Clone_name Chr Start End Ref Alt Func.refGene Gene.refGene ExonicFunc.refGene AAChange.refGene Func.knownGene Gene.knownGene ExonicFunc.knownGene AAChange.knownGene Func.ensGene Gene.ensGene ExonicFunc.ensGene AAChange.ensGene cytoBand genomicSuperDups snp128 Otherinfo position context ref_allele alt_allele tumor_name normal_name score dbsnp_site covered power tumor_power normal_power total_pairs improper_pairs map_Q0_reads t_lod_fstar tumor_f contaminant_fraction contaminant_lod t_ref_count t_alt_count t_ref_sum t_alt_sum t_ref_max_mapq t_alt_max_mapq t_ins_count t_del_count normal_best_gt init_n_lod n_ref_count n_alt_count n_ref_sum n_alt_sum judgement Strand clean_RefGeneSymbol exposure specific note AA_1 chr10 106708938 106708938 T A exonic Lin7a nonsynonymous SNV NM_001039354:c.T22A:p.S8T exonic Lin7a nonsynonymous SNV uc007gyy.1:c.T22A:p.S8T exonic ENSMUSG00000019906 nonsynonymous SNV ENSMUST00000020057:c.T22A:p.S8T 10qD1 NA NA chr10 106708938 ACTxCGG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 129 0 0 57.330996 0.479167 0.02 -0.420861 25 23 715 608 60 60 0 1 TT 15.339564 51 0 1422 0 KEEP + Lin7a YES AA_1 chr10 11015208 11015208 C T exonic Fbxo30 nonsynonymous SNV NM_001168297:c.C2231T:p.P744L exonic Fbxo30 nonsynonymous SNV uc007ejt.2:c.C2231T:p.P744L exonic ENSMUSG00000047648 nonsynonymous SNV ENSMUST00000070300:c.C2231T:p.P744L 10qA1 NA NA chr10 11015208 AGCxTGT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229143 0.229173 0.999869 42 0 0 22.313963 0.533333 0.02 -0.131554 7 8 210 230 60 60 0 0 CC 6.31759 21 0 605 0 KEEP + Fbxo30 NO AA_1 chr10 120392542 120392542 T A intronic Lemd3 NA NA intronic Lemd3 NA NA intronic ENSMUSG00000048661 NA NA 10qD2 NA NA chr10 120392542 ACAxGCC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.38736 0.387407 0.999879 47 1 0 20.299886 0.421053 0.02 -0.17536 11 8 305 221 60 60 0 0 TT 6.616292 22 0 598 0 KEEP - Lemd3 YES AA_1 chr10 120392543 120392543 G C intronic Lemd3 NA NA intronic Lemd3 NA NA intronic ENSMUSG00000048661 NA NA 10qD2 NA NA chr10 120392543 CATxCCA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.38736 0.387407 0.999879 47 1 0 21.699805 0.421053 0.02 -0.175404 11 8 319 235 60 60 0 0 GG 6.597003 22 0 591 0 KEEP - Lemd3 NO AA_1 chr10 120392544 120392544 C A intronic Lemd3 NA NA intronic Lemd3 NA NA intronic ENSMUSG00000048661 NA NA 10qD2 NA NA chr10 120392544 ATGxCAG C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353901 0.353947 0.999869 43 1 0 15.801544 0.388889 0.02 -0.166434 11 7 328 177 60 60 0 0 CC 6.316566 21 0 589 0 KEEP - Lemd3 NO AA_1 chr10 122463384 122463384 C A splicing "Mon2(NM_001163024:exon19:c.2191-1G>T,NM_001163025:exon19:c.2194-1G>T,NM_153395:exon19:c.2191-1G>T)" NA NA splicing "Mon2(uc007hgj.2:exon19:c.2191-1G>T,uc007hgk.2:exon19:c.2191-1G>T,uc011xpe.1:exon19:c.2194-1G>T)" NA NA splicing "ENSMUSG00000034602(ENSMUST00000037557:exon19:c.2191-1G>T,ENSMUST00000170935:exon19:c.2194-1G>T,ENSMUST00000073792:exon19:c.2191-1G>T)" NA NA 10qD2 NA NA chr10 122463384 AACxTAG C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 136 2 0 66.586841 0.419355 0.02 1.142718 36 26 1078 725 60 60 0 0 CC 18.649869 62 0 1764 0 KEEP - Mon2 NO AA_1 chr10 127823430 127823430 C T intronic Ankrd52 NA NA intronic Ankrd52 NA NA intronic ENSMUSG00000014498 NA NA 10qD3 NA NA chr10 127823430 TTCxGGG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 137 0 0 76.500132 0.491228 0.02 1.293757 29 28 806 803 60 60 0 0 CC 17.740073 59 0 1586 0 KEEP + Ankrd52 NO AA_1 chr10 127987639 127987639 G C intergenic "Rpl41(dist=1415),Pa2g4(dist=7183)" NA NA intergenic "Rpl41(dist=1415),Pa2g4(dist=7183)" NA NA intergenic "ENSMUSG00000039810(dist=2809),ENSMUSG00000025364(dist=7183)" NA NA 10qD3 NA NA chr10 127987639 TGCxGTG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 104 0 0 44.199069 0.5 0.02 -0.332962 19 19 538 466 60 60 0 0 GG 15.241048 53 1 1432 6 KEEP NA Rpl41 NO AA_1 chr10 128258980 128258980 A T UTR5 Sarnp NA NA ncRNA_exonic 1110005A23Rik NA NA UTR5 ENSMUSG00000078427 NA NA 10qD3 NA NA chr10 128258980 CTGxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.79441 0.800245 0.992708 53 2 0 44.876986 0.485714 0.02 -0.306917 18 17 511 473 60 60 0 0 AA 3.008085 10 0 282 0 KEEP + Sarnp YES AA_1 chr10 129855886 129855886 C A exonic Vmn2r85 nonsynonymous SNV NM_001102602:c.G1984T:p.A662S exonic Vmn2r85 nonsynonymous SNV uc009vac.1:c.G1984T:p.A662S exonic ENSMUSG00000092048 nonsynonymous SNV ENSMUST00000171811:c.G1984T:p.A662S 10qD3 "Score=0.921938;Name=No.6062,chr10:129882212" NA chr10 129855886 CAGxCAC C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 497 35 58 8.44896 0.061728 0.02 0.976147 76 5 2206 142 60 23 0 0 CC 97.449846 334 1 9152 27 KEEP - Vmn2r85 NO AA_1 chr10 20042944 20042944 A C exonic Bclaf1 synonymous SNV NM_001025392:c.A280C:p.R94R exonic Bclaf1 synonymous SNV uc007ent.1:c.A274C:p.R92R exonic ENSMUSG00000037608 synonymous SNV ENSMUST00000043881:c.A280C:p.R94R 10qA3 NA NA chr10 20042944 TATxGAC A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 164 9 0 29.885766 0.197183 0.02 1.162731 57 14 1598 385 60 60 0 0 AA 22.253836 74 0 2005 0 KEEP + Bclaf1 NO AA_1 chr10 20045770 20045770 A T exonic Bclaf1 nonsynonymous SNV NM_001025392:c.A1711T:p.S571C exonic Bclaf1 nonsynonymous SNV uc007ent.1:c.A1705T:p.S569C exonic ENSMUSG00000037608 nonsynonymous SNV ENSMUST00000043881:c.A1711T:p.S571C 10qA3 NA NA chr10 20045770 GCTxGCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999998 51 2 0 14.965422 0.714286 0.02 -0.070158 2 5 57 144 37 60 0 0 AA 10.22664 34 0 944 0 KEEP + Bclaf1 YES AA_1 chr10 31671252 31671252 T A intronic Nkain2 NA NA intronic Nkain2 NA NA intronic ENSMUSG00000075259 NA NA 10qA4 NA NA chr10 31671252 CGCxTAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.023939 0.024074 0.994391 24 2 0 16.08159 1 0.02 -0.043842 0 5 0 137 0 60 0 0 TT 3.910545 13 0 367 0 KEEP - Nkain2 YES AA_1 chr10 39800602 39800602 A T exonic Slc16a10 nonsynonymous SNV NM_001114332:c.T346A:p.S116T exonic Slc16a10 nonsynonymous SNV uc007ewm.2:c.T346A:p.S116T exonic ENSMUSG00000019838 nonsynonymous SNV ENSMUST00000092566:c.T346A:p.S116T 10qB1 NA NA chr10 39800602 GCGxGCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161341 0.162467 0.993072 31 0 0 14.338265 0.461538 0.02 -0.113681 7 6 198 154 60 60 0 0 AA 3.308162 11 0 303 0 KEEP - Slc16a10 YES AA_1 chr10 53195700 53195700 T A intergenic "Cep85l(dist=96043),Gm20597(dist=22549)" NA NA intergenic "Gm9766(dist=96043),Mcm9(dist=61430)" NA NA downstream ENSMUSG00000056219 NA NA 10qB3 "Score=0.975039;Name=No.6506,chr12:80062781" NA chr10 53195700 CAAxATT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 132 2 2 78.900787 0.447761 0.02 1.197282 37 30 994 846 60 60 0 0 TT 13.53026 45 0 1194 0 KEEP NA Cep85l YES AA_1 chr10 60813745 60813745 A C exonic Pald1 nonsynonymous SNV NM_013753:c.T376G:p.F126V exonic X99384 nonsynonymous SNV uc011xet.1:c.T376G:p.F126V exonic ENSMUSG00000020092 nonsynonymous SNV ENSMUST00000020289:c.T376G:p.F126V 10qB4 NA NA chr10 60813745 GGAxGTT A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 85 0 0 6.365462 0.111111 0.02 -0.315694 32 4 933 99 60 60 0 0 AA 11.066072 37 0 995 0 KEEP - Pald1 NO AA_1 chr10 60938371 60938371 T A upstream Lrrc20 NA NA UTR3 AK085995 NA NA exonic ENSMUSG00000043126 nonsynonymous SNV ENSMUST00000051330:c.A439T:p.S147C 10qB4 NA NA chr10 60938371 CGCxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 210 8 0 120.951919 0.5 0.02 1.094281 45 45 1313 1266 60 60 0 0 TT 24.052034 80 0 2183 0 KEEP - Lrrc20 YES AA_1 chr10 61323185 61323185 T A intronic Col13a1 NA NA intronic Col13a1 NA NA intronic ENSMUSG00000058806 NA NA 10qB4 NA NA chr10 61323185 ACTxACC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 75 4 0 26.260223 0.526316 0.02 -0.175354 9 10 244 272 60 60 0 0 TT 11.425674 38 0 1015 0 KEEP - Col13a1 YES AA_1 chr10 73409893 73409893 T A exonic Pcdh15 nonsynonymous SNV NM_001142736:c.T90A:p.D30E exonic Pcdh15 nonsynonymous SNV uc007fpf.2:c.T90A:p.D30E exonic ENSMUSG00000052613 nonsynonymous SNV ENSMUST00000064562:c.T90A:p.D30E 10qB5.3 NA NA chr10 73409893 CGAxGGT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 105 0 0 26.547403 0.384615 0.02 -0.228017 16 10 456 293 60 60 0 0 TT 19.247313 64 0 1731 0 KEEP + Pcdh15 YES AA_1 chr10 75456675 75456675 A T exonic Gm5134 nonsynonymous SNV NM_198635:c.A1049T:p.H350L exonic Gm5134 nonsynonymous SNV uc007ftv.2:c.A650T:p.H217L exonic ENSMUSG00000033255 nonsynonymous SNV ENSMUST00000037672:c.A650T:p.H217L 10qC1 NA NA chr10 75456675 CTCxTGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 150 0 0 70.825479 0.391304 0.02 1.269605 42 27 1141 780 60 60 0 0 AA 16.026789 56 1 1507 7 KEEP + Gm5134 YES AA_1 chr10 76728714 76728714 C T intronic Pofut2 NA NA intronic Pofut2 NA NA intronic ENSMUSG00000020260 NA NA 10qC1 NA NA chr10 76728714 CCGxGCT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 251 2 0 29.508466 0.131579 0.02 2.383648 99 15 2490 416 60 60 0 0 CC 25.222706 84 0 2086 0 KEEP + Pofut2 NO AA_1 chr10 77183529 77183529 T A exonic Krtap12-1 nonsynonymous SNV NM_010670:c.T160A:p.C54S exonic Krtap12-1 nonsynonymous SNV uc007fwc.1:c.T160A:p.C54S exonic ENSMUSG00000069583 nonsynonymous SNV ENSMUST00000092370:c.T160A:p.C54S 10qC1 NA NA chr10 77183529 GCAxGCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 687 5 0 450.015581 0.448925 0.02 9.643959 205 167 5642 4815 60 60 0 0 TT 68.247415 227 0 6086 0 KEEP + Krtap12-1 YES AA_1 chr10 80328279 80328279 C G intronic Sppl2b NA NA intronic "3110056O03Rik,Sppl2b" NA NA intronic ENSMUSG00000035206 NA NA 10qC1 NA NA chr10 80328279 CCAxAGG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 408 2 0 299.703386 0.411985 0.02 7.578808 157 110 4633 3258 60 60 0 0 CC 32.77805 109 0 2983 0 KEEP + Sppl2b NO AA_1 chr10 80360969 80360969 T C exonic Tmprss9 nonsynonymous SNV NM_001081688:c.T3041C:p.V1014A exonic Tmprss9 nonsynonymous SNV uc011xja.1:c.T3041C:p.V1014A exonic ENSMUSG00000059406 nonsynonymous SNV ENSMUST00000049491:c.T2939C:p.V980A 10qC1 NA NA chr10 80360969 GGGxCCT T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 171 2 0 58.597751 0.266667 0.02 1.193839 66 24 1810 698 60 60 0 0 TT 14.760652 53 1 1421 10 KEEP + Tmprss9 NO AA_1 chr10 80544071 80544071 G C exonic Thop1 nonsynonymous SNV NM_022653:c.G1662C:p.Q554H exonic Thop1 nonsynonymous SNV uc007gfv.2:c.G1662C:p.Q554H exonic ENSMUSG00000004929 nonsynonymous SNV ENSMUST00000005057:c.G1662C:p.Q554H 10qC1 NA NA chr10 80544071 GCAxATT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967422 0.967425 0.999997 98 1 0 28.461245 0.24 0.02 1.436126 38 12 1135 347 60 60 0 0 GG 8.661452 29 0 804 0 KEEP + Thop1 NO AA_1 chr10 80606963 80606963 C G exonic Zbtb7a nonsynonymous SNV NM_010731:c.C245G:p.A82G exonic Zbtb7a nonsynonymous SNV uc007gfz.1:c.C245G:p.A82G exonic ENSMUSG00000035011 nonsynonymous SNV ENSMUST00000048128:c.C245G:p.A82G 10qC1 NA NA chr10 80606963 GTGxCGA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 373 8 0 116.169698 0.256684 0.02 4.101359 139 48 4053 1395 60 60 0 0 CC 42.373385 141 0 3814 0 KEEP + Zbtb7a NO AA_1 chr10 80662193 80662193 T A splicing Nmrk2(NM_027120:exon8:c.503-2A>T) NA NA splicing Itgb1bp3(uc007ggn.1:exon8:c.503-2A>T) NA NA splicing ENSMUSG00000004939(ENSMUST00000005069:exon8:c.503-2A>T) NA NA 10qC1 NA NA chr10 80662193 GACxGAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 112 2 0 33.201918 0.342105 0.02 -0.333202 25 13 706 376 60 60 0 0 TT 18.336488 61 0 1653 0 KEEP - Nmrk2 YES AA_1 chr10 80664767 80664767 T A ncRNA_UTR5 Nmrk2 NA NA ncRNA_UTR5 Itgb1bp3 NA NA ncRNA_UTR5 ENSMUSG00000004939 NA NA 10qC1 NA NA chr10 80664767 CACxGCG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.636904 0.641347 0.993072 44 0 0 26.045929 0.357143 0.02 -0.245547 18 10 512 292 60 60 0 0 TT 3.308493 11 0 303 0 KEEP - Nmrk2 YES AA_1 chr10 85121032 85121032 A T exonic Btbd11 nonsynonymous SNV NM_001017525:c.A1861T:p.R621W exonic Btbd11 nonsynonymous SNV uc007gli.1:c.A490T:p.R164W exonic ENSMUSG00000020042 nonsynonymous SNV ENSMUST00000105306:c.A1861T:p.R621W 10qC1 NA NA chr10 85121032 CAGxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 130 0 0 43.349326 0.315789 0.02 1.195352 39 18 1137 502 60 60 0 0 AA 15.039767 50 0 1400 0 KEEP + Btbd11 YES AA_1 chr10 86338254 86338254 A T exonic Stab2 nonsynonymous SNV NM_138673:c.T4843A:p.S1615T exonic Stab2 nonsynonymous SNV uc007gqo.1:c.T4843A:p.S1615T exonic ENSMUSG00000035459 nonsynonymous SNV ENSMUST00000161560:c.T490A:p.S164T 10qC1 NA NA chr10 86338254 TTGxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 189 8 0 36.445147 0.326087 0.02 -0.403315 31 15 887 419 60 60 0 0 AA 31.282077 104 0 2901 0 KEEP - Stab2 YES AA_1 chr10 88374161 88374161 A T exonic Slc5a8 nonsynonymous SNV NM_145423:c.A1230T:p.L410F exonic Slc5a8 nonsynonymous SNV uc007grz.1:c.A1230T:p.L410F exonic ENSMUSG00000020062 nonsynonymous SNV ENSMUST00000020255:c.A1230T:p.L410F 10qC1 NA NA chr10 88374161 GTTxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 80 3 0 36.484078 0.52 0.02 -0.219236 12 13 330 378 60 60 0 0 AA 12.630271 42 0 1127 0 KEEP + Slc5a8 YES AA_1 chr10 88917639 88917639 A G exonic Nr1h4 nonsynonymous SNV NM_001163700:c.T1283C:p.L428P exonic Nr1h4 nonsynonymous SNV uc007gsf.2:c.T1271C:p.L424P exonic ENSMUSG00000047638 nonsynonymous SNV ENSMUST00000058126:c.T1271C:p.L424P 10qC2 NA NA chr10 88917639 TCAxGCA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 164 2 0 45.142238 0.218391 0.02 1.129377 68 19 1950 559 60 60 0 0 AA 15.64134 52 0 1454 0 KEEP - Nr1h4 NO AA_1 chr10 90510928 90510928 A C exonic Apaf1 nonsynonymous SNV NM_001042558:c.T1949G:p.L650R exonic Apaf1 nonsynonymous SNV uc007gtg.1:c.T1949G:p.L650R exonic ENSMUSG00000019979 nonsynonymous SNV ENSMUST00000020157:c.T1949G:p.L650R 10qC2 NA NA chr10 90510928 AGAxGTT A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 210 2 0 29.092186 0.222222 0.02 1.22354 49 14 1431 369 60 60 0 0 AA 32.785793 109 0 3043 0 KEEP - Apaf1 NO AA_1 chr11 100986332 100986332 C T exonic Tubg1 synonymous SNV NM_134024:c.C892T:p.L298L exonic Tubg1 synonymous SNV uc007lnk.1:c.C892T:p.L298L exonic ENSMUSG00000035198 synonymous SNV ENSMUST00000043680:c.C892T:p.L298L 11qD NA NA chr11 100986332 CTGxTAC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 201 0 10 93.983941 0.345133 0.02 2.579162 74 39 2144 1070 60 60 0 0 CC 17.745835 59 0 1647 0 KEEP + Tubg1 NO AA_1 chr11 100986582 100986582 C T exonic Tubg1 synonymous SNV NM_134024:c.C1062T:p.A354A exonic Tubg1 synonymous SNV uc007lnk.1:c.C1062T:p.A354A exonic ENSMUSG00000035198 synonymous SNV ENSMUST00000043680:c.C1062T:p.A354A 11qD NA NA chr11 100986582 AGCxAGC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800133 0.800245 0.999859 59 2 0 39.315641 0.470588 0.02 -0.306912 18 16 546 419 60 60 0 0 CC 5.414805 18 0 519 0 KEEP + Tubg1 NO AA_1 chr11 102730491 102730491 G T intronic Eftud2 NA NA intronic "Eftud2,mKIAA0031" NA NA ncRNA_intronic ENSMUSG00000091056 NA NA 11qE1 NA NA chr11 102730491 GAAxGAA G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.228106 0.229173 0.995343 32 1 0 6.572686 0.2 0.02 -0.131558 12 3 359 84 60 60 0 0 GG 4.211226 14 0 393 0 KEEP - Eftud2 NO AA_1 chr11 103672667 103672667 T A exonic Wnt3 nonsynonymous SNV NM_009521:c.T348A:p.H116Q exonic Wnt3 nonsynonymous SNV uc007lvs.2:c.T348A:p.H116Q exonic ENSMUSG00000000125 nonsynonymous SNV ENSMUST00000000127:c.T348A:p.H116Q 11qE1 NA NA chr11 103672667 GCAxGCC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 431 3 0 114.449747 0.207627 0.02 5.473293 187 49 5118 1434 60 60 0 0 TT 39.041957 130 0 3459 0 KEEP + Wnt3 YES AA_1 chr11 103830541 103830541 A T exonic Arf2 nonsynonymous SNV NM_007477:c.A130T:p.T44S exonic Arf2 nonsynonymous SNV uc007lvx.1:c.A130T:p.T44S exonic ENSMUSG00000062421 nonsynonymous SNV ENSMUST00000057921:c.A130T:p.T44S 11qE1 NA NA chr11 103830541 GTGxCAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999998 60 0 0 28.27046 0.625 0.02 -0.140308 6 10 171 281 60 60 0 0 AA 9.908295 33 0 883 0 KEEP + Arf2 YES AA_1 chr11 104034699 104034699 A T exonic Crhr1 nonsynonymous SNV NM_007762:c.A923T:p.Q308L exonic Crhr1 nonsynonymous SNV uc007lvz.1:c.A923T:p.Q308L exonic ENSMUSG00000018634 nonsynonymous SNV ENSMUST00000093924:c.A155T:p.Q52L 11qE1 NA NA chr11 104034699 TTCxGTA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 140 3 0 114.343749 0.745098 0.02 1.346271 13 38 377 1088 60 60 0 0 AA 20.153264 67 0 1876 0 KEEP + Crhr1 YES AA_1 chr11 105832697 105832697 C T exonic Ace synonymous SNV NM_001281819:c.C762T:p.P254P exonic Ace synonymous SNV uc007lxu.1:c.C762T:p.P254P exonic ENSMUSG00000020681 synonymous SNV ENSMUST00000001963:c.C762T:p.P254P 11qE1 NA NA chr11 105832697 GCCxCTC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999999 0.999999 1 290 10 0 51.735592 0.188525 0.02 2.688054 99 23 2959 664 60 60 0 0 CC 33.685597 112 0 3103 0 KEEP - Ace NO AA_1 chr11 107073733 107073733 C G UTR3 Pitpnc1 NA NA exonic Pitpnc1 nonsynonymous SNV uc007mak.1:c.G853C:p.D285H exonic ENSMUSG00000040430 nonsynonymous SNV ENSMUST00000040380:c.G853C:p.D285H 11qE1 "Score=0.904722;Name=No.16905,chrX:138456961" NA chr11 107073733 GATxTGG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 179 2 0 25.528949 0.125 0.02 1.248437 84 12 2468 355 60 60 0 0 CC 20.454415 68 0 1927 0 KEEP - Pitpnc1 NO AA_1 chr11 107814949 107814949 T A intronic Prkca NA NA intronic Prkca NA NA intronic ENSMUSG00000050965 NA NA 11qE1 NA NA chr11 107814949 ATGxACT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 130 2 0 70.110857 0.595238 0.02 -0.368289 17 25 466 705 60 60 0 0 TT 17.71709 62 1 1666 8 KEEP - Prkca YES AA_1 chr11 113550152 113550152 A T exonic D11Wsu47e nonsynonymous SNV NM_177777:c.A1058T:p.Q353L exonic D11Wsu47e nonsynonymous SNV uc007mev.1:c.A1058T:p.Q353L exonic ENSMUSG00000041623 nonsynonymous SNV ENSMUST00000042227:c.A1058T:p.Q353L 11qE2 NA NA chr11 113550152 ATCxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.95649 0.959859 0.99649 69 0 0 26.262979 0.24 0.02 -0.438393 38 12 1071 325 60 60 0 0 AA 4.510745 15 0 406 0 KEEP + D11Wsu47e YES AA_1 chr11 115912168 115912168 A T intronic Unk NA NA intronic Unk NA NA intronic ENSMUSG00000020770 NA NA 11qE2 NA NA chr11 115912168 CCTxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.845628 0.851984 0.99254 54 0 0 76.30325 0.684211 0.02 -0.333261 12 26 357 742 60 60 0 0 AA 2.707237 9 0 253 0 KEEP + Unk YES AA_1 chr11 116040097 116040097 C G exonic Acox1 nonsynonymous SNV NM_001271898:c.G1006C:p.A336P exonic Acox1 nonsynonymous SNV uc007mkj.1:c.G70C:p.A24P exonic ENSMUSG00000020777 nonsynonymous SNV ENSMUST00000148601:c.G898C:p.A300P 11qE2 NA NA chr11 116040097 TGGxCAG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 0.999999 71 0 0 13.450248 0.193548 0.02 -0.271887 25 6 750 172 60 60 0 0 CC 10.812692 36 0 984 0 KEEP - Acox1 NO AA_1 chr11 116086799 116086799 T A exonic Evpl nonsynonymous SNV NM_025276:c.A2456T:p.Q819L exonic Evpl nonsynonymous SNV uc007mkp.1:c.A2456T:p.Q819L exonic ENSMUSG00000034282 nonsynonymous SNV ENSMUST00000037007:c.A2456T:p.Q819L 11qE2 NA NA chr11 116086799 ACCxGGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 394 3 0 387.844081 0.732955 0.02 4.124339 47 129 1368 3707 60 60 0 0 TT 47.200554 157 0 4329 0 KEEP - Evpl YES AA_1 chr11 116466562 116466562 G C exonic Rhbdf2 nonsynonymous SNV NM_001167680:c.C460G:p.P154A exonic Rhbdf2 nonsynonymous SNV uc007mlu.2:c.C316G:p.P106A exonic ENSMUSG00000020806 nonsynonymous SNV ENSMUST00000103028:c.C460G:p.P154A 11qE2 NA NA chr11 116466562 TGGxCAT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 170 0 0 242.513686 0.727273 0.02 2.901637 30 80 856 2323 60 60 0 0 GG 12.332194 41 0 1139 0 KEEP - Rhbdf2 NO AA_1 chr11 116629305 116629305 T A exonic St6galnac1 synonymous SNV NM_011371:c.A738T:p.L246L exonic St6galnac1 synonymous SNV uc007mme.1:c.A738T:p.L246L exonic ENSMUSG00000009588 synonymous SNV ENSMUST00000009732:c.A738T:p.L246L 11qE2 "Score=0.955491;Name=No.13049,chr11:116600300" NA chr11 116629305 CTCxAGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992569 0.999998 0.99257 234 1 92 23.533329 0.108108 0.02 2.446071 99 12 2631 343 36 36 0 0 TT 9.614548 32 0 857 0 KEEP - St6galnac1 YES AA_1 chr11 117093968 117093968 G T intronic Sept9 NA NA intronic Sept9 NA NA UTR5 ENSMUSG00000059248 NA NA 11qE2 NA NA chr11 117093968 GGGxACA G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987941 0.987943 0.999998 111 0 0 11.143991 0.118644 0.02 0.973948 52 7 1541 171 60 60 0 0 GG 10.22768 34 0 963 0 KEEP + Sept9 NO AA_1 chr11 117687289 117687289 G C exonic Afmid nonsynonymous SNV NM_027827:c.G26C:p.G9A exonic Afmid nonsynonymous SNV uc007moa.2:c.G26C:p.G9A exonic ENSMUSG00000017718 nonsynonymous SNV ENSMUST00000073388:c.G26C:p.G9A 11qE2 NA NA chr11 117687289 CGGxCCA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 206 2 0 200.660128 0.730337 0.02 1.201837 24 65 710 1922 60 60 0 0 GG 22.554983 75 0 2055 0 KEEP - Afmid NO AA_1 chr11 117888080 117888080 A T exonic Dnah17 synonymous SNV NM_001167746:c.T12468A:p.T4156T exonic Dnahc17 synonymous SNV uc007moo.2:c.T12468A:p.T4156T exonic ENSMUSG00000033987 synonymous SNV ENSMUST00000132685:c.T9573A:p.T3191T 11qE2 NA NA chr11 117888080 GACxGTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 205 2 0 218.811543 0.744898 0.02 1.032972 25 73 711 2082 60 60 0 0 AA 23.158154 77 0 2127 0 KEEP - Dnah17 YES AA_1 chr11 119103827 119103827 C T exonic Ccdc40 stopgain SNV NM_175430:c.C1396T:p.Q466X exonic Ccdc40 stopgain SNV uc007mqc.1:c.C1396T:p.Q466X exonic ENSMUSG00000039963 stopgain SNV ENSMUST00000035935:c.C1396T:p.Q466X 11qE2 NA NA chr11 119103827 ATCxAAG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976728 0.976865 0.999859 83 0 0 40.501212 0.314815 0.02 1.319951 37 17 1114 470 60 60 0 0 CC 5.414037 18 0 503 0 KEEP + Ccdc40 NO AA_1 chr11 120129620 120129620 G C splicing Bahcc1(NM_198423:exon4:c.359-1G>C) NA NA splicing "Bahcc1(uc011yiy.1:exon4:c.359-1G>C,uc007msd.2:exon4:c.359-1G>C,uc007mse.2:exon3:c.359-1G>C)" NA NA splicing "ENSMUSG00000039741(ENSMUST00000044985:exon4:c.359-1G>C,ENSMUST00000122148:exon4:c.359-1G>C,ENSMUST00000118987:exon3:c.359-1G>C)" NA NA 11qE2 NA NA chr11 120129620 CCAxCTC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 120 0 0 28.553055 0.26 0.02 -0.437178 37 13 1129 348 60 60 0 0 GG 14.137493 47 0 1334 0 KEEP + Bahcc1 NO AA_1 chr11 120238396 120238396 T C exonic 2310003H01Rik synonymous SNV NM_027980:c.A864G:p.A288A exonic "2310003H01Rik,Faap100" synonymous SNV uc007msn.2:c.A456G:p.A152A exonic ENSMUSG00000025384 synonymous SNV ENSMUST00000026448:c.A864G:p.A288A 11qE2 NA NA chr11 120238396 CTCxGCC T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 214 0 0 247.880787 0.730159 0.02 2.877783 34 92 988 2360 60 60 0 0 TT 14.437267 48 0 1328 0 KEEP - 2310003H01Rik NO AA_1 chr11 120624460 120624460 A T intergenic "Cbr2(dist=31125),Rfng(dist=17599)" NA NA upstream;downstream AK195902;AK199756 NA NA exonic ENSMUSG00000078249 nonsynonymous SNV ENSMUST00000105046:c.A258T:p.R86S 11qE2 NA NA chr11 120624460 CAGxCCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.32057 0.322807 0.993072 35 0 0 8.869201 0.222222 0.02 -0.157834 14 4 389 111 60 60 0 0 AA 3.308006 11 0 296 0 KEEP NA Cbr2 YES AA_1 chr11 35822232 35822232 C A exonic Tenm2 nonsynonymous SNV NM_011856:c.G7600T:p.V2534F exonic Odz2 nonsynonymous SNV uc011xtd.1:c.G7507T:p.V2503F exonic ENSMUSG00000049336 nonsynonymous SNV ENSMUST00000109310:c.G7507T:p.V2503F 11qA4 NA NA chr11 35822232 TGAxCTG C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 88 0 0 6.520127 0.102564 0.02 -0.342005 35 4 1021 102 60 60 0 0 CC 12.318099 41 0 1102 0 KEEP - Tenm2 NO AA_1 chr11 35891878 35891878 T A exonic Tenm2 nonsynonymous SNV NM_011856:c.A2734T:p.N912Y exonic Odz2 nonsynonymous SNV uc011xtd.1:c.A2641T:p.N881Y exonic ENSMUSG00000049336 nonsynonymous SNV ENSMUST00000109310:c.A2641T:p.N881Y 11qA4 NA NA chr11 35891878 GGTxGTC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693573 0.693668 0.999863 55 2 0 88.29958 0.966667 0.02 -0.262959 1 29 30 764 60 60 0 0 TT 6.015224 20 0 548 0 KEEP - Tenm2 YES AA_1 chr11 49074476 49074476 G T exonic Mgat1 nonsynonymous SNV NM_001110149:c.G283T:p.A95S exonic Mgat1 nonsynonymous SNV uc007iqd.1:c.G283T:p.A95S exonic ENSMUSG00000020346 nonsynonymous SNV ENSMUST00000109194:c.G283T:p.A95S 11qB1.2 NA NA chr11 49074476 CCAxCCT G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 155 1 0 34.756056 0.177083 0.02 0.853457 79 17 2318 461 60 60 0 0 GG 12.331626 41 0 1154 0 KEEP + Mgat1 NO AA_1 chr11 50590260 50590260 A T intronic Adamts2 NA NA intronic Adamts2 NA NA intronic ENSMUSG00000036545 NA NA 11qB1.3 NA NA chr11 50590260 GTGxGTA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 108 0 0 151.494678 0.979167 0.02 -0.420895 1 47 26 1312 60 60 0 0 AA 12.029355 40 0 1099 0 KEEP + Adamts2 YES AA_1 chr11 53446674 53446674 C T exonic Il13 synonymous SNV NM_008355:c.G183A:p.L61L exonic Il13 synonymous SNV uc007iwr.2:c.G183A:p.L61L exonic ENSMUSG00000020383 synonymous SNV ENSMUST00000020650:c.G183A:p.L61L 11qB1.3 NA NA chr11 53446674 GGCxAGG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 126 2 0 146.870609 0.979167 0.02 1.410736 1 47 31 1267 60 60 0 0 CC 17.115314 57 0 1575 0 KEEP - Il13 NO AA_1 chr11 58394663 58394663 T G exonic Olfr325 nonsynonymous SNV NM_207153:c.T316G:p.F106V exonic Olfr325 nonsynonymous SNV uc007jbu.2:c.T316G:p.F106V exonic ENSMUSG00000060765 nonsynonymous SNV ENSMUST00000076902:c.T316G:p.F106V 11qB1.3 "Score=0.956038;Name=No.12975,chr11:58342560" NA chr11 58394663 ATGxTCC T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 286 18 53 130.061703 0.597403 0.02 1.190932 31 46 873 1307 60 60 0 0 TT 43.874629 146 0 3957 0 KEEP + Olfr325 NO AA_1 chr11 58998506 58998506 G C intronic Guk1 NA NA intronic Guk1 NA NA intronic ENSMUSG00000020444 NA NA 11qB1.3 NA NA chr11 58998506 AAGxTAC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 269 10 0 14.897703 0.081633 0.02 2.535073 90 8 2613 231 60 60 0 0 GG 34.462533 115 0 3118 0 KEEP - Guk1 NO AA_1 chr11 61019368 61019368 T A intergenic "Usp22(dist=30807),Aldh3a1(dist=2876)" NA NA intergenic "Usp22(dist=30807),Aldh3a1(dist=2876)" NA NA ncRNA_exonic ENSMUSG00000082626 NA NA 11qB2 NA NA chr11 61019368 TCCxCTC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 125 0 19 112.500011 1 0.02 -0.298163 0 34 0 963 0 60 0 0 TT 21.657012 72 0 2010 0 KEEP NA Usp22 YES AA_1 chr11 64823443 64823443 T A exonic Arhgap44 nonsynonymous SNV NM_001099288:c.A1850T:p.Q617L exonic Arhgap44 nonsynonymous SNV uc007jkt.1:c.A1424T:p.Q475L exonic ENSMUSG00000033389 nonsynonymous SNV ENSMUST00000047463:c.A1850T:p.Q617L 11qB3 NA NA chr11 64823443 GGCxGTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851864 0.851984 0.999859 67 2 0 119.563994 0.972973 0.02 -0.333245 1 36 29 1044 60 60 0 0 TT 5.413778 18 0 497 0 KEEP - Arhgap44 YES AA_1 chr11 67140751 67140751 A T exonic Myh13 nonsynonymous SNV NM_001081250:c.A147T:p.K49N exonic Myh13 nonsynonymous SNV uc007jmt.1:c.A147T:p.K49N exonic ENSMUSG00000060180 nonsynonymous SNV ENSMUST00000081911:c.A147T:p.K49N 11qB3 NA NA chr11 67140751 GAAxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 61 0 0 69.305352 1 0.02 -0.192925 0 21 0 593 0 60 0 0 AA 9.324885 31 0 871 0 KEEP + Myh13 YES AA_1 chr11 68643461 68643461 G C exonic Ndel1 synonymous SNV NM_023668:c.C900G:p.G300G exonic Ndel1 synonymous SNV uc007joc.2:c.C900G:p.G300G exonic ENSMUSG00000018736 synonymous SNV ENSMUST00000018880:c.C900G:p.G300G 11qB3 NA NA chr11 68643461 TGGxCCA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 83 3 0 74.695455 1 0.02 -0.21001 0 23 0 638 0 60 0 0 GG 13.200913 44 0 1218 0 KEEP - Ndel1 NO AA_1 chr11 69215052 69215052 T A exonic Kdm6b nonsynonymous SNV NM_001017426:c.A4124T:p.Q1375L exonic Kdm6b nonsynonymous SNV uc007jqd.1:c.A2660T:p.Q887L exonic ENSMUSG00000018476 nonsynonymous SNV ENSMUST00000094077:c.A4124T:p.Q1375L 11qB3 NA NA chr11 69215052 AGCxGCA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 315 3 0 485.837367 0.97351 0.02 4.335137 4 147 115 4238 60 60 0 0 TT 36.666467 122 0 3334 0 KEEP - Kdm6b YES AA_1 chr11 69749806 69749806 G C intronic Ybx2 NA NA intronic Ybx2 NA NA intronic ENSMUSG00000018554 NA NA 11qB3 NA NA chr11 69749806 GGGxCAG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.610258 0.612407 0.99649 41 0 0 37.214433 0.608696 0.02 -0.236002 9 14 269 373 60 60 0 0 GG 4.511634 15 0 414 0 KEEP + Ybx2 NO AA_1 chr11 74019822 74019822 G T exonic Olfr43 nonsynonymous SNV NM_146711:c.C895A:p.L299M exonic Olfr43 nonsynonymous SNV uc007kbp.2:c.C895A:p.L299M exonic ENSMUSG00000070377 nonsynonymous SNV ENSMUST00000078936:c.C895A:p.L299M 11qB5 "Score=0.982883;Name=No.13010,chr11:74008947" NA chr11 74019822 TCAxAGC G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 144 0 12 13.189992 0.137255 0.02 1.150063 44 7 1324 187 60 60 0 0 GG 18.952972 63 0 1821 0 KEEP - Olfr43 NO AA_1 chr11 74992096 74992096 G A intronic "Dph1,Ovca2" NA NA intronic "Dph1,Ovca2" NA NA intronic "ENSMUSG00000038268,ENSMUSG00000078789" NA NA 11qB5 NA NA chr11 74992096 AAGxGGT G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.227502 0.229173 0.992708 29 2 0 49.746523 1 0.02 -0.131539 0 15 0 426 0 60 0 0 GG 3.007922 10 0 280 0 KEEP - Dph1 NO AA_1 chr11 78310870 78310870 G C exonic Sarm1 nonsynonymous SNV NM_001168521:c.C91G:p.P31A exonic Sarm1 nonsynonymous SNV uc007kji.2:c.C91G:p.P31A exonic ENSMUSG00000050132 nonsynonymous SNV ENSMUST00000061174:c.C91G:p.P31A 11qB5 NA NA chr11 78310870 CGGxCAC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992924 0.992926 0.999999 117 1 0 83.90419 0.5 0.02 1.429988 31 31 922 878 60 60 0 0 GG 10.21377 34 0 918 0 KEEP - Sarm1 NO AA_1 chr11 87369054 87369054 T A UTR3 Tex14 NA NA UTR3 Tex14 NA NA UTR3 ENSMUSG00000010342 NA NA 11qC NA NA chr11 87369054 CTGxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 115 0 0 18.039744 0.190476 0.02 -0.368273 34 8 939 231 60 60 0 0 TT 17.442282 58 0 1574 0 KEEP + Tex14 YES AA_1 chr11 87413998 87413998 C G intronic Mtmr4 NA NA intronic Mtmr4 NA NA intronic ENSMUSG00000018401 NA NA 11qC NA NA chr11 87413998 TTGxCTG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963762 0.963774 0.999988 89 2 0 45.116118 0.333333 0.02 1.543918 34 17 942 511 60 60 0 0 CC 8.119481 27 0 739 0 KEEP + Mtmr4 NO AA_1 chr11 87579096 87579096 T A intronic Bzrap1 NA NA intronic Bzrap1 NA NA intronic ENSMUSG00000034156 NA NA 11qC NA NA chr11 87579096 CTCxGGT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963773 0.963774 0.999999 102 2 0 29.367649 0.26 0.02 1.346715 37 13 1016 356 60 60 0 0 TT 10.492751 35 0 928 0 KEEP + Bzrap1 YES AA_1 chr11 87703060 87703060 A C exonic Olfr462 nonsynonymous SNV NM_146411:c.T337G:p.F113V exonic Olfr462 nonsynonymous SNV uc007kux.1:c.T337G:p.F113V exonic ENSMUSG00000050539 nonsynonymous SNV ENSMUST00000049743:c.T337G:p.F113V 11qC "Score=0.951503;Name=No.13030,chr11:87706520" NA chr11 87703060 AGAxGAC A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 70 0 2 17.06198 0.266667 0.02 -0.263059 22 8 639 208 60 60 0 0 AA 8.72326 29 0 816 0 KEEP - Olfr462 NO AA_1 chr11 94431706 94431706 T A exonic Acsf2 synonymous SNV NM_153807:c.A957T:p.T319T exonic Acsf2 synonymous SNV uc007kzc.1:c.A957T:p.T319T exonic ENSMUSG00000076435 synonymous SNV ENSMUST00000103164:c.A957T:p.T319T 11qD NA NA chr11 94431706 CATxGTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.982687 0.989542 0.993072 84 2 0 118.986012 0.688525 0.02 1.357324 19 42 530 1154 60 60 0 0 TT 3.306789 11 0 288 0 KEEP - Acsf2 YES AA_1 chr11 9515693 9515693 A C exonic Abca13 synonymous SNV NM_178259:c.A14313C:p.A4771A exonic Abca13 synonymous SNV uc007iaa.1:c.A14313C:p.A4771A exonic ENSMUSG00000004668 synonymous SNV ENSMUST00000042740:c.A14313C:p.A4771A 11qA1 NA NA chr11 9515693 AGCxGGC A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 0.999997 38 0 0 16.281365 1 0.02 -0.043841 0 5 0 139 0 60 0 0 AA 8.421859 28 0 775 0 KEEP + Abca13 NO AA_1 chr11 96207052 96207052 G A exonic Hoxb3 nonsynonymous SNV NM_010458:c.G641A:p.R214H exonic Hoxb3 nonsynonymous SNV uc007lbx.1:c.G641A:p.R214H exonic ENSMUSG00000048763 nonsynonymous SNV ENSMUST00000055334:c.G641A:p.R214H 11qD NA NA chr11 96207052 ACCxTTA G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 77 0 0 64.984359 0.709677 0.02 -0.271811 9 22 230 626 60 60 0 0 GG 9.311174 31 0 742 0 KEEP + Hoxb3 NO AA_1 chr11 97199183 97199183 T A exonic Gpr179 nonsynonymous SNV NM_001081220:c.A3459T:p.E1153D exonic Gpr179 nonsynonymous SNV uc007ldy.1:c.A3459T:p.E1153D exonic ENSMUSG00000070337 nonsynonymous SNV ENSMUST00000093942:c.A3459T:p.E1153D 11qD NA NA chr11 97199183 ATCxTCG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 303 6 0 346.269751 0.727273 0.02 3.835724 45 120 1311 3311 60 60 0 0 TT 31.173656 104 0 2799 0 KEEP - Gpr179 YES AA_1 chr11 98516259 98516259 A T exonic Gsdma2 synonymous SNV NM_029727:c.A822T:p.P274P exonic Gsdma2 synonymous SNV uc011yef.1:c.A321T:p.P107P exonic ENSMUSG00000017211 synonymous SNV ENSMUST00000017355:c.A321T:p.P107P 11qD NA NA chr11 98516259 TCCxGTG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 93 0 0 13.024251 0.15 0.02 -0.359504 34 6 947 175 60 60 0 0 AA 11.419555 38 0 1029 0 KEEP + Gsdma2 YES AA_1 chr11 98769657 98769657 A T intronic Cdc6 NA NA ncRNA_intronic cdc6 NA NA intronic ENSMUSG00000017499 NA NA 11qD NA NA chr11 98769657 CCCxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.422559 0.423478 0.997832 39 0 0 8.863756 0.2 0.02 -0.175394 16 4 467 113 60 60 0 0 AA 4.812752 16 0 448 0 KEEP + Cdc6 YES AA_1 chr11 99900406 99900406 A T intronic Krt34 NA NA intronic Krt34 NA NA intronic ENSMUSG00000043485 NA NA 11qD NA NA chr11 99900406 GGAxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 150 1 0 54.853157 0.263736 0.02 0.897188 67 24 1963 662 60 60 0 0 AA 12.934499 43 0 1210 0 KEEP - Krt34 YES AA_1 chr11 99981099 99981099 T A intronic Krt13 NA NA intronic Krt13 NA NA intronic ENSMUSG00000044041 NA NA 11qD NA NA chr11 99981099 GAAxATT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 63 1 0 66.669667 0.814815 0.02 -0.245522 5 22 134 618 60 60 1 0 TT 9.923462 33 0 879 0 KEEP - Krt13 YES AA_1 chr12 103801258 103801258 A T exonic Chga nonsynonymous SNV NM_007693:c.A1283T:p.E428V exonic Chga nonsynonymous SNV uc007oui.1:c.A1283T:p.E428V exonic ENSMUSG00000021194 nonsynonymous SNV ENSMUST00000021610:c.A1283T:p.E428V 12qE NA NA chr12 103801258 AGGxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693229 0.693668 0.999366 49 0 0 50.351898 0.62069 0.02 -0.262695 11 18 290 501 60 60 0 0 AA 5.112902 17 0 468 0 KEEP + Chga YES AA_1 chr12 111518959 111518959 G C UTR3 Dio3 NA NA UTR3 Dio3 NA NA UTR3 ENSMUSG00000075707 NA NA 12qF1 NA NA chr12 111518959 GAGxCTC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 68 0 0 41.35295 0.6 0.02 -0.218259 10 15 286 416 60 60 0 0 GG 9.624112 32 0 873 0 KEEP + Dio3 NO AA_1 chr12 117333230 117333230 C T exonic Vipr2 nonsynonymous SNV NM_009511:c.C293T:p.S98L exonic Vipr2 nonsynonymous SNV uc007phd.2:c.C293T:p.S98L exonic ENSMUSG00000011171 nonsynonymous SNV ENSMUST00000011315:c.C293T:p.S98L 12qF2 NA NA chr12 117333230 GGTxAGA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 136 6 0 27.104608 0.34375 0.02 -0.306945 21 11 618 308 60 60 0 0 CC 22.555981 75 0 2133 0 KEEP + Vipr2 NO AA_1 chr12 119539250 119539250 T A exonic Sp4 synonymous SNV NM_001166385:c.A39T:p.A13A exonic Sp4 synonymous SNV uc007pif.2:c.A39T:p.A13A exonic ENSMUSG00000025323 synonymous SNV ENSMUST00000026367:c.A39T:p.A13A 12qF2 NA NA chr12 119539250 CGCxGCC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999998 55 2 0 12.571896 0.5 0.02 -0.087677 5 5 146 132 60 60 0 0 TT 9.862573 33 0 877 0 KEEP - Sp4 YES AA_1 chr12 34052624 34052624 G C exonic Atxn7l1 nonsynonymous SNV NM_001033436:c.G1918C:p.D640H exonic Atxn7l1 nonsynonymous SNV uc007nis.2:c.G1285C:p.D429H exonic ENSMUSG00000020564 nonsynonymous SNV ENSMUST00000090597:c.G1918C:p.D640H 12qA3 NA NA chr12 34052624 TTTxACA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423439 0.423478 0.999909 52 0 0 6.69288 0.142857 0.02 -0.184185 18 3 538 90 60 60 0 0 GG 7.219574 24 0 686 0 KEEP + Atxn7l1 NO AA_1 chr12 50490857 50490857 A T ncRNA_exonic 3110039M20Rik NA NA exonic Foxg1 nonsynonymous SNV uc007nmg.1:c.A595T:p.I199L exonic ENSMUSG00000089922 nonsynonymous SNV ENSMUST00000110746:c.A595T:p.I199L 12qB3 NA NA chr12 50490857 GCCxTAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 87 0 0 13.03979 0.333333 0.02 -0.131531 10 5 271 148 60 60 0 0 AA 15.937862 53 0 1424 0 KEEP + 3110039M20Rik YES AA_1 chr12 56001338 56001338 T A exonic Baz1a nonsynonymous SNV NM_013815:c.A3503T:p.D1168V exonic Baz1a nonsynonymous SNV uc007nnz.2:c.A3503T:p.D1168V exonic ENSMUSG00000035021 nonsynonymous SNV ENSMUST00000038926:c.A3512T:p.D1171V 12qC1 NA NA chr12 56001338 CGGxCGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 69 0 0 19.071952 0.347826 0.02 -0.201224 15 8 397 217 60 60 0 0 TT 12.330187 41 0 1108 0 KEEP - Baz1a YES AA_1 chr12 71554141 71554141 G T UTR5 Tmx1 NA NA UTR5 Tmx1 NA NA UTR5 ENSMUSG00000021072 NA NA 12qC2 NA NA chr12 71554141 GCTxGGT G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996142 0.996233 0.999909 105 2 0 106.654923 0.558824 0.02 1.188396 30 38 890 1088 60 60 0 0 GG 7.216948 24 0 663 0 KEEP + Tmx1 NO AA_1 chr12 71979489 71979489 A T intronic Frmd6 NA NA intronic Frmd6 NA NA intronic ENSMUSG00000048285 NA NA 12qC3 NA NA chr12 71979489 AGAxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.227464 0.229173 0.99254 27 0 0 34.957922 0.8 0.02 -0.131517 3 12 84 325 60 60 0 0 AA 2.706406 9 0 240 0 KEEP + Frmd6 YES AA_1 chr12 77121501 77121501 A G exonic Syne2 nonsynonymous SNV NM_001005510:c.A12986G:p.D4329G exonic Syne2 nonsynonymous SNV uc007nxp.1:c.A12986G:p.D4329G exonic ENSMUSG00000063450 nonsynonymous SNV ENSMUST00000044217:c.A12986G:p.D4329G 12qC3 NA NA chr12 77121501 AGGxCCA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.543786 0.552887 0.983538 51 1 0 23.700273 0.36 0.02 -0.219229 16 9 441 265 60 60 0 0 AA 6.009713 20 0 537 0 KEEP + Syne2 NO AA_1 chr12 77340517 77340517 T A exonic Tex21 nonsynonymous SNV NM_001159532:c.A194T:p.N65I exonic Tex21 nonsynonymous SNV uc007nxx.2:c.A194T:p.N65I exonic ENSMUSG00000021056 nonsynonymous SNV ENSMUST00000021453:c.A194T:p.N65I 12qC3 NA NA chr12 77340517 TTGxTGT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 120 0 0 30.262661 0.6 0.02 -0.175264 8 12 225 304 60 60 0 0 TT 23.156414 77 0 2098 0 KEEP - Tex21 YES AA_1 chr12 81818224 81818224 A T exonic Plekhd1 nonsynonymous SNV NM_001177503:c.A572T:p.N191I exonic 3830431G21Rik nonsynonymous SNV uc007obf.2:c.A572T:p.N191I exonic ENSMUSG00000066438 nonsynonymous SNV ENSMUST00000140770:c.A572T:p.N191I 12qD1 NA NA chr12 81818224 TGAxCCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053742 0.054137 0.992708 23 0 0 10.098253 0.5 0.02 -0.070147 4 4 115 106 60 60 0 0 AA 3.007796 10 0 277 0 KEEP + Plekhd1 YES AA_1 chr12 81821553 81821553 T A intronic Plekhd1 NA NA intronic 3830431G21Rik NA NA intronic ENSMUSG00000066438 NA NA 12qD1 NA NA chr12 81821553 TTCxTCC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 35 0 0 22.452625 0.615385 0.02 -0.122766 5 8 141 224 60 60 0 0 TT 5.1131 17 0 472 0 KEEP + Plekhd1 YES AA_1 chr12 82881474 82881474 T A intronic Map3k9 NA NA intronic Map3k9 NA NA intronic ENSMUSG00000042724 NA NA 12qD1 NA NA chr12 82881474 TCTxACG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098977 0.099721 0.99254 21 0 0 7.143209 0.333333 0.02 -0.08768 6 3 170 82 60 60 0 0 TT 2.705397 9 0 232 0 KEEP - Map3k9 YES AA_1 chr12 83442906 83442906 A T exonic Sipa1l1 nonsynonymous SNV NM_172579:c.A918T:p.E306D exonic Sipa1l1 nonsynonymous SNV uc007ocz.1:c.A918T:p.E306D exonic ENSMUSG00000042700 nonsynonymous SNV ENSMUST00000053969:c.A918T:p.E306D 12qD1 NA NA chr12 83442906 AGAxCTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 66 0 0 18.237433 0.466667 0.02 -0.140299 8 7 222 194 60 60 0 0 AA 13.531829 45 0 1215 0 KEEP + Sipa1l1 YES AA_1 chr12 8505859 8505859 T A exonic Rhob stopgain SNV NM_007483:c.A580T:p.K194X exonic Rhob stopgain SNV uc007mzp.1:c.A580T:p.K194X exonic ENSMUSG00000054364 stopgain SNV ENSMUST00000067384:c.A580T:p.K194X 12qA1.1 NA NA chr12 8505859 CCTxGCA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 500 4 0 198.721734 0.384977 0.02 5.676367 131 82 3756 2213 60 60 0 0 TT 63.108817 210 0 5712 0 KEEP - Rhob YES AA_1 chr12 85292623 85292623 A G exonic 2410016O06Rik nonsynonymous SNV NM_023633:c.A982G:p.S328G exonic 2410016O06Rik nonsynonymous SNV uc007odz.2:c.A982G:p.S328G exonic ENSMUSG00000046791 nonsynonymous SNV ENSMUST00000053744:c.A982G:p.S328G 12qD1 NA NA chr12 85292623 CCGxGTG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 108 2 0 42.158064 0.313725 0.02 1.526311 35 16 996 483 60 60 0 0 AA 13.233656 44 0 1213 0 KEEP + 2410016O06Rik NO AA_1 chr12 86371491 86371491 A T exonic Ylpm1 stopgain SNV NM_178363:c.A4039T:p.R1347X exonic Ylpm1 stopgain SNV uc007ogd.1:c.A4039T:p.R1347X exonic ENSMUSG00000021244 stopgain SNV ENSMUST00000164558:c.A2665T:p.R889X 12qD2 NA NA chr12 86371491 TGGxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 95 0 0 42.212221 0.571429 0.02 -0.245449 12 16 356 429 60 60 0 0 AA 16.543659 55 0 1538 0 KEEP + Ylpm1 YES AA_1 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 222 6 80 7.137316 0.083333 0.02 -0.438505 44 4 1300 112 54 29 0 0 CC 42.407478 141 0 3985 0 KEEP - Gm2042 NO AA_1 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 268 9 76 6.362296 0.088889 0.02 -0.411846 41 4 1100 103 60 29 0 0 TT 52.605102 175 0 4658 0 KEEP - Gm2042 NO AA_1 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 249 9 34 13.621467 0.139535 0.02 -0.385659 37 6 1021 183 60 37 0 0 TT 54.737132 182 0 4974 0 KEEP - Gm2042 NO AA_1 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 87 2 1 13.76191 0.222222 0.02 -0.253702 21 6 570 171 60 60 0 0 CC 13.23384 44 0 1211 0 KEEP - Gm2042 NO AA_1 chr12 92885917 92885917 T A exonic Ston2 nonsynonymous SNV NM_175367:c.A2156T:p.Q719L exonic Ston2 nonsynonymous SNV uc007okt.2:c.A2156T:p.Q719L exonic ENSMUSG00000020961 nonsynonymous SNV ENSMUST00000164713:c.A2156T:p.Q719L 12qD3 NA NA chr12 92885917 ACCxGAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053885 0.054137 0.995343 22 0 0 11.399813 0.5 0.02 -0.070161 4 4 114 119 60 60 0 0 TT 4.209556 14 0 377 0 KEEP - Ston2 YES AA_1 chr13 101064741 101064741 T A exonic "Naip6,Naip7" nonsynonymous SNV NM_010871:c.A3542T:p.K1181M exonic "Naip6,Naip7" nonsynonymous SNV uc007rqo.1:c.A1430T:p.K477M exonic ENSMUSG00000078942 nonsynonymous SNV ENSMUST00000109357:c.A1430T:p.K477M 13qD1 "Score=0.971217;Name=No.34881,chr13:100982499" NA chr13 101064741 TTCxTGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 141 2 0 8.381018 0.181818 0.02 -0.192904 18 4 514 110 60 60 0 0 TT 28.875546 96 0 2687 0 KEEP - Naip6 YES AA_1 chr13 103540736 103540736 T A intronic Mast4 NA NA intronic Mast4 NA NA intronic ENSMUSG00000034751 NA NA 13qD1 NA NA chr13 103540736 GAGxACA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 61 0 0 34.092391 0.631579 0.02 -0.1666 7 12 187 338 60 60 0 0 TT 9.621633 32 0 845 0 KEEP - Mast4 YES AA_1 chr13 104624680 104624680 T A exonic Erbb2ip nonsynonymous SNV NM_001005868:c.A2507T:p.Q836L exonic Erbb2ip nonsynonymous SNV uc007rsk.2:c.A2507T:p.Q836L exonic ENSMUSG00000021709 nonsynonymous SNV ENSMUST00000022222:c.A2507T:p.Q836L 13qD1 NA NA chr13 104624680 TTCxGTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 127 2 0 21.884049 0.290323 0.02 -0.271866 22 9 635 257 60 60 0 1 TT 24.954512 83 0 2271 0 KEEP - Erbb2ip YES AA_1 chr13 105899633 105899633 A T exonic 4933425L06Rik synonymous SNV NM_025751:c.A621T:p.A207A exonic 4933425L06Rik synonymous SNV uc007rtq.1:c.A621T:p.A207A exonic ENSMUSG00000021718 synonymous SNV ENSMUST00000022232:c.A621T:p.A207A 13qD1 NA NA chr13 105899633 AGCxGAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 75 0 0 23.158786 0.321429 0.02 -0.245552 19 9 542 265 60 60 0 0 AA 11.429518 38 0 1051 0 KEEP + 4933425L06Rik YES AA_1 chr13 107585688 107585688 T A UTR3 Ipo11 NA NA UTR3 Ipo11 NA NA UTR3 ENSMUSG00000042590 NA NA 13qD2.1 NA NA chr13 107585688 GGAxGGT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077168 0.077336 0.997832 29 0 0 14.400277 0.555556 0.02 -0.078922 4 5 107 147 60 60 0 0 TT 4.799728 16 0 416 0 KEEP - Ipo11 YES AA_1 chr13 109178931 109178931 A T UTR3 Depdc1b NA NA UTR3 Depdc1b NA NA UTR3 ENSMUSG00000021697 NA NA 13qD2.1 NA NA chr13 109178931 CAGxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 39 0 0 16.63705 0.6 0.02 -0.08769 4 6 116 167 60 60 0 0 AA 7.218366 24 0 660 0 KEEP + Depdc1b YES AA_1 chr13 19786263 19786263 A C intronic Nme8 NA NA intronic Txndc3 NA NA intronic ENSMUSG00000041138 NA NA 13qA2 NA NA chr13 19786263 TGGxGGA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 57 0 0 8.836696 0.555556 0.02 -0.095823 4 5 113 92 60 60 0 0 AA 11.73049 39 0 1095 0 KEEP - Nme8 NO AA_1 chr13 21105070 21105070 A T intronic Aoah NA NA intronic Aoah NA NA intronic ENSMUSG00000021322 NA NA 13qA2 NA NA chr13 21105070 ACCxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 40 0 0 15.865051 0.461538 0.02 -0.113996 7 6 193 169 60 60 0 0 AA 6.616458 22 0 597 0 KEEP + Aoah YES AA_1 chr13 25354186 25354186 A T exonic Nrsn1 stopgain SNV NM_009513:c.T75A:p.Y25X exonic Nrsn1 stopgain SNV uc007pwx.2:c.T75A:p.Y25X exonic ENSMUSG00000048978 stopgain SNV ENSMUST00000167305:c.T75A:p.Y25X 13qA3.1 NA NA chr13 25354186 TCCxTAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 60 0 0 41.871395 0.666667 0.02 -0.184168 7 14 197 410 60 60 0 0 AA 9.32119 31 0 826 0 KEEP - Nrsn1 YES AA_1 chr13 34987246 34987246 G A exonic Prpf4b nonsynonymous SNV NM_013830:c.G2233A:p.D745N exonic Prpf4b nonsynonymous SNV uc007qbp.2:c.G2233A:p.D745N exonic ENSMUSG00000021413 nonsynonymous SNV ENSMUST00000021850:c.G2245A:p.D749N 13qA3.3 NA NA chr13 34987246 CCTxATG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 206 2 0 60.753353 0.423729 0.02 1.169142 34 25 1004 663 60 60 0 0 GG 35.798958 119 0 3426 0 KEEP + Prpf4b NO AA_1 chr13 46886787 46886787 T A exonic Kif13a synonymous SNV NM_010617:c.A2706T:p.T902T exonic Kif13a synonymous SNV uc007qhn.1:c.A2706T:p.T902T exonic ENSMUSG00000021375 synonymous SNV ENSMUST00000056978:c.A2706T:p.T902T 13qA5 NA NA chr13 46886787 CACxGTA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.578892 0.58293 0.993072 41 1 0 19.947747 0.307692 0.02 -0.228018 18 8 518 231 60 60 0 0 TT 3.299065 11 0 287 0 KEEP - Kif13a YES AA_1 chr13 47173756 47173756 C G exonic Kdm1b nonsynonymous SNV NM_172262:c.C2121G:p.D707E exonic Kdm1b nonsynonymous SNV uc011yyy.1:c.C258G:p.D86E exonic ENSMUSG00000038080 nonsynonymous SNV ENSMUST00000064564:c.C1821G:p.D607E 13qA5 NA NA chr13 47173756 GGAxTCT C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 161 0 0 45.502125 0.386364 0.02 -0.38453 27 17 777 501 60 60 0 0 CC 27.975425 93 0 2637 0 KEEP + Kdm1b NO AA_1 chr13 49166320 49166320 T A intronic Wnk2 NA NA intronic Wnk2 NA NA intronic ENSMUSG00000037989 NA NA 13qA5 NA NA chr13 49166320 CACxCAC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 437 4 0 102.188782 0.297297 0.02 2.084342 104 44 2957 1203 60 60 0 0 TT 60.428548 201 0 5519 0 KEEP - Wnk2 YES AA_1 chr13 50740911 50740911 A T exonic Gm904 stoploss SNV NM_001033770:c.A309T:p.X103Y exonic Gm904 stoploss SNV uc007qld.1:c.A309T:p.X103Y exonic ENSMUSG00000074902 stoploss SNV ENSMUST00000099519:c.A309T:p.X103Y 13qA5 "Score=0.981096;Name=No.32792,chr13:50188950" NA chr13 50740911 ATAxGCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999999 75 0 9 38.564858 0.666667 0.02 -0.192893 7 14 203 377 60 60 0 0 AA 13.174577 44 0 1196 0 KEEP + Gm904 YES AA_1 chr13 56277893 56277893 C T exonic Tifab nonsynonymous SNV NM_001168615:c.G97A:p.A33T exonic Tifab nonsynonymous SNV uc007qsj.2:c.G97A:p.A33T exonic ENSMUSG00000049625 nonsynonymous SNV ENSMUST00000061504:c.G97A:p.A33T 13qB1 NA NA chr13 56277893 TGGxGTC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970819 0.97082 0.999999 102 0 0 51.985164 0.403846 0.02 1.230723 31 21 787 572 60 60 0 0 CC 10.515866 35 0 869 0 KEEP - Tifab NO AA_1 chr13 62108438 62108438 G C intergenic "BC052688(dist=219796),Zfp808(dist=122812)" NA NA intergenic "AK006455(dist=180554),A130040M12Rik(dist=76069)" NA NA intergenic "ENSMUSG00000080451(dist=183414),ENSMUSG00000092904(dist=1389)" NA NA 13qB3 "Score=0.960103;Name=No.33008,chr13:61865990" NA chr13 62108438 ACAxATG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291975 0.292001 0.999909 46 2 0 7.079325 0.1875 0.02 -0.149085 13 3 371 90 60 22 0 0 GG 7.219695 24 0 687 0 KEEP NA BC052688 NO AA_1 chr13 62489262 62489262 C G intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "ENSMUSG00000089002(dist=2850),ENSMUSG00000055228(dist=66421)" NA NA 13qB3 "Score=0.952824;Name=No.33007,chr13:61865461" NA chr13 62489262 TGTxCAA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 240 3 0 12.937896 0.105263 0.02 1.392243 51 6 1520 184 60 36 0 0 CC 41.211337 137 0 3888 0 KEEP NA Gm3604 NO AA_1 chr13 66955862 66955862 T A intergenic "2410141K09Rik(dist=413808),Uqcrb(dist=45695)" NA NA intergenic "AK049212(dist=101943),Uqcrb(dist=45695)" NA NA intronic ENSMUSG00000071295 NA NA 13qB3 "Score=0.980557;Name=No.34397,chr13:66750246" NA chr13 66955862 TACxTAT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 193 1 15 9.929439 1 0.02 -0.035075 0 3 0 85 0 23 0 0 TT 49.904069 166 0 4611 0 KEEP NA 2410141K09Rik YES AA_1 chr13 66955894 66955894 A G intergenic "2410141K09Rik(dist=413840),Uqcrb(dist=45663)" NA NA intergenic "AK049212(dist=101975),Uqcrb(dist=45663)" NA NA splicing ENSMUSG00000071295(ENSMUST00000079229:exon2:c.3+2T>C) NA NA 13qB3 "Score=0.980557;Name=No.34397,chr13:66750246" NA chr13 66955894 ATCxCCA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 168 1 17 8.626167 1 0.02 -0.035054 0 3 0 72 0 23 0 0 AA 41.491178 138 0 3682 0 KEEP NA 2410141K09Rik NO AA_1 chr13 74454663 74454663 T A UTR5 Pdcd6 NA NA UTR5 Pdcd6 NA NA UTR5 ENSMUSG00000021576 NA NA 13qC1 NA NA chr13 74454663 TGAxGCA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.775649 0.78106 0.993072 52 0 0 59.831553 0.606061 0.02 -0.29818 13 20 360 599 60 60 0 0 TT 3.308204 11 0 299 0 KEEP - Pdcd6 YES AA_1 chr13 76293150 76293150 A T exonic Ttc37 synonymous SNV NM_001081352:c.A3738T:p.T1246T exonic Ttc37 synonymous SNV uc007rgl.1:c.A1875T:p.T625T exonic ENSMUSG00000033991 synonymous SNV ENSMUST00000164405:c.A1473T:p.T491T 13qC1 NA NA chr13 76293150 TACxGCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 66 0 0 38.953117 0.684211 0.02 -0.166632 6 13 172 379 60 60 0 0 AA 10.226608 34 0 943 0 KEEP + Ttc37 YES AA_1 chr13 81732149 81732149 T A intronic Gpr98 NA NA intronic Gpr98 NA NA intronic ENSMUSG00000069170 NA NA 13qC3 NA NA chr13 81732149 GGGxGAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999999 51 0 0 14.499979 0.555556 0.02 -0.078929 4 5 111 148 60 60 0 0 TT 10.224151 34 0 907 0 KEEP - Gpr98 YES AA_1 chr13 93867449 93867449 T A exonic Cmya5 nonsynonymous SNV NM_023821:c.A1085T:p.Q362L exonic Cmya5 nonsynonymous SNV uc007rkw.2:c.A869T:p.Q290L exonic ENSMUSG00000047419 nonsynonymous SNV ENSMUST00000062122:c.A1085T:p.Q362L 13qC3 NA NA chr13 93867449 TGTxGTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 87 1 0 25.645613 0.357143 0.02 -0.245544 18 10 509 288 60 60 0 0 TT 14.136571 47 0 1299 0 KEEP - Cmya5 YES AA_1 chr13 94433769 94433769 T A exonic Bhmt2 nonsynonymous SNV NM_022884:c.A458T:p.E153V exonic Bhmt2 nonsynonymous SNV uc007rlk.1:c.A458T:p.E153V exonic ENSMUSG00000042118 nonsynonymous SNV ENSMUST00000015941:c.A458T:p.E153V 13qC3 NA NA chr13 94433769 TGCxCAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 59 0 0 42.834781 0.64 0.02 -0.2191 9 16 239 423 60 60 0 0 TT 9.023234 30 0 829 0 KEEP - Bhmt2 YES AA_1 chr13 97905230 97905230 T C intronic Nsa2 NA NA exonic Nsa2 nonsynonymous SNV uc007rnt.2:c.A361G:p.R121G intronic ENSMUSG00000060739 NA NA 13qD1 NA NA chr13 97905230 CTCxCGT T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 63 0 0 14.674771 0.5 0.02 -0.08771 5 5 149 153 60 60 0 0 TT 13.233335 44 0 1223 0 KEEP - Nsa2 NO AA_1 chr13 98515172 98515172 T A intergenic "Gm5086(dist=161223),Arhgef28(dist=153378)" NA NA ncRNA_intronic "AK030468,AK045624" NA NA ncRNA_intronic ENSMUSG00000054944 NA NA 13qD1 NA NA chr13 98515172 AACxTGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099717 0.099721 0.999957 44 1 0 10.122157 0.444444 0.02 -0.087688 5 4 144 109 60 60 0 0 TT 7.818976 26 0 716 0 KEEP - Gm5086 YES AA_1 chr13 98723822 98723822 T A exonic Arhgef28 nonsynonymous SNV NM_012026:c.A3143T:p.N1048I exonic Rgnef nonsynonymous SNV uc007rol.1:c.A2204T:p.N735I exonic ENSMUSG00000021662 nonsynonymous SNV ENSMUST00000022166:c.A3140T:p.N1047I 13qD1 NA NA chr13 98723822 TGGxTCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 122 0 0 27.597595 0.44 0.02 -0.219182 14 11 395 298 60 60 0 0 TT 21.354806 71 0 1958 0 KEEP - Arhgef28 YES AA_1 chr14 103943039 103943039 A T splicing Scel(NM_022886:exon8:c.405-2A>T) NA NA splicing "Scel(uc007uwq.1:exon8:c.405-2A>T,uc007uwr.1:exon8:c.405-2A>T,uc011zpl.1:exon8:c.405-2A>T)" NA NA splicing "ENSMUSG00000022123(ENSMUST00000110760:exon8:c.405-2A>T,ENSMUST00000095576:exon8:c.405-2A>T,ENSMUST00000110762:exon8:c.405-2A>T)" NA NA 14qE2.3 NA NA chr14 103943039 AACxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 99 0 0 72.10213 0.625 0.02 -0.350557 15 25 436 717 60 60 0 0 AA 13.529093 45 0 1228 0 KEEP + Scel YES AA_1 chr14 109312252 109312252 A T exonic Slitrk1 nonsynonymous SNV NM_199065:c.T243A:p.F81L exonic Slitrk1 nonsynonymous SNV uc007uyc.1:c.T243A:p.F81L exonic ENSMUSG00000075478 nonsynonymous SNV ENSMUST00000100322:c.T243A:p.F81L 14qE3 NA NA chr14 109312252 ATAxAAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 0.999998 58 0 0 23.604259 0.6 0.02 -0.140288 6 9 174 237 60 60 0 0 AA 10.22651 34 0 949 0 KEEP - Slitrk1 YES AA_1 chr14 121501312 121501312 C A exonic Farp1 synonymous SNV NM_134082:c.C79A:p.R27R exonic Farp1 synonymous SNV uc007vaa.1:c.C79A:p.R27R exonic ENSMUSG00000025555 synonymous SNV ENSMUST00000026635:c.C79A:p.R27R 14qE5 NA NA chr14 121501312 GAAxGAG C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 295 0 0 72.134599 0.278846 0.02 2.864943 75 29 1856 850 60 60 0 0 CC 47.160967 157 0 3807 0 KEEP + Farp1 NO AA_1 chr14 121701488 121701488 G A exonic Stk24 stopgain SNV NM_145465:c.C517T:p.Q173X exonic Stk24 stopgain SNV uc007vac.1:c.C517T:p.Q173X exonic ENSMUSG00000063410 stopgain SNV ENSMUST00000079817:c.C517T:p.Q173X 14qE5 NA NA chr14 121701488 TCTxGGT G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 207 0 0 143.791246 0.411765 0.02 2.466736 80 56 2384 1571 60 60 0 0 GG 12.934971 43 0 1221 0 KEEP - Stk24 NO AA_1 chr14 121888994 121888994 C T intronic Slc15a1 NA NA intronic Slc15a1 NA NA intronic ENSMUSG00000025557 NA NA 14qE5 NA NA chr14 121888994 CAGxAGT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 186 1 0 69.379848 0.326087 0.02 0.879746 62 30 1856 803 60 60 0 0 CC 13.934119 56 1 1549 27 KEEP - Slc15a1 NO AA_1 chr14 121993545 121993545 T A intronic Dock9 NA NA intronic Dock9 NA NA intronic ENSMUSG00000025558 NA NA 14qE5 NA NA chr14 121993545 GGAxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 162 2 0 48.366854 0.322034 0.02 1.374858 40 19 1107 554 60 60 0 0 TT 22.846255 76 0 2033 0 KEEP - Dock9 YES AA_1 chr14 21084495 21084495 A T exonic Kcnk16 nonsynonymous SNV NM_029006:c.T221A:p.L74Q exonic Kcnk16 nonsynonymous SNV uc011zgl.1:c.T221A:p.L74Q exonic ENSMUSG00000023387 nonsynonymous SNV ENSMUST00000024155:c.T221A:p.L74Q 14qA3 NA NA chr14 21084495 TCCxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 101 4 0 48.445188 0.365385 0.02 1.320171 33 19 941 542 60 60 0 0 AA 11.123236 37 0 1013 0 KEEP - Kcnk16 YES AA_1 chr14 21537608 21537608 G C intronic Zswim8 NA NA intronic 2310021P13Rik NA NA intronic ENSMUSG00000021819 NA NA 14qA3 NA NA chr14 21537608 TCAxGAA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986151 0.986153 0.999998 95 0 0 20.980898 0.175439 0.02 1.276082 47 10 1424 277 60 60 0 0 GG 9.927626 33 0 951 0 KEEP + Zswim8 NO AA_1 chr14 26280913 26280913 A G intronic Zmiz1 NA NA intronic Zmiz1 NA NA intronic ENSMUSG00000007817 NA NA 14qA3 NA NA chr14 26280913 TGGxCAC A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 507 9 0 234.0674 0.350195 0.02 7.66717 167 90 4614 2634 60 60 0 0 AA 47.17894 157 0 4263 0 KEEP + Zmiz1 NO AA_1 chr14 26407052 26407052 A T ncRNA_exonic 4931406H21Rik NA NA ncRNA_exonic 4931406H21Rik NA NA intronic ENSMUSG00000007817 NA NA 14qA3 NA NA chr14 26407052 AGGxCAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 445 3 0 270.28854 0.54 0.02 5.102282 92 108 2474 2789 60 60 0 0 AA 49.566007 165 0 4350 0 KEEP + 4931406H21Rik YES AA_1 chr14 32097778 32097778 A T exonic Dnah1 nonsynonymous SNV NM_001033668:c.T6626A:p.L2209Q exonic Dnahc1 nonsynonymous SNV uc007sxk.2:c.T6626A:p.L2209Q exonic ENSMUSG00000019027 nonsynonymous SNV ENSMUST00000048603:c.T6626A:p.L2209Q 14qB NA NA chr14 32097778 CACxGCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999976 0.999978 0.999999 157 7 0 69.481643 0.3 0.02 2.692661 70 30 2029 817 60 60 0 0 AA 10.52753 35 0 973 0 KEEP - Dnah1 YES AA_1 chr14 32480799 32480799 C T exonic Btd synonymous SNV NM_025295:c.C1290T:p.D430D exonic Btd synonymous SNV uc007sxy.2:c.C1290T:p.D430D exonic ENSMUSG00000021900 synonymous SNV ENSMUST00000090147:c.C1290T:p.D430D 14qB NA NA chr14 32480799 TGAxGGA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 150 2 0 65.495469 0.369863 0.02 1.055445 46 27 1157 735 60 60 0 0 CC 20.061847 67 0 1587 0 KEEP + Btd NO AA_1 chr14 35840005 35840005 A T exonic Grid1 stopgain SNV NM_008166:c.A595T:p.K199X exonic Grid1 stopgain SNV uc007tbj.1:c.A595T:p.K199X exonic ENSMUSG00000041078 stopgain SNV ENSMUST00000043349:c.A595T:p.K199X 14qB NA NA chr14 35840005 GACxAGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 71 0 0 40.624677 0.441176 0.02 -0.298118 19 15 529 436 60 60 0 0 AA 9.02243 30 0 818 0 KEEP + Grid1 YES AA_1 chr14 49028295 49028295 A T intergenic "Peli2(dist=147737),Tmem260(dist=37732)" NA NA intergenic "Peli2(dist=147737),6720456H20Rik(dist=37508)" NA NA intergenic "ENSMUSG00000080522(dist=44218),ENSMUSG00000036339(dist=37508)" NA NA 14qC1 "Score=0.987138;Name=No.57328,chrY_random:25801566" NA chr14 49028295 CGTxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 365 2 0 207.444478 0.654545 0.02 2.524219 38 72 1049 2039 60 60 0 0 AA 62.809256 209 0 5583 0 KEEP NA Peli2 YES AA_1 chr14 50549083 50549083 A T exonic Olfr723 synonymous SNV NM_001011530:c.T135A:p.I45I exonic Olfr723 synonymous SNV uc007tkm.2:c.T135A:p.I45I exonic ENSMUSG00000090343 synonymous SNV ENSMUST00000164157:c.T135A:p.I45I 14qC1 "Score=0.939885;Name=No.53336,chr14:50574284" NA chr14 50549083 TATxATA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 92 1 15 16.367449 0.269231 0.02 -0.236545 19 7 507 196 60 60 0 0 AA 17.744185 59 0 1605 0 KEEP - Olfr723 YES AA_1 chr14 52036477 52036477 C T exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C1640T:p.P547L exonic Vmn2r88 nonsynonymous SNV uc009vao.1:c.C1640T:p.P547L exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000159674:c.C1481T:p.P494L 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52036477 GCCxAGA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 390 22 12 7.01648 0.102564 0.02 -0.377123 35 4 1048 107 60 60 0 0 CC 86.019164 286 0 8140 0 KEEP + Vmn2r88 NO AA_1 chr14 52832338 52832338 T A exonic Chd8 nonsynonymous SNV NM_201637:c.A4633T:p.T1545S exonic Chd8 nonsynonymous SNV uc007tou.1:c.A706T:p.T236S exonic ENSMUSG00000053754 nonsynonymous SNV ENSMUST00000089752:c.A4633T:p.T1545S 14qC2 NA NA chr14 52832338 AAGxACT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 61 2 0 12.804574 0.25 0.02 -0.22778 18 6 459 158 60 60 0 0 TT 8.415868 28 0 726 0 KEEP + Chd8 YES AA_1 chr14 53373465 53373465 A T intergenic "Olfr1507(dist=258095),A430107P09Rik(dist=912150)" NA NA intronic Gm10905 NA NA exonic ENSMUSG00000076768 nonsynonymous SNV ENSMUST00000103577:c.A291T:p.L97F 14qC2 "Score=0.969859;Name=No.53366,chr14:54000000" NA chr14 53373465 CTTxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 165 0 7 73.543944 0.574468 0.02 -0.411975 20 27 532 746 60 60 0 0 AG 25.425497 88 1 2367 9 KEEP + Olfr1507 YES AA_1 chr14 54081069 54081069 T A intergenic "Olfr1507(dist=965699),A430107P09Rik(dist=204546)" NA NA ncRNA_intronic "TCRA,TCR[alpha]" NA NA intronic ENSMUSG00000076830 NA NA 14qC2 "Score=0.969859;Name=No.53366,chr14:53293662" NA chr14 54081069 TGTxAGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 393 1 20 95.615717 0.298507 0.02 2.412171 94 40 2540 1120 60 60 0 0 TT 63.137256 210 0 5671 0 KEEP + Olfr1507 YES AA_1 chr14 55610671 55610671 T A intronic Myh7 NA NA intronic Myh7 NA NA intronic ENSMUSG00000053093 NA NA 14qC3 NA NA chr14 55610671 GGCxTAC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999998 114 0 26 27.561384 0.26087 0.02 -0.412139 34 12 976 333 36 36 0 0 TT 14.102557 47 0 1287 0 KEEP - Myh7 YES AA_1 chr14 56223992 56223992 A T exonic Irf9 stopgain SNV NM_001159418:c.A157T:p.K53X exonic Irf9 stopgain SNV uc007tzl.2:c.A103T:p.K35X exonic ENSMUSG00000002325 stopgain SNV ENSMUST00000130697:c.A103T:p.K35X 14qC3 NA NA chr14 56223992 GCCxAGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 54 0 0 17.148782 0.291667 0.02 -0.210469 17 7 483 201 60 60 0 0 AA 6.901837 23 0 610 0 KEEP + Irf9 YES AA_1 chr14 61986538 61986538 T A exonic Kpna3 nonsynonymous SNV NM_008466:c.A1496T:p.E499V exonic Kpna3 nonsynonymous SNV uc007ufw.2:c.A1496T:p.E499V exonic ENSMUSG00000021929 nonsynonymous SNV ENSMUST00000022496:c.A1496T:p.E499V 14qD1 NA NA chr14 61986538 GCTxCTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999997 41 0 0 6.71736 0.5 0.02 -0.052546 3 3 87 71 60 60 0 0 TT 8.723491 29 0 818 0 KEEP - Kpna3 YES AA_1 chr15 100841557 100841557 T A exonic Scn8a nonsynonymous SNV NM_011323:c.T2474A:p.L825H exonic Scn8a nonsynonymous SNV uc007xsj.2:c.T2474A:p.L825H exonic ENSMUSG00000023033 nonsynonymous SNV ENSMUST00000108908:c.T1472A:p.L491H 15qF2 NA NA chr15 100841557 CCCxCAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 133 4 0 80.755645 0.534483 0.02 1.178068 27 31 789 834 60 60 1 0 TT 18.646612 62 0 1725 0 KEEP + Scn8a YES AA_1 chr15 101363075 101363075 A T exonic Krt84 nonsynonymous SNV NM_008474:c.T112A:p.C38S exonic Krt84 nonsynonymous SNV uc007xtm.2:c.T112A:p.C38S exonic ENSMUSG00000044294 nonsynonymous SNV ENSMUST00000023720:c.T112A:p.C38S 15qF2 NA NA chr15 101363075 TGCxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 215 4 0 160.997446 0.472 0.02 2.670615 66 59 1889 1704 60 60 0 0 AA 17.889594 64 1 1759 12 KEEP - Krt84 YES AA_1 chr15 102260508 102260508 A T exonic Sp1 synonymous SNV NM_013672:c.A1959T:p.P653P exonic Sp1 synonymous SNV uc007xvo.1:c.A1959T:p.P653P exonic ENSMUSG00000001280 synonymous SNV ENSMUST00000001326:c.A1959T:p.P653P 15qF3 NA NA chr15 102260508 GCCxTTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.13983 0.139832 0.999988 47 2 0 10.685342 0.4 0.02 -0.105238 6 4 173 117 60 60 0 0 AA 8.119901 27 0 729 0 KEEP + Sp1 YES AA_1 chr15 10882235 10882235 G C exonic C1qtnf3 nonsynonymous SNV NM_001204134:c.G27C:p.W9C exonic C1qtnf3 nonsynonymous SNV uc007vgu.2:c.G27C:p.W9C exonic ENSMUSG00000058914 nonsynonymous SNV ENSMUST00000022853:c.G27C:p.W9C 15qA1 NA NA chr15 10882235 GTGxCAC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 397 3 0 194.413159 0.447853 0.02 4.212959 90 73 2613 2083 60 60 0 0 GG 49.499423 165 0 4502 0 KEEP + C1qtnf3 NO AA_1 chr15 27771610 27771610 A G intronic Trio NA NA intronic Trio NA NA intronic ENSMUSG00000022263 NA NA 15qB1 NA NA chr15 27771610 ACGxGAA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 134 2 0 57.509839 0.411765 0.02 1.543855 30 21 875 625 60 60 0 0 AA 18.64915 62 0 1734 0 KEEP - Trio NO AA_1 chr15 63690739 63690739 T A intronic Gsdmc3 NA NA intronic "Gsdmc2,Gsdmc3" NA NA intronic ENSMUSG00000055827 NA NA 15qD1 "Score=0.915558;Name=No.57788,chr15:63605768" NA chr15 63690739 ATGxATT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999997 77 0 0 61.639696 0.55 0.02 -0.350751 18 22 481 631 60 60 0 0 TT 9.623201 32 0 858 0 KEEP - Gsdmc3 YES AA_1 chr15 63691748 63691748 C G intronic Gsdmc3 NA NA intronic "Gsdmc2,Gsdmc3" NA NA intronic ENSMUSG00000055827 NA NA 15qD1 "Score=0.915558;Name=No.57788,chr15:63605768" NA chr15 63691748 TCTxTAG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 115 0 0 37.573887 0.411765 0.02 -0.298203 20 14 601 409 60 60 0 0 CC 18.343184 61 0 1739 0 KEEP - Gsdmc3 NO AA_1 chr15 66468368 66468368 A T exonic Phf20l1 nonsynonymous SNV NM_001081409:c.A2510T:p.K837M exonic Phf20l1 nonsynonymous SNV uc007wao.1:c.A263T:p.K88M exonic ENSMUSG00000072501 nonsynonymous SNV ENSMUST00000048188:c.A2510T:p.K837M 15qD2 NA NA chr15 66468368 GGAxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 72 1 0 19.605314 0.636364 0.02 -0.105236 4 7 119 194 60 60 0 0 AA 13.53408 45 0 1242 0 KEEP + Phf20l1 YES AA_1 chr15 74669681 74669681 T A exonic Cyp11b1 nonsynonymous SNV NM_001033229:c.A577T:p.S193C exonic Cyp11b1 nonsynonymous SNV uc007wge.2:c.A577T:p.S193C exonic ENSMUSG00000075604 nonsynonymous SNV ENSMUST00000100548:c.A571T:p.S191C 15qD3 NA NA chr15 74669681 CACxGGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999998 72 2 0 30.532437 0.478261 0.02 -0.201709 12 11 346 322 60 60 0 0 TT 10.226755 34 0 945 0 KEEP - Cyp11b1 YES AA_1 chr15 74669683 74669683 G A exonic Cyp11b1 nonsynonymous SNV NM_001033229:c.C575T:p.S192F exonic Cyp11b1 nonsynonymous SNV uc007wge.2:c.C575T:p.S192F exonic ENSMUSG00000075604 nonsynonymous SNV ENSMUST00000100548:c.C569T:p.S190F 15qD3 NA NA chr15 74669683 CTGxACT G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999998 71 2 0 29.931604 0.478261 0.02 -0.201718 12 11 358 316 60 60 0 0 GG 10.227509 34 0 965 0 KEEP - Cyp11b1 NO AA_1 chr15 76011090 76011090 C G exonic Plec nonsynonymous SNV NM_011117:c.G5362C:p.A1788P exonic Plec nonsynonymous SNV uc007wir.2:c.G5275C:p.A1759P exonic ENSMUSG00000022565 nonsynonymous SNV ENSMUST00000023226:c.G5275C:p.A1759P 15qD3 NA NA chr15 76011090 CTGxCCG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 234 1 0 44.625282 0.146853 0.02 2.431624 122 21 3579 605 60 60 0 0 CC 15.640834 52 0 1446 0 KEEP - Plec NO AA_1 chr15 76464179 76464179 T A intronic Tonsl NA NA ncRNA_intronic Nfkbil2 NA NA intronic ENSMUSG00000059323 NA NA 15qD3 NA NA chr15 76464179 CTCxATC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 431 5 0 279.301408 0.481651 0.02 4.932625 113 105 3254 2948 60 60 0 0 TT 40.256754 134 0 3655 0 KEEP - Tonsl YES AA_1 chr15 77605671 77605671 C G exonic Myh9 nonsynonymous SNV NM_022410:c.G2671C:p.A891P exonic Myh9 nonsynonymous SNV uc011zvk.1:c.G247C:p.A83P exonic ENSMUSG00000022443 nonsynonymous SNV ENSMUST00000109752:c.G280C:p.A94P 15qE1 NA NA chr15 77605671 CCGxCTG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 180 2 0 171.162176 0.516667 0.02 2.903549 58 62 1746 1777 60 60 0 0 CC 12.030556 40 0 1103 0 KEEP - Myh9 NO AA_1 chr15 77613845 77613845 T C exonic Myh9 nonsynonymous SNV NM_022410:c.A1817G:p.K606R exonic Myh9 nonsynonymous SNV uc007woc.1:c.A1817G:p.K606R exonic ENSMUSG00000022443 nonsynonymous SNV ENSMUST00000016771:c.A1817G:p.K606R 15qE1 NA NA chr15 77613845 AACxTGT T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 218 4 0 45.046644 0.152672 0.02 2.815929 111 20 3199 598 60 60 0 1 TT 13.53602 45 0 1262 0 KEEP - Myh9 NO AA_1 chr15 78177901 78177901 A T exonic Csf2rb nonsynonymous SNV NM_007780:c.A1571T:p.Q524L exonic Csf2rb nonsynonymous SNV uc007wpa.2:c.A1571T:p.Q524L exonic ENSMUSG00000071713 nonsynonymous SNV ENSMUST00000096355:c.A1571T:p.Q524L 15qE1 "Score=0.911766;Name=No.57810,chr15:78111728" NA chr15 78177901 AGCxACA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851867 0.851984 0.999863 71 0 9 22.395606 0.27027 0.02 -0.333209 27 10 767 270 60 60 0 0 AA 6.616979 22 0 606 0 KEEP + Csf2rb YES AA_1 chr15 78804183 78804183 A T exonic Triobp nonsynonymous SNV NM_001039156:c.A3553T:p.N1185Y exonic Triobp nonsynonymous SNV uc007wry.1:c.A3553T:p.N1185Y exonic ENSMUSG00000033088 nonsynonymous SNV ENSMUST00000089366:c.A3553T:p.N1185Y 15qE1 NA NA chr15 78804183 GAGxACT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999801 0.999804 0.999997 136 0 0 94.848058 0.443182 0.02 0.817266 49 39 1350 1025 60 60 0 0 AA 9.293421 31 0 817 0 KEEP + Triobp YES AA_1 chr15 79431945 79431945 A T splicing "Dmc1(NM_010059:exon4:c.96+2T>A,NM_001278226:exon4:c.96+2T>A)" NA NA splicing "Dmc1(uc007wtu.1:exon4:c.96+2T>A,uc007wtv.1:exon4:c.96+2T>A)" NA NA splicing "ENSMUSG00000022429(ENSMUST00000023065:exon4:c.96+2T>A,ENSMUST00000080992:exon4:c.96+2T>A)" NA NA 15qE1 NA NA chr15 79431945 CTCxCAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 99 1 0 27.03199 0.434783 0.02 -0.210472 13 10 365 291 60 60 0 0 AA 16.539736 55 0 1483 0 KEEP - Dmc1 YES AA_1 chr15 79921875 79921875 T A exonic Syngr1 nonsynonymous SNV NM_009303:c.T52A:p.Y18N exonic Syngr1 nonsynonymous SNV uc007wvc.1:c.T52A:p.Y18N exonic ENSMUSG00000022415 nonsynonymous SNV ENSMUST00000009727:c.T52A:p.Y18N 15qE1 NA NA chr15 79921875 CCCxACA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 74 0 0 20.605997 0.346154 0.02 -0.227941 17 9 500 236 60 60 0 0 TT 8.323588 28 0 692 0 KEEP + Syngr1 YES AA_1 chr15 81443892 81443892 A T intronic Ep300 NA NA intronic Ep300 NA NA intronic ENSMUSG00000055024 NA NA 15qE1 NA NA chr15 81443892 AACxTAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 66 4 0 46.166566 0.586207 0.02 -0.262945 12 17 304 466 60 60 0 0 AA 8.720774 29 0 776 0 KEEP + Ep300 YES AA_1 chr15 82284079 82284079 A G exonic Cyp2d9 nonsynonymous SNV NM_010006:c.A241G:p.M81V exonic Cyp2d9 nonsynonymous SNV uc007wzg.2:c.A241G:p.M81V exonic ENSMUSG00000068086 nonsynonymous SNV ENSMUST00000089129:c.A241G:p.M81V 15qE1 "Score=0.919949;Name=No.57813,chr15:82218784" NA chr15 82284079 CCTxTGG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 159 3 1 75.52219 0.424242 0.02 1.412374 38 28 1017 817 60 60 0 0 AA 19.819858 66 0 1730 0 KEEP + Cyp2d9 NO AA_1 chr15 84851809 84851809 A T exonic Upk3a nonsynonymous SNV NM_023478:c.A688T:p.I230F exonic Upk3a nonsynonymous SNV uc007xcs.2:c.A688T:p.I230F exonic ENSMUSG00000022435 nonsynonymous SNV ENSMUST00000023070:c.A688T:p.I230F 15qE2 NA NA chr15 84851809 GCCxTCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979523 0.979526 0.999997 96 2 0 82.647898 0.545455 0.02 1.401166 25 30 672 848 60 60 0 0 AA 8.420488 28 0 754 0 KEEP + Upk3a YES AA_1 chr15 84963309 84963309 A T exonic Ribc2 synonymous SNV NM_026357:c.A117T:p.G39G exonic Ribc2 synonymous SNV uc007xcz.2:c.A117T:p.G39G exonic ENSMUSG00000022431 synonymous SNV ENSMUST00000023067:c.A117T:p.G39G 15qE2 NA NA chr15 84963309 GGGxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 62 0 0 24.938098 0.5 0.02 -0.175298 10 10 295 262 60 60 0 0 AA 8.119556 27 0 747 0 KEEP + Ribc2 YES AA_1 chr15 85647453 85647453 T A exonic Pkdrej nonsynonymous SNV NM_011105:c.A4711T:p.R1571W exonic Pkdrej nonsynonymous SNV uc007xdm.1:c.A4711T:p.R1571W exonic ENSMUSG00000052496 nonsynonymous SNV ENSMUST00000064370:c.A4711T:p.R1571W 15qE2 NA NA chr15 85647453 GCCxGAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 93 2 0 54.901311 0.487805 0.02 -0.36834 21 20 612 577 60 60 0 0 TT 10.808492 36 0 962 0 KEEP - Pkdrej YES AA_1 chr15 89138551 89138551 T A exonic Sbf1 nonsynonymous SNV NM_001081030:c.A181T:p.N61Y exonic Sbf1 nonsynonymous SNV uc007xfz.1:c.A181T:p.N61Y exonic ENSMUSG00000036529 nonsynonymous SNV ENSMUST00000109324:c.A181T:p.N61Y 15qE3 NA NA chr15 89138551 GATxCCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941618 0.941741 0.999869 74 4 0 74.791683 0.622222 0.02 -0.403217 17 28 469 744 60 60 0 0 TT 6.316659 21 0 587 0 KEEP - Sbf1 YES AA_1 chr15 94182192 94182192 T A exonic Adamts20 nonsynonymous SNV NM_001164785:c.A1374T:p.E458D exonic Adamts20 nonsynonymous SNV uc007xje.2:c.A1374T:p.E458D exonic ENSMUSG00000022449 nonsynonymous SNV ENSMUST00000035342:c.A1374T:p.E458D 15qE3 NA NA chr15 94182192 GCAxTCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351495 0.353947 0.993072 34 0 0 22.783032 0.473684 0.02 -0.166597 10 9 278 242 60 60 0 0 TT 3.308173 11 0 301 0 KEEP - Adamts20 YES AA_1 chr15 95786319 95786319 C T intronic Ano6 NA NA intronic Ano6 NA NA intronic ENSMUSG00000064210 NA NA 15qF1 NA NA chr15 95786319 TGAxAGA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 51 0 0 23.227022 0.5625 0.02 -0.149054 7 9 198 237 60 60 0 0 CC 9.322698 31 0 837 0 KEEP + Ano6 NO AA_1 chr15 98679840 98679840 T A exonic Kmt2d nonsynonymous SNV NM_001033276:c.A10033T:p.M3345L exonic Mll2 nonsynonymous SNV uc007xoc.2:c.A10033T:p.M3345L exonic ENSMUSG00000048154 nonsynonymous SNV ENSMUST00000023741:c.A10033T:p.M3345L 15qF1 NA NA chr15 98679840 CCAxAGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 212 6 0 145.446593 0.413043 0.02 2.34257 81 57 2137 1589 60 60 0 0 TT 15.335432 51 0 1350 0 KEEP - Kmt2d YES AA_1 chr15 99070161 99070161 T A exonic Kcnh3 nonsynonymous SNV NM_010601:c.T2305A:p.C769S exonic Kcnh3 nonsynonymous SNV uc007xoz.1:c.T100A:p.C34S exonic ENSMUSG00000037579 nonsynonymous SNV ENSMUST00000041415:c.T2305A:p.C769S 15qF1 NA NA chr15 99070161 GGCxGTA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 208 5 0 122.037992 0.379845 0.02 2.439399 80 49 2337 1359 60 60 0 0 TT 12.326233 41 0 1123 0 KEEP + Kcnh3 YES AA_1 chr15 99636915 99636915 T A exonic Lima1 nonsynonymous SNV NM_023063:c.A323T:p.K108M exonic Lima1 nonsynonymous SNV uc007xqh.2:c.A323T:p.K108M exonic ENSMUSG00000023022 nonsynonymous SNV ENSMUST00000109024:c.A323T:p.K108M 15qF1 NA NA chr15 99636915 TCCxTTA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 46 0 0 27.929679 0.478261 0.02 -0.201667 12 11 343 296 60 60 0 0 TT 5.113555 17 0 476 0 KEEP - Lima1 YES AA_1 chr16 16780672 16780672 A T intronic Spag6 NA NA intronic "BC061194,Spag6" NA NA intronic ENSMUSG00000022783 NA NA 16qA3 NA NA chr16 16780672 ACCxTAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099708 0.099721 0.999869 34 0 0 17.638822 0.6 0.02 -0.087701 4 6 114 177 60 60 0 0 AA 6.315607 21 0 569 0 KEEP - Spag6 YES AA_1 chr16 22469298 22469298 T A UTR3 Dgkg NA NA UTR3 Dgkg NA NA UTR3 ENSMUSG00000022861 NA NA 16qB1 NA NA chr16 22469298 CAGxAGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077168 0.077336 0.997832 28 0 0 7.043314 0.333333 0.02 -0.078915 6 3 165 81 60 60 0 0 TT 4.80558 16 0 400 0 KEEP - Dgkg YES AA_1 chr16 23613069 23613069 G A exonic Rtp4 nonsynonymous SNV NM_023386:c.G264A:p.M88I exonic Rtp4 nonsynonymous SNV uc007ytw.2:c.G264A:p.M88I exonic ENSMUSG00000033355 nonsynonymous SNV ENSMUST00000038423:c.G264A:p.M88I 16qB1 NA NA chr16 23613069 CATxAGG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 59 0 0 44.40222 0.592593 0.02 -0.236779 11 16 325 447 60 60 0 0 GG 9.325886 31 0 891 0 KEEP + Rtp4 NO AA_1 chr16 29579660 29579660 A T intronic Opa1 NA NA intronic Opa1 NA NA intronic ENSMUSG00000038084 NA NA 16qB2 NA NA chr16 29579660 GGTxAGT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 288 10 0 137.477835 0.4 0.02 2.076306 87 58 2355 1522 60 60 0 0 AA 25.800244 86 0 2287 0 KEEP + Opa1 YES AA_1 chr16 35948323 35948323 A T exonic Parp9 synonymous SNV NM_030253:c.A786T:p.L262L exonic Parp9 synonymous SNV uc012afc.1:c.A87T:p.L29L exonic ENSMUSG00000022906 synonymous SNV ENSMUST00000023622:c.A87T:p.L29L 16qB3 NA NA chr16 35948323 CCTxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 89 1 0 40.649164 0.46875 0.02 -0.280622 17 15 479 431 60 60 0 0 AA 12.933212 43 0 1189 0 KEEP + Parp9 YES AA_1 chr16 45617032 45617032 A T exonic Gcsam nonsynonymous SNV NM_008099:c.A116T:p.Q39L exonic Gcet2 nonsynonymous SNV uc007zir.2:c.A116T:p.Q39L exonic ENSMUSG00000022659 nonsynonymous SNV ENSMUST00000023339:c.A116T:p.Q39L 16qB5 NA NA chr16 45617032 GACxAGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 114 3 0 28.653244 0.423077 0.02 -0.228 15 11 428 311 60 60 0 0 AA 19.223664 64 0 1750 0 KEEP + Gcsam YES AA_1 chr16 56267150 56267150 A T intronic Impg2 NA NA intronic Impg2 NA NA intronic ENSMUSG00000035270 NA NA 16qC1.1 NA NA chr16 56267150 TTGxGCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999997 47 0 0 13.274128 0.5 0.02 -0.087689 5 5 140 139 60 60 0 0 AA 9.023608 30 0 835 0 KEEP + Impg2 YES AA_1 chr16 59315216 59315216 T C exonic Olfr204 nonsynonymous SNV NM_146992:c.A16G:p.T6A exonic Olfr204 nonsynonymous SNV uc007zpb.1:c.A16G:p.T6A exonic ENSMUSG00000062942 nonsynonymous SNV ENSMUST00000072517:c.A16G:p.T6A 16qC1.3 NA NA chr16 59315216 GGGxGCT T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 222 0 0 72.715232 0.534483 0.02 1.384806 27 31 742 754 60 60 0 0 TT 41.192744 137 0 3688 0 KEEP - Olfr204 NO AA_1 chr16 8478092 8478092 C T exonic Mettl22 nonsynonymous SNV NM_146247:c.C151T:p.R51W exonic BC024814 nonsynonymous SNV uc007ycl.1:c.C151T:p.R51W exonic ENSMUSG00000039345 nonsynonymous SNV ENSMUST00000142899:c.C40T:p.R14W 16qA1 NA NA chr16 8478092 AGTxGGG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 126 2 0 86.257701 0.533333 0.02 1.267614 28 32 731 890 60 60 0 0 CC 14.128337 47 0 1246 0 KEEP + Mettl22 NO AA_1 chr16 87418785 87418785 A G exonic Ltn1 synonymous SNV NM_001081068:c.T1206C:p.S402S exonic Ltn1 synonymous SNV uc007zuh.1:c.T939C:p.S313S exonic ENSMUSG00000052299 synonymous SNV ENSMUST00000039449:c.T1206C:p.S402S 16qC3.3 NA NA chr16 87418785 AGAxGAG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053885 0.054137 0.995343 26 0 0 8.03264 0.375 0.02 -0.070167 5 3 150 89 60 60 0 0 AA 4.211246 14 0 394 0 KEEP - Ltn1 NO AA_1 chr16 91227864 91227864 T A UTR3 Olig2 NA NA UTR3 Olig2 NA NA UTR3 ENSMUSG00000039830 NA NA 16qC3.3 NA NA chr16 91227864 CATxGTA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 158 2 0 105.240575 0.59375 0.02 1.331055 26 38 728 1059 60 60 0 0 TT 19.533288 65 0 1776 0 KEEP + Olig2 YES AA_1 chr16 92348856 92348856 A T exonic Kcne1 nonsynonymous SNV NM_008424:c.T344A:p.V115E exonic Kcne1 nonsynonymous SNV uc007zza.1:c.T344A:p.V115E exonic ENSMUSG00000039639 nonsynonymous SNV ENSMUST00000051705:c.T344A:p.V115E 16qC4 NA NA chr16 92348856 TCTxCGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 116 0 0 78.543649 0.658537 0.02 -0.36831 14 27 388 771 60 60 0 0 AA 16.23659 54 0 1422 0 KEEP - Kcne1 YES AA_1 chr16 92613880 92613880 T C exonic Runx1 nonsynonymous SNV NM_009821:c.A658G:p.T220A exonic Runx1 nonsynonymous SNV uc012ain.1:c.A658G:p.T220A exonic ENSMUSG00000022952 nonsynonymous SNV ENSMUST00000113956:c.A658G:p.T220A 16qC4 NA NA chr16 92613880 TGGxCAT T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 179 3 0 63.421786 0.282609 0.02 1.176769 66 26 1750 748 60 60 0 0 TT 15.892417 53 0 1368 0 KEEP - Runx1 NO AA_1 chr16 93884689 93884689 A T intronic Chaf1b NA NA intronic Chaf1b NA NA UTR5 ENSMUSG00000022945 NA NA 16qC4 NA NA chr16 93884689 TTTxACT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999999 79 2 0 32.77236 0.448276 0.02 -0.253262 16 13 413 353 60 60 0 0 AA 10.52232 35 0 909 0 KEEP + Chaf1b YES AA_1 chr16 96233456 96233456 T A exonic Brwd1 synonymous SNV NM_001103179:c.A4458T:p.V1486V exonic "Brwd1,Wdr9" synonymous SNV uc008acm.1:c.A381T:p.V127V exonic ENSMUSG00000022914 synonymous SNV ENSMUST00000023631:c.A4458T:p.V1486V 16qC4 NA NA chr16 96233456 AGGxACC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 70 0 0 16.63807 0.6 0.02 -0.087686 4 6 109 167 60 60 0 0 TT 14.708124 52 1 1380 8 KEEP - Brwd1 YES AA_1 chr16 96869815 96869815 G T exonic Dscam nonsynonymous SNV NM_031174:c.C4189A:p.L1397I exonic Dscam nonsynonymous SNV uc008add.1:c.C4189A:p.L1397I exonic ENSMUSG00000050272 nonsynonymous SNV ENSMUST00000056102:c.C4189A:p.L1397I 16qC4 NA NA chr16 96869815 AGAxGGT G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 119 2 0 68.241331 0.5 0.02 1.230455 26 26 766 715 60 60 0 0 GG 11.431011 38 0 1079 0 KEEP - Dscam NO AA_1 chr16 97967736 97967736 A T intronic Ripk4 NA NA intronic Ripk4 NA NA intronic ENSMUSG00000005251 NA NA 16qC4 NA NA chr16 97967736 TGCxAAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 47 2 0 14.330641 0.26087 0.02 -0.210469 17 6 482 172 60 60 0 0 AA 5.399776 18 0 465 0 KEEP - Ripk4 YES AA_1 chr16 97967737 97967737 A T intronic Ripk4 NA NA intronic Ripk4 NA NA intronic ENSMUSG00000005251 NA NA 16qC4 NA NA chr16 97967737 GCAxAGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 46 2 0 13.302929 0.25 0.02 -0.219217 18 6 507 163 60 60 0 0 AA 5.412969 18 0 489 0 KEEP - Ripk4 YES AA_1 chr17 14534584 14534584 A T exonic Smoc2 nonsynonymous SNV NM_022315:c.A964T:p.T322S exonic Smoc2 nonsynonymous SNV uc008amy.2:c.A964T:p.T322S exonic ENSMUSG00000023886 nonsynonymous SNV ENSMUST00000024660:c.A964T:p.T322S 17qA2 NA NA chr17 14534584 TCCxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.888875 0.888875 1 132 2 1 51.569307 0.463415 0.02 -0.359528 22 19 612 548 60 60 0 0 AA 20.448346 68 0 1827 0 KEEP + Smoc2 YES AA_1 chr17 18381343 18381343 T G exonic Vmn2r94 nonsynonymous SNV NM_001104543:c.A1648C:p.I550L exonic Vmn2r94 nonsynonymous SNV uc009vax.1:c.A1648C:p.I550L exonic ENSMUSG00000090417 nonsynonymous SNV ENSMUST00000172190:c.A1648C:p.I550L 17qA3.2 NA NA chr17 18381343 CTAxGCT T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 352 1 0 90.043499 0.450704 0.02 1.368496 39 32 1065 960 60 60 0 0 TT 73.375192 244 0 6553 0 KEEP - Vmn2r94 NO AA_1 chr17 18381345 18381345 C T exonic Vmn2r94 nonsynonymous SNV NM_001104543:c.G1646A:p.S549N exonic Vmn2r94 nonsynonymous SNV uc009vax.1:c.G1646A:p.S549N exonic ENSMUSG00000090417 nonsynonymous SNV ENSMUST00000172190:c.G1646A:p.S549N 17qA3.2 NA NA chr17 18381345 ATGxTGC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 354 1 0 82.035298 0.450704 0.02 1.072612 39 32 1139 880 60 60 0 0 CC 72.788232 242 0 6759 0 KEEP - Vmn2r94 NO AA_1 chr17 23813506 23813506 T A exonic Tnfrsf12a nonsynonymous SNV NM_013749:c.A179T:p.H60L exonic Tnfrsf12a nonsynonymous SNV uc008asv.2:c.A179T:p.H60L exonic ENSMUSG00000023905 nonsynonymous SNV ENSMUST00000024698:c.A179T:p.H60L 17qA3.3 NA NA chr17 23813506 CTGxGTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.988129 0.993703 0.994391 96 5 0 65.433838 0.390625 0.02 1.322254 39 25 1072 721 60 60 0 0 TT 3.909432 13 0 349 0 KEEP - Tnfrsf12a YES AA_1 chr17 24416117 24416117 A T exonic Abca17 nonsynonymous SNV NM_001031621:c.T4190A:p.F1397Y exonic Abca17 nonsynonymous SNV uc008avk.1:c.T4190A:p.F1397Y exonic ENSMUSG00000035435 nonsynonymous SNV ENSMUST00000039324:c.T4190A:p.F1397Y 17qA3.3 NA NA chr17 24416117 CCAxAGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999998 88 3 0 74.672507 0.608696 0.02 -0.411362 18 28 508 747 60 60 0 0 AA 10.2264 34 0 940 0 KEEP - Abca17 YES AA_1 chr17 26084920 26084920 T A intergenic "Nhlrc4(dist=3044),Capn15(dist=11581)" NA NA exonic Nhlrc4 nonsynonymous SNV uc008bcv.1:c.A587T:p.Q196L exonic ENSMUSG00000025727 nonsynonymous SNV ENSMUST00000162431:c.A587T:p.Q196L 17qA3.3 NA NA chr17 26084920 CTCxGGG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998079 0.9982 0.999879 104 2 0 82.973303 0.424658 0.02 1.243209 42 31 1209 898 60 60 0 0 TT 6.614404 22 0 591 0 KEEP - Nhlrc4 YES AA_1 chr17 26096747 26096747 C G intronic Capn15 NA NA intronic Solh NA NA ncRNA_exonic ENSMUSG00000086285 NA NA 17qA3.3 NA NA chr17 26096747 GTAxCCA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 244 0 0 197.726685 0.489655 0.02 2.693119 74 71 2124 2075 60 60 0 0 CC 18.947653 63 0 1726 0 KEEP - Capn15 NO AA_1 chr17 26262227 26262227 A G exonic Mrpl28 nonsynonymous SNV NM_024227:c.A467G:p.K156R exonic Mrpl28 nonsynonymous SNV uc008bdl.2:c.A467G:p.K156R exonic ENSMUSG00000024181 nonsynonymous SNV ENSMUST00000025014:c.A467G:p.K156R 17qA3.3 NA NA chr17 26262227 CCAxGTT A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 211 4 0 174.117956 0.526786 0.02 2.991602 53 59 1502 1796 60 60 0 0 AA 17.719936 59 0 1624 0 KEEP + Mrpl28 NO AA_1 chr17 27248933 27248933 G C exonic Itpr3 nonsynonymous SNV NM_080553:c.G5269C:p.A1757P exonic Itpr3 nonsynonymous SNV uc008bfi.2:c.G5269C:p.A1757P exonic ENSMUSG00000042644 nonsynonymous SNV ENSMUST00000049308:c.G5269C:p.A1757P 17qA3.3 NA NA chr17 27248933 CTGxCCA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 269 8 0 43.554652 0.141844 0.02 2.629226 121 20 3547 590 60 60 0 1 GG 23.727584 79 0 2177 0 KEEP + Itpr3 NO AA_1 chr17 32654927 32654927 A T exonic Cyp4f17 nonsynonymous SNV NM_001101445:c.A287T:p.Y96F exonic Cyp4f17 nonsynonymous SNV uc012apb.1:c.A287T:p.Y96F exonic ENSMUSG00000091586 nonsynonymous SNV ENSMUST00000165999:c.A287T:p.Y96F 17qB1 NA NA chr17 32654927 TCTxCCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 95 0 0 49.156064 0.514286 0.02 -0.306896 17 18 459 511 60 60 0 0 AA 13.22241 44 0 1137 0 KEEP + Cyp4f17 YES AA_1 chr17 32768676 32768676 T A intronic Gm9705 NA NA intronic Gm9705 NA NA intronic ENSMUSG00000062464 NA NA 17qB1 "Score=0.936421;Name=No.65620,chr17:32672828" NA chr17 32768676 TCAxGTT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 71 0 0 28.043524 0.333333 0.02 -0.297414 22 11 602 319 60 60 0 0 TT 9.307833 31 0 827 0 KEEP + Gm9705 YES AA_1 chr17 32829383 32829383 A T exonic Cyp4f15 synonymous SNV NM_134127:c.A381T:p.V127V exonic Cyp4f15 synonymous SNV uc008bxk.1:c.A381T:p.V127V exonic ENSMUSG00000073424 synonymous SNV ENSMUST00000008801:c.A381T:p.V127V 17qB1 NA NA chr17 32829383 AGTxGTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 118 2 0 69.258013 0.52 0.02 1.248136 24 26 652 719 60 60 0 0 AA 15.034134 50 0 1358 0 KEEP + Cyp4f15 YES AA_1 chr17 33048557 33048557 G A intronic Cyp4f14 NA NA intronic Cyp4f14 NA NA intronic ENSMUSG00000024292 NA NA 17qB1 NA NA chr17 33048557 CCTxACC G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 184 0 0 13.612379 0.088889 0.02 0.808204 82 8 2366 215 60 60 0 0 GG 22.543151 75 0 2088 0 KEEP - Cyp4f14 NO AA_1 chr17 33203945 33203945 A T exonic 4921501E09Rik nonsynonymous SNV NM_001009544:c.T827A:p.L276Q exonic 4921501E09Rik nonsynonymous SNV uc008bxz.2:c.T827A:p.L276Q exonic ENSMUSG00000023350 nonsynonymous SNV ENSMUST00000024121:c.T827A:p.L276Q 17qB1 NA NA chr17 33203945 GTCxGGT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999998 52 0 0 25.830017 0.5625 0.02 -0.140327 7 9 207 263 60 60 0 0 AA 9.925961 33 0 918 0 KEEP - 4921501E09Rik YES AA_1 chr17 33570268 33570268 T A exonic Actl9 nonsynonymous SNV NM_183282:c.T356A:p.V119E exonic Actl9 nonsynonymous SNV uc008byl.1:c.T356A:p.V119E exonic ENSMUSG00000092519 nonsynonymous SNV ENSMUST00000174088:c.T356A:p.V119E 17qB1 NA NA chr17 33570268 TGGxGGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 204 2 0 126.88802 0.494845 0.02 0.926575 49 48 1330 1332 60 60 0 0 TT 26.162265 87 0 2332 0 KEEP + Actl9 YES AA_1 chr17 34320117 34320117 C G exonic Psmb9 nonsynonymous SNV NM_013585:c.G449C:p.G150A exonic Psmb9 nonsynonymous SNV uc008cbs.1:c.G449C:p.G150A exonic "ENSMUSG00000024337,ENSMUSG00000092299" nonsynonymous SNV ENSMUST00000076602:c.G449C:p.G150A 17qB1 NA NA chr17 34320117 CTTxCGG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780958 0.78106 0.999869 64 0 0 11.567085 0.15625 0.02 -0.297974 27 5 773 152 60 60 0 0 CC 6.014977 20 0 557 0 KEEP - Psmb9 NO AA_1 chr17 34503298 34503298 A T intronic Btnl2 NA NA intronic "Btnl2,IAP" NA NA intronic ENSMUSG00000024340 NA NA 17qB1 NA NA chr17 34503298 CTCxTCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 190 0 0 134.381867 0.522222 0.02 1.094433 43 47 1198 1390 60 60 0 0 AA 24.657484 82 0 2223 0 KEEP + Btnl2 YES AA_1 chr17 34609612 34609612 G A exonic Btnl4 stopgain SNV NM_030746:c.C847T:p.Q283X exonic Btn3a3 stopgain SNV uc012apz.1:c.C847T:p.Q283X exonic ENSMUSG00000058435 stopgain SNV ENSMUST00000065841:c.C847T:p.Q283X 17qB1 "Score=0.916967;Name=No.65644,chr17:34629137" NA chr17 34609612 GCTxCAC G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 131 1 0 59.307945 0.4 0.02 1.169063 36 24 1058 654 60 60 0 0 GG 16.195377 54 0 1468 0 KEEP - Btnl4 NO AA_1 chr17 34990339 34990339 C G intronic Nelfe NA NA intronic Rdbp NA NA intronic ENSMUSG00000024369 NA NA 17qB1 NA NA chr17 34990339 ATCxACG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.6681 0.668523 0.999366 58 1 0 16.398549 0.275862 0.02 -0.254295 21 8 626 200 60 60 0 0 CC 5.113913 17 0 483 0 KEEP + Nelfe NO AA_1 chr17 35060711 35060711 G C exonic Slc44a4 synonymous SNV NM_023557:c.G1143C:p.G381G exonic Slc44a4 synonymous SNV uc008ceh.2:c.G1143C:p.G381G exonic ENSMUSG00000007034 synonymous SNV ENSMUST00000169230:c.G687C:p.G229G 17qB1 NA NA chr17 35060711 CGGxCAA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 338 8 0 58.504829 0.161491 0.02 4.552511 135 26 4011 770 60 60 0 0 GG 36.959845 123 0 3386 0 KEEP + Slc44a4 NO AA_1 chr17 35152593 35152593 G C exonic Vars nonsynonymous SNV NM_011690:c.G3452C:p.G1151A exonic Vars nonsynonymous SNV uc008cey.2:c.G3452C:p.G1151A exonic ENSMUSG00000007029 nonsynonymous SNV ENSMUST00000087315:c.G3452C:p.G1151A 17qB1 NA NA chr17 35152593 CGGxCTA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 457 6 0 67.65101 0.131356 0.02 5.868594 205 31 6059 927 60 60 0 0 GG 40.878864 136 0 3679 0 KEEP + Vars NO AA_1 chr17 36598828 36598828 A T exonic H2-M10.4 nonsynonymous SNV NM_177634:c.T206A:p.M69K exonic H2-M10.4 nonsynonymous SNV uc008cla.1:c.T206A:p.M69K exonic ENSMUSG00000048231 nonsynonymous SNV ENSMUST00000057502:c.T206A:p.M69K 17qB1 NA NA chr17 36598828 TGCxTCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 222 2 0 71.108393 0.424242 0.02 1.214975 38 28 1036 773 60 60 0 0 AA 35.773981 119 0 3187 0 KEEP - H2-M10.4 YES AA_1 chr17 36871187 36871187 T G intergenic "H2-M1(dist=62045),H2-M10.5(dist=38668)" NA NA intergenic "H2-M1(dist=62045),H2-M10.5(dist=38668)" NA NA ncRNA_intronic ENSMUSG00000092521 NA NA 17qB1 "Score=0.930431;Name=No.65678,chr17:36544401" NA chr17 36871187 GAAxTTT T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979523 0.979526 0.999997 95 8 5 7.98887 0.072727 0.02 1.40118 51 4 1381 123 60 60 0 0 TT 10.524271 35 0 944 0 KEEP NA H2-M1 NO AA_1 chr17 37700814 37700814 A T exonic Olfr112 synonymous SNV NM_001013575:c.T441A:p.T147T exonic Olfr112 synonymous SNV uc008cnd.2:c.T441A:p.T147T exonic ENSMUSG00000051611 synonymous SNV ENSMUST00000085548:c.T441A:p.T147T 17qB1 NA NA chr17 37700814 CACxGTT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 176 0 0 64.065633 0.413793 0.02 1.284889 34 24 970 697 60 60 0 0 AA 29.776877 99 0 2736 0 KEEP - Olfr112 YES AA_1 chr17 37863419 37863419 T A exonic Olfr120 stopgain SNV NM_146631:c.T476A:p.L159X exonic Olfr120 stopgain SNV uc008cnl.1:c.T476A:p.L159X exonic ENSMUSG00000063994 stopgain SNV ENSMUST00000077498:c.T476A:p.L159X 17qB1 "Score=0.904269;Name=No.65689,chr17:37888786" NA chr17 37863419 ATTxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 290 5 0 119.942145 0.45098 0.02 2.675122 56 46 1588 1285 60 60 0 0 TT 45.409886 151 0 4133 0 KEEP + Olfr120 YES AA_1 chr17 46549144 46549144 A T exonic Zfp318 nonsynonymous SNV NM_207671:c.A5123T:p.Y1708F exonic Zfp318 nonsynonymous SNV uc008css.2:c.A731T:p.Y244F exonic ENSMUSG00000015597 nonsynonymous SNV ENSMUST00000113479:c.A4487T:p.Y1496F 17qC NA NA chr17 46549144 TATxCCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999859 31 0 0 13.999632 0.555556 0.02 -0.078923 4 5 110 143 60 60 0 0 AA 5.412641 18 0 477 0 KEEP + Zfp318 YES AA_1 chr17 46550357 46550357 A T exonic Zfp318 synonymous SNV NM_207671:c.A6336T:p.S2112S exonic Zfp318 synonymous SNV uc008css.2:c.A1944T:p.S648S exonic ENSMUSG00000015597 synonymous SNV ENSMUST00000113479:c.A5700T:p.S1900S 17qC NA NA chr17 46550357 TTCxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 137 2 0 54.348362 0.35 0.02 1.348457 39 21 1122 612 60 60 0 0 AA 15.639869 52 0 1435 0 KEEP + Zfp318 YES AA_1 chr17 57136788 57136788 T A exonic Alkbh7 nonsynonymous SNV NM_025538:c.T2A:p.M1K exonic Alkbh7 nonsynonymous SNV uc008ddn.2:c.T2A:p.M1K exonic ENSMUSG00000002661 nonsynonymous SNV ENSMUST00000002737:c.T2A:p.M1K 17qD NA NA chr17 57136788 AGAxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 208 1 0 165.006076 0.508475 0.02 2.749656 58 60 1579 1719 60 60 0 0 TT 16.538436 55 0 1470 0 KEEP + Alkbh7 YES AA_1 chr17 6132260 6132260 C G intronic Tulp4 NA NA ncRNA_intronic AK163710 NA NA ncRNA_exonic ENSMUSG00000058542 NA NA 17qA1 NA NA chr17 6132260 TGGxCTA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 185 3 14 43.313606 0.180952 0.02 3.043873 86 19 2522 558 57 57 0 0 CC 17.396417 58 0 1563 0 KEEP + Tulp4 NO AA_1 chr17 71594571 71594571 A T exonic Lpin2 nonsynonymous SNV NM_001164885:c.A2545T:p.N849Y exonic Lpin2 nonsynonymous SNV uc008dmd.2:c.A2545T:p.N849Y exonic ENSMUSG00000024052 nonsynonymous SNV ENSMUST00000126681:c.A2545T:p.N849Y 17qE1.3 NA NA chr17 71594571 CCCxACG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 69 0 0 21.310588 0.45 0.02 -0.175338 11 9 316 230 60 60 0 0 AA 12.933644 43 0 1192 0 KEEP + Lpin2 YES AA_1 chr17 85414722 85414722 C G intronic Ppm1b NA NA intronic Ppm1b NA NA intronic ENSMUSG00000061130 NA NA 17qE4 NA NA chr17 85414722 TAAxCCT C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 343 9 0 67.754109 0.262136 0.02 2.881089 76 27 2185 806 60 60 0 0 CC 51.060509 170 0 4587 0 KEEP + Ppm1b NO AA_1 chr18 12624024 12624024 A C exonic Lama3 nonsynonymous SNV NM_010680:c.A2978C:p.K993T exonic Lama3 nonsynonymous SNV uc008ecf.2:c.A2978C:p.K993T exonic ENSMUSG00000024421 nonsynonymous SNV ENSMUST00000092070:c.A2978C:p.K993T 18qA1 NA NA chr18 12624024 GCAxGTA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.290142 0.292001 0.993634 32 0 0 9.920024 0.294118 0.02 -0.14861 12 5 332 120 60 60 0 0 AA 3.608824 12 0 333 0 KEEP + Lama3 NO AA_1 chr18 14005571 14005571 G A exonic Zfp521 nonsynonymous SNV NM_145492:c.C293T:p.S98F exonic Zfp521 nonsynonymous SNV uc008edc.1:c.C293T:p.S98F exonic ENSMUSG00000024420 nonsynonymous SNV ENSMUST00000025288:c.C293T:p.S98F 18qA1 NA NA chr18 14005571 GGGxAAG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 161 1 0 25.738804 0.157895 0.02 1.118404 64 12 1883 344 60 60 0 0 GG 19.84976 66 0 1832 0 KEEP - Zfp521 NO AA_1 chr18 23780476 23780476 A T exonic Dtna synonymous SNV NM_207650:c.A1182T:p.T394T exonic Dtna synonymous SNV uc008ega.1:c.A1182T:p.T394T exonic ENSMUSG00000024302 synonymous SNV ENSMUST00000165089:c.A159T:p.T53T 18qA2 NA NA chr18 23780476 CACxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 127 0 0 13.22553 0.166667 0.02 -0.315333 30 6 811 174 60 60 0 0 AA 21.351893 71 0 1916 0 KEEP + Dtna YES AA_1 chr18 37080548 37080548 T A ncRNA_exonic Gm6756 NA NA intergenic "Vaultrc5(dist=118787),Pcdha1(dist=9391)" NA NA exonic ENSMUSG00000063514 nonsynonymous SNV ENSMUST00000077710:c.T214A:p.F72I 18qB2 "Score=0.958791;Name=No.71522,chr8:78235368" NA chr18 37080548 TCCxTCG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 196 0 0 70.43784 0.42029 0.02 1.090322 40 29 1123 770 60 60 0 0 TT 30.670593 102 0 2820 0 KEEP NA Gm6756 YES AA_1 chr18 37159786 37159786 C T exonic Pcdha9 synonymous SNV NM_138661:c.C2253T:p.R751R exonic Pcdha9 synonymous SNV uc008epe.2:c.C2253T:p.R751R exonic ENSMUSG00000007440 synonymous SNV ENSMUST00000115659:c.C2253T:p.R751R 18qB3 NA NA chr18 37159786 GCGxTGC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139819 0.139832 0.999909 42 0 0 9.891037 0.333333 0.02 -0.105242 8 4 238 113 60 60 0 0 CC 7.219121 24 0 681 0 KEEP + Pcdha9 NO AA_1 chr18 37455118 37455118 T A exonic Pcdhb2 nonsynonymous SNV NM_053127:c.T489A:p.D163E exonic Pcdhb2 nonsynonymous SNV uc008epn.1:c.T489A:p.D163E exonic ENSMUSG00000051599 nonsynonymous SNV ENSMUST00000056522:c.T489A:p.D163E 18qB3 NA NA chr18 37455118 AGAxGTA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999997 49 0 0 17.439169 0.6 0.02 -0.087693 4 6 109 175 60 60 0 0 TT 9.612863 32 0 846 0 KEEP + Pcdhb2 YES AA_1 chr18 37869027 37869027 G T exonic Pcdhga6 nonsynonymous SNV NM_033589:c.G2145T:p.R715S exonic Pcdhga6 nonsynonymous SNV uc008eqs.1:c.G2145T:p.R715S intronic ENSMUSG00000023036 NA NA 18qB3 NA NA chr18 37869027 CAGxCTG G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.934492 0.934492 1 118 0 0 43.250164 0.369565 0.02 -0.4034 29 17 830 483 60 60 0 0 GG 18.017654 60 0 1597 0 KEEP + Pcdhga6 NO AA_1 chr18 39271545 39271545 T A exonic Arhgap26 nonsynonymous SNV NM_175164:c.T588A:p.F196L exonic Arhgap26 nonsynonymous SNV uc008esr.1:c.T588A:p.F196L exonic ENSMUSG00000036452 nonsynonymous SNV ENSMUST00000077134:c.T588A:p.F196L 18qB3 NA NA chr18 39271545 GTTxGTA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 61 2 0 40.623058 0.777778 0.02 -0.156871 4 14 113 382 60 60 0 0 TT 9.323808 31 0 853 0 KEEP + Arhgap26 YES AA_1 chr18 44241926 44241926 T C exonic Spink6 nonsynonymous SNV NM_001013797:c.T188C:p.V63A exonic Spink6 nonsynonymous SNV uc012bcm.1:c.T113C:p.V38A exonic ENSMUSG00000055095 nonsynonymous SNV ENSMUST00000068473:c.T188C:p.V63A 18qB3 NA NA chr18 44241926 AGGxCTT T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 66 0 0 24.916635 0.45 0.02 -0.175391 11 9 305 266 60 60 0 0 TT 11.414576 38 0 983 0 KEEP + Spink6 NO AA_1 chr18 44266096 44266096 T A intronic Spink12 NA NA intronic Spink12 NA NA intronic ENSMUSG00000061144 NA NA 18qB3 NA NA chr18 44266096 CATxGTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139826 0.139832 0.999957 39 0 0 18.496307 0.583333 0.02 -0.105221 5 7 144 187 60 60 0 0 TT 7.818762 26 0 712 0 KEEP + Spink12 YES AA_1 chr18 51462916 51462916 A G exonic Prr16 nonsynonymous SNV NM_001081224:c.A812G:p.H271R exonic Prr16 nonsynonymous SNV uc008ewz.1:c.A812G:p.H271R exonic ENSMUSG00000073565 nonsynonymous SNV ENSMUST00000097576:c.A812G:p.H271R 18qD1 NA NA chr18 51462916 GCCxCAG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 133 2 0 41.632213 0.517241 0.02 -0.271831 14 15 385 432 60 60 0 0 AA 21.501044 75 1 2001 9 KEEP + Prr16 NO AA_1 chr18 55057411 55057411 G A exonic Zfp608 nonsynonymous SNV NM_175751:c.C3110T:p.A1037V exonic Zfp608 nonsynonymous SNV uc008eyf.1:c.C731T:p.A244V exonic ENSMUSG00000052713 nonsynonymous SNV ENSMUST00000064763:c.C3110T:p.A1037V 18qD3 NA NA chr18 55057411 TCCxCAT G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 195 3 0 50.998437 0.30137 0.02 1.046694 51 22 1305 599 60 60 0 0 GG 27.937838 93 0 2286 0 KEEP - Zfp608 NO AA_1 chr18 64500981 64500981 C T exonic Onecut2 synonymous SNV NM_194268:c.C948T:p.P316P exonic Onecut2 synonymous SNV uc008fef.1:c.C948T:p.P316P exonic ENSMUSG00000045991 synonymous SNV ENSMUST00000115145:c.C948T:p.P316P 18qE1 NA NA chr18 64500981 GCCxCCT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 123 0 0 47.332774 0.311475 0.02 1.348426 42 19 1248 547 60 60 0 0 CC 14.431946 48 0 1307 0 KEEP + Onecut2 NO AA_1 chr18 67835467 67835467 T A exonic Ptpn2 nonsynonymous SNV NM_001127177:c.A932T:p.E311V exonic Ptpn2 nonsynonymous SNV uc008fmu.2:c.A932T:p.E311V exonic ENSMUSG00000024539 nonsynonymous SNV ENSMUST00000025420:c.A932T:p.E311V 18qE1 NA NA chr18 67835467 TTCxCAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 262 5 0 169.530669 0.705882 0.02 1.030696 25 60 708 1633 60 60 0 0 TT 40.56855 135 0 3716 0 KEEP - Ptpn2 YES AA_1 chr18 7002373 7002373 A T exonic Mkx nonsynonymous SNV NM_177595:c.T170A:p.L57Q exonic Mkx nonsynonymous SNV uc008dzp.2:c.T170A:p.L57Q exonic ENSMUSG00000061013 nonsynonymous SNV ENSMUST00000079788:c.T170A:p.L57Q 18qA1 NA NA chr18 7002373 CTCxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 135 4 0 105.418451 0.673077 0.02 1.436124 17 35 494 1030 60 60 0 0 AA 17.4453 58 0 1607 0 KEEP - Mkx YES AA_1 chr18 7214654 7214654 A T exonic Armc4 nonsynonymous SNV NM_001081393:c.T2144A:p.L715Q exonic Armc4 nonsynonymous SNV uc008dzq.1:c.T2144A:p.L715Q exonic ENSMUSG00000061802 nonsynonymous SNV ENSMUST00000081275:c.T2144A:p.L715Q 18qA1 NA NA chr18 7214654 AGTxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999997 44 0 0 10.177174 0.363636 0.02 -0.096456 7 4 191 114 60 60 0 0 AA 8.698367 29 0 756 0 KEEP - Armc4 YES AA_1 chr18 73906799 73906799 A G intronic Elac1 NA NA intronic Elac1 NA NA intronic ENSMUSG00000036941 NA NA 18qE2 NA NA chr18 73906799 CCAxGTA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 92 0 0 28.532386 0.275 0.02 -0.359563 29 11 835 335 60 60 0 0 AA 14.136781 47 0 1307 0 KEEP - Elac1 NO AA_1 chr18 74874426 74874426 A T intronic Myo5b NA NA intronic Myo5b NA NA intronic ENSMUSG00000025885 NA NA 18qE2 NA NA chr18 74874426 TGCxATT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.57966 0.58293 0.994391 43 2 0 6.99452 0.181818 0.02 -0.218975 18 4 502 96 60 60 0 0 AA 3.909792 13 0 354 0 KEEP + Myo5b YES AA_1 chr18 7910672 7910672 A G exonic Wac nonsynonymous SNV NM_001282093:c.A634G:p.T212A exonic Wac nonsynonymous SNV uc008eab.2:c.A634G:p.T212A exonic ENSMUSG00000024283 nonsynonymous SNV ENSMUST00000170854:c.A313G:p.T105A 18qA1 NA NA chr18 7910672 CCAxCCG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 184 2 0 12.99397 0.115385 0.02 1.419134 46 6 1244 182 60 60 0 0 AA 27.528513 95 1 2567 9 KEEP + Wac NO AA_1 chr18 84378771 84378771 T A exonic Zfp407 nonsynonymous SNV NM_001033341:c.A6104T:p.Q2035L exonic Zfp407 nonsynonymous SNV uc008fuo.2:c.A6104T:p.Q2035L exonic ENSMUSG00000048410 nonsynonymous SNV ENSMUST00000125763:c.A6104T:p.Q2035L 18qE4 NA NA chr18 84378771 TCTxGGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 161 2 0 65.308666 0.317647 0.02 1.146849 58 27 1620 755 60 60 1 0 TT 17.727522 59 0 1584 0 KEEP - Zfp407 YES AA_1 chr18 85117304 85117304 T A exonic Timm21 synonymous SNV NM_025969:c.A558T:p.L186L exonic 1700034H14Rik synonymous SNV uc008fuy.1:c.A558T:p.L186L exonic ENSMUSG00000024645 synonymous SNV ENSMUST00000025547:c.A558T:p.L186L 18qE4 NA NA chr18 85117304 CTTxAGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 103 0 0 32.024104 0.333333 0.02 -0.341899 26 13 695 366 60 60 0 0 TT 17.137229 57 0 1512 0 KEEP - Timm21 YES AA_1 chr18 89416540 89416540 T A exonic Cd226 synonymous SNV NM_001039149:c.T210A:p.S70S exonic Cd226 synonymous SNV uc008fvn.1:c.T210A:p.S70S exonic ENSMUSG00000034028 synonymous SNV ENSMUST00000097496:c.T210A:p.S70S 18qE4 NA NA chr18 89416540 ATCxCAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 54 0 0 6.805207 0.307692 0.02 -0.113422 9 4 259 84 60 60 0 0 TT 11.413361 38 0 1031 0 KEEP + Cd226 YES AA_1 chr19 10129622 10129622 G C exonic Fads3 synonymous SNV NM_021890:c.G846C:p.V282V exonic Fads3 synonymous SNV uc008goz.1:c.G846C:p.V282V exonic ENSMUSG00000024664 synonymous SNV ENSMUST00000115995:c.G846C:p.V282V 19qA NA NA chr19 10129622 GGTxAAC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 202 0 0 62.315106 0.25 0.02 3.260121 78 26 2312 753 60 60 0 0 GG 19.853135 66 0 1881 0 KEEP + Fads3 NO AA_1 chr19 10787156 10787156 C T exonic Vps37c nonsynonymous SNV NM_181403:c.C491T:p.P164L exonic Vps37c nonsynonymous SNV uc008gqr.1:c.C167T:p.P56L exonic ENSMUSG00000048832 nonsynonymous SNV ENSMUST00000087951:c.C491T:p.P164L 19qA NA NA chr19 10787156 TGCxGGA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909006 0.909069 0.999931 74 0 0 51.246428 0.44186 0.02 -0.377071 24 19 674 550 60 60 0 0 CC 7.212124 24 0 603 0 KEEP + Vps37c NO AA_1 chr19 11826749 11826749 A C exonic Gif nonsynonymous SNV NM_008118:c.A581C:p.N194T exonic Gif nonsynonymous SNV uc008gsw.1:c.A581C:p.N194T exonic ENSMUSG00000024682 nonsynonymous SNV ENSMUST00000025585:c.A581C:p.N194T 19qA NA NA chr19 11826749 AAAxCTA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260929 0.260965 0.999863 39 0 0 6.479759 0.1875 0.02 -0.140305 13 3 365 84 60 60 0 0 AA 5.965019 20 0 514 0 KEEP + Gif NO AA_1 chr19 12749031 12749031 T C exonic Olfr1442 nonsynonymous SNV NM_146697:c.T335C:p.L112P exonic Olfr1442 nonsynonymous SNV uc008guj.2:c.T335C:p.L112P exonic ENSMUSG00000044441 nonsynonymous SNV ENSMUST00000057924:c.T335C:p.L112P 19qA NA NA chr19 12749031 TACxTTT T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 90 2 0 14.553798 0.222222 0.02 -0.245509 21 6 596 179 60 60 0 0 TT 15.640377 52 0 1446 0 KEEP + Olfr1442 NO AA_1 chr19 12994696 12994696 G A exonic Olfr1448 synonymous SNV NM_146701:c.C102T:p.L34L exonic Olfr1448 synonymous SNV uc008gux.1:c.C102T:p.L34L exonic ENSMUSG00000048456 synonymous SNV ENSMUST00000054737:c.C102T:p.L34L 19qA "Score=0.93125;Name=No.72624,chr19:12958160" NA chr19 12994696 GCTxAGA G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 184 7 22 9.633433 0.1 0.02 -0.438526 45 5 1333 143 60 60 0 0 GG 30.968803 103 0 2926 0 KEEP - Olfr1448 NO AA_1 chr19 21352254 21352254 C G intronic Zfand5 NA NA intronic Zfand5 NA NA intronic ENSMUSG00000024750 NA NA 19qB NA NA chr19 21352254 ATGxTTT C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 120 0 0 8.880298 0.181818 0.02 -0.192938 18 4 525 115 60 60 0 0 CC 27.061784 90 0 2547 0 KEEP + Zfand5 NO AA_1 chr19 23306392 23306392 T A exonic Smc5 nonsynonymous SNV NM_001252684:c.A1897T:p.S633C exonic Smc5 nonsynonymous SNV uc008haa.1:c.A1897T:p.S633C exonic ENSMUSG00000024943 nonsynonymous SNV ENSMUST00000036334:c.A1897T:p.S633C 19qB NA NA chr19 23306392 TACxAGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 0.999999 59 0 0 18.277681 0.4375 0.02 -0.140277 9 7 237 197 60 60 0 0 TT 10.525295 35 0 944 0 KEEP - Smc5 YES AA_1 chr19 24551452 24551452 T A exonic Fam122a nonsynonymous SNV NM_026520:c.A395T:p.K132M exonic Fam122a nonsynonymous SNV uc008haq.1:c.A395T:p.K132M exonic ENSMUSG00000074922 nonsynonymous SNV ENSMUST00000099556:c.A395T:p.K132M 19qB NA NA chr19 24551452 CGCxTCG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 143 2 0 71.457787 0.459016 0.02 1.151994 33 28 913 764 60 60 0 0 TT 17.439493 58 0 1577 0 KEEP - Fam122a YES AA_1 chr19 25197009 25197009 T A exonic Dock8 nonsynonymous SNV NM_028785:c.T2005A:p.Y669N exonic Dock8 nonsynonymous SNV uc008hbc.1:c.T907A:p.Y303N exonic ENSMUSG00000052085 nonsynonymous SNV ENSMUST00000025831:c.T2005A:p.Y669N 19qB NA NA chr19 25197009 GGGxACT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 121 0 0 53.540398 0.456522 0.02 -0.403148 25 21 642 573 60 60 0 0 TT 14.727015 49 0 1246 0 KEEP + Dock8 YES AA_1 chr19 33657516 33657516 T A intronic Lipo1 NA NA intronic Lipo1 NA NA intronic ENSMUSG00000024766 NA NA 19qC1 "Score=0.911415;Name=No.72665,chr19:33792274" NA chr19 33657516 GTAxGTA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999999 61 3 2 7.532696 0.272727 0.02 -0.105233 8 3 223 89 60 37 0 0 TT 11.125759 37 0 991 0 KEEP - Lipo1 YES AA_1 chr19 36194238 36194238 T A intronic Ankrd1 NA NA intronic Ankrd1 NA NA intronic ENSMUSG00000024803 NA NA 19qC2 NA NA chr19 36194238 TTTxACA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 77 2 0 11.813597 0.294118 0.02 -0.149064 12 5 334 139 60 70 0 0 TT 15.545494 52 0 1300 0 KEEP - Ankrd1 YES AA_1 chr19 38864848 38864848 A C exonic Noc3l nonsynonymous SNV NM_021315:c.T2201G:p.L734R exonic Noc3l nonsynonymous SNV uc008hjr.2:c.T2201G:p.L734R exonic ENSMUSG00000024999 nonsynonymous SNV ENSMUST00000025963:c.T2201G:p.L734R 19qC3 NA NA chr19 38864848 AAAxGTT A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162456 0.162467 0.999931 42 0 0 6.582286 0.230769 0.02 -0.114007 10 3 294 82 60 60 0 0 AA 7.520036 25 0 702 0 KEEP - Noc3l NO AA_1 chr19 3948741 3948741 A T exonic Unc93b1 synonymous SNV NM_019449:c.A1659T:p.P553P exonic Unc93b1 synonymous SNV uc008fxt.1:c.A720T:p.P240P exonic ENSMUSG00000036908 synonymous SNV ENSMUST00000041089:c.A1596T:p.P532P 19qA NA NA chr19 3948741 GCCxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993573 0.993703 0.999869 99 0 0 68.516261 0.415385 0.02 1.322338 38 27 1053 748 60 60 0 0 AA 6.309607 21 0 551 0 KEEP + Unc93b1 YES AA_1 chr19 4103325 4103325 G C exonic Pitpnm1 synonymous SNV NM_008851:c.G480C:p.R160R exonic Pitpnm1 synonymous SNV uc008fyo.2:c.G480C:p.R160R exonic ENSMUSG00000024851 synonymous SNV ENSMUST00000100022:c.G480C:p.R160R 19qA NA NA chr19 4103325 TCGxCTG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 284 6 0 209.763391 0.595041 0.02 2.912276 49 72 1445 2109 60 60 0 0 GG 34.859559 116 0 3115 0 KEEP + Pitpnm1 NO AA_1 chr19 45022481 45022481 C T exonic Fam178a nonsynonymous SNV NM_001081225:c.C2074T:p.P692S exonic Fam178a nonsynonymous SNV uc012bmi.1:c.C139T:p.P47S exonic ENSMUSG00000036097 nonsynonymous SNV ENSMUST00000087330:c.C2074T:p.P692S 19qC3 NA NA chr19 45022481 TCTxCTC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 102 0 0 8.076252 0.125 0.02 -0.280661 28 4 835 114 60 60 0 0 CC 14.439644 48 0 1372 0 KEEP + Fam178a NO AA_1 chr19 55277692 55277692 A T intronic Gucy2g NA NA intronic Gucy2g NA NA intronic ENSMUSG00000055523 NA NA 19qD2 NA NA chr19 55277692 AACxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851881 0.851984 0.999879 69 1 0 59.369178 0.552632 0.02 -0.333225 17 21 473 607 60 60 0 0 AA 6.61472 22 0 587 0 KEEP - Gucy2g YES AA_1 chr19 6068977 6068977 T A intronic Vps51 NA NA intronic 1110014N23Rik NA NA intronic ENSMUSG00000024797 NA NA 19qA NA NA chr19 6068977 CTCxGCC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 157 7 0 108.711801 0.45977 0.02 1.120426 47 40 1364 1157 60 60 0 0 TT 15.64027 52 0 1436 0 KEEP - Vps51 YES AA_1 chr19 6403384 6403384 T A intronic Rasgrp2 NA NA intronic Rasgrp2 NA NA intronic ENSMUSG00000032946 NA NA 19qA NA NA chr19 6403384 TCTxCCC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 150 2 0 39.381598 0.290323 0.02 0.957101 44 18 1184 470 60 60 0 0 TT 19.247958 64 0 1755 0 KEEP + Rasgrp2 YES AA_1 chr19 7361853 7361853 T A exonic Mark2 stopgain SNV NM_001080388:c.A304T:p.R102X exonic Mark2 stopgain SNV uc008gkq.1:c.A205T:p.R69X exonic ENSMUSG00000024969 stopgain SNV ENSMUST00000025921:c.A205T:p.R69X 19qA NA NA chr19 7361853 TTCxTAC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 93 0 0 45.97963 0.529412 0.02 -0.297729 16 18 442 476 60 60 0 0 TT 12.031133 40 0 1119 0 KEEP - Mark2 YES AA_1 chr1 107710405 107710405 A T intronic Tnfrsf11a NA NA exonic RANK nonsynonymous SNV uc007cgo.1:c.A464T:p.H155L intronic ENSMUSG00000026321 NA NA 1qE2.1 NA NA chr1 107710405 GGCxCCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 110 1 0 69.990869 0.482759 0.02 1.384123 30 28 802 741 60 60 0 0 AA 10.493466 38 1 997 8 KEEP + Tnfrsf11a YES AA_1 chr1 107927471 107927471 C T exonic Zcchc2 stopgain SNV NM_001122675:c.C3094T:p.R1032X exonic Zcchc2 stopgain SNV uc007cgr.2:c.C1903T:p.R635X exonic ENSMUSG00000038866 stopgain SNV ENSMUST00000118196:c.C3094T:p.R1032X 1qE2.1 NA NA chr1 107927471 TACxGAC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 48 0 0 18.444763 0.411765 0.02 -0.148857 10 7 254 201 60 60 0 0 CC 7.807582 26 0 637 0 KEEP + Zcchc2 NO AA_1 chr1 122374484 122374484 T A exonic Marco synonymous SNV NM_010766:c.A1149T:p.A383A exonic Marco synonymous SNV uc007cjl.1:c.A1149T:p.A383A exonic ENSMUSG00000026390 synonymous SNV ENSMUST00000027639:c.A1149T:p.A383A 1qE2.3 NA NA chr1 122374484 ACCxGCC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 243 0 0 52.297594 0.287671 0.02 1.153309 52 21 1512 613 60 60 0 0 TT 40.591169 135 0 3681 0 KEEP - Marco YES AA_1 chr1 133051719 133051719 A C intronic Eif2d NA NA intronic "Eif2d,Lgtn" NA NA intronic ENSMUSG00000026427 NA NA 1qE4 NA NA chr1 133051719 ATAxGTA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999998 54 2 0 27.669491 0.625 0.02 -0.140306 6 10 175 275 60 60 0 0 AA 9.925537 33 0 914 0 KEEP + Eif2d NO AA_1 chr1 133769074 133769074 A G exonic Rab7l1 nonsynonymous SNV NM_144875:c.A532G:p.R178G exonic Rab7l1 nonsynonymous SNV uc007cnw.1:c.A367G:p.R123G exonic ENSMUSG00000026433 nonsynonymous SNV ENSMUST00000112386:c.A532G:p.R178G 1qE4 NA NA chr1 133769074 TCCxGGG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999999 58 0 0 12.595665 0.555556 0.02 -0.078898 4 5 117 129 60 60 0 0 AA 10.468538 35 0 903 0 KEEP + Rab7l1 NO AA_1 chr1 152497093 152497093 A G exonic Hmcn1 synonymous SNV NM_001024720:c.T10008C:p.Y3336Y exonic Hmcn1 synonymous SNV uc007cyj.1:c.T10008C:p.Y3336Y exonic ENSMUSG00000066842 synonymous SNV ENSMUST00000074783:c.T10008C:p.Y3336Y 1qG1 NA NA chr1 152497093 ACCxTAG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 57 0 0 10.969138 0.5 0.02 -0.087644 5 5 142 116 60 60 0 0 AA 12.63068 42 0 1134 0 KEEP + Hmcn1 NO AA_1 chr1 157073362 157073362 T G intergenic "Stx6(dist=22715),Xpr1(dist=49425)" NA NA exonic BC034090 nonsynonymous SNV uc007dbe.1:c.A285C:p.Q95H exonic ENSMUSG00000033722 nonsynonymous SNV ENSMUST00000035914:c.A492C:p.Q164H 1qG3 NA NA chr1 157073362 CACxTGA T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.918171 0.918171 1 129 1 0 20.233622 0.227273 0.02 -0.385804 34 10 972 257 60 60 0 0 TT 21.646175 72 0 1954 0 KEEP - Stx6 NO AA_1 chr1 165894611 165894611 A G exonic BC055324 nonsynonymous SNV NM_201364:c.T1868C:p.L623P exonic BC055324 nonsynonymous SNV uc007dhs.1:c.T1754C:p.L585P exonic ENSMUSG00000041406 nonsynonymous SNV ENSMUST00000111491:c.T1694C:p.L565P 1qH2.2 NA NA chr1 165894611 TCAxGCT A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 229 5 0 17.682155 0.140351 0.02 1.392306 49 8 1406 239 60 60 0 0 AA 38.78139 129 0 3584 0 KEEP - BC055324 NO AA_1 chr1 168029609 168029609 G C exonic Dusp27 nonsynonymous SNV NM_001033344:c.C2564G:p.A855G exonic Dusp27 nonsynonymous SNV uc007dkh.2:c.C2564G:p.A855G exonic ENSMUSG00000026564 nonsynonymous SNV ENSMUST00000085992:c.C2564G:p.A855G 1qH2.3 NA NA chr1 168029609 TTGxCCT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 127 0 0 20.926948 0.219512 0.02 -0.35948 32 9 922 260 60 60 0 0 GG 19.498951 65 0 1758 0 KEEP - Dusp27 NO AA_1 chr1 172087124 172087124 T A exonic Uap1 synonymous SNV NM_133806:c.A765T:p.I255I exonic Uap1 synonymous SNV uc007dlw.1:c.A765T:p.I255I exonic ENSMUSG00000026670 synonymous SNV ENSMUST00000027981:c.A765T:p.I255I 1qH3 NA NA chr1 172087124 CAAxATG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 145 0 0 10.524257 0.147059 0.02 -0.298088 29 5 766 143 60 60 0 0 TT 24.959257 83 0 2218 0 KEEP - Uap1 YES AA_1 chr1 172279515 172279515 A T intronic Nos1ap NA NA intronic Nos1ap NA NA intronic ENSMUSG00000038473 NA NA 1qH3 NA NA chr1 172279515 ATCxGTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999997 48 0 0 17.049654 0.5 0.02 -0.105243 6 6 172 178 60 60 0 0 AA 9.624737 32 0 882 0 KEEP - Nos1ap YES AA_1 chr1 173332076 173332076 A T exonic Arhgap30 synonymous SNV NM_001005508:c.A366T:p.L122L exonic Arhgap30 synonymous SNV uc007doh.2:c.A366T:p.L122L exonic ENSMUSG00000048865 synonymous SNV ENSMUST00000056449:c.A366T:p.L122L 1qH3 NA NA chr1 173332076 GCTxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 103 0 0 24.758147 0.344828 0.02 -0.254293 19 10 537 281 60 60 0 0 AA 15.03738 50 0 1367 0 KEEP + Arhgap30 YES AA_1 chr1 174153994 174153994 A T intronic Atp1a4 NA NA intronic Atp1a4 NA NA intronic ENSMUSG00000007107 NA NA 1qH3 NA NA chr1 174153994 GACxGCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043583 0.043787 0.995343 25 0 0 14.364546 0.714286 0.02 -0.061381 2 5 56 138 60 60 0 0 AA 4.210902 14 0 388 0 KEEP - Atp1a4 YES AA_1 chr1 174181190 174181190 T A intronic Atp1a4 NA NA intronic Atp1a4 NA NA intronic ENSMUSG00000007107 NA NA 1qH3 NA NA chr1 174181190 ATGxATG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099371 0.099721 0.99649 28 0 0 7.37892 0.3 0.02 -0.087684 7 3 189 86 60 60 0 0 TT 4.51085 15 0 402 0 KEEP - Atp1a4 YES AA_1 chr1 174208961 174208961 A T intronic Atp1a2 NA NA intronic "Atp1a2,Igsf8" NA NA intronic "ENSMUSG00000007097,ENSMUSG00000038034" NA NA 1qH3 NA NA chr1 174208961 AGCxACC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 126 4 0 60.435624 0.55 0.02 -0.377051 18 22 502 619 60 60 0 0 AA 18.045836 60 0 1645 0 KEEP - Atp1a2 YES AA_1 chr1 174214692 174214692 A T exonic Atp1a2 nonsynonymous SNV NM_178405:c.T1766A:p.I589N exonic Atp1a2 nonsynonymous SNV uc007dqc.1:c.T1766A:p.I589N exonic ENSMUSG00000007097 nonsynonymous SNV ENSMUST00000085913:c.T1766A:p.I589N 1qH3 NA NA chr1 174214692 TCAxTCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 67 0 0 50.666918 0.642857 0.02 -0.245361 10 18 265 500 60 60 0 0 AA 8.419843 28 0 749 0 KEEP - Atp1a2 YES AA_1 chr1 176299416 176299416 G T exonic Olfr417 nonsynonymous SNV NM_207137:c.G367T:p.A123S exonic Olfr417 nonsynonymous SNV uc007dsz.1:c.G367T:p.A123S exonic ENSMUSG00000066672 nonsynonymous SNV ENSMUST00000085862:c.G367T:p.A123S 1qH3 NA NA chr1 176299416 CTGxCTA G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 169 2 1 39.461828 0.340426 0.02 -0.420182 31 16 863 449 60 60 0 0 GG 28.24834 94 0 2576 0 KEEP + Olfr417 NO AA_1 chr1 187162060 187162060 A T exonic Bpnt1 synonymous SNV NM_011794:c.A69T:p.G23G exonic Bpnt1 synonymous SNV uc007dzc.1:c.A69T:p.G23G exonic ENSMUSG00000026617 synonymous SNV ENSMUST00000027916:c.A69T:p.G23G 1qH5 NA NA chr1 187162060 AGGxACC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999988 42 3 0 16.972383 0.666667 0.02 -0.078921 3 6 85 166 60 60 0 0 AA 8.120183 27 0 739 0 KEEP + Bpnt1 YES AA_1 chr1 189970239 189970239 A T exonic Esrrg stopgain SNV NM_011935:c.A637T:p.R213X exonic Esrrg stopgain SNV uc007eab.1:c.A637T:p.R213X exonic ENSMUSG00000026610 stopgain SNV ENSMUST00000027906:c.A637T:p.R213X 1qH6 NA NA chr1 189970239 CGCxGAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 68 2 0 22.315433 0.409091 0.02 -0.192734 13 9 371 245 60 60 0 0 AA 9.323593 31 0 858 0 KEEP + Esrrg YES AA_1 chr1 193445323 193445323 A G exonic Ints7 nonsynonymous SNV NM_178632:c.A2881G:p.S961G exonic Ints7 nonsynonymous SNV uc007ecr.1:c.A2509G:p.S837G exonic ENSMUSG00000037461 nonsynonymous SNV ENSMUST00000045450:c.A2881G:p.S961G 1qH6 NA NA chr1 193445323 CGCxGTG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.6681 0.668523 0.999366 55 0 0 59.877173 0.724138 0.02 -0.254202 8 21 238 573 60 60 0 0 AA 5.113468 17 0 475 0 KEEP + Ints7 NO AA_1 chr1 22603489 22603489 T A intronic Rims1 NA NA intronic Rims1 NA NA intronic ENSMUSG00000041670 NA NA 1qA5 NA NA chr1 22603489 TCCxAAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 109 0 0 27.048173 0.5 0.02 -0.192929 10 10 288 283 60 60 0 0 TT 21.05402 70 0 1936 0 KEEP - Rims1 YES AA_1 chr1 34559057 34559057 C A intronic Prss39 NA NA intronic Prss39 NA NA intronic ENSMUSG00000026125 NA NA 1qB NA NA chr1 34559057 GGCxCTG C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 57 0 0 30.318864 0.428571 0.02 -0.254289 16 12 461 329 60 60 0 0 CC 7.518582 25 0 696 0 KEEP + Prss39 NO AA_1 chr1 34559761 34559761 T A exonic Prss39 nonsynonymous SNV NM_009355:c.T1073A:p.L358H exonic Prss39 nonsynonymous SNV uc007aov.1:c.T1073A:p.L358H exonic ENSMUSG00000026125 nonsynonymous SNV ENSMUST00000027299:c.T1073A:p.L358H 1qB NA NA chr1 34559761 TCCxCCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 254 0 0 126.636304 0.6125 0.02 0.986428 31 49 856 1265 60 60 0 0 TT 39.343002 131 0 3581 0 KEEP + Prss39 YES AA_1 chr1 36589025 36589025 G A exonic Ankrd23 nonsynonymous SNV NM_153502:c.C559T:p.R187C exonic Ankrd23 nonsynonymous SNV uc007aql.1:c.C559T:p.R187C exonic ENSMUSG00000067653 nonsynonymous SNV ENSMUST00000045120:c.C217T:p.R73C 1qB NA NA chr1 36589025 CGCxGCA G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 296 8 0 13.996399 0.055172 0.02 2.495739 137 8 3846 236 60 60 0 0 GG 30.287603 101 0 2542 0 KEEP - Ankrd23 NO AA_1 chr1 40783314 40783314 C T intronic Slc9a2 NA NA UTR3 Slc9a2 NA NA intronic ENSMUSG00000026062 NA NA 1qB NA NA chr1 40783314 GCTxACC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 99 0 0 66.135533 0.727273 0.02 -0.289254 9 24 256 631 60 60 0 0 CC 15.042125 50 0 1446 0 KEEP + Slc9a2 NO AA_1 chr1 52547535 52547535 T A exonic Nab1 stopgain SNV NM_008667:c.A46T:p.R16X exonic Nab1 stopgain SNV uc007ayh.2:c.A46T:p.R16X exonic ENSMUSG00000002881 stopgain SNV ENSMUST00000170269:c.A46T:p.R16X 1qC1.1 NA NA chr1 52547535 TTCxATA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 99 0 0 35.718799 0.368421 0.02 -0.333218 24 14 663 399 60 60 0 0 TT 13.832335 46 0 1238 0 KEEP - Nab1 YES AA_1 chr1 52765584 52765584 T A exonic Mfsd6 nonsynonymous SNV NM_133829:c.A965T:p.K322I exonic Mfsd6 nonsynonymous SNV uc007ayl.2:c.A965T:p.K322I exonic ENSMUSG00000041439 nonsynonymous SNV ENSMUST00000087701:c.A965T:p.K322I 1qC1.1 NA NA chr1 52765584 TGTxTTC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98954 0.989542 0.999998 109 2 0 95.95514 0.616667 0.02 1.062838 23 37 635 957 60 60 0 0 TT 9.921711 33 0 894 0 KEEP - Mfsd6 YES AA_1 chr1 58233292 58233292 A G intronic Aox3 NA NA intronic Aox3 NA NA intronic ENSMUSG00000064294 NA NA 1qC1.3 NA NA chr1 58233292 CTGxGAA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162456 0.162467 0.999931 45 3 0 13.224591 0.384615 0.02 -0.113976 8 5 220 146 60 60 0 0 AA 7.520194 25 0 705 0 KEEP + Aox3 NO AA_1 chr1 68374638 68374638 T A intronic Erbb4 NA NA intronic Erbb4 NA NA intronic ENSMUSG00000062209 NA NA 1qC3 NA NA chr1 68374638 TACxTAC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.999859 28 0 0 10.799143 0.5 0.02 -0.07016 4 4 118 113 60 60 0 0 TT 5.414642 18 0 510 0 KEEP - Erbb4 YES AA_1 chr1 78356682 78356682 T A exonic Sgpp2 nonsynonymous SNV NM_001004173:c.T121A:p.Y41N exonic Sgpp2 nonsynonymous SNV uc007bqe.1:c.T121A:p.Y41N exonic ENSMUSG00000032908 nonsynonymous SNV ENSMUST00000036172:c.T121A:p.Y41N 1qC4 NA NA chr1 78356682 TTCxACT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139813 0.139832 0.999863 34 0 0 13.145396 0.416667 0.02 -0.105237 7 5 201 143 60 60 0 0 TT 6.01509 20 0 552 0 KEEP + Sgpp2 YES AA_1 chr1 83260293 83260293 A T intronic Sphkap NA NA intronic Sphkap NA NA intronic ENSMUSG00000026163 NA NA 1qC5 NA NA chr1 83260293 CTTxCTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 80 0 0 11.55385 0.208333 0.02 -0.210446 19 5 518 145 60 60 0 0 AA 12.000442 43 1 1132 8 KEEP - Sphkap YES AA_1 chr1 87381397 87381397 A T intergenic "NONE(dist=NONE),Sp110(dist=92078)" NA NA intergenic "BC108341(dist=2042246),Csprs(dist=51447)" NA NA ncRNA_exonic ENSMUSG00000090189 NA NA 1qC5 "Score=0.985694;Name=No.293,chr1:85009334" NA chr1 87381397 CAGxGTA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 337 7 116 27.362013 0.24 0.02 -0.438467 38 12 1102 336 37 31 0 0 AA 64.030317 213 0 5948 0 KEEP NA NONE YES AA_1 chr1 88997798 88997798 A T intronic Alpi NA NA intronic Alpi NA NA intronic ENSMUSG00000079440 NA NA 1qD NA NA chr1 88997798 AGTxCAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 281 5 0 134.686895 0.401515 0.02 2.421697 79 53 2089 1480 60 60 0 0 AA 33.038399 110 0 2883 0 KEEP - Alpi YES AA_1 chr1 89952672 89952672 A T exonic Ugt1a10 stopgain SNV NM_201641:c.A616T:p.R206X exonic Ugt1a10 stopgain SNV uc007bya.1:c.A616T:p.R206X exonic ENSMUSG00000090165 stopgain SNV ENSMUST00000113142:c.A616T:p.R206X 1qD "Score=0.961098;Name=No.335,chr1:89920788" NA chr1 89952672 GAGxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 296 4 9 55.889265 0.410714 0.02 1.152333 33 23 927 614 60 60 0 0 AA 59.802083 199 0 5467 0 KEEP + Ugt1a10 YES AA_1 chr1 90154312 90154312 T A exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4465A:p.F1489I exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4489A:p.F1497I exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4465A:p.F1489I 1qD NA NA chr1 90154312 GCCxTTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 92 0 0 7.66005 0.111111 0.02 -0.315716 32 4 929 112 60 60 0 0 TT 13.154733 44 0 1188 0 KEEP + Mroh2a YES AA_1 chr1 94773127 94773127 A T exonic Ankmy1 nonsynonymous SNV NM_172850:c.T2710A:p.Y904N exonic Ankmy1 nonsynonymous SNV uc007cbt.1:c.T2710A:p.Y904N exonic ENSMUSG00000034212 nonsynonymous SNV ENSMUST00000045770:c.T2422A:p.Y808N 1qD NA NA chr1 94773127 GGTxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 115 0 0 97.828075 0.553846 0.02 1.215272 29 36 780 1001 60 60 0 0 AA 11.39241 38 0 989 0 KEEP - Ankmy1 YES AA_1 chr1_random 811630 811630 T A intergenic "Hhipl2(dist=401229),NONE(dist=NONE)" NA NA intergenic "AK163333(dist=35029),Gm16026(dist=45821)" NA NA exonic ENSMUSG00000079452 synonymous SNV ENSMUST00000160431:c.T759A:p.A253A NA "Score=0.97987;Name=No.74917,chr1_random:1060724" NA chr1_random 811630 TGCxCTA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1214 14 322 29.606815 0.079812 0.02 4.789091 196 17 5645 472 57 46 0 0 TT 227.030936 755 0 21026 0 KEEP NA Hhipl2 YES AA_1 chr2 10162697 10162697 A T exonic Itih5 stopgain SNV NM_172471:c.A1969T:p.K657X exonic Itih5 stopgain SNV uc008ihr.1:c.A1969T:p.K657X exonic ENSMUSG00000025780 stopgain SNV ENSMUST00000026886:c.A1969T:p.K657X 2qA1 NA NA chr2 10162697 GGCxAGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 105 0 0 73.032489 0.55102 0.02 -0.429677 22 27 628 748 60 60 0 0 AA 11.729392 39 0 1071 0 KEEP + Itih5 YES AA_1 chr2 10439394 10439394 A T intronic Sfmbt2 NA NA intronic Sfmbt2 NA NA intronic ENSMUSG00000061186 NA NA 2qA1 NA NA chr2 10439394 AGTxCTG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 74 1 0 9.069819 0.190476 0.02 -0.192907 17 4 461 116 60 60 0 0 AA 12.325024 41 0 1085 0 KEEP + Sfmbt2 YES AA_1 chr2 105672339 105672339 T A exonic Elp4 nonsynonymous SNV NM_023876:c.A596T:p.H199L exonic Elp4 nonsynonymous SNV uc008lld.1:c.A596T:p.H199L exonic ENSMUSG00000027167 nonsynonymous SNV ENSMUST00000028588:c.A242T:p.H81L 2qE3 NA NA chr2 105672339 CCAxGCC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053885 0.054137 0.995343 24 0 0 11.500659 0.5 0.02 -0.070147 4 4 107 120 60 60 0 0 TT 3.336125 13 1 349 5 KEEP - Elp4 YES AA_1 chr2 110472865 110472865 T A intronic Slc5a12 NA NA intronic Slc5a12 NA NA intronic ENSMUSG00000041644 NA NA 2qE3 NA NA chr2 110472865 TTCxTGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 73 0 0 25.106774 0.6 0.02 -0.131537 6 9 171 252 60 60 0 0 TT 14.13775 47 0 1321 0 KEEP + Slc5a12 YES AA_1 chr2 111156159 111156159 A T exonic Olfr1280 synonymous SNV NM_146908:c.A522T:p.I174I exonic Olfr1280 synonymous SNV uc008lnh.1:c.A522T:p.I174I exonic ENSMUSG00000068645 synonymous SNV ENSMUST00000090328:c.A522T:p.I174I 2qE3 NA NA chr2 111156159 GATxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 464 2 11 68.537024 0.333333 0.02 0.958561 56 28 1639 784 60 60 0 0 AA 89.596349 298 0 8197 0 KEEP + Olfr1280 YES AA_1 chr2 113972666 113972666 T A exonic Aqr synonymous SNV NM_009702:c.A1077T:p.V359V exonic "Aqr,mKIAA0560" synonymous SNV uc008lqd.2:c.A1077T:p.V359V exonic ENSMUSG00000040383 synonymous SNV ENSMUST00000043160:c.A1077T:p.V359V 2qE4 NA NA chr2 113972666 ATCxACT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 74 0 0 37.073842 0.65 0.02 -0.175388 7 13 203 365 60 60 0 0 TT 12.631845 42 0 1153 0 KEEP - Aqr YES AA_1 chr2 11510698 11510698 A C exonic Rbm17 nonsynonymous SNV NM_152824:c.T725G:p.I242S exonic Rbm17 nonsynonymous SNV uc008iio.1:c.T725G:p.I242S exonic ENSMUSG00000037197 nonsynonymous SNV ENSMUST00000040314:c.T725G:p.I242S 2qA1 NA NA chr2 11510698 ATAxTCT A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 57 0 3 25.423662 0.434783 0.02 -0.201536 13 10 345 275 60 60 0 0 AA 6.616384 22 0 597 0 KEEP - Rbm17 NO AA_1 chr2 116706507 116706507 T A intronic Tmco5 NA NA intronic Tmco5 NA NA intronic ENSMUSG00000027355 NA NA 2qE5 NA NA chr2 116706507 CCTxATG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.999863 33 0 0 8.328445 0.5 0.02 -0.070081 3 3 70 87 60 60 0 0 TT 6.015013 20 0 545 0 KEEP + Tmco5 YES AA_1 chr2 120011115 120011115 T A intronic Pla2g4e NA NA intronic Pla2g4e NA NA intronic ENSMUSG00000050211 NA NA 2qE5 NA NA chr2 120011115 CCCxGGG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 39 0 0 44.135767 0.777778 0.02 -0.157869 4 14 114 416 60 60 0 0 TT 4.811995 16 0 436 0 KEEP - Pla2g4e YES AA_1 chr2 121276455 121276455 A T splicing Serf2(NM_011354:exon3:c.117-2A>T) NA NA splicing Serf2(uc008lzd.1:exon3:c.117-2A>T) NA NA exonic;splicing ENSMUSG00000074884;ENSMUSG00000074884(ENSMUST00000139253:exon3:c.117-2A>T) synonymous SNV ENSMUST00000099475:c.A138T:p.P46P 2qE5 NA NA chr2 121276455 CCCxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 136 2 0 43.898606 0.404762 0.02 -0.377078 25 17 713 481 60 60 0 0 AA 22.243433 74 0 2056 0 KEEP + Serf2 YES AA_1 chr2 124921714 124921714 T A exonic Myef2 synonymous SNV NM_001162418:c.A1371T:p.S457S exonic Myef2 synonymous SNV uc008mbz.2:c.A1371T:p.S457S exonic ENSMUSG00000027201 synonymous SNV ENSMUST00000147105:c.A1371T:p.S457S 2qF1 NA NA chr2 124921714 ACCxGAT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 147 0 13 97.788106 0.6875 0.02 -0.438474 15 33 428 950 60 60 0 0 TT 21.621011 72 0 1943 0 KEEP - Myef2 YES AA_1 chr2 130081867 130081867 T A exonic Tmc2 nonsynonymous SNV NM_138655:c.T2165A:p.I722N exonic Tmc2 nonsynonymous SNV uc008mik.1:c.T2165A:p.I722N exonic ENSMUSG00000060332 nonsynonymous SNV ENSMUST00000166774:c.T2165A:p.I722N 2qF1 NA NA chr2 130081867 CCAxCGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 112 0 0 24.38131 0.30303 0.02 -0.289365 23 10 636 284 60 60 0 0 TT 18.64693 62 0 1698 0 KEEP + Tmc2 YES AA_1 chr2 130081875 130081875 G C exonic Tmc2 nonsynonymous SNV NM_138655:c.G2173C:p.D725H exonic Tmc2 nonsynonymous SNV uc008mik.1:c.G2173C:p.D725H exonic ENSMUSG00000060332 nonsynonymous SNV ENSMUST00000166774:c.G2173C:p.D725H 2qF1 NA NA chr2 130081875 AACxATT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 107 0 0 26.341626 0.3125 0.02 -0.280586 22 10 601 302 60 60 0 0 GG 17.732477 59 0 1534 0 KEEP + Tmc2 NO AA_1 chr2 130216618 130216618 T A UTR3 Cpxm1 NA NA UTR3 Cpxm1 NA NA UTR3 ENSMUSG00000027408 NA NA 2qF1 NA NA chr2 130216618 ATGxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 124 1 0 64.385452 0.615385 0.02 -0.341311 15 24 413 643 60 60 0 0 TT 19.534441 65 0 1716 0 KEEP - Cpxm1 YES AA_1 chr2 132741749 132741749 T C exonic Fermt1 nonsynonymous SNV NM_198029:c.A1481G:p.K494R exonic Fermt1 nonsynonymous SNV uc008mno.1:c.A1481G:p.K494R exonic ENSMUSG00000027356 nonsynonymous SNV ENSMUST00000038280:c.A1481G:p.K494R 2qF2 NA NA chr2 132741749 ATCxTGA T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 83 1 0 23.330224 0.333333 0.02 -0.236803 18 9 532 265 60 60 0 0 TT 13.836168 46 0 1281 0 KEEP - Fermt1 NO AA_1 chr2 135173085 135173085 T A intronic Plcb1 NA NA intronic Plcb1 NA NA ncRNA_intronic ENSMUSG00000085631 NA NA 2qF3 NA NA chr2 135173085 CAGxGTC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196298 0.196312 0.999931 43 0 0 7.653141 0.285714 0.02 -0.121782 10 4 276 94 60 60 0 0 TT 7.516233 25 0 665 0 KEEP + Plcb1 YES AA_1 chr2 139736342 139736342 T A exonic Tasp1 nonsynonymous SNV NM_001159640:c.A912T:p.R304S exonic Tasp1 nonsynonymous SNV uc008mpg.2:c.A912T:p.R304S exonic ENSMUSG00000039033 nonsynonymous SNV ENSMUST00000046656:c.A912T:p.R304S 2qF3 NA NA chr2 139736342 TTCxCTA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 79 0 0 26.459342 0.526316 0.02 -0.166613 9 10 262 274 60 60 0 0 TT 14.438431 48 0 1348 0 KEEP - Tasp1 YES AA_1 chr2 143793256 143793256 C A exonic Rrbp1 nonsynonymous SNV NM_024281:c.G2716T:p.A906S exonic Rrbp1 nonsynonymous SNV uc008mqj.1:c.G2716T:p.A906S exonic ENSMUSG00000027422 nonsynonymous SNV ENSMUST00000016072:c.G2716T:p.A906S 2qG1 NA NA chr2 143793256 AGGxCTC C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 109 0 0 81.232143 0.638298 0.02 -0.411099 17 30 477 803 60 60 0 0 CC 15.038313 50 0 1382 0 KEEP - Rrbp1 NO AA_1 chr2 151331087 151331087 A T splicing Nsfl1c(NM_198326:exon6:c.544-2A>T) NA NA splicing Nsfl1c(uc008ndw.1:exon7:c.538-2A>T) NA NA splicing "ENSMUSG00000027455(ENSMUST00000089140:exon7:c.544-2A>T,ENSMUST00000028949:exon6:c.538-2A>T,ENSMUST00000103160:exon5:c.445-2A>T)" NA NA 2qG3 NA NA chr2 151331087 CACxGGT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 107 1 0 50.266798 0.586207 0.02 -0.254342 12 17 344 507 60 60 0 0 AA 19.537193 65 0 1763 0 KEEP + Nsfl1c YES AA_1 chr2 153355287 153355287 C G exonic 8430427H17Rik nonsynonymous SNV NM_001134300:c.G212C:p.G71A exonic 8430427H17Rik nonsynonymous SNV uc008nhv.2:c.G212C:p.G71A exonic ENSMUSG00000061411 nonsynonymous SNV ENSMUST00000035346:c.G212C:p.G71A 2qH1 NA NA chr2 153355287 TCGxCCG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 112 2 0 21.798493 0.36 0.02 -0.227899 16 9 434 246 60 60 0 0 CC 18.337067 61 0 1635 0 KEEP - 8430427H17Rik NO AA_1 chr2 163683960 163683960 T G exonic Kcnk15 nonsynonymous SNV NM_001030292:c.T382G:p.F128V exonic Kcnk15 nonsynonymous SNV uc008ntn.1:c.T382G:p.F128V exonic ENSMUSG00000035238 nonsynonymous SNV ENSMUST00000044798:c.T382G:p.F128V 2qH3 NA NA chr2 163683960 GTGxTCT T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 108 0 0 28.583617 0.245283 0.02 1.526541 40 13 1125 352 60 60 0 0 TT 11.729245 39 0 1063 0 KEEP + Kcnk15 NO AA_1 chr2 179924084 179924084 A T exonic Lama5 nonsynonymous SNV NM_001081171:c.T5486A:p.V1829E exonic Lama5 nonsynonymous SNV uc008oip.1:c.T5486A:p.V1829E exonic ENSMUSG00000015647 nonsynonymous SNV ENSMUST00000015791:c.T5486A:p.V1829E 2qH4 NA NA chr2 179924084 TCCxCAT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.795151 0.800245 0.993634 48 0 0 25.080945 0.30303 0.02 -0.306933 23 10 648 291 60 60 0 0 AA 3.608932 12 0 325 0 KEEP - Lama5 YES AA_1 chr2 180706763 180706763 A G exonic Arfgap1 nonsynonymous SNV NM_001177710:c.A86G:p.K29R exonic Arfgap1 nonsynonymous SNV uc008okk.2:c.A86G:p.K29R exonic ENSMUSG00000027575 nonsynonymous SNV ENSMUST00000108859:c.A245G:p.K82R 2qH4 NA NA chr2 180706763 CTAxGTT A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552881 0.552887 0.999988 69 2 0 58.013822 0.791667 0.02 -0.2104 5 19 147 543 60 60 0 0 AA 8.121474 27 0 755 0 KEEP + Arfgap1 NO AA_1 chr2 181100524 181100524 A C exonic Zgpat nonsynonymous SNV NM_001048148:c.A148C:p.T50P exonic Zgpat nonsynonymous SNV uc008omc.1:c.A148C:p.T50P exonic ENSMUSG00000027582 nonsynonymous SNV ENSMUST00000108807:c.A148C:p.T50P 2qH4 NA NA chr2 181100524 CTCxCCG A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 119 0 0 30.521637 0.22807 0.02 1.384013 44 13 1178 376 60 60 0 0 AA 15.021003 50 0 1330 0 KEEP + Zgpat NO AA_1 chr2 181325629 181325629 T C exonic Znf512b synonymous SNV NM_001164597:c.A60G:p.G20G exonic Znf512b synonymous SNV uc012cms.1:c.A60G:p.G20G exonic ENSMUSG00000000823 synonymous SNV ENSMUST00000108789:c.A60G:p.G20G 2qH4 NA NA chr2 181325629 AGGxCCA T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 69 0 0 20.795251 0.333333 0.02 -0.218737 16 8 425 236 60 60 0 0 TT 10.487143 35 0 908 0 KEEP - Znf512b NO AA_1 chr2 181418297 181418297 T G exonic Tcea2 nonsynonymous SNV NM_009326:c.T177G:p.S59R exonic Tcea2 nonsynonymous SNV uc008onb.1:c.T177G:p.S59R exonic ENSMUSG00000059540 nonsynonymous SNV ENSMUST00000103042:c.T177G:p.S59R 2qH4 NA NA chr2 181418297 GAGxTCA T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 140 4 0 43.572348 0.3 0.02 1.438723 42 18 1171 509 60 60 0 0 TT 15.639804 52 0 1434 0 KEEP + Tcea2 NO AA_1 chr2 181550242 181550242 G T exonic Myt1 nonsynonymous SNV NM_001171680:c.G2248T:p.G750C exonic Myt1 nonsynonymous SNV uc012cmx.1:c.G1864T:p.G622C exonic ENSMUSG00000010505 nonsynonymous SNV ENSMUST00000135744:c.G196T:p.G66C 2qH4 NA NA chr2 181550242 TCAxGCT G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457694 0.457757 0.999863 52 2 0 17.040154 0.333333 0.02 -0.192692 14 7 405 195 60 60 0 0 GG 6.016655 20 0 574 0 KEEP + Myt1 NO AA_1 chr2 21321059 21321059 A T intronic Gpr158 NA NA intronic Gpr158 NA NA intronic ENSMUSG00000045967 NA NA 2qA3 NA NA chr2 21321059 AAGxATA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139815 0.139832 0.999879 38 0 0 15.548233 0.5 0.02 -0.105223 6 6 169 163 60 60 0 0 AA 6.617454 22 0 616 0 KEEP + Gpr158 YES AA_1 chr2 25119407 25119407 C A exonic Tprn synonymous SNV NM_175286:c.C1200A:p.A400A exonic Tprn synonymous SNV uc008ira.2:c.C1200A:p.A400A exonic ENSMUSG00000048707 synonymous SNV ENSMUST00000051033:c.C426A:p.A142A 2qA3 NA NA chr2 25119407 GGCxTCT C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 250 0 0 191.868316 0.461078 0.02 3.570408 90 77 2609 2052 60 60 0 0 CC 17.140887 57 0 1610 0 KEEP + Tprn NO AA_1 chr2 26239104 26239104 G C UTR3 Sdccag3 NA NA UTR3 Sdccag3 NA NA ncRNA_UTR3 ENSMUSG00000026927 NA NA 2qA3 NA NA chr2 26239104 GTGxCAG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 187 2 0 79.80847 0.483333 0.02 1.439189 31 29 871 840 60 60 0 0 GG 29.159587 97 0 2677 0 KEEP - Sdccag3 NO AA_1 chr2 27604183 27604183 A T exonic Rxra nonsynonymous SNV NM_011305:c.A677T:p.E226V exonic Rxra nonsynonymous SNV uc008ixs.1:c.A677T:p.E226V exonic ENSMUSG00000015846 nonsynonymous SNV ENSMUST00000077257:c.A677T:p.E226V 2qA3 NA NA chr2 27604183 TGGxGTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 174 0 0 38.472025 0.22619 0.02 0.958853 65 19 1839 489 60 60 0 0 AA 18.343635 61 0 1652 0 KEEP + Rxra YES AA_1 chr2 29364904 29364904 T G intronic Med27 NA NA intronic Med27 NA NA intronic ENSMUSG00000026799 NA NA 2qB NA NA chr2 29364904 GAGxTGA T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999998 64 0 0 16.666174 0.375 0.02 -0.140317 10 6 279 184 60 60 0 0 TT 10.223452 34 0 925 0 KEEP + Med27 NO AA_1 chr2 29866595 29866595 A T exonic Sptan1 nonsynonymous SNV NM_001076554:c.A4252T:p.R1418W exonic Spna2 nonsynonymous SNV uc008jat.1:c.A1057T:p.R353W exonic ENSMUSG00000057738 nonsynonymous SNV ENSMUST00000046257:c.A4252T:p.R1418W 2qB NA NA chr2 29866595 CGCxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 138 0 0 107.842376 0.481481 0.02 1.181807 42 39 1213 1136 60 60 0 0 AA 12.632284 42 0 1155 0 KEEP + Sptan1 YES AA_1 chr2 29866668 29866668 G C intronic Sptan1 NA NA intronic Spna2 NA NA intronic ENSMUSG00000057738 NA NA 2qB NA NA chr2 29866668 GTGxCCA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999997 93 0 0 35.799871 0.277778 0.02 1.51763 39 15 1137 425 60 60 0 0 GG 9.32417 31 0 859 0 KEEP + Sptan1 NO AA_1 chr2 30735141 30735141 A T exonic Prrx2 nonsynonymous SNV NM_009116:c.A559T:p.T187S exonic Prrx2 nonsynonymous SNV uc008jcy.2:c.A559T:p.T187S exonic ENSMUSG00000039476 nonsynonymous SNV ENSMUST00000041659:c.A559T:p.T187S 2qB NA NA chr2 30735141 CCTxCCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 184 3 0 86.40715 0.346535 0.02 2.69326 66 35 1762 980 60 60 0 1 AA 13.225457 44 0 1158 0 KEEP + Prrx2 YES AA_1 chr2 31280067 31280067 A T intergenic "Ncs1(dist=129076),Ass1(dist=45723)" NA NA intergenic "Ncs1(dist=129076),Hmcn2(dist=13515)" NA NA intronic ENSMUSG00000055632 NA NA 2qB NA NA chr2 31280067 CGCxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997023 0.997163 0.999859 101 0 0 114.020812 0.585714 0.02 1.269573 29 41 847 1151 60 60 0 0 AA 5.41396 18 0 499 0 KEEP NA Ncs1 YES AA_1 chr2 31656303 31656303 A T exonic Abl1 synonymous SNV NM_001112703:c.A2313T:p.G771G exonic Abl1 synonymous SNV uc008jeb.2:c.A2313T:p.G771G exonic ENSMUSG00000026842 synonymous SNV ENSMUST00000028190:c.A2256T:p.G752G 2qB NA NA chr2 31656303 TGGxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 159 0 0 92.180138 0.393617 0.02 0.862381 57 37 1621 1019 60 60 0 0 AA 14.135259 47 0 1305 0 KEEP + Abl1 YES AA_1 chr2 32049366 32049366 A T exonic Prrc2b nonsynonymous SNV NM_001159634:c.A697T:p.R233W exonic Prrc2b nonsynonymous SNV uc008jeo.2:c.A529T:p.R177W exonic ENSMUSG00000039262 nonsynonymous SNV ENSMUST00000069817:c.A697T:p.R233W 2qB NA NA chr2 32049366 AGCxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918051 0.918171 0.999869 67 1 0 48.39064 0.418605 0.02 -0.385886 25 18 723 525 60 60 0 0 AA 6.316449 21 0 583 0 KEEP + Prrc2b YES AA_1 chr2 32607080 32607080 A T exonic Sh2d3c nonsynonymous SNV NM_001252547:c.A1489T:p.T497S exonic Sh2d3c nonsynonymous SNV uc008jgr.1:c.A1489T:p.T497S exonic ENSMUSG00000059013 nonsynonymous SNV ENSMUST00000113242:c.A1489T:p.T497S 2qB NA NA chr2 32607080 TGCxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 75 2 0 43.968031 0.410256 0.02 -0.342026 23 16 646 478 60 60 0 0 AA 8.720982 29 0 784 0 KEEP + Sh2d3c YES AA_1 chr2 32837422 32837422 G C intronic Slc2a8 NA NA ncRNA_intronic GLUTX1 NA NA intronic ENSMUSG00000026791 NA NA 2qB NA NA chr2 32837422 GGGxCGT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 211 0 0 39.140435 0.178218 0.02 3.08765 83 18 2492 511 60 60 0 0 GG 21.59057 72 0 1944 0 KEEP - Slc2a8 NO AA_1 chr2 35137932 35137932 A T UTR5 Gsn NA NA intronic Gsn NA NA UTR5 ENSMUSG00000026879 NA NA 2qB NA NA chr2 35137932 TAAxGGT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995618 0.995687 0.999931 110 1 0 105.499419 0.573529 0.02 1.101482 29 39 755 1069 60 60 0 0 AA 7.518215 25 0 681 0 KEEP + Gsn YES AA_1 chr2 35231553 35231553 A T exonic 4930402F06Rik synonymous SNV NM_001272040:c.T531A:p.A177A exonic 4930402F06Rik synonymous SNV uc008jkj.1:c.T531A:p.A177A exonic ENSMUSG00000079421 synonymous SNV ENSMUST00000113009:c.T531A:p.A177A 2qB NA NA chr2 35231553 CTGxGCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 195 0 0 120.112598 0.641791 0.02 1.090163 24 43 699 1186 60 60 0 0 AA 29.761223 99 0 2738 0 KEEP - 4930402F06Rik YES AA_1 chr2 36725689 36725689 T G exonic Olfr352 nonsynonymous SNV NM_146940:c.T602G:p.V201G exonic Olfr352 nonsynonymous SNV uc008jmb.1:c.T602G:p.V201G exonic ENSMUSG00000053146 nonsynonymous SNV ENSMUST00000065416:c.T602G:p.V201G 2qB NA NA chr2 36725689 TGGxTAT T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 95 0 0 30.667321 0.342857 0.02 -0.306368 23 12 620 347 60 60 0 0 TT 15.339594 51 0 1412 0 KEEP + Olfr352 NO AA_1 chr2 37649278 37649278 C G exonic Crb2 nonsynonymous SNV NM_001163566:c.C3271G:p.R1091G exonic Crb2 nonsynonymous SNV uc008jnf.2:c.C3271G:p.R1091G exonic ENSMUSG00000035403 nonsynonymous SNV ENSMUST00000050372:c.C3271G:p.R1091G 2qB NA NA chr2 37649278 ATCxGCG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.937356 0.941741 0.995343 70 0 0 96.131678 0.717391 0.02 -0.412092 13 33 376 923 60 60 0 0 CC 4.172719 14 0 335 0 KEEP + Crb2 NO AA_1 chr2 37650125 37650125 A T exonic Crb2 nonsynonymous SNV NM_001163566:c.A3456T:p.L1152F exonic Crb2 nonsynonymous SNV uc008jnf.2:c.A3456T:p.L1152F exonic ENSMUSG00000035403 nonsynonymous SNV ENSMUST00000050372:c.A3456T:p.L1152F 2qB NA NA chr2 37650125 CTTxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 186 4 0 79.431472 0.355556 0.02 0.987079 58 32 1625 896 60 60 0 0 AA 22.556451 75 0 2052 0 KEEP + Crb2 YES AA_1 chr2 41139733 41139733 A C exonic Lrp1b nonsynonymous SNV NM_053011:c.T4593G:p.C1531W exonic Lrp1b nonsynonymous SNV uc008jon.1:c.T4593G:p.C1531W exonic ENSMUSG00000049252 nonsynonymous SNV ENSMUST00000052550:c.T4686G:p.C1562W 2qB NA NA chr2 41139733 TGCxCAA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999997 47 2 0 21.786907 0.7 0.02 -0.087697 3 7 79 211 60 60 0 0 AA 8.419681 28 0 752 0 KEEP - Lrp1b NO AA_1 chr2 59610584 59610584 A T exonic Tanc1 nonsynonymous SNV NM_198294:c.A661T:p.S221C exonic Tanc1 nonsynonymous SNV uc008jtk.1:c.A355T:p.S119C exonic ENSMUSG00000035168 nonsynonymous SNV ENSMUST00000139863:c.A661T:p.S221C 2qC1.1 NA NA chr2 59610584 GACxGTG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 95 0 0 40.796258 0.421053 0.02 -0.341981 22 16 645 444 60 60 0 0 AA 13.234326 44 0 1220 0 KEEP + Tanc1 YES AA_1 chr2 65554096 65554096 T A intronic Scn2a1 NA NA intronic Scn2a1 NA NA intronic ENSMUSG00000075318 NA NA 2qC1.3 NA NA chr2 65554096 TTCxCCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 259 0 0 8.628087 0.108696 0.02 -0.438455 41 5 1182 131 60 60 0 0 TT 51.414888 171 0 4749 0 KEEP + Scn2a1 YES AA_1 chr2 65554097 65554097 C T intronic Scn2a1 NA NA intronic Scn2a1 NA NA intronic ENSMUSG00000075318 NA NA 2qC1.3 NA NA chr2 65554097 TCTxCTT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 252 0 0 8.479769 0.111111 0.02 -0.429646 40 5 1191 129 60 60 0 0 CC 50.535603 168 0 4761 0 KEEP + Scn2a1 NO AA_1 chr2 65554098 65554098 C A intronic Scn2a1 NA NA intronic Scn2a1 NA NA intronic ENSMUSG00000075318 NA NA 2qC1.3 NA NA chr2 65554098 CTCxTTT C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 249 0 0 7.165231 0.113636 0.02 -0.420774 39 5 1161 115 60 60 0 0 CC 50.515508 168 0 4787 0 KEEP + Scn2a1 NO AA_1 chr2 65602507 65602507 A T exonic Scn2a1 nonsynonymous SNV NM_001099298:c.A5642T:p.E1881V exonic Scn2a1 nonsynonymous SNV uc008jwo.2:c.A5642T:p.E1881V exonic ENSMUSG00000075318 nonsynonymous SNV ENSMUST00000100067:c.A5642T:p.E1881V 2qC1.3 NA NA chr2 65602507 TGGxAGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 111 2 0 64.9485 0.6 0.02 -0.350746 16 24 455 652 60 60 0 0 AA 16.499993 55 0 1486 0 KEEP + Scn2a1 YES AA_1 chr2 68546998 68546998 G C intronic 4932414N04Rik NA NA intronic 4932414N04Rik NA NA intronic ENSMUSG00000048204 NA NA 2qC2 NA NA chr2 68546998 TGTxAGT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 0.999999 59 0 0 13.723765 0.384615 0.02 -0.11402 8 5 236 151 60 60 0 0 GG 10.52904 35 0 1006 0 KEEP + 4932414N04Rik NO AA_1 chr2 71819338 71819338 C G UTR5 Rapgef4 NA NA UTR5 "Rapgef4,cAMP-GEFII" NA NA UTR5 ENSMUSG00000049044 NA NA 2qC3 NA NA chr2 71819338 CTGxCCA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 112 1 0 74.968254 0.553191 0.02 -0.412137 21 26 591 766 60 60 0 0 CC 13.518725 45 0 1221 0 KEEP + Rapgef4 NO AA_1 chr2 74520489 74520489 A T exonic Hoxd11 nonsynonymous SNV NM_008273:c.A40T:p.M14L exonic Hoxd11 nonsynonymous SNV uc008kdw.1:c.A40T:p.M14L exonic ENSMUSG00000042499 nonsynonymous SNV ENSMUST00000142312:c.A40T:p.M14L 2qC3 NA NA chr2 74520489 AGCxTGT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.714798 0.717315 0.99649 62 0 0 28.293226 0.354839 0.02 -0.271808 20 11 540 318 60 60 0 0 AA 4.510885 15 0 402 0 KEEP + Hoxd11 YES AA_1 chr2 76578307 76578307 A C exonic Ttn synonymous SNV NM_028004:c.T55317G:p.A18439A exonic Ttn synonymous SNV uc008kfo.1:c.T55317G:p.A18439A exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000011934:c.T55317G:p.A18439A 2qC3 NA NA chr2 76578307 AGCxGCA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 101 0 0 59.918716 0.511111 0.02 -0.394561 22 23 639 625 60 60 0 0 AA 14.136186 47 0 1295 0 KEEP - Ttn NO AA_1 chr2 84881324 84881324 A T exonic Ssrp1 nonsynonymous SNV NM_001136081:c.A932T:p.Y311F exonic Ssrp1 nonsynonymous SNV uc008kju.1:c.A932T:p.Y311F exonic ENSMUSG00000027067 nonsynonymous SNV ENSMUST00000028463:c.A932T:p.Y311F 2qD NA NA chr2 84881324 TCTxTGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 90 0 0 36.780367 0.518519 0.02 -0.235857 13 14 323 382 60 60 0 0 AA 16.538666 55 0 1460 0 KEEP + Ssrp1 YES AA_1 chr2 85240244 85240244 A T exonic Olfr992 nonsynonymous SNV NM_146865:c.T445A:p.Y149N exonic Olfr992 nonsynonymous SNV uc008kkf.1:c.T445A:p.Y149N exonic ENSMUSG00000075221 nonsynonymous SNV ENSMUST00000099927:c.T445A:p.Y149N 2qD NA NA chr2 85240244 TGTxTGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999999 54 0 0 13.246055 0.416667 0.02 -0.105221 7 5 186 144 60 60 0 0 AA 10.524767 35 0 931 0 KEEP - Olfr992 YES AA_1 chr2 87802889 87802889 A T exonic Olfr1157 synonymous SNV NM_146849:c.T159A:p.S53S exonic Olfr1157 synonymous SNV uc008kpa.2:c.T159A:p.S53S exonic ENSMUSG00000075143 synonymous SNV ENSMUST00000099841:c.T159A:p.S53S 2qD NA NA chr2 87802889 TTGxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999998 51 0 0 6.882441 0.230769 0.02 -0.113996 10 3 279 85 60 60 0 0 AA 10.226893 34 0 948 0 KEEP - Olfr1157 YES AA_1 chr2 92826493 92826493 T A intronic Prdm11 NA NA intronic Prdm11 NA NA exonic ENSMUSG00000075028 nonsynonymous SNV ENSMUST00000111272:c.A1283T:p.H428L 2qE1 NA NA chr2 92826493 GTGxGGT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995082 0.995084 0.999999 115 4 0 102.35154 0.569231 0.02 1.313587 28 37 757 1040 60 60 0 0 TT 10.519578 35 0 911 0 KEEP - Prdm11 YES AA_1 chr2 97470595 97470595 C T exonic Lrrc4c nonsynonymous SNV NM_178725:c.C1408T:p.R470W exonic Lrrc4c nonsynonymous SNV uc008lhf.2:c.C1408T:p.R470W exonic ENSMUSG00000050587 nonsynonymous SNV ENSMUST00000059049:c.C1408T:p.R470W 2qE1 NA NA chr2 97470595 GCAxGGA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 51 0 0 8.968414 0.210526 0.02 -0.166228 15 4 367 113 60 60 0 0 CC 8.716707 29 0 744 0 KEEP + Lrrc4c NO AA_1 chr3 100009715 100009715 A T exonic Gdap2 synonymous SNV NM_010269:c.A1470T:p.A490A exonic Gdap2 synonymous SNV uc008qqr.1:c.A1470T:p.A490A exonic ENSMUSG00000027865 synonymous SNV ENSMUST00000029459:c.A1470T:p.A490A 3qF2.2 NA NA chr3 100009715 TGCxTCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 176 2 0 36.621057 0.378378 0.02 -0.324468 23 14 647 406 60 60 0 0 AA 28.869872 96 0 2591 0 KEEP + Gdap2 YES AA_1 chr3 103133065 103133065 A G exonic Trim33 nonsynonymous SNV NM_001079830:c.A1567G:p.I523V exonic Trim33 nonsynonymous SNV uc008qsv.1:c.A1567G:p.I523V exonic ENSMUSG00000033014 nonsynonymous SNV ENSMUST00000029444:c.A1567G:p.I523V 3qF2.2 NA NA chr3 103133065 CAGxTTA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 97 0 0 20.249172 0.307692 0.02 -0.227958 18 8 493 234 60 60 0 0 AA 17.443544 58 0 1591 0 KEEP + Trim33 NO AA_1 chr3 103540177 103540177 T A exonic Olfml3 synonymous SNV NM_133859:c.A810T:p.A270A exonic Olfml3 synonymous SNV uc008qte.1:c.A627T:p.A209A exonic ENSMUSG00000027848 synonymous SNV ENSMUST00000029440:c.A810T:p.A270A 3qF2.2 NA NA chr3 103540177 ATCxGCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 140 1 0 66.542703 0.371429 0.02 1.162367 44 26 1249 742 60 60 0 0 TT 15.640231 52 0 1437 0 KEEP - Olfml3 YES AA_1 chr3 103549333 103549333 T A intronic Hipk1 NA NA intronic Hipk1 NA NA intronic "ENSMUSG00000008730,ENSMUSG00000078620" NA NA 3qF2.2 NA NA chr3 103549333 GTTxAGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 43 0 0 9.191159 0.333333 0.02 -0.105191 8 4 210 106 60 60 0 0 TT 8.720131 29 0 775 0 KEEP - Hipk1 YES AA_1 chr3 104023637 104023637 T A exonic Magi3 nonsynonymous SNV NM_001159354:c.A253T:p.T85S exonic Magi3 nonsynonymous SNV uc008qua.2:c.A253T:p.T85S exonic ENSMUSG00000052539 nonsynonymous SNV ENSMUST00000064371:c.A253T:p.T85S 3qF2.2 NA NA chr3 104023637 TGGxGAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 156 0 0 89.569226 0.603774 0.02 1.427822 21 32 582 898 60 60 0 0 TT 21.304654 71 0 1809 0 KEEP - Magi3 YES AA_1 chr3 104586601 104586601 C G exonic Ppm1j synonymous SNV NM_027982:c.C762G:p.G254G exonic Ppm1j synonymous SNV uc008quk.1:c.C762G:p.G254G exonic ENSMUSG00000002228 synonymous SNV ENSMUST00000002298:c.C762G:p.G254G 3qF2.2 NA NA chr3 104586601 TGGxCAC C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998328 0.998465 0.999863 119 3 0 22.317452 0.148649 0.02 1.33549 63 11 1740 305 60 60 0 0 CC 6.013773 20 0 545 0 KEEP + Ppm1j NO AA_1 chr3 104756012 104756012 A T exonic Wnt2b nonsynonymous SNV NM_009520:c.T496A:p.C166S exonic Wnt2b nonsynonymous SNV uc008qut.1:c.T496A:p.C166S exonic ENSMUSG00000027840 nonsynonymous SNV ENSMUST00000029429:c.T496A:p.C166S 3qF2.2 NA NA chr3 104756012 CACxGCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967423 0.967425 0.999998 96 0 0 52.12439 0.4 0.02 1.436157 30 20 878 572 60 60 0 0 AA 9.924488 33 0 902 0 KEEP - Wnt2b YES AA_1 chr3 106997861 106997861 A T exonic Kcna10 nonsynonymous SNV NM_001081140:c.A889T:p.T297S exonic Kcna10 nonsynonymous SNV uc008qwt.1:c.A889T:p.T297S exonic ENSMUSG00000042861 nonsynonymous SNV ENSMUST00000055064:c.A889T:p.T297S 3qF2.3 NA NA chr3 106997861 AAGxCTG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 84 2 0 42.596918 0.5 0.02 -0.280611 16 16 449 446 60 60 0 0 AA 12.303047 41 0 1106 0 KEEP + Kcna10 YES AA_1 chr3 108217112 108217112 A T exonic Celsr2 nonsynonymous SNV NM_001004177:c.T1301A:p.V434E exonic Celsr2 nonsynonymous SNV uc008qyx.1:c.T1301A:p.V434E exonic ENSMUSG00000068740 nonsynonymous SNV ENSMUST00000090558:c.T1301A:p.V434E 3qF3 NA NA chr3 108217112 TGCxCTA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.829926 0.835716 0.993072 51 0 0 59.294743 0.594595 0.02 -0.324007 15 22 415 597 60 60 0 0 AA 3.308251 11 0 299 0 KEEP - Celsr2 YES AA_1 chr3 108340576 108340576 C G exonic 1700013F07Rik nonsynonymous SNV NM_029314:c.C40G:p.R14G exonic 1700013F07Rik nonsynonymous SNV uc008qze.2:c.C40G:p.R14G exonic ENSMUSG00000027886 nonsynonymous SNV ENSMUST00000029485:c.C40G:p.R14G 3qF3 NA NA chr3 108340576 TTAxGCG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 134 2 0 10.924445 0.147059 0.02 -0.298026 29 5 748 147 60 60 0 0 CC 23.628308 79 0 1921 0 KEEP + 1700013F07Rik NO AA_1 chr3 109585672 109585672 T A exonic Ntng1 synonymous SNV NM_001163349:c.A1245T:p.A415A exonic Ntng1 synonymous SNV uc008rai.2:c.A1413T:p.A471A exonic ENSMUSG00000059857 synonymous SNV ENSMUST00000106569:c.A999T:p.A333A 3qF3 NA NA chr3 109585672 GGGxGCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954489 0.954491 0.999998 103 0 0 49.601187 0.434783 0.02 -0.409709 26 20 621 537 60 60 0 0 TT 9.837881 33 0 793 0 KEEP - Ntng1 YES AA_1 chr3 114825343 114825343 T A exonic Olfm3 nonsynonymous SNV NM_153157:c.T1005A:p.N335K exonic Olfm3 nonsynonymous SNV uc008rbm.1:c.T945A:p.N315K exonic ENSMUSG00000027965 nonsynonymous SNV ENSMUST00000051309:c.T1005A:p.N335K 3qF3 NA NA chr3 114825343 CAAxGTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139826 0.139832 0.999957 45 0 0 7.30165 0.25 0.02 -0.10522 9 3 242 88 60 60 0 0 TT 7.819468 26 0 706 0 KEEP + Olfm3 YES AA_1 chr3 118897311 118897311 T G intronic Dpyd NA NA intronic Dpyd NA NA intronic ENSMUSG00000033308 NA NA 3qG1 NA NA chr3 118897311 CAGxTAC T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 0.999998 54 0 0 14.881277 0.4 0.02 -0.131407 9 6 237 164 60 60 0 0 TT 9.925226 33 0 909 0 KEEP + Dpyd NO AA_1 chr3 120910216 120910216 G A exonic Tmem56 stopgain SNV NM_178936:c.C685T:p.Q229X exonic Tmem56 stopgain SNV uc008rdu.1:c.C685T:p.Q229X exonic ENSMUSG00000028132 stopgain SNV ENSMUST00000029777:c.C685T:p.Q229X 3qG1 NA NA chr3 120910216 ACTxGAT G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 63 0 0 22.736382 0.409091 0.02 -0.19268 13 9 366 249 60 60 0 0 GG 9.925352 33 0 929 0 KEEP - Tmem56 NO AA_1 chr3 122816511 122816511 G T exonic Synpo2 nonsynonymous SNV NM_080451:c.C2073A:p.F691L exonic Synpo2 nonsynonymous SNV uc012cxa.1:c.C2073A:p.F691L exonic ENSMUSG00000050315 nonsynonymous SNV ENSMUST00000051443:c.C2073A:p.F691L 3qG1 NA NA chr3 122816511 TTTxAAA G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 170 2 0 15.071985 0.112676 0.02 1.07253 63 8 1870 221 60 60 0 0 GG 22.094111 81 1 2336 21 KEEP - Synpo2 NO AA_1 chr3 142227922 142227922 A T exonic Gbp3 nonsynonymous SNV NM_018734:c.A311T:p.K104M exonic Gbp3 nonsynonymous SNV uc008rov.1:c.A311T:p.K104M exonic ENSMUSG00000028268 nonsynonymous SNV ENSMUST00000106221:c.A311T:p.K104M 3qH1 NA NA chr3 142227922 CTAxGAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 242 0 0 74.096528 0.453125 0.02 1.134314 35 29 1000 794 60 60 0 0 AA 40.863326 136 0 3800 0 KEEP + Gbp3 YES AA_1 chr3 144479773 144479773 G T exonic Clca2 synonymous SNV NM_030601:c.C450A:p.G150G exonic Clca2 synonymous SNV uc008rqa.2:c.C450A:p.G150G exonic ENSMUSG00000028262 synonymous SNV ENSMUST00000029929:c.C450A:p.G150G 3qH2 "Score=0.949184;Name=No.81918,chr3:144384388" NA chr3 144479773 TCTxCCT G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 71 3 0 15.409183 0.428571 0.02 -0.122775 8 6 232 167 60 60 0 0 GG 13.534647 45 0 1240 0 KEEP - Clca2 NO AA_1 chr3 144620333 144620333 G C exonic Clca6 nonsynonymous SNV NM_207208:c.C1718G:p.A573G exonic "AI747448,Clca6" nonsynonymous SNV uc012cza.1:c.C1475G:p.A492G exonic ENSMUSG00000068547 nonsynonymous SNV ENSMUST00000075496:c.C1472G:p.A491G 3qH2 "Score=0.901101;Name=No.81920,chr3:144570868" NA chr3 144620333 TTGxCTT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 92 0 0 10.660847 0.192308 0.02 -0.227998 21 5 610 138 60 60 0 0 GG 14.738431 49 0 1362 0 KEEP - Clca6 NO AA_1 chr3 144747985 144747985 A T exonic Clca5 nonsynonymous SNV NM_178697:c.T1289A:p.L430Q exonic "Clca2,Clca5" nonsynonymous SNV uc008rqg.1:c.T1289A:p.L430Q exonic ENSMUSG00000036960 nonsynonymous SNV ENSMUST00000040465:c.T1289A:p.L430Q 3qH2 NA NA chr3 144747985 AGCxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 73 3 0 47.391305 0.485714 0.02 -0.306681 18 17 486 498 60 60 0 0 AA 8.120401 27 0 741 0 KEEP - Clca5 YES AA_1 chr3 154429674 154429674 A T intergenic "4922501L14Rik(dist=17698),Tnni3k(dist=19581)" NA NA intergenic "4922501L14Rik(dist=17698),Tnni3k(dist=19581)" NA NA UTR3 ENSMUSG00000078161 NA NA 3qH4 NA NA chr3 154429674 AGCxATT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 90 0 0 29.157404 0.458333 0.02 -0.21046 13 11 367 311 60 60 0 0 AA 15.640507 52 0 1439 0 KEEP NA 4922501L14Rik YES AA_1 chr3 40549650 40549650 A T exonic Hspa4l synonymous SNV NM_011020:c.A51T:p.V17V exonic "Hspa4l,apg-1b" synonymous SNV uc008pbj.1:c.A51T:p.V17V exonic ENSMUSG00000025757 synonymous SNV ENSMUST00000077083:c.A51T:p.V17V 3qB NA NA chr3 40549650 TGTxGCG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990962 0.990964 0.999998 120 0 0 54.238816 0.355932 0.02 1.258625 38 21 1074 609 60 60 0 0 AA 10.225562 34 0 935 0 KEEP + Hspa4l YES AA_1 chr3 55206135 55206135 A T intronic Dclk1 NA NA intronic Dclk1 NA NA intronic ENSMUSG00000027797 NA NA 3qC NA NA chr3 55206135 CTCxCTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 184 0 0 93.977199 0.507463 0.02 1.206547 33 34 867 979 60 60 0 0 AA 29.755035 99 0 2604 0 KEEP + Dclk1 YES AA_1 chr3 55435902 55435902 T A exonic Nbea nonsynonymous SNV NM_030595:c.A8359T:p.S2787C exonic Nbea nonsynonymous SNV uc008pgt.2:c.A1768T:p.S590C exonic ENSMUSG00000027799 nonsynonymous SNV ENSMUST00000168777:c.A643T:p.S215C 3qC NA NA chr3 55435902 CACxGAT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 212 6 0 92.432338 0.443038 0.02 1.190613 44 35 1285 993 60 60 0 0 TT 27.972949 93 0 2588 0 KEEP - Nbea YES AA_1 chr3 58221025 58221025 C T exonic Tsc22d2 nonsynonymous SNV NM_001081229:c.C1415T:p.P472L exonic Tsc22d2 nonsynonymous SNV uc008php.1:c.C1415T:p.P472L exonic ENSMUSG00000027806 nonsynonymous SNV ENSMUST00000099090:c.C1415T:p.P472L 3qD NA NA chr3 58221025 CTCxGCA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.989627 0.999948 0.989678 139 4 0 125.392999 0.469388 0.02 1.033313 52 46 1451 1329 60 60 0 0 CC 7.212755 24 0 631 0 KEEP + Tsc22d2 NO AA_1 chr3 59122452 59122452 T A exonic Igsf10 nonsynonymous SNV NM_001162884:c.A7721T:p.Y2574F exonic Igsf10 nonsynonymous SNV uc008piu.2:c.A7721T:p.Y2574F exonic ENSMUSG00000036334 nonsynonymous SNV ENSMUST00000039419:c.A7721T:p.Y2574F 3qD NA NA chr3 59122452 TTAxAGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 103 0 0 47.640698 0.548387 0.02 -0.271825 14 17 370 488 60 60 0 0 TT 15.935195 53 0 1406 0 KEEP - Igsf10 YES AA_1 chr3 59124150 59124150 G C exonic Igsf10 nonsynonymous SNV NM_001162884:c.C6023G:p.P2008R exonic Igsf10 nonsynonymous SNV uc008piu.2:c.C6023G:p.P2008R exonic ENSMUSG00000036334 nonsynonymous SNV ENSMUST00000039419:c.C6023G:p.P2008R 3qD NA NA chr3 59124150 GCAxGTG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 71 2 0 22.579063 0.30303 0.02 -0.289388 23 10 691 266 60 60 0 0 GG 10.828442 36 0 1015 0 KEEP - Igsf10 NO AA_1 chr3 82818138 82818138 A T exonic Fgg nonsynonymous SNV NM_133862:c.A1205T:p.Y402F exonic Fgg nonsynonymous SNV uc008ppd.1:c.A1205T:p.Y402F exonic ENSMUSG00000033860 nonsynonymous SNV ENSMUST00000048486:c.A1205T:p.Y402F 3qE3 NA NA chr3 82818138 GGTxTTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054131 0.054137 0.999892 36 0 0 10.799699 0.5 0.02 -0.070148 4 4 108 113 60 60 0 0 AA 6.915614 23 0 607 0 KEEP + Fgg YES AA_1 chr3 86800504 86800504 A T exonic Cd1d1 stoploss SNV NM_007639:c.T1009A:p.X337R exonic "Cd1d1,Cd1d2" stoploss SNV uc012crf.1:c.T616A:p.X206R exonic ENSMUSG00000028076 stoploss SNV ENSMUST00000063869:c.T616A:p.X206R 3qF1 "Score=0.953994;Name=No.81674,chr3:86790217" NA chr3 86800504 GTCxCCG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 189 4 12 24.356689 0.180328 0.02 1.25875 50 11 1375 316 60 46 0 0 AA 27.057418 90 0 2412 0 KEEP - Cd1d1 YES AA_1 chr3 88146902 88146902 A T exonic Smg5 nonsynonymous SNV NM_178246:c.A398T:p.Y133F exonic Smg5 nonsynonymous SNV uc012crq.1:c.A299T:p.Y100F exonic ENSMUSG00000001415 nonsynonymous SNV ENSMUST00000001451:c.A398T:p.Y133F 3qF1 NA NA chr3 88146902 ACTxCCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94173 0.941741 0.999988 90 0 0 62.589608 0.489362 0.02 -0.410741 24 23 620 657 60 60 0 0 AA 8.119707 27 0 726 0 KEEP + Smg5 YES AA_1 chr3 89048692 89048692 T A intronic Trim46 NA NA intronic Trim46 NA NA UTR5 ENSMUSG00000042766 NA NA 3qF1 NA NA chr3 89048692 GGGxGTT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 138 4 0 66.873468 0.403226 0.02 1.331331 37 25 1003 731 60 60 0 0 TT 14.685527 49 0 1263 0 KEEP - Trim46 YES AA_1 chr3 92628042 92628042 C T exonic Kprp nonsynonymous SNV NM_028629:c.G1622A:p.R541H exonic Kprp nonsynonymous SNV uc008qes.1:c.G1622A:p.R541H exonic ENSMUSG00000059832 nonsynonymous SNV ENSMUST00000072363:c.G1622A:p.R541H 3qF1 NA NA chr3 92628042 GGAxGTG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 215 0 0 187.516647 0.496552 0.02 2.110961 73 72 1937 1968 60 60 0 0 CC 16.518587 55 0 1415 0 KEEP - Kprp NO AA_1 chr3 93576952 93576952 G A intergenic "Tdpoz1(dist=96747),Tdpoz4(dist=23368)" NA NA intergenic "Tdpoz1(dist=96747),Tdpoz4(dist=23368)" NA NA exonic ENSMUSG00000068879 nonsynonymous SNV ENSMUST00000090853:c.G8A:p.G3E 3qF2.1 "Score=0.948976;Name=No.81787,chr3:93412677" NA chr3 93576952 CAGxGGA G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 465 2 10 12.867793 0.072917 0.02 0.951827 89 7 2610 204 60 60 0 0 GG 83.251123 277 0 7717 0 KEEP NA Tdpoz1 NO AA_1 chr3 93576954 93576954 G A intergenic "Tdpoz1(dist=96749),Tdpoz4(dist=23366)" NA NA intergenic "Tdpoz1(dist=96749),Tdpoz4(dist=23366)" NA NA exonic ENSMUSG00000068879 nonsynonymous SNV ENSMUST00000090853:c.G10A:p.D4N 3qF2.1 "Score=0.948976;Name=No.81787,chr3:93412677" NA chr3 93576954 GGGxACA G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 470 3 10 12.174303 0.072917 0.02 0.854273 89 7 2606 197 60 60 0 0 GG 83.274782 277 0 7817 0 KEEP NA Tdpoz1 NO AA_1 chr3 94206900 94206900 C T exonic Lingo4 nonsynonymous SNV NM_177250:c.C1222T:p.P408S exonic Lingo4 nonsynonymous SNV uc008qgb.1:c.C1222T:p.P408S exonic ENSMUSG00000044505 nonsynonymous SNV ENSMUST00000050975:c.C1222T:p.P408S 3qF2.1 NA NA chr3 94206900 CCCxCTG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 196 0 0 97.252057 0.4625 0.02 1.173182 43 37 1293 1036 60 60 0 0 CC 23.097002 77 0 2117 0 KEEP + Lingo4 NO AA_1 chr3 95487762 95487762 C G exonic Adamtsl4 nonsynonymous SNV NM_144899:c.G817C:p.E273Q exonic Adamtsl4 nonsynonymous SNV uc008qkm.1:c.G817C:p.E273Q exonic ENSMUSG00000015850 nonsynonymous SNV ENSMUST00000015994:c.G817C:p.E273Q 3qF2.1 NA NA chr3 95487762 GCTxTGC C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970693 0.97082 0.999869 87 4 0 73.150482 0.490566 0.02 1.625419 27 26 799 767 60 60 0 0 CC 6.317374 21 0 602 0 KEEP - Adamtsl4 NO AA_1 chr3 97393927 97393927 T A splicing Chd1l(NM_026539:exon11:c.971-2A>T) NA NA splicing "Chd1l(uc008qow.1:exon11:c.971-2A>T,uc008qox.1:exon11:c.971-2A>T)" NA NA splicing ENSMUSG00000028089(ENSMUST00000029730:exon11:c.971-2A>T) NA NA 3qF2.2 NA NA chr3 97393927 ACCxAGG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999998 79 0 0 55.327158 0.526316 0.02 -0.341863 18 20 477 572 60 60 0 0 TT 9.88273 33 0 835 0 KEEP - Chd1l YES AA_1 chr3 98101457 98101457 A T exonic Hmgcs2 nonsynonymous SNV NM_008256:c.A1007T:p.E336V exonic Hmgcs2 nonsynonymous SNV uc008qpr.2:c.A1007T:p.E336V exonic ENSMUSG00000027875 nonsynonymous SNV ENSMUST00000090746:c.A1007T:p.E336V 3qF2.2 NA NA chr3 98101457 TAGxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 88 2 0 19.562298 0.347826 0.02 -0.210481 15 8 446 222 60 60 0 0 AA 15.641905 52 0 1465 0 KEEP + Hmgcs2 YES AA_1 chr4 101509835 101509835 A T exonic B020004J07Rik nonsynonymous SNV NM_001033790:c.T455A:p.V152E exonic B020004J07Rik nonsynonymous SNV uc008twc.1:c.T455A:p.V152E exonic ENSMUSG00000035201 nonsynonymous SNV ENSMUST00000084386:c.T455A:p.V152E 4qC6 NA NA chr4 101509835 GATxCTA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999997 44 0 0 7.854926 0.428571 0.02 -0.061384 4 3 111 85 60 60 0 0 AA 9.021395 30 0 800 0 KEEP - B020004J07Rik YES AA_1 chr4 102684534 102684534 T A ncRNA_exonic BB031773 NA NA ncRNA_exonic BB031773 NA NA ncRNA_exonic ENSMUSG00000085041 NA NA 4qC6 NA NA chr4 102684534 CACxAGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 250 0 0 115.637598 0.722222 0.02 1.311207 15 39 430 1109 60 60 0 0 TT 44.793342 149 0 4064 0 KEEP - BB031773 YES AA_1 chr4 103026284 103026284 T C intronic Oma1 NA NA intronic Oma1 NA NA intronic ENSMUSG00000035069 NA NA 4qC6 NA NA chr4 103026284 TACxTTT T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 56 0 0 32.436413 0.52381 0.02 -0.184177 10 11 283 335 60 60 0 0 TT 8.720659 29 0 796 0 KEEP + Oma1 NO AA_1 chr4 104708880 104708880 A T exonic Prkaa2 synonymous SNV NM_178143:c.T1476A:p.A492A exonic Prkaa2 synonymous SNV uc008tyd.2:c.T1476A:p.A492A exonic ENSMUSG00000028518 synonymous SNV ENSMUST00000030243:c.T1476A:p.A492A 4qC6 NA NA chr4 104708880 CGCxGCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 61 1 0 43.220898 0.736842 0.02 -0.166634 5 14 143 413 60 60 0 1 AA 10.226102 34 0 938 0 KEEP - Prkaa2 YES AA_1 chr4 106119892 106119892 A T intronic Pcsk9 NA NA intronic Pcsk9 NA NA intronic ENSMUSG00000044254 NA NA 4qC7 NA NA chr4 106119892 ACAxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 94 3 0 14.472817 0.159091 0.02 -0.385843 37 7 1056 195 60 60 0 0 AA 9.623968 32 0 874 0 KEEP - Pcsk9 YES AA_1 chr4 106295208 106295208 T A exonic Ttc22 nonsynonymous SNV NM_177667:c.T53A:p.L18Q exonic Ttc22 nonsynonymous SNV uc008tyn.1:c.T53A:p.L18Q exonic ENSMUSG00000034919 nonsynonymous SNV ENSMUST00000047922:c.T53A:p.L18Q 4qC7 NA NA chr4 106295208 AACxGGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 201 6 0 166.110028 0.717949 0.02 1.191181 22 56 628 1596 60 60 0 0 TT 25.858008 86 0 2350 0 KEEP + Ttc22 YES AA_1 chr4 106347093 106347093 C G exonic Ttc4 nonsynonymous SNV NM_001172073:c.G257C:p.G86A exonic Ttc4 nonsynonymous SNV uc008tyr.2:c.G257C:p.G86A exonic ENSMUSG00000025413 nonsynonymous SNV ENSMUST00000026480:c.G392C:p.G131A 4qC7 NA NA chr4 106347093 TTGxCTA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 114 0 0 14.053233 0.222222 0.02 -0.236783 21 6 608 174 60 60 0 0 CC 21.356724 71 0 1994 0 KEEP - Ttc4 NO AA_1 chr4 106863212 106863212 A T exonic Tmem59 nonsynonymous SNV NM_029565:c.A463T:p.M155L exonic Tmem59 nonsynonymous SNV uc008tzj.2:c.A463T:p.M155L exonic ENSMUSG00000028618 nonsynonymous SNV ENSMUST00000106753:c.A262T:p.M88L 4qC7 NA NA chr4 106863212 ATGxTGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 60 0 0 26.129802 0.642857 0.02 -0.131533 5 9 135 258 60 60 0 0 AA 11.124682 37 0 1004 0 KEEP + Tmem59 YES AA_1 chr4 115506398 115506398 C T exonic Mob3c synonymous SNV NM_175308:c.C579T:p.I193I exonic Mobkl2c synonymous SNV uc008ufk.1:c.C579T:p.I193I exonic ENSMUSG00000028709 synonymous SNV ENSMUST00000030477:c.C579T:p.I193I 4qD1 NA NA chr4 115506398 CATxCAG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999999 74 2 0 10.865608 0.15625 0.02 -0.280643 27 5 794 145 60 60 0 0 CC 10.528465 35 0 991 0 KEEP + Mob3c NO AA_1 chr4 115979486 115979486 T G exonic Mast2 nonsynonymous SNV NM_008641:c.A5319C:p.E1773D exonic Mast2 nonsynonymous SNV uc008ugo.1:c.A5319C:p.E1773D exonic ENSMUSG00000003810 nonsynonymous SNV ENSMUST00000003908:c.A5136C:p.E1712D 4qD1 NA NA chr4 115979486 AAGxTCT T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 84 0 0 33.994244 0.464286 0.02 -0.245427 15 13 419 362 60 60 0 0 TT 12.928936 43 0 1161 0 KEEP - Mast2 NO AA_1 chr4 118920017 118920017 A T intronic Lepre1 NA NA intronic Lepre1 NA NA intronic ENSMUSG00000028641 NA NA 4qD2.1 NA NA chr4 118920017 CTGxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 91 2 0 12.269457 0.157895 0.02 -0.333239 32 6 914 166 60 60 1 0 AA 12.331126 41 0 1133 0 KEEP + Lepre1 YES AA_1 chr4 120778499 120778499 A C exonic Tmco2 nonsynonymous SNV NM_001081312:c.T407G:p.L136R exonic Tmco2 nonsynonymous SNV uc008unz.1:c.T407G:p.L136R exonic ENSMUSG00000078577 nonsynonymous SNV ENSMUST00000106268:c.T407G:p.L136R 4qD2.2 NA NA chr4 120778499 TGAxGTT A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 103 0 0 28.230168 0.52381 0.02 -0.184136 10 11 297 293 60 60 0 0 AA 19.249697 64 0 1776 0 KEEP - Tmco2 NO AA_1 chr4 122967541 122967541 G C exonic Pabpc4 nonsynonymous SNV NM_130881:c.G603C:p.E201D exonic Pabpc4 nonsynonymous SNV uc008upb.1:c.G603C:p.E201D exonic ENSMUSG00000011257 nonsynonymous SNV ENSMUST00000078734:c.G603C:p.E201D 4qD2.2 NA NA chr4 122967541 AGAxGTG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 169 1 8 68.667237 0.72973 0.02 -0.341729 10 27 285 652 60 60 0 0 GG 31.861437 106 0 2957 0 KEEP + Pabpc4 NO AA_1 chr4 122972001 122972001 G C exonic Pabpc4 nonsynonymous SNV NM_130881:c.G1159C:p.A387P exonic "Gm12612,Pabpc4" nonsynonymous SNV uc008upe.1:c.G493C:p.A165P exonic ENSMUSG00000011257 nonsynonymous SNV ENSMUST00000078734:c.G1159C:p.A387P 4qD2.2 NA NA chr4 122972001 GTGxCGG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 45 0 0 29.571833 0.625 0.02 -0.140324 6 10 174 294 60 60 0 0 GG 6.310142 21 0 550 0 KEEP + Pabpc4 NO AA_1 chr4 123148730 123148730 A C exonic Macf1 nonsynonymous SNV NM_001199136:c.T9480G:p.I3160M exonic Macf1 nonsynonymous SNV uc008upr.2:c.T9480G:p.I3160M exonic ENSMUSG00000028649 nonsynonymous SNV ENSMUST00000106213:c.T4785G:p.I1595M 4qD2.2 NA NA chr4 123148730 AGAxATT A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 63 2 0 8.501761 0.25 0.02 -0.14023 12 4 345 105 60 60 0 0 AA 11.430032 38 0 1060 0 KEEP - Macf1 NO AA_1 chr4 124335697 124335697 T A exonic Pou3f1 nonsynonymous SNV NM_011141:c.T748A:p.S250T exonic Pou3f1 nonsynonymous SNV uc008uqt.1:c.T748A:p.S250T exonic ENSMUSG00000078236 nonsynonymous SNV ENSMUST00000105033:c.T748A:p.S250T 4qD2.2 NA NA chr4 124335697 AGCxCCG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 123 0 0 39.356833 0.313725 0.02 1.24798 35 16 1014 455 60 60 0 0 TT 16.524648 55 0 1480 0 KEEP + Pou3f1 YES AA_1 chr4 129254499 129254499 A T exonic Fam167b nonsynonymous SNV NM_182783:c.T299A:p.L100Q exonic Fam167b nonsynonymous SNV uc008uxl.2:c.T299A:p.L100Q exonic ENSMUSG00000050493 nonsynonymous SNV ENSMUST00000052835:c.T299A:p.L100Q 4qD2.2 NA NA chr4 129254499 AGCxGCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 143 0 0 17.157653 0.128571 0.02 1.180496 61 9 1695 245 60 60 0 0 AA 16.522345 55 0 1484 0 KEEP - Fam167b YES AA_1 chr4 133683690 133683690 T A exonic Sh3bgrl3 nonsynonymous SNV NM_080559:c.A248T:p.Q83L exonic Sh3bgrl3 nonsynonymous SNV uc008vec.1:c.A248T:p.Q83L exonic ENSMUSG00000028843 nonsynonymous SNV ENSMUST00000105879:c.A80T:p.Q27L 4qD3 NA NA chr4 133683690 TCCxGCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 73 0 0 13.553391 0.222222 0.02 -0.236777 21 6 604 169 60 60 0 0 TT 12.031454 40 0 1113 0 KEEP - Sh3bgrl3 YES AA_1 chr4 134880895 134880895 T C exonic Srrm1 synonymous SNV NM_001130477:c.A2082G:p.K694K exonic Srrm1 synonymous SNV uc008vgg.2:c.A1830G:p.K610K exonic ENSMUSG00000028809 synonymous SNV ENSMUST00000105861:c.A2055G:p.K685K 4qD3 NA NA chr4 134880895 CCGxTTG T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 247 8 0 12.409186 0.073684 0.02 1.015898 88 7 2428 199 60 60 0 0 TT 33.315526 111 0 2946 0 KEEP - Srrm1 NO AA_1 chr4 137200270 137200270 A G exonic Usp48 nonsynonymous SNV NM_130879:c.A2791G:p.T931A exonic Usp48 nonsynonymous SNV uc008vjl.1:c.A2791G:p.T931A exonic ENSMUSG00000043411 nonsynonymous SNV ENSMUST00000141628:c.A484G:p.T162A 4qD3 NA NA chr4 137200270 AGTxCCA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 41 0 0 21.868068 0.777778 0.02 -0.087693 2 7 54 206 60 60 0 0 AA 7.217185 24 0 642 0 KEEP + Usp48 NO AA_1 chr4 139386120 139386120 T C exonic Pax7 nonsynonymous SNV NM_011039:c.A254G:p.K85R exonic Pax7 nonsynonymous SNV uc008vms.1:c.A254G:p.K85R exonic ENSMUSG00000028736 nonsynonymous SNV ENSMUST00000030508:c.A254G:p.K85R 4qD3 NA NA chr4 139386120 ATCxTGG T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 104 0 0 55.958658 0.444444 0.02 -0.402287 25 20 675 598 60 60 0 0 TT 13.235412 44 0 1238 0 KEEP - Pax7 NO AA_1 chr4 140608965 140608965 G C exonic Crocc nonsynonymous SNV NM_172122:c.C102G:p.S34R exonic Crocc nonsynonymous SNV uc008vns.2:c.C102G:p.S34R exonic ENSMUSG00000040860 nonsynonymous SNV ENSMUST00000102491:c.C102G:p.S34R 4qD3 NA NA chr4 140608965 CAGxCTC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.80019 0.800245 0.999931 67 0 0 15.535103 0.205882 0.02 -0.30694 27 7 783 197 60 60 0 0 GG 7.498891 25 0 670 0 KEEP - Crocc NO AA_1 chr4 140726893 140726893 T G intronic Fbxo42 NA NA intronic Fbxo42 NA NA intronic ENSMUSG00000028920 NA NA 4qD3 NA NA chr4 140726893 AACxTTC T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139817 0.139832 0.999892 40 2 0 15.648133 0.5 0.02 -0.105233 6 6 176 164 60 60 0 0 TT 6.918175 23 0 641 0 KEEP + Fbxo42 NO AA_1 chr4 141397546 141397546 T G exonic Ctrc unknown UNKNOWN exonic Ctrc nonsynonymous SNV uc012dof.1:c.A260C:p.N87T exonic ENSMUSG00000062478 nonsynonymous SNV ENSMUST00000105781:c.A260C:p.N87T 4qE1 NA NA chr4 141397546 TCGxTCC T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999998 70 0 0 37.675002 0.65 0.02 -0.175389 7 13 197 371 60 60 0 0 TT 10.225768 34 0 933 0 KEEP - Ctrc NO AA_1 chr4 141511209 141511209 T A exonic Fhad1 nonsynonymous SNV NM_177868:c.A1535T:p.Q512L exonic Fhad1 nonsynonymous SNV uc012dog.1:c.A1535T:p.Q512L exonic ENSMUSG00000051435 nonsynonymous SNV ENSMUST00000105779:c.A1535T:p.Q512L 4qE1 NA NA chr4 141511209 ACCxGCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 157 1 0 89.257708 0.697674 0.02 -0.38585 13 30 376 864 60 60 0 0 TT 24.66093 82 0 2260 0 KEEP - Fhad1 YES AA_1 chr4 143749193 143749193 A T exonic Oog3 nonsynonymous SNV NM_201258:c.T737A:p.L246Q exonic Oog3 nonsynonymous SNV uc008vqx.2:c.T737A:p.L246Q exonic ENSMUSG00000050810 nonsynonymous SNV ENSMUST00000050933:c.T737A:p.L246Q 4qE1 NA NA chr4 143749193 CTCxGGT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 80 0 0 29.429412 0.714286 0.02 -0.122775 4 10 118 283 60 60 0 0 AA 17.745737 59 0 1631 0 KEEP - Oog3 YES AA_1 chr4 143996005 143996005 A T intronic Pramef12 NA NA intronic Pramef12 NA NA ncRNA_exonic ENSMUSG00000028590 NA NA 4qE1 NA NA chr4 143996005 TGGxCCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 89 0 0 9.173368 0.285714 0.02 -0.122657 10 4 264 109 60 60 0 0 AA 18.640214 62 0 1702 0 KEEP - Pramef12 YES AA_1 chr4 145489259 145489259 G C intergenic "Gm13238(dist=61364),1700095A21Rik(dist=161907)" NA NA exonic Gm13051 nonsynonymous SNV uc008vsa.1:c.G585C:p.Q195H exonic ENSMUSG00000078500 nonsynonymous SNV ENSMUST00000123460:c.G585C:p.Q195H 4qE1 "Score=0.986863;Name=No.86634,chr4:146677141" NA chr4 145489259 CCAxAGA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 78 0 30 10.999153 0.5 0.02 -0.070162 4 4 120 115 54 37 0 0 GG 17.147532 57 0 1638 0 KEEP + Gm13238 NO AA_1 chr4 146632616 146632616 A T intronic Gm13152 NA NA ncRNA_intronic AK082693 NA NA ncRNA_exonic ENSMUSG00000087207 NA NA 4qE1 "Score=0.980581;Name=No.86589,chr4:145274520" NA chr4 146632616 AGCxAGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 639 38 63 7.265269 0.111111 0.02 -0.315147 32 4 894 108 60 37 0 0 AA 139.1769 463 0 12631 0 KEEP - Gm13152 YES AA_1 chr4 146764374 146764374 T G intronic Gm13152 NA NA intronic Gm13152 NA NA exonic ENSMUSG00000078497 nonsynonymous SNV ENSMUST00000133078:c.T268G:p.F90V 4qE1 "Score=0.985564;Name=No.86848,chr4:146406635,No.86755,chr4:145861280" NA chr4 146764374 ATTxTCA T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 1113 5 0 10.64148 0.054054 0.02 2.973742 105 6 2972 179 60 60 0 0 TT 265.551264 883 0 24589 0 KEEP + Gm13152 NO AA_1 chr4 146764381 146764381 A C intronic Gm13152 NA NA intronic Gm13152 NA NA exonic ENSMUSG00000078497 nonsynonymous SNV ENSMUST00000133078:c.A275C:p.E92A 4qE1 "Score=0.985564;Name=No.86848,chr4:146406635,No.86755,chr4:145861280" NA chr4 146764381 ATGxGCA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 1120 4 0 8.709957 0.053097 0.02 2.364494 107 6 3077 160 60 60 0 0 AA 267.98528 891 0 24926 0 KEEP + Gm13152 NO AA_1 chr4 147540054 147540054 T C intronic Fbxo2 NA NA intronic Fbxo2 NA NA intronic ENSMUSG00000041556 NA NA 4qE2 NA NA chr4 147540054 ACGxGCT T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 478 8 0 62.335233 0.208633 0.02 2.539237 110 29 3071 794 60 60 0 0 TT 74.847945 249 0 6646 0 KEEP + Fbxo2 NO AA_1 chr4 147628334 147628334 A T intronic Ptchd2 NA NA intronic "Ptchd2,mKIAA1337" NA NA intronic ENSMUSG00000041544 NA NA 4qE2 NA NA chr4 147628334 AGCxTGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 82 0 0 77.396576 0.684211 0.02 -0.33317 12 26 336 753 60 60 0 0 AA 8.721462 29 0 784 0 KEEP - Ptchd2 YES AA_1 chr4 148033335 148033335 C T intronic Gm572 NA NA intronic Gm572 NA NA intronic ENSMUSG00000070577 NA NA 4qE2 NA NA chr4 148033335 TCTxTCT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 78 0 0 11.258845 0.217391 0.02 -0.20159 18 5 513 141 60 60 0 0 CC 12.334375 41 0 1182 0 KEEP + Gm572 NO AA_1 chr4 151513131 151513131 T A intronic Espn NA NA intronic Espn NA NA intronic ENSMUSG00000028943 NA NA 4qE2 NA NA chr4 151513131 CCCxGTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 143 0 0 157.465321 0.768116 0.02 1.27868 16 53 435 1484 60 60 0 0 TT 17.443237 58 0 1587 0 KEEP - Espn YES AA_1 chr4 151513147 151513147 C A splicing Espn(NM_207687:exon4:c.675+1G>T) NA NA splicing Espn(uc008vzt.1:exon4:c.675+1G>T) NA NA splicing "ENSMUSG00000028943(ENSMUST00000030785:exon4:c.675+1G>T,ENSMUST00000105659:exon4:c.675+1G>T,ENSMUST00000105658:exon4:c.675+1G>T,ENSMUST00000135185:exon3:c.381+1G>T)" NA NA 4qE2 NA NA chr4 151513147 TCAxCAG C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 147 0 0 148.191952 0.73913 0.02 1.171125 18 51 518 1411 60 60 0 0 CC 17.745839 59 0 1632 0 KEEP - Espn NO AA_1 chr4 154259126 154259126 A T exonic Mmel1 nonsynonymous SNV NM_013783:c.A568T:p.M190L exonic Mmel1 nonsynonymous SNV uc008wcg.1:c.A295T:p.M99L exonic ENSMUSG00000058183 nonsynonymous SNV ENSMUST00000131758:c.A295T:p.M99L 4qE2 NA NA chr4 154259126 GCCxTGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 131 3 0 119.354803 0.78 0.02 1.346277 11 39 306 1122 60 60 0 0 AA 20.145304 67 0 1785 0 KEEP + Mmel1 YES AA_1 chr4 155195108 155195108 A T exonic Ccnl2 nonsynonymous SNV NM_207678:c.A885T:p.E295D exonic Ccnl2 nonsynonymous SNV uc008wew.1:c.A885T:p.E295D exonic ENSMUSG00000029068 nonsynonymous SNV ENSMUST00000030944:c.A885T:p.E295D 4qE2 NA NA chr4 155195108 TGAxGTG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.291904 0.292001 0.999667 54 0 0 29.54763 0.647059 0.02 -0.149057 6 11 174 291 60 60 0 0 AA 9.324706 31 0 868 0 KEEP + Ccnl2 YES AA_1 chr4 155549309 155549309 T A exonic Agrn synonymous SNV NM_021604:c.A2277T:p.P759P exonic Agrn synonymous SNV uc008wgf.1:c.A1773T:p.P591P exonic ENSMUSG00000041936 synonymous SNV ENSMUST00000075787:c.A1773T:p.P591P 4qE2 NA NA chr4 155549309 CAGxGGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 83 0 0 69.676613 0.741935 0.02 -0.28062 8 23 229 664 60 60 0 0 TT 12.330735 41 0 1115 0 KEEP - Agrn YES AA_1 chr4 155604195 155604195 T C exonic Klhl17 nonsynonymous SNV NM_198305:c.A1871G:p.N624S exonic Klhl17 nonsynonymous SNV uc008wgs.2:c.A1871G:p.N624S exonic ENSMUSG00000078484 nonsynonymous SNV ENSMUST00000105569:c.A1871G:p.N624S 4qE2 NA NA chr4 155604195 AAGxTGA T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 71 1 0 24.88219 0.30303 0.02 -0.289335 23 10 621 289 60 60 0 0 TT 10.20708 34 0 879 0 KEEP - Klhl17 NO AA_1 chr4 32835725 32835725 A T intronic Mdn1 NA NA intronic Mdn1 NA NA intronic ENSMUSG00000058006 NA NA 4qA5 NA NA chr4 32835725 CTCxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260954 0.260965 0.999957 45 0 0 35.413344 0.75 0.02 -0.140302 4 12 112 336 60 60 0 0 AA 7.820864 26 0 730 0 KEEP + Mdn1 YES AA_1 chr4 43505916 43505916 G A ncRNA_exonic Rmrp NA NA ncRNA_exonic Rmrp NA NA ncRNA_exonic ENSMUSG00000088088 NA NA 4qB1 NA NA chr4 43505916 CAGxCCT G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 107 0 0 18.751804 0.307692 0.02 -0.236563 18 8 505 219 60 60 0 0 GG 18.260782 61 0 1633 0 KEEP - Rmrp NO AA_1 chr4 45007211 45007211 A T exonic Zbtb5 nonsynonymous SNV NM_001163283:c.T1044A:p.S348R exonic Zbtb5 nonsynonymous SNV uc008ssc.2:c.T1044A:p.S348R exonic ENSMUSG00000049657 nonsynonymous SNV ENSMUST00000055028:c.T1044A:p.S348R 4qB1 NA NA chr4 45007211 CTCxCTG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 45 0 0 34.176526 0.6 0.02 -0.17539 8 12 225 343 60 60 0 0 AA 5.412883 18 0 485 0 KEEP - Zbtb5 YES AA_1 chr4 88336582 88336582 T C exonic Ifnab nonsynonymous SNV NM_008336:c.A550G:p.S184G exonic Ifnab nonsynonymous SNV uc008tnj.1:c.A550G:p.S184G exonic ENSMUSG00000078353 nonsynonymous SNV ENSMUST00000105146:c.A550G:p.S184G 4qC4 NA NA chr4 88336582 GACxTGC T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 499 8 0 78.252399 0.260504 0.02 2.938542 88 31 2565 931 60 60 0 0 TT 83.559078 278 0 7745 0 KEEP - Ifnab NO AA_1 chr4 94307190 94307190 A T exonic Lrrc19 nonsynonymous SNV NM_175305:c.T545A:p.L182Q exonic Lrrc19 nonsynonymous SNV uc008tsh.1:c.T545A:p.L182Q exonic ENSMUSG00000049799 nonsynonymous SNV ENSMUST00000053419:c.T545A:p.L182Q 4qC5 NA NA chr4 94307190 AGTxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 52 0 0 21.567729 0.777778 0.02 -0.078929 2 7 56 203 60 60 0 0 AA 9.32401 31 0 858 0 KEEP + Lrrc19 YES AA_1 chr5 107936081 107936081 A T exonic A830010M20Rik nonsynonymous SNV NM_001007574:c.A1190T:p.Q397L exonic A830010M20Rik nonsynonymous SNV uc008ymg.2:c.A1187T:p.Q396L exonic ENSMUSG00000044060 nonsynonymous SNV ENSMUST00000100951:c.A1190T:p.Q397L 5qE5 NA NA chr5 107936081 GTCxGCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 64 0 0 25.274388 0.5 0.02 -0.157859 9 9 259 264 60 60 0 0 AA 10.52761 35 0 975 0 KEEP + A830010M20Rik YES AA_1 chr5 109302925 109302925 A G intergenic "Vmn2r9(dist=21396),Vmn2r10(dist=121633)" NA NA intergenic "AK142627(dist=15684),Vmn2r10(dist=119506)" NA NA intergenic "ENSMUSG00000072766(dist=5552),ENSMUSG00000067010(dist=121633)" NA NA 5qF "Score=0.923563;Name=No.90946,chr5:109493268" NA chr5 109302925 GAGxAGG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 443 4 7 35.097326 0.120567 0.02 2.530338 124 17 3539 495 60 60 0 0 AA 75.744793 252 0 6928 0 KEEP NA Vmn2r9 NO AA_1 chr5 111185149 111185149 G C exonic Ep400 nonsynonymous SNV NM_029337:c.C602G:p.A201G exonic Ep400 nonsynonymous SNV uc008yrg.1:c.C602G:p.A201G exonic ENSMUSG00000029505 nonsynonymous SNV ENSMUST00000041558:c.C602G:p.A201G 5qF NA NA chr5 111185149 TGGxCCA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999803 0.999804 0.999999 133 0 0 38.469658 0.191011 0.02 1.013095 72 17 2084 492 60 60 0 0 GG 10.526929 35 0 967 0 KEEP - Ep400 NO AA_1 chr5 112904459 112904459 A T exonic Sez6l stopgain SNV NM_001253916:c.T245A:p.L82X exonic Sez6l stopgain SNV uc008ytj.1:c.T128A:p.L43X exonic ENSMUSG00000058153 stopgain SNV ENSMUST00000075387:c.T245A:p.L82X 5qF NA NA chr5 112904459 GGCxAGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 416 6 0 331.452297 0.490421 0.02 7.146296 133 128 3758 3490 60 60 0 0 AA 25.139039 84 0 2243 0 KEEP - Sez6l YES AA_1 chr5 114492376 114492376 A T intronic Svop NA NA intronic Svop NA NA intronic ENSMUSG00000042078 NA NA 5qF NA NA chr5 114492376 GACxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.580216 0.58293 0.995343 45 0 0 31.731974 0.461538 0.02 -0.227952 14 12 395 338 60 60 0 0 AA 4.21106 14 0 390 0 KEEP - Svop YES AA_1 chr5 114510154 114510154 C G intronic Svop NA NA intronic Svop NA NA intronic ENSMUSG00000042078 NA NA 5qF NA NA chr5 114510154 ACAxGGT C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.691234 0.693668 0.99649 54 4 0 31.27855 0.4 0.02 -0.2623 18 12 407 343 60 60 0 0 CC 4.501396 15 0 345 0 KEEP - Svop NO AA_1 chr5 118445562 118445562 A T intronic Fbxo21 NA NA intronic Fbxo21 NA NA intronic ENSMUSG00000032898 NA NA 5qF NA NA chr5 118445562 CGTxGCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.549786 0.552887 0.994391 41 0 0 33.959196 0.52 0.02 -0.218975 12 13 341 353 60 60 0 0 AA 3.910244 13 0 362 0 KEEP + Fbxo21 YES AA_1 chr5 120124292 120124292 A T exonic Tbx3 nonsynonymous SNV NM_011535:c.A647T:p.K216I exonic Tbx3 nonsynonymous SNV uc008zgu.1:c.A647T:p.K216I exonic ENSMUSG00000018604 nonsynonymous SNV ENSMUST00000018748:c.A647T:p.K216I 5qF NA NA chr5 120124292 ATAxACA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 61 2 0 8.923434 0.307692 0.02 -0.113991 9 4 255 105 60 60 0 0 AA 11.73027 39 0 1078 0 KEEP + Tbx3 YES AA_1 chr5 122327051 122327051 C T exonic Cux2 nonsynonymous SNV NM_007804:c.G787A:p.E263K exonic Cux2 nonsynonymous SNV uc008zkm.1:c.G787A:p.E263K exonic ENSMUSG00000042589 nonsynonymous SNV ENSMUST00000166670:c.G787A:p.E263K 5qF NA NA chr5 122327051 GCTxCTG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 43 0 0 21.510516 0.470588 0.02 -0.149089 9 8 265 228 60 60 0 0 CC 5.113824 17 0 482 0 KEEP - Cux2 NO AA_1 chr5 123131030 123131030 A C exonic P2rx7 nonsynonymous SNV NM_001284402:c.A1496C:p.K499T exonic P2rx7 nonsynonymous SNV uc008zlq.1:c.A1505C:p.K502T exonic ENSMUSG00000029468 nonsynonymous SNV ENSMUST00000100737:c.A1505C:p.K502T 5qF NA NA chr5 123131030 GGAxGCC A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 122 5 0 9.951814 0.084507 0.02 1.171216 65 6 1837 160 60 60 0 0 AA 11.426207 38 0 1038 0 KEEP + P2rx7 NO AA_1 chr5 124080425 124080425 C A exonic Clip1 stopgain SNV NM_019765:c.G2119T:p.E707X exonic Clip1 stopgain SNV uc008zoa.1:c.G2119T:p.E707X exonic ENSMUSG00000049550 stopgain SNV ENSMUST00000111566:c.G2119T:p.E707X 5qF NA NA chr5 124080425 GTTxAGT C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 167 0 0 8.707404 0.072464 0.02 1.090146 64 5 1895 141 60 60 0 0 CC 23.464432 78 0 2237 0 KEEP - Clip1 NO AA_1 chr5 125368381 125368381 G C UTR3 Zfp664 NA NA UTR3 Zfp664 NA NA UTR3 ENSMUSG00000079215 NA NA 5qF NA NA chr5 125368381 GAAxCCT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 95 0 0 15.458992 0.184211 0.02 -0.342062 31 7 938 200 60 60 0 0 GG 13.233436 44 0 1236 0 KEEP + Zfp664 NO AA_1 chr5 135378889 135378889 A T intronic Wbscr28 NA NA intronic Wbscr28 NA NA intronic ENSMUSG00000040576 NA NA 5qG2 NA NA chr5 135378889 TGTxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 46 0 0 50.012189 0.708333 0.02 -0.210473 7 17 208 482 60 60 0 0 AA 5.714804 19 0 526 0 KEEP - Wbscr28 YES AA_1 chr5 135410203 135410203 C G exonic Wbscr27 nonsynonymous SNV NM_024479:c.C297G:p.S99R exonic Wbscr27 nonsynonymous SNV uc008zwz.1:c.C297G:p.S99R exonic ENSMUSG00000040557 nonsynonymous SNV ENSMUST00000136246:c.C297G:p.S99R 5qG2 NA NA chr5 135410203 AAGxCCA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999724 0.999726 0.999998 132 0 0 31.512914 0.174419 0.02 1.031387 71 15 2051 416 60 60 0 0 CC 8.130253 31 2 813 10 KEEP + Wbscr27 NO AA_1 chr5 136204471 136204471 T C intronic Por NA NA intronic Por NA NA intronic ENSMUSG00000005514 NA NA 5qG2 NA NA chr5 136204471 GGGxCGC T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 152 1 0 11.96101 0.097222 0.02 1.163069 65 7 1728 185 60 60 0 0 TT 18.627368 62 0 1617 0 KEEP + Por NO AA_1 chr5 137547068 137547068 T A exonic Serpine1 nonsynonymous SNV NM_008871:c.A106T:p.T36S exonic Serpine1 nonsynonymous SNV uc009abn.2:c.A106T:p.T36S exonic ENSMUSG00000037411 nonsynonymous SNV ENSMUST00000041388:c.A106T:p.T36S 5qG2 NA NA chr5 137547068 CGGxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926556 0.92664 0.999909 82 4 0 37.496491 0.340909 0.02 -0.394584 29 15 800 426 60 60 0 0 TT 7.201926 24 0 632 0 KEEP - Serpine1 YES AA_1 chr5 137731571 137731571 G A exonic Ache nonsynonymous SNV NM_009599:c.G310A:p.V104M exonic Ache nonsynonymous SNV uc009abw.1:c.G310A:p.V104M exonic ENSMUSG00000023328 nonsynonymous SNV ENSMUST00000024099:c.G310A:p.V104M 5qG2 NA NA chr5 137731571 TACxTGG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 180 2 0 67.772363 0.329412 0.02 0.950209 57 28 1455 778 60 60 0 0 GG 21.631803 72 0 1771 0 KEEP + Ache NO AA_1 chr5 138263471 138263471 C T exonic Zcwpw1 nonsynonymous SNV NM_001005426:c.C1669T:p.P557S exonic Zcwpw1 nonsynonymous SNV uc009adz.2:c.C1669T:p.P557S exonic ENSMUSG00000037108 nonsynonymous SNV ENSMUST00000035852:c.C1669T:p.P557S 5qG2 NA NA chr5 138263471 TGCxCTA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 84 3 0 55.774656 0.59375 0.02 -0.280646 13 19 376 561 60 60 0 0 CC 11.428815 38 0 1048 0 KEEP + Zcwpw1 NO AA_1 chr5 138643435 138643435 G T intergenic "Mblac1(dist=6586),Nxpe5(dist=23697)" NA NA intergenic "Mblac1(dist=6807),BC055004(dist=23697)" NA NA intergenic "ENSMUSG00000049285(dist=6807),ENSMUSG00000089783(dist=1402)" NA NA 5qG2 "Score=0.937935;Name=No.91015,chr5:138678884" NA chr5 138643435 TCAxCCA G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 121 0 18 9.189848 0.098039 0.02 1.239181 46 5 1352 139 60 36 0 0 GG 17.432508 58 0 1645 0 KEEP NA Mblac1 NO AA_1 chr5 142952857 142952857 G C exonic Ap5z1 nonsynonymous SNV NM_172725:c.G1945C:p.A649P exonic C330006K01Rik nonsynonymous SNV uc012ege.1:c.G1711C:p.A571P exonic ENSMUSG00000039623 nonsynonymous SNV ENSMUST00000110792:c.G1393C:p.A465P 5qG2 NA NA chr5 142952857 TGGxCCA G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999992 0.999997 159 1 0 38.601825 0.157407 0.02 3.035111 91 17 2641 509 60 60 0 0 GG 9.618286 32 0 863 0 KEEP + Ap5z1 NO AA_1 chr5 144324556 144324556 A T UTR3 Fam220a NA NA UTR3 2810453I06Rik NA NA UTR3 "ENSMUSG00000048910,ENSMUSG00000083012" NA NA 5qG2 "Score=0.957835;Name=No.93340,chrX:72388945" NA chr5 144324556 TGCxTTA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 371 1 2 143.600739 0.473214 0.02 2.605327 59 53 1633 1520 60 60 0 0 AA 60.133632 200 0 5418 0 KEEP + Fam220a YES AA_1 chr5 144484023 144484023 T A exonic Usp42 nonsynonymous SNV NM_029749:c.A608T:p.Y203F exonic Usp42 nonsynonymous SNV uc009akp.1:c.A608T:p.Y203F exonic ENSMUSG00000051306 nonsynonymous SNV ENSMUST00000053287:c.A608T:p.Y203F 5qG2 NA NA chr5 144484023 GTGxACT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 108 2 0 26.596407 0.268293 0.02 -0.359475 30 11 804 317 60 60 0 0 TT 13.532376 45 0 1208 0 KEEP - Usp42 YES AA_1 chr5 144686375 144686375 G C exonic Pms2 nonsynonymous SNV NM_008886:c.G1430C:p.S477T exonic Pms2 nonsynonymous SNV uc009akz.1:c.G1430C:p.S477T exonic ENSMUSG00000079109 nonsynonymous SNV ENSMUST00000148011:c.G1430C:p.S477T 5qG2 NA NA chr5 144686375 TGAxTCC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 106 0 0 18.979641 0.176471 0.02 1.445004 42 9 1180 250 60 60 0 0 GG 14.113601 47 0 1271 0 KEEP + Pms2 NO AA_1 chr5 144909132 144909132 T G intronic Lmtk2 NA NA intronic Lmtk2 NA NA intronic ENSMUSG00000038970 NA NA 5qG2 NA NA chr5 144909132 GTCxTTT T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 194 0 0 90.128684 0.506329 0.02 1.003158 39 40 1130 949 60 60 0 0 TT 24.364764 81 0 2274 0 KEEP + Lmtk2 NO AA_1 chr5 14712524 14712524 C T exonic Pclo synonymous SNV NM_001110796:c.C11010T:p.T3670T exonic Pclo synonymous SNV uc008wmj.2:c.C2118T:p.T706T exonic ENSMUSG00000061601 synonymous SNV ENSMUST00000030691:c.C11010T:p.T3670T 5qA1 NA NA chr5 14712524 CACxATG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 224 0 0 55.929163 0.4375 0.02 -0.420972 27 21 805 602 60 60 0 0 CC 40.592876 135 0 3807 0 KEEP + Pclo NO AA_1 chr5 152375481 152375481 A T exonic Vmn2r18 nonsynonymous SNV NM_001102582:c.T1346A:p.V449E exonic Vmn2r18 nonsynonymous SNV uc009vdq.1:c.T1346A:p.V449E exonic ENSMUSG00000091794 nonsynonymous SNV ENSMUST00000165928:c.T1346A:p.V449E 5qG3 NA NA chr5 152375481 CATxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 101 4 0 30.93137 0.375 0.02 -0.28061 20 12 550 344 60 60 0 0 AA 12.86183 52 1 1389 26 KEEP - Vmn2r18 YES AA_1 chr5 20279902 20279902 G C exonic Phtf2 synonymous SNV NM_172992:c.C1545G:p.V515V exonic Phtf2 synonymous SNV uc008wnz.2:c.C1545G:p.V515V exonic ENSMUSG00000039987 synonymous SNV ENSMUST00000153194:c.C30G:p.V10V 5qA3 NA NA chr5 20279902 CAGxACC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229145 0.229173 0.999879 44 0 0 26.628711 0.642857 0.02 -0.131559 5 9 151 263 60 60 0 0 GG 6.611018 22 0 603 0 KEEP - Phtf2 NO AA_1 chr5 23889244 23889244 A T intronic Nos3 NA NA ncRNA_intronic AK138592 NA NA ncRNA_intronic ENSMUSG00000086769 NA NA 5qA3 NA NA chr5 23889244 TGTxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 199 4 0 119.351012 0.429825 0.02 2.489993 65 49 1697 1298 60 60 0 0 AA 15.570439 52 0 1347 0 KEEP + Nos3 YES AA_1 chr5 23889258 23889258 A T intronic Nos3 NA NA ncRNA_intronic AK138592 NA NA ncRNA_intronic ENSMUSG00000086769 NA NA 5qA3 NA NA chr5 23889258 GACxAGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 194 3 0 156.204113 0.526316 0.02 2.785841 54 60 1461 1619 60 60 0 0 AA 15.918857 53 0 1416 0 KEEP + Nos3 YES AA_1 chr5 24043587 24043587 G C exonic Asb10 nonsynonymous SNV NM_080444:c.C965G:p.A322G exonic Asb10 nonsynonymous SNV uc008wry.1:c.C965G:p.A322G exonic ENSMUSG00000038204 nonsynonymous SNV ENSMUST00000048302:c.C965G:p.A322G 5qA3 NA NA chr5 24043587 ATGxCAT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 339 4 0 208.124267 0.405263 0.02 4.289465 113 77 3318 2271 60 60 0 0 GG 31.512656 105 0 2830 0 KEEP - Asb10 NO AA_1 chr5 24076991 24076991 T A exonic Abcf2 nonsynonymous SNV NM_001190443:c.A904T:p.M302L exonic Abcf2 nonsynonymous SNV uc008wsb.2:c.A907T:p.M303L exonic ENSMUSG00000028953 nonsynonymous SNV ENSMUST00000167722:c.A907T:p.M303L 5qA3 NA NA chr5 24076991 GCAxATG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 259 2 0 110.361527 0.465909 0.02 1.00446 47 41 1240 1172 60 60 0 0 TT 33.94778 113 0 3017 0 KEEP - Abcf2 YES AA_1 chr5 26402123 26402123 G A intronic Gm21671 NA NA intergenic "Speer4a(dist=36078),Gm10471(dist=6589)" NA NA intergenic "ENSMUSG00000073117(dist=17002),ENSMUSG00000073116(dist=6589)" NA NA 5qB1 "Score=0.958652;Name=No.90497,chr5:26366487" NA chr5 26402123 AGCxGGG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 284 3 14 22.200332 0.272727 0.02 -0.289263 24 9 611 263 60 60 0 0 GG 70.637566 235 0 6141 0 KEEP NA Gm21671 NO AA_1 chr5 26430695 26430695 T C exonic 5031410I06Rik nonsynonymous SNV NM_207657:c.A148G:p.R50G exonic 5031410I06Rik nonsynonymous SNV uc008wtf.1:c.A148G:p.R50G exonic ENSMUSG00000051940 nonsynonymous SNV ENSMUST00000063524:c.A148G:p.R50G 5qB1 "Score=0.971388;Name=No.90508,chr5:26432699" NA chr5 26430695 GTCxGTG T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1176 20 256 11.966937 0.052381 0.02 3.966638 199 11 5595 253 60 20 0 0 TT 220.083917 732 0 19941 0 KEEP - 5031410I06Rik NO AA_1 chr5 28050005 28050005 A T intronic Dpp6 NA NA intronic Dpp6 NA NA intronic ENSMUSG00000061576 NA NA 5qB1 NA NA chr5 28050005 CACxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 87 2 0 73.194436 0.54 0.02 -0.438372 23 27 641 753 60 60 0 0 AA 9.625126 32 0 889 0 KEEP + Dpp6 YES AA_1 chr5 35422414 35422414 C G intronic Dok7 NA NA exonic Dok7 nonsynonymous SNV uc008xdn.1:c.C934G:p.P312A exonic ENSMUSG00000044716 nonsynonymous SNV ENSMUST00000101298:c.C1075G:p.P359A 5qB2 NA NA chr5 35422414 CCCxCTC C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 177 0 0 47.850416 0.283784 0.02 1.225766 53 21 1570 570 60 60 0 0 CC 22.217566 74 0 2000 0 KEEP + Dok7 NO AA_1 chr5 45923066 45923066 A T exonic Fam184b nonsynonymous SNV NM_021416:c.T2666A:p.L889Q exonic Fam184b nonsynonymous SNV uc008xja.2:c.T2666A:p.L889Q exonic ENSMUSG00000015879 nonsynonymous SNV ENSMUST00000016023:c.T2666A:p.L889Q 5qB3 NA NA chr5 45923066 TCCxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 84 5 0 40.630286 0.390244 0.02 -0.367949 25 16 703 449 60 60 0 0 AA 8.717846 29 0 787 0 KEEP - Fam184b YES AA_1 chr5 54747500 54747500 A T ncRNA_exonic Gm10440 NA NA intergenic "Stim2(dist=235204),NONE(dist=NONE)" NA NA intergenic "ENSMUSG00000089535(dist=66003),ENSMUSG00000077507(dist=470954)" NA NA 5qC1 NA NA chr5 54747500 TTCxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 86 1 0 32.168281 0.444444 0.02 -0.245553 15 12 432 345 60 60 0 0 AA 15.34038 51 0 1423 0 KEEP NA Gm10440 YES AA_1 chr5 58112210 58112210 A T exonic Pcdh7 nonsynonymous SNV NM_001122758:c.A1867T:p.T623S exonic Pcdh7 nonsynonymous SNV uc008xlt.2:c.A1867T:p.T623S exonic ENSMUSG00000029108 nonsynonymous SNV ENSMUST00000068110:c.A1867T:p.T623S 5qC1 NA NA chr5 58112210 AGCxCCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522139 0.522161 0.999957 54 0 0 40.398381 0.583333 0.02 -0.210466 10 14 274 408 60 60 0 0 AA 7.819072 26 0 701 0 KEEP + Pcdh7 YES AA_1 chr5 66418337 66418337 T G exonic Rbm47 nonsynonymous SNV NM_139065:c.A161C:p.K54T exonic Rbm47 nonsynonymous SNV uc008xok.2:c.A161C:p.K54T exonic ENSMUSG00000070780 nonsynonymous SNV ENSMUST00000113724:c.A161C:p.K54T 5qC3.1 NA NA chr5 66418337 TACxTGC T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990962 0.990964 0.999997 108 0 0 42.225161 0.305085 0.02 1.24991 41 18 1180 494 60 60 0 0 TT 9.621659 32 0 868 0 KEEP - Rbm47 NO AA_1 chr5 77773926 77773926 A C exonic Polr2b nonsynonymous SNV NM_153798:c.A3074C:p.N1025T exonic Polr2b nonsynonymous SNV uc008xwe.2:c.A3074C:p.N1025T exonic "ENSMUSG00000029250,ENSMUSG00000092531" nonsynonymous SNV ENSMUST00000031167:c.A3074C:p.N1025T 5qC3.3 NA NA chr5 77773926 GGAxCGA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 53 0 0 25.474733 0.5 0.02 -0.157856 9 9 251 266 60 60 0 0 AA 9.32208 31 0 828 0 KEEP + Polr2b NO AA_1 chr5 87683312 87683312 C T exonic Ugt2b37 nonsynonymous SNV NM_053215:c.G484A:p.A162T exonic Ugt2b37 nonsynonymous SNV uc008xyg.1:c.G484A:p.A162T exonic ENSMUSG00000057425 nonsynonymous SNV ENSMUST00000075858:c.G484A:p.A162T 5qE1 "Score=0.893646;Name=No.90587,chr5:87556671" NA chr5 87683312 CAGxGAT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 82 2 0 23.944964 0.8 0.02 -0.096435 2 8 49 223 60 60 0 0 CC 18.032467 60 0 1527 0 KEEP - Ugt2b37 NO AA_1 chr5 88096316 88096316 T A exonic Csn1s1 unknown UNKNOWN exonic Csn1s1 synonymous SNV uc008xyq.1:c.T45A:p.A15A exonic ENSMUSG00000070702 synonymous SNV ENSMUST00000094641:c.T45A:p.A15A 5qE1 NA NA chr5 88096316 TGCxATG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 164 5 0 62.09146 0.564103 0.02 -0.342005 17 22 479 632 60 60 0 0 TT 28.26898 94 0 2558 0 KEEP + Csn1s1 YES AA_1 chr5 8920462 8920462 T A splicing Abcb4(NM_008830:exon12:c.1347+2T>A) NA NA splicing "Abcb4(uc008wkr.2:exon12:c.1347+2T>A,uc008wks.1:exon11:c.1347+2T>A)" NA NA splicing ENSMUSG00000042476(ENSMUST00000003717:exon12:c.1347+2T>A) NA NA 5qA1 NA NA chr5 8920462 AGGxAAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 66 0 0 18.638207 0.411765 0.02 -0.157834 10 7 268 203 60 60 0 0 TT 10.515616 35 0 907 0 KEEP + Abcb4 YES AA_1 chr5 90897562 90897562 A T exonic Alb nonsynonymous SNV NM_009654:c.A899T:p.Q300L exonic Alb nonsynonymous SNV uc008yaz.2:c.A899T:p.Q300L exonic ENSMUSG00000029368 nonsynonymous SNV ENSMUST00000031314:c.A899T:p.Q300L 5qE1 NA NA chr5 90897562 TGCxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 164 6 0 79.057787 0.56 0.02 1.444942 22 28 623 806 60 60 0 0 AA 24.951008 83 0 2275 0 KEEP + Alb YES AA_1 chr5 93821775 93821775 A T intergenic "Ccng2(dist=116518),C87414(dist=242436)" NA NA intergenic "Ccng2(dist=116518),C87414(dist=242436)" NA NA ncRNA_exonic ENSMUSG00000053208 NA NA 5qE2 NA NA chr5 93821775 GAGxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 77 0 0 32.642635 0.419355 0.02 -0.271841 18 13 522 356 60 60 0 0 AA 9.887637 33 0 881 0 KEEP NA Ccng2 YES AA_1 chr6 104796183 104796183 A T intronic Cntn6 NA NA intronic Cntn6 NA NA intronic ENSMUSG00000030092 NA NA 6qE1 NA NA chr6 104796183 TGCxCAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043759 0.043787 0.999366 27 1 0 15.09519 0.714286 0.02 -0.061139 2 5 39 145 60 60 0 0 AA 5.112755 17 0 462 0 KEEP + Cntn6 YES AA_1 chr6 113244807 113244807 A T intronic Cpne9 NA NA intronic Cpne9 NA NA intronic ENSMUSG00000030270 NA NA 6qE3 NA NA chr6 113244807 GACxTGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717214 0.717315 0.999859 56 0 0 60.847487 0.677419 0.02 -0.271816 10 21 269 593 60 60 0 0 AA 5.413251 18 0 487 0 KEEP + Cpne9 YES AA_1 chr6 113444754 113444754 A T exonic Prrt3 stopgain SNV NM_172487:c.T2447A:p.L816X exonic Prrt3 stopgain SNV uc009dgp.1:c.T2447A:p.L816X exonic ENSMUSG00000045009 stopgain SNV ENSMUST00000101059:c.T2447A:p.L816X 6qE3 NA NA chr6 113444754 ACCxAGT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 95 0 0 68.471757 0.676471 0.02 -0.298164 11 23 311 668 60 60 0 0 AA 12.612447 42 0 1140 0 KEEP - Prrt3 YES AA_1 chr6 113547853 113547853 G C exonic Fancd2os nonsynonymous SNV NM_027633:c.C185G:p.P62R exonic 4931417G12Rik nonsynonymous SNV uc009dgy.2:c.C185G:p.P62R exonic ENSMUSG00000033963 nonsynonymous SNV ENSMUST00000035870:c.C185G:p.P62R 6qE3 NA NA chr6 113547853 AGTxGTC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 107 0 0 6.681031 0.085106 0.02 -0.412015 43 4 1248 107 60 60 0 0 GG 13.893211 50 1 1397 10 KEEP - Fancd2os NO AA_1 chr6 118334227 118334227 C T intronic Bms1 NA NA intronic Bms1 NA NA intronic ENSMUSG00000030138 NA NA 6qF1 NA NA chr6 118334227 ATGxAAA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099658 0.099721 0.999366 35 0 0 32.563921 1 0.02 -0.08769 0 10 0 278 0 60 0 0 CC 5.113794 17 0 481 0 KEEP - Bms1 NO AA_1 chr6 125324941 125324941 A T intronic Plekhg6 NA NA intronic Plekhg6 NA NA intronic ENSMUSG00000038167 NA NA 6qF3 NA NA chr6 125324941 TGTxCGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 144 2 0 120.541284 0.636364 0.02 1.214785 24 42 648 1193 60 60 0 0 AA 15.574303 52 0 1355 0 KEEP - Plekhg6 YES AA_1 chr6 125581168 125581168 G A exonic Vwf synonymous SNV NM_011708:c.G2874A:p.S958S exonic Vwf synonymous SNV uc009dut.1:c.G693A:p.S231S exonic ENSMUSG00000001930 synonymous SNV ENSMUST00000001995:c.G2874A:p.S958S 6qF3 NA NA chr6 125581168 GTCxGGC G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 171 0 0 57.246199 0.302632 0.02 1.217214 53 23 1414 665 60 60 0 0 GG 21.932944 73 0 1841 0 KEEP + Vwf NO AA_1 chr6 135873374 135873374 A G exonic Grin2b nonsynonymous SNV NM_008171:c.T526C:p.F176L exonic Grin2b nonsynonymous SNV uc009elq.1:c.T526C:p.F176L exonic ENSMUSG00000030209 nonsynonymous SNV ENSMUST00000053880:c.T526C:p.F176L 6qG1 NA NA chr6 135873374 GGAxGTA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076902 0.077336 0.994391 26 0 0 7.44328 0.333333 0.02 -0.07892 6 3 170 85 60 60 0 0 AA 3.909915 13 0 360 0 KEEP - Grin2b NO AA_1 chr6 136349768 136349768 C T downstream E330021D16Rik NA NA downstream LOC100502936 NA NA downstream ENSMUSG00000045291 NA NA 6qG1 "Score=0.962016;Name=No.94952,chr8:125944505" NA chr6 136349768 CTGxGGA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 91 1 0 57.246284 0.666667 0.02 -0.271794 10 20 257 560 60 60 0 0 CC 14.70029 49 0 1159 0 KEEP NA E330021D16Rik NO AA_1 chr6 142633580 142633580 A T exonic Abcc9 synonymous SNV NM_001044720:c.T939A:p.A313A exonic Abcc9 synonymous SNV uc009epm.1:c.T939A:p.A313A exonic ENSMUSG00000030249 synonymous SNV ENSMUST00000073173:c.T939A:p.A313A 6qG2 NA NA chr6 142633580 ACCxGCA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019911 0.019982 0.99649 23 0 0 9.353776 0.75 0.02 -0.035082 1 3 29 89 60 60 0 0 AA 4.508816 15 0 402 0 KEEP - Abcc9 YES AA_1 chr6 23919736 23919736 A T exonic Tas2r118 nonsynonymous SNV NM_207022:c.T325A:p.S109T exonic Tas2r118 nonsynonymous SNV uc009bbn.1:c.T325A:p.S109T exonic ENSMUSG00000043865 nonsynonymous SNV ENSMUST00000062463:c.T325A:p.S109T 6qA3.1 NA NA chr6 23919736 AGGxAGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 103 2 0 38.037562 0.625 0.02 -0.210294 9 15 253 378 60 60 0 0 AA 19.551225 65 0 1811 0 KEEP - Tas2r118 YES AA_1 chr6 28371148 28371148 T A exonic Gcc1 stopgain SNV NM_028900:c.A169T:p.K57X exonic Gcc1 stopgain SNV uc009bco.2:c.A169T:p.K57X exonic ENSMUSG00000029708 stopgain SNV ENSMUST00000090511:c.A169T:p.K57X 6qA3.3 NA NA chr6 28371148 CCTxGAT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 201 0 0 102.358621 0.443182 0.02 1.120542 49 39 1382 1100 60 60 0 0 TT 26.466131 88 0 2411 0 KEEP - Gcc1 YES AA_1 chr6 28394421 28394421 G T intronic Pax4 NA NA intronic Pax4 NA NA intronic ENSMUSG00000029706 NA NA 6qA3.3 NA NA chr6 28394421 AACxGGG G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 139 0 0 15.051878 0.14 0.02 1.444978 43 7 1236 205 60 60 0 0 GG 19.541955 65 0 1734 0 KEEP - Pax4 NO AA_1 chr6 39473542 39473542 T A exonic Dennd2a nonsynonymous SNV NM_172477:c.A87T:p.R29S exonic Dennd2a nonsynonymous SNV uc009blx.1:c.A87T:p.R29S exonic ENSMUSG00000038456 nonsynonymous SNV ENSMUST00000036877:c.A87T:p.R29S 6qB1 NA NA chr6 39473542 GGGxCTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 191 0 0 155.269062 0.526786 0.02 2.50701 53 59 1451 1608 60 60 0 0 TT 14.266833 53 1 1421 15 KEEP - Dennd2a YES AA_1 chr6 41988456 41988456 A T exonic Sva synonymous SNV NM_009299:c.A36T:p.A12A exonic Sva synonymous SNV uc009bql.2:c.A36T:p.A12A exonic ENSMUSG00000023289 synonymous SNV ENSMUST00000024059:c.A36T:p.A12A 6qB2.1 NA NA chr6 41988456 AGCxGTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 94 2 0 30.349196 0.4 0.02 -0.271702 18 12 509 334 60 60 0 0 AA 13.232988 44 0 1213 0 KEEP + Sva YES AA_1 chr6 42628621 42628621 C G exonic Fam115a synonymous SNV NM_029930:c.G1419C:p.R473R exonic Fam115a synonymous SNV uc009bro.1:c.G1419C:p.R473R exonic ENSMUSG00000036667 synonymous SNV ENSMUST00000045054:c.G1419C:p.R473R 6qB2.1 NA NA chr6 42628621 AAGxCGA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993634 0.993703 0.999931 104 1 0 113.016291 0.6 0.02 1.421292 26 39 750 1134 60 60 0 0 CC 7.514286 25 0 687 0 KEEP - Fam115a NO AA_1 chr6 4468841 4468841 A T exonic Col1a2 synonymous SNV NM_007743:c.A708T:p.P236P exonic Col1a2 synonymous SNV uc009avm.1:c.A708T:p.P236P exonic ENSMUSG00000029661 synonymous SNV ENSMUST00000169615:c.A405T:p.P135P 6qA1 NA NA chr6 4468841 TCCxGCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 121 2 0 49.750226 0.38 0.02 1.436381 31 19 859 551 60 60 0 0 AA 17.14118 57 0 1544 0 KEEP + Col1a2 YES AA_1 chr6 48520298 48520298 T C exonic Rarres2 nonsynonymous SNV NM_027852:c.A326G:p.K109R exonic Rarres2 nonsynonymous SNV uc009but.1:c.A326G:p.K109R exonic ENSMUSG00000009281 nonsynonymous SNV ENSMUST00000009425:c.A326G:p.K109R 6qB2.3 NA NA chr6 48520298 CCCxTGG T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 166 4 0 25.408613 0.15942 0.02 1.386061 58 11 1652 333 60 60 0 0 TT 22.257437 74 0 2050 0 KEEP + Rarres2 NO AA_1 chr6 48880715 48880715 T A exonic 1600015I10Rik nonsynonymous SNV NM_001081273:c.T649A:p.Y217N exonic 1600015I10Rik nonsynonymous SNV uc012elm.1:c.T649A:p.Y217N exonic ENSMUSG00000029813 nonsynonymous SNV ENSMUST00000031837:c.T649A:p.Y217N 6qB2.3 NA NA chr6 48880715 CGCxATA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 228 3 0 59.568101 0.337838 0.02 1.046871 49 25 1345 682 60 60 1 0 TT 35.785204 119 0 3234 0 KEEP + 1600015I10Rik YES AA_1 chr6 48938510 48938510 G A exonic Svs1 stopgain SNV NM_172888:c.G1452A:p.W484X exonic Svs1 stopgain SNV uc009bwe.2:c.G1452A:p.W484X exonic ENSMUSG00000039215 stopgain SNV ENSMUST00000037696:c.G1452A:p.W484X 6qB2.3 NA NA chr6 48938510 CTGxGGC G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.967421 0.967425 0.999995 108 2 0 59.148837 0.431373 0.02 1.444917 29 22 855 638 60 60 0 0 GG 13.524753 45 0 1229 0 KEEP + Svs1 NO AA_1 chr6 67811567 67811567 T A intergenic "4930515G16Rik(dist=295874),Rprl1(dist=1465364)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076508 stopgain SNV ENSMUST00000103309:c.T255A:p.Y85X 6qC1 "Score=0.967711;Name=No.93771,chr6:67976701" NA chr6 67811567 CTAxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 90 0 2 21.400502 0.421053 0.02 -0.166611 11 8 303 232 60 60 0 0 TT 17.743835 59 0 1599 0 KEEP + 4930515G16Rik YES AA_1 chr6 69550373 69550373 T A intergenic "Rprl1(dist=273205),Rpia(dist=1165341)" NA NA ncRNA_intronic abParts NA NA intronic ENSMUSG00000079542 NA NA 6qC1 "Score=0.933312;Name=No.93917,chr6:69566953" NA chr6 69550373 TGCxATA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 61 0 0 13.192917 0.454545 0.02 -0.096469 6 5 176 141 60 60 0 0 TT 11.12872 37 0 1023 0 KEEP + Rprl1 YES AA_1 chr6 7635290 7635290 T A exonic Asns synonymous SNV NM_012055:c.A366T:p.A122A exonic Asns synonymous SNV uc009axf.1:c.A366T:p.A122A exonic ENSMUSG00000029752 synonymous SNV ENSMUST00000031766:c.A366T:p.A122A 6qA1 NA NA chr6 7635290 GAAxGCA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 75 0 0 40.93252 0.56 0.02 -0.236706 11 14 298 417 60 60 0 0 TT 11.127775 37 0 1006 0 KEEP - Asns YES AA_1 chr6 85430888 85430888 C T exonic Fbxo41 nonsynonymous SNV NM_001001160:c.G998A:p.R333H exonic Fbxo41 nonsynonymous SNV uc009cpx.1:c.G998A:p.R333H exonic ENSMUSG00000047013 nonsynonymous SNV ENSMUST00000159062:c.G998A:p.R333H 6qC3 NA NA chr6 85430888 GCAxGCT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 175 2 0 77.225013 0.33 0.02 0.819495 67 33 1689 890 60 60 0 0 CC 14.125206 47 0 1193 0 KEEP - Fbxo41 NO AA_1 chr6 91868096 91868096 T A exonic 4930590J08Rik synonymous SNV NM_198668:c.T777A:p.P259P exonic 4930590J08Rik synonymous SNV uc009cyl.1:c.T777A:p.P259P exonic ENSMUSG00000034063 synonymous SNV ENSMUST00000059318:c.T777A:p.P259P 6qD1 NA NA chr6 91868096 GCCxCAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 175 0 0 55.850045 0.396552 0.02 1.177905 35 23 1001 618 60 60 0 0 TT 27.057628 90 0 2448 0 KEEP + 4930590J08Rik YES AA_1 chr7 105692405 105692405 A T intergenic "Lrrc32(dist=42065),2210018M11Rik(dist=46711)" NA NA exonic A630091E08Rik nonsynonymous SNV uc009ikm.1:c.T152A:p.L51H exonic ENSMUSG00000055446 nonsynonymous SNV ENSMUST00000069035:c.T152A:p.L51H 7qE2 NA NA chr7 105692405 CCAxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 70 1 0 59.39391 0.647059 0.02 -0.298093 12 22 344 585 60 60 0 0 AA 9.023335 30 0 834 0 KEEP - Lrrc32 YES AA_1 chr7 107568169 107568169 A T exonic C2cd3 unknown UNKNOWN exonic C2cd3 nonsynonymous SNV uc009imy.1:c.A1304T:p.K435M exonic ENSMUSG00000047248 nonsynonymous SNV ENSMUST00000119647:c.A1304T:p.K435M 7qE3 NA NA chr7 107568169 CCAxGAT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 76 0 0 28.170549 0.625 0.02 -0.140308 6 10 171 280 60 60 0 0 AA 13.836469 46 0 1285 0 KEEP + C2cd3 YES AA_1 chr7 108977725 108977725 C A exonic Inppl1 synonymous SNV NM_001122739:c.G1797T:p.R599R exonic Inppl1 synonymous SNV uc009ipg.2:c.G1797T:p.R599R exonic ENSMUSG00000032737 synonymous SNV ENSMUST00000035836:c.G1797T:p.R599R 7qE3 NA NA chr7 108977725 GAAxCGC C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 56 0 0 11.769561 0.3125 0.02 -0.149091 11 5 329 137 60 60 0 0 CC 8.722334 29 0 801 0 KEEP - Inppl1 NO AA_1 chr7 111276731 111276731 G T exonic 4931431F19Rik synonymous SNV NM_027634:c.C1399A:p.R467R exonic 4931431F19Rik synonymous SNV uc012frf.1:c.C1399A:p.R467R exonic ENSMUSG00000055643 synonymous SNV ENSMUST00000053743:c.C1399A:p.R467R 7qE3 NA NA chr7 111276731 ACCxACC G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 71 0 0 36.927202 0.56 0.02 -0.245247 11 14 279 377 60 60 0 0 GG 10.513767 35 0 885 0 KEEP - 4931431F19Rik NO AA_1 chr7 111289770 111289770 G A exonic Ubqln3 synonymous SNV NM_198623:c.C1626T:p.P542P exonic Ubqln3 synonymous SNV uc009ivk.1:c.C1626T:p.P542P exonic ENSMUSG00000051618 synonymous SNV ENSMUST00000057254:c.C1626T:p.P542P 7qE3 NA NA chr7 111289770 GCGxGGT G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120175 0.120436 0.997832 27 0 0 16.768981 0.545455 0.02 -0.096471 5 6 152 172 60 60 0 0 GG 4.79731 16 0 432 0 KEEP - Ubqln3 NO AA_1 chr7 111919046 111919046 A T intronic Usp17le NA NA intergenic "Olfr663(dist=65929),Dub1a(dist=69725)" NA NA intronic ENSMUSG00000043073 NA NA 7qE3 "Score=0.938966;Name=No.101579,chr7:111923048" NA chr7 111919046 ACAxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 158 0 0 54.418187 0.791667 0.02 -0.227968 5 19 145 507 60 60 0 0 AA 32.183456 107 0 2980 0 KEEP NA Usp17le YES AA_1 chr7 112305435 112305435 T A exonic Olfr684 nonsynonymous SNV NM_207249:c.A760T:p.S254C exonic Olfr684 nonsynonymous SNV uc009ixq.1:c.A760T:p.S254C exonic ENSMUSG00000047225 nonsynonymous SNV ENSMUST00000060893:c.A760T:p.S254C 7qE3 NA NA chr7 112305435 TGCxGAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.4905 0.490544 0.999909 53 0 0 34.209729 0.521739 0.02 -0.20171 11 12 314 354 60 60 0 0 TT 7.218191 24 0 656 0 KEEP - Olfr684 YES AA_1 chr7 112881884 112881884 G C exonic Rrp8 synonymous SNV NM_025897:c.C1236G:p.G412G exonic Rrp8 synonymous SNV uc009iyz.2:c.C1236G:p.G412G exonic ENSMUSG00000030888 synonymous SNV ENSMUST00000033179:c.C1236G:p.G412G 7qE3 NA NA chr7 112881884 AAAxCCG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 79 0 0 7.33234 0.272727 0.02 -0.09648 8 3 244 87 60 60 0 0 GG 17.146781 57 0 1626 0 KEEP - Rrp8 NO AA_1 chr7 112906396 112906396 T A exonic Dchs1 nonsynonymous SNV NM_001162943:c.A6503T:p.H2168L exonic Dchs1 nonsynonymous SNV uc009izh.2:c.A6503T:p.H2168L exonic ENSMUSG00000036862 nonsynonymous SNV ENSMUST00000078482:c.A6503T:p.H2168L 7qE3 NA NA chr7 112906396 TAGxGAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 156 0 0 82.279526 0.54717 0.02 1.418626 24 29 669 843 60 60 0 0 TT 27.065046 90 0 2420 0 KEEP - Dchs1 YES AA_1 chr7 114290847 114290847 C T exonic Olfr716 stopgain SNV NM_146604:c.C16T:p.Q6X exonic Olfr716 stopgain SNV uc009jaw.1:c.C16T:p.Q6X exonic ENSMUSG00000073896 stopgain SNV ENSMUST00000098137:c.C16T:p.Q6X 7qE3 NA NA chr7 114290847 AACxAGA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP UNCOVERED 0.043787 0.043787 0.999998 60 0 0 19.514474 0.857143 0.02 -0.061395 1 6 29 179 60 60 0 0 CC 14.137753 47 0 1322 0 KEEP + Olfr716 NO AA_1 chr7 115046630 115046630 C A exonic Olfr472 stopgain SNV NM_146774:c.C398A:p.S133X exonic Olfr472 stopgain SNV uc009jbo.1:c.C398A:p.S133X exonic ENSMUSG00000073893 stopgain SNV ENSMUST00000084760:c.C398A:p.S133X 7qE3 NA NA chr7 115046630 ATTxAAC C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 182 2 0 9.846178 0.125 0.02 -0.350794 35 5 1031 140 60 60 0 0 CC 33.692823 112 0 3213 0 KEEP + Olfr472 NO AA_1 chr7 118186956 118186956 A T exonic Ctr9 nonsynonymous SNV NM_009431:c.A1220T:p.Q407L exonic Ctr9 nonsynonymous SNV uc009jfw.1:c.A1220T:p.Q407L exonic ENSMUSG00000005609 nonsynonymous SNV ENSMUST00000005749:c.A1220T:p.Q407L 7qF1 NA NA chr7 118186956 AACxGTA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 56 0 0 17.706073 0.75 0.02 -0.070157 2 6 60 168 60 60 0 0 AA 11.126813 37 0 1009 0 KEEP + Ctr9 YES AA_1 chr7 119464067 119464067 A T intronic Mical2 NA NA intronic Mical2 NA NA intronic ENSMUSG00000038244 NA NA 7qF1 NA NA chr7 119464067 GCAxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043781 0.043787 0.999863 29 0 0 9.30496 0.571429 0.02 -0.061137 3 4 87 95 60 60 0 0 AA 6.015859 20 0 559 0 KEEP + Mical2 YES AA_1 chr7 119718898 119718898 A T intronic Parva NA NA intronic Parva NA NA intronic ENSMUSG00000030770 NA NA 7qF1 NA NA chr7 119718898 GTCxTGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 146 0 0 21.76018 0.321429 0.02 -0.254151 19 9 512 251 60 60 0 0 AA 26.16411 87 0 2353 0 KEEP + Parva YES AA_1 chr7 126862717 126862717 T G exonic Thumpd1 synonymous SNV NM_145585:c.A330C:p.T110T exonic Thumpd1 synonymous SNV uc009jlo.1:c.A330C:p.T110T exonic ENSMUSG00000030942 synonymous SNV ENSMUST00000033236:c.A330C:p.T110T 7qF2 NA NA chr7 126862717 CTCxGTA T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 68 0 0 29.600473 0.392857 0.02 -0.245549 17 11 479 325 60 60 0 0 TT 10.526865 35 0 962 0 KEEP - Thumpd1 NO AA_1 chr7 129210810 129210810 G C exonic Ubfd1 nonsynonymous SNV NM_138589:c.G14C:p.G5A exonic Ubfd1 nonsynonymous SNV uc009jof.1:c.G14C:p.G5A exonic ENSMUSG00000030870 nonsynonymous SNV ENSMUST00000033158:c.G14C:p.G5A 7qF3 NA NA chr7 129210810 GTGxCAG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 53 2 0 7.601195 0.25 0.02 -0.149104 9 3 270 91 60 60 0 0 GG 7.82012 26 0 719 0 KEEP + Ubfd1 NO AA_1 chr7 135274680 135274680 C G intronic Itgax NA NA intronic Itgax NA NA intronic ENSMUSG00000030789 NA NA 7qF3 NA NA chr7 135274680 TATxTTC C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 133 0 0 35.264863 0.27451 0.02 1.642976 37 14 1082 416 60 60 0 0 CC 20.755495 69 0 1958 0 KEEP + Itgax NO AA_1 chr7 146767609 146767609 C T intronic Nkx6-2 NA NA ncRNA_intronic Nkx6-2 NA NA intronic ENSMUSG00000041309 NA NA 7qF4 NA NA chr7 146767609 GATxATC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 151 4 0 43.277098 0.339286 0.02 1.29381 37 19 1145 498 60 60 0 0 CC 20.148272 67 0 1913 0 KEEP - Nkx6-2 NO AA_1 chr7 148034707 148034707 C T exonic Odf3 nonsynonymous SNV NM_027019:c.C307T:p.P103S exonic Odf3 nonsynonymous SNV uc009kih.1:c.C307T:p.P103S exonic ENSMUSG00000025482 nonsynonymous SNV ENSMUST00000106049:c.C385T:p.P129S 7qF5 NA NA chr7 148034707 GGCxCGG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 76 0 0 15.574129 0.184211 0.02 -0.331902 31 7 895 201 60 60 0 0 CC 9.604373 32 0 873 0 KEEP + Odf3 NO AA_1 chr7 148886707 148886707 A T intronic Muc2 NA NA exonic Muc2 synonymous SNV uc009klz.2:c.A333T:p.I111I exonic ENSMUSG00000025515 synonymous SNV ENSMUST00000167366:c.A759T:p.I253I 7qF5 NA NA chr7 148886707 CATxTTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 72 0 0 14.46019 0.3 0.02 -0.175247 14 6 357 169 60 60 0 0 AA 12.617285 42 0 1097 0 KEEP + Muc2 YES AA_1 chr7 148931522 148931522 A C exonic Muc2 unknown UNKNOWN exonic Muc2 nonsynonymous SNV uc009kma.2:c.A3956C:p.K1319T exonic ENSMUSG00000025515 nonsynonymous SNV ENSMUST00000026590:c.A4385C:p.K1462T 7qF5 NA NA chr7 148931522 CCAxGTC A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 416 3 0 33.655334 0.168224 0.02 2.622535 89 18 2594 461 60 60 0 0 AA 70.045708 233 0 6469 0 KEEP + Muc2 NO AA_1 chr7 148990358 148990358 G T intronic Muc5ac NA NA intronic Muc5ac NA NA intronic ENSMUSG00000037974 NA NA 7qF5 NA NA chr7 148990358 GTTxGGT G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 40 4 0 12.113244 0.294118 0.02 -0.14909 12 5 352 142 60 60 0 0 GG 4.512264 15 0 427 0 KEEP + Muc5ac NO AA_1 chr7 149171403 149171403 A T intronic Brsk2 NA NA intronic Brsk2 NA NA intronic ENSMUSG00000053046 NA NA 7qF5 NA NA chr7 149171403 TGAxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09971 0.099721 0.999892 36 0 0 20.083657 0.7 0.02 -0.087692 3 7 87 194 60 60 0 0 AA 6.918238 23 0 642 0 KEEP + Brsk2 YES AA_1 chr7 149697987 149697987 A T exonic Tnnt3 nonsynonymous SNV NM_001163670:c.A371T:p.E124V exonic Tnnt3 nonsynonymous SNV uc009knt.2:c.A356T:p.E119V exonic ENSMUSG00000061723 nonsynonymous SNV ENSMUST00000105942:c.A356T:p.E119V 7qF5 NA NA chr7 149697987 CTGxAGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077064 0.077336 0.99649 28 0 0 7.143216 0.333333 0.02 -0.078926 6 3 173 82 60 60 0 0 AA 4.511979 15 0 420 0 KEEP + Tnnt3 YES AA_1 chr7 15518046 15518046 T A intergenic "Gm4745(dist=266701),Obox2(dist=456154)" NA NA intergenic "Gm4745(dist=266701),Obox2(dist=456154)" NA NA intergenic "ENSMUSG00000075887(dist=20235),ENSMUSG00000074369(dist=421340)" NA NA 7qA1 "Score=0.972196;Name=No.98446,chr7:16175725" NA chr7 15518046 ACCxTGA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 116 0 1 7.55477 0.428571 0.02 -0.061378 4 3 111 82 60 60 0 0 TT 26.764811 89 0 2507 0 KEEP NA Gm4745 YES AA_1 chr7 16211671 16211671 A T exonic Obox3 nonsynonymous SNV NM_145707:c.T421A:p.W141R exonic Obox3 nonsynonymous SNV uc009fgi.2:c.T421A:p.W141R exonic ENSMUSG00000066772 nonsynonymous SNV ENSMUST00000086122:c.T421A:p.W141R 7qA2 "Score=0.98192;Name=No.98723,chr7:16053985" NA chr7 16211671 ACCxGAT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 146 1 22 18.008778 0.368421 0.02 -0.166636 12 7 355 201 55 55 0 0 AA 31.583333 105 0 2941 0 KEEP - Obox3 YES AA_1 chr7 20100352 20100352 C G intronic Trappc6a NA NA intronic Trappc6a NA NA intronic ENSMUSG00000002043 NA NA 7qA3 NA NA chr7 20100352 TTGxCAG C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 230 4 0 67.764501 0.317073 0.02 1.2633 56 26 1630 776 60 60 0 0 CC 31.25914 104 0 2839 0 KEEP + Trappc6a NO AA_1 chr7 20443963 20443963 T A exonic Ceacam16 nonsynonymous SNV NM_001033419:c.A368T:p.Y123F exonic Ceacam16 nonsynonymous SNV uc009fnm.1:c.A368T:p.Y123F exonic ENSMUSG00000014686 nonsynonymous SNV ENSMUST00000014830:c.A368T:p.Y123F 7qA3 NA NA chr7 20443963 CCGxAGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 181 7 0 143.778584 0.621951 0.02 1.065961 31 51 850 1431 60 70 0 0 TT 22.252038 74 0 1967 0 KEEP - Ceacam16 YES AA_1 chr7 21629204 21629204 A G exonic Vmn1r115 synonymous SNV NM_001166745:c.T801C:p.S267S exonic Vmn1r115 synonymous SNV uc012fcp.1:c.T801C:p.S267S exonic ENSMUSG00000091435 synonymous SNV ENSMUST00000169374:c.T801C:p.S267S 7qA3 "Score=0.990258;Name=No.98919,chr7:20752867" NA chr7 21629204 ACGxGAA A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036492 0.036766 0.99257 21 2 7 8.524904 0.5 0.02 -0.05262 3 3 85 89 55 55 0 0 AA 4.210626 14 0 385 0 KEEP - Vmn1r115 NO AA_1 chr7 25498439 25498439 T A exonic BC049730 synonymous SNV NM_199150:c.T252A:p.T84T exonic BC049730 synonymous SNV uc009fqj.1:c.T252A:p.T84T exonic ENSMUSG00000045587 synonymous SNV ENSMUST00000064712:c.T90A:p.T30T 7qA3 "Score=0.902982;Name=No.100266,chr7:25473731" NA chr7 25498439 CACxGTT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999998 54 0 0 43.032983 0.823529 0.02 -0.149083 3 14 88 398 60 60 0 0 TT 10.208559 34 0 916 0 KEEP + BC049730 YES AA_1 chr7 25865796 25865796 A C exonic Zfp574 nonsynonymous SNV NM_001168506:c.A1223C:p.K408T exonic Zfp574 nonsynonymous SNV uc009frj.2:c.A1223C:p.K408T exonic ENSMUSG00000045252 nonsynonymous SNV ENSMUST00000053410:c.A1223C:p.K408T 7qA3 NA NA chr7 25865796 CCAxGTT A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 220 3 0 79.339176 0.441558 0.02 1.118541 43 34 1269 861 60 60 0 0 AA 33.978803 113 0 3112 0 KEEP + Zfp574 NO AA_1 chr7 26601276 26601276 T A intronic Cyp2s1 NA NA intronic Cyp2s1 NA NA intronic ENSMUSG00000040703 NA NA 7qA3 NA NA chr7 26601276 CTCxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 150 2 0 41.625969 0.288136 0.02 1.365995 42 17 1220 489 60 60 0 0 TT 18.345123 61 0 1686 0 KEEP - Cyp2s1 YES AA_1 chr7 28090536 28090536 G A exonic Ltbp4 nonsynonymous SNV NM_001113549:c.C4682T:p.S1561F exonic Ltbp4 nonsynonymous SNV uc009fvs.2:c.C4682T:p.S1561F exonic ENSMUSG00000040488 nonsynonymous SNV ENSMUST00000121175:c.C4682T:p.S1561F 7qA3 NA NA chr7 28090536 GGGxAGG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 101 2 0 64.597877 0.605263 0.02 -0.368239 15 23 436 647 60 60 0 0 GG 13.22957 44 0 1231 0 KEEP - Ltbp4 NO AA_1 chr7 29075301 29075301 G C intronic BC089491 NA NA intronic BC089491 NA NA intronic ENSMUSG00000046750 NA NA 7qA3 NA NA chr7 29075301 CCGxCTC G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 62 1 0 16.848726 0.291667 0.02 -0.210466 17 7 491 198 60 60 0 0 GG 8.583601 29 0 730 0 KEEP - BC089491 NO AA_1 chr7 29856892 29856892 T A exonic Ryr1 nonsynonymous SNV NM_009109:c.A7721T:p.E2574V exonic Ryr1 nonsynonymous SNV uc009gao.1:c.A7721T:p.E2574V exonic ENSMUSG00000030592 nonsynonymous SNV ENSMUST00000032813:c.A7721T:p.E2574V 7qB1 NA NA chr7 29856892 TGCxCGG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888837 0.888875 0.999957 75 0 0 73.817516 0.666667 0.02 -0.359433 13 26 361 722 60 60 0 0 TT 7.820438 26 0 724 0 KEEP - Ryr1 YES AA_1 chr7 31012645 31012645 T A exonic Tbcb synonymous SNV NM_025548:c.A333T:p.P111P exonic Tbcb synonymous SNV uc009gds.2:c.A333T:p.P111P exonic ENSMUSG00000006095 synonymous SNV ENSMUST00000006254:c.A333T:p.P111P 7qB1 NA NA chr7 31012645 TTCxGGT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 145 6 0 29.061481 0.24 0.02 1.444899 38 12 1107 353 60 60 0 0 TT 20.152701 67 0 1863 0 KEEP - Tbcb YES AA_1 chr7 31047584 31047584 T A intronic Wdr62 NA NA intronic Wdr62 NA NA intronic ENSMUSG00000037020 NA NA 7qB1 NA NA chr7 31047584 CCCxGCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019843 0.019982 0.993072 16 0 0 9.554276 0.75 0.02 -0.035082 1 3 27 91 60 60 0 0 TT 3.308778 11 0 308 0 KEEP - Wdr62 YES AA_1 chr7 3322710 3322710 A C exonic Prkcg unknown UNKNOWN exonic Prkcc nonsynonymous SNV uc012ewe.1:c.A1199C:p.K400T exonic ENSMUSG00000078816 nonsynonymous SNV ENSMUST00000172109:c.A1199C:p.K400T 7qA1 NA NA chr7 3322710 GCAxGTT A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 139 2 0 18.939605 0.1875 0.02 -0.420926 39 9 1123 247 60 60 0 0 AA 20.754773 69 0 1929 0 KEEP + Prkcg NO AA_1 chr7 36274193 36274193 C A intergenic "Slc7a9(dist=23140),Tdrd12(dist=4436)" NA NA intergenic "Slc7a9(dist=23140),Tdrd12(dist=4436)" NA NA intronic ENSMUSG00000030491 NA NA 7qB2 NA NA chr7 36274193 AACxAAA C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 135 2 0 40.769002 0.666667 0.02 -0.192929 7 14 205 399 60 60 0 0 CC 26.16857 87 0 2459 0 KEEP NA Slc7a9 NO AA_1 chr7 3793239 3793239 T A exonic "Pira2,Pira4,Pira7" nonsynonymous SNV NM_011089:c.A1394T:p.Q465L exonic "Pira2,Pira4,Pira7" nonsynonymous SNV uc012ewh.1:c.A1109T:p.Q370L exonic ENSMUSG00000089942 nonsynonymous SNV ENSMUST00000108615:c.A1394T:p.Q465L 7qA1 "Score=0.991842;Name=No.96070,chr7:3667619" NA chr7 3793239 TGCxGCA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 91 3 13 73.182696 1 0.02 -0.2017 0 22 0 627 0 60 0 0 TT 14.436617 48 0 1330 0 KEEP - Pira2 YES AA_1 chr7 4080939 4080939 C A exonic Ttyh1 nonsynonymous SNV NM_001001454:c.C771A:p.S257R exonic Ttyh1 nonsynonymous SNV uc009exa.2:c.C276A:p.S92R exonic ENSMUSG00000030428 nonsynonymous SNV ENSMUST00000108591:c.C483A:p.S161R 7qA1 NA NA chr7 4080939 GAGxTGG C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 85 2 0 24.339711 0.3125 0.02 -0.280638 22 10 646 282 60 60 0 0 CC 12.312627 41 0 1133 0 KEEP + Ttyh1 NO AA_1 chr7 4548001 4548001 T C intronic Ptprh NA NA intronic Ptprh NA NA intronic ENSMUSG00000035429 NA NA 7qA1 "Score=0.982098;Name=No.96103,chr7:4523837" NA chr7 4548001 TGCxCTC T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 257 0 15 23.363736 0.178571 0.02 1.491195 46 10 1353 300 60 60 0 0 TT 45.718326 152 0 4255 0 KEEP - Ptprh NO AA_1 chr7 4594982 4594982 T A exonic Ppp6r1 stopgain SNV NM_172894:c.A403T:p.K135X exonic Ppp6r1 stopgain SNV uc009eyb.1:c.A403T:p.K135X exonic ENSMUSG00000052296 stopgain SNV ENSMUST00000064099:c.A403T:p.K135X 7qA1 NA NA chr7 4594982 TCTxGCG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 93 0 0 83.429998 0.736842 0.02 -0.350726 10 28 288 796 60 70 0 0 TT 14.073365 47 0 1230 0 KEEP - Ppp6r1 YES AA_1 chr7 46567065 46567065 C T intergenic "Gm21276(dist=47161),Gm5114(dist=95599)" NA NA intergenic "Gm16387(dist=47161),Gm5114(dist=95599)" NA NA intergenic "ENSMUSG00000070060(dist=27562),ENSMUSG00000053742(dist=95599)" NA NA 7qB3 "Score=0.96737;Name=No.101082,chr7:39161441" NA chr7 46567065 TATxCTT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 324 6 2 7.41328 0.086957 0.02 -0.412222 42 4 1251 114 60 29 0 0 CC 64.925945 216 0 6033 0 KEEP NA Gm21276 NO AA_1 chr7 46567075 46567075 T G intergenic "Gm21276(dist=47171),Gm5114(dist=95589)" NA NA intergenic "Gm16387(dist=47171),Gm5114(dist=95589)" NA NA intergenic "ENSMUSG00000070060(dist=27572),ENSMUSG00000053742(dist=95589)" NA NA 7qB3 "Score=0.96737;Name=No.101082,chr7:39161441" NA chr7 46567075 CTGxTAC T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 306 4 2 8.359496 0.105263 0.02 -0.342015 34 4 964 120 60 29 0 0 TT 64.058398 213 0 5822 0 KEEP NA Gm21276 NO AA_1 chr7 48541846 48541846 A T exonic Gm5592 nonsynonymous SNV NM_001033782:c.A401T:p.Q134L exonic Gm5592 nonsynonymous SNV uc009glk.1:c.A401T:p.Q134L exonic ENSMUSG00000072259 nonsynonymous SNV ENSMUST00000097044:c.A401T:p.Q134L 7qB3 "Score=0.960073;Name=No.101182,chr7:48330835" NA chr7 48541846 ACCxGAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 81 4 0 34.320733 0.846154 0.02 -0.114006 2 11 56 315 60 60 0 0 AA 16.824139 56 0 1543 0 KEEP + Gm5592 YES AA_1 chr7 51137087 51137087 C T intronic Klk4 NA NA intronic Klk4 NA NA intronic ENSMUSG00000006948 NA NA 7qB4 NA NA chr7 51137087 TATxTGA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 157 1 0 107.135505 0.672727 0.02 1.311181 18 37 553 1046 60 60 0 0 CC 22.553968 75 0 2141 0 KEEP + Klk4 NO AA_1 chr7 51254185 51254185 A T exonic Klk1b11 nonsynonymous SNV NM_010640:c.A245T:p.Q82L exonic Klk1b11 nonsynonymous SNV uc009goe.1:c.A245T:p.Q82L exonic ENSMUSG00000044485 nonsynonymous SNV ENSMUST00000007156:c.A245T:p.Q82L 7qB4 NA NA chr7 51254185 TCCxACG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 110 0 0 39.12742 0.56 0.02 -0.219236 11 14 318 399 60 60 0 0 AA 19.849463 66 0 1798 0 KEEP + Klk1b11 YES AA_1 chr7 51762172 51762172 A T intronic Mybpc2 NA NA intronic Mybpc2 NA NA intronic ENSMUSG00000038670 NA NA 7qB4 NA NA chr7 51762172 CTCxAGT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999999 67 2 0 36.91127 0.541667 0.02 -0.210469 11 13 311 379 60 60 0 0 AA 10.526114 35 0 955 0 KEEP - Mybpc2 YES AA_1 chr7 51797194 51797194 T A splicing Pold1(NM_011131:exon7:c.584-2A>T) NA NA splicing Pold1(uc009gpx.2:exon7:c.584-2A>T) NA NA splicing "ENSMUSG00000038644(ENSMUST00000049343:exon7:c.584-2A>T,ENSMUST00000151793:exon7:c.584-2A>T)" NA NA 7qB4 NA NA chr7 51797194 GCCxGCG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 73 2 0 35.345334 0.419355 0.02 -0.298188 18 13 521 383 60 60 0 0 TT 9.623723 32 0 870 0 KEEP - Pold1 YES AA_1 chr7 52874139 52874139 T A exonic Fut1 nonsynonymous SNV NM_008051:c.T146A:p.L49Q exonic Fut1 nonsynonymous SNV uc009gwg.1:c.T146A:p.L49Q exonic ENSMUSG00000008461 nonsynonymous SNV ENSMUST00000008605:c.T146A:p.L49Q 7qB4 NA NA chr7 52874139 ACCxGCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 220 2 0 78.752609 0.460317 0.02 1.322131 34 29 988 838 60 60 0 0 TT 36.391604 121 0 3326 0 KEEP + Fut1 YES AA_1 chr7 53324106 53324106 A C exonic Nomo1 nonsynonymous SNV NM_153057:c.A2557C:p.T853P exonic Nomo1 nonsynonymous SNV uc009gyb.2:c.A2557C:p.T853P exonic ENSMUSG00000030835 nonsynonymous SNV ENSMUST00000033121:c.A2557C:p.T853P 7qB4 NA NA chr7 53324106 CTGxCTG A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 50 5 0 15.317162 0.315789 0.02 -0.201699 13 6 364 176 60 60 0 1 AA 6.013406 20 0 536 0 KEEP + Nomo1 NO AA_1 chr7 53484646 53484646 C G exonic Ush1c nonsynonymous SNV NM_001163733:c.G314C:p.G105A exonic Ush1c nonsynonymous SNV uc009gyg.2:c.G314C:p.G105A exonic ENSMUSG00000030838 nonsynonymous SNV ENSMUST00000009667:c.G314C:p.G105A 7qB4 NA NA chr7 53484646 AGGxCTC C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 73 2 0 16.242764 0.194444 0.02 -0.315563 29 7 827 206 60 60 0 0 CC 8.716314 29 0 793 0 KEEP - Ush1c NO AA_1 chr7 70902182 70902182 T A intronic Otud7a NA NA intronic Otud7a NA NA intronic ENSMUSG00000033510 NA NA 7qC NA NA chr7 70902182 GCCxTCC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 97 0 0 63.40195 0.647059 0.02 -0.298167 12 22 348 625 60 60 0 0 TT 12.33164 41 0 1139 0 KEEP + Otud7a YES AA_1 chr7 74903780 74903780 C G exonic Synm nonsynonymous SNV NM_183312:c.G735C:p.E245D exonic Synm nonsynonymous SNV uc009hiv.1:c.G735C:p.E245D exonic ENSMUSG00000030554 nonsynonymous SNV ENSMUST00000051389:c.G735C:p.E245D 7qC NA NA chr7 74903780 CTGxTCC C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.384517 0.387407 0.99254 35 0 0 9.368506 0.222222 0.02 -0.175417 14 4 428 116 60 60 0 0 CC 2.707417 9 0 257 0 KEEP - Synm NO AA_1 chr7 90801139 90801139 A T exonic Il16 stopgain SNV NM_010551:c.T2378A:p.L793X exonic Il16 stopgain SNV uc009idr.1:c.T284A:p.L95X exonic ENSMUSG00000001741 stopgain SNV ENSMUST00000001792:c.T2378A:p.L793X 7qD3 NA NA chr7 90801139 TTCxAGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 330 3 0 224.97888 0.632812 0.02 2.662216 47 81 1313 2229 60 60 0 0 AA 47.219346 157 0 4301 0 KEEP - Il16 YES AA_1 chr7 91424025 91424025 G A intronic Arnt2 NA NA intronic Arnt2 NA NA intronic ENSMUSG00000015709 NA NA 7qD3 NA NA chr7 91424025 TCAxAAG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120423 0.120436 0.999892 41 0 0 16.369111 0.545455 0.02 -0.096467 5 6 147 168 60 60 0 0 GG 6.919427 23 0 666 0 KEEP - Arnt2 NO AA_1 chr7 9759011 9759011 T A exonic Vmn2r44 nonsynonymous SNV NM_001105074:c.T1739A:p.L580Q exonic Vmn2r44 nonsynonymous SNV uc012eyh.1:c.T1739A:p.L580Q exonic ENSMUSG00000091178 nonsynonymous SNV ENSMUST00000166499:c.T1739A:p.L580Q 7qA1 "Score=0.971577;Name=No.96654,chr7:7479578" NA chr7 9759011 TCCxAAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 806 6 88 25.441395 0.144578 0.02 1.065731 71 12 1996 346 54 53 0 0 TT 168.697171 561 0 15332 0 KEEP + Vmn2r44 YES AA_1 chr8 105197937 105197937 T A exonic Cdh11 nonsynonymous SNV NM_009866:c.A298T:p.I100F exonic Cdh11 nonsynonymous SNV uc009mzu.1:c.A298T:p.I100F exonic ENSMUSG00000031673 nonsynonymous SNV ENSMUST00000075190:c.A298T:p.I100F 8qD2 "Score=0.936759;Name=No.103939,chr8:19990962" NA chr8 105197937 AAAxGGT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 124 5 7 12.594361 0.133333 0.02 -0.394581 39 6 1095 174 60 38 0 0 TT 18.345633 61 0 1658 0 KEEP - Cdh11 YES AA_1 chr8 107260963 107260963 A C intronic Ces2a NA NA intronic Ces2a NA NA intronic ENSMUSG00000055730 NA NA 8qD3 "Score=0.895228;Name=No.104258,chr8:107200029" NA chr8 107260963 CTGxGTT A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 74 1 0 11.781091 0.238095 0.02 -0.184159 16 5 454 144 60 60 0 0 AA 12.322224 41 0 1114 0 KEEP + Ces2a NO AA_1 chr8 108514544 108514544 A T exonic Dpep2 nonsynonymous SNV NM_176913:c.T479A:p.L160Q exonic Dpep2 nonsynonymous SNV uc009ney.1:c.T479A:p.L160Q exonic ENSMUSG00000053687 nonsynonymous SNV ENSMUST00000034373:c.T221A:p.L74Q 8qD3 NA NA chr8 108514544 CGCxGGT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 156 0 0 65.049898 0.371429 0.02 1.278507 44 26 1235 727 60 60 0 0 AA 18.648082 62 0 1714 0 KEEP - Dpep2 YES AA_1 chr8 11239129 11239129 C G intronic Col4a1 NA NA intronic Col4a1 NA NA intronic ENSMUSG00000031502 NA NA 8qA1.1 NA NA chr8 11239129 CGAxTTA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 257 3 0 145.897263 0.621951 0.02 1.271999 31 51 922 1452 60 60 0 0 CC 39.376274 131 0 3627 0 KEEP - Col4a1 NO AA_1 chr8 113157395 113157395 C A exonic Vac14 nonsynonymous SNV NM_146216:c.C466A:p.L156I exonic Vac14 nonsynonymous SNV uc009nku.1:c.C466A:p.L156I exonic ENSMUSG00000010936 nonsynonymous SNV ENSMUST00000034190:c.C466A:p.L156I 8qE1 NA NA chr8 113157395 GAGxTCC C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 297 2 0 13.162437 0.070175 0.02 2.38209 106 8 3133 219 60 60 0 0 CC 38.188911 127 0 3606 0 KEEP + Vac14 NO AA_1 chr8 11561810 11561810 A T exonic Ing1 stopgain SNV NM_011919:c.A529T:p.K177X exonic Ing1 stopgain SNV uc009kvk.1:c.A247T:p.K83X exonic ENSMUSG00000045969 stopgain SNV ENSMUST00000054399:c.A529T:p.K177X 8qA1.1 NA NA chr8 11561810 CCCxAGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 156 0 0 19.125072 0.125 0.02 1.252601 63 9 1751 266 60 60 0 0 AA 22.252555 74 0 1993 0 KEEP + Ing1 YES AA_1 chr8 11678557 11678557 A T intronic 1700016D06Rik NA NA intronic 1700016D06Rik NA NA intronic ENSMUSG00000031509 NA NA 8qA1.1 NA NA chr8 11678557 GCCxGTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 114 0 0 110.4747 0.782609 0.02 -0.403174 10 36 284 1038 60 60 0 0 AA 15.037618 50 0 1375 0 KEEP - 1700016D06Rik YES AA_1 chr8 119583475 119583475 C T exonic Pkd1l2 synonymous SNV NM_029686:c.G1890A:p.P630P exonic Pkd1l2 synonymous SNV uc012gli.1:c.G1890A:p.P630P exonic ENSMUSG00000034416 synonymous SNV ENSMUST00000109093:c.G1890A:p.P630P 8qE1 NA NA chr8 119583475 GAGxGGT C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 228 3 0 114.181605 0.343066 0.02 2.279428 90 47 2417 1300 60 60 0 0 CC 17.127871 57 0 1435 0 KEEP - Pkd1l2 NO AA_1 chr8 122555031 122555031 A T exonic Crispld2 nonsynonymous SNV NM_030209:c.A1211T:p.H404L exonic Crispld2 nonsynonymous SNV uc009nqq.2:c.A1211T:p.H404L exonic ENSMUSG00000031825 nonsynonymous SNV ENSMUST00000034282:c.A1214T:p.H405L 8qE1 NA NA chr8 122555031 CCCxCTG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 176 7 0 100.267887 0.380952 0.02 2.855351 65 40 1767 1115 60 60 0 0 AA 13.83177 46 0 1226 0 KEEP + Crispld2 YES AA_1 chr8 123610760 123610760 T G exonic Foxf1 nonsynonymous SNV NM_010426:c.T1118G:p.I373S exonic Foxf1a nonsynonymous SNV uc009nrn.1:c.T1043G:p.I348S exonic ENSMUSG00000042812 nonsynonymous SNV ENSMUST00000050684:c.T1043G:p.I348S 8qE1 NA NA chr8 123610760 ACAxCAA T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 120 3 0 17.054758 0.135593 0.02 1.47374 51 8 1416 234 60 60 0 0 TT 12.592039 42 0 1099 0 KEEP + Foxf1 NO AA_1 chr8 128411416 128411416 T A exonic Pcnxl2 nonsynonymous SNV NM_175561:c.A1195T:p.S399C exonic Pcnxl2 nonsynonymous SNV uc009nyo.1:c.A622T:p.S208C exonic ENSMUSG00000060212 nonsynonymous SNV ENSMUST00000047239:c.A1195T:p.S399C 8qE2 NA NA chr8 128411416 CACxGGT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 112 0 0 76.425499 0.432836 0.02 1.197209 38 29 1098 825 60 60 0 0 TT 12.631756 42 0 1155 0 KEEP - Pcnxl2 YES AA_1 chr8 12996633 12996633 A T exonic Mcf2l synonymous SNV NM_001159485:c.A447T:p.P149P exonic Mcf2l synonymous SNV uc009kwp.1:c.A324T:p.P108P exonic ENSMUSG00000031442 synonymous SNV ENSMUST00000145067:c.A324T:p.P108P 8qA1.1 NA NA chr8 12996633 GCCxGAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739662 0.739671 0.999988 70 0 0 69.510229 0.71875 0.02 -0.280642 9 23 259 668 60 60 0 0 AA 8.121267 27 0 752 0 KEEP + Mcf2l YES AA_1 chr8 13013931 13013931 T G exonic Mcf2l nonsynonymous SNV NM_178076:c.T2970G:p.S990R exonic Mcf2l nonsynonymous SNV uc009kwp.1:c.T2781G:p.S927R exonic ENSMUSG00000031442 nonsynonymous SNV ENSMUST00000145067:c.T2781G:p.S927R 8qA1.1 NA NA chr8 13013931 TAGxTCT T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 503 2 0 235.161493 0.370968 0.02 5.772037 156 92 4426 2623 60 60 0 0 TT 59.245722 197 0 5418 0 KEEP + Mcf2l NO AA_1 chr8 15945099 15945099 G T exonic Csmd1 synonymous SNV NM_053171:c.C7935A:p.I2645I exonic Csmd1 synonymous SNV uc009kzp.1:c.C7935A:p.I2645I exonic ENSMUSG00000060924 synonymous SNV ENSMUST00000110789:c.C6840A:p.I2280I 8qA1.1 NA NA chr8 15945099 AAAxATG G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 81 2 0 13.002371 0.25 0.02 -0.210477 18 6 539 160 60 60 0 0 GG 14.439683 48 0 1376 0 KEEP - Csmd1 NO AA_1 chr8 19784741 19784741 C A intergenic "4930467E23Rik(dist=31139),6820431F20Rik(dist=79123)" NA NA UTR5 5330429B09Rik NA NA upstream ENSMUSG00000059078 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:20006570" NA chr8 19784741 GGGxAAA C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1660 31 64 27.214286 0.035573 0.02 12.766491 488 18 14534 523 60 60 0 0 CC 260.693255 870 1 24105 7 KEEP + 4930467E23Rik NO AA_1 chr8 19892762 19892762 C A ncRNA_intronic 6820431F20Rik NA NA exonic 5330429B09Rik nonsynonymous SNV uc009lax.2:c.G245T:p.G82V ncRNA_exonic ENSMUSG00000071796 NA NA 8qA1.3 "Score=0.986544;Name=No.103912,chr8:19775047" NA chr8 19892762 ACCxCAG C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58286 0.58293 0.999879 63 4 7 16.147844 0.291667 0.02 -0.219247 17 7 511 191 60 43 0 0 CC 6.617158 22 0 609 0 KEEP - 6820431F20Rik NO AA_1 chr8 20019877 20019877 G A ncRNA_intronic "2610005L07Rik,6820431F20Rik" NA NA exonic Gm10348 nonsynonymous SNV uc009lbg.1:c.C398T:p.A133V ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20019877 GCCxCGG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 116 2 3 7.87747 0.125 0.02 -0.289315 28 4 758 112 60 60 0 0 GG 20.44492 68 0 1800 0 KEEP - 2610005L07Rik NO AA_1 chr8 20020162 20020162 G A ncRNA_intronic "2610005L07Rik,6820431F20Rik" NA NA exonic Gm10348 nonsynonymous SNV uc009lbg.1:c.C113T:p.P38L ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020162 CGCxGCG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 368 9 49 9.637487 0.051724 0.02 2.212265 110 6 2597 170 60 29 0 0 GG 49.435581 165 0 3815 0 KEEP - 2610005L07Rik NO AA_1 chr8 20020279 20020279 G T ncRNA_exonic 2610005L07Rik NA NA UTR5 Gm10348 NA NA ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020279 TTTxCCC G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 621 7 114 24.831382 0.078534 0.02 5.198619 176 15 5206 403 60 57 0 0 GG 87.495497 291 0 8138 0 KEEP - 2610005L07Rik NO AA_1 chr8 20020448 20020448 G T upstream "2610005L07Rik,6820431F20Rik" NA NA upstream Gm10348 NA NA upstream ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020448 CGCxCCC G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 281 2 13 36.372328 0.160377 0.02 2.749133 89 17 2431 485 60 60 0 0 GG 42.394179 141 0 3747 0 KEEP NA 2610005L07Rik NO AA_1 chr8 3380330 3380330 A T exonic A430078G23Rik nonsynonymous SNV NM_001033378:c.A202T:p.S68C exonic A430078G23Rik nonsynonymous SNV uc009krg.2:c.A19T:p.S7C exonic ENSMUSG00000074497 nonsynonymous SNV ENSMUST00000098965:c.A202T:p.S68C 8qA1.1 NA NA chr8 3380330 GGCxGCG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 95 2 0 29.471463 0.307692 0.02 -0.342018 27 12 775 342 60 60 0 0 AA 13.234068 44 0 1218 0 KEEP + A430078G23Rik YES AA_1 chr8 36450219 36450219 C T UTR3 Ppp1r3b NA NA UTR3 Ppp1r3b NA NA UTR3 ENSMUSG00000046794 NA NA 8qA4 NA NA chr8 36450219 AGCxTCG C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 182 0 0 25.199804 0.2 0.02 1.311181 44 11 1308 319 60 60 0 0 CC 31.563081 105 0 2925 0 KEEP + Ppp1r3b NO AA_1 chr8 36450437 36450437 A T UTR3 Ppp1r3b NA NA UTR3 Ppp1r3b NA NA UTR3 ENSMUSG00000046794 NA NA 8qA4 NA NA chr8 36450437 TCCxTAT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 83 0 0 58.242619 0.826087 0.02 -0.210452 4 19 110 538 60 60 0 0 AA 14.434961 48 0 1297 0 KEEP + Ppp1r3b YES AA_1 chr8 58351003 58351003 T A exonic Adam29 synonymous SNV NM_175939:c.A1212T:p.T404T exonic Adam29 synonymous SNV uc009lsm.2:c.A1212T:p.T404T exonic ENSMUSG00000046258 synonymous SNV ENSMUST00000053441:c.A1212T:p.T404T 8qB2 NA NA chr8 58351003 GCGxGTC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 94 0 0 14.281868 0.24 0.02 -0.219181 19 6 523 174 60 60 0 0 TT 15.637413 52 0 1398 0 KEEP - Adam29 YES AA_1 chr8 65025943 65025943 T A intergenic "Anxa10(dist=424028),Spock3(dist=404086)" NA NA intergenic "Anxa10(dist=424028),Spock3(dist=404086)" NA NA intergenic "ENSMUSG00000031635(dist=424028),ENSMUSG00000089528(dist=236466)" NA NA 8qB3.1 NA NA chr8 65025943 CTCxGGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 94 2 3 61.671036 0.65625 0.02 -0.289404 11 21 314 606 60 60 0 0 TT 16.221606 54 0 1470 0 KEEP NA Anxa10 YES AA_1 chr8 67492663 67492663 A T exonic Tmem192 nonsynonymous SNV NM_001163747:c.A596T:p.Y199F exonic Tmem192 nonsynonymous SNV uc009lvc.2:c.A596T:p.Y199F exonic ENSMUSG00000025521 nonsynonymous SNV ENSMUST00000079896:c.A596T:p.Y199F 8qB3.1 NA NA chr8 67492663 TGTxCCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 65 1 0 11.867974 0.227273 0.02 -0.192812 17 5 438 146 60 60 0 0 AA 9.294282 31 0 801 0 KEEP + Tmem192 YES AA_1 chr8 72321161 72321161 A T exonic Atp13a1 synonymous SNV NM_133224:c.A1005T:p.V335V exonic Atp13a1 synonymous SNV uc009lxr.2:c.A1005T:p.V335V exonic ENSMUSG00000031862 synonymous SNV ENSMUST00000034326:c.A1005T:p.V335V 8qB3.3 NA NA chr8 72321161 TGTxCTG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 389 8 0 256.245709 0.494737 0.02 3.688254 96 94 2610 2686 60 60 0 0 AA 37.577988 125 0 3316 0 KEEP + Atp13a1 YES AA_1 chr8 73114712 73114712 C T exonic Ell nonsynonymous SNV NM_007924:c.C1595T:p.T532I exonic Ell nonsynonymous SNV uc009mau.1:c.C1595T:p.T532I exonic ENSMUSG00000070002 nonsynonymous SNV ENSMUST00000093454:c.C1595T:p.T532I 8qB3.3 NA NA chr8 73114712 TCAxCCA C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 67 1 0 21.128723 0.333333 0.02 -0.236767 18 9 532 243 60 60 0 0 CC 10.828463 36 0 1006 0 KEEP + Ell NO AA_1 chr8 74188005 74188005 T A intronic Unc13a NA NA intronic Unc13a NA NA intronic ENSMUSG00000034799 NA NA 8qB3.3 NA NA chr8 74188005 TCCxTAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 224 1 0 96.367696 0.435294 0.02 1.048096 48 37 1411 1040 60 60 0 0 TT 30.380643 101 0 2836 0 KEEP - Unc13a YES AA_1 chr8 86459472 86459472 A T exonic Lphn1 nonsynonymous SNV NM_181039:c.A3062T:p.H1021L exonic Lphn1 nonsynonymous SNV uc009mli.2:c.A2549T:p.H850L exonic ENSMUSG00000013033 nonsynonymous SNV ENSMUST00000131717:c.A2549T:p.H850L 8qC3 NA NA chr8 86459472 TGCxCAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 221 4 0 206.912591 0.584 0.02 2.68934 52 73 1424 2089 60 60 0 0 AA 17.142464 57 0 1548 0 KEEP + Lphn1 YES AA_1 chr8 86552213 86552213 G T exonic Palm3 nonsynonymous SNV NM_028877:c.G454T:p.D152Y exonic Palm3 nonsynonymous SNV uc012ggy.1:c.G193T:p.D65Y exonic ENSMUSG00000047986 nonsynonymous SNV ENSMUST00000055077:c.G454T:p.D152Y 8qC3 NA NA chr8 86552213 ACTxATG G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 460 3 0 21.870073 0.053061 0.02 6.57002 232 13 6964 377 60 60 0 0 GG 34.882528 116 0 3304 0 KEEP + Palm3 NO AA_1 chr8 89087863 89087863 G C exonic Abcc12 nonsynonymous SNV NM_172912:c.C146G:p.A49G exonic Abcc12 nonsynonymous SNV uc009mqk.1:c.C146G:p.A49G exonic ENSMUSG00000036872 nonsynonymous SNV ENSMUST00000074742:c.C146G:p.A49G 8qC3 NA NA chr8 89087863 CCAxCAT G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 142 0 0 99.959234 0.45679 0.02 1.281153 44 37 1298 1066 60 60 0 0 GG 14.136398 47 0 1299 0 KEEP - Abcc12 NO AA_1 chr8 90306353 90306353 A T exonic Zfp423 nonsynonymous SNV NM_033327:c.T1261A:p.Y421N exonic Zfp423 nonsynonymous SNV uc009mqv.1:c.T1261A:p.Y421N exonic ENSMUSG00000045333 nonsynonymous SNV ENSMUST00000165770:c.T886A:p.Y296N 8qC3 NA NA chr8 90306353 AATxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 270 1 0 222.235782 0.570423 0.02 2.307396 61 81 1688 2258 60 60 0 0 AA 27.932972 93 0 2510 0 KEEP - Zfp423 YES AA_1 chr8 95716680 95716680 T A exonic Ces1d nonsynonymous SNV NM_053200:c.A382T:p.T128S exonic Ces1d nonsynonymous SNV uc009mun.1:c.A382T:p.T128S exonic ENSMUSG00000056973 nonsynonymous SNV ENSMUST00000034172:c.A382T:p.T128S 8qC5 NA NA chr8 95716680 TTGxCAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.289823 0.292001 0.99254 27 0 0 21.310501 0.470588 0.02 -0.149081 9 8 256 226 60 60 0 0 TT 2.70671 9 0 244 0 KEEP - Ces1d YES AA_1 chr8 96054720 96054720 T A exonic Ces5a nonsynonymous SNV NM_001003951:c.A356T:p.E119V exonic Ces5a nonsynonymous SNV uc009mvh.1:c.A356T:p.E119V exonic ENSMUSG00000058019 nonsynonymous SNV ENSMUST00000077816:c.A356T:p.E119V 8qC5 NA NA chr8 96054720 TCCxCTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.758216 0.760887 0.99649 51 1 0 48.558731 0.5625 0.02 -0.289356 14 18 387 495 60 60 0 0 TT 4.511929 15 0 421 0 KEEP - Ces5a YES AA_1 chr8_random 690820 690820 G A intergenic "Tsnax(dist=89305),NONE(dist=NONE)" NA NA intergenic "Tsnax(dist=89305),AK029792(dist=56894)" NA NA downstream ENSMUSG00000074455 NA NA NA "Score=0.989584;Name=No.105235,chr8_random:819725" NA chr8_random 690820 TTAxACT G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 759 2 124 13.158956 0.1875 0.02 -0.280646 26 6 772 170 46 40 0 0 GG 192.514543 640 0 18378 0 KEEP NA Tsnax NO AA_1 chr9 100756315 100756315 A T exonic Stag1 synonymous SNV NM_009282:c.A1305T:p.L435L exonic Stag1 synonymous SNV uc009rfa.1:c.A1305T:p.L435L exonic ENSMUSG00000037286 synonymous SNV ENSMUST00000041418:c.A1305T:p.L435L 9qE4 NA NA chr9 100756315 CCTxCAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 66 0 0 14.787999 0.333333 0.02 -0.157799 12 6 316 169 60 60 0 0 AA 11.721641 39 0 1041 0 KEEP + Stag1 YES AA_1 chr9 106086521 106086521 A T exonic Wdr82 nonsynonymous SNV NM_029896:c.A437T:p.H146L exonic Wdr82 nonsynonymous SNV uc009rjc.1:c.A437T:p.H146L exonic ENSMUSG00000020257 nonsynonymous SNV ENSMUST00000020490:c.A437T:p.H146L 9qF1 NA NA chr9 106086521 TGCxTCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 96 6 0 33.334905 0.461538 0.02 -0.227929 14 12 372 354 60 60 0 0 AA 15.036765 50 0 1349 0 KEEP + Wdr82 YES AA_1 chr9 108111422 108111422 T A exonic Dag1 nonsynonymous SNV NM_001276481:c.A850T:p.M284L exonic Dag1 nonsynonymous SNV uc009rpa.1:c.A850T:p.M284L exonic ENSMUSG00000039952 nonsynonymous SNV ENSMUST00000166905:c.A850T:p.M284L 9qF2 NA NA chr9 108111422 ACAxAGC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 120 0 0 95.130894 0.555556 0.02 1.143434 28 35 729 972 60 60 0 0 TT 14.700923 49 0 1291 0 KEEP - Dag1 YES AA_1 chr9 108111423 108111423 A C exonic Dag1 synonymous SNV NM_001276481:c.T849G:p.A283A exonic Dag1 synonymous SNV uc009rpa.1:c.T849G:p.A283A exonic ENSMUSG00000039952 synonymous SNV ENSMUST00000166905:c.T849G:p.A283A 9qF2 NA NA chr9 108111423 CATxGCA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 120 0 0 80.956458 0.548387 0.02 1.250281 28 34 773 833 60 60 0 0 AA 14.43693 48 0 1324 0 KEEP - Dag1 NO AA_1 chr9 108436113 108436113 C A exonic Qrich1 nonsynonymous SNV NM_175143:c.C505A:p.Q169K exonic Qrich1 nonsynonymous SNV uc009rqb.2:c.C505A:p.Q169K exonic ENSMUSG00000006673 nonsynonymous SNV ENSMUST00000112155:c.C505A:p.Q169K 9qF2 NA NA chr9 108436113 GCTxAGA C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 68 2 0 14.741573 0.194444 0.02 -0.315725 29 7 863 191 60 60 0 0 CC 9.325817 31 0 891 0 KEEP + Qrich1 NO AA_1 chr9 108713363 108713363 C A intronic Nckipsd NA NA intronic Nckipsd NA NA intronic ENSMUSG00000032598 NA NA 9qF2 NA NA chr9 108713363 TACxCAC C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 102 1 0 54.351415 0.571429 0.02 -0.315687 15 20 450 552 60 60 0 0 CC 14.136912 47 0 1310 0 KEEP + Nckipsd NO AA_1 chr9 108713365 108713365 A T intronic Nckipsd NA NA intronic Nckipsd NA NA intronic ENSMUSG00000032598 NA NA 9qF2 NA NA chr9 108713365 CCCxCCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.851984 0.851984 1 108 1 0 57.354878 0.540541 0.02 -0.333251 17 20 473 589 60 60 0 0 AA 15.331098 51 0 1376 0 KEEP + Nckipsd YES AA_1 chr9 108888537 108888537 A T exonic Ucn2 synonymous SNV NM_145077:c.A321T:p.L107L exonic Ucn2 synonymous SNV uc012hax.1:c.A321T:p.L107L exonic ENSMUSG00000049699 synonymous SNV ENSMUST00000052724:c.A321T:p.L107L 9qF2 NA NA chr9 108888537 ACTxGCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 97 0 0 49.65686 0.463415 0.02 -0.368217 22 19 640 529 60 60 0 0 AA 13.532675 45 0 1220 0 KEEP + Ucn2 YES AA_1 chr9 118598521 118598521 A T exonic Itga9 stopgain SNV NM_133721:c.A1510T:p.K504X exonic Itga9 stopgain SNV uc009rzw.2:c.A1510T:p.K504X exonic ENSMUSG00000039115 stopgain SNV ENSMUST00000044165:c.A1510T:p.K504X 9qF3 NA NA chr9 118598521 GGCxAGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 125 0 0 67.175469 0.657143 0.02 -0.306018 12 23 309 659 60 60 0 0 AA 21.328102 74 1 2047 8 KEEP + Itga9 YES AA_1 chr9 118598522 118598522 A T exonic Itga9 nonsynonymous SNV NM_133721:c.A1511T:p.K504M exonic Itga9 nonsynonymous SNV uc009rzw.2:c.A1511T:p.K504M exonic ENSMUSG00000039115 nonsynonymous SNV ENSMUST00000044165:c.A1511T:p.K504M 9qF3 NA NA chr9 118598522 GCAxGAA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 124 0 0 65.992653 0.657143 0.02 -0.30691 12 23 345 648 60 60 0 0 AA 22.559208 75 0 2098 0 KEEP + Itga9 YES AA_1 chr9 119448755 119448755 C G exonic Scn5a nonsynonymous SNV NM_001253860:c.G821C:p.G274A exonic Scn5a nonsynonymous SNV uc009sbe.1:c.G419C:p.G140A exonic ENSMUSG00000032511 nonsynonymous SNV ENSMUST00000065196:c.G821C:p.G274A 9qF4 NA NA chr9 119448755 TTGxCCA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 90 0 0 19.130383 0.258065 0.02 -0.28065 23 8 677 230 60 60 0 0 CC 14.136991 47 0 1309 0 KEEP - Scn5a NO AA_1 chr9 119533281 119533281 A T intronic Scn10a NA NA intronic Scn10a NA NA intronic ENSMUSG00000034533 NA NA 9qF4 NA NA chr9 119533281 CCAxAGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 77 0 0 30.795949 0.5 0.02 -0.219218 12 12 342 323 60 60 0 0 AA 12.031284 40 0 1111 0 KEEP - Scn10a YES AA_1 chr9 120044508 120044508 A T intergenic "Rpsa(dist=3021),Mobp(dist=14352)" NA NA intergenic "Rpsa(dist=3021),Mobp(dist=14352)" NA NA intergenic "ENSMUSG00000032518(dist=3021),ENSMUSG00000032517(dist=14352)" NA NA 9qF4 NA NA chr9 120044508 CATxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 107 0 0 41.867923 0.410256 0.02 -0.34197 23 16 616 457 60 60 0 0 AA 18.939864 63 0 1654 0 KEEP NA Rpsa YES AA_1 chr9 120449797 120449797 A T exonic Entpd3 nonsynonymous SNV NM_178676:c.A16T:p.T6S exonic Entpd3 nonsynonymous SNV uc009scq.2:c.A16T:p.T6S exonic ENSMUSG00000041608 nonsynonymous SNV ENSMUST00000047687:c.A16T:p.T6S 9qF4 NA NA chr9 120449797 ATGxCCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 108 0 0 19.316508 0.333333 0.02 -0.209013 16 8 404 221 60 60 0 0 AA 14.854852 59 1 1563 27 KEEP + Entpd3 YES AA_1 chr9 122277187 122277187 A T exonic Abhd5 nonsynonymous SNV NM_026179:c.A320T:p.Y107F exonic Abhd5 nonsynonymous SNV uc009sew.1:c.A320T:p.Y107F exonic ENSMUSG00000032540 nonsynonymous SNV ENSMUST00000156520:c.A320T:p.Y107F 9qF4 NA NA chr9 122277187 TCTxTGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 99 0 0 32.097139 0.448276 0.02 -0.253721 16 13 425 346 60 60 0 0 AA 18.938495 63 0 1656 0 KEEP + Abhd5 YES AA_1 chr9 123944522 123944522 T C UTR3 Ccr3 NA NA UTR3 Ccr3 NA NA UTR3 ENSMUSG00000035448 NA NA 9qF4 NA NA chr9 123944522 AGCxCAG T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.387405 0.387407 0.999995 79 0 0 6.461918 0.15 0.02 -0.175395 17 3 490 87 60 60 0 0 TT 13.534638 45 0 1251 0 KEEP + Ccr3 NO AA_1 chr9 14881372 14881372 T A exonic Hephl1 nonsynonymous SNV NM_001164797:c.A1883T:p.Y628F exonic Hephl1 nonsynonymous SNV uc009ofj.2:c.A1883T:p.Y628F exonic ENSMUSG00000031936 nonsynonymous SNV ENSMUST00000159985:c.A1883T:p.Y628F 9qA2 NA NA chr9 14881372 CCGxACA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 97 0 0 52.840945 0.465116 0.02 -0.377012 23 20 615 562 60 60 0 0 TT 11.42579 38 0 1005 0 KEEP - Hephl1 YES AA_1 chr9 20064979 20064979 T A exonic Olfr872 nonsynonymous SNV NM_146560:c.T694A:p.Y232N exonic Olfr872 nonsynonymous SNV uc009oif.2:c.T694A:p.Y232N exonic ENSMUSG00000066897 nonsynonymous SNV ENSMUST00000086474:c.T694A:p.Y232N 9qA3 NA NA chr9 20064979 TCAxACT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 79 0 0 11.822126 0.357143 0.02 -0.122693 9 5 234 134 60 60 0 0 TT 17.739261 59 0 1551 0 KEEP + Olfr872 YES AA_1 chr9 21207811 21207811 A T exonic Ilf3 nonsynonymous SNV NM_001042707:c.A2294T:p.Y765F exonic Ilf3 nonsynonymous SNV uc009olg.1:c.A1289T:p.Y430F exonic ENSMUSG00000032178 nonsynonymous SNV ENSMUST00000067646:c.A2294T:p.Y765F 9qA3 NA NA chr9 21207811 AGTxCAG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.847205 0.851984 0.994391 59 1 0 51.72989 0.5 0.02 -0.333085 19 19 495 541 60 60 0 0 AA 3.909278 13 0 347 0 KEEP + Ilf3 YES AA_1 chr9 26564443 26564443 A T exonic B3gat1 nonsynonymous SNV NM_029792:c.A743T:p.H248L exonic B3gat1 nonsynonymous SNV uc009ops.1:c.A572T:p.H191L exonic ENSMUSG00000045994 nonsynonymous SNV ENSMUST00000159527:c.A572T:p.H191L 9qA4 NA NA chr9 26564443 CCCxCCG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 174 4 1 75.136111 0.528302 0.02 1.428078 25 28 670 777 60 60 0 0 AA 27.544869 96 1 2506 11 KEEP + B3gat1 YES AA_1 chr9 27127268 27127268 A T intronic Igsf9b NA NA intronic Igsf9b NA NA intronic ENSMUSG00000034275 NA NA 9qA4 NA NA chr9 27127268 GTGxGGC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 159 4 0 68.463175 0.329412 0.02 1.039354 57 28 1649 785 60 60 0 0 AA 12.629771 42 0 1155 0 KEEP + Igsf9b YES AA_1 chr9 32472190 32472190 C T intergenic "Fli1(dist=123237),Ets1(dist=31437)" NA NA exonic Ets1 nonsynonymous SNV uc009osa.1:c.C100T:p.P34S exonic ENSMUSG00000032035 nonsynonymous SNV ENSMUST00000058892:c.C100T:p.P34S 9qA4 NA NA chr9 32472190 GATxCTC C T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 141 2 0 36.755981 0.375 0.02 -0.359488 25 15 749 411 60 60 0 0 CC 22.25302 74 0 2085 0 KEEP + Fli1 NO AA_1 chr9 37580796 37580796 T C exonic Olfr875 nonsynonymous SNV NM_146749:c.T551C:p.L184P exonic Olfr875 nonsynonymous SNV uc009ovm.2:c.T551C:p.L184P exonic ENSMUSG00000058628 nonsynonymous SNV ENSMUST00000080634:c.T551C:p.L184P 9qA4 NA NA chr9 37580796 TTCxTGA T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 365 0 0 31.85217 0.152174 0.02 1.068231 78 14 2221 422 60 60 0 0 TT 68.276287 227 0 6324 0 KEEP + Olfr875 NO AA_1 chr9 37950918 37950918 A T exonic Olfr890 nonsynonymous SNV NM_146481:c.A197T:p.Y66F exonic Olfr890 nonsynonymous SNV uc009ovy.1:c.A197T:p.Y66F exonic ENSMUSG00000061096 nonsynonymous SNV ENSMUST00000079804:c.A197T:p.Y66F 9qA4 NA NA chr9 37950918 ACTxCTT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 370 4 0 35.436344 0.254237 0.02 1.178031 44 15 1188 428 60 60 0 0 AA 74.549324 248 0 6559 0 KEEP + Olfr890 YES AA_1 chr9 38137992 38137992 A T exonic Olfr25 nonsynonymous SNV NM_146870:c.A819T:p.Q273H exonic Olfr25 nonsynonymous SNV uc009owe.2:c.A819T:p.Q273H exonic ENSMUSG00000058270 nonsynonymous SNV ENSMUST00000071449:c.A819T:p.Q273H 9qA5.1 NA NA chr9 38137992 TCAxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 110 2 0 21.961738 0.571429 0.02 -0.122772 6 8 175 223 60 60 0 0 AA 23.140783 77 0 2131 0 KEEP + Olfr25 YES AA_1 chr9 39318589 39318589 T A exonic Olfr957 nonsynonymous SNV NM_146745:c.A715T:p.S239C exonic Olfr957 nonsynonymous SNV uc009oyb.1:c.A715T:p.S239C exonic ENSMUSG00000042949 nonsynonymous SNV ENSMUST00000051653:c.A715T:p.S239C 9qA5.1 NA NA chr9 39318589 TGCxGAA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 152 0 0 28.011968 0.392857 0.02 -0.245112 17 11 466 309 60 60 0 0 TT 31.551642 105 0 2858 0 KEEP - Olfr957 YES AA_1 chr9 43900554 43900554 T G intronic Usp2 NA NA intronic Usp2 NA NA intronic "ENSMUSG00000032010,ENSMUSG00000053128" NA NA 9qA5.1 NA NA chr9 43900554 GTCxTTT T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 121 0 0 19.511637 0.272727 0.02 -0.288564 24 9 652 236 60 60 0 0 TT 21.957209 73 0 2032 0 KEEP - Usp2 NO AA_1 chr9 44054798 44054798 T A intronic Ccdc153 NA NA intronic Ccdc153 NA NA intronic ENSMUSG00000070306 NA NA 9qA5.2 NA NA chr9 44054798 CACxGTC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 122 0 0 79.09222 0.622222 0.02 1.383558 17 28 488 787 60 60 0 0 TT 15.941661 53 0 1474 0 KEEP + Ccdc153 YES AA_1 chr9 45717700 45717700 G A exonic Pcsk7 nonsynonymous SNV NM_001281934:c.G346A:p.A116T exonic Pcsk7 nonsynonymous SNV uc009pgp.1:c.G346A:p.A116T exonic ENSMUSG00000035382 nonsynonymous SNV ENSMUST00000164485:c.G346A:p.A116T 9qA5.2 NA NA chr9 45717700 CAGxCAG G A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994419 0.994422 0.999997 107 0 0 44.76126 0.287879 0.02 1.116414 47 19 1381 529 60 60 0 0 GG 8.421241 28 0 767 0 KEEP + Pcsk7 NO AA_1 chr9 48201082 48201082 A T exonic Nxpe4 nonsynonymous SNV NM_172921:c.A385T:p.R129W exonic Fam55d nonsynonymous SNV uc009phz.1:c.A385T:p.R129W exonic ENSMUSG00000044229 nonsynonymous SNV ENSMUST00000165119:c.A385T:p.R129W 9qA5.3 NA NA chr9 48201082 AACxGGA A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976864 0.976865 0.999999 107 7 3 14.923837 0.134615 0.02 1.311226 45 7 1276 205 60 37 0 0 AA 11.128641 37 0 1022 0 KEEP + Nxpe4 YES AA_1 chr9 50307264 50307264 C G exonic 1600029D21Rik nonsynonymous SNV NM_029639:c.C249G:p.S83R exonic 1600029D21Rik nonsynonymous SNV uc009pjo.1:c.C249G:p.S83R exonic ENSMUSG00000032068 nonsynonymous SNV ENSMUST00000034572:c.C249G:p.S83R 9qA5.3 NA NA chr9 50307264 CAGxCCA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 80 0 0 22.516962 0.346154 0.02 -0.253981 17 9 478 255 60 60 0 0 CC 11.730802 39 0 1089 0 KEEP + 1600029D21Rik NO AA_1 chr9 50307266 50307266 C A exonic 1600029D21Rik nonsynonymous SNV NM_029639:c.C251A:p.P84Q exonic 1600029D21Rik nonsynonymous SNV uc009pjo.1:c.C251A:p.P84Q exonic ENSMUSG00000032068 nonsynonymous SNV ENSMUST00000034572:c.C251A:p.P84Q 9qA5.3 NA NA chr9 50307266 GCCxAGT C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 78 0 0 25.050576 0.384615 0.02 -0.254169 16 10 459 278 60 60 0 0 CC 11.429779 38 0 1078 0 KEEP + 1600029D21Rik NO AA_1 chr9 50307267 50307267 A T exonic 1600029D21Rik synonymous SNV NM_029639:c.A252T:p.P84P exonic 1600029D21Rik synonymous SNV uc009pjo.1:c.A252T:p.P84P exonic ENSMUSG00000032068 synonymous SNV ENSMUST00000034572:c.A252T:p.P84P 9qA5.3 NA NA chr9 50307267 CCCxGTG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.668506 0.668523 0.999974 77 0 0 23.948712 0.384615 0.02 -0.254145 16 10 455 267 60 60 0 0 AA 11.428349 38 0 1045 0 KEEP + 1600029D21Rik YES AA_1 chr9 54229743 54229743 T A exonic Dmxl2 synonymous SNV NM_172771:c.A7713T:p.T2571T exonic Dmxl2 synonymous SNV uc009pqz.2:c.A4620T:p.T1540T exonic ENSMUSG00000041268 synonymous SNV ENSMUST00000118163:c.A7713T:p.T2571T 9qA5.3 NA NA chr9 54229743 GTAxGTG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120431 0.120436 0.999957 39 0 0 13.893861 0.454545 0.02 -0.096466 6 5 167 148 60 60 0 0 TT 7.819018 26 0 700 0 KEEP - Dmxl2 YES AA_1 chr9 66356069 66356069 A T exonic Herc1 nonsynonymous SNV NM_145617:c.A14518T:p.M4840L exonic Herc1 nonsynonymous SNV uc009qev.2:c.A14518T:p.M4840L exonic ENSMUSG00000038664 nonsynonymous SNV ENSMUST00000042824:c.A14518T:p.M4840L 9qC NA NA chr9 66356069 GACxTGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 158 2 0 99.267662 0.5 0.02 1.243791 37 37 980 1039 60 60 0 0 AA 21.044161 70 0 1874 0 KEEP + Herc1 YES AA_1 chr9 67771567 67771567 A T exonic Vps13c synonymous SNV NM_177184:c.A4671T:p.P1557P exonic Vps13c synonymous SNV uc009qms.1:c.A4671T:p.P1557P exonic ENSMUSG00000035284 synonymous SNV ENSMUST00000057972:c.A4554T:p.P1518P 9qC NA NA chr9 67771567 CCCxTCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 93 2 0 52.352977 0.527778 0.02 -0.315588 17 19 457 541 60 60 0 0 AA 12.919106 43 0 1138 0 KEEP + Vps13c YES AA_1 chr9 67774728 67774728 A T exonic Vps13c synonymous SNV NM_177184:c.A4869T:p.G1623G exonic Vps13c synonymous SNV uc009qms.1:c.A4869T:p.G1623G exonic ENSMUSG00000035284 synonymous SNV ENSMUST00000057972:c.A4752T:p.G1584G 9qC NA NA chr9 67774728 AGGxATG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 99 0 0 25.485319 0.454545 0.02 -0.19291 12 10 340 273 60 60 0 0 AA 15.641214 52 0 1455 0 KEEP + Vps13c YES AA_1 chr9 70701758 70701758 A T intronic Lipc NA NA intronic Lipc NA NA UTR3 ENSMUSG00000078305 NA NA 9qD "Score=0.982468;Name=No.60831,chr15:82946275" NA chr9 70701758 GTCxTCC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16171 0.162467 0.995343 30 0 0 13.223792 0.384615 0.02 -0.114004 8 5 224 146 60 60 0 0 AA 4.209605 14 0 374 0 KEEP - Lipc YES AA_1 chr9 72811917 72811917 A T exonic Dyx1c1 synonymous SNV NM_001163725:c.A291T:p.I97I exonic Dyx1c1 synonymous SNV uc012gwu.1:c.A291T:p.I97I exonic "ENSMUSG00000089865,ENSMUSG00000092192" synonymous SNV ENSMUST00000098567:c.A291T:p.I97I 9qD NA NA chr9 72811917 CATxTTT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 66 2 0 14.707834 0.285714 0.02 -0.184126 15 6 399 173 60 60 0 0 AA 9.020977 30 0 799 0 KEEP + Dyx1c1 YES AA_1 chr9 79746301 79746301 A T intronic Filip1 NA NA intronic Filip1 NA NA intronic ENSMUSG00000034898 NA NA 9qE1 NA NA chr9 79746301 GAGxGAC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 122 4 0 38.964127 0.333333 0.02 -0.429714 32 16 932 446 60 60 0 0 AA 18.949811 63 0 1768 0 KEEP - Filip1 YES AA_1 chrM 14499 14499 C A intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic Cytb NA NA exonic ENSMUSG00000064370 unknown UNKNOWN NA NA NA chrM 14499 CTTxTAC C A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1999 20 0 243.952061 0.147651 0.02 21.319603 762 132 22378 3431 60 60 0 0 CC 296.766942 987 0 27910 0 KEEP + NONE NO AA_1 chrX 11616201 11616201 T A intronic Bcor NA NA intronic Bcor NA NA intronic ENSMUSG00000040363 NA NA XqA1.1 NA NA chrX 11616201 ATGxAAG T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 75 0 0 48.276874 0.62963 0.02 -0.245479 10 17 262 479 60 60 0 0 TT 12.629817 42 0 1119 0 KEEP - Bcor YES AA_1 chrX 12246774 12246774 T A splicing 1810030O07Rik(NM_175141:exon4:c.352-2A>T) NA NA splicing 1810030O07Rik(uc009sqy.1:exon4:c.352-2A>T) NA NA splicing ENSMUSG00000044148(ENSMUST00000060108:exon4:c.352-2A>T) NA NA XqA1.1 NA NA chrX 12246774 GCCxATA T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 26 0 0 16.249044 0.5 0.02 -0.105233 6 6 171 170 60 60 0 0 TT 3.308093 11 0 298 0 KEEP - 1810030O07Rik YES AA_1 chrX 136098332 136098332 A T exonic Rnf128 nonsynonymous SNV NM_001254761:c.A316T:p.I106F intergenic "D330045A20Rik(dist=9213),Rnf128(dist=46827)" NA NA exonic ENSMUSG00000031438 nonsynonymous SNV ENSMUST00000113027:c.A316T:p.I106F XqF1 NA NA chrX 136098332 AAAxTTC A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 74 0 0 9.631678 0.266667 0.02 -0.131526 11 4 299 115 60 60 0 0 AA 15.337147 51 0 1382 0 KEEP NA Rnf128 YES AA_1 chrX 136359090 136359090 G T exonic Morc4 synonymous SNV NM_001193309:c.C1764A:p.S588S exonic Morc4 synonymous SNV uc009ukm.2:c.C768A:p.S256S exonic ENSMUSG00000031434 synonymous SNV ENSMUST00000033811:c.C1764A:p.S588S XqF1 NA NA chrX 136359090 ACCxGAC G T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 92 3 0 8.160144 0.105263 0.02 -0.341954 34 4 945 118 60 60 0 0 GG 13.225327 44 0 1147 0 KEEP - Morc4 NO AA_1 chrX 141556485 141556485 T A UTR3 Zcchc16 NA NA UTR3 Zcchc16 NA NA UTR3 ENSMUSG00000071679 NA NA XqF2 NA NA chrX 141556485 TGGxGCT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 61 0 0 37.636923 0.590909 0.02 -0.210047 9 13 250 379 60 60 0 0 TT 9.308822 31 0 808 0 KEEP + Zcchc16 YES AA_1 chrX 148367267 148367267 T A exonic Huwe1 synonymous SNV NM_021523:c.T12837A:p.S4279S exonic "Huwe1,KIAA312" synonymous SNV uc009ups.1:c.T2967A:p.S989S exonic ENSMUSG00000025261 synonymous SNV ENSMUST00000112622:c.T12834A:p.S4278S XqF3 NA NA chrX 148367267 CTCxATT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 49 0 0 19.547384 0.538462 0.02 -0.113907 6 7 153 201 60 60 0 0 TT 8.419976 28 0 754 0 KEEP + Huwe1 YES AA_1 chrX 153885374 153885374 A T exonic Sms nonsynonymous SNV NM_009214:c.T974A:p.L325Q exonic Sms nonsynonymous SNV uc009urz.1:c.T974A:p.L325Q exonic ENSMUSG00000071708 nonsynonymous SNV ENSMUST00000112529:c.T974A:p.L325Q XqF4 NA NA chrX 153885374 GACxGGG A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 53 0 0 10.222358 0.444444 0.02 -0.078917 5 4 141 110 60 60 0 0 AA 11.424379 38 0 1024 0 KEEP - Sms YES AA_1 chrX 154304520 154304520 T A intronic Cnksr2 NA NA intronic Cnksr2 NA NA intronic ENSMUSG00000025658 NA NA XqF4 NA NA chrX 154304520 ACTxACT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 136 2 0 24.206673 0.6 0.02 -0.13151 6 9 162 243 60 60 0 0 TT 28.533508 95 0 2549 0 KEEP - Cnksr2 YES AA_1 chrX 157663803 157663803 A C intronic Scml2 NA NA intronic Scml2 NA NA intronic ENSMUSG00000000037 NA NA XqF4 NA NA chrX 157663803 GCAxTAA A C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 311 1 116 7.610096 0.108108 0.02 -0.324437 33 4 928 112 46 23 0 0 AA 56.844778 189 0 5200 0 KEEP + Scml2 NO AA_1 chrX 160832423 160832423 C G exonic Figf nonsynonymous SNV NM_010216:c.C566G:p.A189G exonic Figf nonsynonymous SNV uc009uvm.1:c.C566G:p.A189G exonic ENSMUSG00000031380 nonsynonymous SNV ENSMUST00000033751:c.C566G:p.A189G XqF5 NA NA chrX 160832423 TTGxCAA C G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 91 0 0 47.307358 0.615385 0.02 -0.236787 10 16 285 472 60 60 0 0 CC 15.319229 51 0 1386 0 KEEP + Figf NO AA_1 chrX 31060786 31060786 T A ncRNA_exonic Gm2837 NA NA intergenic "Gm2825(dist=81044),Gm2863(dist=288261)" NA NA intergenic "ENSMUSG00000078330(dist=81034),ENSMUSG00000079650(dist=203375)" NA NA XqA3.1 "Score=0.990478;Name=No.112335,chrX:31645789" NA chrX 31060786 GCCxGAT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 889 162 13 27.645252 0.078431 0.02 5.273994 188 16 5325 442 60 60 0 0 TT 184.621593 614 0 16790 0 KEEP NA Gm2837 YES AA_1 chrX 34429869 34429869 T G exonic Nkrf nonsynonymous SNV NM_029891:c.A754C:p.T252P exonic Nkrf nonsynonymous SNV uc009sxw.1:c.A754C:p.T252P exonic ENSMUSG00000044149 nonsynonymous SNV ENSMUST00000057093:c.A754C:p.T252P XqA3.3 NA NA chrX 34429869 TAGxTAG T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 83 0 0 33.540038 0.545455 0.02 -0.201675 10 12 278 344 60 60 0 0 TT 14.135336 47 0 1281 0 KEEP - Nkrf NO AA_1 chrX 39022698 39022698 T A exonic Gria3 nonsynonymous SNV NM_001281929:c.T2327A:p.V776E exonic Gria3 nonsynonymous SNV uc009tal.2:c.T2327A:p.V776E exonic ENSMUSG00000001986 nonsynonymous SNV ENSMUST00000076349:c.T2327A:p.V776E XqA4 NA NA chrX 39022698 CAGxATT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 108 1 0 23.928455 0.4 0.02 -0.218662 15 10 405 265 60 60 0 0 TT 18.940104 63 0 1669 0 KEEP + Gria3 YES AA_1 chrX 39961549 39961549 A T splicing Tenm1(NM_011855:exon25:c.4101+2T>A) NA NA splicing Odz1(uc009tbc.1:exon25:c.4101+2T>A) NA NA splicing "ENSMUSG00000016150(ENSMUST00000115058:exon23:c.4080+2T>A,ENSMUST00000115059:exon24:c.4101+2T>A,ENSMUST00000016294:exon25:c.4101+2T>A)" NA NA XqA4 NA NA chrX 39961549 CCTxCCT A T Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 137 3 0 59.064678 0.478261 0.02 -0.403354 24 22 654 624 60 60 0 0 AA 19.540213 65 0 1736 0 KEEP - Tenm1 YES AA_1 chrX 4725863 4725863 A G intergenic "Gm3763(dist=125755),Mycs(dist=318159)" NA NA intergenic "Gm3750(dist=277846),Mycs(dist=318159)" NA NA ncRNA_exonic ENSMUSG00000080792 NA NA XqA1.1 "Score=0.991344;Name=No.106699,chrX:3202573" NA chrX 4725863 GCCxTAG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1557 31 61 116.090573 0.140044 0.02 11.242744 393 64 10878 1658 40 52 0 0 AA 248.96581 828 0 22304 0 KEEP NA Gm3763 NO AA_1 chrX 71013770 71013770 T C exonic Plxnb3 nonsynonymous SNV NM_019587:c.T4217C:p.L1406P exonic Plxnb3 nonsynonymous SNV uc009tmn.2:c.T4217C:p.L1406P exonic ENSMUSG00000031385 nonsynonymous SNV ENSMUST00000002079:c.T4217C:p.L1406P XqA7.3 NA NA chrX 71013770 AGCxTGA T C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 164 2 0 30.995363 0.162791 0.02 1.228116 72 14 2086 409 60 60 0 0 TT 19.250498 64 0 1783 0 KEEP + Plxnb3 NO AA_1 chrX 71195663 71195663 G C exonic Hcfc1 synonymous SNV NM_008224:c.C3234G:p.P1078P exonic Hcfc1 synonymous SNV uc009tnm.1:c.C3234G:p.P1078P exonic ENSMUSG00000031386 synonymous SNV ENSMUST00000033761:c.C3234G:p.P1078P XqA7.3 NA NA chrX 71195663 GGGxGGG G C Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 408 3 0 19.130069 0.059091 0.02 5.236603 207 13 6048 343 60 60 0 0 GG 35.203245 126 1 3449 25 KEEP - Hcfc1 NO AA_1 chrX 71200956 71200956 T A exonic Hcfc1 nonsynonymous SNV NM_008224:c.A922T:p.T308S exonic Hcfc1 nonsynonymous SNV uc009tnm.1:c.A922T:p.T308S exonic ENSMUSG00000031386 nonsynonymous SNV ENSMUST00000033761:c.A922T:p.T308S XqA7.3 NA NA chrX 71200956 TGGxTTC T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693577 0.693668 0.999869 62 0 0 35.673489 0.466667 0.02 -0.263057 16 14 448 380 60 60 0 0 TT 6.313506 21 0 568 0 KEEP - Hcfc1 YES AA_1 chrX 7197540 7197540 A G exonic Cacna1f synonymous SNV NM_019582:c.A2643G:p.L881L exonic Cacna1f synonymous SNV uc009slq.1:c.A129G:p.L43L exonic ENSMUSG00000031142 synonymous SNV ENSMUST00000115725:c.A2643G:p.L881L XqA1.1 NA NA chrX 7197540 CCTxGTG A G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 434 5 0 159.150156 0.365854 0.02 4.815011 104 60 2985 1773 60 60 0 0 AA 56.232499 187 0 5159 0 KEEP + Cacna1f NO AA_1 chrX 96085466 96085466 T A exonic Ophn1 stopgain SNV NM_052976:c.A109T:p.K37X exonic Ophn1 stopgain SNV uc009tva.1:c.A109T:p.K37X exonic ENSMUSG00000031214 stopgain SNV ENSMUST00000033560:c.A109T:p.K37X XqC3 NA NA chrX 96085466 CTTxGAT T A Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 222 2 0 86.394015 0.492308 0.02 1.313414 33 32 946 907 60 60 0 0 TT 36.391091 121 0 3305 0 KEEP - Ophn1 YES AA_1 chrX 9753721 9753721 T G exonic Rpgr nonsynonymous SNV NM_001177950:c.A1973C:p.K658T exonic Rpgr nonsynonymous SNV uc009sqh.2:c.A1973C:p.K658T exonic ENSMUSG00000031174 nonsynonymous SNV ENSMUST00000044598:c.A1973C:p.K658T XqA1.1 NA NA chrX 9753721 TTCxTCT T G Ot5147_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index30_CACCGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 120 0 0 13.13823 0.205882 0.02 -0.298088 27 7 787 173 60 60 0 0 TT 20.454144 68 0 1903 0 KEEP - Rpgr NO AA_2 chr10 126328693 126328693 T A intronic Xrcc6bp1 NA NA intronic Xrcc6bp1 NA NA intronic ENSMUSG00000025436 NA NA 10qD3 NA NA chr10 126328693 GTTxACC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 73 0 0 13.293069 0.454545 0.02 -0.157857 6 5 173 142 60 60 0 0 TT 11.72836 39 0 1072 0 KEEP - Xrcc6bp1 YES AA_2 chr10 22539344 22539344 C G exonic Tcf21 nonsynonymous SNV NM_011545:c.G366C:p.R122S exonic Tcf21 nonsynonymous SNV uc007eps.1:c.G366C:p.R122S exonic ENSMUSG00000045680 nonsynonymous SNV ENSMUST00000049930:c.G366C:p.R122S 10qA3 NA NA chr10 22539344 CAGxCTG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.941656 0.941741 0.999909 76 0 0 21.128684 0.191489 0.02 -0.412213 38 9 1114 268 60 60 0 0 CC 7.167742 24 0 621 0 KEEP + Tcf21 NO AA_2 chr10 23618184 23618184 A C intronic Vnn1 NA NA intronic Vnn1 NA NA intronic ENSMUSG00000037440 NA NA 10qA4 NA NA chr10 23618184 AAAxAAT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 86 0 0 31.819356 0.428571 0.02 -0.24556 16 12 463 344 60 60 0 0 AA 14.136469 47 0 1302 0 KEEP + Vnn1 NO AA_2 chr10 23712610 23712610 A T exonic Taar7a synonymous SNV NM_001010829:c.T678A:p.L226L exonic Taar7a synonymous SNV uc007eqj.1:c.T678A:p.L226L exonic ENSMUSG00000059340 synonymous SNV ENSMUST00000078532:c.T678A:p.L226L 10qA4 "Score=0.953979;Name=No.5754,chr10:23733328" NA chr10 23712610 CACxAGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 167 0 0 96.434598 0.473684 0.02 1.127032 40 36 1162 1021 60 60 0 0 AA 22.257362 74 0 2048 0 KEEP - Taar7a YES AA_2 chr10 23811390 23811390 G C exonic Taar8b nonsynonymous SNV NM_001010837:c.C711G:p.N237K exonic Taar8b nonsynonymous SNV uc007eqp.1:c.C711G:p.N237K exonic ENSMUSG00000092113 nonsynonymous SNV ENSMUST00000092654:c.C711G:p.N237K 10qA4 "Score=0.92955;Name=No.5756,chr10:23820682" NA chr10 23811390 TCTxTTG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 160 0 0 35.763261 0.2 0.02 1.135808 60 15 1699 449 60 60 0 0 GG 22.858991 76 0 2107 0 KEEP - Taar8b NO AA_2 chr10 26636229 26636229 A G exonic Arhgap18 synonymous SNV NM_176837:c.A1869G:p.E623E exonic Arhgap18 synonymous SNV uc007ese.1:c.A1869G:p.E623E exonic ENSMUSG00000039031 synonymous SNV ENSMUST00000039557:c.A1869G:p.E623E 10qA4 NA NA chr10 26636229 AGAxGTT A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 82 0 0 11.868835 0.185185 0.02 -0.2368 22 5 639 151 60 60 0 0 AA 12.332497 41 0 1146 0 KEEP + Arhgap18 NO AA_2 chr10 33669082 33669082 T A exonic Zufsp nonsynonymous SNV NM_028287:c.A209T:p.Y70F exonic Zufsp nonsynonymous SNV uc007euj.1:c.A209T:p.Y70F exonic ENSMUSG00000039531 nonsynonymous SNV ENSMUST00000048222:c.A209T:p.Y70F 10qB1 NA NA chr10 33669082 CCAxATT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 86 0 0 58.479382 0.512195 0.02 -0.35956 20 21 562 608 60 60 0 0 TT 11.727626 39 0 1039 0 KEEP - Zufsp YES AA_2 chr10 40011768 40011768 A C intronic "Amd1,Amd2" NA NA intronic Amd2 NA NA intronic ENSMUSG00000075232 NA NA 10qB1 NA NA chr10 40011768 AAAxCAC A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 56 0 0 9.169529 0.190476 0.02 -0.184161 17 4 484 117 60 60 0 0 AA 7.51915 25 0 689 0 KEEP - Amd1 NO AA_2 chr10 40561259 40561259 T A exonic Cdc40 nonsynonymous SNV NM_027879:c.A1241T:p.Y414F exonic Cdc40 nonsynonymous SNV uc007exe.2:c.A1241T:p.Y414F exonic ENSMUSG00000038446 nonsynonymous SNV ENSMUST00000044166:c.A1241T:p.Y414F 10qB1 NA NA chr10 40561259 TCAxATT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 170 0 0 56.648556 0.5 0.02 -0.367651 21 21 565 593 60 60 0 0 TT 30.071395 100 0 2671 0 KEEP - Cdc40 YES AA_2 chr10 42174246 42174246 T A exonic Lace1 nonsynonymous SNV NM_145743:c.A230T:p.D77V exonic Lace1 nonsynonymous SNV uc007eyq.1:c.A230T:p.D77V exonic ENSMUSG00000038302 nonsynonymous SNV ENSMUST00000041024:c.A230T:p.D77V 10qB2 NA NA chr10 42174246 TGGxCCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 175 0 0 88.615977 0.471429 0.02 1.179645 37 33 1067 939 60 60 0 0 TT 26.1373 87 0 2359 0 KEEP - Lace1 YES AA_2 chr10 58832078 58832078 C G intronic P4ha1 NA NA intronic P4ha1 NA NA intronic ENSMUSG00000019916 NA NA 10qB4 NA NA chr10 58832078 AGTxTTT C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 87 0 0 14.589225 0.175 0.02 -0.350744 33 7 970 193 60 60 0 0 CC 12.634107 42 0 1190 0 KEEP + P4ha1 NO AA_2 chr10 60684743 60684743 T A exonic Adamts14 nonsynonymous SNV NM_001081127:c.A1572T:p.K524N exonic Adamts14 nonsynonymous SNV uc007ffu.1:c.A1572T:p.K524N exonic ENSMUSG00000059901 nonsynonymous SNV ENSMUST00000092486:c.A1572T:p.K524N 10qB4 NA NA chr10 60684743 GCCxTTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 65 0 0 30.538069 0.387097 0.02 -0.271869 19 12 555 338 60 60 0 0 TT 9.023752 30 0 837 0 KEEP - Adamts14 YES AA_2 chr10 60805719 60805719 A C intronic Pald1 NA NA intronic X99384 NA NA intronic ENSMUSG00000020092 NA NA 10qB4 NA NA chr10 60805719 ATGxGGA A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 175 0 0 20.329953 0.134146 0.02 1.056936 71 11 2043 291 60 60 0 0 AA 23.672629 79 0 2105 0 KEEP - Pald1 NO AA_2 chr10 61758823 61758823 T A exonic Hk1 synonymous SNV NM_001146100:c.A612T:p.V204V exonic Hk1 synonymous SNV uc007fgy.2:c.A612T:p.V204V exonic ENSMUSG00000037012 synonymous SNV ENSMUST00000072357:c.A612T:p.V204V 10qB4 NA NA chr10 61758823 AGCxACA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 38 0 0 15.469458 0.352941 0.02 -0.149082 11 6 307 174 60 60 0 0 TT 5.111529 17 0 450 0 KEEP - Hk1 YES AA_2 chr10 75067353 75067353 T A intronic Ggt5 NA NA UTR5 Ggt5 NA NA intronic ENSMUSG00000006344 NA NA 10qC1 NA NA chr10 75067353 ATCxGGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 164 1 0 99.394961 0.507042 0.02 1.170921 35 36 1026 1036 60 60 0 0 TT 24.662509 82 0 2268 0 KEEP + Ggt5 YES AA_2 chr10 76260542 76260542 C A exonic Pcbp3 stopgain SNV NM_021568:c.G337T:p.E113X exonic Pcbp3 stopgain SNV uc007fuz.2:c.G337T:p.E113X exonic ENSMUSG00000001120 stopgain SNV ENSMUST00000092393:c.G241T:p.E81X 10qC1 NA NA chr10 76260542 CCTxCTC C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 220 0 0 29.276476 0.175 0.02 0.993597 66 14 1963 387 60 60 0 0 CC 31.230425 104 0 2908 0 KEEP - Pcbp3 NO AA_2 chr10 77398618 77398618 G T intronic Trpm2 NA NA intronic Trpm2 NA NA intronic ENSMUSG00000009292 NA NA 10qC1 NA NA chr10 77398618 CCTxGTA G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 88 0 0 18.231464 0.195122 0.02 -0.359591 33 8 976 232 60 60 0 0 GG 9.62669 32 0 920 0 KEEP - Trpm2 NO AA_2 chr10 79804149 79804149 G T exonic Adamtsl5 stopgain SNV NM_001113548:c.C1209A:p.Y403X exonic Adamtsl5 stopgain SNV uc011xir.1:c.C1209A:p.Y403X exonic ENSMUSG00000043822 stopgain SNV ENSMUST00000095446:c.C1209A:p.Y403X 10qC1 NA NA chr10 79804149 TTCxTAG G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 228 0 0 27.85172 0.136842 0.02 0.961528 82 13 2109 381 60 60 0 0 GG 27.899767 100 1 2403 19 KEEP - Adamtsl5 NO AA_2 chr10 80645811 80645811 G C UTR5 Dapk3 NA NA UTR5 Dapk3 NA NA exonic ENSMUSG00000053603 nonsynonymous SNV ENSMUST00000056086:c.C122G:p.A41G 10qC1 NA NA chr10 80645811 CTGxCAC G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 287 1 0 44.938057 0.162602 0.02 2.598244 103 20 3009 591 60 60 0 0 GG 36.914545 123 0 3293 0 KEEP + Dapk3 NO AA_2 chr10 83084216 83084216 A G intronic Appl2 NA NA intronic Appl2 NA NA intronic ENSMUSG00000020263 NA NA 10qC1 NA NA chr10 83084216 ACAxGCT A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 0.999999 80 0 0 20.303479 0.25 0.02 -0.28065 24 8 694 243 60 60 0 0 AA 10.82375 36 0 988 0 KEEP - Appl2 NO AA_2 chr10 86409938 86409938 T A exonic Stab2 nonsynonymous SNV NM_138673:c.A1990T:p.I664F exonic Stab2 nonsynonymous SNV uc007gqo.1:c.A1990T:p.I664F exonic ENSMUSG00000035459 nonsynonymous SNV ENSMUST00000035288:c.A1990T:p.I664F 10qC1 NA NA chr10 86409938 GGAxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 57 0 0 45.726766 0.571429 0.02 -0.245551 12 16 335 464 60 60 0 0 TT 7.515521 25 0 654 0 KEEP - Stab2 YES AA_2 chr10 88611956 88611956 T A intronic Ano4 NA NA intronic Ano4 NA NA intronic ENSMUSG00000035189 NA NA 10qC1 NA NA chr10 88611956 TGCxGAT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 113 2 0 63.458933 0.578947 0.02 -0.333275 16 22 471 642 60 60 0 0 TT 16.233688 54 0 1496 0 KEEP - Ano4 YES AA_2 chr10 94333629 94333629 A C exonic Plxnc1 nonsynonymous SNV NM_018797:c.T1679G:p.I560S exonic Plxnc1 nonsynonymous SNV uc007gvz.2:c.T1679G:p.I560S exonic ENSMUSG00000074785 nonsynonymous SNV ENSMUST00000099337:c.T1679G:p.I560S 10qC2 NA NA chr10 94333629 GGGxTAT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 73 0 0 8.11077 0.114286 0.02 -0.30696 31 4 906 116 60 60 0 0 AA 9.007566 30 0 809 0 KEEP - Plxnc1 NO AA_2 chr11 100738350 100738350 G C exonic Stat5a nonsynonymous SNV NM_001164062:c.G1352C:p.G451A exonic Stat5a nonsynonymous SNV uc011yfg.1:c.G1352C:p.G451A exonic ENSMUSG00000004043 nonsynonymous SNV ENSMUST00000107357:c.G1352C:p.G451A 11qD NA NA chr11 100738350 TTGxCAG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 79 0 0 10.364058 0.131579 0.02 -0.333269 33 5 962 144 60 60 0 0 GG 10.526812 35 0 961 0 KEEP + Stat5a NO AA_2 chr11 104159830 104159830 T G intronic Mapt NA NA intronic Mapt NA NA exonic ENSMUSG00000018411 nonsynonymous SNV ENSMUST00000106989:c.T359G:p.I120S 11qE1 NA NA chr11 104159830 AGAxTTT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 135 0 0 37.222801 0.358974 0.02 -0.342025 25 14 707 416 60 60 0 0 TT 20.146179 67 0 1787 0 KEEP + Mapt NO AA_2 chr11 104211877 104211877 T C exonic Kansl1 nonsynonymous SNV NM_001081045:c.A1929G:p.I643M exonic 1700081L11Rik nonsynonymous SNV uc007lwj.1:c.A1929G:p.I643M exonic ENSMUSG00000018412 nonsynonymous SNV ENSMUST00000106971:c.A1929G:p.I643M 11qE1 NA NA chr11 104211877 GTGxATT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 84 1 0 27.332116 0.434783 0.02 -0.201705 13 10 365 294 60 60 0 0 TT 15.632872 52 0 1378 0 KEEP - Kansl1 NO AA_2 chr11 104945167 104945167 C A intergenic "Itgb3(dist=413382),Efcab3(dist=8366)" NA NA intronic Efcab3 NA NA intronic ENSMUSG00000020690 NA NA 11qE1 NA NA chr11 104945167 TCTxACC C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 103 2 0 7.919765 0.121212 0.02 -0.29818 29 4 860 113 60 60 0 0 CC 14.98797 50 0 1375 0 KEEP + Itgb3 NO AA_2 chr11 105930883 105930883 A G exonic Taco1 nonsynonymous SNV NM_027346:c.A335G:p.K112R exonic Taco1 nonsynonymous SNV uc007lyb.1:c.A335G:p.K112R exonic ENSMUSG00000001983 nonsynonymous SNV ENSMUST00000002048:c.A335G:p.K112R 11qE1 NA NA chr11 105930883 GCAxGAA A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 96 0 0 8.110822 0.114286 0.02 -0.306974 31 4 922 116 60 60 0 0 AA 13.536078 45 0 1268 0 KEEP + Taco1 NO AA_2 chr11 106013548 106013548 G A exonic Map3k3 nonsynonymous SNV NM_011947:c.G1492A:p.D498N exonic Map3k3 nonsynonymous SNV uc007lyc.1:c.G1492A:p.D498N exonic ENSMUSG00000020700 nonsynonymous SNV ENSMUST00000002044:c.G1492A:p.D498N 11qE1 NA NA chr11 106013548 CGAxACT G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 69 0 0 13.566132 0.230769 0.02 -0.227907 20 6 581 168 60 60 0 0 GG 9.927329 33 0 946 0 KEEP + Map3k3 NO AA_2 chr11 114649403 114649403 A T exonic Kif19a nonsynonymous SNV NM_001102615:c.A2233T:p.S745C exonic Kif19a nonsynonymous SNV uc007mfq.1:c.A2233T:p.S745C exonic ENSMUSG00000010021 nonsynonymous SNV ENSMUST00000138804:c.A2083T:p.S695C 11qE2 NA NA chr11 114649403 GACxGCC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 66 0 0 25.150128 0.357143 0.02 -0.24535 18 10 507 283 60 60 0 0 AA 9.624945 32 0 888 0 KEEP + Kif19a YES AA_2 chr11 115104751 115104751 C T exonic Tmem104 synonymous SNV NM_001033393:c.C798T:p.P266P exonic Tmem104 synonymous SNV uc007mgv.2:c.C798T:p.P266P exonic ENSMUSG00000045980 synonymous SNV ENSMUST00000061450:c.C798T:p.P266P 11qE2 NA NA chr11 115104751 GCCxCTA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 349 0 0 27.138762 0.108333 0.02 2.72314 107 13 3142 388 60 60 0 0 CC 54.088376 180 0 4937 0 KEEP + Tmem104 NO AA_2 chr11 117630192 117630192 A T intronic Tmc6 NA NA intronic Tmc6 NA NA intronic ENSMUSG00000025572 NA NA 11qE2 NA NA chr11 117630192 CCGxGGG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 217 0 0 43.162605 0.24359 0.02 1.109488 59 19 1724 529 60 60 0 0 AA 34.271663 114 0 3125 0 KEEP - Tmc6 YES AA_2 chr11 117697155 117697155 A T intronic Afmid NA NA intronic "Afmid,Clast2" NA NA intronic ENSMUSG00000017718 NA NA 11qE2 NA NA chr11 117697155 TTCxGCA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036492 0.036766 0.99257 14 0 0 8.3246 0.5 0.02 -0.052622 3 3 88 87 60 60 0 0 AA 2.406497 8 0 226 0 KEEP + Afmid YES AA_2 chr11 119218165 119218165 A T exonic Slc26a11 nonsynonymous SNV NM_178743:c.A1T:p.M1L exonic Slc26a11 nonsynonymous SNV uc007mqm.1:c.A1T:p.M1L exonic ENSMUSG00000039908 nonsynonymous SNV ENSMUST00000050880:c.A1T:p.M1L 11qE2 NA NA chr11 119218165 CACxTGG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 52 1 0 24.108023 0.391304 0.02 -0.201711 14 9 400 265 60 60 0 0 AA 6.916465 23 0 620 0 KEEP + Slc26a11 YES AA_2 chr11 21228850 21228850 C A intronic Ugp2 NA NA intronic Ugp2 NA NA intronic ENSMUSG00000001891 NA NA 11qA3.1 NA NA chr11 21228850 TCTxCAA C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.550947 0.552887 0.99649 41 0 0 25.362111 0.4 0.02 -0.219251 15 10 445 279 60 60 0 0 CC 4.51188 15 0 421 0 KEEP - Ugp2 NO AA_2 chr11 34263897 34263897 A T intronic "Dock2,Fam196b" NA NA intronic "Dock2,Fam196b" NA NA exonic ENSMUSG00000020143 nonsynonymous SNV ENSMUST00000101364:c.T678A:p.H226Q 11qA4 NA NA chr11 34263897 GCTxTGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.457751 0.457757 0.999988 57 0 0 8.880522 0.181818 0.02 -0.192916 18 4 497 115 60 60 0 0 AA 8.119129 27 0 719 0 KEEP - Dock2 YES AA_2 chr11 3575806 3575806 A T intronic Morc2a NA NA intronic Morc2a NA NA intronic ENSMUSG00000034543 NA NA 11qA1 NA NA chr11 3575806 TGCxTAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 93 0 0 46.4079 0.592593 0.02 -0.236752 11 16 303 467 60 60 0 0 AA 16.541295 55 0 1496 0 KEEP + Morc2a YES AA_2 chr11 4639094 4639094 C G intronic Cabp7 NA NA intronic Cabp7 NA NA intronic ENSMUSG00000009075 NA NA 11qA1 NA NA chr11 4639094 GTGxCCA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.259157 0.260965 0.993072 31 0 0 9.80174 0.25 0.02 -0.140323 12 4 349 118 60 60 0 0 CC 3.308731 11 0 307 0 KEEP - Cabp7 NO AA_2 chr11 4839953 4839953 C T exonic Nefh nonsynonymous SNV NM_010904:c.G2668A:p.V890M exonic Nefh nonsynonymous SNV uc007hvm.1:c.G2668A:p.V890M exonic ENSMUSG00000020396 nonsynonymous SNV ENSMUST00000093369:c.G2668A:p.V890M 11qA1 NA NA chr11 4839953 TCAxAGG C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 337 0 0 52.985205 0.181159 0.02 1.984465 113 25 3288 694 60 60 0 0 CC 46.911756 156 0 4334 0 KEEP - Nefh NO AA_2 chr11 48884388 48884388 G C intronic Olfr56 NA NA intronic Olfr56 NA NA ncRNA_exonic ENSMUSG00000083178 NA NA 11qB1.2 "Score=0.929308;Name=No.12938,chr11:48724729" NA chr11 48884388 TCAxTGG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 208 2 1 73.63614 0.368421 0.02 1.225637 48 28 1406 820 60 60 0 0 GG 31.570821 105 0 2935 0 KEEP + Olfr56 NO AA_2 chr11 49643416 49643416 A T intronic Gfpt2 NA NA intronic Gfpt2 NA NA intronic ENSMUSG00000020363 NA NA 11qB1.2 NA NA chr11 49643416 CACxGTC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 104 0 0 36.021507 0.358974 0.02 -0.350807 25 14 736 404 60 60 0 0 AA 14.437588 48 0 1333 0 KEEP + Gfpt2 YES AA_2 chr11 51130389 51130389 T A intronic Col23a1 NA NA intronic Col23a1 NA NA intronic ENSMUSG00000063564 NA NA 11qB1.3 NA NA chr11 51130389 TTCxCGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 128 2 0 22.193284 0.310345 0.02 -0.254344 20 9 596 257 60 60 0 0 TT 21.957633 73 0 2044 0 KEEP + Col23a1 YES AA_2 chr11 51378269 51378269 A T exonic Col23a1 synonymous SNV NM_153393:c.A777T:p.R259R exonic Col23a1 synonymous SNV uc007itv.2:c.A771T:p.R257R exonic ENSMUSG00000063564 synonymous SNV ENSMUST00000102765:c.A777T:p.R259R 11qB1.3 NA NA chr11 51378269 CCGxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 116 0 0 55.083037 0.428571 0.02 -0.438506 28 21 825 596 60 60 0 0 AA 13.834804 46 0 1266 0 KEEP + Col23a1 YES AA_2 chr11 58236373 58236373 A C exonic 1810065E05Rik nonsynonymous SNV NM_027239:c.A324C:p.Q108H exonic 1810065E05Rik nonsynonymous SNV uc007jbl.1:c.A324C:p.Q108H exonic ENSMUSG00000013653 nonsynonymous SNV ENSMUST00000013797:c.A324C:p.Q108H 11qB1.3 NA NA chr11 58236373 TCAxGTG A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 238 0 0 14.583328 0.101266 0.02 1.002382 71 8 2085 220 60 60 0 0 AA 36.096065 120 0 3369 0 KEEP + 1810065E05Rik NO AA_2 chr11 59142148 59142148 G C exonic Wnt9a nonsynonymous SNV NM_139298:c.G497C:p.G166A exonic Wnt9a nonsynonymous SNV uc007jdq.1:c.G497C:p.G166A exonic ENSMUSG00000000126 nonsynonymous SNV ENSMUST00000000128:c.G497C:p.G166A 11qB1.3 NA NA chr11 59142148 GGGxCGG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 158 0 0 18.863249 0.123288 0.02 1.153308 64 9 1875 264 60 60 0 1 GG 19.534441 65 0 1778 0 KEEP + Wnt9a NO AA_2 chr11 59666291 59666291 A T splicing Nt5m(NM_134029:exon2:c.244-2A>T) NA NA splicing Nt5m(uc007jfd.1:exon2:c.244-2A>T) NA NA splicing ENSMUSG00000032615(ENSMUST00000102695:exon2:c.244-2A>T) NA NA 11qB1.3 NA NA chr11 59666291 CTCxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 180 3 0 74.377161 0.394366 0.02 1.269492 43 28 1253 817 60 60 0 0 AA 25.261277 84 0 2280 0 KEEP + Nt5m YES AA_2 chr11 6410373 6410373 G C exonic Myo1g nonsynonymous SNV NM_178440:c.C2177G:p.A726G exonic Myo1g nonsynonymous SNV uc007hyt.2:c.C2177G:p.A726G exonic ENSMUSG00000020437 nonsynonymous SNV ENSMUST00000003459:c.C2177G:p.A726G 11qA1 NA NA chr11 6410373 CAAxCCT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.194853 0.196312 0.99257 25 0 0 9.871232 0.285714 0.02 -0.122783 10 4 293 116 60 60 0 0 GG 2.406076 8 0 219 0 KEEP - Myo1g NO AA_2 chr11 67168303 67168303 T A intronic Myh13 NA NA intronic Myh13 NA NA intronic ENSMUSG00000060180 NA NA 11qB3 NA NA chr11 67168303 TGAxTGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 72 0 0 37.575597 0.466667 0.02 -0.263085 16 14 451 399 60 60 0 0 TT 10.827017 36 0 981 0 KEEP + Myh13 YES AA_2 chr11 69437048 69437048 A C exonic Sat2 nonsynonymous SNV NM_026991:c.A401C:p.K134T exonic Sat2 nonsynonymous SNV uc007jqs.1:c.A401C:p.K134T exonic ENSMUSG00000069835 nonsynonymous SNV ENSMUST00000108656:c.A401C:p.K134T 11qB3 NA NA chr11 69437048 ACAxGAA A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 67 0 0 7.465943 0.117647 0.02 -0.298181 30 4 875 109 60 60 0 0 AA 8.420754 28 0 773 0 KEEP + Sat2 NO AA_2 chr11 69793492 69793492 C G intronic Elp5 NA NA intronic "Derp6,Rai12" NA NA intronic ENSMUSG00000018565 NA NA 11qB3 NA NA chr11 69793492 GGGxTAA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 89 0 0 40.218789 0.390244 0.02 -0.368305 25 16 745 445 60 60 0 0 CC 12.030305 40 0 1118 0 KEEP - Elp5 NO AA_2 chr11 71876605 71876605 A T exonic Pitpnm3 nonsynonymous SNV NM_001081641:c.T1717A:p.L573M exonic Pitpnm3 nonsynonymous SNV uc007jyb.1:c.T1717A:p.L573M exonic ENSMUSG00000040543 nonsynonymous SNV ENSMUST00000108508:c.T1717A:p.L573M 11qB4 NA NA chr11 71876605 TCAxGAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.289872 0.292001 0.992708 29 0 0 38.067288 0.764706 0.02 -0.149071 4 13 117 359 60 60 0 0 AA 3.007918 10 0 279 0 KEEP - Pitpnm3 YES AA_2 chr11 71884009 71884009 A T intronic Pitpnm3 NA NA intronic Pitpnm3 NA NA intronic ENSMUSG00000040543 NA NA 11qB4 NA NA chr11 71884009 AGCxATC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16126 0.162467 0.99257 25 0 0 26.306104 0.692308 0.02 -0.114005 4 9 115 255 60 60 0 0 AA 2.406255 8 0 222 0 KEEP - Pitpnm3 YES AA_2 chr11 78341809 78341809 T A intronic Tnfaip1 NA NA intronic Tnfaip1 NA NA intronic ENSMUSG00000017615 NA NA 11qB5 NA NA chr11 78341809 CTGxGAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 202 2 0 159.461874 0.706667 0.02 1.234473 22 53 619 1539 60 60 0 0 TT 31.246133 104 0 2713 0 KEEP - Tnfaip1 YES AA_2 chr11 78761694 78761694 C T intronic Nos2 NA NA intronic Nos2 NA NA intronic ENSMUSG00000020826 NA NA 11qB5 NA NA chr11 78761694 CTCxATG C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 187 0 0 98.62447 0.402174 0.02 0.986662 55 37 1616 1079 60 60 0 0 CC 23.150266 77 0 2158 0 KEEP + Nos2 NO AA_2 chr11 81386820 81386820 T A exonic 1700071K01Rik nonsynonymous SNV NM_001033765:c.A156T:p.E52D exonic 1700071K01Rik nonsynonymous SNV uc007kmn.1:c.A156T:p.E52D ncRNA_exonic ENSMUSG00000080980 NA NA 11qB5 NA NA chr11 81386820 CCCxTCC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 256 0 0 58.283301 0.303797 0.02 1.10073 55 24 1601 679 60 60 0 0 TT 43.614354 145 0 4052 0 KEEP - 1700071K01Rik YES AA_2 chr11 84335221 84335221 T A exonic Lhx1 nonsynonymous SNV NM_008498:c.A647T:p.E216V exonic Lhx1 nonsynonymous SNV uc007kqo.1:c.A647T:p.E216V exonic ENSMUSG00000018698 nonsynonymous SNV ENSMUST00000018842:c.A647T:p.E216V 11qC NA NA chr11 84335221 GTCxCCT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 90 0 0 32.524034 0.333333 0.02 -0.341917 26 13 748 371 60 60 0 0 TT 12.633252 42 0 1173 0 KEEP - Lhx1 YES AA_2 chr11 87431456 87431456 G C intronic Hsf5 NA NA intronic Hsf5 NA NA intronic ENSMUSG00000070345 NA NA 11qC NA NA chr11 87431456 GCGxCAG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.320408 0.322807 0.99257 31 2 0 32.752324 0.647059 0.02 -0.157868 6 11 175 323 60 60 0 0 GG 2.40591 8 0 216 0 KEEP + Hsf5 NO AA_2 chr11 87588668 87588668 A T exonic Bzrap1 nonsynonymous SNV NM_172449:c.A2729T:p.Y910F exonic Bzrap1 nonsynonymous SNV uc007kum.2:c.A2729T:p.Y910F exonic ENSMUSG00000034156 nonsynonymous SNV ENSMUST00000100644:c.A2549T:p.Y850F 11qC NA NA chr11 87588668 TCTxCCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999997 91 0 0 97.071159 0.611111 0.02 1.319995 21 33 561 970 60 60 0 0 AA 9.019701 30 0 789 0 KEEP + Bzrap1 YES AA_2 chr11 87672049 87672049 A T intronic Mks1 NA NA UTR3 Mks1 NA NA intronic ENSMUSG00000034121 NA NA 11qC NA NA chr11 87672049 ACTxAAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.73962 0.739671 0.999931 64 0 0 58.344146 0.625 0.02 -0.280634 12 20 336 580 60 60 0 0 AA 7.518261 25 0 672 0 KEEP + Mks1 YES AA_2 chr11 91437503 91437503 A T exonic Kif2b nonsynonymous SNV NM_028547:c.T1267A:p.S423T exonic Kif2b nonsynonymous SNV uc007kxf.1:c.T1267A:p.S423T exonic ENSMUSG00000046755 nonsynonymous SNV ENSMUST00000061019:c.T1267A:p.S423T 11qD NA NA chr11 91437503 TGGxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 119 0 0 30.605276 0.25 0.02 1.33747 39 13 1155 371 60 60 0 0 AA 15.905618 53 0 1440 0 KEEP - Kif2b YES AA_2 chr11 9158424 9158424 T A intronic Abca13 NA NA intronic Abca13 NA NA intronic ENSMUSG00000004668 NA NA 11qA1 NA NA chr11 9158424 GACxACT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 96 0 0 32.548163 0.325 0.02 -0.350806 27 13 790 373 60 60 0 0 TT 14.737386 49 0 1349 0 KEEP + Abca13 YES AA_2 chr11 94225686 94225686 T A exonic Abcc3 nonsynonymous SNV NM_029600:c.A1847T:p.E616V exonic Abcc3 nonsynonymous SNV uc007kym.1:c.A1847T:p.E616V exonic ENSMUSG00000020865 nonsynonymous SNV ENSMUST00000021231:c.A1847T:p.E616V 11qD NA NA chr11 94225686 CTTxCCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 101 2 0 55.876533 0.645161 0.02 -0.271848 11 20 325 551 60 60 0 0 TT 15.907268 53 0 1459 0 KEEP - Abcc3 YES AA_2 chr11 96008850 96008850 A T exonic Ttll6 nonsynonymous SNV NM_172799:c.A1209T:p.R403S exonic Ttll6 nonsynonymous SNV uc011yde.1:c.A897T:p.R299S exonic ENSMUSG00000038756 nonsynonymous SNV ENSMUST00000107680:c.A897T:p.R299S 11qD NA NA chr11 96008850 GAGxCAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 150 0 0 42.904539 0.314815 0.02 1.32004 37 17 1026 494 60 60 0 0 AA 25.527367 85 0 2264 0 KEEP + Ttll6 YES AA_2 chr11 96132935 96132935 A T exonic Hoxb9 nonsynonymous SNV NM_008270:c.A80T:p.K27M exonic Hoxb9 nonsynonymous SNV uc007lbn.1:c.A80T:p.K27M exonic ENSMUSG00000020875 nonsynonymous SNV ENSMUST00000000010:c.A80T:p.K27M 11qD NA NA chr11 96132935 CCAxGTT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 56 0 0 13.023446 0.384615 0.02 -0.114012 8 5 233 144 60 60 0 0 AA 9.3241 31 0 864 0 KEEP + Hoxb9 YES AA_2 chr11 98688932 98688932 T C exonic Casc3 synonymous SNV NM_138660:c.T1503C:p.F501F exonic Casc3 synonymous SNV uc007lhq.1:c.T594C:p.F198F exonic ENSMUSG00000078676 synonymous SNV ENSMUST00000169695:c.T1503C:p.F501F 11qD NA NA chr11 98688932 GTTxAAC T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 155 0 0 19.647741 0.145161 0.02 1.348498 53 9 1488 265 60 60 0 0 TT 21.051729 70 0 1908 0 KEEP + Casc3 NO AA_2 chr11 99212098 99212098 T A exonic Krt27 nonsynonymous SNV NM_010666:c.A290T:p.E97V exonic Krt27 nonsynonymous SNV uc007lip.1:c.A290T:p.E97V exonic ENSMUSG00000017588 nonsynonymous SNV ENSMUST00000017732:c.A290T:p.E97V 11qD NA NA chr11 99212098 GCCxCCT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 208 2 0 73.809091 0.386667 0.02 1.136297 46 29 1309 817 60 60 0 0 TT 27.967163 93 0 2573 0 KEEP - Krt27 YES AA_2 chr12 104970842 104970842 T G intronic Serpina1b NA NA intronic Serpina1b NA NA intronic ENSMUSG00000071178 NA NA 12qE "Score=0.962888;Name=No.26207,chr12:104997775" NA chr12 104970842 TGGxGAC T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.734278 0.739671 0.992708 67 1 19 22.038321 0.28125 0.02 -0.280634 23 9 656 260 36 36 0 0 TT 6.008985 20 0 526 0 KEEP - Serpina1b NO AA_2 chr12 106385463 106385463 A T intronic Tcl1b2 NA NA intronic Tcl1b2 NA NA intronic ENSMUSG00000060863 NA NA 12qE "Score=0.910355;Name=No.26215,chr12:106365718" NA chr12 106385463 CAGxCAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 70 0 0 44.004161 0.484848 0.02 -0.289404 17 16 483 463 60 60 0 0 AA 9.021851 30 0 808 0 KEEP + Tcl1b2 YES AA_2 chr12 111818678 111818678 A T exonic Ppp2r5c nonsynonymous SNV NM_001081457:c.A1394T:p.H465L exonic Ppp2r5c nonsynonymous SNV uc007pbm.1:c.A1394T:p.H465L exonic ENSMUSG00000017843 nonsynonymous SNV ENSMUST00000109832:c.A1394T:p.H465L 12qF1 NA NA chr12 111818678 CCCxCAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 240 1 0 126.072027 0.5 0.02 1.10293 45 45 1262 1317 60 60 0 0 AA 33.977181 113 0 3009 0 KEEP + Ppp2r5c YES AA_2 chr12 112660387 112660387 A C exonic Exoc3l4 nonsynonymous SNV NM_028807:c.A98C:p.N33T exonic 1200009I06Rik nonsynonymous SNV uc011yuw.1:c.A98C:p.N33T exonic ENSMUSG00000021280 nonsynonymous SNV ENSMUST00000072646:c.A98C:p.N33T 12qF1 NA NA chr12 112660387 CCAxCAG A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 146 0 0 21.078795 0.144928 0.02 1.188423 59 10 1686 287 60 60 0 0 AA 19.549387 65 0 1781 0 KEEP + Exoc3l4 NO AA_2 chr12 113412992 113412992 A T exonic Kif26a stopgain SNV NM_001097621:c.A2017T:p.R673X exonic Kif26a stopgain SNV uc007pem.1:c.A2017T:p.R673X exonic ENSMUSG00000021294 stopgain SNV ENSMUST00000128402:c.A2017T:p.R673X 12qF1 NA NA chr12 113412992 CACxGAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 78 0 0 29.221368 0.407407 0.02 -0.236796 16 11 468 319 60 60 0 0 AA 10.525531 35 0 961 0 KEEP + Kif26a YES AA_2 chr12 114564742 114564742 A T intergenic "Tmem121(dist=137009),Adam6b(dist=163034)" NA NA ncRNA_UTR3 Ighg1 NA NA intergenic "ENSMUSG00000076613(dist=18598),ENSMUSG00000076614(dist=2445)" NA NA 12qF1 NA NA chr12 114564742 TACxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 114 0 0 72.745219 0.5 0.02 1.436141 26 26 760 760 60 60 0 0 AA 13.835339 46 0 1266 0 KEEP - Tmem121 YES AA_2 chr12 115307197 115307197 T G intergenic "Adam6a(dist=522572),Zfp386(dist=1978738)" NA NA ncRNA_intronic abParts NA NA exonic ENSMUSG00000076661 nonsynonymous SNV ENSMUST00000103470:c.A141C:p.E47D 12qF1 NA NA chr12 115307197 CCAxTCT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 89 0 0 21.516544 0.209302 0.02 -0.377093 34 9 957 268 60 60 0 0 TT 10.526561 35 0 958 0 KEEP - Adam6a NO AA_2 chr12 118079834 118079834 A T exonic Ptprn2 synonymous SNV NM_011215:c.A495T:p.T165T exonic "Ptprn2,mKIAA0387" synonymous SNV uc007phw.2:c.A495T:p.T165T exonic ENSMUSG00000056553 synonymous SNV ENSMUST00000070733:c.A495T:p.T165T 12qF2 NA NA chr12 118079834 AACxGCA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 343 2 0 141.640721 0.531915 0.02 1.067936 44 50 1269 1460 60 60 0 0 AA 57.726808 192 0 5286 0 KEEP + Ptprn2 YES AA_2 chr12 30605355 30605355 T A UTR3 Myt1l NA NA UTR3 Myt1l NA NA UTR3 ENSMUSG00000061911 NA NA 12qA2 NA NA chr12 30605355 TGCxCTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.291966 0.292001 0.999879 47 0 0 11.813067 0.294118 0.02 -0.149093 12 5 356 139 60 60 0 0 TT 6.601992 22 0 598 0 KEEP + Myt1l YES AA_2 chr12 32220785 32220785 G C intronic Slc26a4 NA NA intronic Slc26a4 NA NA intronic ENSMUSG00000020651 NA NA 12qA3 NA NA chr12 32220785 AAAxACA G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053885 0.054137 0.995343 25 0 0 22.928824 0.875 0.02 -0.070167 1 7 30 209 60 60 0 0 GG 4.211598 14 0 401 0 KEEP - Slc26a4 NO AA_2 chr12 3366596 3366596 A T exonic Kif3c nonsynonymous SNV NM_008445:c.A616T:p.S206C exonic Kif3c nonsynonymous SNV uc007mwm.1:c.A616T:p.S206C exonic ENSMUSG00000020668 nonsynonymous SNV ENSMUST00000020999:c.A616T:p.S206C 12qA1.1 NA NA chr12 3366596 GGCxGCA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 96 0 0 73.012021 0.595238 0.02 -0.36836 17 25 501 734 60 60 0 0 AA 13.521212 45 0 1222 0 KEEP + Kif3c YES AA_2 chr12 45638346 45638346 A T intronic Nrcam NA NA ncRNA_intronic NrCAM NA NA intronic ENSMUSG00000020598 NA NA 12qB3 NA NA chr12 45638346 GGTxAGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 54 4 0 37.250936 0.684211 0.02 -0.166615 6 13 172 362 60 60 0 0 AA 9.32309 31 0 855 0 KEEP + Nrcam YES AA_2 chr12 66327201 66327201 A C exonic Wdr20b synonymous SNV NM_027614:c.A450C:p.S150S exonic Wdr20b synonymous SNV uc007nrk.1:c.A450C:p.S150S exonic ENSMUSG00000035560 synonymous SNV ENSMUST00000046331:c.A450C:p.S150S 12qC1 "Score=0.952206;Name=No.25977,chr12:112031323" NA chr12 66327201 GTCxCGC A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 84 0 0 77.004359 0.684211 0.02 -0.333248 12 26 343 749 60 60 0 0 AA 12.004679 40 0 1041 0 KEEP + Wdr20b NO AA_2 chr12 7986131 7986131 A T exonic Apob nonsynonymous SNV NM_009693:c.A194T:p.Q65L exonic Apob nonsynonymous SNV uc007mzd.2:c.A191T:p.Q64L exonic ENSMUSG00000020609 nonsynonymous SNV ENSMUST00000037520:c.A155T:p.Q52L 12qA1.1 NA NA chr12 7986131 TCCxGGG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119538 0.120436 0.99254 21 0 0 17.170264 0.545455 0.02 -0.09647 5 6 142 176 60 60 0 0 AA 2.707118 9 0 251 0 KEEP + Apob YES AA_2 chr12 79910745 79910745 A G exonic Mpp5 nonsynonymous SNV NM_019579:c.A374G:p.E125G exonic Mpp5 nonsynonymous SNV uc007nzh.2:c.A374G:p.E125G exonic ENSMUSG00000021112 nonsynonymous SNV ENSMUST00000082024:c.A374G:p.E125G 12qC3 NA NA chr12 79910745 TTGxAGA A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 63 2 0 33.733504 0.631579 0.02 -0.16609 7 12 207 335 60 60 0 0 AA 10.200771 34 0 930 0 KEEP + Mpp5 NO AA_2 chr12 82300509 82300509 A T exonic Slc8a3 nonsynonymous SNV NM_001167920:c.T2735A:p.L912Q exonic Slc8a3 nonsynonymous SNV uc007obw.2:c.T2735A:p.L912Q exonic ENSMUSG00000079055 nonsynonymous SNV ENSMUST00000085238:c.T2735A:p.L912Q 12qD1 NA NA chr12 82300509 TCCxGCG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 114 0 0 70.248596 0.568182 0.02 -0.385833 19 25 557 714 60 60 0 0 AA 14.136367 47 0 1303 0 KEEP - Slc8a3 YES AA_2 chr12 83019748 83019748 A T exonic Pcnx synonymous SNV NM_018814:c.A1701T:p.T567T exonic Pcnx synonymous SNV uc007ocs.1:c.A267T:p.T89T exonic ENSMUSG00000021140 synonymous SNV ENSMUST00000021567:c.A1701T:p.T567T 12qD1 NA NA chr12 83019748 CACxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 78 1 0 70.611542 0.71875 0.02 -0.280652 9 23 259 679 60 60 0 0 AA 10.827935 36 0 995 0 KEEP + Pcnx YES AA_2 chr12 85358373 85358373 A T UTR3 Acot1 NA NA UTR3 Acot1 NA NA UTR3 ENSMUSG00000072949 NA NA 12qD1 NA NA chr12 85358373 TACxTTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 108 0 0 46.62407 0.459459 0.02 -0.324484 20 17 565 496 60 60 0 0 AA 16.84123 56 0 1510 0 KEEP + Acot1 YES AA_2 chr12 88858140 88858140 T A exonic Gm8300 nonsynonymous SNV NM_001177565:c.T294A:p.D98E exonic Gm8300 nonsynonymous SNV uc011ypn.1:c.T294A:p.D98E exonic ENSMUSG00000079034 nonsynonymous SNV ENSMUST00000110152:c.T294A:p.D98E 12qD2 "Score=0.964934;Name=No.26049,chr12:89137957" NA chr12 88858140 AGAxGAA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 503 5 163 25.228208 0.131868 0.02 0.987042 79 12 2227 349 57 27 0 0 TT 96.801866 322 0 8672 0 KEEP + Gm8300 YES AA_2 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 266 6 84 13.142236 0.0875 0.02 0.976048 73 7 2151 201 55 29 0 0 CC 42.407478 141 0 3985 0 KEEP - Gm2042 NO AA_2 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 322 7 80 34.437416 0.204545 0.02 1.004389 70 18 1978 452 60 37 0 0 TT 52.605102 175 0 4658 0 KEEP - Gm2042 NO AA_2 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 301 7 37 51.006277 0.235955 0.02 1.094125 68 21 1937 621 60 57 0 0 TT 54.737132 182 0 4974 0 KEEP - Gm2042 NO AA_2 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 99 2 5 11.059815 0.142857 0.02 -0.306357 30 5 845 149 60 29 0 0 CC 13.23384 44 0 1211 0 KEEP - Gm2042 NO AA_2 chr13 101214107 101214107 A T intronic Naip1 NA NA intronic "Naip1,Naip5" NA NA intronic ENSMUSG00000021640 NA NA 13qD1 "Score=0.976827;Name=No.34883,chr13:101015044" NA chr13 101214107 CACxAAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 298 0 5 31.814707 0.133929 0.02 2.596035 97 15 2807 438 57 29 0 0 AA 50.798934 169 0 4567 0 KEEP - Naip1 YES AA_2 chr13 103527208 103527208 T A exonic Mast4 nonsynonymous SNV NM_175171:c.A5731T:p.T1911S exonic Mast4 nonsynonymous SNV uc007rsb.2:c.A5731T:p.T1911S exonic ENSMUSG00000034751 nonsynonymous SNV ENSMUST00000171791:c.A5155T:p.T1719S 13qD1 NA NA chr13 103527208 CTGxGAC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 226 0 0 69.545527 0.325301 0.02 1.065626 56 27 1596 794 60 60 0 0 TT 34.829982 116 0 3063 0 KEEP - Mast4 YES AA_2 chr13 11687632 11687632 A T exonic Ryr2 nonsynonymous SNV NM_023868:c.T12574A:p.C4192S exonic Ryr2 nonsynonymous SNV uc007pld.1:c.T12574A:p.C4192S exonic ENSMUSG00000021313 nonsynonymous SNV ENSMUST00000021750:c.T12574A:p.C4192S 13qA1 NA NA chr13 11687632 CACxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 234 2 0 105.171732 0.5 0.02 1.144504 37 37 1091 1098 60 60 0 0 AA 40.904333 136 0 3752 0 KEEP - Ryr2 YES AA_2 chr13 11797980 11797980 T G exonic Ryr2 nonsynonymous SNV NM_023868:c.A8048C:p.N2683T exonic Ryr2 nonsynonymous SNV uc007pld.1:c.A8048C:p.N2683T exonic ENSMUSG00000021313 nonsynonymous SNV ENSMUST00000021750:c.A8048C:p.N2683T 13qA1 NA NA chr13 11797980 TAGxTTG T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 49 0 0 22.234741 0.428571 0.02 -0.18372 12 9 326 242 60 60 0 0 TT 6.917417 23 0 629 0 KEEP - Ryr2 NO AA_2 chr13 118053205 118053205 C T exonic Emb nonsynonymous SNV NM_010330:c.C482T:p.P161L exonic Emb nonsynonymous SNV uc007rym.2:c.C482T:p.P161L exonic ENSMUSG00000021728 nonsynonymous SNV ENSMUST00000022242:c.C482T:p.P161L 13qD2.3 NA NA chr13 118053205 TACxCAA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 72 1 0 13.6455 0.416667 0.02 -0.105248 7 5 207 148 60 60 0 0 CC 12.926773 43 0 1188 0 KEEP + Emb NO AA_2 chr13 17864490 17864490 T A exonic Cdk13 nonsynonymous SNV NM_001081058:c.A1516T:p.S506C exonic Cdk13 nonsynonymous SNV uc007poc.2:c.A1516T:p.S506C exonic ENSMUSG00000041297 nonsynonymous SNV ENSMUST00000042365:c.A1516T:p.S506C 13qA2 NA NA chr13 17864490 CACxGGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 109 1 0 38.309697 0.424242 0.02 -0.289421 19 14 552 414 60 60 0 0 TT 17.744794 59 0 1632 0 KEEP - Cdk13 YES AA_2 chr13 20692002 20692002 T A intronic Elmo1 NA NA intronic Elmo1 NA NA intronic ENSMUSG00000041112 NA NA 13qA2 NA NA chr13 20692002 AGCxCAC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 146 0 0 44.527362 0.305085 0.02 1.276079 41 18 1213 517 60 60 0 0 TT 21.958354 73 0 2048 0 KEEP + Elmo1 YES AA_2 chr13 21096980 21096980 T G exonic Aoah nonsynonymous SNV NM_012054:c.T1503G:p.D501E exonic Aoah nonsynonymous SNV uc007ppu.1:c.T1503G:p.D501E exonic ENSMUSG00000021322 nonsynonymous SNV ENSMUST00000021757:c.T1503G:p.D501E 13qA2 NA NA chr13 21096980 GGAxTTT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 87 0 0 19.79994 0.275862 0.02 -0.254322 21 8 600 234 60 60 0 0 TT 14.400755 48 0 1292 0 KEEP + Aoah NO AA_2 chr13 22101250 22101250 T A intronic Prss16 NA NA intronic Prss16 NA NA intronic ENSMUSG00000006179 NA NA 13qA3.1 NA NA chr13 22101250 TACxCGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 71 0 0 11.082099 0.178571 0.02 -0.245576 23 5 682 144 60 60 0 0 TT 9.624396 32 0 890 0 KEEP - Prss16 YES AA_2 chr13 23552379 23552379 A G exonic Btn1a1 nonsynonymous SNV NM_013483:c.T817C:p.Y273H exonic Btn1a1 nonsynonymous SNV uc007ptq.2:c.T814C:p.Y272H exonic ENSMUSG00000000706 nonsynonymous SNV ENSMUST00000041674:c.T817C:p.Y273H 13qA3.1 NA NA chr13 23552379 TGTxTAG A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 64 0 0 11.2664 0.227273 0.02 -0.192923 17 5 476 140 60 60 0 0 AA 10.224861 34 0 915 0 KEEP - Btn1a1 NO AA_2 chr13 23790122 23790122 A T exonic Hist1h4c nonsynonymous SNV NM_178208:c.T197A:p.V66E exonic Hist1h4c nonsynonymous SNV uc007puo.1:c.T197A:p.V66E exonic ENSMUSG00000060678 nonsynonymous SNV ENSMUST00000102967:c.T197A:p.V66E 13qA3.1 NA NA chr13 23790122 ATCxCGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 122 0 30 23.610926 0.346154 0.02 -0.228015 17 9 481 266 52 29 0 0 AA 17.739395 59 0 1562 0 KEEP - Hist1h4c YES AA_2 chr13 40816747 40816747 A T exonic Tfap2a synonymous SNV NM_001122948:c.T756A:p.S252S exonic Tcfap2a synonymous SNV uc007qei.1:c.T861A:p.S287S exonic ENSMUSG00000021359 synonymous SNV ENSMUST00000110192:c.T339A:p.S113S 13qA3.3 NA NA chr13 40816747 CTTxGAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 64 0 0 40.189444 0.608696 0.02 -0.201712 9 14 266 402 60 60 0 0 AA 11.430473 38 0 1068 0 KEEP - Tfap2a YES AA_2 chr13 49166197 49166197 A T exonic Wnk2 nonsynonymous SNV NM_029361:c.T3482A:p.M1161K exonic Wnk2 nonsynonymous SNV uc007qir.2:c.T1100A:p.M367K exonic ENSMUSG00000037989 nonsynonymous SNV ENSMUST00000160087:c.T908A:p.M303K 13qA5 NA NA chr13 49166197 ACCxTCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 163 1 0 88.140758 0.516667 0.02 1.366001 29 31 817 914 60 60 0 0 AA 27.922037 93 0 2485 0 KEEP - Wnk2 YES AA_2 chr13 50343609 50343609 T A exonic Gm906 nonsynonymous SNV NM_001033438:c.A269T:p.E90V exonic Gm906 nonsynonymous SNV uc007qka.1:c.A269T:p.E90V exonic ENSMUSG00000074904 nonsynonymous SNV ENSMUST00000099521:c.A269T:p.E90V 13qA5 "Score=0.980643;Name=No.32831,chr13:50757826" NA chr13 50343609 GTCxCTT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 154 0 11 40.621751 0.5 0.02 -0.263105 15 15 447 425 46 46 0 0 TT 27.372481 91 0 2552 0 KEEP - Gm906 YES AA_2 chr13 50740007 50740007 A T intronic Gm904 NA NA intronic Gm904 NA NA intronic ENSMUSG00000074902 NA NA 13qA5 "Score=0.981096;Name=No.32792,chr13:50188950" NA chr13 50740007 ACCxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 75 2 0 24.865076 0.428571 0.02 -0.184183 12 9 352 268 60 60 0 0 AA 13.233967 44 0 1212 0 KEEP + Gm904 YES AA_2 chr13 54783990 54783990 G A exonic Rnf44 nonsynonymous SNV NM_001146025:c.C877T:p.P293S exonic Rnf44 nonsynonymous SNV uc007qot.2:c.C631T:p.P211S exonic ENSMUSG00000034928 nonsynonymous SNV ENSMUST00000037422:c.C631T:p.P211S 13qB1 NA NA chr13 54783990 GTGxGGG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.800133 0.800245 0.99986 58 0 0 21.430666 0.257143 0.02 -0.306948 26 9 760 258 60 60 0 0 GG 5.712814 19 0 509 0 KEEP - Rnf44 NO AA_2 chr13 56644422 56644422 A T intronic Lect2 NA NA intronic Lect2 NA NA intronic ENSMUSG00000021539 NA NA 13qB1 NA NA chr13 56644422 GGTxGAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 117 2 0 73.071414 0.553191 0.02 -0.412101 21 26 600 747 60 60 0 0 AA 18.647084 62 0 1720 0 KEEP - Lect2 YES AA_2 chr13 58425213 58425213 C G exonic Kif27 nonsynonymous SNV NM_175214:c.G2421C:p.M807I exonic Kif27 nonsynonymous SNV uc011zao.1:c.G1032C:p.M344I exonic ENSMUSG00000060176 nonsynonymous SNV ENSMUST00000043605:c.G2421C:p.M807I 13qB1 NA NA chr13 58425213 ATCxATC C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 157 2 0 41.784129 0.310345 0.02 1.284918 40 18 1188 488 60 60 0 0 CC 22.234945 74 0 2063 0 KEEP - Kif27 NO AA_2 chr13 59818518 59818518 T A exonic Spata31d1b nonsynonymous SNV NM_001167593:c.T2118A:p.F706L exonic Gm4934 nonsynonymous SNV uc007qva.1:c.T2118A:p.F706L exonic ENSMUSG00000091311 nonsynonymous SNV ENSMUST00000165133:c.T2118A:p.F706L 13qB2 NA NA chr13 59818518 CTTxCAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.999859 32 0 0 12.993343 0.454545 0.02 -0.096452 6 5 168 139 60 60 0 0 TT 5.387395 18 0 474 0 KEEP + Spata31d1b YES AA_2 chr13 61262554 61262554 T G exonic Ctsr synonymous SNV NM_020284:c.A747C:p.G249G exonic Ctsr synonymous SNV uc007qwe.1:c.A747C:p.G249G exonic ENSMUSG00000055679 synonymous SNV ENSMUST00000021889:c.A747C:p.G249G 13qB2 NA NA chr13 61262554 AATxCCA T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 56 0 0 9.931229 0.266667 0.02 -0.131555 11 4 320 118 60 60 0 0 TT 8.696556 29 0 788 0 KEEP - Ctsr NO AA_2 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 171 0 2 20.359528 1 0.02 -0.087704 0 6 0 175 0 29 0 0 CC 38.806443 129 0 3718 0 KEEP NA BC052688 NO AA_2 chr13 62489262 62489262 C G intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "ENSMUSG00000089002(dist=2850),ENSMUSG00000055228(dist=66421)" NA NA 13qB3 "Score=0.952824;Name=No.33007,chr13:61865461" NA chr13 62489262 TGTxCAA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 252 0 1 12.156484 0.088235 0.02 1.278246 62 6 1842 181 60 36 0 0 CC 41.211337 137 0 3888 0 KEEP NA Gm3604 NO AA_2 chr13 63134506 63134506 A T exonic 2010111I01Rik nonsynonymous SNV NM_028079:c.A921T:p.L307F exonic 2010111I01Rik nonsynonymous SNV uc007qxi.1:c.A921T:p.L307F exonic ENSMUSG00000021458 nonsynonymous SNV ENSMUST00000021911:c.A921T:p.L307F 13qB3 NA NA chr13 63134506 TTTxATG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 72 0 0 19.811019 0.32 0.02 -0.219243 17 8 485 228 60 60 0 0 AA 11.429445 38 0 1050 0 KEEP + 2010111I01Rik YES AA_2 chr13 65442544 65442544 C A intergenic "Zfp369(dist=43441),Gm10324(dist=771845)" NA NA intergenic "Zfp369(dist=43441),AK145544(dist=57746)" NA NA intergenic "ENSMUSG00000021514(dist=37015),ENSMUSG00000090514(dist=38157)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442544 AACxTTT C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 95 4 24 7.00113 0.25 0.02 -0.131563 9 3 274 85 29 20 0 0 CC 20.154559 67 0 1920 0 KEEP NA Zfp369 NO AA_2 chr13 67396687 67396687 G A exonic Zfp457 synonymous SNV NM_001003666:c.C225T:p.H75H exonic Zfp457 synonymous SNV uc007ran.1:c.C225T:p.H75H exonic ENSMUSG00000055341 synonymous SNV ENSMUST00000049705:c.C225T:p.H75H 13qB3 NA NA chr13 67396687 TGGxTGC G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 204 1 19 7.966066 0.1 0.02 -0.350824 36 4 1065 117 60 29 0 0 GG 33.080977 110 0 3055 0 KEEP - Zfp457 NO AA_2 chr13 73812995 73812995 A G intronic Slc6a18 NA NA ncRNA_intronic Xtrp2 NA NA intronic ENSMUSG00000021612 NA NA 13qC1 NA NA chr13 73812995 ATGxGTG A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999859 29 0 0 7.643453 0.333333 0.02 -0.078931 6 3 174 87 60 60 0 0 AA 5.414427 18 0 505 0 KEEP - Slc6a18 NO AA_2 chr13 74055907 74055907 T A exonic Trip13 synonymous SNV NM_027182:c.A972T:p.A324A exonic Trip13 synonymous SNV uc011zbt.1:c.A279T:p.A93A exonic ENSMUSG00000021569 synonymous SNV ENSMUST00000022053:c.A972T:p.A324A 13qC1 NA NA chr13 74055907 TGCxGCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 58 0 0 21.15582 0.380952 0.02 -0.184178 13 8 381 234 60 60 0 0 TT 9.022067 30 0 823 0 KEEP - Trip13 YES AA_2 chr13 81558144 81558144 C T exonic Gpr98 nonsynonymous SNV NM_054053:c.G15908A:p.R5303H exonic "Gpr98,Vlgr1" nonsynonymous SNV uc011zcf.1:c.G1421A:p.R474H exonic ENSMUSG00000069170 nonsynonymous SNV ENSMUST00000095585:c.G15908A:p.R5303H 13qC3 NA NA chr13 81558144 TTAxGTT C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 110 0 0 64.062834 0.560976 0.02 -0.359477 18 23 471 653 60 60 0 0 CC 17.710759 59 0 1456 0 KEEP - Gpr98 NO AA_2 chr13 8569360 8569360 T A exonic Adarb2 nonsynonymous SNV NM_052977:c.T635A:p.F212Y exonic Adarb2 nonsynonymous SNV uc007pkf.1:c.T635A:p.F212Y exonic ENSMUSG00000052551 nonsynonymous SNV ENSMUST00000165942:c.T536A:p.F179Y 13qA1 NA NA chr13 8569360 ACTxCAC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 152 0 0 39.425114 0.288136 0.02 1.17781 42 17 1234 467 60 60 0 0 TT 19.549302 65 0 1801 0 KEEP + Adarb2 YES AA_2 chr13 90244049 90244049 A T exonic Tmem167 stoploss SNV NM_025335:c.A218T:p.X73L exonic Tmem167 stoploss SNV uc007rjo.2:c.A218T:p.X73L exonic ENSMUSG00000012422 stoploss SNV ENSMUST00000161568:c.A218T:p.X73L 13qC3 NA NA chr13 90244049 AGTxGCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 83 0 0 11.411159 0.181818 0.02 -0.288689 27 6 790 153 60 60 0 0 AA 11.128621 37 0 1022 0 KEEP + Tmem167 YES AA_2 chr13 97919329 97919329 C T exonic Gfm2 stopgain SNV NM_001146043:c.C370T:p.Q124X exonic Gfm2 stopgain SNV uc007rnu.2:c.C370T:p.Q124X exonic ENSMUSG00000021666 stopgain SNV ENSMUST00000022170:c.C364T:p.Q122X 13qD1 NA NA chr13 97919329 ATCxAGT C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 1 58 2 0 22.662487 0.571429 0.02 -0.122783 6 8 178 230 60 60 0 0 CC 11.130462 37 0 1056 0 KEEP + Gfm2 NO AA_2 chr13 97932976 97932976 A T intronic Gfm2 NA NA intronic Gfm2 NA NA intronic ENSMUSG00000021666 NA NA 13qD1 NA NA chr13 97932976 TAAxACT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 78 0 0 25.446528 0.384615 0.02 -0.228019 16 10 466 282 60 60 0 0 AA 14.437059 48 0 1332 0 KEEP + Gfm2 YES AA_2 chr13 99630645 99630645 T A exonic Tnpo1 nonsynonymous SNV NM_001048267:c.A1230T:p.E410D exonic Tnpo1 nonsynonymous SNV uc007rpg.1:c.A603T:p.E201D exonic ENSMUSG00000009470 nonsynonymous SNV ENSMUST00000109399:c.A1230T:p.E410D 13qD1 NA NA chr13 99630645 CCAxTCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 211 0 0 91.429887 0.532258 0.02 1.249808 29 33 826 943 60 60 0 0 TT 34.567103 115 0 3131 0 KEEP - Tnpo1 YES AA_2 chr14 118442447 118442447 T A exonic Dct synonymous SNV NM_010024:c.A378T:p.L126L exonic Dct synonymous SNV uc007uym.2:c.A378T:p.L126L exonic ENSMUSG00000022129 synonymous SNV ENSMUST00000022725:c.A378T:p.L126L 14qE4 NA NA chr14 118442447 TCTxAGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120175 0.120436 0.997832 30 0 0 7.132599 0.272727 0.02 -0.096463 8 3 225 85 60 60 0 0 TT 4.81032 16 0 426 0 KEEP - Dct YES AA_2 chr14 122057998 122057998 G A exonic Dock9 synonymous SNV NM_001081039:c.C510T:p.G170G exonic Dock9 synonymous SNV uc007vah.2:c.C510T:p.G170G exonic ENSMUSG00000025558 synonymous SNV ENSMUST00000040700:c.C510T:p.G170G 14qE5 NA NA chr14 122057998 CCCxCCC G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 62 0 0 33.578184 0.6 0.02 -0.175357 8 12 212 337 60 60 0 0 GG 9.016388 30 0 766 0 KEEP - Dock9 NO AA_2 chr14 123372532 123372532 T A intronic Tmtc4 NA NA intronic Tmtc4 NA NA intronic ENSMUSG00000041594 NA NA 14qE5 NA NA chr14 123372532 TTCxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 65 2 0 37.861583 0.565217 0.02 -0.201725 10 13 296 385 60 60 0 0 TT 9.322978 31 0 848 0 KEEP - Tmtc4 YES AA_2 chr14 26471509 26471509 G C intronic Zmiz1 NA NA intronic Zmiz1 NA NA intronic ENSMUSG00000007817 NA NA 14qA3 NA NA chr14 26471509 CGGxCTC G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 117 0 0 94.370804 0.673913 0.02 -0.412217 15 31 437 922 60 60 0 0 GG 17.429187 58 0 1550 0 KEEP + Zmiz1 NO AA_2 chr14 31960810 31960810 A C intronic Stab1 NA NA intronic Stab1 NA NA intronic ENSMUSG00000042286 NA NA 14qB NA NA chr14 31960810 AGAxGTT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 109 0 0 28.715114 0.309524 0.02 -0.368295 29 13 849 338 60 60 0 0 AA 19.240755 64 0 1758 0 KEEP - Stab1 NO AA_2 chr14 41996224 41996224 A T splicing Sftpd(NM_009160:exon3:c.196+2T>A) NA NA splicing Sftpd(uc007tcr.2:exon3:c.196+2T>A) NA NA splicing ENSMUSG00000021795(ENSMUST00000077136:exon3:c.196+2T>A) NA NA 14qB NA NA chr14 41996224 CTTxCCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 226 0 0 40.845392 0.239437 0.02 1.171048 54 17 1464 497 60 60 0 0 AA 34.87597 116 0 3067 0 KEEP - Sftpd YES AA_2 chr14 4359832 4359832 C G intergenic "Gm5796(dist=215430),Gm3264(dist=174199)" NA NA intronic Gm2897 NA NA intronic ENSMUSG00000091114 NA NA 14qA1 "Score=0.982458;Name=No.44481,chr14:5408875" NA chr14 4359832 GAGxTCT C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 129 0 14 13.945143 0.2 0.02 -0.263112 24 6 702 176 54 32 0 0 CT 15.611914 52 0 1399 0 KEEP + Gm5796 NO AA_2 chr14 4359870 4359870 C A intergenic "Gm5796(dist=215468),Gm3264(dist=174161)" NA NA intronic Gm2897 NA NA intronic ENSMUSG00000091114 NA NA 14qA1 "Score=0.982458;Name=No.44481,chr14:5408875" NA chr14 4359870 TACxAGG C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 107 0 16 8.563281 0.153846 0.02 -0.228036 22 4 654 115 54 32 0 0 CC 18.349611 61 0 1728 0 KEEP + Gm5796 NO AA_2 chr14 47893644 47893644 T A exonic Wdhd1 synonymous SNV NM_172598:c.A285T:p.T95T exonic Wdhd1 synonymous SNV uc007thu.2:c.A285T:p.T95T exonic ENSMUSG00000037572 synonymous SNV ENSMUST00000095945:c.A285T:p.T95T 14qC1 NA NA chr14 47893644 ATTxGTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 77 0 0 27.531818 0.434783 0.02 -0.201719 13 10 377 296 60 60 0 0 TT 12.632062 42 0 1151 0 KEEP - Wdhd1 YES AA_2 chr14 51512390 51512390 G A exonic Klhl33 nonsynonymous SNV NM_001166651:c.C541T:p.P181S exonic Klhl33 nonsynonymous SNV uc011zjz.1:c.C541T:p.P181S exonic ENSMUSG00000090799 nonsynonymous SNV ENSMUST00000164415:c.C541T:p.P181S 14qC1 NA NA chr14 51512390 GGGxGAG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 162 1 0 89.863397 0.584906 0.02 1.427374 22 31 637 907 60 60 0 0 GG 26.414578 88 0 2332 0 KEEP - Klhl33 NO AA_2 chr14 52032928 52032928 C A exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C422A:p.A141D exonic "Vmn2r-ps160,Vmn2r88" nonsynonymous SNV uc009vao.1:c.C422A:p.A141D exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000022438:c.C422A:p.A141D 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032928 GTGxCAT C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 170 3 2 7.851813 0.088889 0.02 1.339653 41 4 1202 118 60 29 0 0 CC 28.874457 96 0 2654 0 KEEP + Vmn2r88 NO AA_2 chr14 52032935 52032935 T C exonic Vmn2r88 synonymous SNV NM_011686:c.T429C:p.G143G exonic "Vmn2r-ps160,Vmn2r88" synonymous SNV uc009vao.1:c.T429C:p.G143G exonic ENSMUSG00000000606 synonymous SNV ENSMUST00000022438:c.T429C:p.G143G 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032935 AGGxCTT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 177 4 3 26.330259 0.229167 0.02 1.241012 37 11 1076 323 60 60 0 0 TT 30.046655 100 0 2713 0 KEEP + Vmn2r88 NO AA_2 chr14 52036477 52036477 C T exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C1640T:p.P547L exonic Vmn2r88 nonsynonymous SNV uc009vao.1:c.C1640T:p.P547L exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000159674:c.C1481T:p.P494L 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52036477 GCCxAGA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 461 23 12 38.58959 0.173469 0.02 2.63166 81 17 2353 501 60 60 0 0 CC 86.019164 286 0 8140 0 KEEP + Vmn2r88 NO AA_2 chr14 56999682 56999682 C A exonic Atp12a nonsynonymous SNV NM_138652:c.C1952A:p.T651K exonic Atp12a nonsynonymous SNV uc007ubw.2:c.C1952A:p.T651K exonic ENSMUSG00000022229 nonsynonymous SNV ENSMUST00000007340:c.C1952A:p.T651K 14qC3 NA NA chr14 56999682 AGAxGGT C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 115 0 0 23.001905 0.290323 0.02 -0.270989 22 9 519 268 60 60 0 0 CC 18.416684 66 1 1547 12 KEEP + Atp12a NO AA_2 chr14 6030001 6030001 T A intergenic "Gm3383(dist=96448),Gm3494(dist=421733)" NA NA intronic "Gm10406,Gm2897" NA NA ncRNA_intronic ENSMUSG00000079379 NA NA 14qA1 "Score=0.969741;Name=No.48046,chr14:7901918" NA chr14 6030001 CTCxGAT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 891 21 242 46.012929 0.204082 0.02 0.916488 78 20 2296 580 60 34 0 0 TT 187.069087 622 0 17266 0 KEEP - Gm3383 YES AA_2 chr14 60310372 60310372 A T exonic Atp8a2 synonymous SNV NM_015803:c.T3069A:p.T1023T exonic Atp8a2 synonymous SNV uc007uet.1:c.T3069A:p.T1023T exonic ENSMUSG00000021983 synonymous SNV ENSMUST00000080368:c.T3069A:p.T1023T 14qD1 NA NA chr14 60310372 CATxGTT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 82 0 0 19.037591 0.466667 0.02 -0.131555 8 7 236 202 60 60 0 0 AA 16.241951 54 0 1499 0 KEEP - Atp8a2 YES AA_2 chr14 61328264 61328264 A T exonic Spata13 synonymous SNV NM_001033272:c.A1923T:p.P641P exonic Spata13 synonymous SNV uc007ufc.2:c.A1923T:p.P641P exonic ENSMUSG00000021990 synonymous SNV ENSMUST00000022566:c.A1923T:p.P641P 14qD1 NA NA chr14 61328264 GCCxGCA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 164 2 0 24.08453 0.243902 0.02 -0.359374 31 10 883 292 60 60 0 0 AA 27.357967 91 0 2489 0 KEEP + Spata13 YES AA_2 chr14 63822466 63822466 T A intronic Gata4 NA NA intronic Gata4 NA NA intronic ENSMUSG00000021944 NA NA 14qD1 NA NA chr14 63822466 GCAxAGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490476 0.490544 0.99986 48 0 0 23.117482 0.391304 0.02 -0.201367 14 9 373 255 60 60 0 0 TT 5.713662 19 0 508 0 KEEP - Gata4 YES AA_2 chr14 70009009 70009009 T G upstream Loxl2 NA NA ncRNA_UTR5 Loxl2 NA NA ncRNA_UTR5 ENSMUSG00000034205 NA NA 14qD2 NA NA chr14 70009009 GGCxTCT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 71 0 0 10.681027 0.238095 0.02 -0.184156 16 5 469 133 60 60 0 0 TT 11.996982 40 0 1091 0 KEEP - Loxl2 NO AA_2 chr14 70810262 70810262 T A exonic Piwil2 stopgain SNV NM_021308:c.A907T:p.K303X exonic Piwil2 stopgain SNV uc007unx.1:c.A907T:p.K303X exonic ENSMUSG00000033644 stopgain SNV ENSMUST00000048129:c.A907T:p.K303X 14qD2 NA NA chr14 70810262 TCTxGAT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 80 0 0 58.980572 0.645161 0.02 -0.271874 11 20 319 582 60 60 0 0 TT 12.632301 42 0 1155 0 KEEP - Piwil2 YES AA_2 chr14 75438179 75438179 A T exonic 5031414D18Rik nonsynonymous SNV NM_198642:c.A896T:p.E299V exonic 5031414D18Rik nonsynonymous SNV uc007uqk.1:c.A896T:p.E299V exonic ENSMUSG00000034959 nonsynonymous SNV ENSMUST00000036072:c.A896T:p.E299V 14qD3 NA NA chr14 75438179 CTGxGAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 82 0 0 19.710661 0.32 0.02 -0.219255 17 8 502 227 60 60 0 0 AA 13.23461 44 0 1230 0 KEEP + 5031414D18Rik YES AA_2 chr14 79613852 79613852 T A exonic Zfp957 nonsynonymous SNV NM_001033215:c.A313T:p.N105Y exonic Zfp957 nonsynonymous SNV uc007uss.2:c.A313T:p.N105Y exonic ENSMUSG00000071262 nonsynonymous SNV ENSMUST00000040802:c.A313T:p.N105Y 14qD3 "Score=0.920311;Name=No.53585,chr15:82681946" NA chr14 79613852 CATxGAC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 137 0 0 79.592412 0.622222 0.02 -0.39463 17 28 493 792 60 60 0 0 TT 23.757759 79 0 2169 0 KEEP - Zfp957 YES AA_2 chr14 88868653 88868653 T A exonic Pcdh20 synonymous SNV NM_178685:c.A1017T:p.P339P exonic Pcdh20 synonymous SNV uc007uuh.2:c.A1017T:p.P339P exonic ENSMUSG00000050505 synonymous SNV ENSMUST00000061628:c.A1017T:p.P339P 14qE1 NA NA chr14 88868653 AACxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 82 0 0 28.153155 0.323529 0.02 -0.298199 23 11 680 322 60 60 0 0 TT 12.93383 43 0 1197 0 KEEP - Pcdh20 YES AA_2 chr15 100846189 100846189 A C exonic Scn8a nonsynonymous SNV NM_011323:c.A3030C:p.K1010N exonic Scn8a nonsynonymous SNV uc007xsj.2:c.A3030C:p.K1010N exonic ENSMUSG00000023033 nonsynonymous SNV ENSMUST00000108908:c.A2028C:p.K676N 15qF2 NA NA chr15 100846189 CAAxGTG A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 192 0 0 51.030972 0.2875 0.02 1.092001 57 23 1663 609 60 60 0 0 AA 27.071377 90 0 2518 0 KEEP + Scn8a NO AA_2 chr15 101243158 101243158 A T exonic Krt7 nonsynonymous SNV NM_033073:c.A254T:p.E85V exonic Krt7 nonsynonymous SNV uc007xtd.2:c.A254T:p.E85V exonic ENSMUSG00000023039 nonsynonymous SNV ENSMUST00000068904:c.A254T:p.E85V 15qF2 NA NA chr15 101243158 AGGxGCG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 122 0 0 72.366238 0.54902 0.02 1.248357 23 28 667 743 60 60 0 0 AA 15.317053 51 0 1349 0 KEEP + Krt7 YES AA_2 chr15 101991127 101991127 T A intronic Soat2 NA NA intronic Soat2 NA NA intronic ENSMUSG00000023045 NA NA 15qF3 NA NA chr15 101991127 GCCxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 250 0 0 112.117239 0.481928 0.02 1.164237 43 40 1254 1180 60 60 0 0 TT 40.898312 136 0 3677 0 KEEP + Soat2 YES AA_2 chr15 102303739 102303739 A T UTR5 Pcbp2 NA NA UTR5 Pcbp2 NA NA ncRNA_UTR5 ENSMUSG00000056851 NA NA 15qF3 NA NA chr15 102303739 CAAxGTC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 393 0 0 142.053133 0.453782 0.02 2.329356 65 54 1883 1519 60 60 0 0 AA 59.835936 199 0 5547 0 KEEP + Pcbp2 YES AA_2 chr15 28378223 28378223 G C exonic Dnah5 nonsynonymous SNV NM_133365:c.G12676C:p.D4226H exonic Dnahc5 nonsynonymous SNV uc007vjy.1:c.G12676C:p.D4226H exonic ENSMUSG00000022262 nonsynonymous SNV ENSMUST00000067048:c.G12676C:p.D4226H 15qB1 NA NA chr15 28378223 CTAxATG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 83 0 0 21.74617 0.230769 0.02 -0.342065 30 9 903 266 60 60 0 0 GG 9.626721 32 0 920 0 KEEP + Dnah5 NO AA_2 chr15 31227310 31227310 T A exonic Ankrd33b nonsynonymous SNV NM_001164441:c.A1055T:p.Q352L exonic Ankrd33b nonsynonymous SNV uc011zrv.1:c.A473T:p.Q158L exonic ENSMUSG00000022237 nonsynonymous SNV ENSMUST00000110410:c.A1028T:p.Q343L 15qB2 NA NA chr15 31227310 GCTxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.926639 0.92664 0.999999 89 1 0 7.055589 0.088889 0.02 -0.394643 41 4 1183 110 60 60 0 0 TT 10.82433 36 0 963 0 KEEP - Ankrd33b YES AA_2 chr15 32609007 32609007 A T exonic Sema5a synonymous SNV NM_009154:c.A2676T:p.T892T exonic Sema5a synonymous SNV uc007vku.1:c.A2676T:p.T892T exonic ENSMUSG00000022231 synonymous SNV ENSMUST00000100726:c.A2676T:p.T892T 15qB3.1 NA NA chr15 32609007 CACxCAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 96 1 0 18.331948 0.195122 0.02 -0.359549 33 8 928 233 60 60 0 0 AA 14.43306 48 0 1283 0 KEEP + Sema5a YES AA_2 chr15 36528709 36528709 T A exonic Pabpc1 nonsynonymous SNV NM_008774:c.A1334T:p.H445L exonic Pabpc1 nonsynonymous SNV uc007vmx.2:c.A1334T:p.H445L exonic ENSMUSG00000022283 nonsynonymous SNV ENSMUST00000001809:c.A1334T:p.H445L 15qB3.1 NA NA chr15 36528709 CGAxGAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 88 0 0 25.240352 0.3125 0.02 -0.289401 22 10 624 291 60 60 0 0 TT 12.631225 42 0 1137 0 KEEP - Pabpc1 YES AA_2 chr15 44389560 44389560 T A splicing Pkhd1l1(NM_138674:exon54:c.9175+2T>A) NA NA splicing Pkhd1l1(uc007vpy.1:exon54:c.9175+2T>A) NA NA splicing "ENSMUSG00000038725(ENSMUST00000038336:exon54:c.9175+2T>A,ENSMUST00000166957:exon54:c.9175+2T>A)" NA NA 15qB3.2 NA NA chr15 44389560 AGGxAAA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 93 0 0 24.261796 0.263158 0.02 -0.33324 28 10 784 290 60 60 0 0 TT 12.927666 43 0 1136 0 KEEP + Pkhd1l1 YES AA_2 chr15 47669975 47669975 T A exonic Csmd3 stopgain SNV NM_001081391:c.A5257T:p.R1753X exonic Csmd3 stopgain SNV uc007vqr.1:c.A2626T:p.R876X exonic ENSMUSG00000022311 stopgain SNV ENSMUST00000160658:c.A4945T:p.R1649X 15qB3.3 NA NA chr15 47669975 CTCxATT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 79 0 0 36.382792 0.52 0.02 -0.245569 12 13 353 377 60 60 0 0 TT 12.332475 41 0 1145 0 KEEP - Csmd3 YES AA_2 chr15 52939053 52939053 T A exonic Ext1 stopgain SNV NM_010162:c.A1036T:p.R346X exonic Ext1 stopgain SNV uc007vrh.1:c.A1036T:p.R346X exonic ENSMUSG00000061731 stopgain SNV ENSMUST00000077273:c.A1036T:p.R346X 15qC NA NA chr15 52939053 ATCxGAA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 116 2 0 44.060424 0.354167 0.02 -0.420984 31 17 918 495 60 60 0 0 TT 13.233582 44 0 1219 0 KEEP - Ext1 YES AA_2 chr15 53176816 53176816 T A exonic Ext1 nonsynonymous SNV NM_010162:c.A103T:p.S35C exonic Ext1 nonsynonymous SNV uc007vrh.1:c.A103T:p.S35C exonic ENSMUSG00000061731 nonsynonymous SNV ENSMUST00000077273:c.A103T:p.S35C 15qC NA NA chr15 53176816 GGCxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 63 0 0 37.611912 0.541667 0.02 -0.210494 11 13 322 386 60 60 0 0 TT 8.418535 28 0 747 0 KEEP - Ext1 YES AA_2 chr15 57979939 57979939 A T exonic Wdyhv1 nonsynonymous SNV NM_029734:c.A140T:p.Y47F exonic Wdyhv1 nonsynonymous SNV uc007vti.1:c.A140T:p.Y47F exonic ENSMUSG00000022359 nonsynonymous SNV ENSMUST00000022987:c.A140T:p.Y47F 15qD1 NA NA chr15 57979939 AGTxTCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322767 0.322807 0.999879 49 0 0 22.046428 0.444444 0.02 -0.157855 10 8 278 236 60 60 0 0 AA 6.615694 22 0 586 0 KEEP + Wdyhv1 YES AA_2 chr15 63665062 63665062 C T intronic Gsdmc2 NA NA intronic Gsdmc2 NA NA intronic ENSMUSG00000056293 NA NA 15qD1 "Score=0.9615;Name=No.57792,chr15:63708433" NA chr15 63665062 GATxCAA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 184 0 3 16.318874 0.105263 0.02 1.126952 68 8 2026 236 57 57 0 0 CC 25.868205 86 0 2424 0 KEEP - Gsdmc2 NO AA_2 chr15 68000402 68000402 T A exonic Zfat nonsynonymous SNV NM_001145888:c.A2573T:p.E858V exonic Zfat nonsynonymous SNV uc007wbd.2:c.A2552T:p.E851V exonic ENSMUSG00000022335 nonsynonymous SNV ENSMUST00000160248:c.A2573T:p.E858V 15qD2 NA NA chr15 68000402 ACCxCAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 111 0 0 62.041685 0.611111 0.02 -0.315697 14 22 407 620 60 60 0 0 TT 16.533117 55 0 1512 0 KEEP - Zfat YES AA_2 chr15 75506509 75506509 C T exonic Top1mt nonsynonymous SNV NM_028404:c.G157A:p.G53S exonic Top1mt nonsynonymous SNV uc007whb.1:c.G157A:p.G53S exonic ENSMUSG00000000934 nonsynonymous SNV ENSMUST00000000958:c.G157A:p.G53S 15qD3 NA NA chr15 75506509 GGCxCTT C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 367 2 0 20.630738 0.078571 0.02 2.35924 129 11 3798 321 60 60 0 0 CC 47.816607 159 0 4396 0 KEEP - Top1mt NO AA_2 chr15 75733421 75733421 C T exonic Eef1d nonsynonymous SNV NM_029663:c.G818A:p.R273H exonic Eef1d nonsynonymous SNV uc007who.1:c.G818A:p.R273H exonic ENSMUSG00000055762 nonsynonymous SNV ENSMUST00000137426:c.G566A:p.R189H 15qD3 NA NA chr15 75733421 AGGxGCA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 212 0 0 29.053049 0.134615 0.02 2.568826 90 14 2279 402 60 60 0 0 CC 24.578857 82 0 1918 0 KEEP - Eef1d NO AA_2 chr15 75812469 75812469 A T exonic Ccdc166 nonsynonymous SNV NM_001163518:c.T191A:p.L64Q exonic 2410075B13Rik nonsynonymous SNV uc007why.2:c.T191A:p.L64Q ncRNA_exonic ENSMUSG00000044095 NA NA 15qD3 NA NA chr15 75812469 CGCxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 DBSNP COVERED 0.708604 0.717315 0.987855 63 0 0 38.419062 0.451613 0.02 -0.271629 17 14 478 410 60 60 0 0 AA 6.917817 23 0 635 0 KEEP - Ccdc166 YES AA_2 chr15 79118201 79118201 T A exonic Pla2g6 stopgain SNV NM_001199024:c.A1885T:p.K629X exonic Pla2g6 stopgain SNV uc007wte.2:c.A1885T:p.K629X exonic ENSMUSG00000042632 stopgain SNV ENSMUST00000047816:c.A1885T:p.K629X 15qE1 NA NA chr15 79118201 CCTxGTT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 76 0 0 22.393633 0.310345 0.02 -0.254329 20 9 578 259 60 60 0 0 TT 10.174257 34 0 890 0 KEEP - Pla2g6 YES AA_2 chr15 79416083 79416083 T A intronic Dmc1 NA NA intronic Dmc1 NA NA intronic ENSMUSG00000022429 NA NA 15qE1 NA NA chr15 79416083 AACxGCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 72 0 0 28.985675 0.366667 0.02 -0.26312 19 11 565 323 60 60 0 0 TT 9.31898 31 0 853 0 KEEP - Dmc1 YES AA_2 chr15 79762915 79762915 A T exonic Cbx7 nonsynonymous SNV NM_144811:c.T32A:p.F11Y exonic Cbx7 nonsynonymous SNV uc007wuv.1:c.T32A:p.F11Y exonic ENSMUSG00000053411 nonsynonymous SNV ENSMUST00000089293:c.T32A:p.F11Y 15qE1 NA NA chr15 79762915 GCAxACA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.999859 31 0 0 9.985134 0.4 0.02 -0.087686 6 4 167 110 60 60 0 0 AA 5.413683 18 0 493 0 KEEP - Cbx7 YES AA_2 chr15 81447141 81447141 C G intronic Ep300 NA NA intronic Ep300 NA NA intronic ENSMUSG00000055024 NA NA 15qE1 NA NA chr15 81447141 TTTxTTC C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 121 0 0 23.813984 0.217391 0.02 -0.403438 36 10 1075 295 60 60 0 0 CC 15.943868 53 0 1517 0 KEEP + Ep300 NO AA_2 chr15 82624429 82624429 A G exonic Cyp2d26 nonsynonymous SNV NM_029562:c.T175C:p.Y59H exonic Cyp2d26 nonsynonymous SNV uc007wzn.1:c.T175C:p.Y59H exonic ENSMUSG00000022445 nonsynonymous SNV ENSMUST00000006094:c.T175C:p.Y59H 15qE1 NA NA chr15 82624429 TGTxTGG A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 122 1 0 73.050209 0.5 0.02 1.337533 26 26 712 763 60 60 0 0 AA 16.538287 55 0 1459 0 KEEP - Cyp2d26 NO AA_2 chr15 88970566 88970566 G A exonic Mapk12 nonsynonymous SNV NM_013871:c.C247T:p.H83Y exonic Mapk12 nonsynonymous SNV uc007xfm.1:c.C7T:p.H3Y exonic ENSMUSG00000022610 nonsynonymous SNV ENSMUST00000088827:c.C247T:p.H83Y 15qE3 NA NA chr15 88970566 CGTxGCG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 101 0 0 43.06024 0.354167 0.02 -0.420957 31 17 910 485 60 60 0 0 GG 12.626935 42 0 1155 0 KEEP - Mapk12 NO AA_2 chr15 89218613 89218613 G A exonic Klhdc7b nonsynonymous SNV NM_001160178:c.G1292A:p.R431H exonic Klhdc7b nonsynonymous SNV uc011zxw.1:c.G1292A:p.R431H exonic ENSMUSG00000091680 nonsynonymous SNV ENSMUST00000166926:c.G1292A:p.R431H 15qE3 NA NA chr15 89218613 AGCxCTA G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 201 0 0 50.544183 0.22449 0.02 0.934518 76 22 2035 627 60 60 0 0 GG 25.22158 84 0 2108 0 KEEP + Klhdc7b NO AA_2 chr15 94358499 94358499 G C exonic Pus7l nonsynonymous SNV NM_172437:c.C1451G:p.A484G exonic Pus7l nonsynonymous SNV uc007xjh.2:c.C1451G:p.A484G exonic ENSMUSG00000033356 nonsynonymous SNV ENSMUST00000049151:c.C1451G:p.A484G 15qE3 NA NA chr15 94358499 TTGxCAT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999998 58 2 0 9.881206 0.235294 0.02 -0.149098 13 4 380 120 60 60 0 0 GG 10.223734 34 0 925 0 KEEP - Pus7l NO AA_2 chr15 95484986 95484986 C T exonic Dbx2 nonsynonymous SNV NM_207533:c.G208A:p.A70T exonic Dbx2 nonsynonymous SNV uc007xjs.1:c.G208A:p.A70T exonic ENSMUSG00000045608 nonsynonymous SNV ENSMUST00000054244:c.G208A:p.A70T 15qF1 NA NA chr15 95484986 CGGxCAC C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.352705 0.353947 0.99649 36 0 0 22.97757 0.473684 0.02 -0.166557 10 9 290 244 60 60 0 0 CC 4.509921 15 0 405 0 KEEP - Dbx2 NO AA_2 chr15 98171189 98171189 A T exonic Olfr284 nonsynonymous SNV NM_146281:c.T182A:p.L61Q exonic Olfr284 nonsynonymous SNV uc007xmh.1:c.T182A:p.L61Q exonic ENSMUSG00000051793 nonsynonymous SNV ENSMUST00000063289:c.T182A:p.L61Q 15qF1 NA NA chr15 98171189 CTCxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 94 0 0 63.823391 0.5 0.02 -0.403402 23 23 668 667 60 60 0 0 AA 11.730716 39 0 1085 0 KEEP - Olfr284 YES AA_2 chr15 98724370 98724370 C G exonic Dhh nonsynonymous SNV NM_007857:c.G1187C:p.G396A exonic Dhh nonsynonymous SNV uc007xoh.2:c.G1187C:p.G396A exonic ENSMUSG00000023000 nonsynonymous SNV ENSMUST00000023737:c.G1187C:p.G396A 15qF1 NA NA chr15 98724370 CAGxCCA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.384723 0.387407 0.993072 35 0 0 9.36347 0.2 0.02 -0.175405 16 4 465 118 60 60 0 0 CC 3.308564 11 0 304 0 KEEP - Dhh NO AA_2 chr15 99058931 99058931 C G exonic Kcnh3 nonsynonymous SNV NM_010601:c.C607G:p.P203A exonic Kcnh3 nonsynonymous SNV uc011zzc.1:c.C607G:p.P203A exonic ENSMUSG00000037579 nonsynonymous SNV ENSMUST00000041415:c.C607G:p.P203A 15qF1 NA NA chr15 99058931 TTGxCTG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 193 2 0 112.104652 0.487805 0.02 1.17302 42 40 1229 1177 60 60 0 0 CC 25.866365 86 0 2390 0 KEEP + Kcnh3 NO AA_2 chr16 10490992 10490992 A T intronic Ciita NA NA ncRNA_exonic AK163054 NA NA exonic ENSMUSG00000075404 nonsynonymous SNV ENSMUST00000100186:c.A244T:p.R82W 16qA1 NA NA chr16 10490992 CCCxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 67 0 0 27.358443 0.47619 0.02 -0.184166 11 10 314 289 60 60 0 0 AA 11.727535 39 0 1051 0 KEEP + Ciita YES AA_2 chr16 13715662 13715662 A C exonic Pla2g10 nonsynonymous SNV NM_011987:c.T341G:p.L114R exonic Pla2g10 nonsynonymous SNV uc007ygh.1:c.T341G:p.L114R exonic ENSMUSG00000022683 nonsynonymous SNV ENSMUST00000023364:c.T341G:p.L114R 16qA1 NA NA chr16 13715662 AAAxGTT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 75 0 0 10.612587 0.294118 0.02 -0.14906 12 5 346 127 60 60 0 0 AA 14.136737 47 0 1312 0 KEEP - Pla2g10 NO AA_2 chr16 22956215 22956215 A T exonic Hrg nonsynonymous SNV NM_053176:c.A521T:p.Y174F exonic Hrg nonsynonymous SNV uc007ysw.2:c.A521T:p.Y174F exonic ENSMUSG00000022877 nonsynonymous SNV ENSMUST00000023590:c.A521T:p.Y174F 16qB1 NA NA chr16 22956215 AGTxCAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 137 0 0 60.446152 0.5 0.02 -0.394608 22 22 615 632 60 60 0 0 AA 22.250927 74 0 1966 0 KEEP + Hrg YES AA_2 chr16 22959263 22959263 C T exonic Hrg synonymous SNV NM_053176:c.C696T:p.S232S exonic Hrg synonymous SNV uc007ysw.2:c.C696T:p.S232S exonic ENSMUSG00000022877 synonymous SNV ENSMUST00000023590:c.C696T:p.S232S 16qB1 NA NA chr16 22959263 GTCxTAC C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 174 4 0 56.404236 0.512821 0.02 -0.342044 19 20 561 586 60 60 0 0 CC 33.088905 110 0 3120 0 KEEP + Hrg NO AA_2 chr16 29472029 29472029 G A exonic Atp13a4 synonymous SNV NM_001164612:c.C687T:p.A229A exonic Atp13a4 synonymous SNV uc007ywa.2:c.C687T:p.A229A exonic ENSMUSG00000038094 synonymous SNV ENSMUST00000057018:c.C687T:p.A229A 16qB2 NA NA chr16 29472029 GATxGCA G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.457697 0.457757 0.999869 49 0 0 30.423214 0.5 0.02 -0.192948 11 11 327 318 60 60 0 0 GG 6.317558 21 0 605 0 KEEP - Atp13a4 NO AA_2 chr16 33961713 33961713 T A exonic Umps nonsynonymous SNV NM_009471:c.A924T:p.L308F exonic Umps nonsynonymous SNV uc007zaq.1:c.A390T:p.L130F exonic ENSMUSG00000022814 nonsynonymous SNV ENSMUST00000023510:c.A924T:p.L308F 16qB3 NA NA chr16 33961713 TATxAAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 81 0 0 39.321536 0.441176 0.02 -0.298167 19 15 543 423 60 60 0 0 TT 11.729672 39 0 1070 0 KEEP - Umps YES AA_2 chr16 35663245 35663245 T G exonic Sema5b nonsynonymous SNV NM_013661:c.T3166G:p.F1056V exonic Sema5b nonsynonymous SNV uc012aez.1:c.T3253G:p.F1085V exonic ENSMUSG00000052133 nonsynonymous SNV ENSMUST00000120756:c.T3253G:p.F1085V 16qB3 NA NA chr16 35663245 AACxTCT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 192 2 0 24.397899 0.206349 0.02 1.045489 50 13 1450 321 60 60 0 0 TT 30.080337 100 0 2811 0 KEEP + Sema5b NO AA_2 chr16 35943394 35943394 T G intronic Parp9 NA NA intronic Parp9 NA NA intronic ENSMUSG00000022906 NA NA 16qB3 NA NA chr16 35943394 CAAxTGG T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 104 0 0 25.806405 0.322581 0.02 -0.271857 21 10 588 295 60 60 0 0 TT 18.309345 61 0 1612 0 KEEP + Parp9 NO AA_2 chr16 4038242 4038242 T A exonic Dnase1 nonsynonymous SNV NM_010061:c.T292A:p.Y98N exonic Dnase1 nonsynonymous SNV uc007xzi.1:c.T169A:p.Y57N exonic ENSMUSG00000005980 nonsynonymous SNV ENSMUST00000006136:c.T292A:p.Y98N 16qA1 NA NA chr16 4038242 AGCxACA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.38738 0.387407 0.999931 51 0 0 41.568999 0.7 0.02 -0.175401 6 14 177 402 60 60 0 0 TT 7.515757 25 0 666 0 KEEP + Dnase1 YES AA_2 chr16 4835808 4835808 A T exonic 4930562C15Rik nonsynonymous SNV NM_030192:c.A220T:p.M74L exonic 4930562C15Rik nonsynonymous SNV uc007yam.1:c.A220T:p.M74L exonic ENSMUSG00000022518 nonsynonymous SNV ENSMUST00000100211:c.A220T:p.M74L 16qA1 NA NA chr16 4835808 CCAxTGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 32 0 0 6.872773 0.2 0.02 -0.131541 12 3 336 87 60 60 0 0 AA 4.811555 16 0 430 0 KEEP + 4930562C15Rik YES AA_2 chr16 50224859 50224859 A T exonic Bbx nonsynonymous SNV NM_027444:c.T1451A:p.V484D exonic Bbx nonsynonymous SNV uc007zkn.2:c.T1451A:p.V484D exonic ENSMUSG00000022641 nonsynonymous SNV ENSMUST00000066037:c.T1127A:p.V376D 16qB5 NA NA chr16 50224859 ATGxCAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322777 0.322807 0.999909 48 0 0 27.501611 0.555556 0.02 -0.15778 8 10 223 281 60 60 0 0 AA 7.20905 24 0 630 0 KEEP - Bbx YES AA_2 chr16 56778788 56778788 T G exonic Gpr128 nonsynonymous SNV NM_172825:c.A136C:p.S46R exonic Gpr128 nonsynonymous SNV uc007zmw.1:c.A136C:p.S46R exonic ENSMUSG00000022755 nonsynonymous SNV ENSMUST00000023437:c.A136C:p.S46R 16qC1.1 NA NA chr16 56778788 TACxTGG T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 146 0 0 38.619474 0.390244 0.02 -0.3683 25 16 726 429 60 60 0 0 TT 25.566453 85 0 2362 0 KEEP - Gpr128 NO AA_2 chr16 57160254 57160254 G C exonic Nit2 nonsynonymous SNV NM_023175:c.C510G:p.C170W exonic Nit2 nonsynonymous SNV uc007zna.1:c.C510G:p.C170W exonic ENSMUSG00000022751 nonsynonymous SNV ENSMUST00000023432:c.C510G:p.C170W 16qC1.1 NA NA chr16 57160254 CTGxCAG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.196286 0.196312 0.999869 41 0 0 23.590126 0.571429 0.02 -0.122369 6 8 157 239 60 60 0 0 GG 6.315056 21 0 573 0 KEEP - Nit2 NO AA_2 chr16 70433766 70433766 A T intronic Gbe1 NA NA intronic Gbe1 NA NA intronic ENSMUSG00000022707 NA NA 16qC2 NA NA chr16 70433766 ATCxGTA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 57 0 0 33.900163 0.5 0.02 -0.210466 12 12 342 354 60 60 0 0 AA 8.72229 29 0 799 0 KEEP + Gbe1 YES AA_2 chr16 73933268 73933268 C G intronic Robo2 NA NA intronic "Robo2,mKIAA1568" NA NA intronic ENSMUSG00000052516 NA NA 16qC3.1 NA NA chr16 73933268 TTTxTCC C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 102 0 0 21.525096 0.219512 0.02 -0.359604 32 9 959 266 60 60 0 0 CC 12.935765 43 0 1235 0 KEEP - Robo2 NO AA_2 chr16 75758133 75758133 C T exonic Hspa13 nonsynonymous SNV NM_030201:c.G1309A:p.V437M exonic Hspa13 nonsynonymous SNV uc007zrp.2:c.G1309A:p.V437M exonic ENSMUSG00000032932 nonsynonymous SNV ENSMUST00000046283:c.G1309A:p.V437M 16qC3.1 NA NA chr16 75758133 TCAxCAC C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 59 0 0 12.339024 0.333333 0.02 -0.140311 10 5 284 141 60 60 0 0 CC 12.330822 41 0 1119 0 KEEP - Hspa13 NO AA_2 chr16 91657610 91657610 C G exonic Son nonsynonymous SNV NM_019973:c.C2999G:p.A1000G exonic Son nonsynonymous SNV uc012aii.1:c.C2429G:p.A810G exonic ENSMUSG00000022961 nonsynonymous SNV ENSMUST00000114036:c.C2999G:p.A1000G 16qC3.3 NA NA chr16 91657610 CTGxAGA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 106 0 0 22.180949 0.243243 0.02 -0.324508 28 9 820 268 60 60 0 0 CC 17.145399 57 0 1601 0 KEEP + Son NO AA_2 chr17 23971849 23971849 A T intronic Prss33 NA NA intronic Prss33 NA NA intronic ENSMUSG00000049620 NA NA 17qA3.3 NA NA chr17 23971849 GACxGGG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 97 1 0 62.455985 0.511628 0.02 -0.385857 21 22 591 649 60 60 0 0 AA 11.365841 38 0 1009 0 KEEP - Prss33 YES AA_2 chr17 26582722 26582722 C G UTR3 Neurl1b NA NA UTR3 Neurl1b NA NA UTR3 ENSMUSG00000034413 NA NA 17qA3.3 NA NA chr17 26582722 TCAxTGC C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 113 0 0 22.561973 0.264706 0.02 -0.306955 25 9 724 268 60 60 0 0 CC 19.550745 65 0 1821 0 KEEP + Neurl1b NO AA_2 chr17 29235340 29235340 A T splicing Cdkn1a NA NA splicing Cdkn1a NA NA splicing ENSMUSG00000023067 NA NA 17qA3.3 NA NA chr17 29235340 TTCxGCC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 121 0 0 53.725465 0.4 0.02 -0.438494 30 20 870 588 60 60 0 0 AA 15.638964 52 0 1417 0 KEEP + Cdkn1a YES AA_2 chr17 31395040 31395040 T G intronic Rsph1 NA NA intronic Rsph1 NA NA intronic ENSMUSG00000024033 NA NA 17qA3.3 NA NA chr17 31395040 TCTxACC T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 346 0 0 24.878492 0.107143 0.02 2.703986 100 12 2784 357 60 60 0 0 TT 50.486916 173 1 4553 13 KEEP - Rsph1 NO AA_2 chr17 32218482 32218482 G T ncRNA_intronic Pdxk-ps NA NA ncRNA_intronic Pdxk-ps NA NA ncRNA_intronic ENSMUSG00000002791 NA NA 17qB1 NA NA chr17 32218482 GAAxATG G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 101 0 0 7.620352 0.121212 0.02 -0.289432 29 4 872 110 60 60 0 0 GG 15.643327 52 0 1496 0 KEEP - Pdxk-ps NO AA_2 chr17 32529075 32529075 A T exonic Rasal3 stopgain SNV NM_178785:c.T2822A:p.L941X exonic Rasal3 stopgain SNV uc008bwv.1:c.T2822A:p.L941X exonic ENSMUSG00000052142 stopgain SNV ENSMUST00000063824:c.T2822A:p.L941X 17qB1 NA NA chr17 32529075 CTCxACG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 122 0 0 49.753845 0.387755 0.02 -0.429732 30 19 869 549 60 60 0 0 AA 18.645483 62 0 1696 0 KEEP - Rasal3 YES AA_2 chr17 32806784 32806784 C G exonic Cyp4f40 synonymous SNV NM_001101588:c.C591G:p.L197L exonic Cyp4f40 synonymous SNV uc012apc.1:c.C591G:p.L197L exonic ENSMUSG00000090700 synonymous SNV ENSMUST00000165061:c.C591G:p.L197L 17qB1 NA NA chr17 32806784 CCTxATG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 81 2 0 34.208717 0.521739 0.02 -0.201726 11 12 330 354 60 60 0 0 CC 13.537436 45 0 1293 0 KEEP + Cyp4f40 NO AA_2 chr17 32806785 32806785 A T exonic Cyp4f40 nonsynonymous SNV NM_001101588:c.A592T:p.M198L exonic Cyp4f40 nonsynonymous SNV uc012apc.1:c.A592T:p.M198L exonic ENSMUSG00000090700 nonsynonymous SNV ENSMUST00000165061:c.A592T:p.M198L 17qB1 NA NA chr17 32806785 CTCxTGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 82 2 0 33.308896 0.521739 0.02 -0.201705 11 12 313 345 60 60 0 0 AA 13.232888 44 0 1194 0 KEEP + Cyp4f40 YES AA_2 chr17 33570979 33570979 A T exonic Actl9 nonsynonymous SNV NM_183282:c.A1067T:p.E356V exonic Actl9 nonsynonymous SNV uc008byl.1:c.A1067T:p.E356V exonic ENSMUSG00000092519 nonsynonymous SNV ENSMUST00000174088:c.A1067T:p.E356V 17qB1 NA NA chr17 33570979 CAGxGCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 88 0 0 31.055029 0.4 0.02 -0.263105 18 12 532 341 60 60 0 0 AA 13.523838 45 0 1215 0 KEEP + Actl9 YES AA_2 chr17 34275093 34275093 G C exonic H2-DMa nonsynonymous SNV NM_010386:c.G619C:p.E207Q exonic H2-DMa nonsynonymous SNV uc008cbm.1:c.G619C:p.E207Q exonic ENSMUSG00000037649 nonsynonymous SNV ENSMUST00000042121:c.G619C:p.E207Q 17qB1 NA NA chr17 34275093 CACxAGA G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 270 4 0 13.92169 0.089744 0.02 1.199566 71 7 1948 208 60 60 0 0 GG 44.475728 148 0 3922 0 KEEP + H2-DMa NO AA_2 chr17 34873498 34873498 A T exonic C4b synonymous SNV NM_009780:c.T2154A:p.A718A exonic C4b synonymous SNV uc008cdk.2:c.T2154A:p.A718A exonic ENSMUSG00000073418 synonymous SNV ENSMUST00000069507:c.T2154A:p.A718A 17qB1 "Score=0.953125;Name=No.65650,chr17:34932098" NA chr17 34873498 GGCxGCC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.259018 0.260965 0.99254 39 0 10 21.998531 0.5 0.02 -0.140327 8 8 240 230 60 36 0 0 AA 5.39369 18 0 476 0 KEEP - C4b YES AA_2 chr17 35040406 35040406 G C exonic Ehmt2 nonsynonymous SNV NM_145830:c.G1003C:p.V335L exonic Ehmt2 nonsynonymous SNV uc008ced.1:c.G1003C:p.V335L exonic ENSMUSG00000013787 nonsynonymous SNV ENSMUST00000013931:c.G1003C:p.V335L 17qB1 NA NA chr17 35040406 CGGxTGG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 117 1 0 21.817665 0.2 0.02 -0.394652 36 9 1037 273 60 60 0 0 GG 19.246602 64 0 1739 0 KEEP + Ehmt2 NO AA_2 chr17 35691561 35691561 G C intronic Cdsn NA NA intronic Cdsn NA NA intronic ENSMUSG00000039518 NA NA 17qB1 NA NA chr17 35691561 GCTxATG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.227714 0.229173 0.993634 27 0 0 7.172395 0.2 0.02 -0.131565 12 3 361 90 60 60 0 0 GG 3.610198 12 0 349 0 KEEP + Cdsn NO AA_2 chr17 36023138 36023138 C T exonic Dhx16 nonsynonymous SNV NM_026987:c.C1967T:p.S656L exonic Dhx16 nonsynonymous SNV uc008ciw.2:c.C1967T:p.S656L exonic ENSMUSG00000024422 nonsynonymous SNV ENSMUST00000025292:c.C1967T:p.S656L 17qB1 NA NA chr17 36023138 CCTxAGA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 158 0 0 74.53029 0.39726 0.02 1.153303 44 29 1315 820 60 60 0 0 CC 21.951248 73 0 2078 0 KEEP + Dhx16 NO AA_2 chr17 36504789 36504789 T A exonic H2-M10.3 stopgain SNV NM_201608:c.A331T:p.R111X exonic H2-M10.3 stopgain SNV uc008ckz.1:c.A331T:p.R111X exonic ENSMUSG00000058124 stopgain SNV ENSMUST00000073546:c.A331T:p.R111X 17qB1 "Score=0.908033;Name=No.65676,chr17:36907769" NA chr17 36504789 TTCxATG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 66 0 0 40.447842 0.46875 0.02 -0.280647 17 15 502 429 60 60 0 0 TT 8.997548 30 0 818 0 KEEP - H2-M10.3 YES AA_2 chr17 37362552 37362552 G T exonic Olfr96 nonsynonymous SNV NM_146514:c.G481T:p.V161F exonic Olfr96 nonsynonymous SNV uc008cml.1:c.G481T:p.V161F exonic ENSMUSG00000064121 nonsynonymous SNV ENSMUST00000078209:c.G481T:p.V161F 17qB1 NA NA chr17 37362552 GTTxTTG G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 115 0 0 17.554856 0.150943 0.02 1.31996 45 8 1291 235 60 60 0 0 GG 13.799983 46 0 1243 0 KEEP + Olfr96 NO AA_2 chr17 37451407 37451407 T G upstream "Olfr100,Olfr102" NA NA upstream Olfr100 NA NA upstream ENSMUSG00000091531 NA NA 17qB1 "Score=0.919845;Name=No.65686,chr17:37436196" NA chr17 37451407 TCAxAAC T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 203 0 0 46.195495 0.367347 0.02 1.357263 31 18 861 516 60 60 0 0 TT 34.581369 115 0 3059 0 KEEP NA Olfr100 NO AA_2 chr17 37451408 37451408 A T upstream "Olfr100,Olfr102" NA NA upstream Olfr100 NA NA upstream ENSMUSG00000091531 NA NA 17qB1 "Score=0.919845;Name=No.65686,chr17:37436196" NA chr17 37451408 CATxACC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 201 0 0 44.894687 0.375 0.02 1.071162 30 18 872 501 60 60 0 0 AA 34.288419 114 0 3151 0 KEEP NA Olfr100 YES AA_2 chr17 37988234 37988234 A T exonic Olfr126 nonsynonymous SNV NM_146890:c.A696T:p.E232D exonic Olfr126 nonsynonymous SNV uc008cnr.1:c.A696T:p.E232D exonic ENSMUSG00000061777 nonsynonymous SNV ENSMUST00000076936:c.A696T:p.E232D 17qB1 NA NA chr17 37988234 TGAxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 617 1 53 204.869107 0.461078 0.02 3.808924 90 77 2644 2182 60 60 0 0 AA 102.828229 342 0 9455 0 KEEP + Olfr126 YES AA_2 chr17 47451672 47451672 A T exonic Trerf1 synonymous SNV NM_172622:c.A657T:p.P219P exonic Trerf1 synonymous SNV uc008cux.1:c.A657T:p.P219P exonic ENSMUSG00000064043 synonymous SNV ENSMUST00000077951:c.A657T:p.P219P 17qC NA NA chr17 47451672 ACCxGCC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.552864 0.552887 0.999957 55 0 0 13.980619 0.24 0.02 -0.219261 19 6 563 171 60 60 0 0 AA 7.816666 26 0 706 0 KEEP + Trerf1 YES AA_2 chr17 53552987 53552987 A T exonic Efhb nonsynonymous SNV NM_172497:c.T1794A:p.D598E exonic Efhb nonsynonymous SNV uc008czm.1:c.T543A:p.D181E exonic ENSMUSG00000023931 nonsynonymous SNV ENSMUST00000024725:c.T1794A:p.D598E 17qC NA NA chr17 53552987 CCCxTCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 75 0 0 18.01621 0.35 0.02 -0.175396 13 7 369 203 60 60 0 0 AA 13.232186 44 0 1185 0 KEEP - Efhb YES AA_2 chr17 55941422 55941422 G T exonic Emr4 nonsynonymous SNV NM_139138:c.G1163T:p.C388F exonic Emr4 nonsynonymous SNV uc008dae.2:c.G1163T:p.C388F exonic ENSMUSG00000032915 nonsynonymous SNV ENSMUST00000025004:c.G1163T:p.C388F 17qD NA NA chr17 55941422 TCTxCCT G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 135 3 0 15.670771 0.159091 0.02 -0.385909 37 7 1097 207 60 60 0 0 GG 20.755465 69 0 1946 0 KEEP + Emr4 NO AA_2 chr17 56259723 56259723 A T exonic Lrg1 nonsynonymous SNV NM_029796:c.T671A:p.L224Q exonic Lrg1 nonsynonymous SNV uc008dbb.1:c.T671A:p.L224Q exonic ENSMUSG00000037095 nonsynonymous SNV ENSMUST00000041357:c.T671A:p.L224Q 17qD NA NA chr17 56259723 AGCxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 77 0 0 47.634175 0.428571 0.02 -0.368184 24 18 681 515 60 60 0 0 AA 9.009518 30 0 801 0 KEEP - Lrg1 YES AA_2 chr17 57345720 57345720 T A splicing C3(NM_009778:exon37:c.4351-2A>T) NA NA splicing C3(uc008deg.1:exon37:c.4351-2A>T) NA NA splicing ENSMUSG00000024164(ENSMUST00000024988:exon37:c.4351-2A>T) NA NA 17qD NA NA chr17 57345720 ATCxGAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 53 2 0 16.069415 0.352941 0.02 -0.149098 11 6 319 180 60 60 0 0 TT 9.002792 30 0 806 0 KEEP - C3 YES AA_2 chr17 88987077 88987077 A T UTR3 Ppp1r21 NA NA UTR3 Klraq1 NA NA UTR3 ENSMUSG00000034709 NA NA 17qE4 NA NA chr17 88987077 CGCxGTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 96 2 0 31.738497 0.352941 0.02 -0.298198 22 12 648 356 60 60 0 0 AA 15.039048 50 0 1389 0 KEEP + Ppp1r21 YES AA_2 chr17 89157712 89157712 A G exonic Lhcgr synonymous SNV NM_013582:c.T588C:p.H196H exonic Lhcgr synonymous SNV uc012ayp.1:c.T195C:p.H65H exonic ENSMUSG00000024107 synonymous SNV ENSMUST00000024916:c.T588C:p.H196H 17qE5 NA NA chr17 89157712 TGCxTGG A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 230 0 0 98.715603 0.535211 0.02 1.072681 33 38 932 1019 60 60 0 0 AA 34.582048 115 0 3095 0 KEEP - Lhcgr NO AA_2 chr17 89191153 89191153 A T exonic Lhcgr synonymous SNV NM_013582:c.T159A:p.A53A exonic Lhcgr synonymous SNV uc008dvv.1:c.T159A:p.A53A exonic ENSMUSG00000024107 synonymous SNV ENSMUST00000024916:c.T159A:p.A53A 17qE5 NA NA chr17 89191153 GCCxGCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036637 0.036766 0.99649 23 0 0 8.124433 0.5 0.02 -0.052619 3 3 87 85 60 60 0 0 AA 4.505857 15 0 384 0 KEEP - Lhcgr YES AA_2 chr18 15220439 15220439 A C exonic Kctd1 synonymous SNV NM_001142731:c.T1635G:p.S545S exonic Kctd1 synonymous SNV uc008edn.2:c.T1635G:p.S545S exonic ENSMUSG00000036225 synonymous SNV ENSMUST00000168989:c.T1635G:p.S545S 18qA1 NA NA chr18 15220439 GGAxGAA A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 117 2 0 12.856349 0.14 0.02 -0.438458 43 7 1236 183 60 60 0 0 AA 14.991959 50 0 1352 0 KEEP - Kctd1 NO AA_2 chr18 15610776 15610776 A T exonic Chst9 stopgain SNV NM_199055:c.T1238A:p.L413X exonic Chst9 stopgain SNV uc008edv.1:c.T1238A:p.L413X exonic ENSMUSG00000047161 stopgain SNV ENSMUST00000053017:c.T1238A:p.L413X 18qA1 NA NA chr18 15610776 TACxAAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.4905 0.490544 0.999909 50 0 0 30.632524 0.478261 0.02 -0.201717 12 11 348 323 60 60 0 0 AA 7.201896 24 0 634 0 KEEP - Chst9 YES AA_2 chr18 16147468 16147468 G A intergenic "Chst9(dist=270913),Cdh2(dist=599918)" NA NA intergenic "Chst9(dist=228802),Cdh2(dist=599918)" NA NA ncRNA_exonic ENSMUSG00000043223 NA NA 18qA1 "Score=0.977686;Name=No.70747,chr5:138945963" NA chr18 16147468 TATxCAA G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 116 0 13 19.416485 0.204545 0.02 -0.385871 35 9 1023 248 55 55 0 0 GG 16.843704 56 0 1564 0 KEEP NA Chst9 NO AA_2 chr18 22568449 22568449 T A UTR5 Asxl3 NA NA UTR5 Asxl3 NA NA exonic ENSMUSG00000045215 nonsynonymous SNV ENSMUST00000097655:c.T30A:p.N10K 18qA2 NA NA chr18 22568449 GAAxGCC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 170 1 0 68.134073 0.462963 0.02 1.418628 29 25 812 724 60 60 0 0 TT 26.765022 89 0 2396 0 KEEP + Asxl3 YES AA_2 chr18 32584512 32584512 C T exonic Bin1 nonsynonymous SNV NM_001083334:c.C803T:p.P268L exonic Bin1 nonsynonymous SNV uc008eji.1:c.C803T:p.P268L exonic ENSMUSG00000024381 nonsynonymous SNV ENSMUST00000091967:c.C803T:p.P268L 18qB1 NA NA chr18 32584512 CACxTCC C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 81 0 0 48.073453 0.5 0.02 -0.298196 17 17 498 502 60 60 0 0 CC 11.730412 39 0 1101 0 KEEP + Bin1 NO AA_2 chr18 34589814 34589814 T A intronic Pkd2l2 NA NA intronic Pkd2l2 NA NA intronic ENSMUSG00000014503 NA NA 18qB1 NA NA chr18 34589814 CAAxGCC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 137 0 0 83.687942 0.568627 0.02 1.346253 22 29 629 850 60 60 0 0 TT 16.830281 56 0 1488 0 KEEP + Pkd2l2 YES AA_2 chr18 34968185 34968185 C G exonic Kdm3b nonsynonymous SNV NM_001081256:c.C1674G:p.F558L exonic Kdm3b nonsynonymous SNV uc008elq.1:c.C1674G:p.F558L exonic ENSMUSG00000038773 nonsynonymous SNV ENSMUST00000091949:c.C1074G:p.F358L 18qB1 NA NA chr18 34968185 CTTxACA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 DBSNP COVERED 0.995084 0.995084 1 156 2 0 11.798799 0.089552 0.02 1.403469 61 6 1819 177 60 60 0 0 CC 20.146462 67 0 1890 0 KEEP + Kdm3b NO AA_2 chr18 36808406 36808406 A T intronic Ankhd1 NA NA intronic Ankhd1 NA NA intronic ENSMUSG00000024483 NA NA 18qB2 NA NA chr18 36808406 TTAxGTA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999997 71 0 0 37.875042 0.466667 0.02 -0.263107 16 14 471 402 60 60 0 0 AA 9.618312 32 0 883 0 KEEP + Ankhd1 YES AA_2 chr18 37112832 37112832 A C exonic "Pcdha4,Pcdha4-g" nonsynonymous SNV NM_001174154:c.A413C:p.K138T exonic "Pcdha4,Pcdha4-g" nonsynonymous SNV uc008eox.2:c.A413C:p.K138T exonic ENSMUSG00000007440 nonsynonymous SNV ENSMUST00000115661:c.A413C:p.K138T 18qB2 NA NA chr18 37112832 AAAxGAA A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 130 0 0 24.490157 0.20339 0.02 1.276129 47 12 1375 317 60 60 0 0 AA 19.250073 64 0 1782 0 KEEP + Pcdha4 NO AA_2 chr18 37166122 37166122 C A exonic Pcdha10 nonsynonymous SNV NM_009961:c.C1149A:p.N383K exonic Pcdha10 nonsynonymous SNV uc008epf.2:c.C1149A:p.N383K exonic ENSMUSG00000007440 nonsynonymous SNV ENSMUST00000115658:c.C1149A:p.N383K 18qB3 NA NA chr18 37166122 CAAxGGG C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.989541 0.989542 0.999998 102 0 0 86.128441 0.508197 0.02 1.258619 30 31 820 897 60 60 0 0 CC 10.221145 34 0 886 0 KEEP + Pcdha10 NO AA_2 chr18 37481856 37481856 T A exonic Pcdhb5 nonsynonymous SNV NM_053130:c.T1634A:p.L545Q exonic Pcdhb5 nonsynonymous SNV uc008epq.1:c.T1634A:p.L545Q exonic ENSMUSG00000063687 nonsynonymous SNV ENSMUST00000078271:c.T1634A:p.L545Q 18qB3 NA NA chr18 37481856 CTCxGGT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 306 10 6 107.813612 0.444444 0.02 1.067978 50 40 1449 1156 60 60 0 0 TT 53.235356 177 0 4893 0 KEEP + Pcdhb5 YES AA_2 chr18 42712246 42712246 A T exonic Tcerg1 nonsynonymous SNV NM_001039474:c.A1993T:p.M665L exonic Tcerg1 nonsynonymous SNV uc008etz.1:c.A1930T:p.M644L exonic ENSMUSG00000024498 nonsynonymous SNV ENSMUST00000115545:c.A1930T:p.M644L 18qB3 NA NA chr18 42712246 CGAxTGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 52 0 0 15.588231 0.4 0.02 -0.131224 9 6 240 171 60 60 0 0 AA 7.51722 25 0 680 0 KEEP + Tcerg1 YES AA_2 chr18 77668770 77668770 A T intronic Loxhd1 NA NA intronic Loxhd1 NA NA intronic ENSMUSG00000032818 NA NA 18qE3 NA NA chr18 77668770 AGAxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717228 0.717315 0.999879 56 0 0 37.608967 0.451613 0.02 -0.271861 17 14 497 402 60 60 0 0 AA 6.616995 22 0 610 0 KEEP + Loxhd1 YES AA_2 chr18 7910579 7910579 A T exonic Wac stopgain SNV NM_001282093:c.A541T:p.R181X exonic Wac stopgain SNV uc008eab.2:c.A541T:p.R181X exonic ENSMUSG00000024283 stopgain SNV ENSMUST00000170854:c.A220T:p.R74X 18qA1 NA NA chr18 7910579 AGCxGAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 131 1 0 52.994282 0.384615 0.02 1.337477 32 20 931 585 60 60 0 0 AA 21.353278 71 0 1933 0 KEEP + Wac YES AA_2 chr18 82508554 82508554 T A intergenic "Mir5127(dist=319735),Galr1(dist=53334)" NA NA intergenic "AK046168(dist=395087),Galr1(dist=53334)" NA NA ncRNA_exonic ENSMUSG00000058625 NA NA 18qE3 "Score=0.988221;Name=No.36444,chr13:113383782" NA chr18 82508554 GATxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 343 2 41 39.33967 0.178218 0.02 2.701294 83 18 2399 513 60 60 0 0 TT 54.436622 181 0 4981 0 KEEP NA Mir5127 YES AA_2 chr19 10693755 10693755 G T exonic Ddb1 nonsynonymous SNV NM_015735:c.G1347T:p.M449I exonic Ddb1 nonsynonymous SNV uc008gqm.1:c.G1347T:p.M449I exonic ENSMUSG00000024740 nonsynonymous SNV ENSMUST00000025649:c.G1347T:p.M449I 19qA NA NA chr19 10693755 GATxGGC G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 127 0 0 56.142411 0.456522 0.02 -0.403413 25 21 735 599 60 60 0 0 GG 18.047708 60 0 1698 0 KEEP + Ddb1 NO AA_2 chr19 12838903 12838903 T A ncRNA_intronic U05342 NA NA intronic Cntf NA NA intronic "ENSMUSG00000024695,ENSMUSG00000079415" NA NA 19qA NA NA chr19 12838903 CCAxATC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 51 0 0 6.561995 0.15 0.02 -0.175366 17 3 467 88 60 60 0 0 TT 8.337977 28 0 707 0 KEEP - U05342 YES AA_2 chr19 12899531 12899531 T A intronic Lpxn NA NA intronic Lpxn NA NA intronic ENSMUSG00000024696 NA NA 19qA NA NA chr19 12899531 TGCxTTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 86 0 0 63.368204 0.534884 0.02 -0.377106 20 23 587 653 60 60 0 0 TT 11.43049 38 0 1067 0 KEEP + Lpxn YES AA_2 chr19 13138671 13138671 T A exonic Olfr1454 nonsynonymous SNV NM_146692:c.T769A:p.Y257N exonic Olfr1454 nonsynonymous SNV uc008gvc.1:c.T769A:p.Y257N exonic ENSMUSG00000060593 nonsynonymous SNV ENSMUST00000073732:c.T769A:p.Y257N 19qA "Score=0.919641;Name=No.72626,chr19:13101855" NA chr19 13138671 ATGxACT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 181 0 0 62.168674 0.358209 0.02 1.205985 43 24 1194 697 60 60 0 0 TT 27.054339 90 0 2373 0 KEEP + Olfr1454 YES AA_2 chr19 13309033 13309033 T C exonic Olfr1463 nonsynonymous SNV NM_001011840:c.T292C:p.C98R exonic Olfr1463 nonsynonymous SNV uc008gvh.1:c.T292C:p.C98R exonic ENSMUSG00000052277 nonsynonymous SNV ENSMUST00000064102:c.T292C:p.C98R 19qA NA NA chr19 13309033 AGCxGTG T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 195 2 0 8.709237 0.072464 0.02 1.188541 64 5 1850 141 60 60 0 0 TT 30.061962 100 0 2746 0 KEEP + Olfr1463 NO AA_2 chr19 17473177 17473177 G T intronic Rfk NA NA intronic Rfk NA NA intronic ENSMUSG00000024712 NA NA 19qB NA NA chr19 17473177 AGAxTTT G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612341 0.612407 0.999892 51 0 0 8.592563 0.148148 0.02 -0.236774 23 4 647 116 60 60 0 0 GG 6.917341 23 0 628 0 KEEP + Rfk NO AA_2 chr19 29374013 29374013 A T exonic Jak2 nonsynonymous SNV NM_001048177:c.A2479T:p.I827L exonic Jak2 nonsynonymous SNV uc008hdc.1:c.A2479T:p.I827L exonic ENSMUSG00000024789 nonsynonymous SNV ENSMUST00000025705:c.A2479T:p.I827L 19qC1 NA NA chr19 29374013 AGAxTAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 58 0 0 14.717684 0.315789 0.02 -0.166582 13 6 362 170 60 60 0 0 AA 9.92561 33 0 912 0 KEEP + Jak2 YES AA_2 chr19 3272936 3272936 T A exonic Ighmbp2 nonsynonymous SNV NM_009212:c.A1009T:p.I337L exonic Ighmbp2 nonsynonymous SNV uc008fwa.1:c.A1009T:p.I337L exonic ENSMUSG00000024831 nonsynonymous SNV ENSMUST00000025751:c.A1009T:p.I337L 19qA NA NA chr19 3272936 CTAxGGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 83 0 0 49.569613 0.473684 0.02 -0.333256 20 18 567 524 60 60 0 0 TT 10.810409 36 0 948 0 KEEP - Ighmbp2 YES AA_2 chr19 41682899 41682899 G T exonic Slit1 nonsynonymous SNV NM_015748:c.C3250A:p.Q1084K exonic Slit1 nonsynonymous SNV uc008hmf.2:c.C3250A:p.Q1084K exonic ENSMUSG00000025020 nonsynonymous SNV ENSMUST00000025993:c.C3250A:p.Q1084K 19qC3 NA NA chr19 41682899 CCTxATT G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 149 2 0 95.181961 0.566667 0.02 1.267327 26 34 774 968 60 60 0 0 GG 19.554461 65 0 1874 0 KEEP - Slit1 NO AA_2 chr19 41941266 41941266 T A intronic Rrp12 NA NA intronic Rrp12 NA NA intronic ENSMUSG00000035049 NA NA 19qC3 NA NA chr19 41941266 CTAxAGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 80 0 0 37.409919 0.424242 0.02 -0.289393 19 14 529 405 60 60 0 0 TT 9.923037 33 0 878 0 KEEP - Rrp12 YES AA_2 chr19 43566308 43566308 A T exonic Cnnm1 nonsynonymous SNV NM_031396:c.A2579T:p.E860V exonic Cnnm1 nonsynonymous SNV uc008hoh.2:c.A2579T:p.E860V exonic ENSMUSG00000025189 nonsynonymous SNV ENSMUST00000165311:c.A2579T:p.E860V 19qC3 NA NA chr19 43566308 TGGxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.457697 0.457757 0.999869 50 0 0 29.422396 0.5 0.02 -0.192936 11 11 324 308 60 60 0 0 AA 6.316804 21 0 589 0 KEEP + Cnnm1 YES AA_2 chr19 45126568 45126568 G T intronic Sfxn3 NA NA intronic Sfxn3 NA NA intronic ENSMUSG00000025212 NA NA 19qC3 NA NA chr19 45126568 CCAxCCT G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 67 5 0 27.813794 0.478261 0.02 -0.201521 12 11 360 295 60 60 0 0 GG 9.926576 33 0 931 0 KEEP + Sfxn3 NO AA_2 chr19 46744213 46744213 T A exonic Cyp17a1 nonsynonymous SNV NM_007809:c.A749T:p.K250M exonic Cyp17a1 nonsynonymous SNV uc008hua.2:c.A749T:p.K250M exonic ENSMUSG00000003555 nonsynonymous SNV ENSMUST00000026012:c.A749T:p.K250M 19qC3 NA NA chr19 46744213 ACCxTGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 185 2 0 61.317702 0.433962 0.02 1.328734 30 23 874 661 60 60 0 0 TT 30.980481 103 0 2870 0 KEEP - Cyp17a1 YES AA_2 chr19 4841294 4841294 T A exonic Ccdc87 nonsynonymous SNV NM_207268:c.T1813A:p.F605I exonic Ccdc87 nonsynonymous SNV uc008gbb.1:c.T1813A:p.F605I exonic ENSMUSG00000067872 nonsynonymous SNV ENSMUST00000088653:c.T1813A:p.F605I 19qA NA NA chr19 4841294 TCCxTTC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 109 0 0 43.549861 0.369565 0.02 -0.403428 29 17 849 486 60 60 0 0 TT 15.641391 52 0 1455 0 KEEP + Ccdc87 YES AA_2 chr19 6083979 6083979 T A exonic Zfpl1 nonsynonymous SNV NM_024231:c.A184T:p.S62C exonic Zfpl1 nonsynonymous SNV uc008ghg.1:c.A184T:p.S62C exonic ENSMUSG00000024792 nonsynonymous SNV ENSMUST00000025707:c.A184T:p.S62C 19qA NA NA chr19 6083979 GACxGGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 223 3 0 124.481336 0.474227 0.02 0.942967 51 46 1499 1317 60 60 0 0 TT 26.764887 89 0 2453 0 KEEP - Zfpl1 YES AA_2 chr19 8460993 8460993 G C exonic Slc22a30 nonsynonymous SNV NM_177002:c.C719G:p.A240G exonic C730048C13Rik nonsynonymous SNV uc008glx.1:c.C719G:p.A240G exonic ENSMUSG00000052562 nonsynonymous SNV ENSMUST00000064507:c.C719G:p.A240G 19qA "Score=0.974914;Name=No.72589,chr19:8179867" NA chr19 8460993 GCAxCAC G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 281 0 0 24.538333 0.116505 0.02 2.674935 91 12 2684 349 60 60 0 0 GG 44.796438 149 0 4129 0 KEEP - Slc22a30 NO AA_2 chr1 130133234 130133234 A T exonic R3hdm1 nonsynonymous SNV NM_181750:c.A3307T:p.S1103C exonic R3hdm1 nonsynonymous SNV uc011wrb.1:c.A3199T:p.S1067C exonic ENSMUSG00000056211 nonsynonymous SNV ENSMUST00000097596:c.A3205T:p.S1069C 1qE4 NA NA chr1 130133234 CAGxGTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 221 0 0 52.101535 0.216981 0.02 2.452035 83 23 2444 652 60 60 0 0 AA 30.898942 103 0 2772 0 KEEP + R3hdm1 YES AA_2 chr1 132771684 132771684 G A exonic Faim3 stopgain SNV NM_026976:c.G456A:p.W152X exonic Faim3 stopgain SNV uc007cmn.1:c.G456A:p.W152X exonic ENSMUSG00000042474 stopgain SNV ENSMUST00000038829:c.G456A:p.W152X 1qE4 NA NA chr1 132771684 CTGxCTC G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 0.999999 61 0 0 11.730548 0.263158 0.02 -0.166634 14 5 412 141 60 60 0 0 GG 10.827583 36 0 991 0 KEEP + Faim3 NO AA_2 chr1 133821207 133821207 C T exonic Nucks1 nonsynonymous SNV NM_001145804:c.C218T:p.S73F exonic Nucks1 nonsynonymous SNV uc007cnx.2:c.C218T:p.S73F exonic ENSMUSG00000026434 nonsynonymous SNV ENSMUST00000062264:c.C218T:p.S73F 1qE4 NA NA chr1 133821207 ATTxTCA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043781 0.043787 0.999863 33 2 0 8.05476 0.428571 0.02 -0.061396 4 3 122 87 60 60 0 0 CC 6.007331 20 0 560 0 KEEP + Nucks1 NO AA_2 chr1 135195461 135195461 T C intronic Plekha6 NA NA intronic Plekha6 NA NA intronic ENSMUSG00000041757 NA NA 1qE4 NA NA chr1 135195461 TTGxCTC T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 339 0 0 88.931747 0.417722 0.02 1.191023 46 33 1289 965 60 60 0 0 TT 64.019491 213 0 5724 0 KEEP + Plekha6 NO AA_2 chr1 135255880 135255880 A T intronic "Ren1,Ren2" NA NA intronic Ren1 NA NA intronic ENSMUSG00000070645 NA NA 1qE4 NA NA chr1 135255880 TCCxCCC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 182 0 0 19.732449 0.258065 0.02 1.267443 23 8 636 236 60 60 0 0 AA 31.257272 104 0 2743 0 KEEP + Ren1 YES AA_2 chr1 135554301 135554301 G C exonic Zbed6 nonsynonymous SNV NM_001166552:c.C1874G:p.A625G exonic Zbed6 nonsynonymous SNV uc007cqr.2:c.C1874G:p.A625G intronic ENSMUSG00000026464 NA NA 1qE4 NA NA chr1 135554301 CGGxCTT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 90 2 0 14.964377 0.230769 0.02 -0.228025 20 6 578 182 60 60 0 0 GG 13.529665 45 0 1225 0 KEEP - Zbed6 NO AA_2 chr1 135975663 135975663 G C UTR5 Btg2 NA NA UTR5 Btg2 NA NA UTR5 ENSMUSG00000020423 NA NA 1qE4 NA NA chr1 135975663 AACxATG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 141 0 0 19.126839 0.2 0.02 -0.350804 32 8 933 240 60 60 0 0 GG 22.47869 75 0 1991 0 KEEP - Btg2 NO AA_2 chr1 136093936 136093936 C A exonic Mybph synonymous SNV NM_016749:c.C624A:p.P208P exonic Mybph synonymous SNV uc007crh.1:c.C624A:p.P208P exonic ENSMUSG00000042451 synonymous SNV ENSMUST00000038445:c.C624A:p.P208P 1qE4 NA NA chr1 136093936 GCCxAAG C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 95 0 0 54.673309 0.59375 0.02 -0.280645 13 19 379 550 60 60 0 0 CC 14.225451 50 1 1400 7 KEEP + Mybph NO AA_2 chr1 136214361 136214361 C A intronic Ppfia4 NA NA intronic Ppfia4 NA NA intronic ENSMUSG00000026458 NA NA 1qE4 NA NA chr1 136214361 GGCxTCT C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 129 0 0 19.525293 0.214286 0.02 -0.367979 33 9 949 247 60 60 0 0 CC 19.250913 64 0 1799 0 KEEP - Ppfia4 NO AA_2 chr1 136897023 136897023 C G intronic Lgr6 NA NA intronic Lgr6 NA NA intronic ENSMUSG00000042793 NA NA 1qE4 NA NA chr1 136897023 AGGxCAG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 DBSNP COVERED 0.739671 0.739671 1 125 0 0 13.758592 0.1875 0.02 -0.280649 26 6 760 176 60 60 0 0 CC 20.316944 71 1 1962 9 KEEP - Lgr6 NO AA_2 chr1 137013008 137013008 C T exonic Ptprv unknown UNKNOWN exonic Ptprv synonymous SNV uc007csr.2:c.G3318A:p.R1106R intergenic "ENSMUSG00000066885(dist=4125),ENSMUSG00000031506(dist=16294)" NA NA 1qE4 NA NA chr1 137013008 TGAxCTG C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.260399 0.260965 0.997832 37 0 0 7.278567 0.3 0.02 -0.140317 7 3 202 85 60 60 0 0 CC 4.81192 16 0 435 0 KEEP - Ptprv NO AA_2 chr1 138178568 138178568 A C exonic Camsap2 nonsynonymous SNV NM_001081360:c.T1780G:p.L594V exonic Camsap1l1 nonsynonymous SNV uc011wsz.1:c.T271G:p.L91V exonic ENSMUSG00000041570 nonsynonymous SNV ENSMUST00000094523:c.T1729G:p.L577V 1qE4 NA NA chr1 138178568 TTAxGTT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 75 0 0 21.741457 0.357143 0.02 -0.245499 18 10 522 249 60 60 0 0 AA 12.329369 41 0 1139 0 KEEP - Camsap2 NO AA_2 chr1 14888374 14888374 T C exonic Trpa1 nonsynonymous SNV NM_177781:c.A1330G:p.S444G exonic Trpa1 nonsynonymous SNV uc007ajc.1:c.A1330G:p.S444G exonic ENSMUSG00000032769 nonsynonymous SNV ENSMUST00000041447:c.A1330G:p.S444G 1qA3 NA NA chr1 14888374 TACxTTT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 54 0 0 23.458538 0.321429 0.02 -0.245572 19 9 553 268 60 60 0 0 TT 7.517991 25 0 693 0 KEEP - Trpa1 NO AA_2 chr1 15057185 15057185 T A intergenic "Trpa1(dist=148242),Kcnb2(dist=245348)" NA NA intergenic "Trpa1(dist=148242),AK195788(dist=201526)" NA NA intergenic "ENSMUSG00000088159(dist=47945),ENSMUSG00000073737(dist=201695)" NA NA 1qA3 NA NA chr1 15057185 CCAxTGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 200 0 0 73.978177 0.459016 0.02 1.160311 33 28 936 789 60 60 0 0 TT 30.711184 106 1 2861 10 KEEP NA Trpa1 YES AA_2 chr1 152410661 152410661 T A exonic Hmcn1 nonsynonymous SNV NM_001024720:c.A16901T:p.Y5634F exonic Hmcn1 nonsynonymous SNV uc007cyj.1:c.A16901T:p.Y5634F exonic ENSMUSG00000066842 nonsynonymous SNV ENSMUST00000137197:c.A16550T:p.Y5517F 1qG1 NA NA chr1 152410661 TAGxACG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 133 0 0 47.424976 0.459459 0.02 -0.324483 20 17 558 504 60 60 0 0 TT 21.952631 73 0 1957 0 KEEP - Hmcn1 YES AA_2 chr1 152612585 152612585 T A exonic Hmcn1 nonsynonymous SNV NM_001024720:c.A2273T:p.K758M exonic Hmcn1 nonsynonymous SNV uc007cyj.1:c.A2273T:p.K758M exonic ENSMUSG00000066842 nonsynonymous SNV ENSMUST00000074783:c.A2273T:p.K758M 1qG1 NA NA chr1 152612585 ATCxTCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 74 2 0 23.11512 0.391304 0.02 -0.201455 14 9 385 255 60 60 0 0 TT 12.608435 42 0 1137 0 KEEP + Hmcn1 YES AA_2 chr1 157806935 157806935 T A exonic Cep350 nonsynonymous SNV NM_001039184:c.A144T:p.E48D exonic Cep350 nonsynonymous SNV uc007dbs.2:c.A144T:p.E48D exonic ENSMUSG00000033671 nonsynonymous SNV ENSMUST00000138762:c.A144T:p.E48D 1qG3 NA NA chr1 157806935 TACxTCT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 118 2 0 35.419841 0.378378 0.02 -0.324483 23 14 670 394 60 60 0 0 TT 17.745345 59 0 1641 0 KEEP - Cep350 YES AA_2 chr1 15833131 15833131 A T exonic Terf1 stopgain SNV NM_009352:c.A1234T:p.R412X exonic Terf1 stopgain SNV uc007aji.1:c.A1147T:p.R383X exonic ENSMUSG00000025925 stopgain SNV ENSMUST00000093770:c.A1147T:p.R383X 1qA3 NA NA chr1 15833131 TGGxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 56 0 0 9.631114 0.266667 0.02 -0.131558 11 4 327 115 60 60 0 0 AA 8.723039 29 0 810 0 KEEP + Terf1 YES AA_2 chr1 161098577 161098577 A T intergenic "Pappa2(dist=211008),Rfwd2(dist=63880)" NA NA intergenic "AK016192(dist=2059),Rfwd2(dist=63880)" NA NA exonic ENSMUSG00000061992 stopgain SNV ENSMUST00000077309:c.T197A:p.L66X 1qH1 NA NA chr1 161098577 ACCxAGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 177 0 0 73.024026 0.490909 0.02 1.302444 28 27 801 767 60 60 0 0 AA 32.770544 109 0 2944 0 KEEP NA Pappa2 YES AA_2 chr1 162154392 162154392 T A exonic Rabgap1l synonymous SNV NM_001038621:c.A1068T:p.P356P exonic Rabgap1l synonymous SNV uc007deh.1:c.A1068T:p.P356P exonic ENSMUSG00000026721 synonymous SNV ENSMUST00000028052:c.A1068T:p.P356P 1qH2.1 NA NA chr1 162154392 TAGxGGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 103 3 0 45.870947 0.418605 0.02 -0.385475 25 18 681 500 60 60 0 0 TT 12.617713 42 0 1096 0 KEEP - Rabgap1l YES AA_2 chr1 173270916 173270916 A G intronic Dedd NA NA intronic Dedd NA NA UTR3 ENSMUSG00000013997 NA NA 1qH3 NA NA chr1 173270916 TGTxAAC A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 41 0 0 33.831444 0.6875 0.02 -0.14909 5 11 137 329 60 70 0 0 AA 6.914452 23 0 600 0 KEEP + Dedd NO AA_2 chr1 173705074 173705074 T A exonic Slamf1 synonymous SNV NM_013730:c.T237A:p.I79I exonic Slamf1 synonymous SNV uc007dpb.1:c.T237A:p.I79I exonic ENSMUSG00000015316 synonymous SNV ENSMUST00000015460:c.T237A:p.I79I 1qH3 NA NA chr1 173705074 AATxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.99986 34 0 0 20.406375 0.636364 0.02 -0.096471 4 7 117 202 60 60 0 0 TT 5.714772 19 0 525 0 KEEP + Slamf1 YES AA_2 chr1 174427558 174427558 G T exonic Igsf9 nonsynonymous SNV NM_001145800:c.G2911T:p.D971Y exonic Igsf9 nonsynonymous SNV uc007dqn.2:c.G2911T:p.D971Y exonic ENSMUSG00000037995 nonsynonymous SNV ENSMUST00000052629:c.G2911T:p.D971Y 1qH3 NA NA chr1 174427558 CCAxACT G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 85 0 0 43.405837 0.435897 0.02 -0.342021 22 17 651 469 60 60 0 0 GG 11.429797 38 0 1073 0 KEEP + Igsf9 NO AA_2 chr1 178680118 178680118 G T exonic Cep170 synonymous SNV NM_001099637:c.C3820A:p.R1274R exonic "Cep170,mKIAA0470" synonymous SNV uc007dub.1:c.C28A:p.R10R exonic ENSMUSG00000057335 synonymous SNV ENSMUST00000164840:c.C49A:p.R17R 1qH4 NA NA chr1 178680118 TTCxGTG G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 97 0 0 66.784962 0.6875 0.02 -0.280414 10 22 249 649 60 60 0 0 GG 14.722548 49 0 1224 0 KEEP - Cep170 NO AA_2 chr1 181710979 181710979 T A intronic Ahctf1 NA NA intronic Ahctf1 NA NA intronic ENSMUSG00000026491 NA NA 1qH4 NA NA chr1 181710979 AACxACG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 39 0 0 24.540812 0.8 0.02 -0.087699 2 8 58 229 60 60 0 0 TT 7.217729 24 0 661 0 KEEP - Ahctf1 YES AA_2 chr1 182823505 182823505 T A exonic Lefty2 nonsynonymous SNV NM_177099:c.T191A:p.L64Q exonic Lefty2 nonsynonymous SNV uc007dwu.1:c.T191A:p.L64Q exonic ENSMUSG00000066652 nonsynonymous SNV ENSMUST00000085797:c.T191A:p.L64Q 1qH4 NA NA chr1 182823505 CCCxGCT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 50 0 0 24.815914 0.45 0.02 -0.175408 11 9 321 265 60 60 0 0 TT 7.218301 24 0 659 0 KEEP + Lefty2 YES AA_2 chr1 183060618 183060618 A T intronic Nvl NA NA intronic Nvl NA NA intronic ENSMUSG00000026516 NA NA 1qH4 NA NA chr1 183060618 AAAxAGG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 76 2 0 22.406623 0.391304 0.02 -0.201702 14 9 407 248 60 60 0 0 AA 13.214537 44 0 1205 0 KEEP - Nvl YES AA_2 chr1 191970965 191970965 A T exonic Prox1 nonsynonymous SNV NM_008937:c.T1894A:p.Y632N exonic Prox1 nonsynonymous SNV uc007ebb.1:c.T1894A:p.Y632N exonic ENSMUSG00000010175 nonsynonymous SNV ENSMUST00000010319:c.T1894A:p.Y632N 1qH6 NA NA chr1 191970965 TATxGTA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 98 0 0 44.098059 0.5 0.02 -0.280635 16 16 458 461 60 60 0 0 AA 15.000397 50 0 1344 0 KEEP - Prox1 YES AA_2 chr1 32714382 32714382 A C exonic Khdrbs2 nonsynonymous SNV NM_133235:c.A1046C:p.Y349S exonic Khdrbs2 nonsynonymous SNV uc007anp.1:c.A1046C:p.Y349S exonic ENSMUSG00000026058 nonsynonymous SNV ENSMUST00000027226:c.A1046C:p.Y349S 1qB NA NA chr1 32714382 GATxTTG A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 38 0 0 25.674564 0.5 0.02 -0.157857 9 9 252 268 60 60 0 0 AA 4.811191 16 0 427 0 KEEP + Khdrbs2 NO AA_2 chr1 36468446 36468446 T A exonic Fer1l5 nonsynonymous SNV NM_001277076:c.T3679A:p.C1227S intergenic "4632411B12Rik(dist=42420),AK132955(dist=5287)" NA NA intergenic "ENSMUSG00000010453(dist=42420),ENSMUSG00000037432(dist=5287)" NA NA 1qB NA NA chr1 36468446 CCCxGTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490475 0.490544 0.999859 49 0 0 15.257169 0.3 0.02 -0.201721 14 6 412 177 60 60 0 0 TT 5.414057 18 0 500 0 KEEP NA Fer1l5 YES AA_2 chr1 43132128 43132128 T G exonic Tgfbrap1 nonsynonymous SNV NM_001013025:c.A656C:p.Q219P exonic Tgfbrap1 nonsynonymous SNV uc007ave.1:c.A656C:p.Q219P exonic ENSMUSG00000070939 nonsynonymous SNV ENSMUST00000114756:c.A656C:p.Q219P 1qB NA NA chr1 43132128 TCCxGTC T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 132 0 0 85.905233 0.557377 0.02 1.357388 27 34 792 879 60 60 0 0 TT 18.929956 63 0 1710 0 KEEP - Tgfbrap1 NO AA_2 chr1 44215132 44215132 A G intronic Ercc5 NA NA intronic Ercc5 NA NA intronic ENSMUSG00000026048 NA NA 1qC1.1 NA NA chr1 44215132 CAGxCAC A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 42 0 0 13.223957 0.384615 0.02 -0.114001 8 5 221 146 60 60 0 0 AA 6.916188 23 0 622 0 KEEP + Ercc5 NO AA_2 chr1 57958910 57958910 T G intronic Spats2l NA NA intronic Spats2l NA NA intronic ENSMUSG00000038305 NA NA 1qC1.3 NA NA chr1 57958910 ATTxTTT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 62 0 0 19.137461 0.411765 0.02 -0.149097 10 7 290 208 60 60 0 0 TT 11.429592 38 0 1052 0 KEEP + Spats2l NO AA_2 chr1 58154823 58154823 A T exonic Aox1 nonsynonymous SNV NM_009676:c.A3527T:p.K1176M exonic Aox1 nonsynonymous SNV uc007bbl.1:c.A3527T:p.K1176M exonic ENSMUSG00000063558 nonsynonymous SNV ENSMUST00000001027:c.A3527T:p.K1176M 1qC1.3 NA NA chr1 58154823 ATAxGGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 41 0 0 35.749016 0.705882 0.02 -0.14909 5 12 145 345 60 60 0 0 AA 6.316853 21 0 590 0 KEEP + Aox1 YES AA_2 chr1 62815685 62815685 A T exonic Nrp2 nonsynonymous SNV NM_001077403:c.A1898T:p.E633V exonic Nrp2 nonsynonymous SNV uc007bfp.1:c.A44T:p.E15V exonic ENSMUSG00000025969 nonsynonymous SNV ENSMUST00000027112:c.A1898T:p.E633V 1qC2 NA NA chr1 62815685 TTGxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119538 0.120436 0.99254 21 0 0 15.361715 0.545455 0.02 -0.0964 5 6 150 158 60 60 0 0 AA 2.706798 9 0 249 0 KEEP + Nrp2 YES AA_2 chr1 63757733 63757733 A C exonic Mdh1b nonsynonymous SNV NM_029696:c.T1364G:p.L455R exonic Mdh1b nonsynonymous SNV uc007bgj.1:c.T1364G:p.L455R exonic ENSMUSG00000025963 nonsynonymous SNV ENSMUST00000027104:c.T992G:p.L331R 1qC2 NA NA chr1 63757733 ACAxGTT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 56 0 0 22.169045 0.5 0.02 -0.157821 9 9 267 233 60 60 0 0 AA 8.722876 29 0 809 0 KEEP - Mdh1b NO AA_2 chr1 73972062 73972062 T A exonic Tns1 nonsynonymous SNV NM_027884:c.A4007T:p.H1336L exonic Tns1 nonsynonymous SNV uc007blf.2:c.A215T:p.H72L exonic ENSMUSG00000055322 nonsynonymous SNV ENSMUST00000068832:c.A215T:p.H72L 1qC3 NA NA chr1 73972062 CTGxGTC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 131 2 0 32.196018 0.265306 0.02 -0.429571 36 13 1011 383 60 60 0 0 TT 18.043232 60 0 1617 0 KEEP - Tns1 YES AA_2 chr1 82490150 82490150 T A exonic Col4a4 synonymous SNV NM_007735:c.A2058T:p.P686P exonic Col4a4 synonymous SNV uc007brt.1:c.A2058T:p.P686P exonic ENSMUSG00000067158 synonymous SNV ENSMUST00000087050:c.A2058T:p.P686P 1qC5 NA NA chr1 82490150 CCCxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 116 0 0 40.385095 0.394737 0.02 -0.33328 23 15 677 443 60 60 0 0 TT 18.948481 63 0 1734 0 KEEP - Col4a4 YES AA_2 chr1 82651675 82651675 T A intronic Col4a3 NA NA intronic Col4a3 NA NA intronic ENSMUSG00000079465 NA NA 1qC5 NA NA chr1 82651675 CTGxAAC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423459 0.423478 0.999957 48 0 0 30.134398 0.52381 0.02 -0.184139 10 11 273 312 60 60 0 0 TT 7.817998 26 0 691 0 KEEP + Col4a3 YES AA_2 chr1 84909639 84909639 C G exonic Slc16a14 synonymous SNV NM_027921:c.G519C:p.G173G exonic Slc16a14 synonymous SNV uc007btd.1:c.G519C:p.G173G exonic ENSMUSG00000026220 synonymous SNV ENSMUST00000027422:c.G519C:p.G173G 1qC5 NA NA chr1 84909639 CGTxCCA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 116 2 0 32.956013 0.4 0.02 -0.271899 18 12 540 360 60 60 0 0 CC 21.04147 70 0 1937 0 KEEP - Slc16a14 NO AA_2 chr1 89366899 89366899 T A UTR5 3110079O15Rik NA NA UTR5 3110079O15Rik NA NA UTR5 ENSMUSG00000026258 NA NA 1qD NA NA chr1 89366899 TGCxCAC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 248 2 0 82.149214 0.508475 0.02 1.177792 29 30 852 856 60 60 0 0 TT 42.112771 140 0 3946 0 KEEP + 3110079O15Rik YES AA_2 chr1 9536938 9536938 G T UTR3 Rrs1 NA NA UTR3 Rrs1 NA NA UTR3 ENSMUSG00000061024 NA NA 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536938 CTTxACT G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 278 9 12 18.199267 0.130435 0.02 1.081288 60 9 1791 255 60 37 0 0 GG 41.529006 148 1 4229 28 KEEP + Rrs1 NO AA_2 chr2 117117675 117117675 A T exonic Rasgrp1 synonymous SNV NM_011246:c.T969A:p.V323V exonic Rasgrp1 synonymous SNV uc008lrl.1:c.T969A:p.V323V exonic ENSMUSG00000027347 synonymous SNV ENSMUST00000102534:c.T969A:p.V323V 2qE5 NA NA chr2 117117675 CAGxACC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 59 0 0 41.254233 0.625 0.02 -0.210452 9 15 258 410 60 60 0 0 AA 8.422192 28 0 781 0 KEEP - Rasgrp1 YES AA_2 chr2 117943281 117943281 A T exonic Thbs1 synonymous SNV NM_011580:c.A1185T:p.T395T exonic Thbs1 synonymous SNV uc008lrq.1:c.A1185T:p.T395T exonic ENSMUSG00000040152 synonymous SNV ENSMUST00000039559:c.A1185T:p.T395T 2qE5 NA NA chr2 117943281 CACxTGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 85 0 0 58.228181 0.606061 0.02 -0.289408 13 20 373 583 60 60 0 0 AA 12.329013 41 0 1093 0 KEEP + Thbs1 YES AA_2 chr2 118584978 118584978 T A exonic A430105I19Rik nonsynonymous SNV NM_001001982:c.A869T:p.H290L exonic A430105I19Rik nonsynonymous SNV uc012cbl.1:c.A245T:p.H82L exonic ENSMUSG00000045838 nonsynonymous SNV ENSMUST00000059997:c.A869T:p.H290L 2qE5 NA NA chr2 118584978 TTGxGGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 191 3 0 153.714925 0.671053 0.02 1.225641 25 51 714 1503 60 60 0 0 TT 23.739495 79 0 2096 0 KEEP - A430105I19Rik YES AA_2 chr2 119875829 119875829 T A intergenic "Pla2g4b(dist=7061),Ehd4(dist=39394)" NA NA intergenic "Pla2g4b(dist=7061),Ehd4(dist=39394)" NA NA exonic ENSMUSG00000074899 unknown UNKNOWN 2qE5 NA NA chr2 119875829 GTGxTAA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 81 2 0 29.152617 0.4 0.02 -0.263047 18 12 511 322 60 60 0 0 TT 11.73 39 0 1074 0 KEEP NA Pla2g4b YES AA_2 chr2 125173810 125173810 T A intronic Fbn1 NA NA intronic Fbn1 NA NA intronic ENSMUSG00000027204 NA NA 2qF1 NA NA chr2 125173810 ACCxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 165 0 0 38.944375 0.326087 0.02 -0.403421 31 15 906 444 60 60 0 0 TT 25.565087 85 0 2363 0 KEEP - Fbn1 YES AA_2 chr2 127417583 127417583 A T exonic Mrps5 nonsynonymous SNV NM_029963:c.A179T:p.H60L exonic Mrps5 nonsynonymous SNV uc008mft.1:c.A179T:p.H60L exonic ENSMUSG00000027374 nonsynonymous SNV ENSMUST00000028852:c.A179T:p.H60L 2qF1 NA NA chr2 127417583 ACCxCTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322793 0.322807 0.999957 51 0 0 35.445006 0.666667 0.02 -0.157845 6 12 170 347 60 60 0 0 AA 7.81924 26 0 703 0 KEEP + Mrps5 YES AA_2 chr2 13310515 13310515 T A exonic Cubn nonsynonymous SNV NM_001081084:c.A4301T:p.H1434L exonic Cubn nonsynonymous SNV uc008ijz.1:c.A4301T:p.H1434L exonic ENSMUSG00000026726 nonsynonymous SNV ENSMUST00000091436:c.A4301T:p.H1434L 2qA1 NA NA chr2 13310515 TCAxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 87 0 0 53.023504 0.5 0.02 -0.333253 19 19 536 554 60 60 0 0 TT 12.33003 41 0 1105 0 KEEP - Cubn YES AA_2 chr2 13367685 13367685 G A exonic Cubn synonymous SNV NM_001081084:c.C2535T:p.T845T exonic Cubn synonymous SNV uc008ijz.1:c.C2535T:p.T845T exonic ENSMUSG00000026726 synonymous SNV ENSMUST00000091436:c.C2535T:p.T845T 2qA1 NA NA chr2 13367685 GATxGTC G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 86 2 0 51.355363 0.642857 0.02 -0.245557 10 18 300 507 60 60 0 0 GG 15.040178 50 0 1427 0 KEEP - Cubn NO AA_2 chr2 143599633 143599633 A G ncRNA_intronic Gm12360 NA NA ncRNA_intronic AK034766 NA NA ncRNA_intronic ENSMUSG00000087115 NA NA 2qG1 NA NA chr2 143599633 CCCxCAG A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 109 0 0 18.262491 0.266667 0.02 -0.263069 22 8 627 220 60 60 0 0 AA 16.535105 55 0 1479 0 KEEP - Gm12360 NO AA_2 chr2 148607957 148607957 A G exonic 8030411F24Rik synonymous SNV NM_030135:c.A114G:p.S38S exonic "8030411F24Rik,Cst14" synonymous SNV uc008mtm.1:c.A114G:p.S38S exonic ENSMUSG00000027444 synonymous SNV ENSMUST00000028933:c.A114G:p.S38S 2qG3 NA NA chr2 148607957 ATCxGTA A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 56 0 0 16.433594 0.333333 0.02 -0.184155 14 7 410 189 60 60 0 0 AA 9.324493 31 0 864 0 KEEP + 8030411F24Rik NO AA_2 chr2 153750524 153750524 A T exonic Bpifb3 nonsynonymous SNV NM_194357:c.A610T:p.S204C exonic Rya3 nonsynonymous SNV uc008nip.1:c.A610T:p.S204C exonic ENSMUSG00000068008 nonsynonymous SNV ENSMUST00000088950:c.A610T:p.S204C 2qH1 NA NA chr2 153750524 CTGxGTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 112 0 0 19.130521 0.258065 0.02 -0.289412 23 8 672 230 60 60 0 0 AA 17.746984 59 0 1655 0 KEEP + Bpifb3 YES AA_2 chr2 154087664 154087664 A T exonic Bpifb9a nonsynonymous SNV NM_175167:c.A290T:p.Q97L exonic 4833413D08Rik nonsynonymous SNV uc008niz.1:c.A290T:p.Q97L exonic ENSMUSG00000067998 nonsynonymous SNV ENSMUST00000088924:c.A290T:p.Q97L 2qH1 "Score=0.978307;Name=No.75414,chr2:154129632" NA chr2 154087664 CACxGAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 254 3 51 91.263061 0.62 0.02 -0.438525 19 31 562 909 60 60 0 0 AA 42.105756 140 0 3881 0 KEEP + Bpifb9a YES AA_2 chr2 154388723 154388723 T A exonic E2f1 nonsynonymous SNV NM_007891:c.A661T:p.I221F exonic E2f1 nonsynonymous SNV uc008njk.1:c.A661T:p.I221F exonic ENSMUSG00000027490 nonsynonymous SNV ENSMUST00000000894:c.A526T:p.I176F 2qH1 NA NA chr2 154388723 AGAxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139529 0.139832 0.997832 29 0 0 23.998038 0.666667 0.02 -0.105243 4 8 114 235 60 60 0 0 TT 4.811157 16 0 424 0 KEEP - E2f1 YES AA_2 chr2 155770599 155770599 A T exonic Gdf5 nonsynonymous SNV NM_008109:c.T193A:p.Y65N exonic Gdf5 nonsynonymous SNV uc012chg.1:c.T193A:p.Y65N exonic ENSMUSG00000038259 nonsynonymous SNV ENSMUST00000040162:c.T193A:p.Y65N 2qH1 NA NA chr2 155770599 CATxGAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 73 0 0 10.969405 0.15625 0.02 -0.280214 27 5 758 146 60 60 0 0 AA 9.023015 30 0 830 0 KEEP - Gdf5 YES AA_2 chr2 155873607 155873607 A T exonic Fer1l4 nonsynonymous SNV NM_001136556:c.T875A:p.I292K exonic Fer1l4 nonsynonymous SNV uc012cho.1:c.T875A:p.I292K exonic ENSMUSG00000013338 nonsynonymous SNV ENSMUST00000109611:c.T875A:p.I292K 2qH1 NA NA chr2 155873607 GTTxTCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 113 0 0 67.543199 0.638889 0.02 -0.315712 13 23 362 668 60 60 0 0 AA 18.041746 60 0 1592 0 KEEP - Fer1l4 YES AA_2 chr2 157155265 157155265 A T UTR3 Ghrh NA NA UTR3 Ghrh NA NA UTR3 ENSMUSG00000027643 NA NA 2qH1 NA NA chr2 157155265 TACxGAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 95 0 0 21.981265 0.243243 0.02 -0.324487 28 9 804 266 70 70 0 0 AA 12.927596 43 0 1166 0 KEEP - Ghrh YES AA_2 chr2 162913026 162913026 A T exonic Gtsf1l nonsynonymous SNV NM_026630:c.T272A:p.L91Q exonic Gtsf1l nonsynonymous SNV uc008nsm.1:c.T272A:p.L91Q exonic ENSMUSG00000070708 nonsynonymous SNV ENSMUST00000094653:c.T272A:p.L91Q 2qH2 NA NA chr2 162913026 TGTxGTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 111 0 0 28.860905 0.26087 0.02 -0.403424 34 12 987 346 60 60 0 0 AA 16.822685 56 0 1494 0 KEEP - Gtsf1l YES AA_2 chr2 166405770 166405770 A T exonic Prex1 nonsynonymous SNV NM_177782:c.T3695A:p.M1232K exonic Prex1 nonsynonymous SNV uc008nym.1:c.T131A:p.M44K exonic ENSMUSG00000039621 nonsynonymous SNV ENSMUST00000109246:c.T131A:p.M44K 2qH3 NA NA chr2 166405770 CTCxTCA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 97 0 0 73.630661 0.625 0.02 -0.3508 15 25 423 732 60 60 0 0 AA 12.93063 43 0 1152 0 KEEP - Prex1 YES AA_2 chr2 167247192 167247192 C A upstream Slc9a8 NA NA upstream "NHE8,Slc9a8" NA NA upstream ENSMUSG00000039463 NA NA 2qH3 NA NA chr2 167247192 GGCxCCG C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 109 2 0 23.262359 0.263158 0.02 -0.33319 28 10 801 280 60 60 0 0 CC 16.172846 54 0 1439 0 KEEP NA Slc9a8 NO AA_2 chr2 180067176 180067176 A T exonic Gata5 nonsynonymous SNV NM_008093:c.T545A:p.V182E exonic Gata5 nonsynonymous SNV uc008oix.2:c.T545A:p.V182E exonic ENSMUSG00000015627 nonsynonymous SNV ENSMUST00000015771:c.T545A:p.V182E 2qH4 NA NA chr2 180067176 GGTxCTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 146 0 0 39.941844 0.280702 0.02 1.284962 41 16 1141 470 60 60 0 0 AA 19.606508 68 1 1787 7 KEEP - Gata5 YES AA_2 chr2 180937027 180937027 A T exonic Ptk6 stopgain SNV NM_009184:c.T183A:p.Y61X exonic Ptk6 stopgain SNV uc008olk.1:c.T183A:p.Y61X exonic ENSMUSG00000038751 stopgain SNV ENSMUST00000016511:c.T183A:p.Y61X 2qH4 NA NA chr2 180937027 CACxTAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 183 4 0 31.505822 0.25 0.02 1.337495 39 13 1115 380 60 60 0 0 AA 28.554239 95 0 2550 0 KEEP - Ptk6 YES AA_2 chr2 181730612 181730612 A C exonic Gm14496 nonsynonymous SNV NM_001205282:c.A773C:p.K258T intergenic "Polr3k(dist=125081),NONE(dist=NONE)" NA NA exonic ENSMUSG00000053277 nonsynonymous SNV ENSMUST00000089788:c.A773C:p.K258T 2qH4 NA NA chr2 181730612 ATAxACA A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 321 11 3 8.581051 0.068493 0.02 1.04624 68 5 1970 141 60 23 0 0 AA 63.163834 210 0 5816 0 KEEP NA Gm14496 NO AA_2 chr2 24261326 24261326 A T exonic Psd4 nonsynonymous SNV NM_177611:c.A2736T:p.L912F exonic Psd4 nonsynonymous SNV uc008ioz.1:c.A2736T:p.L912F exonic ENSMUSG00000026979 nonsynonymous SNV ENSMUST00000056641:c.A2736T:p.L912F 2qA3 NA NA chr2 24261326 CTTxCGG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 97 0 0 13.502332 0.171429 0.02 -0.306907 29 6 798 176 60 60 0 0 AA 13.228447 44 0 1163 0 KEEP + Psd4 YES AA_2 chr2 25532728 25532728 T A exonic Lcn6 nonsynonymous SNV NM_001276448:c.T220A:p.S74T exonic Lcn6 nonsynonymous SNV uc012bse.1:c.T220A:p.S74T exonic ENSMUSG00000045684 nonsynonymous SNV ENSMUST00000114199:c.T220A:p.S74T 2qA3 NA NA chr2 25532728 GAGxCCT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 60 2 0 8.96318 0.210526 0.02 -0.166629 15 4 435 113 60 60 0 0 TT 9.021683 30 0 815 0 KEEP + Lcn6 YES AA_2 chr2 25702676 25702676 T A exonic Sohlh1 stopgain SNV NM_001001714:c.A40T:p.R14X exonic Sohlh1 stopgain SNV uc008itn.1:c.A40T:p.R14X exonic ENSMUSG00000059625 stopgain SNV ENSMUST00000076989:c.A40T:p.R14X 2qA3 NA NA chr2 25702676 CTCxGTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 253 0 0 155.442155 0.728571 0.02 1.278284 19 51 550 1489 60 60 0 0 TT 41.482563 138 0 3766 0 KEEP - Sohlh1 YES AA_2 chr2 27389355 27389355 A T exonic Wdr5 nonsynonymous SNV NM_080848:c.A884T:p.Q295L exonic Wdr5 nonsynonymous SNV uc012bsw.1:c.A884T:p.Q295L exonic ENSMUSG00000026917 nonsynonymous SNV ENSMUST00000113952:c.A884T:p.Q295L 2qA3 NA NA chr2 27389355 TGCxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.580216 0.58293 0.995343 48 0 0 36.3734 0.5 0.02 -0.228033 13 13 384 380 60 60 0 0 AA 4.210526 14 0 387 0 KEEP + Wdr5 YES AA_2 chr2 28353929 28353929 C G exonic Gbgt1 stopgain SNV NM_139197:c.C105G:p.Y35X exonic Gbgt1 stopgain SNV uc008iyl.2:c.C105G:p.Y35X exonic ENSMUSG00000026829 stopgain SNV ENSMUST00000028172:c.C105G:p.Y35X 2qA3 NA NA chr2 28353929 CTAxATA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 135 0 0 56.641842 0.465116 0.02 -0.377134 23 20 671 600 60 60 0 0 CC 20.453963 68 0 1927 0 KEEP + Gbgt1 NO AA_2 chr2 29860004 29860004 A T intronic Sptan1 NA NA intronic Spna2 NA NA intronic ENSMUSG00000057738 NA NA 2qB NA NA chr2 29860004 CCTxAGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 89 0 0 45.098013 0.714286 0.02 -0.184156 6 15 165 434 60 60 0 0 AA 16.513705 55 0 1461 0 KEEP + Sptan1 YES AA_2 chr2 30656231 30656231 A T intronic 1700001O22Rik NA NA intronic 1700001O22Rik NA NA intronic ENSMUSG00000044320 NA NA 2qB NA NA chr2 30656231 AACxGCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 92 2 0 28.125865 0.305556 0.02 -0.315736 25 11 732 325 60 60 0 0 AA 14.435301 48 0 1314 0 KEEP - 1700001O22Rik YES AA_2 chr2 31224512 31224512 A T intergenic "Ncs1(dist=73521),Ass1(dist=101278)" NA NA intergenic "Ncs1(dist=73521),Hmcn2(dist=69070)" NA NA exonic ENSMUSG00000055632 nonsynonymous SNV ENSMUST00000113532:c.A2953T:p.N985Y 2qB NA NA chr2 31224512 ACCxACG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 172 2 0 31.13172 0.254902 0.02 1.346254 38 13 1103 375 60 60 0 0 AA 26.447225 88 0 2383 0 KEEP NA Ncs1 YES AA_2 chr2 32415501 32415501 A T intronic Fam102a NA NA intronic Fam102a NA NA intronic ENSMUSG00000039157 NA NA 2qB NA NA chr2 32415501 TGCxTCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 242 3 0 98.879015 0.530303 0.02 1.313386 31 35 873 1020 60 70 0 0 AA 42.975187 143 0 3820 0 KEEP + Fam102a YES AA_2 chr2 32777310 32777310 A C intronic Fam129b NA NA intronic Fam129b NA NA intronic ENSMUSG00000026796 NA NA 2qB NA NA chr2 32777310 TTGxGTT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 94 0 0 13.502441 0.25 0.02 -0.219232 18 6 533 165 60 60 0 0 AA 15.026829 50 0 1371 0 KEEP + Fam129b NO AA_2 chr2 3346557 3346557 A T exonic Dclre1c nonsynonymous SNV NM_001110214:c.A179T:p.Y60F exonic Dclre1c nonsynonymous SNV uc008idy.2:c.A179T:p.Y60F exonic ENSMUSG00000026648 nonsynonymous SNV ENSMUST00000061852:c.A179T:p.Y60F 2qA1 NA NA chr2 3346557 TGTxCTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 89 0 0 24.805939 0.322581 0.02 -0.271839 21 10 583 285 60 60 0 0 AA 11.728235 39 0 1046 0 KEEP + Dclre1c YES AA_2 chr2 34991000 34991000 C T exonic Cep110 nonsynonymous SNV NM_030000:c.C161T:p.A54V exonic Cep110 nonsynonymous SNV uc008jjv.1:c.C161T:p.A54V exonic ENSMUSG00000057110 nonsynonymous SNV ENSMUST00000113033:c.C161T:p.A54V 2qB NA NA chr2 34991000 CAGxAAA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036762 0.036766 0.999892 32 0 0 11.448406 0.666667 0.02 -0.052616 2 4 57 112 60 60 0 0 CC 6.898006 23 0 622 0 KEEP + Cep110 NO AA_2 chr2 35957850 35957850 C A intronic Lhx6 NA NA intronic Lhx6 NA NA intronic ENSMUSG00000026890 NA NA 2qB NA NA chr2 35957850 AGTxAGA C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139743 0.139832 0.999366 31 0 0 19.69786 0.583333 0.02 -0.105241 5 7 149 199 60 60 0 0 CC 5.114103 17 0 487 0 KEEP - Lhx6 NO AA_2 chr2 36852967 36852967 T A exonic Olfr357 synonymous SNV NM_146623:c.T636A:p.A212A exonic Olfr357 synonymous SNV uc008jmg.1:c.T636A:p.A212A exonic ENSMUSG00000055838 synonymous SNV ENSMUST00000069578:c.T636A:p.A212A 2qB NA NA chr2 36852967 GGCxTTC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 DBSNP COVERED 0.996724 0.996724 1 186 0 0 129.978487 0.657143 0.02 1.179708 24 46 701 1276 60 60 0 0 TT 31.282623 104 0 2910 0 KEEP + Olfr357 YES AA_2 chr2 43459837 43459837 A T intronic Kynu NA NA intronic Kynu NA NA intronic ENSMUSG00000026866 NA NA 2qB NA NA chr2 43459837 CTTxCCC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 60 0 0 12.767777 0.277778 0.02 -0.1666 13 5 360 150 60 60 0 0 AA 9.623097 32 0 857 0 KEEP + Kynu YES AA_2 chr2 54785891 54785891 G T exonic Galnt13 nonsynonymous SNV NM_173030:c.G1067T:p.G356V exonic Galnt13 nonsynonymous SNV uc008jrr.1:c.G1067T:p.G356V exonic ENSMUSG00000060988 nonsynonymous SNV ENSMUST00000068595:c.G1067T:p.G356V 2qC1.1 NA NA chr2 54785891 GTGxCAC G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 74 0 0 6.449954 0.12 0.02 -0.228008 22 3 639 90 60 60 0 0 GG 12.030942 40 0 1106 0 KEEP + Galnt13 NO AA_2 chr2 59773345 59773345 T A intronic Baz2b NA NA intronic Baz2b NA NA intronic ENSMUSG00000026987 NA NA 2qC1.1 NA NA chr2 59773345 GCAxGCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 122 0 0 42.798368 0.421053 0.02 -0.333239 22 16 630 464 60 60 0 0 TT 19.849387 66 0 1792 0 KEEP - Baz2b YES AA_2 chr2 68546998 68546998 G C intronic 4932414N04Rik NA NA intronic 4932414N04Rik NA NA intronic ENSMUSG00000048204 NA NA 2qC2 NA NA chr2 68546998 TGTxAGT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 76 0 0 63.302966 0.8 0.02 -0.236807 5 20 151 592 60 60 0 0 GG 10.52904 35 0 1006 0 KEEP + 4932414N04Rik NO AA_2 chr2 69826899 69826899 T G exonic Ubr3 synonymous SNV NM_001081548:c.T3972G:p.T1324T exonic Ubr3 synonymous SNV uc008jza.2:c.T3972G:p.T1324T exonic ENSMUSG00000044308 synonymous SNV ENSMUST00000152610:c.T57G:p.T19T 2qC2 NA NA chr2 69826899 AACxTGT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 105 0 0 22.876161 0.333333 0.02 -0.263067 20 10 585 264 60 60 0 0 TT 16.844688 56 0 1569 0 KEEP + Ubr3 NO AA_2 chr2 70188051 70188051 T A exonic Myo3b synonymous SNV NM_177376:c.T3708A:p.P1236P exonic Myo3b synonymous SNV uc008jzf.2:c.T843A:p.P281P exonic ENSMUSG00000042064 synonymous SNV ENSMUST00000112243:c.T3624A:p.P1208P 2qC2 NA NA chr2 70188051 ACCxGGT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.196303 0.196312 0.999957 41 0 0 10.071286 0.285714 0.02 -0.122785 10 4 292 118 60 60 0 0 TT 7.806826 26 0 688 0 KEEP + Myo3b YES AA_2 chr2 72012878 72012878 T C exonic Rapgef4 nonsynonymous SNV NM_001204166:c.T179C:p.L60P exonic Rapgef4 nonsynonymous SNV uc012bxe.1:c.T179C:p.L60P exonic ENSMUSG00000049044 nonsynonymous SNV ENSMUST00000028525:c.T179C:p.L60P 2qC3 NA NA chr2 72012878 TCCxCAG T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 67 0 0 24.098133 0.375 0.02 -0.210495 15 9 444 267 60 60 0 0 TT 9.023626 30 0 841 0 KEEP + Rapgef4 NO AA_2 chr2 72279631 72279631 A T exonic Zak nonsynonymous SNV NM_023057:c.A2045T:p.Y682F exonic B230120H23Rik nonsynonymous SNV uc008kbv.2:c.A2045T:p.Y682F exonic ENSMUSG00000004085 nonsynonymous SNV ENSMUST00000090824:c.A2045T:p.Y682F 2qC3 NA NA chr2 72279631 ACTxCCG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 34 0 0 12.722638 0.357143 0.02 -0.122766 9 5 250 143 60 60 0 0 AA 5.112015 17 0 452 0 KEEP + Zak YES AA_2 chr2 74506874 74506874 G C exonic Hoxd13 nonsynonymous SNV NM_008275:c.G508C:p.A170P exonic Hoxd13 nonsynonymous SNV uc008kdu.1:c.G508C:p.A170P exonic ENSMUSG00000001819 nonsynonymous SNV ENSMUST00000001872:c.G508C:p.A170P 2qC3 NA NA chr2 74506874 CTGxCGA G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 85 0 0 9.114154 0.166667 0.02 -0.210494 20 4 589 119 60 60 0 0 GG 15.038169 50 0 1374 0 KEEP + Hoxd13 NO AA_2 chr2 76636397 76636397 A T intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76636397 TGTxTGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 51 0 0 9.163419 0.210526 0.02 -0.166607 15 4 412 115 60 60 0 0 AA 9.319012 31 0 806 0 KEEP - Ttn YES AA_2 chr2 77753621 77753621 T C exonic Cwc22 nonsynonymous SNV NM_172667:c.A1327G:p.I443V exonic Cwc22 nonsynonymous SNV uc008kgd.2:c.A1327G:p.I443V exonic ENSMUSG00000027014 nonsynonymous SNV ENSMUST00000111818:c.A1327G:p.I443V 2qC3 NA NA chr2 77753621 GAAxAGT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 92 0 0 6.395906 0.115385 0.02 -0.228 23 3 640 90 60 60 0 0 TT 15.63358 52 0 1388 0 KEEP - Cwc22 NO AA_2 chr2 85032310 85032310 A T intronic Lrrc55 NA NA ncRNA_intronic BC027685 NA NA ncRNA_intronic ENSMUSG00000085135 NA NA 2qD NA NA chr2 85032310 AACxCAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 60 0 0 27.858959 0.47619 0.02 -0.192517 11 10 310 294 60 60 0 0 AA 9.323287 31 0 843 0 KEEP + Lrrc55 YES AA_2 chr2 86990487 86990487 A T exonic Olfr1111 synonymous SNV NM_146593:c.T330A:p.A110A exonic Olfr1111 synonymous SNV uc008kno.2:c.T330A:p.A110A exonic ENSMUSG00000075158 synonymous SNV ENSMUST00000099860:c.T330A:p.A110A 2qD NA NA chr2 86990487 CTCxGCA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139819 0.139832 0.999909 43 0 0 41.019424 1 0.02 -0.105246 0 12 0 353 0 60 0 0 AA 7.218978 24 0 669 0 KEEP - Olfr1111 YES AA_2 chr2 87486059 87486059 A T exonic Olfr1133 nonsynonymous SNV NM_146351:c.T220A:p.Y74N exonic Olfr1133 nonsynonymous SNV uc008koi.1:c.T220A:p.Y74N exonic ENSMUSG00000075155 nonsynonymous SNV ENSMUST00000099855:c.T220A:p.Y74N 2qD NA NA chr2 87486059 AATxGCA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 116 0 0 33.300393 0.342105 0.02 -0.333267 25 13 729 377 60 60 0 0 AA 19.248584 64 0 1751 0 KEEP - Olfr1133 YES AA_2 chr2 88286210 88286210 G C exonic Olfr1182 nonsynonymous SNV NM_001011535:c.C884G:p.A295G exonic Olfr1182 nonsynonymous SNV uc008kpu.2:c.C884G:p.A295G exonic ENSMUSG00000075124 nonsynonymous SNV ENSMUST00000102619:c.C884G:p.A295G 2qD "Score=0.916658;Name=No.75256,chr2:88259039" NA chr2 88286210 ATGxCAG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 94 0 0 20.571272 0.347826 0.02 -0.2014 15 8 429 232 60 60 0 0 GG 17.400016 58 0 1595 0 KEEP - Olfr1182 NO AA_2 chr2 89592650 89592650 T A exonic Olfr1253 nonsynonymous SNV NM_146373:c.A334T:p.I112F exonic Olfr1253 nonsynonymous SNV uc012byu.1:c.A334T:p.I112F exonic ENSMUSG00000075075 nonsynonymous SNV ENSMUST00000099765:c.A334T:p.I112F 2qE1 NA NA chr2 89592650 GAAxGAC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 225 0 0 144.270848 0.676056 0.02 1.269497 23 48 656 1408 60 60 0 0 TT 34.886483 116 0 3151 0 KEEP - Olfr1253 YES AA_2 chr2 91757666 91757666 A T exonic Ambra1 nonsynonymous SNV NM_172669:c.A3589T:p.T1197S exonic Ambra1 nonsynonymous SNV uc008kwu.1:c.A3589T:p.T1197S exonic ENSMUSG00000040506 nonsynonymous SNV ENSMUST00000045699:c.A3229T:p.T1077S 2qE1 NA NA chr2 91757666 GGCxCAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.320996 0.322807 0.994391 33 0 0 39.176646 0.722222 0.02 -0.157835 5 13 144 376 60 60 0 0 AA 3.906248 13 0 341 0 KEEP + Ambra1 YES AA_2 chr2 9519427 9519427 A C intergenic "1700061F12Rik(dist=400316),Gata3(dist=259278)" NA NA ncRNA_exonic AK080422 NA NA ncRNA_exonic ENSMUSG00000079603 NA NA 2qA1 NA NA chr2 9519427 TAGxATT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 105 0 0 14.780705 0.24 0.02 -0.219258 19 6 551 179 60 60 0 0 AA 19.550422 65 0 1798 0 KEEP - 1700061F12Rik NO AA_2 chr3 101083685 101083685 A T intronic Cd2 NA NA intronic Cd2 NA NA intronic ENSMUSG00000027863 NA NA 3qF2.2 NA NA chr3 101083685 TACxGCG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 138 0 0 63.368355 0.442308 0.02 1.436115 29 23 849 679 60 60 0 0 AA 18.347367 61 0 1689 0 KEEP - Cd2 YES AA_2 chr3 102941249 102941249 G T intronic Dennd2c NA NA intronic Dennd2c NA NA intronic ENSMUSG00000007379 NA NA 3qF2.2 NA NA chr3 102941249 CCAxCAC G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 48 1 0 7.173064 0.214286 0.02 -0.122788 11 3 325 89 60 60 0 0 GG 8.720669 29 0 789 0 KEEP + Dennd2c NO AA_2 chr3 105710454 105710454 A T exonic Adora3 nonsynonymous SNV NM_001174169:c.A163T:p.I55F exonic Adora3 nonsynonymous SNV uc008qvg.2:c.A163T:p.I55F exonic ENSMUSG00000000562 nonsynonymous SNV ENSMUST00000000574:c.A601T:p.I201F 3qF2.2 NA NA chr3 105710454 GACxTCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 180 0 0 97.747432 0.479452 0.02 1.153326 38 35 1074 1030 60 60 0 0 AA 23.757425 79 0 2124 0 KEEP + Adora3 YES AA_2 chr3 105710756 105710756 C G exonic Adora3 synonymous SNV NM_001174169:c.C465G:p.L155L exonic Adora3 synonymous SNV uc008qvg.2:c.C465G:p.L155L exonic ENSMUSG00000000562 synonymous SNV ENSMUST00000000574:c.C903G:p.L301L 3qF2.2 NA NA chr3 105710756 TCTxAGG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.582877 0.58293 0.999909 56 0 0 8.962857 0.153846 0.02 -0.228042 22 4 659 119 60 60 0 0 CC 7.220199 24 0 693 0 KEEP + Adora3 NO AA_2 chr3 107134998 107134998 A G exonic Rbm15 nonsynonymous SNV NM_001045807:c.T1001C:p.F334S exonic Rbm15 nonsynonymous SNV uc008qwz.1:c.T1001C:p.F334S exonic ENSMUSG00000048109 nonsynonymous SNV ENSMUST00000061772:c.T1001C:p.F334S 3qF2.3 NA NA chr3 107134998 TAGxACG A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835607 0.835716 0.999869 61 0 0 46.194149 0.472222 0.02 -0.324485 19 17 552 489 60 60 0 0 AA 6.316282 21 0 580 0 KEEP - Rbm15 NO AA_2 chr3 116626268 116626268 A T exonic Palmd synonymous SNV NM_023245:c.T1497A:p.P499P exonic Palmd synonymous SNV uc008rcx.1:c.T1497A:p.P499P exonic ENSMUSG00000033377 synonymous SNV ENSMUST00000040097:c.T1497A:p.P499P 3qG1 NA NA chr3 116626268 GTGxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 137 1 0 84.488123 0.5 0.02 1.134011 32 32 935 885 60 60 0 0 AA 18.344605 61 0 1673 0 KEEP - Palmd YES AA_2 chr3 122481921 122481921 A T exonic Pde5a synonymous SNV NM_153422:c.A1032T:p.I344I exonic Pde5a synonymous SNV uc008ret.2:c.A1032T:p.I344I exonic ENSMUSG00000053965 synonymous SNV ENSMUST00000066728:c.A1032T:p.I344I 3qG1 NA NA chr3 122481921 GATxGCG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 82 0 0 47.601514 0.53125 0.02 -0.280644 15 17 436 491 60 60 0 0 AA 11.128764 37 0 1023 0 KEEP + Pde5a YES AA_2 chr3 124282765 124282765 T C ncRNA_exonic 1700003H04Rik NA NA exonic 1700003H04Rik nonsynonymous SNV uc012cxf.1:c.A98G:p.K33R exonic ENSMUSG00000039174 nonsynonymous SNV ENSMUST00000047110:c.A98G:p.K33R 3qG1 NA NA chr3 124282765 TTCxTCC T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 65 0 0 11.359721 0.192308 0.02 -0.236801 21 5 621 145 60 60 0 0 TT 9.624119 32 0 885 0 KEEP - 1700003H04Rik NO AA_2 chr3 129593340 129593340 A T exonic Pla2g12a nonsynonymous SNV NM_023196:c.A449T:p.Q150L exonic Pla2g12a nonsynonymous SNV uc008rip.2:c.A332T:p.Q111L exonic ENSMUSG00000027999 nonsynonymous SNV ENSMUST00000029629:c.A449T:p.Q150L 3qG3 NA NA chr3 129593340 CTCxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 DBSNP COVERED 0.612402 0.612407 0.999992 83 0 0 21.122903 0.333333 0.02 -0.236646 18 9 530 243 60 60 0 0 AA 12.332373 41 0 1145 0 KEEP + Pla2g12a YES AA_2 chr3 135233380 135233380 A T exonic Manba nonsynonymous SNV NM_027288:c.A2617T:p.T873S exonic Manba nonsynonymous SNV uc008rlv.2:c.A2617T:p.T873S exonic ENSMUSG00000028164 nonsynonymous SNV ENSMUST00000029814:c.A2617T:p.T873S 3qG3 NA NA chr3 135233380 GTCxCCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.351961 0.353947 0.994391 35 0 0 32.040556 0.578947 0.02 -0.166477 8 11 209 324 60 60 0 0 AA 3.908854 13 0 342 0 KEEP + Manba YES AA_2 chr3 137849077 137849077 C G intronic 4930579F01Rik NA NA intronic 4930579F01Rik NA NA intronic ENSMUSG00000012042 NA NA 3qG3 NA NA chr3 137849077 CAGxCAG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 239 2 0 11.099253 0.061856 0.02 0.942838 91 6 2649 180 60 60 0 0 CC 31.867605 106 0 2862 0 KEEP - 4930579F01Rik NO AA_2 chr3 138114321 138114321 A T exonic Adh5 nonsynonymous SNV NM_007410:c.A678T:p.K226N exonic Adh5 nonsynonymous SNV uc008rnk.1:c.A678T:p.K226N exonic ENSMUSG00000028138 nonsynonymous SNV ENSMUST00000005964:c.A678T:p.K226N 3qG3 NA NA chr3 138114321 TAAxGAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 114 1 0 27.860406 0.26087 0.02 -0.412158 34 12 1005 336 60 60 0 0 AA 19.244923 64 0 1773 0 KEEP + Adh5 YES AA_2 chr3 142286676 142286676 A T exonic Gbp2 nonsynonymous SNV NM_010260:c.A19T:p.M7L exonic Gbp2 nonsynonymous SNV uc008roy.1:c.A19T:p.M7L exonic ENSMUSG00000028270 nonsynonymous SNV ENSMUST00000165774:c.A19T:p.M7L 3qH1 NA NA chr3 142286676 CACxTGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 60 0 0 13.62387 0.384615 0.02 -0.114015 8 5 230 150 60 60 0 0 AA 12.029712 40 0 1084 0 KEEP + Gbp2 YES AA_2 chr3 154449740 154449740 A G exonic Tnni3k nonsynonymous SNV NM_177066:c.T2456C:p.M819T exonic Tnni3k nonsynonymous SNV uc008rus.2:c.T2456C:p.M819T exonic ENSMUSG00000040086 nonsynonymous SNV ENSMUST00000064076:c.T2456C:p.M819T 3qH4 NA NA chr3 154449740 TGCxTCG A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 195 2 0 97.397276 0.567164 0.02 1.107841 29 38 813 992 60 60 0 0 AA 28.265288 94 0 2509 0 KEEP - Tnni3k NO AA_2 chr3 25811561 25811561 T A intronic Nlgn1 NA NA intronic Nlgn1 NA NA intronic ENSMUSG00000063887 NA NA 3qA3 NA NA chr3 25811561 TCTxACC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 153 0 0 53.334546 0.381818 0.02 1.311212 34 21 971 592 60 60 0 0 TT 20.931538 73 1 1934 8 KEEP - Nlgn1 YES AA_2 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717307 0.717315 0.999988 64 3 0 24.405236 0.322581 0.02 -0.271872 21 10 617 281 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO AA_2 chr3 35796406 35796406 A C exonic Dcun1d1 nonsynonymous SNV NM_001205361:c.T680G:p.M227R exonic Dcun1d1 nonsynonymous SNV uc008oyw.1:c.T635G:p.M212R exonic ENSMUSG00000027708 nonsynonymous SNV ENSMUST00000108182:c.T680G:p.M227R 3qB NA NA chr3 35796406 GACxTGT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 139 0 0 15.217402 0.142857 0.02 -0.429713 42 7 1191 206 60 60 0 0 AA 21.953132 73 0 1965 0 KEEP - Dcun1d1 NO AA_2 chr3 59642430 59642430 T C intergenic "Gm5538(dist=86111),Gm8298(dist=22543)" NA NA exonic 4930449A18Rik nonsynonymous SNV uc008piw.1:c.T373C:p.Y125H exonic ENSMUSG00000074589 nonsynonymous SNV ENSMUST00000094228:c.T373C:p.Y125H 3qD NA NA chr3 59642430 CTGxATT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 98 0 0 32.183115 0.413793 0.02 -0.254317 17 12 474 350 60 60 0 0 TT 15.938191 53 0 1420 0 KEEP + Gm5538 NO AA_2 chr3 64437326 64437326 C G ncRNA_exonic Vmn2r-ps11 NA NA exonic Vmn2r-ps11 nonsynonymous SNV uc008pkg.2:c.G1779C:p.L593F ncRNA_exonic ENSMUSG00000074581 NA NA 3qE1 "Score=0.981182;Name=No.81601,chr3:64267157" NA chr3 64437326 TGCxAAG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 281 0 36 8.828206 0.068966 0.02 1.030618 81 6 2375 154 60 23 0 0 CC 42.098549 140 0 3965 0 KEEP - Vmn2r-ps11 NO AA_2 chr3 65543759 65543759 A T exonic Lekr1 nonsynonymous SNV NM_001166659:c.A715T:p.R239W exonic Lekr1 nonsynonymous SNV uc012cqf.1:c.A715T:p.R239W exonic ENSMUSG00000074579 nonsynonymous SNV ENSMUST00000161534:c.A715T:p.R239W 3qE1 NA NA chr3 65543759 GCCxGGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043781 0.043787 0.99986 33 2 0 11.531486 0.571429 0.02 -0.061393 3 4 88 117 60 60 0 0 AA 5.71263 19 0 515 0 KEEP + Lekr1 YES AA_2 chr3 69356946 69356946 A T exonic Ppm1l nonsynonymous SNV NM_178726:c.A933T:p.E311D exonic Ppm1l nonsynonymous SNV uc008pmg.1:c.A933T:p.E311D exonic ENSMUSG00000027784 nonsynonymous SNV ENSMUST00000029355:c.A933T:p.E311D 3qE1 NA NA chr3 69356946 TGAxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 83 0 0 44.004659 0.516129 0.02 -0.271879 15 16 448 457 60 60 0 0 AA 12.030856 40 0 1116 0 KEEP + Ppm1l YES AA_2 chr3 72853450 72853450 G T exonic Slitrk3 nonsynonymous SNV NM_198864:c.C1910A:p.P637Q exonic Slitrk3 nonsynonymous SNV uc008pms.1:c.C1910A:p.P637Q exonic ENSMUSG00000048304 nonsynonymous SNV ENSMUST00000059407:c.C1910A:p.P637Q 3qE3 NA NA chr3 72853450 GTTxGTC G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 64 0 0 34.745316 0.419355 0.02 -0.271869 18 13 526 377 60 60 0 0 GG 7.520167 25 0 708 0 KEEP - Slitrk3 NO AA_2 chr3 84488228 84488228 A T exonic Tmem154 synonymous SNV NM_177260:c.A162T:p.T54T exonic Tmem154 synonymous SNV uc008pqi.1:c.A162T:p.T54T exonic ENSMUSG00000056498 synonymous SNV ENSMUST00000107682:c.A162T:p.T54T 3qF1 NA NA chr3 84488228 CACxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 86 0 0 51.47574 0.529412 0.02 -0.298194 16 18 465 531 60 60 0 0 AA 12.632891 42 0 1165 0 KEEP - Tmem154 YES AA_2 chr3 86801366 86801366 T A exonic Cd1d1 synonymous SNV NM_007639:c.A786T:p.T262T exonic "Cd1d1,Cd1d2" synonymous SNV uc012crf.1:c.A393T:p.T131T exonic ENSMUSG00000028076 synonymous SNV ENSMUST00000063869:c.A393T:p.T131T 3qF1 "Score=0.953994;Name=No.81674,chr3:86790217" NA chr3 86801366 CCAxGTC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 285 0 52 90.64831 0.364583 0.02 0.943201 61 35 1718 1013 60 36 0 0 TT 42.100538 140 0 3760 0 KEEP - Cd1d1 YES AA_2 chr3 87917862 87917862 A T exonic Iqgap3 synonymous SNV NM_001033484:c.A3996T:p.T1332T exonic Iqgap3 synonymous SNV uc008pty.1:c.A3996T:p.T1332T exonic ENSMUSG00000028068 synonymous SNV ENSMUST00000167482:c.A1302T:p.T434T 3qF1 NA NA chr3 87917862 CACxGAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 106 0 0 70.82698 0.648649 0.02 -0.324499 13 24 381 698 60 60 0 0 AA 17.441326 58 0 1577 0 KEEP + Iqgap3 YES AA_2 chr3 92392783 92392783 T G exonic Smcp unknown UNKNOWN exonic Smcp unknown UNKNOWN UTR5 ENSMUSG00000074435 NA NA 3qF1 NA NA chr3 92392783 CTCxTCT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 49 0 0 10.602028 0.25 0.02 -0.175389 15 5 444 131 60 60 0 0 TT 6.91863 23 0 649 0 KEEP - Smcp NO AA_2 chr3 93456549 93456549 T A exonic Tdpoz2 nonsynonymous SNV NM_001007222:c.A37T:p.T13S exonic Tdpoz2 nonsynonymous SNV uc008qfl.1:c.A37T:p.T13S ncRNA_exonic ENSMUSG00000057901 NA NA 3qF2.1 "Score=0.948976;Name=No.81787,chr3:93564886" NA chr3 93456549 GTGxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 454 3 15 76.876527 0.287037 0.02 2.63998 77 31 2168 902 60 60 0 0 TT 84.800395 282 0 7574 0 KEEP - Tdpoz2 YES AA_2 chr3 95541001 95541001 T A intronic Ecm1 NA NA intronic Ecm1 NA NA intronic ENSMUSG00000028108 NA NA 3qF2.1 NA NA chr3 95541001 GGGxAAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 134 0 0 70.319178 0.457627 0.02 1.270106 32 27 881 752 60 60 0 0 TT 17.660474 59 0 1482 0 KEEP - Ecm1 YES AA_2 chr3 95584401 95584401 T A exonic Rprd2 nonsynonymous SNV NM_001081293:c.A861T:p.E287D exonic Rprd2 nonsynonymous SNV uc008qkz.1:c.A729T:p.E243D exonic ENSMUSG00000028106 nonsynonymous SNV ENSMUST00000098855:c.A729T:p.E243D 3qF2.1 NA NA chr3 95584401 TGCxTCT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 162 0 0 85.6554 0.525424 0.02 1.169022 28 31 818 886 60 60 0 0 TT 24.965641 83 0 2317 0 KEEP - Rprd2 YES AA_2 chr3 95989346 95989346 A C exonic Sv2a nonsynonymous SNV NM_022030:c.A438C:p.E146D exonic Sv2a nonsynonymous SNV uc008qmf.1:c.A438C:p.E146D exonic ENSMUSG00000038486 nonsynonymous SNV ENSMUST00000035371:c.A438C:p.E146D 3qF2.1 NA NA chr3 95989346 GGAxGAA A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 92 0 0 10.898883 0.133333 0.02 -0.394617 39 6 1124 157 60 60 0 0 AA 12.329285 41 0 1115 0 KEEP + Sv2a NO AA_2 chr3 96512341 96512341 C G exonic Nudt17 synonymous SNV NM_001162925:c.G102C:p.G34G exonic Nudt17 synonymous SNV uc008qnx.2:c.G102C:p.G34G exonic ENSMUSG00000028100 synonymous SNV ENSMUST00000029742:c.G102C:p.G34G 3qF2.1 NA NA chr3 96512341 CGGxCCG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.420544 0.423478 0.993072 40 0 0 8.569765 0.190476 0.02 -0.184172 17 4 502 111 60 60 0 0 CC 3.308038 11 0 299 0 KEEP - Nudt17 NO AA_2 chr4 107694389 107694389 G A exonic Podn synonymous SNV NM_172874:c.C885T:p.D295D exonic Podn synonymous SNV uc012did.1:c.C249T:p.D83D exonic ENSMUSG00000028600 synonymous SNV ENSMUST00000146851:c.C450T:p.D150D 4qC7 NA NA chr4 107694389 CAAxTCC G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612323 0.612407 0.999863 55 2 0 28.621435 0.407407 0.02 -0.236783 16 11 460 313 60 60 0 0 GG 5.982132 20 0 508 0 KEEP - Podn NO AA_2 chr4 11280601 11280601 G A exonic Esrp1 nonsynonymous SNV NM_194055:c.C1661T:p.P554L exonic Esrp1 nonsynonymous SNV uc008rzk.2:c.C1169T:p.P390L exonic ENSMUSG00000040728 nonsynonymous SNV ENSMUST00000147342:c.C1154T:p.P385L 4qA1 NA NA chr4 11280601 GGAxGAG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.195062 0.196312 0.993634 29 0 0 13.12278 0.357143 0.02 -0.122783 9 5 260 147 60 60 0 0 GG 3.609673 12 0 338 0 KEEP - Esrp1 NO AA_2 chr4 11458195 11458195 A T intronic 1110037F02Rik NA NA intronic 1110037F02Rik NA NA intronic ENSMUSG00000040720 NA NA 4qA1 NA NA chr4 11458195 GGTxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.229145 0.229173 0.999879 38 0 0 22.414217 0.533333 0.02 -0.131553 7 8 205 231 60 60 0 0 AA 6.617422 22 0 614 0 KEEP + 1110037F02Rik YES AA_2 chr4 114782655 114782655 A T exonic Cyp4x1 nonsynonymous SNV NM_001003947:c.T1328A:p.L443Q exonic Cyp4x1 nonsynonymous SNV uc008uep.1:c.T1328A:p.L443Q exonic ENSMUSG00000047155 nonsynonymous SNV ENSMUST00000051400:c.T1328A:p.L443Q 4qD1 NA NA chr4 114782655 GGTxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 75 0 0 10.893452 0.151515 0.02 -0.289378 28 5 805 146 60 60 0 0 AA 9.020719 30 0 809 0 KEEP - Cyp4x1 YES AA_2 chr4 115193777 115193777 G A exonic Cyp4a10 nonsynonymous SNV NM_010011:c.G484A:p.A162T exonic "Cyp4a10,Cyp4a31" nonsynonymous SNV uc008uex.2:c.G439A:p.A147T exonic ENSMUSG00000066072 nonsynonymous SNV ENSMUST00000058785:c.G484A:p.A162T 4qD1 "Score=0.926879;Name=No.86353,chr4:115226056" NA chr4 115193777 ATGxCCG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 482 4 0 207.474241 0.616667 0.02 2.534822 46 74 1346 2069 60 60 0 0 GG 87.974245 293 0 8029 0 KEEP + Cyp4a10 NO AA_2 chr4 115282302 115282302 T A exonic Cyp4a32 nonsynonymous SNV NM_001100181:c.T578A:p.L193Q exonic Cyp4a32 nonsynonymous SNV uc008ufa.1:c.T578A:p.L193Q exonic ENSMUSG00000063929 nonsynonymous SNV ENSMUST00000084342:c.T578A:p.L193Q 4qD1 "Score=0.921206;Name=No.86355,chr4:115222982" NA chr4 115282302 CCCxAGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 276 2 0 152.050314 0.641975 0.02 1.083162 29 52 837 1502 60 60 0 0 TT 48.643985 162 0 4335 0 KEEP + Cyp4a32 YES AA_2 chr4 115308537 115308537 C G exonic Cyp4b1 nonsynonymous SNV NM_007823:c.G714C:p.W238C exonic Cyp4b1 nonsynonymous SNV uc008ufc.1:c.G714C:p.W238C exonic ENSMUSG00000028713 nonsynonymous SNV ENSMUST00000030482:c.G648C:p.W216C 4qD1 NA NA chr4 115308537 GAGxCAG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322793 0.322807 0.999957 51 0 0 39.279457 0.722222 0.02 -0.157862 5 13 147 377 60 60 0 0 CC 7.820309 26 0 723 0 KEEP - Cyp4b1 NO AA_2 chr4 118057146 118057146 G A exonic Szt2 nonsynonymous SNV NM_198170:c.C4952T:p.P1651L exonic Szt2 nonsynonymous SNV uc012djw.1:c.C4952T:p.P1651L exonic ENSMUSG00000033253 nonsynonymous SNV ENSMUST00000075406:c.C4952T:p.P1651L 4qD2.1 NA NA chr4 118057146 CCCxGGG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 77 0 0 49.751495 0.5 0.02 -0.315646 18 18 485 520 60 60 0 0 GG 9.856461 33 0 832 0 KEEP - Szt2 NO AA_2 chr4 118057147 118057147 G A exonic Szt2 nonsynonymous SNV NM_198170:c.C4951T:p.P1651S exonic Szt2 nonsynonymous SNV uc012djw.1:c.C4951T:p.P1651S exonic ENSMUSG00000033253 nonsynonymous SNV ENSMUST00000075406:c.C4951T:p.P1651S 4qD2.1 NA NA chr4 118057147 CCGxGGA G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 78 0 0 50.047531 0.5 0.02 -0.315734 18 18 531 523 60 60 0 0 GG 9.914067 33 0 904 0 KEEP - Szt2 NO AA_2 chr4 118589508 118589508 A T exonic Olfr1329 nonsynonymous SNV NM_001011870:c.T563A:p.L188Q exonic Olfr1329 nonsynonymous SNV uc008ula.1:c.T563A:p.L188Q exonic ENSMUSG00000073767 nonsynonymous SNV ENSMUST00000071979:c.T563A:p.L188Q 4qD2.1 "Score=0.932485;Name=No.86363,chr4:118454252" NA chr4 118589508 GCCxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 199 8 0 15.516838 0.315789 0.02 1.232222 13 6 381 178 60 60 0 0 AA 35.181757 117 0 3229 0 KEEP - Olfr1329 YES AA_2 chr4 119769416 119769416 A T exonic Hivep3 nonsynonymous SNV NM_010657:c.A2323T:p.T775S exonic Hivep3 nonsynonymous SNV uc008una.1:c.A2323T:p.T775S exonic ENSMUSG00000028634 nonsynonymous SNV ENSMUST00000106307:c.A2323T:p.T775S 4qD2.1 NA NA chr4 119769416 AGAxCAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 51 0 0 14.507046 0.285714 0.02 -0.184162 15 6 426 171 60 60 0 0 AA 6.916335 23 0 623 0 KEEP + Hivep3 YES AA_2 chr4 128788075 128788075 T A exonic Tmem54 nonsynonymous SNV NM_133881:c.T418A:p.W140R exonic Tmem54 nonsynonymous SNV uc008uwa.2:c.T418A:p.W140R exonic ENSMUSG00000028786 nonsynonymous SNV ENSMUST00000030575:c.T418A:p.W140R 4qD2.2 NA NA chr4 128788075 CTCxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 320 1 0 101.17976 0.372549 0.02 2.872256 64 38 1858 1123 70 60 0 0 TT 51.40043 171 0 4648 0 KEEP + Tmem54 YES AA_2 chr4 133563937 133563937 G C exonic Lin28a nonsynonymous SNV NM_145833:c.C302G:p.A101G exonic Lin28a nonsynonymous SNV uc008vdw.1:c.C302G:p.A101G exonic ENSMUSG00000050966 nonsynonymous SNV ENSMUST00000051674:c.C302G:p.A101G 4qD3 NA NA chr4 133563937 TTGxCAG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 101 0 0 39.176172 0.466667 0.02 -0.271885 16 14 468 415 60 60 0 0 GG 16.543205 55 0 1529 0 KEEP - Lin28a NO AA_2 chr4 133636262 133636262 A T exonic Aim1l nonsynonymous SNV NM_001162970:c.A2921T:p.Y974F exonic Aim1l nonsynonymous SNV uc008vdx.2:c.A2921T:p.Y974F exonic ENSMUSG00000012123 nonsynonymous SNV ENSMUST00000149956:c.A71T:p.Y24F 4qD3 NA NA chr4 133636262 TCTxCCC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 129 0 0 73.005806 0.714286 0.02 -0.306698 10 25 263 702 60 60 0 0 AA 21.621611 72 0 1814 0 KEEP + Aim1l YES AA_2 chr4 134486947 134486947 G C intronic Syf2 NA NA intronic Syf2 NA NA intronic ENSMUSG00000028821 NA NA 4qD3 NA NA chr4 134486947 CCGxCTT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 88 0 0 10.670649 0.185185 0.02 -0.245547 22 5 649 139 60 60 0 0 GG 14.12169 47 0 1250 0 KEEP + Syf2 NO AA_2 chr4 135035519 135035519 C G exonic Nipal3 nonsynonymous SNV NM_028995:c.G278C:p.G93A exonic Nipal3 nonsynonymous SNV uc008vgn.1:c.G278C:p.G93A exonic ENSMUSG00000028803 nonsynonymous SNV ENSMUST00000063906:c.G278C:p.G93A 4qD3 NA NA chr4 135035519 ACGxCCA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 61 0 0 40.380857 0.722222 0.02 -0.157872 5 13 147 388 60 60 0 0 CC 10.185342 34 0 899 0 KEEP - Nipal3 NO AA_2 chr4 138436229 138436229 T A intronic Pla2g2e NA NA intronic Pla2g2e NA NA intronic ENSMUSG00000028751 NA NA 4qD3 NA NA chr4 138436229 ATGxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 170 0 0 104.304054 0.625 0.02 1.392323 21 35 593 1037 60 60 0 0 TT 28.261991 94 0 2501 0 KEEP + Pla2g2e YES AA_2 chr4 140167258 140167258 T A exonic Arhgef10l nonsynonymous SNV NM_001112722:c.A107T:p.E36V exonic Arhgef10l nonsynonymous SNV uc008vmw.2:c.A107T:p.E36V exonic ENSMUSG00000040964 nonsynonymous SNV ENSMUST00000154979:c.A107T:p.E36V 4qD3 NA NA chr4 140167258 AACxCAA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 76 0 0 18.742856 0.380952 0.02 -0.183976 13 8 382 210 60 60 0 0 TT 11.129464 37 0 1039 0 KEEP - Arhgef10l YES AA_2 chr4 140602385 140602385 T A exonic Crocc synonymous SNV NM_001145958:c.A285T:p.I95I exonic Crocc synonymous SNV uc012dnz.1:c.A285T:p.I95I exonic ENSMUSG00000040860 synonymous SNV ENSMUST00000040222:c.A285T:p.I95I 4qD3 NA NA chr4 140602385 GCGxATG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 318 2 0 147.003733 0.429687 0.02 2.465944 73 55 2011 1587 60 60 0 0 TT 45.076736 150 0 3945 0 KEEP - Crocc YES AA_2 chr4 141184338 141184338 C G exonic Plekhm2 nonsynonymous SNV NM_001033150:c.G2525C:p.G842A exonic Plekhm2 nonsynonymous SNV uc008voz.1:c.G2030C:p.G677A exonic ENSMUSG00000028917 nonsynonymous SNV ENSMUST00000030751:c.G2465C:p.G822A 4qE1 NA NA chr4 141184338 CAGxCAC C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 125 0 0 31.661256 0.240741 0.02 1.311158 41 13 1208 384 60 60 0 0 CC 15.320968 51 0 1375 0 KEEP - Plekhm2 NO AA_2 chr4 143951530 143951530 T A UTR5 Gm13119 NA NA UTR5 Gm13119 NA NA UTR5 ENSMUSG00000070619 NA NA 4qE1 "Score=0.955248;Name=No.86443,chr4:143551900" NA chr4 143951530 AGAxGCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 115 0 4 43.952231 0.457143 0.02 -0.306945 19 16 539 468 60 60 0 0 TT 19.54748 65 0 1750 0 KEEP + Gm13119 YES AA_2 chr4 143982967 143982967 T A exonic Pramef12 nonsynonymous SNV NM_029948:c.A932T:p.E311V exonic Pramef12 nonsynonymous SNV uc008vrd.1:c.A932T:p.E311V exonic ENSMUSG00000028591 nonsynonymous SNV ENSMUST00000030326:c.A932T:p.E311V 4qE1 NA NA chr4 143982967 GATxCTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 0.999999 71 0 0 13.344044 0.206897 0.02 -0.25433 23 6 672 169 60 60 0 0 TT 10.828186 36 0 1000 0 KEEP - Pramef12 YES AA_2 chr4 144655893 144655893 T A intronic Vps13d NA NA intronic Vps13d NA NA intronic ENSMUSG00000020220 NA NA 4qE1 NA NA chr4 144655893 ATGxACA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 48 0 0 12.021413 0.357143 0.02 -0.122747 9 5 251 136 60 60 0 0 TT 9.321471 31 0 822 0 KEEP - Vps13d YES AA_2 chr4 145212290 145212290 T A exonic Gm13212 synonymous SNV NM_001205101:c.T393A:p.S131S intronic Gm13051 NA NA exonic ENSMUSG00000078502 synonymous SNV ENSMUST00000097794:c.T393A:p.S131S 4qE1 "Score=0.972381;Name=No.86543,chr4:146610934" NA chr4 145212290 CTCxGTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 981 40 228 12.826576 0.061404 0.02 2.587245 107 7 3123 209 57 43 0 0 TT 193.699333 644 0 17810 0 KEEP + Gm13212 YES AA_2 chr4 145489259 145489259 G C intergenic "Gm13238(dist=61364),1700095A21Rik(dist=161907)" NA NA exonic Gm13051 nonsynonymous SNV uc008vsa.1:c.G585C:p.Q195H exonic ENSMUSG00000078500 nonsynonymous SNV ENSMUST00000123460:c.G585C:p.Q195H 4qE1 "Score=0.986863;Name=No.86634,chr4:146677141" NA chr4 145489259 CCAxAGA G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999997 129 2 53 11.439929 0.16129 0.02 -0.271893 26 5 773 150 60 36 0 0 GG 17.147532 57 0 1638 0 KEEP + Gm13238 NO AA_2 chr4 147454687 147454687 T A exonic Agtrap nonsynonymous SNV NM_009642:c.A391T:p.S131C exonic Agtrap nonsynonymous SNV uc008vtz.1:c.A391T:p.S131C exonic ENSMUSG00000029007 nonsynonymous SNV ENSMUST00000030865:c.A391T:p.S131C 4qE2 NA NA chr4 147454687 CACxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 63 2 0 35.702796 0.464286 0.02 -0.245562 15 13 433 379 60 60 0 0 TT 9.001018 30 0 786 0 KEEP - Agtrap YES AA_2 chr4 151383470 151383470 A G exonic Klhl21 nonsynonymous SNV NM_001033352:c.A419G:p.D140G exonic Klhl21 nonsynonymous SNV uc008vyy.1:c.A419G:p.D140G exonic ENSMUSG00000073700 nonsynonymous SNV ENSMUST00000097773:c.A419G:p.D140G 4qE2 NA NA chr4 151383470 TGGxCAT A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693638 0.693668 0.999957 61 0 0 16.963319 0.233333 0.02 -0.263104 23 7 663 207 60 60 0 0 AA 7.518219 25 0 676 0 KEEP + Klhl21 NO AA_2 chr4 155030863 155030863 G C exonic Mib2 nonsynonymous SNV NM_145124:c.C1625G:p.A542G exonic Mib2 nonsynonymous SNV uc012dqt.1:c.C1700G:p.A567G exonic ENSMUSG00000029060 nonsynonymous SNV ENSMUST00000077624:c.C1781G:p.A594G 4qE2 NA NA chr4 155030863 CTGxCAC G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 95 0 0 54.673538 0.454545 0.02 -0.385886 24 20 695 583 60 60 0 0 GG 12.887772 43 0 1171 0 KEEP - Mib2 NO AA_2 chr4 155593117 155593117 C G exonic 2310042D19Rik nonsynonymous SNV NM_172417:c.C2008G:p.P670A exonic 2310042D19Rik nonsynonymous SNV uc008wgm.1:c.C2008G:p.P670A exonic ENSMUSG00000078486 nonsynonymous SNV ENSMUST00000105572:c.C2008G:p.P670A 4qE2 NA NA chr4 155593117 GTGxCTA C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 54 0 0 17.54891 0.291667 0.02 -0.210475 17 7 488 205 60 60 0 0 CC 8.121038 27 0 750 0 KEEP + 2310042D19Rik NO AA_2 chr4 19455269 19455269 G A intronic Cpne3 NA NA intronic Cpne3 NA NA intronic ENSMUSG00000028228 NA NA 4qA3 NA NA chr4 19455269 AAGxAGA G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 77 0 0 63.454462 0.7 0.02 -0.263116 9 21 269 614 60 60 0 0 GG 12.026943 40 0 1123 0 KEEP - Cpne3 NO AA_2 chr4 32810454 32810454 A T splicing Mdn1(NM_001081392:exon49:c.7416-2A>T) NA NA splicing "Mdn1(uc008sfa.1:exon49:c.7416-2A>T,uc008sfb.1:exon2:c.30-2A>T)" NA NA splicing ENSMUSG00000058006(ENSMUST00000071642:exon49:c.7416-2A>T) NA NA 4qA5 NA NA chr4 32810454 TCCxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 93 0 0 64.975796 0.75 0.02 -0.245573 7 21 204 618 60 60 0 0 AA 14.737523 49 0 1346 0 KEEP + Mdn1 YES AA_2 chr4 43673268 43673268 A C exonic Fam221b nonsynonymous SNV NM_175517:c.T1192G:p.F398V exonic 4930412F15Rik nonsynonymous SNV uc008sqt.1:c.T1192G:p.F398V exonic ENSMUSG00000043633 nonsynonymous SNV ENSMUST00000056474:c.T1192G:p.F398V 4qB1 NA NA chr4 43673268 AGAxCTC A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.99986 49 0 0 9.280214 0.181818 0.02 -0.192927 18 4 504 119 60 60 0 0 AA 5.704871 19 0 494 0 KEEP - Fam221b NO AA_2 chr4 43694032 43694032 A T UTR5 Tmem8b NA NA UTR5 Tmem8b NA NA exonic ENSMUSG00000078716 synonymous SNV ENSMUST00000107866:c.A1062T:p.L354L 4qB1 NA NA chr4 43694032 CCTxCAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 200 0 0 149.443258 0.621951 0.02 1.074842 31 51 836 1487 60 60 0 0 AA 29.454443 98 0 2563 0 KEEP + Tmem8b YES AA_2 chr4 45731538 45731538 C T exonic Gm829 nonsynonymous SNV NM_001033412:c.C199T:p.R67W exonic Gm829 nonsynonymous SNV uc008ssw.1:c.C199T:p.R67W ncRNA_exonic ENSMUSG00000073860 NA NA 4qB1 NA NA chr4 45731538 TGGxGGT C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 100 0 0 58.299937 0.525 0.02 -0.350714 19 21 506 603 60 60 0 0 CC 12.916019 43 0 1035 0 KEEP + Gm829 NO AA_2 chr4 57037237 57037237 A T intergenic "Frrs1l(dist=33974),Epb4.1l4b(dist=37361)" NA NA intergenic "6430704M03Rik(dist=33974),Epb4.1l4b(dist=37361)" NA NA exonic ENSMUSG00000028434 nonsynonymous SNV ENSMUST00000044022:c.T140A:p.V47E 4qB3 NA NA chr4 57037237 CTCxCAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 72 0 0 26.741817 0.37037 0.02 -0.2368 17 10 493 297 70 60 0 0 AA 9.017201 30 0 797 0 KEEP NA Frrs1l YES AA_2 chr4 57075993 57075993 A C exonic Epb4.1l4b nonsynonymous SNV NM_019427:c.T1568G:p.L523R exonic Epb4.1l4b nonsynonymous SNV uc008sxy.2:c.T1658G:p.L553R exonic ENSMUSG00000028434 nonsynonymous SNV ENSMUST00000030142:c.T1568G:p.L523R 4qB3 "Score=0.921699;Name=No.67106,chr17:54142479" NA chr4 57075993 ATGxGTT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 89 0 0 18.503248 0.25 0.02 -0.280645 24 8 710 225 60 60 0 0 AA 13.233134 44 0 1220 0 KEEP - Epb4.1l4b NO AA_2 chr4 57091747 57091747 C G exonic Epb4.1l4b nonsynonymous SNV NM_019427:c.G752C:p.R251T exonic Epb4.1l4b nonsynonymous SNV uc008sxy.2:c.G842C:p.R281T exonic ENSMUSG00000028434 nonsynonymous SNV ENSMUST00000030142:c.G752C:p.R251T 4qB3 NA NA chr4 57091747 TACxTGT C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322772 0.322807 0.999892 42 0 0 17.538971 0.444444 0.02 -0.15779 10 8 295 191 60 60 0 0 CC 6.918294 23 0 643 0 KEEP - Epb4.1l4b NO AA_2 chr4 57997020 57997020 A T UTR3 Txndc8 NA NA UTR3 Txndc8 NA NA UTR3 ENSMUSG00000038709 NA NA 4qB3 NA NA chr4 57997020 CACxGGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162447 0.162467 0.999879 46 0 0 27.6072 0.692308 0.02 -0.11402 4 9 118 268 60 60 0 0 AA 6.616898 22 0 605 0 KEEP - Txndc8 YES AA_2 chr4 60450472 60450472 T A intergenic "Mup9(dist=15648),Mup1(dist=60413)" NA NA intronic "LOC100048884,Mup10" NA NA ncRNA_intronic ENSMUSG00000078685 NA NA 4qB3 "Score=0.98679;Name=No.86127,chr4:61381089" NA chr4 60450472 AGCxACG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 195 0 0 50.244586 0.31746 0.02 1.142722 43 20 1233 578 60 60 0 0 TT 36.088659 120 0 3260 0 KEEP - Mup9 YES AA_2 chr4 68423876 68423876 G A exonic Brinp1 stopgain SNV NM_019967:c.C1450T:p.Q484X exonic Dbc1 stopgain SNV uc008thw.1:c.C1450T:p.Q484X exonic ENSMUSG00000028351 stopgain SNV ENSMUST00000030036:c.C1450T:p.Q484X 4qC1 NA NA chr4 68423876 CCTxGAA G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 125 0 0 32.621022 0.333333 0.02 -0.342046 26 13 774 372 60 60 0 0 GG 21.954325 73 0 2067 0 KEEP - Brinp1 NO AA_2 chr4 73719917 73719917 C A intronic Frmd3 NA NA intronic Frmd3 NA NA intronic ENSMUSG00000049122 NA NA 4qC3 NA NA chr4 73719917 GTCxTAG C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 81 0 0 8.737159 0.16 0.02 -0.219259 21 4 616 116 60 60 0 0 CC 13.235541 44 0 1242 0 KEEP + Frmd3 NO AA_2 chr4 81004638 81004638 T A exonic Mpdz synonymous SNV NM_010820:c.A2352T:p.P784P exonic Mpdz synonymous SNV uc008tjw.2:c.A2352T:p.P784P exonic ENSMUSG00000028402 synonymous SNV ENSMUST00000168999:c.A2352T:p.P784P 4qC3 NA NA chr4 81004638 TTCxGGT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 29 0 0 13.523761 0.384615 0.02 -0.114016 8 5 233 149 60 60 0 0 TT 3.894576 13 0 342 0 KEEP - Mpdz YES AA_2 chr4 8759645 8759645 G T exonic Chd7 synonymous SNV NM_001277149:c.G3372T:p.G1124G exonic Chd7 synonymous SNV uc008rya.1:c.G3372T:p.G1124G exonic ENSMUSG00000041235 synonymous SNV ENSMUST00000039267:c.G3372T:p.G1124G 4qA1 NA NA chr4 8759645 CGGxACC G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 98 0 0 9.568057 0.15625 0.02 -0.28063 27 5 793 132 60 60 0 0 GG 15.317985 51 0 1395 0 KEEP + Chd7 NO AA_2 chr4 8774428 8774428 A T intronic Chd7 NA NA intronic Chd7 NA NA intronic ENSMUSG00000041235 NA NA 4qA1 NA NA chr4 8774428 GGTxGGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 62 0 0 43.146736 0.6 0.02 -0.21924 10 15 284 433 60 60 0 0 AA 9.923455 33 0 905 0 KEEP + Chd7 YES AA_2 chr4 94518441 94518441 T A exonic Tek nonsynonymous SNV NM_013690:c.T2234A:p.M745K exonic Tek nonsynonymous SNV uc012dhc.1:c.T2081A:p.M694K exonic ENSMUSG00000006386 nonsynonymous SNV ENSMUST00000073939:c.T2081A:p.M694K 4qC5 NA NA chr4 94518441 AGAxGCT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 65 0 0 11.369294 0.185185 0.02 -0.236776 22 5 620 146 60 60 0 0 TT 9.622762 32 0 856 0 KEEP + Tek YES AA_2 chr4 95961506 95961506 T A exonic Cyp2j11 stoploss SNV NM_001004141:c.A1515T:p.X505C exonic Cyp2j11-ps stoploss SNV uc008tth.2:c.A1515T:p.X505C exonic ENSMUSG00000066097 stoploss SNV ENSMUST00000015368:c.A1515T:p.X505C 4qC5 NA NA chr4 95961506 GCAxCAC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 116 0 0 33.67936 0.382353 0.02 -0.298171 21 13 597 373 60 60 0 0 TT 20.149479 67 0 1816 0 KEEP - Cyp2j11 YES AA_2 chr5 100888621 100888621 T A exonic Lin54 synonymous SNV NM_001115010:c.A1152T:p.T384T exonic Lin54 synonymous SNV uc008yhn.2:c.A1152T:p.T384T exonic ENSMUSG00000035310 synonymous SNV ENSMUST00000152387:c.A885T:p.T295T 5qE4 NA NA chr5 100888621 CTGxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 49 0 0 19.042743 0.347826 0.02 -0.20129 15 8 428 217 60 60 0 0 TT 6.307747 21 0 548 0 KEEP - Lin54 YES AA_2 chr5 101193995 101193995 T A exonic Helq stopgain SNV NM_001081107:c.A3037T:p.R1013X exonic Helq stopgain SNV uc012dzs.1:c.A2749T:p.R917X exonic ENSMUSG00000035266 stopgain SNV ENSMUST00000163540:c.A2749T:p.R917X 5qE4 NA NA chr5 101193995 GTCxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 83 0 0 29.621695 0.407407 0.02 -0.236804 16 11 471 323 60 60 0 0 TT 12.331611 41 0 1129 0 KEEP - Helq YES AA_2 chr5 110696201 110696201 T A exonic Pgam5 nonsynonymous SNV NM_001163538:c.A272T:p.Y91F exonic Pgam5 nonsynonymous SNV uc008yqh.2:c.A272T:p.Y91F exonic ENSMUSG00000029500 nonsynonymous SNV ENSMUST00000059229:c.A272T:p.Y91F 5qF NA NA chr5 110696201 TTAxAGT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 155 0 0 113.853767 0.56338 0.02 1.170894 31 40 858 1159 60 60 0 0 TT 18.3397 61 0 1599 0 KEEP - Pgam5 YES AA_2 chr5 110752671 110752671 G C exonic Pole nonsynonymous SNV NM_011132:c.G4261C:p.D1421H exonic Pole nonsynonymous SNV uc008yqm.2:c.G4261C:p.D1421H exonic ENSMUSG00000007080 nonsynonymous SNV ENSMUST00000007296:c.G4261C:p.D1421H 5qF NA NA chr5 110752671 CCAxACA G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 184 0 0 14.404918 0.104478 0.02 1.295767 60 7 1792 208 60 60 0 0 GG 25.855164 86 0 2445 0 KEEP + Pole NO AA_2 chr5 110806319 110806319 T A intronic Fbrsl1 NA NA intronic Fbrsl1 NA NA intronic ENSMUSG00000043323 NA NA 5qF NA NA chr5 110806319 GTCxGTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 118 0 0 53.650805 0.408163 0.02 -0.429756 29 20 858 585 60 60 0 0 TT 16.522981 55 0 1498 0 KEEP - Fbrsl1 YES AA_2 chr5 111184781 111184781 T A exonic Ep400 stopgain SNV NM_029337:c.A970T:p.R324X exonic Ep400 stopgain SNV uc008yrg.1:c.A970T:p.R324X exonic ENSMUSG00000029505 stopgain SNV ENSMUST00000041558:c.A970T:p.R324X 5qF NA NA chr5 111184781 TTCxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 86 0 0 85.708956 0.644444 0.02 -0.394659 16 29 471 846 60 60 0 0 TT 9.324776 31 0 870 0 KEEP - Ep400 YES AA_2 chr5 11137392 11137392 A C intergenic "Gm6455(dist=266584),Speer1-ps1(dist=203016)" NA NA intergenic "AK016172(dist=10937),EG545728(dist=45680)" NA NA intergenic "ENSMUSG00000091602(dist=4905),ENSMUSG00000091920(dist=45680)" NA NA 5qA1 "Score=0.983644;Name=No.90192,chr5:10980685" NA chr5 11137392 TGCxCAG A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 101 1 2 8.718542 0.121212 0.02 -0.289395 29 4 817 121 60 60 0 0 AA 16.839619 56 0 1508 0 KEEP NA Gm6455 NO AA_2 chr5 113219042 113219042 G A exonic Myo18b stopgain SNV NM_028901:c.C5236T:p.Q1746X exonic Myo18b stopgain SNV uc008ytr.2:c.C5236T:p.Q1746X exonic ENSMUSG00000072720 stopgain SNV ENSMUST00000086617:c.C5236T:p.Q1746X 5qF NA NA chr5 113219042 GCTxGCT G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760834 0.760887 0.999931 60 0 0 32.390423 0.393939 0.02 -0.289412 20 13 602 358 60 60 0 0 GG 7.520883 25 0 719 0 KEEP - Myo18b NO AA_2 chr5 113697671 113697671 C A intronic Sgsm1 NA NA intronic Sgsm1 NA NA intronic ENSMUSG00000042216 NA NA 5qF NA NA chr5 113697671 GTTxTCA C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 107 0 0 7.462085 0.105263 0.02 -0.333131 34 4 999 111 60 60 0 0 CC 15.944057 53 0 1519 0 KEEP - Sgsm1 NO AA_2 chr5 122894009 122894009 A T UTR3 Anapc7 NA NA UTR3 Anapc7 NA NA UTR3 ENSMUSG00000029466 NA NA 5qF NA NA chr5 122894009 CACxGTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.522089 0.522161 0.999863 50 0 0 39.896362 0.583333 0.02 -0.210483 10 14 294 403 60 60 0 0 AA 6.015794 20 0 558 0 KEEP + Anapc7 YES AA_2 chr5 129633909 129633909 A T intronic Gpr133 NA NA intronic Gpr133 NA NA intronic ENSMUSG00000044017 NA NA 5qG1.3 NA NA chr5 129633909 CCTxGGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.42039 0.423478 0.992708 33 2 6 12.213584 0.294118 0.02 -0.182794 12 5 335 143 60 60 0 0 AA 3.906784 13 0 339 0 KEEP + Gpr133 YES AA_2 chr5 137925368 137925368 T G exonic Epo nonsynonymous SNV NM_007942:c.A264C:p.E88D exonic Epo nonsynonymous SNV uc009acm.1:c.A264C:p.E88D exonic ENSMUSG00000029711 nonsynonymous SNV ENSMUST00000031723:c.A264C:p.E88D 5qG2 NA NA chr5 137925368 AACxTCT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 58 2 0 7.426519 0.142857 0.02 -0.245556 24 4 705 105 60 60 0 0 TT 6.016135 20 0 563 0 KEEP - Epo NO AA_2 chr5 142687947 142687947 T A exonic Sdk1 nonsynonymous SNV NM_177879:c.T6400A:p.Y2134N exonic Sdk1 nonsynonymous SNV uc009ain.2:c.T5620A:p.Y1874N exonic ENSMUSG00000039683 nonsynonymous SNV ENSMUST00000074546:c.T5620A:p.Y1874N 5qG2 NA NA chr5 142687947 ACCxACT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 173 0 0 83.537185 0.385542 0.02 1.065761 51 32 1425 923 60 60 0 0 TT 23.413863 78 0 2046 0 KEEP + Sdk1 YES AA_2 chr5 143537705 143537705 G A exonic Tnrc18 nonsynonymous SNV NM_178242:c.C2255T:p.P752L exonic Tnrc18 nonsynonymous SNV uc009ajh.1:c.C143T:p.P48L exonic ENSMUSG00000039477 nonsynonymous SNV ENSMUST00000152247:c.C1706T:p.P569L 5qG2 NA NA chr5 143537705 GAGxGGG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119558 0.120436 0.992708 26 0 0 13.493044 0.454545 0.02 -0.096471 6 5 176 144 60 60 0 0 GG 3.008025 10 0 281 0 KEEP - Tnrc18 NO AA_2 chr5 145647253 145647253 T A exonic Smurf1 nonsynonymous SNV NM_001038627:c.A1349T:p.N450I exonic Smurf1 nonsynonymous SNV uc009alv.1:c.A1349T:p.N450I exonic ENSMUSG00000038780 nonsynonymous SNV ENSMUST00000085684:c.A1349T:p.N450I 5qG2 NA NA chr5 145647253 GGGxTGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693605 0.693668 0.999909 63 0 0 19.362664 0.266667 0.02 -0.263091 22 8 625 231 60 60 0 0 TT 7.218059 24 0 656 0 KEEP - Smurf1 YES AA_2 chr5 147647530 147647530 T A UTR3 Rpl21 NA NA UTR3 Rpl21 NA NA UTR3 ENSMUSG00000041453 NA NA 5qG3 NA NA chr5 147647530 TAAxGTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 415 60 28 19.107331 0.121622 0.02 1.144712 65 9 1841 267 60 60 0 0 TT 81.497298 271 0 7310 0 KEEP + Rpl21 YES AA_2 chr5 14911322 14911322 C A intronic Gm9758 NA NA intronic Gm9758 NA NA intronic ENSMUSG00000033219 NA NA 5qA1 "Score=0.976005;Name=No.90292,chr5:14924346" NA chr5 14911322 GACxGAA C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 433 3 156 13.840627 0.0875 0.02 1.190616 73 7 2082 208 43 20 0 0 CC 70.928626 236 0 6351 0 KEEP - Gm9758 NO AA_2 chr5 15030259 15030259 C T exonic Gm17019 nonsynonymous SNV NM_182957:c.G538A:p.A180T exonic Gm17019 nonsynonymous SNV uc008wmq.2:c.G538A:p.A180T exonic ENSMUSG00000091897 nonsynonymous SNV ENSMUST00000167908:c.G538A:p.A180T 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030259 TGGxCCA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1285 18 218 14.303858 0.037453 0.02 6.092696 257 10 7439 280 60 35 0 0 CC 244.773041 824 1 22340 27 KEEP + Gm17019 NO AA_2 chr5 15126151 15126151 C A exonic Speer4d nonsynonymous SNV NM_025759:c.C55A:p.Q19K exonic Speer4d nonsynonymous SNV uc008wmr.1:c.C55A:p.Q19K exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000095006:c.C55A:p.Q19K 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15126151 AAGxAGT C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1406 8 496 13.136597 0.038961 0.02 5.049991 222 9 6491 253 57 33 0 0 CC 253.837308 844 0 23693 0 KEEP + Speer4d NO AA_2 chr5 15128347 15128347 A T exonic Speer4d nonsynonymous SNV NM_025759:c.A401T:p.D134V exonic Speer4d nonsynonymous SNV uc008wmr.1:c.A401T:p.D134V exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000119100:c.A245T:p.D82V 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15128347 CTGxTTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1506 33 365 24.013567 0.050505 0.02 7.506111 282 15 8071 426 60 40 0 0 AA 278.893561 928 0 25067 0 KEEP + Speer4d YES AA_2 chr5 23825994 23825994 G C intronic Kcnh2 NA NA intronic Kcnh2 NA NA intronic ENSMUSG00000038319 NA NA 5qA3 NA NA chr5 23825994 AAGxCAC G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865708 0.865745 0.999957 77 0 0 47.00899 0.435897 0.02 -0.342047 22 17 641 505 60 60 0 0 GG 7.816077 26 0 702 0 KEEP - Kcnh2 NO AA_2 chr5 23854243 23854243 T A exonic Kcnh2 nonsynonymous SNV NM_013569:c.A193T:p.T65S exonic Kcnh2 nonsynonymous SNV uc008wrc.1:c.A193T:p.T65S exonic ENSMUSG00000038319 nonsynonymous SNV ENSMUST00000036092:c.A193T:p.T65S 5qA3 NA NA chr5 23854243 AGGxGCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 128 0 0 9.676959 0.089286 0.02 1.302719 51 5 1417 146 60 60 0 0 TT 15.612582 52 0 1345 0 KEEP - Kcnh2 YES AA_2 chr5 26402123 26402123 G A intronic Gm21671 NA NA intergenic "Speer4a(dist=36078),Gm10471(dist=6589)" NA NA intergenic "ENSMUSG00000073117(dist=17002),ENSMUSG00000073116(dist=6589)" NA NA 5qB1 "Score=0.958652;Name=No.90497,chr5:26366487" NA chr5 26402123 AGCxGGG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 384 3 21 31.75952 0.127119 0.02 2.527084 103 15 2828 441 60 60 0 0 GG 70.637566 235 0 6141 0 KEEP NA Gm21671 NO AA_2 chr5 26430695 26430695 T C exonic 5031410I06Rik nonsynonymous SNV NM_207657:c.A148G:p.R50G exonic 5031410I06Rik nonsynonymous SNV uc008wtf.1:c.A148G:p.R50G exonic ENSMUSG00000051940 nonsynonymous SNV ENSMUST00000063524:c.A148G:p.R50G 5qB1 "Score=0.971388;Name=No.90508,chr5:26432699" NA chr5 26430695 GTCxGTG T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1193 26 262 16.328759 0.058296 0.02 4.342747 210 13 6121 315 55 36 0 0 TT 219.785921 731 0 19955 0 KEEP - 5031410I06Rik NO AA_2 chr5 26445097 26445097 G T intronic Gm10220 NA NA intronic Gm10220 NA NA intronic ENSMUSG00000067698 NA NA 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445097 AAAxTAG G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 675 3 184 13.956482 0.078431 0.02 2.371649 94 8 2814 223 57 32 0 0 GG 147.071561 489 0 13858 0 KEEP - Gm10220 NO AA_2 chr5 26445122 26445122 T A intronic Gm10220 NA NA intronic Gm10220 NA NA intronic ENSMUSG00000067698 NA NA 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445122 GGTxGGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1043 2 312 17.349721 0.076336 0.02 2.3136 121 10 3480 279 57 32 0 0 TT 221.974617 741 1 20244 7 KEEP - Gm10220 YES AA_2 chr5 28049907 28049907 T A intronic Dpp6 NA NA intronic Dpp6 NA NA intronic ENSMUSG00000061576 NA NA 5qB1 NA NA chr5 28049907 ACAxGCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 120 2 0 44.653964 0.377778 0.02 -0.394645 28 17 797 495 60 60 0 0 TT 16.819323 56 0 1478 0 KEEP + Dpp6 YES AA_2 chr5 31344461 31344461 G C intronic Slc5a6 NA NA intronic Slc5a6 NA NA intronic ENSMUSG00000006641 NA NA 5qB1 NA NA chr5 31344461 AAGxCAT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 88 0 0 13.301869 0.171429 0.02 -0.306959 29 6 850 174 60 60 0 0 GG 13.835483 46 0 1280 0 KEEP - Slc5a6 NO AA_2 chr5 33240506 33240506 C G intronic Depdc5 NA NA intronic Depdc5 NA NA intronic ENSMUSG00000037426 NA NA 5qB1 NA NA chr5 33240506 CCAxTTT C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 65 0 0 14.662436 0.375 0.02 -0.140284 10 6 297 164 60 60 0 0 CC 9.625086 32 0 892 0 KEEP + Depdc5 NO AA_2 chr5 33593085 33593085 G A exonic Ctbp1 synonymous SNV NM_001198859:c.C828T:p.A276A exonic Ctbp1 synonymous SNV uc008xal.2:c.C606T:p.A202A exonic ENSMUSG00000037373 synonymous SNV ENSMUST00000079746:c.C828T:p.A276A 5qB1 NA NA chr5 33593085 CTGxGCC G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 38 0 0 10.271289 0.285714 0.02 -0.12279 10 4 296 120 60 60 0 0 GG 5.715046 19 0 530 0 KEEP - Ctbp1 NO AA_2 chr5 4197439 4197439 C T exonic Gm9897 nonsynonymous SNV NM_001042670:c.C1079T:p.S360F exonic Gm9897 nonsynonymous SNV uc008wif.1:c.C1079T:p.S360F exonic ENSMUSG00000053178 nonsynonymous SNV ENSMUST00000065462:c.C1073T:p.S358F 5qA1 "Score=0.953952;Name=No.90045,chr5:3889891" NA chr5 4197439 CATxCAG C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139743 0.139832 0.999366 44 0 10 10.191177 0.333333 0.02 -0.105246 8 4 237 116 60 60 0 0 CC 6.617615 22 0 622 0 KEEP + Gm9897 NO AA_2 chr5 52767653 52767653 T A exonic Ccdc149 nonsynonymous SNV NM_001256059:c.A1409T:p.K470M intergenic "Sod3(dist=6676),Lgi2(dist=161450)" NA NA upstream ENSMUSG00000045790 NA NA 5qC1 NA NA chr5 52767653 CACxTCT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 134 0 0 75.050053 0.466667 0.02 1.169035 32 28 922 797 60 60 0 0 TT 19.247767 64 0 1759 0 KEEP NA Ccdc149 YES AA_2 chr5 72731132 72731132 T A exonic Corin synonymous SNV NM_001122756:c.A1689T:p.P563P exonic Corin synonymous SNV uc008xrj.2:c.A1887T:p.P629P exonic ENSMUSG00000005220 synonymous SNV ENSMUST00000005352:c.A1887T:p.P629P 5qC3.2 NA NA chr5 72731132 CTCxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 45 2 0 31.469155 0.55 0.02 -0.175404 9 11 261 322 60 60 0 0 TT 5.413725 18 0 494 0 KEEP - Corin YES AA_2 chr5 90652923 90652923 G A exonic Cox18 synonymous SNV NM_001033310:c.C42T:p.P14P exonic Cox18 synonymous SNV uc008yar.2:c.C42T:p.P14P exonic ENSMUSG00000035505 synonymous SNV ENSMUST00000048363:c.C42T:p.P14P 5qE1 NA NA chr5 90652923 GGTxGGC G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 75 0 0 9.29335 0.138889 0.02 -0.315602 31 5 872 132 60 60 0 0 GG 9.020458 30 0 811 0 KEEP - Cox18 NO AA_2 chr6 115875898 115875898 C T exonic Ift122 nonsynonymous SNV NM_001167763:c.C3422T:p.P1141L exonic Ift122 nonsynonymous SNV uc009djj.2:c.C974T:p.P325L exonic ENSMUSG00000030323 nonsynonymous SNV ENSMUST00000038234:c.C3425T:p.P1142L 6qE3 NA NA chr6 115875898 TGCxTGA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 48 0 0 16.409922 0.428571 0.02 -0.122788 8 6 236 177 60 60 0 0 CC 8.723766 29 0 825 0 KEEP + Ift122 NO AA_2 chr6 118334227 118334227 C T intronic Bms1 NA NA intronic Bms1 NA NA intronic ENSMUSG00000030138 NA NA 6qF1 NA NA chr6 118334227 ATGxAAA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.229028 0.229173 0.999366 40 0 0 18.23737 0.466667 0.02 -0.131534 8 7 228 194 60 60 0 0 CC 5.113794 17 0 481 0 KEEP - Bms1 NO AA_2 chr6 121825525 121825525 T A exonic Mug1 nonsynonymous SNV NM_008645:c.T2553A:p.S851R exonic Mug1 nonsynonymous SNV uc009dor.1:c.T2553A:p.S851R exonic ENSMUSG00000059908 nonsynonymous SNV ENSMUST00000032228:c.T2553A:p.S851R 6qF1 "Score=0.901196;Name=No.94033,chr6:122155831" NA chr6 121825525 CAGxGCC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 169 1 0 47.600445 0.36 0.02 -0.438469 32 18 896 532 60 60 0 0 TT 28.567069 95 0 2548 0 KEEP + Mug1 YES AA_2 chr6 124173801 124173801 T A exonic Vmn2r27 nonsynonymous SNV NM_001104642:c.A1214T:p.H405L exonic Vmn2r27 nonsynonymous SNV uc009veb.1:c.A1214T:p.H405L exonic ENSMUSG00000072778 nonsynonymous SNV ENSMUST00000100968:c.A1214T:p.H405L 6qF2 NA NA chr6 124173801 GCAxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 273 0 0 118.920143 0.531646 0.02 1.091943 37 42 1042 1226 60 60 0 0 TT 46.612609 155 0 4178 0 KEEP - Vmn2r27 YES AA_2 chr6 124717016 124717016 G A intronic Eno2 NA NA intronic Eno2 NA NA intronic ENSMUSG00000004267 NA NA 6qF2 NA NA chr6 124717016 CCTxCTT G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 283 2 0 131.838113 0.505051 0.02 0.827041 49 50 1458 1378 60 60 0 0 GG 42.715521 142 0 4039 0 KEEP - Eno2 NO AA_2 chr6 124768551 124768551 A G exonic Usp5 synonymous SNV NM_013700:c.T1896C:p.G632G exonic Usp5 synonymous SNV uc009dsa.1:c.T1896C:p.G632G exonic ENSMUSG00000038429 synonymous SNV ENSMUST00000047510:c.T1896C:p.G632G 6qF2 NA NA chr6 124768551 GAAxCCA A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.95445 0.954491 0.999957 87 0 0 10.278494 0.102041 0.02 -0.42967 44 5 1242 149 60 60 0 0 AA 7.518424 25 0 685 0 KEEP - Usp5 NO AA_2 chr6 124949477 124949477 G C exonic Pianp nonsynonymous SNV NM_001145926:c.G230C:p.G77A exonic C530028O21Rik nonsynonymous SNV uc009dst.2:c.G230C:p.G77A exonic ENSMUSG00000030329 nonsynonymous SNV ENSMUST00000032479:c.G230C:p.G77A 6qF2 NA NA chr6 124949477 CAGxCAC G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 142 0 0 11.684441 0.092308 0.02 1.22418 59 6 1717 175 60 60 0 0 GG 18.043209 60 0 1653 0 KEEP + Pianp NO AA_2 chr6 124950638 124950638 A T intronic Pianp NA NA intronic C530028O21Rik NA NA intronic ENSMUSG00000030329 NA NA 6qF2 NA NA chr6 124950638 CCCxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 192 1 0 63.86014 0.369231 0.02 1.223461 41 24 1188 710 60 60 0 0 AA 31.277886 104 0 2835 0 KEEP + Pianp YES AA_2 chr6 126830324 126830324 C A exonic Dyrk4 nonsynonymous SNV NM_207210:c.G1409T:p.R470I exonic Dyrk4 nonsynonymous SNV uc009dvg.1:c.G1331T:p.R444I exonic ENSMUSG00000030345 nonsynonymous SNV ENSMUST00000032495:c.G1304T:p.R435I 6qF3 NA NA chr6 126830324 TATxTTT C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 115 2 0 15.436161 0.2 0.02 -0.315738 28 7 841 197 60 60 0 0 CC 19.838819 66 0 1866 0 KEEP - Dyrk4 NO AA_2 chr6 128481291 128481291 T G intergenic "Pzp(dist=4553),BC048546(dist=8549)" NA NA intergenic "Pzp(dist=4553),BC048546(dist=8549)" NA NA ncRNA_exonic ENSMUSG00000058700 NA NA 6qF3 NA NA chr6 128481291 CCCxTGA T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 319 5 11 26.365093 0.152174 0.02 0.879743 78 14 2268 367 60 60 0 0 TT 58.653287 195 0 5446 0 KEEP NA Pzp NO AA_2 chr6 142192342 142192342 C T exonic Slco1a5 unknown UNKNOWN exonic Slco1a5 nonsynonymous SNV uc009eoz.1:c.G1437A:p.M479I exonic ENSMUSG00000063975 nonsynonymous SNV ENSMUST00000081380:c.G1437A:p.M479I 6qG2 NA NA chr6 142192342 TACxATG C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 231 4 0 104.067466 0.481013 0.02 1.199434 41 38 1188 1097 60 60 0 0 CC 36.380482 121 0 3377 0 KEEP - Slco1a5 NO AA_2 chr6 146900920 146900920 A G exonic 1700034J05Rik nonsynonymous SNV NM_001164236:c.T757C:p.F253L exonic 1700034J05Rik nonsynonymous SNV uc009eso.2:c.T760C:p.F254L exonic ENSMUSG00000040163 nonsynonymous SNV ENSMUST00000036592:c.T760C:p.F254L 6qG3 NA NA chr6 146900920 GAAxGTT A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 75 0 0 17.030354 0.259259 0.02 -0.236799 20 7 586 204 60 60 0 0 AA 11.730349 39 0 1082 0 KEEP - 1700034J05Rik NO AA_2 chr6 148273784 148273784 A T exonic Tmtc1 nonsynonymous SNV NM_198967:c.T1163A:p.L388Q exonic Tmtc1 nonsynonymous SNV uc009eti.2:c.T1163A:p.L388Q exonic ENSMUSG00000030306 nonsynonymous SNV ENSMUST00000060095:c.T1163A:p.L388Q 6qG3 NA NA chr6 148273784 AGCxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 51 0 0 25.58763 0.529412 0.02 -0.149098 8 9 235 264 60 60 0 0 AA 7.810655 26 0 685 0 KEEP - Tmtc1 YES AA_2 chr6 29383674 29383674 C T exonic Flnc synonymous SNV NM_001081185:c.C216T:p.I72I exonic Flnc synonymous SNV uc009bdm.1:c.C216T:p.I72I exonic ENSMUSG00000068699 synonymous SNV ENSMUST00000065090:c.C216T:p.I72I 6qA3.3 NA NA chr6 29383674 CATxGCG C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 148 0 0 21.639048 0.15625 0.02 1.134794 54 10 1413 289 60 60 0 0 CC 19.531562 65 0 1721 0 KEEP + Flnc NO AA_2 chr6 3326863 3326863 T A exonic Samd9l nonsynonymous SNV NM_010156:c.A397T:p.T133S exonic Samd9l nonsynonymous SNV uc009auy.2:c.A397T:p.T133S exonic ENSMUSG00000047735 nonsynonymous SNV ENSMUST00000120087:c.A397T:p.T133S 6qA1 NA NA chr6 3326863 TCGxAAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 141 0 0 93.249469 0.459459 0.02 1.144593 40 34 1115 992 60 60 0 0 TT 16.212726 54 0 1427 0 KEEP - Samd9l YES AA_2 chr6 38124189 38124189 G C exonic D630045J12Rik nonsynonymous SNV NM_194061:c.C3773G:p.A1258G exonic D630045J12Rik nonsynonymous SNV uc009bjv.2:c.C3350G:p.A1117G exonic ENSMUSG00000063455 nonsynonymous SNV ENSMUST00000117556:c.C2936G:p.A979G 6qB1 NA NA chr6 38124189 ATGxCTG G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 129 0 0 85.149148 0.545455 0.02 1.409818 25 30 732 873 60 60 0 0 GG 19.810803 66 0 1775 0 KEEP - D630045J12Rik NO AA_2 chr6 39413425 39413425 C A exonic Dennd2a nonsynonymous SNV NM_172477:c.G2997T:p.K999N exonic Dennd2a nonsynonymous SNV uc009blw.1:c.G1218T:p.K406N exonic ENSMUSG00000038456 nonsynonymous SNV ENSMUST00000036877:c.G2997T:p.K999N 6qB1 "Score=0.942699;Name=No.38584,chr13:61342747" NA chr6 39413425 TTTxTTG C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 73 2 0 10.498964 0.172414 0.02 -0.25434 24 5 714 139 60 60 0 0 CC 9.626747 32 0 921 0 KEEP - Dennd2a NO AA_2 chr6 42543885 42543885 T A exonic Fam115e stopgain SNV NM_203396:c.A931T:p.K311X exonic Fam115e stopgain SNV uc009brm.1:c.A931T:p.K311X exonic ENSMUSG00000018656 stopgain SNV ENSMUST00000069023:c.A931T:p.K311X 6qB2.1 NA NA chr6 42543885 ACTxCAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 102 0 0 57.862089 0.478261 0.02 -0.403402 24 22 697 612 60 60 0 0 TT 14.137067 47 0 1310 0 KEEP - Fam115e YES AA_2 chr6 43124165 43124165 T A exonic Olfr13 nonsynonymous SNV NM_146652:c.T179A:p.F60Y exonic Olfr13 nonsynonymous SNV uc009bsi.1:c.T179A:p.F60Y exonic ENSMUSG00000043605 nonsynonymous SNV ENSMUST00000059512:c.T179A:p.F60Y 6qB2.1 NA NA chr6 43124165 ACTxCTT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 288 0 0 124.113978 0.461538 0.02 2.47844 56 48 1626 1324 60 60 0 0 TT 42.080257 140 0 3857 0 KEEP + Olfr13 YES AA_2 chr6 46806099 46806099 T A intronic Cntnap2 NA NA intronic Cntnap2 NA NA intronic ENSMUSG00000039419 NA NA 6qB2.3 NA NA chr6 46806099 CCCxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999999 75 0 0 26.747322 0.384615 0.02 -0.22803 16 10 469 295 60 60 0 0 TT 10.515117 35 0 955 0 KEEP + Cntnap2 YES AA_2 chr6 48438313 48438313 A T intronic Sspo NA NA intronic Sspo NA NA intronic ENSMUSG00000029797 NA NA 6qB2.3 NA NA chr6 48438313 ACCxTTC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 DBSNP COVERED 0.76082 0.760887 0.999912 74 0 0 34.9143 0.40625 0.02 -0.280645 19 13 548 381 60 60 0 0 AA 11.127491 37 0 1002 0 KEEP + Sspo YES AA_2 chr6 48548021 48548021 A T UTR3 Repin1 NA NA UTR3 Repin1 NA NA UTR3 ENSMUSG00000052751 NA NA 6qB2.3 NA NA chr6 48548021 TACxCTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612365 0.612407 0.999931 61 0 0 40.458549 0.518519 0.02 -0.236798 13 14 370 419 60 60 0 0 AA 7.517532 25 0 670 0 KEEP + Repin1 YES AA_2 chr6 48856390 48856390 T A exonic Aoc1 synonymous SNV NM_001161621:c.T1200A:p.A400A exonic Abp1 synonymous SNV uc009bwb.2:c.T1200A:p.A400A exonic ENSMUSG00000029811 synonymous SNV ENSMUST00000162948:c.T1200A:p.A400A 6qB2.3 NA NA chr6 48856390 CGCxACT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 118 2 0 60.352215 0.511628 0.02 -0.377083 21 22 595 628 60 60 0 0 TT 18.345634 61 0 1664 0 KEEP + Aoc1 YES AA_2 chr6 55928440 55928440 A C exonic Ccdc129 nonsynonymous SNV NM_001081665:c.A3038C:p.K1013T exonic Ccdc129 nonsynonymous SNV uc009cax.1:c.A3038C:p.K1013T exonic ENSMUSG00000037973 nonsynonymous SNV ENSMUST00000044729:c.A3038C:p.K1013T 6qB3 NA NA chr6 55928440 AGAxGTC A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 61 0 0 16.808633 0.32 0.02 -0.219206 17 8 499 198 60 60 0 0 AA 8.723071 29 0 811 0 KEEP + Ccdc129 NO AA_2 chr6 56974994 56974994 A T exonic Vmn1r7 nonsynonymous SNV NM_001166710:c.T274A:p.C92S exonic Vmn1r7 nonsynonymous SNV uc012emm.1:c.T274A:p.C92S exonic ENSMUSG00000061481 nonsynonymous SNV ENSMUST00000075534:c.T274A:p.C92S 6qB3 "Score=0.940863;Name=No.93687,chr6:56985812" NA chr6 56974994 TGCxGAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 551 6 261 39.040795 0.204819 0.02 1.065589 66 17 1942 492 36 36 0 0 AA 92.029499 306 0 8490 0 KEEP - Vmn1r7 YES AA_2 chr6 5912013 5912013 T A intronic Dync1i1 NA NA intronic Dync1i1 NA NA intronic ENSMUSG00000029757 NA NA 6qA1 NA NA chr6 5912013 CTTxGTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 67 0 0 38.609281 0.451613 0.02 -0.280648 17 14 492 412 60 60 0 0 TT 9.023083 30 0 825 0 KEEP + Dync1i1 YES AA_2 chr6 66726372 66726372 T A exonic Vmn1r38 synonymous SNV NM_134168:c.A753T:p.T251T exonic Vmn1r38 synonymous SNV uc009ceu.1:c.A753T:p.T251T exonic ENSMUSG00000068425 synonymous SNV ENSMUST00000089829:c.A753T:p.T251T 6qC1 NA NA chr6 66726372 GACxGTT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 165 0 0 52.627904 0.487179 0.02 -0.342032 20 19 582 553 60 60 0 0 TT 33.685726 112 0 3099 0 KEEP - Vmn1r38 YES AA_2 chr6 71169286 71169286 A T exonic Smyd1 nonsynonymous SNV NM_009762:c.T1072A:p.S358T exonic Smyd1 nonsynonymous SNV uc009cgi.2:c.T1072A:p.S358T exonic ENSMUSG00000055027 nonsynonymous SNV ENSMUST00000068379:c.T1057A:p.S353T 6qC1 NA NA chr6 71169286 GTGxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.422559 0.423478 0.997832 43 0 0 26.857749 0.47619 0.02 -0.184167 11 10 319 284 60 60 0 0 AA 4.812846 16 0 450 0 KEEP - Smyd1 YES AA_2 chr6 71773722 71773722 T G exonic Mrpl35 synonymous SNV NM_025430:c.A31C:p.R11R exonic Mrpl35 synonymous SNV uc009chd.2:c.A31C:p.R11R exonic ENSMUSG00000052962 synonymous SNV ENSMUST00000065103:c.A31C:p.R11R 6qC1 NA NA chr6 71773722 CTCxCAC T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 110 2 0 14.973059 0.179487 0.02 -0.342021 32 7 931 196 60 60 0 0 TT 15.033596 50 0 1370 0 KEEP - Mrpl35 NO AA_2 chr6 79972859 79972859 A G exonic Lrrtm4 nonsynonymous SNV NM_001134743:c.A1259G:p.H420R exonic Lrrtm4 nonsynonymous SNV uc009ckf.2:c.A1259G:p.H420R exonic ENSMUSG00000052581 nonsynonymous SNV ENSMUST00000064509:c.A323G:p.H108R 6qC3 NA NA chr6 79972859 AGCxCGT A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 63 0 0 8.481051 0.181818 0.02 -0.1929 18 4 498 111 60 60 0 0 AA 9.924246 33 0 889 0 KEEP + Lrrtm4 NO AA_2 chr6 83112315 83112315 C G exonic 1700003E16Rik synonymous SNV NM_027948:c.C1227G:p.G409G exonic 1700003E16Rik synonymous SNV uc009cmx.2:c.C576G:p.G192G exonic ENSMUSG00000030030 synonymous SNV ENSMUST00000032106:c.C1227G:p.G409G 6qC3 NA NA chr6 83112315 GGGxCCG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 100 0 0 25.210301 0.22 0.02 -0.438486 39 11 1128 314 60 60 0 0 CC 13.814696 46 0 1239 0 KEEP + 1700003E16Rik NO AA_2 chr6 83139666 83139666 A T exonic Dctn1 nonsynonymous SNV NM_001198867:c.A659T:p.Q220L exonic Dctn1 nonsynonymous SNV uc009cna.2:c.A659T:p.Q220L exonic ENSMUSG00000031865 nonsynonymous SNV ENSMUST00000113907:c.A368T:p.Q123L 6qC3 NA NA chr6 83139666 AGCxGGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053834 0.054137 0.994391 23 0 0 7.832608 0.375 0.02 -0.070164 5 3 148 87 60 60 0 0 AA 3.909184 13 0 357 0 KEEP + Dctn1 YES AA_2 chr6 86407869 86407869 A T exonic C87436 stopgain SNV NM_001243741:c.A1174T:p.R392X exonic C87436 stopgain SNV uc009cru.2:c.A1204T:p.R402X exonic ENSMUSG00000046679 stopgain SNV ENSMUST00000050497:c.A1204T:p.R402X 6qD1 NA NA chr6 86407869 CAGxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 63 2 0 30.022809 0.5 0.02 -0.192938 11 11 322 314 60 60 0 0 AA 9.926738 33 0 932 0 KEEP + C87436 YES AA_2 chr6 88468711 88468711 C G UTR5 Sec61a1 NA NA UTR5 Sec61a1 NA NA UTR5 ENSMUSG00000030082 NA NA 6qD1 NA NA chr6 88468711 ACGxCCG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.99986 43 0 0 8.78144 0.235294 0.02 -0.149078 13 4 384 109 60 60 0 0 CC 5.652123 19 0 497 0 KEEP - Sec61a1 NO AA_2 chr6 90626817 90626817 T A exonic Iqsec1 nonsynonymous SNV NM_001134383:c.A1981T:p.N661Y exonic Iqsec1 nonsynonymous SNV uc009cxq.2:c.A1981T:p.N661Y exonic ENSMUSG00000034312 nonsynonymous SNV ENSMUST00000043863:c.A1984T:p.N662Y 6qD1 NA NA chr6 90626817 TGTxGAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 130 0 0 53.251206 0.408163 0.02 -0.429729 29 20 833 581 60 60 0 0 TT 18.346791 61 0 1675 0 KEEP - Iqsec1 YES AA_2 chr6 94649511 94649511 T A exonic Lrig1 nonsynonymous SNV NM_008377:c.A169T:p.S57C exonic Lrig1 nonsynonymous SNV uc009czu.1:c.A169T:p.S57C exonic ENSMUSG00000030029 nonsynonymous SNV ENSMUST00000032105:c.A169T:p.S57C 6qD2 NA NA chr6 94649511 CACxGCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161282 0.162467 0.992708 25 0 0 20.44235 0.538462 0.02 -0.114017 6 7 173 210 60 60 0 0 TT 3.007316 10 0 269 0 KEEP - Lrig1 YES AA_2 chr7 108087159 108087159 C G exonic P2ry6 nonsynonymous SNV NM_183168:c.G506C:p.G169A exonic P2ry6 nonsynonymous SNV uc009inw.2:c.G506C:p.G169A exonic ENSMUSG00000048779 nonsynonymous SNV ENSMUST00000060174:c.G506C:p.G169A 7qE3 NA NA chr7 108087159 ATGxCTG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 69 0 0 14.664873 0.272727 0.02 -0.21049 16 6 472 174 60 60 0 0 CC 10.22189 34 0 912 0 KEEP - P2ry6 NO AA_2 chr7 109859865 109859865 A T UTR3 Olfr558 NA NA UTR3 Olfr558 NA NA UTR3 ENSMUSG00000070423 NA NA 7qE3 NA NA chr7 109859865 GAGxCTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.99986 42 0 0 25.387353 0.529412 0.02 -0.149096 8 9 236 262 60 60 0 0 AA 5.714174 19 0 517 0 KEEP + Olfr558 YES AA_2 chr7 110335773 110335773 A T exonic Olfr592 synonymous SNV NM_207556:c.A657T:p.S219S exonic Olfr592 synonymous SNV uc009ith.1:c.A657T:p.S219S exonic ENSMUSG00000073956 synonymous SNV ENSMUST00000098207:c.A657T:p.S219S 7qE3 NA NA chr7 110335773 CTCxTAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 147 2 0 91.998108 0.478261 0.02 1.18839 36 33 1032 970 60 60 0 0 AA 21.352415 71 0 1919 0 KEEP + Olfr592 YES AA_2 chr7 112172919 112172919 G A exonic Olfr675 nonsynonymous SNV NM_001011848:c.C562T:p.R188C exonic Olfr675 nonsynonymous SNV uc009ixj.1:c.C562T:p.R188C exonic ENSMUSG00000063117 nonsynonymous SNV ENSMUST00000073102:c.C562T:p.R188C 7qE3 NA NA chr7 112172919 GACxGGC G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322764 0.322807 0.999869 39 0 0 35.850437 0.666667 0.02 -0.157827 6 12 155 351 60 60 0 0 GG 6.262678 21 0 494 0 KEEP - Olfr675 NO AA_2 chr7 11219422 11219422 A T exonic Vmn1r70 stopgain SNV NM_134228:c.A487T:p.R163X exonic Vmn1r70 stopgain SNV uc009fdh.1:c.A487T:p.R163X exonic ENSMUSG00000045340 stopgain SNV ENSMUST00000055847:c.A487T:p.R163X 7qA1 NA NA chr7 11219422 TTTxGAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 65 0 0 31.126551 0.461538 0.02 -0.227986 14 12 409 332 60 60 0 0 AA 9.623827 32 0 870 0 KEEP + Vmn1r70 YES AA_2 chr7 112861940 112861940 T G intergenic "Timm10b(dist=71581),Rrp8(dist=18304)" NA NA intergenic "Dnhd1(dist=19755),Rrp8(dist=18304)" NA NA exonic ENSMUSG00000030882 nonsynonymous SNV ENSMUST00000145988:c.T11315G:p.L3772R 7qE3 NA NA chr7 112861940 AGCxTGA T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 55 0 0 13.763563 0.375 0.02 -0.140294 10 6 289 155 60 60 0 0 TT 8.723253 29 0 814 0 KEEP NA Timm10b NO AA_2 chr7 11380609 11380609 C A ncRNA_exonic Zscan4a NA NA exonic CH29-166C20.9-001 stopgain SNV uc012eyt.1:c.G1057T:p.E353X intergenic "ENSMUSG00000059206(dist=45722),ENSMUSG00000091643(dist=105489)" NA NA 7qA1 "Score=0.965281;Name=No.98085,chr7:11625617" NA chr7 11380609 CCTxCCT C A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 185 1 0 29.314042 0.22807 0.02 1.195311 44 13 1312 364 60 60 0 0 CC 35.146527 117 0 3260 0 KEEP - Zscan4a NO AA_2 chr7 113988507 113988507 T C exonic Olfr703 synonymous SNV NM_146596:c.T381C:p.C127C exonic Olfr703 synonymous SNV uc009jah.1:c.T381C:p.C127C exonic ENSMUSG00000073901 synonymous SNV ENSMUST00000098142:c.T381C:p.C127C 7qE3 NA NA chr7 113988507 TTGxCAT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 107 0 0 24.996244 0.27027 0.02 -0.324484 27 10 770 296 60 60 0 0 TT 18.030806 60 0 1636 0 KEEP + Olfr703 NO AA_2 chr7 11651860 11651860 T A intergenic "Zscan4c(dist=55964),Zscan4d(dist=95132)" NA NA intergenic "AB340534(dist=25660),Zscan4d(dist=95132)" NA NA intergenic "ENSMUSG00000054272(dist=55964),ENSMUSG00000090714(dist=95132)" NA NA 7qA1 "Score=0.965281;Name=No.98085,chr7:11358013" NA chr7 11651860 ACCxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 265 0 45 34.809168 0.28 0.02 1.346447 36 14 1031 410 60 60 0 0 TT 45.039809 159 1 4399 26 KEEP NA Zscan4c YES AA_2 chr7 116944169 116944169 T A splicing Scube2(NM_020052:exon22:c.2675-2A>T) NA NA splicing "Scube2(uc009jej.2:exon22:c.2675-2A>T,uc009jei.2:exon22:c.2762-2A>T)" NA NA splicing "ENSMUSG00000007279(ENSMUST00000152030:exon10:c.1290-2A>T,ENSMUST00000106728:exon18:c.2186-2A>T,ENSMUST00000106729:exon22:c.2675-2A>T,ENSMUST00000007423:exon22:c.2762-2A>T)" NA NA 7qF1 NA NA chr7 116944169 CTCxGTT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.99986 34 0 0 21.006933 0.636364 0.02 -0.096477 4 7 118 208 60 60 0 0 TT 5.714584 19 0 522 0 KEEP - Scube2 YES AA_2 chr7 120529490 120529490 G C exonic Pth nonsynonymous SNV NM_020623:c.C189G:p.H63Q exonic Pth nonsynonymous SNV uc009jhm.1:c.C189G:p.H63Q exonic ENSMUSG00000059077 nonsynonymous SNV ENSMUST00000079793:c.C189G:p.H63Q 7qF1 NA NA chr7 120529490 ATTxTGC G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 165 1 0 43.742048 0.4 0.02 -0.350812 24 16 693 478 60 60 0 0 GG 30.372475 101 0 2793 0 KEEP - Pth NO AA_2 chr7 127788666 127788666 T G exonic Uqcrc2 synonymous SNV NM_025899:c.T516G:p.R172R exonic Uqcrc2 synonymous SNV uc009jms.1:c.T516G:p.R172R exonic ENSMUSG00000030884 synonymous SNV ENSMUST00000033176:c.T516G:p.R172R 7qF2 NA NA chr7 127788666 AGGxATC T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 100 2 0 17.902543 0.304348 0.02 -0.201701 16 7 447 207 60 60 0 0 TT 18.030758 60 0 1576 0 KEEP + Uqcrc2 NO AA_2 chr7 127788667 127788667 A T exonic Uqcrc2 nonsynonymous SNV NM_025899:c.A517T:p.I173F exonic Uqcrc2 nonsynonymous SNV uc009jms.1:c.A517T:p.I173F exonic ENSMUSG00000030884 nonsynonymous SNV ENSMUST00000033176:c.A517T:p.I173F 7qF2 NA NA chr7 127788667 GGTxTCA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 104 2 0 16.848986 0.291667 0.02 -0.210456 17 7 472 198 60 60 0 0 AA 18.91715 63 0 1650 0 KEEP + Uqcrc2 YES AA_2 chr7 129316838 129316838 T A exonic Ern2 nonsynonymous SNV NM_012016:c.A1910T:p.D637V exonic Ern2 nonsynonymous SNV uc009joq.1:c.A1910T:p.D637V exonic ENSMUSG00000030866 nonsynonymous SNV ENSMUST00000033153:c.A1910T:p.D637V 7qF3 NA NA chr7 129316838 CTGxCAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 123 2 0 68.708726 0.531915 0.02 -0.412112 22 25 629 709 60 60 0 0 TT 20.42709 68 0 1815 0 KEEP - Ern2 YES AA_2 chr7 132842419 132842419 T A intronic Gtf3c1 NA NA intronic Gtf3c1 NA NA intronic ENSMUSG00000032777 NA NA 7qF3 NA NA chr7 132842419 ACGxAGT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098994 0.099721 0.992708 22 0 0 10.786736 0.4 0.02 -0.087662 6 4 157 118 60 60 0 0 TT 3.007316 10 0 269 0 KEEP - Gtf3c1 YES AA_2 chr7 134755061 134755061 G C exonic Zfp629 nonsynonymous SNV NM_177226:c.C1089G:p.H363Q exonic Zfp629 nonsynonymous SNV uc009jwh.1:c.C1089G:p.H363Q exonic ENSMUSG00000045639 nonsynonymous SNV ENSMUST00000058038:c.C1089G:p.H363Q 7qF3 NA NA chr7 134755061 CTGxTGC G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 99 1 0 9.369359 0.190476 0.02 -0.184167 17 4 486 119 60 60 0 0 GG 18.94579 63 0 1734 0 KEEP - Zfp629 NO AA_2 chr7 135333241 135333241 T A intronic Itgad NA NA intronic Itgad NA NA intronic ENSMUSG00000070369 NA NA 7qF3 "Score=0.98419;Name=No.101633,chr7:135278984" NA chr7 135333241 CTTxAGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 85 0 0 55.875044 0.488372 0.02 -0.377085 22 21 627 588 60 60 0 0 TT 11.429517 38 0 1050 0 KEEP + Itgad YES AA_2 chr7 135336942 135336942 A T ncRNA_exonic 4931431B13Rik NA NA ncRNA_exonic AK007137 NA NA intronic ENSMUSG00000070369 NA NA 7qF3 NA NA chr7 135336942 GTGxGTT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 121 0 0 36.239739 0.280702 0.02 1.19539 41 16 1187 433 60 60 0 0 AA 17.439759 58 0 1579 0 KEEP - 4931431B13Rik YES AA_2 chr7 139270479 139270479 T A exonic Cpxm2 nonsynonymous SNV NM_018867:c.A890T:p.E297V exonic Cpxm2 nonsynonymous SNV uc009kbu.2:c.A890T:p.E297V exonic ENSMUSG00000030862 nonsynonymous SNV ENSMUST00000033149:c.A890T:p.E297V 7qF3 NA NA chr7 139270479 ATCxCCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.229142 0.229173 0.999863 42 0 0 15.377315 0.4 0.02 -0.131554 9 6 269 169 60 60 0 0 TT 6.015834 20 0 559 0 KEEP - Cpxm2 YES AA_2 chr7 147286920 147286920 T A intronic Fuom NA NA ncRNA_UTR3 1810014F10Rik NA NA UTR3 ENSMUSG00000025466 NA NA 7qF4 NA NA chr7 147286920 CACxCCC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.457694 0.457757 0.999863 44 0 0 37.135767 0.590909 0.02 -0.192934 9 13 258 374 60 60 0 0 TT 6.015362 20 0 556 0 KEEP - Fuom YES AA_2 chr7 147652377 147652377 T C exonic Olfr533 synonymous SNV NM_001011815:c.T276C:p.S92S exonic Olfr533 synonymous SNV uc009khs.1:c.T276C:p.S92S exonic ENSMUSG00000056883 synonymous SNV ENSMUST00000071755:c.T276C:p.S92S 7qF4 "Score=0.943193;Name=No.101640,chr7:147558534" NA chr7 147652377 ATCxTAT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 265 4 15 40.540527 0.207317 0.02 1.173008 65 17 1901 506 60 60 0 0 TT 43.909151 146 0 4054 0 KEEP + Olfr533 NO AA_2 chr7 148039817 148039817 T C UTR3 Bet1l NA NA UTR3 Bet1l NA NA UTR3 ENSMUSG00000025484 NA NA 7qF5 NA NA chr7 148039817 GCCxCTT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 115 1 0 18.925068 0.205128 0.02 -0.342033 31 8 907 237 60 60 0 0 TT 17.443967 58 0 1606 0 KEEP - Bet1l NO AA_2 chr7 148378449 148378449 T A exonic Hras nonsynonymous SNV NM_001130443:c.A182T:p.Q61L exonic Hras nonsynonymous SNV uc009kju.2:c.A182T:p.Q61L exonic ENSMUSG00000025499 nonsynonymous SNV ENSMUST00000026572:c.A182T:p.Q61L 7qF5 NA NA chr7 148378449 TCTxGAC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 131 0 0 29.870142 0.27907 0.02 -0.377115 31 12 893 352 60 60 0 0 TT 19.536505 65 0 1772 0 KEEP - Hras YES AA_2 chr7 148446027 148446027 G A exonic Phrf1 nonsynonymous SNV NM_001081118:c.G3712A:p.V1238M exonic Phrf1 nonsynonymous SNV uc009kke.1:c.G1039A:p.V347M exonic ENSMUSG00000038611 nonsynonymous SNV ENSMUST00000122143:c.G3235A:p.V1079M 7qF5 NA NA chr7 148446027 GAGxTGG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 122 0 0 7.498663 0.081633 0.02 -0.438396 45 4 1293 116 60 60 0 0 GG 18.640386 62 0 1694 0 KEEP + Phrf1 NO AA_2 chr7 148993073 148993073 T A exonic Muc5ac synonymous SNV NM_010844:c.T4212A:p.P1404P exonic Muc5ac synonymous SNV uc009kmb.1:c.T4212A:p.P1404P exonic ENSMUSG00000037974 synonymous SNV ENSMUST00000041924:c.T4212A:p.P1404P 7qF5 NA NA chr7 148993073 TCCxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 45 0 0 20.298666 0.583333 0.02 -0.105245 5 7 146 205 60 60 0 0 TT 8.401822 28 0 759 0 KEEP + Muc5ac YES AA_2 chr7 149051546 149051546 G A exonic Muc5b nonsynonymous SNV NM_028801:c.G12160A:p.G4054S exonic Muc5b nonsynonymous SNV uc009kmc.1:c.G12160A:p.G4054S exonic ENSMUSG00000066108 nonsynonymous SNV ENSMUST00000165147:c.G12160A:p.G4054S 7qF5 NA NA chr7 149051546 CCTxGCT G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 516 2 0 180.537675 0.5 0.02 2.519298 66 66 1962 1888 60 60 0 0 GG 91.133484 303 0 8566 0 KEEP + Muc5b NO AA_2 chr7 150687723 150687723 T A splicing Phlda2(NM_009434:exon3:c.435-2A>T) NA NA splicing Phlda2(uc009kpj.1:exon3:c.435-2A>T) NA NA splicing ENSMUSG00000010760(ENSMUST00000010904:exon3:c.435-2A>T) NA NA 7qF5 NA NA chr7 150687723 TTCxGTA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 324 1 0 130.410861 0.528736 0.02 1.030505 41 46 1208 1346 60 60 0 1 TT 55.011705 183 0 4994 0 KEEP - Phlda2 YES AA_2 chr7 150718281 150718281 T A exonic Nap1l4 nonsynonymous SNV NM_008672:c.A539T:p.Y180F exonic Nap1l4 nonsynonymous SNV uc009kpk.1:c.A539T:p.Y180F exonic ENSMUSG00000059119 nonsynonymous SNV ENSMUST00000072727:c.A539T:p.Y180F 7qF5 NA NA chr7 150718281 TCAxATT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 112 1 0 54.293192 0.575758 0.02 -0.289396 14 19 388 550 60 60 0 0 TT 18.944387 63 0 1675 0 KEEP - Nap1l4 YES AA_2 chr7 152048864 152048864 T A UTR3 Fgf4 NA NA UTR3 Fgf4 NA NA UTR3 ENSMUSG00000050917 NA NA 7qF5 NA NA chr7 152048864 GCCxCAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 57 0 0 23.883567 0.473684 0.02 -0.16663 10 9 296 253 60 60 0 0 TT 9.898232 33 0 887 0 KEEP + Fgf4 YES AA_2 chr7 15879630 15879630 A T intergenic "Gm4745(dist=628285),Obox2(dist=94570)" NA NA intergenic "Gm4745(dist=628285),Obox2(dist=94570)" NA NA intergenic "ENSMUSG00000075887(dist=381819),ENSMUSG00000074369(dist=59756)" NA NA 7qA1 "Score=0.99133;Name=No.98676,chr7:16060906" NA chr7 15879630 GACxACA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 288 0 88 31.175499 0.212121 0.02 1.214858 52 14 1486 393 57 38 0 0 AA 52.926551 176 0 4769 0 KEEP NA Gm4745 YES AA_2 chr7 16564396 16564396 T A exonic Gltscr1 nonsynonymous SNV NM_001081418:c.A3074T:p.H1025L exonic Gltscr1 nonsynonymous SNV uc009fgu.1:c.A3074T:p.H1025L exonic ENSMUSG00000070808 nonsynonymous SNV ENSMUST00000094821:c.A3074T:p.H1025L 7qA2 NA NA chr7 16564396 ACAxGGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 84 2 0 58.935006 0.689655 0.02 -0.254297 9 20 250 572 60 60 0 0 TT 11.127179 37 0 1000 0 KEEP - Gltscr1 YES AA_2 chr7 17379095 17379095 C G exonic Slc1a5 nonsynonymous SNV NM_009201:c.C966G:p.C322W exonic Slc1a5 nonsynonymous SNV uc009fib.1:c.C966G:p.C322W exonic ENSMUSG00000001918 nonsynonymous SNV ENSMUST00000108496:c.C966G:p.C322W 7qA2 NA NA chr7 17379095 GTGxTGC C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 122 0 0 55.703649 0.512821 0.02 -0.342036 19 20 554 579 60 60 0 0 CC 20.743868 69 0 1890 0 KEEP + Slc1a5 NO AA_2 chr7 18848369 18848369 T G exonic Mill1 nonsynonymous SNV NM_153749:c.T535G:p.F179V exonic Mill1 nonsynonymous SNV uc009fjh.1:c.T535G:p.F179V exonic ENSMUSG00000054005 nonsynonymous SNV ENSMUST00000066780:c.T535G:p.F179V 7qA2 NA NA chr7 18848369 AACxTCC T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 190 0 0 37.435212 0.326923 0.02 1.239284 35 17 1018 436 60 60 0 0 TT 34.290735 114 0 3191 0 KEEP + Mill1 NO AA_2 chr7 19844758 19844758 T A intronic Vasp NA NA intronic Vasp NA NA ncRNA_intronic ENSMUSG00000089636 NA NA 7qA3 NA NA chr7 19844758 CCCxACT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 67 0 0 22.630416 0.333333 0.02 -0.236784 18 9 517 258 60 60 0 0 TT 8.20312 30 1 795 7 KEEP - Vasp YES AA_2 chr7 20080302 20080302 A G intergenic "Mark4(dist=36459),Bloc1s3(dist=10851)" NA NA intronic Exoc3l2 NA NA intronic ENSMUSG00000011263 NA NA 7qA3 NA NA chr7 20080302 CCAxCAG A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 99 0 0 24.598635 0.375 0.02 -0.298188 15 9 432 272 70 60 0 0 AA 19.213218 64 0 1735 0 KEEP + Mark4 NO AA_2 chr7 25566266 25566266 A C intronic Ceacam10 NA NA intronic Ceacam10 NA NA intronic ENSMUSG00000054169 NA NA 7qA3 NA NA chr7 25566266 TTAxCCT A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 79 0 0 10.99936 0.172414 0.02 -0.254265 24 5 662 144 60 60 0 0 AA 11.119058 37 0 979 0 KEEP + Ceacam10 NO AA_2 chr7 27625452 27625452 G C exonic Cyp2a5 nonsynonymous SNV NM_007812:c.G905C:p.G302A exonic Cyp2a5 nonsynonymous SNV uc009fuv.1:c.G905C:p.G302A exonic ENSMUSG00000005547 nonsynonymous SNV ENSMUST00000005685:c.G905C:p.G302A 7qA3 "Score=0.974651;Name=No.100280,chr7:27077214" NA chr7 27625452 CTGxCAC G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.351366 0.353947 0.992708 33 2 1 18.2089 0.368421 0.02 -0.166636 12 7 352 203 60 60 0 0 GG 3.308524 11 0 304 0 KEEP + Cyp2a5 NO AA_2 chr7 29145794 29145794 G A exonic Plekhg2 nonsynonymous SNV NM_001083912:c.C3053T:p.P1018L exonic Plekhg2 nonsynonymous SNV uc009fym.1:c.C668T:p.P223L exonic ENSMUSG00000037552 nonsynonymous SNV ENSMUST00000121085:c.C3128T:p.P1043L 7qA3 NA NA chr7 29145794 TTTxGGT G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 133 0 0 106.294941 0.616667 0.02 1.35721 23 37 681 1060 60 60 0 0 GG 16.54528 55 0 1570 0 KEEP - Plekhg2 NO AA_2 chr7 29683390 29683390 T A exonic Actn4 nonsynonymous SNV NM_021895:c.A1663T:p.M555L exonic Actn4 nonsynonymous SNV uc009gah.1:c.A1663T:p.M555L exonic ENSMUSG00000054808 nonsynonymous SNV ENSMUST00000068045:c.A1663T:p.M555L 7qA3 NA NA chr7 29683390 ACAxGTC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 152 2 0 47.796839 0.375 0.02 -0.42096 30 18 855 530 60 60 0 0 TT 22.53303 75 0 1982 0 KEEP - Actn4 YES AA_2 chr7 30185754 30185754 G T exonic Sipa1l3 synonymous SNV NM_001081028:c.C108A:p.P36P exonic "Sipa1l3,mKIAA0545" synonymous SNV uc009gbu.1:c.C108A:p.P36P exonic ENSMUSG00000030583 synonymous SNV ENSMUST00000085809:c.C108A:p.P36P 7qB1 NA NA chr7 30185754 CATxGGA G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 DBSNP COVERED 0.923143 0.934492 0.987855 78 0 0 12.133104 0.130435 0.02 -0.40343 40 6 1174 170 60 60 0 0 GG 6.918656 23 0 651 0 KEEP - Sipa1l3 NO AA_2 chr7 30346730 30346730 T C intergenic "Sipa1l3(dist=56251),Catsperg2(dist=135508)" NA NA exonic 4930432E11Rik nonsynonymous SNV uc009gbx.1:c.T1163C:p.I388T exonic ENSMUSG00000046958 nonsynonymous SNV ENSMUST00000053635:c.T1163C:p.I388T 7qB1 NA NA chr7 30346730 GCAxTGT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 103 0 0 54.286867 0.454545 0.02 -0.38554 24 20 659 579 60 60 0 0 TT 13.834171 46 0 1250 0 KEEP + Sipa1l3 NO AA_2 chr7 31086902 31086902 C G exonic Clip3 nonsynonymous SNV NM_001081114:c.C956G:p.A319G exonic Clip3 nonsynonymous SNV uc009gea.1:c.C956G:p.A319G exonic ENSMUSG00000013921 nonsynonymous SNV ENSMUST00000014065:c.C956G:p.A319G 7qB1 NA NA chr7 31086902 TCGxCAG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 275 2 0 22.816915 0.114583 0.02 0.951604 85 11 2486 324 60 60 0 0 CC 41.733655 139 0 3764 0 KEEP + Clip3 NO AA_2 chr7 3935436 3935436 T G intergenic "Lilra6(dist=68333),Lair1(dist=23239)" NA NA downstream AK006659 NA NA ncRNA_exonic ENSMUSG00000083344 NA NA 7qA1 NA NA chr7 3935436 CCCxGAC T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 143 5 0 41.087998 0.444444 0.02 -0.315697 20 16 589 442 60 60 0 0 TT 25.867083 86 0 2388 0 KEEP NA Lilra6 NO AA_2 chr7 4463850 4463850 A T intronic Tnnt1 NA NA intronic Tnnt1 NA NA intronic ENSMUSG00000064179 NA NA 7qA1 NA NA chr7 4463850 CCCxCCC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 142 2 0 44.310716 0.414634 0.02 -0.359309 24 17 676 483 60 60 0 0 AA 19.694725 69 1 1803 9 KEEP - Tnnt1 YES AA_2 chr7 4709811 4709811 T C exonic Fam71e2 synonymous SNV NM_172895:c.A1503G:p.A501A exonic Fam71e2 synonymous SNV uc012ewx.1:c.A1503G:p.A501A exonic ENSMUSG00000049952 synonymous SNV ENSMUST00000068750:c.A1182G:p.A394A 7qA1 NA NA chr7 4709811 ATGxGCA T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 91 0 0 43.896018 0.53125 0.02 -0.280573 15 17 425 454 60 60 0 0 TT 15.034913 50 0 1336 0 KEEP - Fam71e2 NO AA_2 chr7 48942572 48942572 T A ncRNA_exonic Vmn2r-ps54 NA NA ncRNA_exonic Gprc2a-rs5 NA NA ncRNA_exonic ENSMUSG00000074164 NA NA 7qB3 "Score=0.90254;Name=No.101196,chr7:49390691" NA chr7 48942572 TGGxAGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 273 0 0 122.326111 0.5375 0.02 1.083183 37 43 1029 1258 60 60 0 0 TT 48.713521 162 0 4321 0 KEEP + Vmn2r-ps54 YES AA_2 chr7 50914360 50914360 T A exonic Siglece nonsynonymous SNV NM_031181:c.A749T:p.Y250F exonic Siglece nonsynonymous SNV uc009gng.1:c.A749T:p.Y250F exonic ENSMUSG00000030474 nonsynonymous SNV ENSMUST00000032667:c.A749T:p.Y250F 7qB4 NA NA chr7 50914360 TGAxAGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 80 0 0 33.709479 0.521739 0.02 -0.201704 11 12 308 349 60 60 0 0 TT 12.918141 43 0 1124 0 KEEP - Siglece YES AA_2 chr7 51097777 51097777 A C intronic Klk5 NA NA intronic Klk5 NA NA intronic ENSMUSG00000074155 NA NA 7qB4 NA NA chr7 51097777 CTAxGTG A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 45 0 0 26.365705 0.625 0.02 -0.140281 6 10 181 262 60 60 0 0 AA 6.31697 21 0 592 0 KEEP + Klk5 NO AA_2 chr7 51777452 51777452 T A exonic Mybpc2 synonymous SNV NM_146189:c.A231T:p.P77P exonic Mybpc2 synonymous SNV uc009gpv.2:c.A231T:p.P77P exonic ENSMUSG00000038670 synonymous SNV ENSMUST00000064089:c.A231T:p.P77P 7qB4 NA NA chr7 51777452 GCCxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 154 0 0 48.68761 0.404255 0.02 -0.41215 28 19 819 534 60 60 0 0 TT 23.756008 79 0 2161 0 KEEP - Mybpc2 YES AA_2 chr7 51836549 51836549 T A intronic Napsa NA NA intronic Napsa NA NA ncRNA_exonic ENSMUSG00000087560 NA NA 7qB4 NA NA chr7 51836549 TGTxCAA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999998 59 0 0 39.668502 0.666667 0.02 -0.184153 7 14 202 388 60 60 0 0 TT 10.227013 34 0 950 0 KEEP + Napsa YES AA_2 chr7 52160106 52160106 T A exonic Ap2a1 synonymous SNV NM_001077264:c.A1470T:p.P490P exonic Ap2a1 synonymous SNV uc009grv.1:c.A1470T:p.P490P exonic ENSMUSG00000060279 synonymous SNV ENSMUST00000085399:c.A1470T:p.P490P 7qB4 NA NA chr7 52160106 GGCxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 334 0 0 119.110745 0.467391 0.02 1.085557 49 43 1416 1262 60 60 0 0 TT 55.016535 183 0 5003 0 KEEP - Ap2a1 YES AA_2 chr7 52402699 52402699 T A intronic Aldh16a1 NA NA intronic Aldh16a1 NA NA intronic ENSMUSG00000007833 NA NA 7qB4 NA NA chr7 52402699 CCAxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 87 0 0 42.023992 0.5 0.02 -0.263098 15 15 424 439 60 60 0 0 TT 13.832046 46 0 1229 0 KEEP - Aldh16a1 YES AA_2 chr7 66936446 66936446 T A intergenic "Ipw(dist=2198),Snord116l2(dist=2512)" NA NA intergenic "Ipw(dist=2198),Snord116(dist=2512)" NA NA ncRNA_exonic ENSMUSG00000075979 NA NA 7qC "Score=0.95523;Name=No.101420,chr7:67007294" NA chr7 66936446 CAGxGGC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 404 12 28 75.655523 0.473684 0.02 1.249795 30 27 847 799 57 50 0 0 TT 80.874841 269 0 7167 0 KEEP NA Ipw YES AA_2 chr7 86498890 86498890 G T exonic Abhd2 nonsynonymous SNV NM_018811:c.G830T:p.G277V exonic Abhd2 nonsynonymous SNV uc009hyc.1:c.G830T:p.G277V exonic ENSMUSG00000039202 nonsynonymous SNV ENSMUST00000037315:c.G830T:p.G277V 7qD3 NA NA chr7 86498890 TTGxAGA G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 49 0 0 20.909805 0.470588 0.02 -0.149088 9 8 267 222 60 60 0 0 GG 7.519734 25 0 702 0 KEEP + Abhd2 NO AA_2 chr7 92886380 92886380 T A exonic Vmn2r72 stopgain SNV NM_001105185:c.A2485T:p.K829X exonic Vmn2r72-ps stopgain SNV uc012fom.1:c.A2485T:p.K829X exonic ENSMUSG00000051877 stopgain SNV ENSMUST00000063425:c.A2485T:p.K829X 7qD3 "Score=0.909935;Name=No.101506,chr7:92362377" NA chr7 92886380 ATTxAGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 129 0 0 26.346599 0.434783 0.02 -0.201286 13 10 356 284 60 60 0 0 TT 27.965242 93 0 2532 0 KEEP - Vmn2r72 YES AA_2 chr7 93106046 93106046 G T exonic Vmn2r74 nonsynonymous SNV NM_001105187:c.C601A:p.H201N exonic Vmn2r74 nonsynonymous SNV uc012foo.1:c.C601A:p.H201N exonic ENSMUSG00000090774 nonsynonymous SNV ENSMUST00000166355:c.C601A:p.H201N 7qD3 NA NA chr7 93106046 AATxAAC G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 127 0 0 12.232606 0.130435 0.02 -0.403452 40 6 1194 171 60 60 0 0 GG 18.952587 63 0 1813 0 KEEP - Vmn2r74 NO AA_2 chr7 93764505 93764505 A C exonic Olfr294 nonsynonymous SNV NM_001011750:c.T649G:p.F217V exonic Olfr294 nonsynonymous SNV uc009ife.1:c.T649G:p.F217V exonic ENSMUSG00000062042 nonsynonymous SNV ENSMUST00000078588:c.T649G:p.F217V 7qD3 NA NA chr7 93764505 AAAxGTA A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 92 0 0 12.453068 0.189189 0.02 -0.324431 30 7 887 169 60 60 0 0 AA 13.536008 45 0 1262 0 KEEP - Olfr294 NO AA_2 chr8 107397057 107397057 T G ncRNA_intronic Ces2d-ps NA NA ncRNA_intronic Ces2 NA NA intronic ENSMUSG00000031884 NA NA 8qD3 "Score=0.992565;Name=No.104259,chr8:107375962" NA chr8 107397057 GACxTTG T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 178 0 79 8.993805 0.138889 0.02 -0.324477 31 5 908 129 22 22 0 0 TT 22.552315 75 0 2091 0 KEEP + Ces2d-ps NO AA_2 chr8 110041957 110041957 C G exonic Wwp2 nonsynonymous SNV NM_025830:c.C860G:p.S287C exonic Wwp2 nonsynonymous SNV uc009nht.1:c.C722G:p.S241C exonic ENSMUSG00000031930 nonsynonymous SNV ENSMUST00000034407:c.C722G:p.S241C 8qD3 NA NA chr8 110041957 CTTxCGG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 145 0 0 12.69152 0.115385 0.02 1.436102 46 6 1370 179 60 60 0 0 CC 21.046543 70 0 1931 0 KEEP + Wwp2 NO AA_2 chr8 112147517 112147517 T G exonic Pkd1l3 nonsynonymous SNV NM_001039700:c.T1093G:p.S365A exonic Pkd1l3 nonsynonymous SNV uc009nit.1:c.T1093G:p.S365A exonic ENSMUSG00000048827 nonsynonymous SNV ENSMUST00000057344:c.T1093G:p.S365A 8qD3 NA NA chr8 112147517 CCTxCAT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 195 0 0 9.103854 0.085366 0.02 0.977431 75 7 2057 160 60 60 0 0 TT 26.111799 91 1 2409 10 KEEP + Pkd1l3 NO AA_2 chr8 11433808 11433808 T A exonic Col4a2 synonymous SNV NM_009932:c.T2727A:p.G909G exonic Col4a2 synonymous SNV uc009kvc.2:c.T2727A:p.G909G exonic ENSMUSG00000031503 synonymous SNV ENSMUST00000033899:c.T2727A:p.G909G 8qA1.1 NA NA chr8 11433808 TGGxATC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 92 0 0 62.02545 0.45098 0.02 1.346294 28 23 777 663 60 60 0 0 TT 11.122604 37 0 959 0 KEEP + Col4a2 YES AA_2 chr8 115281439 115281439 T G exonic Cntnap4 nonsynonymous SNV NM_130457:c.T1223G:p.L408R exonic Cntnap4 nonsynonymous SNV uc009nnj.1:c.T1223G:p.L408R exonic ENSMUSG00000031772 nonsynonymous SNV ENSMUST00000034225:c.T1223G:p.L408R 8qE1 NA NA chr8 115281439 GACxTCT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 119 0 0 10.705604 0.12 0.02 -0.438484 44 6 1277 158 60 60 0 0 TT 15.303836 51 0 1375 0 KEEP + Cntnap4 NO AA_2 chr8 116179361 116179361 C T exonic Syce1l synonymous SNV NM_001048145:c.C741T:p.C247C exonic Syce1l synonymous SNV uc012glc.1:c.C678T:p.C226C exonic ENSMUSG00000033409 synonymous SNV ENSMUST00000098387:c.C678T:p.C226C 8qE1 NA NA chr8 116179361 CTGxTAA C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 125 0 0 26.569607 0.297297 0.02 -0.324508 26 11 780 311 60 60 0 0 CC 19.533754 65 0 1844 0 KEEP + Syce1l NO AA_2 chr8 16028747 16028747 T A exonic Csmd1 nonsynonymous SNV NM_053171:c.A5959T:p.S1987C exonic Csmd1 nonsynonymous SNV uc009kzp.1:c.A5959T:p.S1987C exonic ENSMUSG00000060924 nonsynonymous SNV ENSMUST00000110789:c.A4864T:p.S1622C 8qA1.1 NA NA chr8 16028747 GGCxCAG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.229028 0.229173 0.999366 38 0 0 12.539163 0.333333 0.02 -0.131543 10 5 287 143 60 60 0 0 TT 5.113734 17 0 479 0 KEEP - Csmd1 YES AA_2 chr8 3604874 3604874 G T exonic Camsap3 nonsynonymous SNV NM_001163749:c.G2465T:p.R822L exonic 2310057J16Rik nonsynonymous SNV uc009krx.2:c.G1436T:p.R479L exonic ENSMUSG00000044433 nonsynonymous SNV ENSMUST00000057028:c.G2462T:p.R821L 8qA1.1 NA NA chr8 3604874 CTCxCTC G T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 75 0 0 8.576083 0.125 0.02 -0.280572 28 4 771 119 60 60 0 0 GG 11.117768 37 0 941 0 KEEP + Camsap3 NO AA_2 chr8 3610603 3610603 C G exonic Xab2 nonsynonymous SNV NM_026156:c.G2338C:p.A780P exonic Xab2 nonsynonymous SNV uc009kry.1:c.G2338C:p.A780P exonic ENSMUSG00000019470 nonsynonymous SNV ENSMUST00000019614:c.G2338C:p.A780P 8qA1.1 NA NA chr8 3610603 CTGxCAG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 116 0 0 22.157508 0.163934 0.02 1.232219 51 10 1506 292 60 60 0 0 CC 12.932742 43 0 1185 0 KEEP - Xab2 NO AA_2 chr8 3690345 3690345 T A exonic Fcer2a nonsynonymous SNV NM_001253739:c.A1T:p.M1L exonic Fcer2a nonsynonymous SNV uc009ksl.1:c.A1T:p.M1L exonic ENSMUSG00000005540 nonsynonymous SNV ENSMUST00000111034:c.A1T:p.M1L 8qA1.1 NA NA chr8 3690345 CCAxCAA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 223 0 0 120.620646 0.473684 0.02 0.8621 50 45 1444 1277 60 60 0 0 TT 27.34583 91 0 2481 0 KEEP - Fcer2a YES AA_2 chr8 41765552 41765552 T A exonic Adam24 nonsynonymous SNV NM_010086:c.T704A:p.V235E exonic Adam24 nonsynonymous SNV uc009lnb.1:c.T704A:p.V235E exonic ENSMUSG00000046723 nonsynonymous SNV ENSMUST00000051614:c.T704A:p.V235E 8qA4 NA NA chr8 41765552 ATGxATT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.353932 0.353947 0.999957 54 0 0 21.600422 0.421053 0.02 -0.166621 11 8 305 234 60 60 0 0 TT 7.811015 26 0 679 0 KEEP + Adam24 YES AA_2 chr8 41882516 41882516 T C UTR3 Adam20 NA NA UTR3 4930529F22Rik NA NA UTR3 ENSMUSG00000046282 NA NA 8qA4 NA NA chr8 41882516 TCAxGCA T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612381 0.612407 0.999957 57 0 0 35.952849 0.518519 0.02 -0.236742 13 14 370 374 60 60 0 0 TT 7.819145 26 0 702 0 KEEP + Adam20 NO AA_2 chr8 48279353 48279353 T A exonic Stox2 nonsynonymous SNV NM_001114311:c.A425T:p.Q142L exonic Stox2 nonsynonymous SNV uc009lqv.2:c.A239T:p.Q80L exonic ENSMUSG00000038143 nonsynonymous SNV ENSMUST00000079195:c.A425T:p.Q142L 8qB1.1 NA NA chr8 48279353 GTCxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 70 0 0 25.680722 0.30303 0.02 -0.289421 23 10 668 297 60 60 0 0 TT 9.323716 31 0 853 0 KEEP - Stox2 YES AA_2 chr8 67228529 67228529 A C exonic Klhl2 synonymous SNV NM_178633:c.T1431G:p.T477T exonic Klhl2 synonymous SNV uc009luz.1:c.T1431G:p.T477T exonic ENSMUSG00000031605 synonymous SNV ENSMUST00000034017:c.T1431G:p.T477T 8qB3.1 NA NA chr8 67228529 GTAxGTC A C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 63 0 0 12.702522 0.25 0.02 -0.210463 18 6 526 157 60 60 0 0 AA 9.023292 30 0 834 0 KEEP - Klhl2 NO AA_2 chr8 69228332 69228332 T G exonic Npy1r synonymous SNV NM_010934:c.T504G:p.S168S exonic Npy1r synonymous SNV uc009lvt.2:c.T504G:p.S168S exonic ENSMUSG00000036437 synonymous SNV ENSMUST00000039303:c.T504G:p.S168S 8qB3.3 NA NA chr8 69228332 TTCxTCT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 111 0 0 13.175006 0.159091 0.02 -0.385859 37 7 1083 182 60 60 0 0 TT 16.542959 55 0 1531 0 KEEP + Npy1r NO AA_2 chr8 75199142 75199142 T A exonic Nwd1 synonymous SNV NM_176940:c.T2391A:p.A797A exonic Nwd1 synonymous SNV uc009mgn.2:c.T1911A:p.A637A exonic ENSMUSG00000048148 synonymous SNV ENSMUST00000093427:c.T2391A:p.A797A 8qB3.3 NA NA chr8 75199142 TGCxGTG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 109 0 0 81.120866 0.571429 0.02 -0.429752 21 28 616 823 60 60 0 0 TT 13.835486 46 0 1270 0 KEEP + Nwd1 YES AA_2 chr8 79433682 79433682 T A exonic Nr3c2 synonymous SNV NM_001083906:c.T1512A:p.P504P exonic Nr3c2 synonymous SNV uc009mhl.1:c.T1512A:p.P504P exonic ENSMUSG00000031618 synonymous SNV ENSMUST00000034031:c.T1512A:p.P504P 8qC1 NA NA chr8 79433682 CCCxGAA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423426 0.423478 0.999879 45 0 0 13.302659 0.285714 0.02 -0.183972 15 6 430 159 60 60 0 0 TT 6.61629 22 0 601 0 KEEP + Nr3c2 YES AA_2 chr8 83137941 83137941 T A exonic Frem3 nonsynonymous SNV NM_001167898:c.T2963A:p.L988Q exonic Frem3 nonsynonymous SNV uc012ggm.1:c.T2963A:p.L988Q exonic ENSMUSG00000042353 nonsynonymous SNV ENSMUST00000039695:c.T2963A:p.L988Q 8qC2 NA NA chr8 83137941 TTCxAGT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999997 81 0 0 67.203661 0.510638 0.02 -0.412185 23 24 654 699 60 60 0 0 TT 9.022551 30 0 820 0 KEEP + Frem3 YES AA_2 chr8 91554376 91554376 T A exonic Sall1 nonsynonymous SNV NM_021390:c.A2998T:p.T1000S exonic Sall1 nonsynonymous SNV uc009msa.2:c.A2998T:p.T1000S exonic ENSMUSG00000031665 nonsynonymous SNV ENSMUST00000034090:c.A2998T:p.T1000S 8qC3 NA NA chr8 91554376 CAGxGTT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 91 0 0 56.303382 0.487805 0.02 -0.359572 21 20 596 591 60 60 0 0 TT 12.627282 42 0 1110 0 KEEP - Sall1 YES AA_2 chr8 95736179 95736179 T A intronic Ces1e NA NA intronic Ces1e NA NA intronic ENSMUSG00000061959 NA NA 8qC5 NA NA chr8 95736179 TAAxCCT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 84 0 0 12.96859 0.157895 0.02 -0.333247 32 6 911 173 60 60 0 0 TT 10.524077 35 0 944 0 KEEP - Ces1e YES AA_2 chr8 97011590 97011590 A G exonic Nlrc5 nonsynonymous SNV NM_001033207:c.A2756G:p.Y919C exonic Nlrc5 nonsynonymous SNV uc009mwj.2:c.A2060G:p.Y687C ncRNA_exonic ENSMUSG00000074151 NA NA 8qC5 NA NA chr8 97011590 CCTxTGT A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 107 2 0 24.536873 0.25641 0.02 -0.341684 29 10 791 294 60 60 0 0 AA 14.133301 47 0 1251 0 KEEP + Nlrc5 NO AA_2 chr9 103042665 103042665 A T intronic Rab6b NA NA intronic Rab6b NA NA intronic ENSMUSG00000032549 NA NA 9qF1 NA NA chr9 103042665 GCCxTAG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 DBSNP COVERED 0.865739 0.865745 0.999992 96 2 0 36.622081 0.358974 0.02 -0.342028 25 14 717 410 60 60 0 0 AA 12.02978 40 0 1086 0 KEEP + Rab6b YES AA_2 chr9 105963840 105963840 T C exonic Col6a4 nonsynonymous SNV NM_026763:c.A4009G:p.R1337G exonic Col6a4 nonsynonymous SNV uc012gzq.1:c.A4009G:p.R1337G exonic ENSMUSG00000032572 nonsynonymous SNV ENSMUST00000035186:c.A4009G:p.R1337G 9qF1 NA NA chr9 105963840 TTCxCCT T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053947 0.054137 0.99649 28 0 0 11.199479 0.5 0.02 -0.070165 4 4 119 117 60 60 0 0 TT 4.512109 15 0 423 0 KEEP - Col6a4 NO AA_2 chr9 106455263 106455263 A G intronic Iqcf3 NA NA intronic Iqcf3 NA NA intronic ENSMUSG00000023577 NA NA 9qF1 NA NA chr9 106455263 TGAxGAG A G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.289832 0.292001 0.99257 26 0 0 25.087083 0.529412 0.02 -0.149095 8 9 237 259 60 60 0 0 AA 2.406342 8 0 223 0 KEEP - Iqcf3 NO AA_2 chr9 106762721 106762721 A T exonic Vprbp nonsynonymous SNV NM_001015507:c.A3444T:p.L1148F exonic Vprbp nonsynonymous SNV uc009rkp.2:c.A3444T:p.L1148F exonic ENSMUSG00000040325 nonsynonymous SNV ENSMUST00000055009:c.A3444T:p.L1148F 9qF1 NA NA chr9 106762721 CTTxCTT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 156 0 0 93.014052 0.615385 0.02 1.337511 20 32 557 928 60 60 0 0 AA 20.747358 69 0 1839 0 KEEP + Vprbp YES AA_2 chr9 107882092 107882092 A T splicing Uba7(NM_023738:exon17:c.2014-2A>T) NA NA splicing "Uba7(uc012han.1:exon16:c.1903-2A>T,uc009rno.1:exon17:c.2014-2A>T,uc009rnp.1:exon17:c.859-2A>T,uc012hao.1:exon15:c.1513-2A>T)" NA NA splicing "ENSMUSG00000032596(ENSMUST00000075082:exon16:c.1903-2A>T,ENSMUST00000035216:exon17:c.2014-2A>T)" NA NA 9qF2 NA NA chr9 107882092 CATxGGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 118 0 0 19.602455 0.157895 0.02 1.293627 48 9 1400 261 60 60 0 0 AA 14.13566 47 0 1288 0 KEEP + Uba7 YES AA_2 chr9 108585478 108585478 A T exonic Slc25a20 nonsynonymous SNV NM_020520:c.A817T:p.M273L exonic Slc25a20 nonsynonymous SNV uc009rqs.1:c.A817T:p.M273L exonic ENSMUSG00000032602 nonsynonymous SNV ENSMUST00000035222:c.A817T:p.M273L 9qF2 NA NA chr9 108585478 GTCxTGA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.717285 0.717315 0.999957 68 0 0 48.238955 0.548387 0.02 -0.271867 14 17 398 494 60 60 0 0 AA 7.806925 26 0 683 0 KEEP + Slc25a20 YES AA_2 chr9 108735109 108735109 G C exonic Celsr3 nonsynonymous SNV NM_080437:c.G4457C:p.G1486A exonic Celsr3 nonsynonymous SNV uc009rrb.1:c.G4457C:p.G1486A exonic ENSMUSG00000023473 nonsynonymous SNV ENSMUST00000024238:c.G4457C:p.G1486A 9qF2 NA NA chr9 108735109 GCGxCTT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 94 0 0 27.970394 0.297297 0.02 -0.342037 26 11 759 325 60 60 0 0 GG 13.507355 45 0 1211 0 KEEP + Celsr3 NO AA_2 chr9 108736941 108736941 C T exonic Celsr3 nonsynonymous SNV NM_080437:c.C5017T:p.P1673S exonic Celsr3 nonsynonymous SNV uc009rrb.1:c.C5017T:p.P1673S exonic ENSMUSG00000023473 nonsynonymous SNV ENSMUST00000024238:c.C5017T:p.P1673S 9qF2 NA NA chr9 108736941 TTCxCTG C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 236 4 0 25.412195 0.122449 0.02 0.933995 86 12 2564 355 60 60 0 0 CC 33.080286 110 0 3044 0 KEEP + Celsr3 NO AA_2 chr9 109286492 109286492 G C exonic Fbxw22 synonymous SNV NM_001014395:c.C900G:p.T300T exonic Fbxw22 synonymous SNV uc012hbd.1:c.C483G:p.T161T exonic ENSMUSG00000070324 synonymous SNV ENSMUST00000080626:c.C900G:p.T300T 9qF2 "Score=0.91713;Name=No.105620,chr9:109195425" NA chr9 109286492 CAGxGTT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 116 0 0 31.108575 0.282609 0.02 -0.412194 33 13 974 368 60 60 0 0 GG 18.649023 62 0 1739 0 KEEP - Fbxw22 NO AA_2 chr9 110042096 110042096 A T exonic Smarcc1 nonsynonymous SNV NM_009211:c.A356T:p.H119L exonic Smarcc1 nonsynonymous SNV uc009rtm.1:c.A356T:p.H119L exonic ENSMUSG00000032481 nonsynonymous SNV ENSMUST00000035057:c.A356T:p.H119L 9qF2 NA NA chr9 110042096 GTCxCAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 117 2 0 16.734451 0.205882 0.02 -0.298176 27 7 768 209 60 60 0 0 AA 17.139431 57 0 1540 0 KEEP + Smarcc1 YES AA_2 chr9 110891975 110891975 C T exonic Rtp3 synonymous SNV NM_153100:c.G141A:p.T47T exonic Rtp3 synonymous SNV uc012hbo.1:c.G141A:p.T47T exonic ENSMUSG00000066319 synonymous SNV ENSMUST00000084922:c.G141A:p.T47T 9qF3 NA NA chr9 110891975 TTGxGTC C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 70 1 0 37.557643 0.518519 0.02 -0.236736 13 14 351 390 60 60 0 0 CC 10.824043 36 0 954 0 KEEP - Rtp3 NO AA_2 chr9 119047340 119047340 G C intronic Dlec1 NA NA intronic Dlec1 NA NA intronic ENSMUSG00000038060 NA NA 9qF3 NA NA chr9 119047340 CTAxTCT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.58286 0.58293 0.999879 53 0 0 30.555452 0.423077 0.02 -0.228023 15 11 430 330 60 60 0 0 GG 6.617011 22 0 609 0 KEEP + Dlec1 NO AA_2 chr9 121604754 121604754 G C exonic Sec22c nonsynonymous SNV NM_001164562:c.C80G:p.A27G exonic Sec22c nonsynonymous SNV uc009sdn.2:c.C80G:p.A27G exonic ENSMUSG00000061536 nonsynonymous SNV ENSMUST00000078547:c.C80G:p.A27G 9qF4 NA NA chr9 121604754 TGGxCGT G C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 95 0 0 7.399016 0.081633 0.02 -0.429748 45 4 1324 115 60 60 0 0 GG 11.43 38 0 1059 0 KEEP - Sec22c NO AA_2 chr9 122046221 122046221 A T exonic Snrk stopgain SNV NM_001164572:c.A91T:p.K31X exonic Snrk stopgain SNV uc009sep.2:c.A91T:p.K31X exonic ENSMUSG00000038145 stopgain SNV ENSMUST00000120173:c.A91T:p.K31X 9qF4 NA NA chr9 122046221 GTCxAAC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139814 0.139832 0.999869 36 0 0 13.245288 0.416667 0.02 -0.105242 7 5 204 144 60 60 0 0 AA 6.290266 21 0 563 0 KEEP + Snrk YES AA_2 chr9 13510069 13510069 A T exonic Maml2 nonsynonymous SNV NM_173776:c.A266T:p.Q89L exonic Maml2 nonsynonymous SNV uc009odw.2:c.A2036T:p.Q679L exonic ENSMUSG00000031925 nonsynonymous SNV ENSMUST00000034401:c.A266T:p.Q89L 9qA1 NA NA chr9 13510069 ACCxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 165 2 0 93.27471 0.492537 0.02 1.304559 34 33 993 977 60 60 0 0 AA 22.558788 75 0 2083 0 KEEP + Maml2 YES AA_2 chr9 14110707 14110707 A T exonic Sesn3 nonsynonymous SNV NM_030261:c.A143T:p.E48V exonic Sesn3 nonsynonymous SNV uc009oej.1:c.A143T:p.E48V exonic ENSMUSG00000032009 nonsynonymous SNV ENSMUST00000034507:c.A143T:p.E48V 9qA1 NA NA chr9 14110707 AGGxAGT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 108 2 0 33.012919 0.40625 0.02 -0.280633 19 13 553 362 60 60 0 0 AA 17.718714 59 0 1614 0 KEEP + Sesn3 YES AA_2 chr9 15415021 15415021 T A exonic Ccdc67 nonsynonymous SNV NM_181816:c.A291T:p.K97N exonic Ccdc67 nonsynonymous SNV uc009ogd.1:c.A291T:p.K97N exonic ENSMUSG00000039977 nonsynonymous SNV ENSMUST00000115592:c.A291T:p.K97N 9qA2 NA NA chr9 15415021 AGCxTTT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 97 0 0 54.796582 0.5 0.02 -0.350808 20 20 589 573 60 60 0 0 TT 12.633905 42 0 1183 0 KEEP - Ccdc67 YES AA_2 chr9 37705106 37705106 T A exonic Olfr145 nonsynonymous SNV NM_146313:c.T116A:p.V39E exonic Olfr145 nonsynonymous SNV uc009ovp.1:c.T116A:p.V39E exonic ENSMUSG00000066748 nonsynonymous SNV ENSMUST00000086062:c.T116A:p.V39E 9qA4 NA NA chr9 37705106 TGGxGGG T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 375 2 0 135.097964 0.494845 0.02 1.041487 49 48 1394 1414 60 60 0 0 TT 62.701631 212 1 5694 9 KEEP + Olfr145 YES AA_2 chr9 45153017 45153017 C T exonic Tmprss13 stopgain SNV NM_001013373:c.C1345T:p.R449X exonic Tmprss13 stopgain SNV uc009pfr.1:c.C1345T:p.R449X exonic ENSMUSG00000037129 stopgain SNV ENSMUST00000034597:c.C1345T:p.R449X 9qA5.2 NA NA chr9 45153017 CTCxGAG C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 125 0 0 71.780144 0.448276 0.02 1.284916 32 26 888 767 60 60 0 0 CC 13.526646 45 0 1177 0 KEEP + Tmprss13 NO AA_2 chr9 50884472 50884472 G A intronic Layn NA NA intronic Layn NA NA intronic ENSMUSG00000060594 NA NA 9qA5.3 NA NA chr9 50884472 AGGxAAG G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139815 0.139832 0.999879 45 0 0 7.30116 0.25 0.02 -0.105251 9 3 271 88 60 60 0 0 GG 6.617959 22 0 624 0 KEEP - Layn NO AA_2 chr9 65420922 65420922 C T exonic Plekho2 synonymous SNV NM_153119:c.G27A:p.G9G exonic Plekho2 synonymous SNV uc009qdn.1:c.G27A:p.G9G exonic ENSMUSG00000050721 synonymous SNV ENSMUST00000068944:c.G27A:p.G9G 9qC NA NA chr9 65420922 GCTxCCC C T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 135 0 0 9.573003 0.078125 0.02 1.232204 59 5 1762 148 60 60 0 0 CC 15.943255 53 0 1504 0 KEEP - Plekho2 NO AA_2 chr9 70700966 70700966 A T intronic Lipc NA NA intronic Lipc NA NA exonic ENSMUSG00000078305 nonsynonymous SNV ENSMUST00000105101:c.A584T:p.E195V 9qD "Score=0.982468;Name=No.60831,chr15:82946275" NA chr9 70700966 AGGxGGG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 99 2 0 65.539463 0.638889 0.02 -0.315704 13 23 377 648 60 60 0 0 AA 13.821246 46 0 1238 0 KEEP - Lipc YES AA_2 chr9 7673071 7673071 T A exonic Mmp20 nonsynonymous SNV NM_013903:c.T1357A:p.Y453N exonic Mmp20 nonsynonymous SNV uc009ocu.1:c.T1357A:p.Y453N exonic ENSMUSG00000018620 nonsynonymous SNV ENSMUST00000034487:c.T1357A:p.Y453N 9qA1 NA NA chr9 7673071 ATTxACT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 53 0 0 9.201793 0.25 0.02 -0.140314 12 4 343 112 60 60 0 0 TT 9.624937 32 0 885 0 KEEP + Mmp20 YES AA_2 chr9 87602656 87602656 T A exonic Tbx18 nonsynonymous SNV NM_023814:c.A1063T:p.R355W exonic Tbx18 nonsynonymous SNV uc009qyh.2:c.A1063T:p.R355W exonic ENSMUSG00000032419 nonsynonymous SNV ENSMUST00000034991:c.A1063T:p.R355W 9qE3.1 NA NA chr9 87602656 GCCxCCA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 68 0 0 33.336545 0.666667 0.02 -0.157782 6 12 174 326 60 60 0 0 TT 11.429054 38 0 1056 0 KEEP - Tbx18 YES AA_2 chr9 89958971 89958971 T C intronic Ctsh NA NA intronic Ctsh NA NA intronic ENSMUSG00000032359 NA NA 9qE3.1 NA NA chr9 89958971 AAGxACG T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 0.999999 86 0 0 56.205085 0.512821 0.02 -0.342021 19 20 533 584 60 60 0 0 TT 10.825504 36 0 959 0 KEEP + Ctsh NO AA_2 chr9 99236442 99236442 T A intronic Esyt3 NA NA intronic Esyt3 NA NA intronic ENSMUSG00000037681 NA NA 9qE3.3 NA NA chr9 99236442 GACxGCC T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.760787 0.760887 0.999869 61 0 0 47.679917 0.515152 0.02 -0.289427 16 17 477 495 60 60 0 0 TT 6.316863 21 0 590 0 KEEP - Esyt3 YES AA_2 chr9 99540296 99540296 C G exonic Dzip1l nonsynonymous SNV NM_028258:c.C565G:p.H189D exonic Dzip1l nonsynonymous SNV uc009rem.1:c.C565G:p.H189D exonic ENSMUSG00000037784 nonsynonymous SNV ENSMUST00000078367:c.C565G:p.H189D 9qE3.3 NA NA chr9 99540296 AGAxATG C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 196 0 0 52.229282 0.355932 0.02 1.374844 38 21 1130 589 60 60 0 0 CC 34.594409 115 0 3284 0 KEEP + Dzip1l NO AA_2 chr9 99540297 99540297 A T exonic Dzip1l nonsynonymous SNV NM_028258:c.A566T:p.H189L exonic Dzip1l nonsynonymous SNV uc009rem.1:c.A566T:p.H189L exonic ENSMUSG00000037784 nonsynonymous SNV ENSMUST00000078367:c.A566T:p.H189L 9qE3.3 NA NA chr9 99540297 GACxTGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 195 0 0 53.637319 0.355932 0.02 1.276126 38 21 1072 603 60 60 0 0 AA 34.280614 114 0 3053 0 KEEP + Dzip1l YES AA_2 chrM 14538 14538 G A intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic Cytb NA NA exonic ENSMUSG00000064370 unknown UNKNOWN NA NA NA chrM 14538 TACxTCC G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1475 9 0 121.079462 0.138824 0.02 9.828978 366 59 9345 1672 60 60 0 0 GG 297.254647 990 0 23967 0 KEEP + NONE NO AA_2 chrX 103438582 103438582 A T exonic Fnd3c2 nonsynonymous SNV NM_001033424:c.T1735A:p.S579T exonic Fnd3c2 nonsynonymous SNV uc009ubr.1:c.T1735A:p.S579T exonic ENSMUSG00000073012 nonsynonymous SNV ENSMUST00000091282:c.T1735A:p.S579T XqD "Score=0.951913;Name=No.113776,chrX:103461923" NA chrX 103438582 CAGxGCT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 207 2 7 143.889268 0.977778 0.02 -0.394633 1 44 30 1250 60 60 0 0 AA 36.357512 121 0 3336 0 KEEP - Fnd3c2 YES AA_2 chrX 121241416 121241416 T G exonic Vmn2r121 nonsynonymous SNV NM_001100616:c.A2515C:p.K839Q exonic Vmn2r121 nonsynonymous SNV uc009vfh.1:c.A874C:p.K292Q exonic ENSMUSG00000072049 nonsynonymous SNV ENSMUST00000096792:c.A2395C:p.K799Q XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121241416 TCTxTAT T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 261 12 15 23.514187 0.217391 0.02 1.144534 36 10 1041 292 60 43 0 0 TT 46.051087 163 1 4535 28 KEEP - Vmn2r121 NO AA_2 chrX 121246576 121246576 G A exonic Vmn2r121 synonymous SNV NM_001100616:c.C492T:p.F164F exonic Vmn2r121 synonymous SNV uc009uep.1:c.C492T:p.F164F exonic ENSMUSG00000072049 synonymous SNV ENSMUST00000071277:c.C492T:p.F164F XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121246576 AAAxAAA G A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 464 29 2 41.335801 0.2 0.02 2.552166 72 18 2134 523 60 60 0 0 GG 83.619529 278 0 7980 0 KEEP - Vmn2r121 NO AA_2 chrX 122593936 122593936 A T intergenic "Vmn2r121(dist=1344417),4932411N23Rik(dist=753058)" NA NA intergenic "Vmn2r121(dist=1344417),4932411N23Rik(dist=753058)" NA NA ncRNA_exonic ENSMUSG00000082034 NA NA XqE3 "Score=0.996824;Name=No.114193,chrX:121555702" NA chrX 122593936 CTAxGGC A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 258 4 3 152.276128 0.94 0.02 -0.438496 3 47 89 1348 30 53 0 0 AA 52.284669 174 0 4848 0 KEEP NA Vmn2r121 YES AA_2 chrX 132336019 132336019 A T exonic Gprasp1 synonymous SNV NM_001004359:c.A2421T:p.T807T exonic Gprasp1 synonymous SNV uc009uho.1:c.A2421T:p.T807T exonic ENSMUSG00000043384 synonymous SNV ENSMUST00000163986:c.A2421T:p.T807T XqF1 NA NA chrX 132336019 TACxGTT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 83 0 0 102.398339 1 0.02 -0.263114 0 30 0 881 0 60 0 0 AA 13.535645 45 0 1257 0 KEEP + Gprasp1 YES AA_2 chrX 138034327 138034327 T G exonic Col4a5 nonsynonymous SNV NM_001163155:c.T1271G:p.L424R exonic Col4a5 nonsynonymous SNV uc009ulo.2:c.T1271G:p.L424R exonic ENSMUSG00000031274 nonsynonymous SNV ENSMUST00000112931:c.T1271G:p.L424R XqF2 NA NA chrX 138034327 GACxTGA T G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 55 2 0 12.102519 0.25 0.02 -0.21045 18 6 528 151 60 60 0 0 TT 6.909012 23 0 630 0 KEEP + Col4a5 NO AA_2 chrX 138740575 138740575 T A UTR5 Kcne1l NA NA UTR5 Kcne1l NA NA UTR5 ENSMUSG00000090122 NA NA XqF2 NA NA chrX 138740575 TGTxGGA T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.999859 33 0 0 41.219583 1 0.02 -0.105247 0 12 0 355 0 60 0 0 TT 5.413048 18 0 487 0 KEEP - Kcne1l YES AA_2 chrX 140365472 140365472 T A intronic Dcx NA NA intronic Dcx NA NA intronic ENSMUSG00000031285 NA NA XqF2 NA NA chrX 140365472 CACxACT T A Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 74 0 0 16.73038 0.259259 0.02 -0.236794 20 7 584 201 60 60 0 0 TT 12.322844 41 0 1127 0 KEEP - Dcx YES AA_2 chrX 166414822 166414822 T C ncRNA_intronic G530011O06Rik NA NA ncRNA_intronic "Fxy,G530011O06Rik" NA NA ncRNA_intronic ENSMUSG00000072844 NA NA XqF5 NA NA chrX 166414822 AAAxTCA T C Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 85 0 0 12.270155 0.3125 0.02 -0.149079 11 5 308 142 60 60 0 0 TT 17.743169 59 0 1588 0 KEEP - G530011O06Rik NO AA_2 chrX 33673019 33673019 A T exonic Il13ra1 nonsynonymous SNV NM_133990:c.A422T:p.K141M exonic Il13ra1 nonsynonymous SNV uc009sxj.1:c.A422T:p.K141M exonic ENSMUSG00000017057 nonsynonymous SNV ENSMUST00000033418:c.A422T:p.K141M XqA3.3 NA NA chrX 33673019 TGAxGTG A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 58 0 0 60.28914 0.904762 0.02 -0.184165 2 19 58 541 60 60 0 0 AA 8.723103 29 0 812 0 KEEP + Il13ra1 YES AA_2 chrX 71581842 71581842 A T exonic Plxna3 nonsynonymous SNV NM_008883:c.A2693T:p.E898V exonic Plxna3 nonsynonymous SNV uc009too.1:c.A2693T:p.E898V exonic ENSMUSG00000031398 nonsynonymous SNV ENSMUST00000004326:c.A2693T:p.E898V XqA7.3 NA NA chrX 71581842 GTGxGAT A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 98 0 0 112.406073 0.945946 0.02 -0.32447 2 35 56 991 60 60 0 0 AA 16.543298 55 0 1532 0 KEEP + Plxna3 YES AA_2 chrX 71632913 71632913 C G intronic Fam3a NA NA intronic Fam3a NA NA intronic ENSMUSG00000031399 NA NA XqA7.3 NA NA chrX 71632913 TGGxCTT C G Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 94 0 0 22.338083 0.28125 0.02 -0.280651 23 9 676 263 60 60 0 0 CC 16.235544 54 0 1484 0 KEEP - Fam3a NO AA_2 chrX 98044479 98044479 A T exonic Tex11 nonsynonymous SNV NM_031384:c.T2432A:p.L811Q exonic Tex11 nonsynonymous SNV uc009tws.2:c.T2432A:p.L811Q exonic ENSMUSG00000009670 nonsynonymous SNV ENSMUST00000009814:c.T2432A:p.L811Q XqC3 NA NA chrX 98044479 ACCxGAA A T Ot7970_index28_CAAAAG_L007 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.99986 32 0 0 33.865825 1 0.02 -0.087703 0 10 0 291 0 60 0 0 AA 5.715203 19 0 533 0 KEEP - Tex11 YES AA_3 chr10 127005910 127005910 G T intronic Lrp1 NA NA intronic Lrp1 NA NA intronic ENSMUSG00000040249 NA NA 10qD3 NA NA chr10 127005910 CCTxTGC G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 107 0 0 59.739104 0.594595 0.02 -0.333129 15 22 409 601 60 60 0 0 GG 16.831592 56 0 1566 0 KEEP - Lrp1 NO AA_3 chr10 127551754 127551754 A T exonic Baz2a synonymous SNV NM_054078:c.A1500T:p.P500P exonic Baz2a synonymous SNV uc007hlh.1:c.A1509T:p.P503P exonic ENSMUSG00000040054 synonymous SNV ENSMUST00000045621:c.A1500T:p.P500P 10qD3 NA NA chr10 127551754 CCCxGCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 86 0 0 77.407507 0.84375 0.02 -0.280317 5 27 142 706 60 60 0 0 AA 13.534882 45 0 1248 0 KEEP + Baz2a YES AA_3 chr10 18503486 18503486 T A exonic Gm4922 synonymous SNV NM_177706:c.A1293T:p.T431T exonic Gm4922 synonymous SNV uc007emq.1:c.A1293T:p.T431T exonic ENSMUSG00000044624 synonymous SNV ENSMUST00000055107:c.A1293T:p.T431T 10qA3 NA NA chr10 18503486 TTCxGTA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 62 0 0 14.307252 0.285714 0.02 -0.184147 15 6 415 169 60 60 0 0 TT 11.125738 37 0 994 0 KEEP - Gm4922 YES AA_3 chr10 24551555 24551555 T A exonic Enpp3 nonsynonymous SNV NM_134005:c.A136T:p.R46W exonic Enpp3 nonsynonymous SNV uc007era.1:c.A136T:p.R46W exonic ENSMUSG00000019989 nonsynonymous SNV ENSMUST00000020169:c.A136T:p.R46W 10qA4 NA NA chr10 24551555 TCCxGAG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 54 0 0 25.006881 0.6 0.02 -0.131537 6 9 168 251 60 60 0 0 TT 9.023403 30 0 832 0 KEEP - Enpp3 YES AA_3 chr10 5314694 5314694 A T exonic Syne1 synonymous SNV NM_022027:c.A2469T:p.S823S exonic Syne1 synonymous SNV uc007egs.1:c.A2469T:p.S823S exonic ENSMUSG00000019769 synonymous SNV ENSMUST00000095899:c.A2469T:p.S823S 10qA1 NA NA chr10 5314694 ATCxTGG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 98 0 0 51.164096 0.809524 0.02 -0.184146 4 17 108 475 60 60 0 0 AA 18.04306 60 0 1613 0 KEEP + Syne1 YES AA_3 chr10 56108502 56108502 A G UTR3 Gja1 NA NA UTR3 Gja1 NA NA exonic ENSMUSG00000050953 nonsynonymous SNV ENSMUST00000163792:c.A1148G:p.N383S 10qB4 NA NA chr10 56108502 TAAxCAG A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 81 0 0 10.356603 0.142857 0.02 -0.306853 30 5 791 142 60 60 0 0 AA 7.750019 36 1 977 29 KEEP + Gja1 NO AA_3 chr10 77909725 77909725 T A exonic Pdxk nonsynonymous SNV NM_172134:c.A480T:p.R160S exonic Pdxk nonsynonymous SNV uc007fxu.2:c.A480T:p.R160S exonic ENSMUSG00000032788 nonsynonymous SNV ENSMUST00000041616:c.A480T:p.R160S 10qC1 NA NA chr10 77909725 TTTxCTG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 107 0 0 22.931995 0.255814 0.02 -0.377005 32 11 871 283 60 60 0 0 TT 15.339251 51 0 1410 0 KEEP - Pdxk YES AA_3 chr10 78498253 78498253 A T exonic Olfr57 nonsynonymous SNV NM_147041:c.A711T:p.K237N exonic Olfr57 nonsynonymous SNV uc007fyn.2:c.A711T:p.K237N exonic ENSMUSG00000060205 nonsynonymous SNV ENSMUST00000082244:c.A711T:p.K237N 10qC1 NA NA chr10 78498253 CAAxGCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.997553 0.997553 1 190 1 0 133.862476 0.680556 0.02 0.966074 23 49 639 1301 60 60 0 0 AA 27.968364 93 0 2592 0 KEEP + Olfr57 YES AA_3 chr10 78498502 78498502 A C exonic Olfr57 stoploss SNV NM_147041:c.A960C:p.X320Y exonic Olfr57 stoploss SNV uc007fyn.2:c.A960C:p.X320Y exonic ENSMUSG00000060205 stoploss SNV ENSMUST00000082244:c.A960C:p.X320Y 10qC1 NA NA chr10 78498502 ATAxAGT A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 56 0 0 43.75901 0.625 0.02 -0.210461 9 15 243 435 60 60 0 0 AA 9.0235 30 0 834 0 KEEP + Olfr57 NO AA_3 chr10 79822911 79822911 T A exonic Plk5 nonsynonymous SNV NM_183152:c.T668A:p.L223Q exonic Plk5 nonsynonymous SNV uc007gcx.2:c.T668A:p.L223Q exonic ENSMUSG00000035486 nonsynonymous SNV ENSMUST00000039836:c.T668A:p.L223Q 10qC1 NA NA chr10 79822911 TGCxGAC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 61 0 0 16.063601 0.318182 0.02 -0.192897 15 7 412 187 60 60 0 0 TT 8.712761 29 0 782 0 KEEP + Plk5 YES AA_3 chr10 80493827 80493827 G T exonic Slc39a3 nonsynonymous SNV NM_134135:c.C829A:p.L277M exonic Slc39a3 nonsynonymous SNV uc007gfq.1:c.C829A:p.L277M exonic ENSMUSG00000046822 nonsynonymous SNV ENSMUST00000168076:c.C829A:p.L277M 10qC1 NA NA chr10 80493827 ACAxGAA G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 96 2 0 74.570179 0.75 0.02 -0.315624 9 27 256 705 60 60 0 0 GG 15.641281 52 0 1455 0 KEEP - Slc39a3 NO AA_3 chr11 102747738 102747738 A C exonic Fam187a nonsynonymous SNV NM_025766:c.A1053C:p.L351F exonic Fam187a nonsynonymous SNV uc007lsu.2:c.A1053C:p.L351F exonic ENSMUSG00000075510 nonsynonymous SNV ENSMUST00000100369:c.A1053C:p.L351F 11qE1 NA NA chr11 102747738 GTTxAAA A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 139 2 0 96.388836 0.514286 0.02 1.278683 34 36 890 1003 60 60 0 0 AA 15.935067 53 0 1416 0 KEEP + Fam187a NO AA_3 chr11 106732813 106732813 T A intronic Smurf2 NA NA intronic Smurf2 NA NA intronic ENSMUSG00000018363 NA NA 11qE1 NA NA chr11 106732813 ACCxACA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423439 0.423478 0.999909 47 0 0 66.400188 1 0.02 -0.184121 0 21 0 564 0 60 0 0 TT 7.219082 24 0 671 0 KEEP - Smurf2 YES AA_3 chr11 115465562 115465562 G C intronic Mrps7 NA NA intronic Mrps7 NA NA intronic ENSMUSG00000046756 NA NA 11qE2 NA NA chr11 115465562 TGAxAAG G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.999859 42 0 0 9.301838 0.25 0.02 -0.140312 12 4 342 113 60 60 0 0 GG 5.414818 18 0 513 0 KEEP + Mrps7 NO AA_3 chr11 115941080 115941080 T A exonic Wbp2 nonsynonymous SNV NM_016852:c.A674T:p.E225V exonic Wbp2 nonsynonymous SNV uc007mjv.1:c.A674T:p.E225V exonic ENSMUSG00000034341 nonsynonymous SNV ENSMUST00000106444:c.A539T:p.E180V 11qE2 NA NA chr11 115941080 GCTxCTG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987942 0.987943 0.999999 120 0 0 174.409315 0.983051 0.02 1.080234 1 58 27 1490 60 60 0 0 TT 10.527663 35 0 977 0 KEEP - Wbp2 YES AA_3 chr11 12167023 12167023 T A exonic Cobl synonymous SNV NM_001282993:c.A1392T:p.S464S exonic Cobl synonymous SNV uc007ibe.2:c.A1392T:p.S464S exonic ENSMUSG00000020173 synonymous SNV ENSMUST00000172827:c.A612T:p.S204S 11qA1 NA NA chr11 12167023 ATCxGAG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 73 0 0 105.074396 1 0.02 -0.289042 0 33 0 894 0 60 0 0 TT 9.924515 33 0 895 0 KEEP - Cobl YES AA_3 chr11 121691852 121691852 C A exonic Ptchd3 nonsynonymous SNV NM_029049:c.C236A:p.P79Q exonic Ptchd3 nonsynonymous SNV uc007mwf.2:c.C236A:p.P79Q exonic ENSMUSG00000039198 nonsynonymous SNV ENSMUST00000036690:c.C236A:p.P79Q 11qE2 NA NA chr11 121691852 CACxGCT C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739568 0.739671 0.99986 53 0 0 94.770253 1 0.02 -0.2799 0 31 0 801 0 60 0 0 CC 5.645543 19 0 467 0 KEEP + Ptchd3 NO AA_3 chr11 121768045 121768045 A T intergenic "Ptchd3(dist=63295),NONE(dist=NONE)" NA NA intergenic "Ptchd3(dist=62817),NONE(dist=NONE)" NA NA exonic ENSMUSG00000062632 synonymous SNV ENSMUST00000142242:c.T291A:p.R97R 11qE2 "Score=0.933092;Name=No.13051,chr11:121804463" NA chr11 121768045 ATTxCGA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 57 0 5 16.582409 1 0.02 -0.157846 0 5 0 142 0 36 0 0 AA 10.825345 36 0 957 0 KEEP NA Ptchd3 YES AA_3 chr11 34148587 34148587 T C exonic Dock2 nonsynonymous SNV NM_033374:c.A4364G:p.E1455G exonic Dock2 nonsynonymous SNV uc007ikx.1:c.A4364G:p.E1455G exonic ENSMUSG00000020143 nonsynonymous SNV ENSMUST00000093193:c.A4364G:p.E1455G 11qA4 NA NA chr11 34148587 TTCxCTG T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 88 2 0 24.640543 0.3125 0.02 -0.28061 22 10 610 285 60 60 0 0 TT 11.129418 37 0 1033 0 KEEP - Dock2 NO AA_3 chr11 57977898 57977898 G T exonic Gemin5 synonymous SNV NM_001166669:c.C522A:p.G174G exonic Gemin5 synonymous SNV uc007jal.2:c.C522A:p.G174G exonic ENSMUSG00000037275 synonymous SNV ENSMUST00000035604:c.C522A:p.G174G 11qB1.3 NA NA chr11 57977898 TATxCCA G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353898 0.353947 0.999863 44 0 0 17.108475 0.368421 0.02 -0.166614 12 7 341 192 60 60 0 0 GG 6.015697 20 0 557 0 KEEP - Gemin5 NO AA_3 chr11 58886852 58886852 C T exonic Obscn nonsynonymous SNV NM_001171512:c.G9229A:p.E3077K exonic Obscn nonsynonymous SNV uc007jdb.2:c.G9229A:p.E3077K exonic ENSMUSG00000061462 nonsynonymous SNV ENSMUST00000133040:c.G2323A:p.E775K 11qB1.3 NA NA chr11 58886852 GCTxCTC C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 133 0 0 192.176875 1 0.02 1.160366 0 60 0 1636 0 60 0 0 CC 16.541707 55 0 1554 0 KEEP - Obscn NO AA_3 chr11 58972559 58972559 T G exonic Iba57 nonsynonymous SNV NM_173785:c.A463C:p.S155R exonic A230051G13Rik nonsynonymous SNV uc007jdd.1:c.A463C:p.S155R exonic ENSMUSG00000049287 nonsynonymous SNV ENSMUST00000054523:c.A463C:p.S155R 11qB1.3 NA NA chr11 58972559 GACxTGG T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522155 0.522161 0.999988 63 0 0 24.784554 0.454545 0.02 -0.201396 12 10 325 266 60 60 0 0 TT 8.1198 27 0 737 0 KEEP - Iba57 NO AA_3 chr11 58974901 58974901 G A exonic Iba57 nonsynonymous SNV NM_001270791:c.C601T:p.P201S intronic A230051G13Rik NA NA exonic ENSMUSG00000049287 nonsynonymous SNV ENSMUST00000069631:c.C415T:p.P139S 11qB1.3 NA NA chr11 58974901 TGGxAAG G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.83568 0.835716 0.999957 69 0 0 7.311039 0.108108 0.02 -0.324475 33 4 946 109 60 60 0 0 GG 7.813127 26 0 716 0 KEEP - Iba57 NO AA_3 chr11 61941773 61941773 A T exonic Specc1 synonymous SNV NM_001029936:c.A1695T:p.L565L exonic Specc1 synonymous SNV uc007jin.1:c.A1695T:p.L565L exonic ENSMUSG00000042331 synonymous SNV ENSMUST00000092415:c.A1695T:p.L565L 11qB2 NA NA chr11 61941773 CCTxAAA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196286 0.196312 0.999869 41 0 0 43.965509 1 0.02 -0.122738 0 14 0 373 0 60 0 0 AA 6.315902 21 0 575 0 KEEP + Specc1 YES AA_3 chr11 68844176 68844176 G C intronic Ctc1 NA NA intronic "1500010J02Rik,Ctc1" NA NA intronic ENSMUSG00000020898 NA NA 11qB3 NA NA chr11 68844176 AGAxCTG G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959857 0.959859 0.999998 89 2 0 50.827484 0.4 0.02 -0.438402 30 20 847 559 60 60 0 0 GG 10.225441 34 0 944 0 KEEP + Ctc1 NO AA_3 chr11 70129744 70129744 C T exonic Alox12e synonymous SNV NM_145684:c.G1737A:p.S579S exonic Alox12e synonymous SNV uc007jun.1:c.G1737A:p.S579S exonic ENSMUSG00000018907 synonymous SNV ENSMUST00000019051:c.G1737A:p.S579S 11qB3 NA NA chr11 70129744 CAAxGAG C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 110 0 0 87.625606 0.586207 0.02 1.088944 24 34 625 885 60 60 0 0 CC 12.3182 41 0 1015 0 KEEP - Alox12e NO AA_3 chr11 73402682 73402682 T G exonic Olfr385 nonsynonymous SNV NM_147023:c.A557C:p.K186T exonic Olfr385 nonsynonymous SNV uc007kax.1:c.A557C:p.K186T exonic ENSMUSG00000059470 nonsynonymous SNV ENSMUST00000071553:c.A557C:p.K186T 11qB4 "Score=0.912288;Name=No.13007,chr11:73352450" NA chr11 73402682 AACxTGA T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 203 2 0 119.639219 0.661972 0.02 1.064197 24 47 677 1170 60 60 0 0 TT 31.884243 106 0 2965 0 KEEP - Olfr385 NO AA_3 chr11 74111819 74111819 G C intergenic "Olfr59(dist=8671),Olfr410(dist=35965)" NA NA intergenic "Olfr59(dist=8671),Olfr410(dist=35965)" NA NA ncRNA_exonic ENSMUSG00000082378 NA NA 11qB5 "Score=0.92973;Name=No.13009,chr11:74008947" NA chr11 74111819 ACTxTCC G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 81 0 4 98.172856 1 0.02 -0.262936 0 30 0 839 0 60 0 0 GG 12.932633 43 0 1194 0 KEEP NA Olfr59 NO AA_3 chr11 75405652 75405652 A T intronic Pitpna NA NA intronic Pitpna NA NA ncRNA_intronic ENSMUSG00000085088 NA NA 11qB5 NA NA chr11 75405652 TTCxGAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 146 1 0 154.779316 0.942308 0.02 1.337553 3 49 79 1364 60 60 0 0 AA 21.956761 73 0 2020 0 KEEP + Pitpna YES AA_3 chr11 75484661 75484661 A T intronic Myo1c NA NA intronic Myo1c NA NA intronic ENSMUSG00000017774 NA NA 11qB5 NA NA chr11 75484661 CCCxGTC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818429 0.818465 0.999957 69 0 0 117.449777 1 0.02 -0.31568 0 36 0 1003 0 60 0 0 AA 7.815084 26 0 695 0 KEEP + Myo1c YES AA_3 chr11 9193418 9193418 T A exonic Abca13 synonymous SNV NM_178259:c.T5277A:p.L1759L exonic Abca13 synonymous SNV uc007iaa.1:c.T5277A:p.L1759L exonic ENSMUSG00000004668 synonymous SNV ENSMUST00000042740:c.T5277A:p.L1759L 11qA1 NA NA chr11 9193418 CCTxCGG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 94 0 0 149.671682 0.980392 0.02 1.052961 1 50 27 1280 60 60 0 0 TT 11.12823 37 0 1019 0 KEEP + Abca13 YES AA_3 chr11 94103687 94103687 T A exonic Wfikkn2 synonymous SNV NM_181819:c.A177T:p.R59R exonic Wfikkn2 synonymous SNV uc007kyg.2:c.A177T:p.R59R exonic ENSMUSG00000044177 synonymous SNV ENSMUST00000061469:c.A177T:p.R59R 11qD NA NA chr11 94103687 CTCxCGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 209 0 0 253.751547 0.988095 0.02 0.852347 1 83 28 2166 60 60 0 0 TT 27.068953 90 0 2505 0 KEEP - Wfikkn2 YES AA_3 chr11 95625307 95625307 G T exonic Zfp652 nonsynonymous SNV NM_201609:c.G1761T:p.Q587H exonic Zfp652 nonsynonymous SNV uc007laq.1:c.G1761T:p.Q587H exonic ENSMUSG00000075595 nonsynonymous SNV ENSMUST00000091565:c.G1761T:p.Q587H 11qD NA NA chr11 95625307 CCAxAGC G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 151 0 0 10.115014 0.109375 0.02 0.842367 57 7 1621 163 60 60 0 0 GG 20.747664 69 0 1958 0 KEEP + Zfp652 NO AA_3 chr11 96908409 96908409 A T exonic Mrpl10 synonymous SNV NM_026154:c.A288T:p.I96I exonic Mrpl10 synonymous SNV uc007ldm.1:c.A288T:p.I96I exonic ENSMUSG00000001445 synonymous SNV ENSMUST00000001485:c.A288T:p.I96I 11qD "Score=0.918469;Name=No.16887,chrX:95021934" NA chr11 96908409 GATxGCT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 121 0 0 182.134949 0.967213 0.02 1.143262 2 59 55 1579 60 60 0 0 AA 12.330787 41 0 1120 0 KEEP + Mrpl10 YES AA_3 chr12 10381802 10381802 T A exonic Nt5c1b nonsynonymous SNV NM_027588:c.T541A:p.C181S exonic Nt5c1b nonsynonymous SNV uc007nap.2:c.T541A:p.C181S exonic ENSMUSG00000020622 nonsynonymous SNV ENSMUST00000002456:c.T541A:p.C181S 12qA1.1 NA NA chr12 10381802 AGCxGTG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 160 0 0 117.799321 0.8 0.02 -0.43842 10 40 275 1096 60 60 0 0 TT 25.546674 85 0 2315 0 KEEP + Nt5c1b YES AA_3 chr12 116404225 116404225 A G intergenic "Adam6a(dist=1619600),Zfp386(dist=881710)" NA NA ncRNA_intronic abParts NA NA exonic ENSMUSG00000076715 nonsynonymous SNV ENSMUST00000103524:c.T64C:p.C22R 12qF2 "Score=0.961423;Name=No.26305,chr12:116694666" NA chr12 116404225 AACxAGT A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 231 0 26 79.563175 0.632653 0.02 -0.429456 18 31 493 788 60 60 0 0 AA 46.300214 154 0 4180 0 KEEP NA Adam6a NO AA_3 chr12 17240837 17240837 C G intergenic "Kcnf1(dist=57143),Pdia6(dist=32564)" NA NA intergenic "Kcnf1(dist=57143),Pdia6(dist=32564)" NA NA intergenic "ENSMUSG00000051726(dist=57143),ENSMUSG00000020571(dist=32514)" NA NA 12qA1.1 NA NA chr12 17240837 AGGxCAA C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 320 2 1 58.574809 0.260417 0.02 0.856435 71 25 1900 705 60 60 0 0 CC 53.321924 182 1 4998 11 KEEP NA Kcnf1 NO AA_3 chr12 70323000 70323000 G A exonic Pole2 synonymous SNV NM_011133:c.C381T:p.A127A exonic Pole2 synonymous SNV uc007nrv.1:c.C381T:p.A127A exonic ENSMUSG00000020974 synonymous SNV ENSMUST00000021359:c.C381T:p.A127A 12qC2 NA NA chr12 70323000 CTCxGCT G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 108 0 0 18.902864 0.275862 0.02 -0.254149 21 8 532 225 60 60 0 0 GG 17.134984 57 0 1502 0 KEEP - Pole2 NO AA_3 chr12 74205011 74205011 T A exonic Six4 synonymous SNV NM_011382:c.A1746T:p.A582A exonic Six4 synonymous SNV uc007nwb.1:c.A1746T:p.A582A exonic ENSMUSG00000034460 synonymous SNV ENSMUST00000043208:c.A1746T:p.A582A 12qC3 NA NA chr12 74205011 TTGxGCA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 250 2 0 170.09078 0.766234 0.02 1.118772 18 59 482 1602 60 60 0 0 TT 41.785524 139 0 3743 0 KEEP - Six4 YES AA_3 chr12 8506272 8506272 G C exonic Rhob nonsynonymous SNV NM_007483:c.C167G:p.A56G exonic Rhob nonsynonymous SNV uc007mzp.1:c.C167G:p.A56G exonic ENSMUSG00000054364 nonsynonymous SNV ENSMUST00000067384:c.C167G:p.A56G 12qA1.1 NA NA chr12 8506272 AGCxCCA G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 210 2 0 47.71191 0.298507 0.02 1.206279 47 20 1210 559 60 60 0 0 GG 31.723902 106 0 2627 0 KEEP - Rhob NO AA_3 chr12 85944032 85944032 T A UTR3 Abcd4 NA NA UTR3 Abcd4 NA NA UTR3 ENSMUSG00000021240 NA NA 12qD1 NA NA chr12 85944032 GCAxGCT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 100 2 0 22.700521 0.36 0.02 -0.219192 16 9 419 255 60 60 0 0 TT 16.839875 56 0 1501 0 KEEP - Abcd4 YES AA_3 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 287 6 87 22.152894 0.118812 0.02 2.371783 89 12 2546 324 55 29 0 0 CC 42.407478 141 0 3985 0 KEEP NA Gm2042 NO AA_3 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 357 6 83 31.97709 0.155172 0.02 2.169039 98 18 2591 451 60 29 0 0 TT 52.605102 175 0 4658 0 KEEP NA Gm2042 NO AA_3 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 311 6 37 41.317983 0.180952 0.02 2.648895 86 19 2342 538 60 60 0 0 TT 54.737132 182 0 4974 0 KEEP NA Gm2042 NO AA_3 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 108 2 2 20.912825 0.208333 0.02 -0.420544 38 10 1036 268 60 37 0 0 CC 13.23384 44 0 1211 0 KEEP NA Gm2042 NO AA_3 chr12 92887098 92887098 G A exonic Ston2 synonymous SNV NM_175367:c.C975T:p.I325I exonic Ston2 synonymous SNV uc007okt.2:c.C975T:p.I325I exonic ENSMUSG00000020961 synonymous SNV ENSMUST00000164713:c.C975T:p.I325I 12qD3 NA NA chr12 92887098 GTTxATA G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 126 2 3 23.439514 0.3125 0.02 -0.280619 22 10 632 273 60 60 0 0 GG 22.561881 75 0 2150 0 KEEP - Ston2 NO AA_3 chr13 101415006 101415006 A C exonic Rad17 synonymous SNV NM_001044371:c.T237G:p.T79T exonic Rad17 synonymous SNV uc007rrc.1:c.T237G:p.T79T exonic ENSMUSG00000021635 synonymous SNV ENSMUST00000022136:c.T237G:p.T79T 13qD1 NA NA chr13 101415006 TGAxGTT A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 130 0 0 49.625019 0.5 0.02 -0.385625 22 22 616 524 60 60 0 0 AA 21.355892 71 0 1985 0 KEEP - Rad17 NO AA_3 chr13 11797976 11797976 A T exonic Ryr2 stopgain SNV NM_023868:c.T8052A:p.Y2684X exonic Ryr2 stopgain SNV uc007pld.1:c.T8052A:p.Y2684X exonic ENSMUSG00000021313 stopgain SNV ENSMUST00000021750:c.T8052A:p.Y2684X 13qA1 NA NA chr13 11797976 GACxTAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582877 0.58293 0.999909 55 0 0 25.057558 0.384615 0.02 -0.227638 16 10 405 278 60 60 0 0 AA 7.217279 24 0 646 0 KEEP - Ryr2 YES AA_3 chr13 22170293 22170293 G T intergenic "Hist1h2bj(dist=34814),Vmn1r188(dist=9454)" NA NA intergenic "Hist1h2bj(dist=34814),Vmn1r188(dist=9454)" NA NA ncRNA_exonic ENSMUSG00000082869 NA NA 13qA3.1 "Score=0.931355;Name=No.32668,chr13:22231100" NA chr13 22170293 ATTxTTT G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 391 13 2 136.490464 0.377622 0.02 2.127619 89 54 2567 1519 60 60 0 0 GG 55.952388 186 0 5303 0 KEEP NA Hist1h2bj NO AA_3 chr13 27214286 27214286 T A exonic Prl3d2 stopgain SNV NM_172155:c.T123A:p.Y41X exonic Prl3d2 stopgain SNV uc007pxf.1:c.T123A:p.Y41X exonic ENSMUSG00000062737 stopgain SNV ENSMUST00000080755:c.T126A:p.Y42X 13qA3.1 "Score=0.934555;Name=No.32699,chr13:27167605" NA chr13 27214286 GTAxACA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 132 0 0 42.999675 0.310345 0.02 1.187177 40 18 1007 500 60 60 0 0 TT 18.91105 63 0 1666 0 KEEP + Prl3d2 YES AA_3 chr13 33659836 33659836 G C intergenic "Serpinb9g(dist=71967),Serpinb6d(dist=93438)" NA NA ncRNA_exonic AK161362 NA NA ncRNA_exonic ENSMUSG00000089229 NA NA 13qA3.3 NA NA chr13 33659836 GGCxCAT G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291961 0.292001 0.999863 43 0 0 31.256244 0.647059 0.02 -0.14902 6 11 145 308 60 60 0 0 GG 5.999207 20 0 479 0 KEEP NA Serpinb9g NO AA_3 chr13 35998107 35998107 T G exonic Rpp40 nonsynonymous SNV NM_145938:c.A89C:p.K30T exonic Rpp40 nonsynonymous SNV uc011yyj.1:c.A89C:p.K30T exonic ENSMUSG00000021418 nonsynonymous SNV ENSMUST00000171686:c.A89C:p.K30T 13qA3.3 NA NA chr13 35998107 TGCxTAT T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 44 0 0 16.714012 0.388889 0.02 -0.157823 11 7 306 186 60 60 0 0 TT 6.01556 20 0 553 0 KEEP - Rpp40 NO AA_3 chr13 38114447 38114447 T A exonic Cage1 nonsynonymous SNV NM_027724:c.A1608T:p.R536S exonic Cage1 nonsynonymous SNV uc007qdf.1:c.A1290T:p.R430S exonic ENSMUSG00000044566 nonsynonymous SNV ENSMUST00000089840:c.A1290T:p.R430S 13qA3.3 NA NA chr13 38114447 AGCxCTC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 75 0 0 17.299723 0.296296 0.02 -0.245068 19 8 503 206 60 60 0 0 TT 12.934143 43 0 1202 0 KEEP - Cage1 YES AA_3 chr13 46848058 46848058 T A exonic Kif13a nonsynonymous SNV NM_010617:c.A4621T:p.S1541C exonic Kif13a nonsynonymous SNV uc007qhk.1:c.A136T:p.S46C exonic ENSMUSG00000021375 nonsynonymous SNV ENSMUST00000056978:c.A4621T:p.S1541C 13qA5 NA NA chr13 46848058 GGCxACG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 188 1 0 76.590115 0.413333 0.02 1.029114 44 31 1156 839 60 60 0 0 TT 26.092408 87 0 2319 0 KEEP - Kif13a YES AA_3 chr13 53205969 53205969 T A exonic Ror2 nonsynonymous SNV NM_013846:c.A2455T:p.I819F exonic Ror2 nonsynonymous SNV uc007qnj.1:c.A2455T:p.I819F exonic ENSMUSG00000021464 nonsynonymous SNV ENSMUST00000021918:c.A2455T:p.I819F 13qB1 NA NA chr13 53205969 GGAxGTA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 162 0 0 84.400264 0.402299 0.02 1.031292 52 35 1361 932 60 60 0 0 TT 19.474715 65 0 1698 0 KEEP - Ror2 YES AA_3 chr13 55560493 55560493 A T exonic Grk6 nonsynonymous SNV NM_001038018:c.A1662T:p.R554S exonic Grk6 nonsynonymous SNV uc007qqw.1:c.A1566T:p.R522S exonic ENSMUSG00000074886 nonsynonymous SNV ENSMUST00000001115:c.A1662T:p.R554S 13qB1 NA NA chr13 55560493 GAGxCTC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 68 0 0 26.130892 0.4 0.02 -0.262673 18 12 482 292 60 60 0 0 AA 9.29252 31 0 796 0 KEEP + Grk6 YES AA_3 chr13 56875161 56875161 T G exonic Trpc7 nonsynonymous SNV NM_012035:c.A2553C:p.K851N exonic Trpc7 nonsynonymous SNV uc007qtb.1:c.A2553C:p.K851N exonic ENSMUSG00000021541 nonsynonymous SNV ENSMUST00000173513:c.A2205C:p.K735N 13qB1 NA NA chr13 56875161 GTCxTTG T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641289 0.641347 0.999909 61 0 0 7.327705 0.142857 0.02 -0.245511 24 4 667 104 60 60 0 0 TT 7.217748 24 0 661 0 KEEP - Trpc7 NO AA_3 chr13 59887201 59887201 T A intronic Zcchc6 NA NA intronic Zcchc6 NA NA intronic ENSMUSG00000035248 NA NA 13qB2 NA NA chr13 59887201 AATxACA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 135 0 0 24.690656 0.206897 0.02 1.16917 46 12 1249 318 60 60 0 0 TT 17.444082 58 0 1590 0 KEEP - Zcchc6 YES AA_3 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 175 0 4 16.081355 1 0.02 -0.105228 0 5 0 137 0 23 0 0 CC 38.806443 129 0 3718 0 KEEP + BC052688 NO AA_3 chr13 62108438 62108438 G C intergenic "BC052688(dist=219796),Zfp808(dist=122812)" NA NA intergenic "AK006455(dist=180554),A130040M12Rik(dist=76069)" NA NA intergenic "ENSMUSG00000080451(dist=183414),ENSMUSG00000092904(dist=1389)" NA NA 13qB3 "Score=0.960103;Name=No.33008,chr13:61865990" NA chr13 62108438 ACAxATG G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668463 0.668523 0.999909 59 0 2 8.458881 0.137931 0.02 -0.254327 25 4 719 116 60 36 0 0 GG 7.219695 24 0 687 0 KEEP NA BC052688 NO AA_3 chr13 63414068 63414068 A T exonic Fancc nonsynonymous SNV NM_001282942:c.T1292A:p.L431H exonic Fancc nonsynonymous SNV uc007qxr.1:c.T1292A:p.L431H exonic ENSMUSG00000021461 nonsynonymous SNV ENSMUST00000099444:c.T1292A:p.L431H 13qB3 NA NA chr13 63414068 TCAxGAA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.55282 0.552887 0.999879 49 0 0 10.455129 0.2 0.02 -0.219228 20 5 565 135 60 60 0 0 AA 6.617158 22 0 611 0 KEEP - Fancc YES AA_3 chr13 74192424 74192424 C A exonic Cep72 nonsynonymous SNV NM_028959:c.G416T:p.R139I exonic Cep72 nonsynonymous SNV uc007req.2:c.G416T:p.R139I exonic ENSMUSG00000021572 nonsynonymous SNV ENSMUST00000036456:c.G416T:p.R139I 13qC1 NA NA chr13 74192424 TCTxTCA C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 100 0 0 38.195269 0.421053 0.02 -0.333202 22 16 634 418 60 60 0 0 CC 14.440175 48 0 1383 0 KEEP - Cep72 NO AA_3 chr13 76193217 76193217 G T exonic Gpr150 nonsynonymous SNV NM_175495:c.C1056A:p.D352E exonic Gpr150 nonsynonymous SNV uc007rgg.1:c.C1056A:p.D352E exonic ENSMUSG00000045509 nonsynonymous SNV ENSMUST00000056130:c.C1056A:p.D352E 13qC1 NA NA chr13 76193217 GCAxTCG G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 57 0 0 26.42674 0.478261 0.02 -0.201618 12 11 327 281 60 60 0 0 GG 8.722333 29 0 802 0 KEEP - Gpr150 NO AA_3 chr13 81558293 81558293 A C exonic Gpr98 synonymous SNV NM_054053:c.T15759G:p.T5253T exonic "Gpr98,Vlgr1" synonymous SNV uc011zcf.1:c.T1272G:p.T424T exonic ENSMUSG00000069170 synonymous SNV ENSMUST00000095585:c.T15759G:p.T5253T 13qC3 NA NA chr13 81558293 GAAxGTC A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 135 4 0 46.472019 0.403846 0.02 1.23941 31 21 857 517 60 60 0 0 AA 20.1535 67 0 1881 0 KEEP - Gpr98 NO AA_3 chr13 81702584 81702584 T A exonic Gpr98 nonsynonymous SNV NM_054053:c.A3271T:p.I1091L exonic Gpr98 nonsynonymous SNV uc007rhp.1:c.A1111T:p.I371L exonic ENSMUSG00000069170 nonsynonymous SNV ENSMUST00000109565:c.A1111T:p.I371L 13qC3 NA NA chr13 81702584 CTAxATA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260941 0.260965 0.999909 40 0 0 15.06636 0.375 0.02 -0.140269 10 6 255 168 60 60 0 0 TT 7.216923 24 0 638 0 KEEP - Gpr98 YES AA_3 chr13 91940312 91940312 T A intronic Zcchc9 NA NA intronic Zcchc9 NA NA intronic ENSMUSG00000021621 NA NA 13qC3 NA NA chr13 91940312 CTGxAAG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 136 0 0 75.002644 0.491228 0.02 1.177929 29 28 751 788 60 60 0 0 TT 18.945471 63 0 1688 0 KEEP - Zcchc9 YES AA_3 chr14 21534065 21534065 A G exonic Zswim8 synonymous SNV NM_001252081:c.A2280G:p.P760P exonic "2310021P13Rik,Kiaa0913" synonymous SNV uc007skq.1:c.A1917G:p.P639P exonic ENSMUSG00000021819 synonymous SNV ENSMUST00000022358:c.A2280G:p.P760P 14qA3 NA NA chr14 21534065 GCCxCTG A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 66 0 0 16.650387 0.228571 0.02 -0.306812 27 8 705 210 60 60 0 0 AA 8.115764 27 0 710 0 KEEP + Zswim8 NO AA_3 chr14 28277293 28277293 T G exonic D14Abb1e nonsynonymous SNV NM_001114879:c.T2262G:p.D754E exonic D14Abb1e nonsynonymous SNV uc007stt.1:c.T750G:p.D250E exonic ENSMUSG00000040651 nonsynonymous SNV ENSMUST00000022450:c.T2262G:p.D754E 14qA3 NA NA chr14 28277293 AGAxTCC T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 101 0 0 40.781871 0.454545 0.02 -0.289364 18 15 480 435 60 60 0 0 TT 16.537708 55 0 1466 0 KEEP + D14Abb1e NO AA_3 chr14 30890965 30890965 A C intronic Cacna1d NA NA intronic Cacna1d NA NA intronic ENSMUSG00000015968 NA NA 14qB NA NA chr14 30890965 AGAxGTT A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036492 0.036766 0.99257 14 0 0 6.720956 0.5 0.02 -0.052577 3 3 83 71 60 60 0 0 AA 2.406591 8 0 228 0 KEEP - Cacna1d NO AA_3 chr14 42559873 42559873 G T intergenic "Sftpd(dist=561386),1700091H14Rik(dist=108684)" NA NA intergenic "Sftpd(dist=561386),AK047145(dist=502270)" NA NA intronic "ENSMUSG00000052334,ENSMUSG00000079270" NA NA 14qB "Score=0.98188;Name=No.51375,chr14:44005582" NA chr14 42559873 CAAxGAT G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 102 0 0 20.009525 0.470588 0.02 -0.157824 9 8 248 213 60 60 0 0 GG 21.35499 71 0 1977 0 KEEP NA Sftpd NO AA_3 chr14 44067619 44067619 T C intergenic "1700001F09Rik(dist=41275),Gm10375(dist=112673)" NA NA intergenic "1700001F09Rik(dist=41275),Gm10375(dist=112673)" NA NA ncRNA_exonic ENSMUSG00000090788 NA NA 14qC1 "Score=0.966535;Name=No.52906,chr14:44978204" NA chr14 44067619 AACxGCT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1363 4 29 56.472935 0.101538 0.02 7.126104 292 33 8085 870 60 54 0 0 TT 258.935537 861 0 23819 0 KEEP NA 1700001F09Rik NO AA_3 chr14 52032928 52032928 C A exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C422A:p.A141D exonic "Vmn2r-ps160,Vmn2r88" nonsynonymous SNV uc009vao.1:c.C422A:p.A141D exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000022438:c.C422A:p.A141D 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032928 GTGxCAT C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 193 4 0 28.074249 0.202899 0.02 0.843269 55 14 1560 365 60 60 0 0 CC 28.874457 96 0 2654 0 KEEP + Vmn2r88 NO AA_3 chr14 52032935 52032935 T C exonic Vmn2r88 synonymous SNV NM_011686:c.T429C:p.G143G exonic "Vmn2r-ps160,Vmn2r88" synonymous SNV uc009vao.1:c.T429C:p.G143G exonic ENSMUSG00000000606 synonymous SNV ENSMUST00000022438:c.T429C:p.G143G 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032935 AGGxCTT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 202 5 1 43.840934 0.275362 0.02 1.031147 50 19 1331 524 60 60 0 0 TT 30.046655 100 0 2713 0 KEEP + Vmn2r88 NO AA_3 chr14 52036477 52036477 C T exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C1640T:p.P547L exonic Vmn2r88 nonsynonymous SNV uc009vao.1:c.C1640T:p.P547L exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000159674:c.C1481T:p.P494L 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52036477 GCCxAGA C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 438 23 11 31.534242 0.180723 0.02 0.870904 68 15 1964 414 60 60 0 0 CC 86.019164 286 0 8140 0 KEEP + Vmn2r88 NO AA_3 chr14 53159088 53159088 G A intergenic "Olfr1507(dist=43718),A430107P09Rik(dist=1126527)" NA NA intergenic "Olfr1507(dist=43718),Gm10886(dist=27785)" NA NA intergenic "ENSMUSG00000059887(dist=43718),ENSMUSG00000076759(dist=27880)" NA NA 14qC2 "Score=0.979771;Name=No.56976,chrX:12181604" NA chr14 53159088 CATxTAG G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 102 0 1 42.19365 0.53125 0.02 -0.280547 15 17 424 437 60 60 0 0 GG 15.943524 53 0 1513 0 KEEP NA Olfr1507 NO AA_3 chr14 56880054 56880054 G T exonic Gzmb nonsynonymous SNV NM_013542:c.C73A:p.H25N exonic Gzmb nonsynonymous SNV uc007ubv.1:c.C73A:p.H25N exonic ENSMUSG00000015437 nonsynonymous SNV ENSMUST00000015581:c.C73A:p.H25N 14qC3 NA NA chr14 56880054 CATxTCC G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 59 2 0 8.60206 0.25 0.02 -0.140286 12 4 331 106 60 60 0 0 GG 9.023843 30 0 843 0 KEEP - Gzmb NO AA_3 chr14 59941977 59941977 A T intronic Phf11b NA NA intronic Gm4902 NA NA intronic ENSMUSG00000091649 NA NA 14qC3 "Score=0.958242;Name=No.53405,chr14:59881065" NA chr14 59941977 CACxCTT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 101 0 0 38.737067 0.416667 0.02 -0.315655 21 15 565 422 60 60 0 0 AA 18.646445 62 0 1685 0 KEEP - Phf11b YES AA_3 chr14 61391182 61391182 G T exonic C1qtnf9 nonsynonymous SNV NM_183175:c.G49T:p.V17L exonic C1qtnf9 nonsynonymous SNV uc007uff.2:c.G49T:p.V17L exonic ENSMUSG00000071347 nonsynonymous SNV ENSMUST00000025940:c.G49T:p.V17L 14qD1 NA NA chr14 61391182 AGTxTAT G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999998 58 0 0 24.727153 0.642857 0.02 -0.122758 5 9 140 244 60 60 0 0 GG 10.226587 34 0 952 0 KEEP + C1qtnf9 NO AA_3 chr14 61991915 61991915 T A exonic Kpna3 synonymous SNV NM_008466:c.A912T:p.A304A exonic Kpna3 synonymous SNV uc007ufw.2:c.A912T:p.A304A exonic ENSMUSG00000021929 synonymous SNV ENSMUST00000022496:c.A912T:p.A304A 14qD1 NA NA chr14 61991915 GAGxGCT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 59 0 0 9.064047 0.2 0.02 -0.175363 16 4 430 115 60 60 0 0 TT 8.420911 28 0 760 0 KEEP - Kpna3 YES AA_3 chr14 63666441 63666441 C A exonic Defb42 nonsynonymous SNV NM_001034910:c.C41A:p.T14K exonic Defb42 nonsynonymous SNV uc007uhf.2:c.C41A:p.T14K exonic ENSMUSG00000054763 nonsynonymous SNV ENSMUST00000067990:c.C41A:p.T14K 14qD1 NA NA chr14 63666441 TGAxATC C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 161 0 0 48.46945 0.395833 0.02 -0.420929 29 19 833 534 60 60 0 0 CC 27.365721 91 0 2565 0 KEEP + Defb42 NO AA_3 chr14 7365254 7365254 C T intergenic "LOC100861615(dist=245530),Gm10406(dist=473375)" NA NA intergenic "Gm10408(dist=121162),Gm2897(dist=54904)" NA NA intronic "ENSMUSG00000056940,ENSMUSG00000090627" NA NA 14qA1 "Score=0.981875;Name=No.43838,chr14:3956019" NA chr14 7365254 TAAxCTG C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 822 10 170 12.806834 0.107692 0.02 1.125239 58 7 1624 191 36 36 0 0 CC 170.506817 567 0 15601 0 KEEP NA LOC100861615 NO AA_3 chr14 8767205 8767205 C T exonic Flnb synonymous SNV NM_134080:c.C6729T:p.A2243A exonic Flnb synonymous SNV uc007sek.1:c.C6729T:p.A2243A exonic ENSMUSG00000025278 synonymous SNV ENSMUST00000052678:c.C6762T:p.A2254A 14qA1 NA NA chr14 8767205 TGCxCAA C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 74 0 0 18.82757 0.32 0.02 -0.218467 17 8 460 218 60 60 0 0 CC 11.725014 39 0 1064 0 KEEP + Flnb NO AA_3 chr15 100232062 100232062 T A exonic Slc11a2 nonsynonymous SNV NM_001146161:c.A1118T:p.Y373F exonic Slc11a2 nonsynonymous SNV uc007xrc.2:c.A1118T:p.Y373F exonic ENSMUSG00000023030 nonsynonymous SNV ENSMUST00000124324:c.A191T:p.Y64F 15qF1 NA NA chr15 100232062 ATGxAGA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835598 0.835716 0.999859 67 0 0 23.336371 0.277778 0.02 -0.324372 26 10 674 278 60 60 0 0 TT 5.413001 18 0 482 0 KEEP - Slc11a2 YES AA_3 chr15 100344516 100344516 T A exonic Tfcp2 nonsynonymous SNV NM_033476:c.A1004T:p.Q335L exonic Tcfcp2 nonsynonymous SNV uc007xrm.1:c.A1004T:p.Q335L exonic ENSMUSG00000009733 nonsynonymous SNV ENSMUST00000009877:c.A1004T:p.Q335L 15qF1 NA NA chr15 100344516 CATxGCT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 588 2 0 242.801728 0.358156 0.02 6.004049 181 101 4887 2745 60 60 0 0 TT 64.362176 214 0 5883 0 KEEP - Tfcp2 YES AA_3 chr15 101358189 101358189 G A exonic Krt84 synonymous SNV NM_008474:c.C1395T:p.A465A exonic Krt84 synonymous SNV uc007xtm.2:c.C1395T:p.A465A exonic ENSMUSG00000044294 synonymous SNV ENSMUST00000023720:c.C1395T:p.A465A 15qF2 NA NA chr15 101358189 CAGxGCC G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 197 3 0 88.8908 0.363636 0.02 0.827112 63 36 1765 999 60 60 0 0 GG 18.914651 63 0 1738 0 KEEP - Krt84 NO AA_3 chr15 12387963 12387963 T A exonic Pdzd2 nonsynonymous SNV NM_001081064:c.A568T:p.N190Y exonic Pdzd2 nonsynonymous SNV uc007vhq.1:c.A568T:p.N190Y exonic ENSMUSG00000022197 nonsynonymous SNV ENSMUST00000075317:c.A568T:p.N190Y 15qA1 NA NA chr15 12387963 TGTxGCC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987942 0.987943 0.999999 109 2 0 96.626095 0.6 0.02 1.169191 24 36 641 970 60 60 0 0 TT 10.827543 36 0 988 0 KEEP - Pdzd2 YES AA_3 chr15 31531463 31531463 T A UTR5 Cct5 NA NA UTR5 Cct5 NA NA UTR5 ENSMUSG00000022234 NA NA 15qB2 NA NA chr15 31531463 TGGxGGA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800148 0.800245 0.999879 62 0 0 35.348956 0.4 0.02 -0.306883 21 14 561 389 60 60 0 0 TT 6.609952 22 0 577 0 KEEP - Cct5 YES AA_3 chr15 71743200 71743200 C A exonic Col22a1 synonymous SNV NM_027174:c.G2271T:p.G757G exonic Col22a1 synonymous SNV uc007wbj.2:c.G2271T:p.G757G exonic ENSMUSG00000079022 synonymous SNV ENSMUST00000159993:c.G2271T:p.G757G 15qD3 NA NA chr15 71743200 TGTxCCC C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 205 0 0 44.693368 0.184 0.02 1.905644 102 23 2820 596 60 60 0 0 CC 18.576912 62 0 1693 0 KEEP - Col22a1 NO AA_3 chr15 76009862 76009862 T C exonic Plec nonsynonymous SNV NM_011117:c.A6590G:p.K2197R exonic Plec nonsynonymous SNV uc007wir.2:c.A6503G:p.K2168R exonic ENSMUSG00000022565 nonsynonymous SNV ENSMUST00000023226:c.A6503G:p.K2168R 15qD3 NA NA chr15 76009862 TTTxTAT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 182 0 0 12.68602 0.066667 0.02 2.657604 98 7 2678 205 60 60 0 0 TT 19.169809 64 0 1732 0 KEEP - Plec NO AA_3 chr15 76368423 76368423 C G exonic Fbxl6 nonsynonymous SNV NM_013909:c.G475C:p.V159L exonic Fbxl6 nonsynonymous SNV uc007wkq.2:c.G475C:p.V159L exonic ENSMUSG00000022559 nonsynonymous SNV ENSMUST00000023219:c.G475C:p.V159L 15qD3 NA NA chr15 76368423 CAAxCAG C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998464 0.998465 0.999999 124 1 0 20.354601 0.135135 0.02 1.037696 64 10 1775 283 60 60 0 0 CC 10.764554 36 0 963 0 KEEP - Fbxl6 NO AA_3 chr15 76545906 76545906 A G exonic Lrrc24 nonsynonymous SNV NM_198119:c.T1462C:p.F488L exonic Lrrc24 nonsynonymous SNV uc007wme.1:c.T1462C:p.F488L exonic ENSMUSG00000033707 nonsynonymous SNV ENSMUST00000049956:c.T1462C:p.F488L 15qD3 NA NA chr15 76545906 GGAxCAG A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 123 0 0 38.626919 0.236111 0.02 1.260892 55 17 1486 476 60 60 0 0 AA 12.331731 41 0 1133 0 KEEP - Lrrc24 NO AA_3 chr15 76548859 76548859 G A exonic Lrrc24 synonymous SNV NM_198119:c.C255T:p.R85R exonic Lrrc24 synonymous SNV uc007wme.1:c.C255T:p.R85R exonic ENSMUSG00000033707 synonymous SNV ENSMUST00000049956:c.C255T:p.R85R 15qD3 NA NA chr15 76548859 GTGxCGC G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 145 2 0 75.441729 0.376471 0.02 0.826789 53 32 1438 846 60 60 0 0 GG 13.234473 44 0 1224 0 KEEP - Lrrc24 NO AA_3 chr15 84572415 84572415 T A exonic Arhgap8 nonsynonymous SNV NM_001164628:c.T260A:p.L87Q exonic Arhgap8 nonsynonymous SNV uc007xck.2:c.T260A:p.L87Q exonic ENSMUSG00000078954 nonsynonymous SNV ENSMUST00000168811:c.T260A:p.L87Q 15qE2 NA NA chr15 84572415 CCCxAGG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 101 0 0 86.691021 0.632653 0.02 -0.429624 18 31 473 859 60 60 0 0 TT 12.326793 41 0 1091 0 KEEP + Arhgap8 YES AA_3 chr15 88989075 88989075 G A exonic Plxnb2 nonsynonymous SNV NM_001284506:c.C4540T:p.P1514S exonic Plxnb2 nonsynonymous SNV uc007xfr.1:c.C4540T:p.P1514S exonic ENSMUSG00000036606 nonsynonymous SNV ENSMUST00000109330:c.C3310T:p.P1104S 15qE3 NA NA chr15 88989075 CTGxCTT G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 1 1 192 2 0 29.532453 0.134921 0.02 2.090357 109 17 3030 430 60 60 0 0 GG 12.196194 44 1 1218 9 KEEP - Plxnb2 NO AA_3 chr15 91021937 91021937 T A exonic Abcd2 nonsynonymous SNV NM_011994:c.A103T:p.T35S exonic Abcd2 nonsynonymous SNV uc007xhx.1:c.A103T:p.T35S exonic ENSMUSG00000055782 nonsynonymous SNV ENSMUST00000069511:c.A103T:p.T35S 15qE3 NA NA chr15 91021937 GGGxTTT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.847205 0.851984 0.994391 55 0 0 44.476026 0.473684 0.02 -0.332918 20 18 515 473 60 60 0 0 TT 3.909626 13 0 353 0 KEEP - Abcd2 YES AA_3 chr15 91076179 91076179 A G intergenic "Abcd2(dist=53941),Slc2a13(dist=21943)" NA NA intergenic "Abcd2(dist=53941),Slc2a13(dist=21943)" NA NA exonic ENSMUSG00000078932 synonymous SNV ENSMUST00000109284:c.A792G:p.E264E 15qE3 NA NA chr15 91076179 AGAxGAA A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 117 0 0 20.812076 0.142857 0.02 1.170921 60 10 1675 285 60 60 0 0 AA 12.028336 40 0 1096 0 KEEP NA Abcd2 NO AA_3 chr15 91728258 91728258 T A intronic Muc19 NA NA intronic Muc19 NA NA intronic ENSMUSG00000044021 NA NA 15qE3 NA NA chr15 91728258 GGGxCCT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963772 0.963774 0.999998 88 0 0 37.401204 0.333333 0.02 1.150458 34 17 912 434 60 60 0 0 TT 9.62426 32 0 875 0 KEEP + Muc19 YES AA_3 chr15 91758311 91758311 T A intronic Muc19 NA NA intronic Muc19 NA NA intronic ENSMUSG00000044021 NA NA 15qE3 NA NA chr15 91758311 TTTxATC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 89 0 0 44.443683 0.358491 0.02 1.230567 34 19 905 504 60 60 0 0 TT 9.624142 32 0 874 0 KEEP + Muc19 YES AA_3 chr15 98674198 98674198 C G exonic Kmt2d nonsynonymous SNV NM_001033276:c.G13511C:p.G4504A exonic Mll2 nonsynonymous SNV uc007xoc.2:c.G13511C:p.G4504A exonic ENSMUSG00000048154 nonsynonymous SNV ENSMUST00000023741:c.G13511C:p.G4504A 15qF1 NA NA chr15 98674198 GAGxCTG C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 144 1 0 10.019919 0.064516 0.02 0.871427 87 6 2400 168 60 60 0 0 CC 11.203694 41 1 1073 9 KEEP - Kmt2d NO AA_3 chr15 98680177 98680177 G A exonic Kmt2d synonymous SNV NM_001033276:c.C9696T:p.S3232S exonic Mll2 synonymous SNV uc007xoc.2:c.C9696T:p.S3232S exonic ENSMUSG00000048154 synonymous SNV ENSMUST00000023741:c.C9696T:p.S3232S 15qF1 NA NA chr15 98680177 TGAxCTC G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 158 0 0 66.631595 0.325843 0.02 0.914891 60 29 1725 772 60 60 0 0 GG 15.038708 50 0 1403 0 KEEP - Kmt2d NO AA_3 chr15 99777131 99777131 T A intergenic "1700030F18Rik(dist=15042),Larp4(dist=23365)" NA NA exonic Fam186a nonsynonymous SNV uc007xqk.1:c.A1662T:p.E554D intronic ENSMUSG00000045350 NA NA 15qF1 NA NA chr15 99777131 ACCxTCA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 130 0 0 51.908002 0.306667 0.02 0.940271 52 23 1431 610 60 60 0 0 TT 13.535367 45 0 1253 0 KEEP NA 1700030F18Rik YES AA_3 chr15 99785888 99785888 C A intergenic "1700030F18Rik(dist=23799),Larp4(dist=14608)" NA NA exonic Fam186a nonsynonymous SNV uc007xqk.1:c.G401T:p.W134L exonic ENSMUSG00000045350 nonsynonymous SNV ENSMUST00000100209:c.G401T:p.W134L 15qF1 NA NA chr15 99785888 AGCxAGG C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 203 6 0 25.973366 0.115702 0.02 2.124831 107 14 3071 381 60 60 0 0 CC 16.543816 55 0 1552 0 KEEP NA 1700030F18Rik NO AA_3 chr15 99800675 99800675 T A UTR5 Larp4 NA NA UTR5 Larp4 NA NA UTR5 ENSMUSG00000023025 NA NA 15qF1 NA NA chr15 99800675 AAAxACG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 326 2 0 271.748627 0.597561 0.02 3.630417 66 98 1692 2730 60 60 0 0 TT 32.47046 108 0 2850 0 KEEP + Larp4 YES AA_3 chr16 10395234 10395234 C T exonic Tekt5 synonymous SNV NM_001099275:c.G279A:p.R93R exonic Tekt5 synonymous SNV uc007ydl.2:c.G279A:p.R93R exonic ENSMUSG00000039179 synonymous SNV ENSMUST00000043415:c.G279A:p.R93R 16qA1 NA NA chr16 10395234 GTCxCTT C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 93 0 0 12.651453 0.193548 0.02 -0.27182 25 6 697 164 60 60 0 0 CC 15.941099 53 0 1473 0 KEEP - Tekt5 NO AA_3 chr16 13725205 13725205 A T exonic Pla2g10 nonsynonymous SNV NM_011987:c.T310A:p.C104S exonic Pla2g10 nonsynonymous SNV uc007ygh.1:c.T310A:p.C104S exonic ENSMUSG00000022683 nonsynonymous SNV ENSMUST00000023364:c.T310A:p.C104S 16qA1 NA NA chr16 13725205 CACxCAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 95 0 0 40.340342 0.361702 0.02 -0.411829 30 17 790 456 60 60 0 0 AA 12.330296 41 0 1109 0 KEEP - Pla2g10 YES AA_3 chr16 14480478 14480478 A T intergenic "Abcc1(dist=5507),A630010A05Rik(dist=81932)" NA NA intergenic "Abcc1(dist=5511),A630010A05Rik(dist=81932)" NA NA exonic ENSMUSG00000079736 nonsynonymous SNV ENSMUST00000115782:c.T251A:p.L84Q 16qA1 NA NA chr16 14480478 TCCxGTA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 103 2 0 61.200574 0.75 0.02 -0.245321 7 21 173 580 60 60 0 0 AA 17.144027 57 0 1574 0 KEEP NA Abcc1 YES AA_3 chr16 17507259 17507259 A T exonic Aifm3 stoploss SNV NM_175178:c.A1797T:p.X599C exonic Aifm3 stoploss SNV uc007ykw.1:c.A1818T:p.X606C exonic ENSMUSG00000022763 stoploss SNV ENSMUST00000023448:c.A1797T:p.X599C 16qA3 NA NA chr16 17507259 CTGxGCT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 191 0 0 110.388166 0.75 0.02 1.141433 13 39 356 1045 60 60 0 0 AA 33.08334 110 0 3066 0 KEEP + Aifm3 YES AA_3 chr16 18453802 18453802 T C intronic Txnrd2 NA NA ncRNA_intronic TXNRD2 NA NA intronic ENSMUSG00000075704 NA NA 16qA3 NA NA chr16 18453802 TGGxTTT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 87 0 0 22.697824 0.375 0.02 -0.219195 15 9 406 253 60 60 0 0 TT 12.9327 43 0 1182 0 KEEP + Txnrd2 NO AA_3 chr16 19957436 19957436 C T exonic Klhl6 synonymous SNV NM_183390:c.G465A:p.L155L exonic Klhl6 synonymous SNV uc007ypg.2:c.G465A:p.L155L exonic ENSMUSG00000043008 stopgain SNV ENSMUST00000166801:c.G299A:p.W100X 16qA3 NA NA chr16 19957436 CACxAGC C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 55 0 0 15.304991 0.368421 0.02 -0.166563 12 7 345 174 60 60 0 0 CC 9.626435 32 0 914 0 KEEP - Klhl6 NO AA_3 chr16 20738319 20738319 A T exonic Chrd nonsynonymous SNV NM_001278041:c.A1925T:p.Q642L exonic Chrd nonsynonymous SNV uc007yrd.1:c.A1859T:p.Q620L exonic ENSMUSG00000006958 nonsynonymous SNV ENSMUST00000007171:c.A1859T:p.Q620L 16qB1 NA NA chr16 20738319 CACxGGG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 111 0 0 83.550837 0.848485 0.02 -0.289342 5 28 134 763 60 60 0 0 AA 18.347883 61 0 1694 0 KEEP + Chrd YES AA_3 chr16 22249186 22249186 T C exonic Tra2b nonsynonymous SNV NM_009186:c.A659G:p.D220G exonic Tra2b nonsynonymous SNV uc007ysc.1:c.A659G:p.D220G exonic ENSMUSG00000022858 nonsynonymous SNV ENSMUST00000023564:c.A359G:p.D120G 16qB1 NA NA chr16 22249186 TAGxCTC T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 501 3 0 11.733091 0.065421 0.02 2.426274 100 7 2617 196 60 60 0 0 TT 92.503995 310 1 8315 5 KEEP - Tra2b NO AA_3 chr16 29620440 29620440 A T intronic Opa1 NA NA intronic Opa1 NA NA intronic ENSMUSG00000038084 NA NA 16qB2 NA NA chr16 29620440 CATxAAT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 65 0 0 64.134532 0.733333 0.02 -0.263045 8 22 209 612 60 60 0 0 AA 9.022013 30 0 809 0 KEEP + Opa1 YES AA_3 chr16 3746802 3746802 A T exonic Zfp263 nonsynonymous SNV NM_148924:c.A680T:p.Y227F exonic Zfp263 nonsynonymous SNV uc007xyo.2:c.A305T:p.Y102F exonic ENSMUSG00000022529 nonsynonymous SNV ENSMUST00000023176:c.A680T:p.Y227F 16qA1 NA NA chr16 3746802 TGTxTAT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260933 0.260965 0.999879 43 0 0 6.680211 0.1875 0.02 -0.140251 13 3 333 86 60 60 0 0 AA 6.614896 22 0 579 0 KEEP + Zfp263 YES AA_3 chr16 4044665 4044665 T G exonic Trap1 nonsynonymous SNV NM_026508:c.A1748C:p.D583A exonic Trap1 nonsynonymous SNV uc007xzk.1:c.A1748C:p.D583A exonic ENSMUSG00000005981 nonsynonymous SNV ENSMUST00000006137:c.A1748C:p.D583A 16qA1 NA NA chr16 4044665 AGAxCTT T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 125 0 0 44.795894 0.472222 0.02 -0.31564 19 17 503 475 60 60 0 0 TT 20.447406 68 0 1859 0 KEEP - Trap1 NO AA_3 chr16 43821601 43821601 A G exonic Drd3 nonsynonymous SNV NM_007877:c.A1070G:p.K357R exonic Drd3 nonsynonymous SNV uc007zgi.1:c.A1070G:p.K357R exonic ENSMUSG00000022705 nonsynonymous SNV ENSMUST00000023390:c.A1070G:p.K357R 16qB4 NA NA chr16 43821601 TGAxGCT A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 92 1 0 12.669877 0.157895 0.02 -0.33314 32 6 873 170 60 60 0 0 AA 12.031431 40 0 1116 0 KEEP + Drd3 NO AA_3 chr16 49955138 49955138 A T intergenic "Cd47(dist=43342),Gm6936(dist=25435)" NA NA ncRNA_exonic AK135986 NA NA intergenic "ENSMUSG00000055447(dist=40015),ENSMUSG00000022641(dist=236819)" NA NA 16qB5 NA NA chr16 49955138 CACxGAT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 69 0 0 54.37198 0.76 0.02 -0.219202 6 19 166 513 60 70 0 0 AA 11.430249 38 0 1063 0 KEEP NA Cd47 YES AA_3 chr16 5217900 5217900 A T exonic AU021092 nonsynonymous SNV NM_001033220:c.T488A:p.L163Q exonic AU021092 nonsynonymous SNV uc012aaz.1:c.T488A:p.L163Q exonic ENSMUSG00000051669 nonsynonymous SNV ENSMUST00000050160:c.T488A:p.L163Q 16qA1 NA NA chr16 5217900 CCTxGTA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 61 1 0 11.16696 0.227273 0.02 -0.201649 17 5 453 139 60 60 0 0 AA 8.719278 29 0 783 0 KEEP - AU021092 YES AA_3 chr16 5220478 5220478 A T exonic AU021092 nonsynonymous SNV NM_001033220:c.T257A:p.M86K exonic AU021092 nonsynonymous SNV uc012aaz.1:c.T257A:p.M86K exonic ENSMUSG00000051669 nonsynonymous SNV ENSMUST00000050160:c.T257A:p.M86K 16qA1 NA NA chr16 5220478 CGCxTGC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 84 2 0 23.728627 0.294118 0.02 -0.298064 24 10 616 279 60 60 0 0 AA 11.427619 38 0 1022 0 KEEP - AU021092 YES AA_3 chr16 55998241 55998241 A T exonic Zbtb11 synonymous SNV NM_173026:c.A1914T:p.S638S exonic Zbtb11 synonymous SNV uc012ago.1:c.A1914T:p.S638S exonic ENSMUSG00000022601 synonymous SNV ENSMUST00000050248:c.A1914T:p.S638S 16qC1.1 NA NA chr16 55998241 ATCxTCT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 51 0 0 35.313881 0.75 0.02 -0.149071 4 12 108 335 60 60 0 0 AA 8.721627 29 0 786 0 KEEP + Zbtb11 YES AA_3 chr16 59167576 59167576 A T exonic Olfr196 nonsynonymous SNV NM_146779:c.T392A:p.L131H exonic Olfr196 nonsynonymous SNV uc007zou.1:c.T392A:p.L131H exonic ENSMUSG00000063603 nonsynonymous SNV ENSMUST00000077027:c.T392A:p.L131H 16qC1.3 NA NA chr16 59167576 TAGxGTA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 64 4 1 21.627741 0.409091 0.02 -0.271822 13 9 361 238 60 60 0 0 AA 8.687265 29 0 780 0 KEEP - Olfr196 YES AA_3 chr16 59167723 59167723 A T exonic Olfr196 nonsynonymous SNV NM_146779:c.T245A:p.L82H exonic Olfr196 nonsynonymous SNV uc007zou.1:c.T245A:p.L82H exonic ENSMUSG00000063603 nonsynonymous SNV ENSMUST00000077027:c.T245A:p.L82H 16qC1.3 NA NA chr16 59167723 AAGxGCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 115 8 1 23.283215 0.244444 0.02 -0.403298 34 11 918 289 60 60 0 0 AA 18.949024 63 0 1751 0 KEEP - Olfr196 YES AA_3 chr16 91659426 91659426 A T exonic Son synonymous SNV NM_019973:c.A4815T:p.T1605T exonic Son synonymous SNV uc012aii.1:c.A4245T:p.T1415T exonic ENSMUSG00000022961 synonymous SNV ENSMUST00000114036:c.A4815T:p.T1605T 16qC3.3 NA NA chr16 91659426 CACxGAA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 114 1 0 95.010065 0.666667 0.02 1.248047 17 34 463 929 60 60 0 0 AA 15.640121 52 0 1440 0 KEEP + Son YES AA_3 chr17 12852575 12852575 T A exonic Slc22a1 synonymous SNV NM_009202:c.A1116T:p.T372T exonic Slc22a1 synonymous SNV uc008akx.1:c.A1116T:p.T372T exonic ENSMUSG00000023829 synonymous SNV ENSMUST00000024596:c.A1116T:p.T372T 17qA1 NA NA chr17 12852575 CCCxGTG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12036 0.120436 0.999366 36 0 0 12.792816 0.454545 0.02 -0.096458 6 5 168 137 60 60 0 0 TT 5.113461 17 0 474 0 KEEP - Slc22a1 YES AA_3 chr17 12885540 12885540 T A exonic Igf2r nonsynonymous SNV NM_010515:c.A5777T:p.Y1926F exonic Igf2r nonsynonymous SNV uc008aky.1:c.A5777T:p.Y1926F exonic ENSMUSG00000023830 nonsynonymous SNV ENSMUST00000024599:c.A5777T:p.Y1926F 17qA1 NA NA chr17 12885540 TCAxAAT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 177 0 0 88.274452 0.478873 0.02 1.0728 37 34 942 934 60 60 0 0 TT 25.560332 85 0 2268 0 KEEP - Igf2r YES AA_3 chr17 15020644 15020644 A T exonic Wdr27 nonsynonymous SNV NM_175173:c.T2204A:p.L735Q exonic Wdr27 nonsynonymous SNV uc008and.1:c.T443A:p.L148Q exonic ENSMUSG00000046991 nonsynonymous SNV ENSMUST00000060103:c.T2204A:p.L735Q 17qA2 NA NA chr17 15020644 CACxGTC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 79 1 0 7.966064 0.153846 0.02 -0.22781 22 4 583 109 60 60 0 0 AA 12.329861 41 0 1118 0 KEEP - Wdr27 YES AA_3 chr17 15487996 15487996 T A ncRNA_exonic Gm10510 NA NA ncRNA_exonic Gm10510 NA NA intergenic "ENSMUSG00000087655(dist=110249),ENSMUSG00000014773(dist=16322)" NA NA 17qA2 NA NA chr17 15487996 TCTxCTT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999998 86 0 0 44.28862 0.431818 0.02 -0.385745 25 19 689 483 60 60 0 0 TT 10.226676 34 0 945 0 KEEP - Gm10510 YES AA_3 chr17 19085034 19085034 A T exonic Vmn2r97 stoploss SNV NM_001104549:c.A2585T:p.X862L exonic Vmn2r97 stoploss SNV uc009vbc.1:c.A2585T:p.X862L exonic ENSMUSG00000091491 stoploss SNV ENSMUST00000168710:c.A2585T:p.X862L 17qA3.2 "Score=0.906397;Name=No.65454,chr17:18717421" NA chr17 19085034 TATxGTT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 108 8 1 34.751364 0.4375 0.02 -0.306903 18 14 508 376 60 60 0 0 AA 20.755067 69 0 1932 0 KEEP + Vmn2r97 YES AA_3 chr17 20677948 20677948 T A exonic Vmn2r109 nonsynonymous SNV NM_001104571:c.A2110T:p.T704S exonic Vmn2r109 nonsynonymous SNV uc009vbm.1:c.A2110T:p.T704S exonic ENSMUSG00000090572 nonsynonymous SNV ENSMUST00000167093:c.A2110T:p.T704S 17qA3.2 NA NA chr17 20677948 GGGxACA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 221 1 29 112.190383 0.545455 0.02 1.020173 35 42 893 1152 60 60 0 0 TT 31.30842 108 1 2792 10 KEEP - Vmn2r109 YES AA_3 chr17 24890423 24890423 T A exonic Hs3st6 nonsynonymous SNV NM_001012402:c.T393A:p.D131E exonic Hs3st6 nonsynonymous SNV uc008ayj.1:c.T393A:p.D131E exonic ENSMUSG00000039628 nonsynonymous SNV ENSMUST00000044922:c.T393A:p.D131E 17qA3.3 NA NA chr17 24890423 TGAxCGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 313 2 0 130.83253 0.473214 0.02 2.401169 59 53 1546 1393 60 60 0 0 TT 44.848158 150 0 3976 0 KEEP + Hs3st6 YES AA_3 chr17 25446369 25446369 T A exonic Prss28 nonsynonymous SNV NM_053259:c.T20A:p.L7Q exonic Prss28 nonsynonymous SNV uc008ban.1:c.T20A:p.L7Q exonic ENSMUSG00000024171 nonsynonymous SNV ENSMUST00000015267:c.T20A:p.L7Q 17qA3.3 NA NA chr17 25446369 TCCxGGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 355 3 0 144.884258 0.4 0.02 2.20856 87 58 2388 1596 60 60 0 0 TT 45.100343 150 0 4120 0 KEEP + Prss28 YES AA_3 chr17 27239850 27239850 C G exonic Itpr3 synonymous SNV NM_080553:c.C3255G:p.R1085R exonic Itpr3 synonymous SNV uc008bfi.2:c.C3255G:p.R1085R exonic ENSMUSG00000042644 synonymous SNV ENSMUST00000049308:c.C3255G:p.R1085R 17qA3.3 NA NA chr17 27239850 GCGxCAG C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 71 0 0 27.087246 0.314286 0.02 -0.306916 24 11 669 313 60 60 0 0 CC 8.073405 27 0 722 0 KEEP + Itpr3 NO AA_3 chr17 29020441 29020441 T A exonic Pnpla1 nonsynonymous SNV NM_001034885:c.T1486A:p.L496I exonic Pnpla1 nonsynonymous SNV uc008brt.1:c.T1486A:p.L496I exonic ENSMUSG00000043286 nonsynonymous SNV ENSMUST00000056866:c.T1486A:p.L496I 17qA3.3 NA NA chr17 29020441 GCCxTAT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 243 0 0 81.538908 0.464789 0.02 0.90478 38 33 1045 871 60 60 0 0 TT 36.092856 120 0 3325 0 KEEP + Pnpla1 YES AA_3 chr17 29039713 29039713 C A intronic 4930539E08Rik NA NA intronic 4930539E08Rik NA NA intronic ENSMUSG00000048905 NA NA 17qA3.3 NA NA chr17 29039713 CTGxTCA C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990962 0.990964 0.999998 110 1 0 80.21548 0.5 0.02 1.151566 31 31 880 841 60 60 0 0 CC 9.925621 33 0 917 0 KEEP - 4930539E08Rik NO AA_3 chr17 31245423 31245423 G A intronic Abcg1 NA NA intronic Abcg1 NA NA intronic ENSMUSG00000024030 NA NA 17qA3.3 NA NA chr17 31245423 GGAxAGG G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.99986 51 0 0 21.436941 0.3 0.02 -0.263025 21 9 582 251 60 60 0 0 GG 5.715905 19 0 547 0 KEEP + Abcg1 NO AA_3 chr17 33783639 33783639 C G intronic Hnrnpm NA NA UTR3 Hnrnpm NA NA UTR3 ENSMUSG00000059208 NA NA 17qB1 NA NA chr17 33783639 CATxAGG C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423459 0.423478 0.999957 50 0 0 8.969988 0.190476 0.02 -0.184132 17 4 481 115 60 60 0 0 CC 7.821709 26 0 750 0 KEEP - Hnrnpm NO AA_3 chr17 37746767 37746767 C A exonic Olfr115 nonsynonymous SNV NM_001011753:c.G934T:p.V312F exonic Olfr115 nonsynonymous SNV uc008cng.2:c.G934T:p.V312F exonic ENSMUSG00000092413 nonsynonymous SNV ENSMUST00000173118:c.G934T:p.V312F 17qB1 NA NA chr17 37746767 AAAxAGT C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 155 2 0 12.88373 0.088608 0.02 1.002458 72 7 2026 198 60 60 0 0 CC 16.543475 55 0 1538 0 KEEP - Olfr115 NO AA_3 chr17 57039475 57039475 C G exonic Mllt1 nonsynonymous SNV NM_022328:c.G791C:p.G264A exonic Mllt1 nonsynonymous SNV uc008ddk.1:c.G791C:p.G264A exonic ENSMUSG00000024212 nonsynonymous SNV ENSMUST00000025053:c.G791C:p.G264A 17qD NA NA chr17 57039475 ACCxCCT C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 357 3 0 20.409031 0.067708 0.02 3.402111 179 13 5017 348 60 60 0 0 CC 39.381332 131 0 3609 0 KEEP - Mllt1 NO AA_3 chr17 74845456 74845456 A T exonic Nlrc4 nonsynonymous SNV NM_001033367:c.T1271A:p.I424K exonic Nlrc4 nonsynonymous SNV uc012axe.1:c.T1229A:p.I410K exonic ENSMUSG00000039193 nonsynonymous SNV ENSMUST00000052124:c.T1271A:p.I424K 17qE2 NA NA chr17 74845456 CCTxTTG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 116 0 0 70.652387 0.411765 0.02 1.099093 40 28 1018 773 60 60 0 0 AA 12.91839 43 0 1128 0 KEEP - Nlrc4 YES AA_3 chr17 79083581 79083581 T A exonic Strn synonymous SNV NM_011500:c.A648T:p.T216T exonic Strn synonymous SNV uc008doz.1:c.A189T:p.T63T exonic ENSMUSG00000024077 synonymous SNV ENSMUST00000024881:c.A189T:p.T63T 17qE3 NA NA chr17 79083581 TGCxGTC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 95 2 0 51.794401 0.5 0.02 -0.368278 20 20 562 543 60 60 0 0 TT 12.024407 40 0 1103 0 KEEP - Strn YES AA_3 chr17 80112799 80112799 G C exonic Cyp1b1 nonsynonymous SNV NM_009994:c.C853G:p.P285A exonic Cyp1b1 nonsynonymous SNV uc008dqb.1:c.C853G:p.P285A exonic ENSMUSG00000024087 nonsynonymous SNV ENSMUST00000024894:c.C853G:p.P285A 17qE3 NA NA chr17 80112799 CGGxCAC G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780965 0.78106 0.999879 66 0 0 9.924576 0.147059 0.02 -0.29815 29 5 816 137 60 60 0 0 GG 6.611628 22 0 599 0 KEEP - Cyp1b1 NO AA_3 chr17 87535611 87535611 A T UTR3 Socs5 NA NA UTR3 Socs5 NA NA UTR3 ENSMUSG00000037104 NA NA 17qE4 NA NA chr17 87535611 GTCxCTT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 172 2 0 95.147726 0.473684 0.02 1.029027 40 36 1041 1008 60 60 0 0 AA 24.656673 82 0 2212 0 KEEP + Socs5 YES AA_3 chr17 91947902 91947902 T A intergenic "Nrxn1(dist=455760),Adcyap1(dist=1650860)" NA NA intergenic "Nrxn1(dist=455760),AB352058(dist=491392)" NA NA intergenic "ENSMUSG00000043346(dist=310796),ENSMUSG00000087425(dist=8565)" NA NA 17qE5 "Score=0.992815;Name=No.68093,chr7:141075780" NA chr17 91947902 TACxATC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 83 0 0 43.022026 0.459459 0.02 -0.32439 20 17 532 460 60 60 0 0 TT 11.127244 37 0 1003 0 KEEP NA Nrxn1 YES AA_3 chr18 12700967 12700967 T G intronic Lama3 NA NA intronic Lama3 NA NA intronic ENSMUSG00000024421 NA NA 18qA1 NA NA chr18 12700967 AACxTAC T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 105 0 0 20.733884 0.227273 0.02 -0.385783 34 10 941 262 60 60 0 0 TT 14.095378 47 0 1278 0 KEEP + Lama3 NO AA_3 chr18 37090129 37090129 T A exonic Pcdha1 nonsynonymous SNV NM_054072:c.T191A:p.L64Q exonic Pcdha1 nonsynonymous SNV uc008eot.2:c.T191A:p.L64Q exonic ENSMUSG00000007440 nonsynonymous SNV ENSMUST00000070797:c.T191A:p.L64Q 18qB2 NA NA chr18 37090129 GCCxATT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 160 2 0 67.417789 0.405797 0.02 1.081514 41 28 1100 743 60 60 0 0 TT 23.457999 78 0 2136 0 KEEP + Pcdha1 YES AA_3 chr18 37135356 37135356 A C exonic Pcdha7 nonsynonymous SNV NM_009957:c.A1779C:p.K593N exonic Pcdha7 nonsynonymous SNV uc008epc.2:c.A1779C:p.K593N intronic ENSMUSG00000007440 NA NA 18qB2 NA NA chr18 37135356 GAAxGTC A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 114 0 0 27.560114 0.272727 0.02 1.115257 40 15 1106 344 60 60 0 0 AA 14.434825 48 0 1316 0 KEEP + Pcdha7 NO AA_3 chr18 37165955 37165955 A T exonic Pcdha10 nonsynonymous SNV NM_009961:c.A982T:p.S328C exonic Pcdha10 nonsynonymous SNV uc008epf.2:c.A982T:p.S328C exonic ENSMUSG00000007440 nonsynonymous SNV ENSMUST00000115658:c.A982T:p.S328C 18qB3 NA NA chr18 37165955 GGTxGTC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 97 0 0 83.243427 0.607843 0.02 1.248089 20 31 540 833 60 60 0 0 AA 12.029259 40 0 1088 0 KEEP + Pcdha10 YES AA_3 chr18 38443216 38443216 T A exonic Pcdh12 nonsynonymous SNV NM_017378:c.A509T:p.Y170F exonic Pcdh12 nonsynonymous SNV uc008esb.1:c.A509T:p.Y170F exonic ENSMUSG00000024440 nonsynonymous SNV ENSMUST00000025311:c.A509T:p.Y170F 18qB3 NA NA chr18 38443216 GAAxATA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 128 0 0 44.213846 0.292308 0.02 1.125403 46 19 1183 522 60 60 0 0 TT 15.334052 51 0 1341 0 KEEP - Pcdh12 YES AA_3 chr18 61119602 61119602 T C intronic Camk2a NA NA intronic Camk2a NA NA intronic ENSMUSG00000024617 NA NA 18qE1 NA NA chr18 61119602 CTGxCTA T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 87 0 0 25.218694 0.289474 0.02 -0.33303 27 11 701 299 60 60 0 0 TT 11.72739 39 0 1047 0 KEEP + Camk2a NO AA_3 chr18 67601984 67601984 T A exonic Afg3l2 nonsynonymous SNV NM_027130:c.A272T:p.E91V exonic Afg3l2 nonsynonymous SNV uc012bei.1:c.A37T:p.R13W exonic ENSMUSG00000024527 nonsynonymous SNV ENSMUST00000025408:c.A272T:p.E91V 18qE1 NA NA chr18 67601984 GCCxCCT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 206 0 0 76.622399 0.484375 0.02 1.03625 33 31 909 811 60 60 0 0 TT 28.274044 94 0 2637 0 KEEP - Afg3l2 YES AA_3 chr18 67601999 67601999 G C exonic Afg3l2 nonsynonymous SNV NM_027130:c.C257G:p.A86G exonic Afg3l2 nonsynonymous SNV uc012bei.1:c.C22G:p.P8A exonic ENSMUSG00000024527 nonsynonymous SNV ENSMUST00000025408:c.C257G:p.A86G 18qE1 NA NA chr18 67601999 CTGxCCT G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 194 0 0 32.291379 0.222222 0.02 1.241069 49 14 1384 401 60 60 0 0 GG 26.468909 88 0 2442 0 KEEP - Afg3l2 NO AA_3 chr18 67960281 67960281 C G intronic Cep192 NA NA intronic Cep192 NA NA intronic ENSMUSG00000024542 NA NA 18qE1 NA NA chr18 67960281 CCCxCTC C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 188 1 0 33.095138 0.314815 0.02 1.320201 37 17 1043 396 60 60 0 0 CC 31.583275 105 0 2933 0 KEEP + Cep192 NO AA_3 chr18 89590400 89590400 T A exonic Dok6 nonsynonymous SNV NM_001039173:c.A705T:p.E235D exonic Dok6 nonsynonymous SNV uc008fvr.1:c.A705T:p.E235D exonic ENSMUSG00000073514 nonsynonymous SNV ENSMUST00000097495:c.A705T:p.E235D 18qE4 NA NA chr18 89590400 TCTxTCG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999997 74 2 0 7.099017 0.133333 0.02 -0.263034 26 4 715 103 60 60 0 0 TT 9.611827 32 0 866 0 KEEP - Dok6 YES AA_3 chr19 20459260 20459260 T A UTR5 Anxa1 NA NA UTR5 Anxa1 NA NA UTR5 ENSMUSG00000024659 NA NA 19qB NA NA chr19 20459260 AAGxATC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999998 66 0 0 98.092468 1 0.02 -0.263074 0 30 0 838 0 60 0 0 TT 10.22435 34 0 909 0 KEEP - Anxa1 YES AA_3 chr19 48758138 48758138 T C exonic Sorcs3 synonymous SNV NM_025696:c.T1285C:p.L429L exonic Sorcs3 synonymous SNV uc008hvx.1:c.T1285C:p.L429L exonic ENSMUSG00000063434 synonymous SNV ENSMUST00000078880:c.T1285C:p.L429L 19qD1 NA NA chr19 48758138 TCCxTGC T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 145 0 0 189.688337 1 0.02 1.392278 0 56 0 1630 0 60 0 0 TT 22.839937 76 0 2099 0 KEEP + Sorcs3 NO AA_3 chr19 6403401 6403401 A T intronic Rasgrp2 NA NA intronic Rasgrp2 NA NA intronic ENSMUSG00000032946 NA NA 19qA NA NA chr19 6403401 GAGxGGA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 128 4 0 104.381168 1 0.02 -0.315567 0 34 0 882 0 60 0 0 AA 20.431218 68 0 1846 0 KEEP + Rasgrp2 YES AA_3 chr19 7002485 7002485 A T exonic Kcnk4 stopgain SNV NM_008431:c.T476A:p.L159X exonic Kcnk4 stopgain SNV uc008gjj.1:c.T476A:p.L159X exonic ENSMUSG00000024957 stopgain SNV ENSMUST00000025908:c.T476A:p.L159X 19qA NA NA chr19 7002485 ACCxAGA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227586 0.229173 0.993072 26 0 0 47.541146 1 0.02 -0.131502 0 15 0 404 0 60 0 0 AA 3.305882 11 0 286 0 KEEP - Kcnk4 YES AA_3 chr19 9025454 9025454 C A exonic Mta2 synonymous SNV NM_011842:c.C1626A:p.I542I exonic Mta2 synonymous SNV uc008gof.1:c.C1626A:p.I542I exonic ENSMUSG00000071646 synonymous SNV ENSMUST00000096240:c.C1626A:p.I542I 19qA NA NA chr19 9025454 AATxAAC C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 167 0 0 7.878882 0.074627 0.02 0.912574 62 5 1766 132 60 60 0 0 CC 20.612642 72 1 2064 9 KEEP + Mta2 NO AA_3 chr1 108897388 108897388 C T exonic Serpinb13 nonsynonymous SNV NM_172852:c.C1160T:p.S387F exonic Serpinb13 nonsynonymous SNV uc007chf.1:c.C1160T:p.S387F exonic ENSMUSG00000048775 nonsynonymous SNV ENSMUST00000165342:c.C527T:p.S176F 1qE2.1 NA NA chr1 108897388 TTTxTTC C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 109 0 0 9.334378 0.1 0.02 -0.438505 45 5 1309 140 60 60 0 0 CC 13.775562 46 0 1288 0 KEEP + Serpinb13 NO AA_3 chr1 120553124 120553124 T A intronic Tfcp2l1 NA NA intronic Tcfcp2l1 NA NA intronic ENSMUSG00000026380 NA NA 1qE2.3 NA NA chr1 120553124 CCCxGGT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 88 0 0 66.170542 0.785714 0.02 -0.245539 6 22 166 620 60 60 0 0 TT 15.939039 53 0 1441 0 KEEP + Tfcp2l1 YES AA_3 chr1 122387432 122387432 T A intronic Marco NA NA intronic Marco NA NA intronic ENSMUSG00000026390 NA NA 1qE2.3 NA NA chr1 122387432 CTCxGGT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 105 0 0 57.431383 0.769231 0.02 -0.227971 6 20 167 540 60 60 0 0 TT 19.536541 65 0 1787 0 KEEP - Marco YES AA_3 chr1 135631613 135631613 T G intronic Atp2b4 NA NA intronic Atp2b4 NA NA intronic ENSMUSG00000026463 NA NA 1qE4 NA NA chr1 135631613 GGCxTAA T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 49 0 0 8.402496 0.25 0.02 -0.1753 15 5 415 109 60 60 0 0 TT 6.910453 23 0 621 0 KEEP - Atp2b4 NO AA_3 chr1 137063923 137063923 G T exonic Gpr37l1 synonymous SNV NM_134438:c.C159A:p.P53P exonic Gpr37l1 synonymous SNV uc007csv.2:c.C159A:p.P53P exonic ENSMUSG00000026424 synonymous SNV ENSMUST00000027682:c.C159A:p.P53P 1qE4 NA NA chr1 137063923 CTTxGGC G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 100 0 0 18.917612 0.204545 0.02 -0.394243 35 9 982 243 60 60 0 0 GG 12.629319 42 0 1172 0 KEEP - Gpr37l1 NO AA_3 chr1 141670646 141670646 A T exonic Gm4788 synonymous SNV NM_001029977:c.T306A:p.S102S exonic EG214403 synonymous SNV uc007cwn.2:c.T306A:p.S102S exonic ENSMUSG00000070594 synonymous SNV ENSMUST00000027612:c.T306A:p.S102S 1qF "Score=0.932584;Name=No.437,chr1:141715511" NA chr1 141670646 TGCxGAT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 154 0 0 33.062762 0.241935 0.02 1.151565 47 15 1313 408 60 60 0 0 AA 21.958157 73 0 2044 0 KEEP - Gm4788 YES AA_3 chr1 158371571 158371571 G A exonic Soat1 nonsynonymous SNV NM_009230:c.C539T:p.A180V exonic Soat1 nonsynonymous SNV uc007dcj.1:c.C539T:p.A180V exonic ENSMUSG00000026600 nonsynonymous SNV ENSMUST00000051396:c.C539T:p.A180V 1qG3 NA NA chr1 158371571 ATGxCCC G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 66 0 0 13.8622 0.269231 0.02 -0.227888 19 7 533 171 60 60 0 0 GG 10.226025 34 0 934 0 KEEP - Soat1 NO AA_3 chr1 16336095 16336095 A T intronic Stau2 NA NA intronic Stau2 NA NA intronic ENSMUSG00000025920 NA NA 1qA3 NA NA chr1 16336095 GCTxTGA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.2608 0.260965 0.999366 41 0 0 39.446325 0.8125 0.02 -0.140298 3 13 77 366 60 60 0 0 AA 5.112177 17 0 455 0 KEEP - Stau2 YES AA_3 chr1 164780254 164780254 A T exonic Fmo1 nonsynonymous SNV NM_010231:c.T423A:p.D141E exonic Fmo1 nonsynonymous SNV uc007dgx.1:c.T423A:p.D141E exonic ENSMUSG00000040181 nonsynonymous SNV ENSMUST00000131058:c.T423A:p.D141E 1qH2.1 NA NA chr1 164780254 AGCxTCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 36 0 0 41.234276 0.928571 0.02 -0.122768 1 13 26 366 60 60 0 0 AA 4.511214 15 0 407 0 KEEP - Fmo1 YES AA_3 chr1 164977987 164977987 A T exonic Mroh9 stopgain SNV NM_030071:c.T1473A:p.Y491X exonic 4921528O07Rik stopgain SNV uc007dhg.2:c.T1473A:p.Y491X exonic ENSMUSG00000071890 stopgain SNV ENSMUST00000096608:c.T1473A:p.Y491X 1qH2.1 NA NA chr1 164977987 CCCxTAC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 99 0 0 16.203975 0.25 0.02 -0.245499 21 7 559 197 60 60 0 0 AA 17.137686 57 0 1519 0 KEEP - Mroh9 YES AA_3 chr1 168031059 168031059 A G exonic Dusp27 nonsynonymous SNV NM_001033344:c.T1114C:p.S372P exonic Dusp27 nonsynonymous SNV uc007dkh.2:c.T1114C:p.S372P exonic ENSMUSG00000026564 nonsynonymous SNV ENSMUST00000085992:c.T1114C:p.S372P 1qH2.3 NA NA chr1 168031059 AGGxCAT A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 81 0 0 27.154564 0.323529 0.02 -0.29811 23 11 611 312 60 60 0 0 AA 11.428732 38 0 1039 0 KEEP - Dusp27 NO AA_3 chr1 174490872 174490872 T A exonic Vsig8 nonsynonymous SNV NM_177723:c.T611A:p.L204H exonic Vsig8 nonsynonymous SNV uc007dqt.2:c.T275A:p.L92H exonic ENSMUSG00000049598 nonsynonymous SNV ENSMUST00000061835:c.T611A:p.L204H 1qH3 NA NA chr1 174490872 AGCxTTC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 72 0 0 36.662942 0.666667 0.02 -0.1841 7 14 197 358 60 60 0 0 TT 12.322671 41 0 1129 0 KEEP + Vsig8 YES AA_3 chr1 175403844 175403844 T G intergenic "Aim2(dist=7677),BC094916(dist=47598)" NA NA intergenic "Aim2(dist=7677),BC094916(dist=47598)" NA NA exonic ENSMUSG00000037849 nonsynonymous SNV ENSMUST00000037976:c.A340C:p.N114H 1qH3 "Score=0.911254;Name=No.497,chr1:175629981" NA chr1 175403844 CGTxGGC T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 91 0 0 7.478823 0.095238 0.02 -0.368281 38 4 1046 113 60 60 0 0 TT 12.632602 42 0 1160 0 KEEP NA Aim2 NO AA_3 chr1 183886630 183886630 C A exonic Enah nonsynonymous SNV NM_001083120:c.G244T:p.D82Y exonic Enah nonsynonymous SNV uc007dxp.1:c.G244T:p.D82Y exonic ENSMUSG00000022995 nonsynonymous SNV ENSMUST00000078719:c.G244T:p.D82Y 1qH5 NA NA chr1 183886630 CATxCCT C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.69366 0.693668 0.999988 62 0 0 70.134337 0.833333 0.02 -0.262986 5 25 142 641 60 60 0 0 CC 8.122173 27 0 769 0 KEEP - Enah NO AA_3 chr1 184904941 184904941 A T exonic Tlr5 nonsynonymous SNV NM_016928:c.A1678T:p.S560C exonic Tlr5 nonsynonymous SNV uc007dyl.1:c.A1678T:p.S560C exonic ENSMUSG00000079164 nonsynonymous SNV ENSMUST00000168453:c.A1636T:p.S546C 1qH5 NA NA chr1 184904941 GGCxGTT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 154 0 0 150.771841 0.764706 0.02 1.098969 16 52 448 1421 60 60 0 0 AA 20.443075 68 0 1857 0 KEEP + Tlr5 YES AA_3 chr1 191709174 191709174 T C intronic Smyd2 NA NA intronic Smyd2 NA NA intronic ENSMUSG00000026603 NA NA 1qH6 NA NA chr1 191709174 AGGxTAT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 112 0 0 7.580363 0.095238 0.02 -0.36792 38 4 970 114 60 60 0 0 TT 15.326897 51 0 1358 0 KEEP - Smyd2 NO AA_3 chr1 195154079 195154079 C T intronic Lamb3 NA NA intronic Lamb3 NA NA intronic ENSMUSG00000026639 NA NA 1qH6 NA NA chr1 195154079 CTCxTCT C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 366 4 0 45.092571 0.182609 0.02 2.38204 94 21 2670 588 60 60 0 0 CC 57.149945 190 0 5340 0 KEEP + Lamb3 NO AA_3 chr1 21283606 21283606 G T ncRNA_exonic Gm4956 NA NA UTR5 Gm4956 NA NA exonic ENSMUSG00000025936 nonsynonymous SNV ENSMUST00000082032:c.C191A:p.A64D 1qA4 NA NA chr1 21283606 GCAxCTA G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 121 2 0 18.7353 0.225 0.02 -0.350764 31 9 887 237 60 60 0 0 GG 20.154231 67 0 1895 0 KEEP - Gm4956 NO AA_3 chr1 38164479 38164479 T A exonic Rev1 nonsynonymous SNV NM_019570:c.A115T:p.N39Y exonic Rev1 nonsynonymous SNV uc007asr.1:c.A115T:p.N39Y exonic ENSMUSG00000026082 nonsynonymous SNV ENSMUST00000027251:c.A115T:p.N39Y 1qB NA NA chr1 38164479 GGTxAGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552837 0.552887 0.999909 57 0 0 19.799659 0.36 0.02 -0.219077 16 9 423 226 60 60 0 0 TT 7.218599 24 0 663 0 KEEP - Rev1 YES AA_3 chr1 38996120 38996120 A C UTR5 Nms NA NA UTR5 Nms NA NA UTR5 ENSMUSG00000067604 NA NA 1qB NA NA chr1 38996120 TCCxGAG A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 76 0 0 50.121525 0.666667 0.02 -0.262897 10 20 277 489 60 60 0 0 AA 10.828108 36 0 999 0 KEEP + Nms NO AA_3 chr1 46877414 46877414 T A exonic Slc39a10 nonsynonymous SNV NM_172653:c.A1656T:p.L552F exonic Slc39a10 nonsynonymous SNV uc007axd.1:c.A1656T:p.L552F exonic ENSMUSG00000025986 nonsynonymous SNV ENSMUST00000027131:c.A1656T:p.L552F 1qC1.1 NA NA chr1 46877414 GTTxAAC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 50 0 0 24.928514 0.642857 0.02 -0.122744 5 9 130 246 60 60 0 0 TT 9.021223 30 0 801 0 KEEP - Slc39a10 YES AA_3 chr1 53454167 53454167 A T intronic Dnah7a NA NA intergenic "Asnsd1(dist=44624),Mir1937b-2(dist=299122)" NA NA intergenic "ENSMUSG00000026095(dist=44571),ENSMUSG00000092657(dist=45948)" NA NA 1qC1.1 "Score=0.931486;Name=No.201,chr1:46837320" NA chr1 53454167 GAAxGCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 87 0 0 12.748368 0.2 0.02 -0.262884 24 6 664 164 60 60 0 0 AA 13.83593 46 0 1280 0 KEEP - Dnah7a YES AA_3 chr1 60822205 60822205 T A exonic Cd28 stopgain SNV NM_007642:c.T497A:p.L166X exonic Cd28 stopgain SNV uc007bew.2:c.T497A:p.L166X exonic ENSMUSG00000026012 stopgain SNV ENSMUST00000027165:c.T497A:p.L166X 1qC2 NA NA chr1 60822205 GCTxGCT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 82 0 0 10.618822 0.166667 0.02 -0.263062 25 5 688 141 60 60 0 0 TT 11.727569 39 0 1066 0 KEEP + Cd28 YES AA_3 chr1 65071265 65071265 T A exonic Akr1cl nonsynonymous SNV NM_027582:c.A338T:p.Y113F exonic Akr1cl nonsynonymous SNV uc007bhd.1:c.A245T:p.Y82F exonic ENSMUSG00000025955 nonsynonymous SNV ENSMUST00000162800:c.A245T:p.Y82F 1qC2 NA NA chr1 65071265 AGGxACA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.99986 39 0 0 27.922053 0.666667 0.02 -0.13151 5 10 127 273 60 60 0 0 TT 5.710943 19 0 497 0 KEEP - Akr1cl YES AA_3 chr1 66462508 66462508 A T intronic Map2 NA NA exonic Mtap2 stopgain SNV uc007bic.1:c.A3979T:p.R1327X exonic ENSMUSG00000015222 stopgain SNV ENSMUST00000114013:c.A3982T:p.R1328X 1qC3 NA NA chr1 66462508 AGGxGAC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.352705 0.353947 0.99649 36 0 0 38.317235 0.736842 0.02 -0.166547 5 14 130 364 60 60 0 0 AA 4.511845 15 0 418 0 KEEP + Map2 YES AA_3 chr1 66847701 66847701 T A exonic Kansl1l nonsynonymous SNV NM_001122738:c.A1013T:p.E338V exonic 1110028C15Rik nonsynonymous SNV uc007bim.2:c.A1013T:p.E338V exonic ENSMUSG00000026004 nonsynonymous SNV ENSMUST00000042389:c.A1013T:p.E338V 1qC3 NA NA chr1 66847701 CCCxCTT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 112 0 0 86.022656 0.738095 0.02 -0.376679 11 31 292 817 60 60 0 0 TT 15.940659 53 0 1471 0 KEEP - Kansl1l YES AA_3 chr1 69905066 69905066 A T exonic Spag16 stopgain SNV NM_001271533:c.A400T:p.K134X exonic Spag16 stopgain SNV uc007bjg.1:c.A400T:p.K134X exonic ENSMUSG00000053153 stopgain SNV ENSMUST00000065425:c.A400T:p.K134X 1qC3 NA NA chr1 69905066 AAGxAAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 59 0 0 24.796134 0.392857 0.02 -0.245473 17 11 468 277 60 60 0 0 AA 7.519728 25 0 696 0 KEEP + Spag16 YES AA_3 chr1 71149344 71149344 T A exonic Bard1 nonsynonymous SNV NM_007525:c.A38T:p.Q13L exonic Bard1 nonsynonymous SNV uc007bjm.2:c.A38T:p.Q13L exonic ENSMUSG00000026196 nonsynonymous SNV ENSMUST00000027393:c.A38T:p.Q13L 1qC3 NA NA chr1 71149344 GGCxGGT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260933 0.260965 0.999879 43 0 0 46.524374 0.9375 0.02 -0.140292 1 15 27 410 60 60 0 0 TT 6.614842 22 0 588 0 KEEP - Bard1 YES AA_3 chr1 74794585 74794585 T A exonic Prkag3 nonsynonymous SNV NM_153744:c.A87T:p.L29F exonic Prkag3 nonsynonymous SNV uc007bnc.1:c.A12T:p.L4F exonic ENSMUSG00000006542 nonsynonymous SNV ENSMUST00000113672:c.A12T:p.L4F 1qC3 NA NA chr1 74794585 TTCxAAG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 50 0 0 47.482644 0.8 0.02 -0.184134 4 16 104 442 60 60 0 0 TT 8.420167 28 0 750 0 KEEP - Prkag3 YES AA_3 chr1 74971429 74971429 A C exonic Ccdc108 nonsynonymous SNV NM_001039495:c.T1933G:p.F645V exonic Ccdc108 nonsynonymous SNV uc007bnj.1:c.T1933G:p.F645V exonic ENSMUSG00000047021 nonsynonymous SNV ENSMUST00000094844:c.T1933G:p.F645V 1qC3 NA NA chr1 74971429 GGAxGTA A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 71 0 0 44.598041 0.708333 0.02 -0.210289 7 17 182 428 60 60 0 0 AA 11.42825 38 0 1046 0 KEEP - Ccdc108 NO AA_3 chr1 75270990 75270990 G A exonic Resp18 nonsynonymous SNV NM_009049:c.C326T:p.T109M exonic Resp18 nonsynonymous SNV uc007bos.1:c.C326T:p.T109M exonic ENSMUSG00000033061 nonsynonymous SNV ENSMUST00000039534:c.C326T:p.T109M 1qC3 NA NA chr1 75270990 GCCxTGG G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 172 2 0 118.094776 0.767857 0.02 1.080246 13 43 347 1108 60 60 0 0 GG 24.94913 83 0 2142 0 KEEP - Resp18 NO AA_3 chr1 75271020 75271020 C T exonic Resp18 nonsynonymous SNV NM_009049:c.G296A:p.C99Y exonic Resp18 nonsynonymous SNV uc007bos.1:c.G296A:p.C99Y exonic ENSMUSG00000033061 nonsynonymous SNV ENSMUST00000039534:c.G296A:p.C99Y 1qC3 NA NA chr1 75271020 CTGxATG C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 134 2 0 110.29566 0.735849 0.02 1.21297 14 39 399 1050 60 60 0 0 CC 21.348475 71 0 2004 0 KEEP - Resp18 NO AA_3 chr1 75271021 75271021 A T exonic Resp18 nonsynonymous SNV NM_009049:c.T295A:p.C99S exonic Resp18 nonsynonymous SNV uc007bos.1:c.T295A:p.C99S exonic ENSMUSG00000033061 nonsynonymous SNV ENSMUST00000039534:c.T295A:p.C99S 1qC3 NA NA chr1 75271021 TGCxTGG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 133 2 0 113.498922 0.75 0.02 1.221767 13 39 332 1076 60 60 0 0 AA 21.351544 71 0 1906 0 KEEP - Resp18 YES AA_3 chr1 87482754 87482754 A T intronic Sp110 NA NA intronic Sp110 NA NA intronic ENSMUSG00000070034 NA NA 1qC5 "Score=0.981219;Name=No.623,chr1_random:1082897" NA chr1 87482754 TGTxCCC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 497 7 219 15.162435 0.184211 0.02 -0.341766 31 7 759 197 60 55 0 0 AA 95.110998 317 0 8004 0 KEEP - Sp110 YES AA_3 chr1 91041225 91041225 A T exonic Sh3bp4 stopgain SNV NM_133816:c.A1219T:p.K407X exonic Sh3bp4 stopgain SNV uc007byv.1:c.A1219T:p.K407X exonic ENSMUSG00000036206 stopgain SNV ENSMUST00000066279:c.A1219T:p.K407X 1qD NA NA chr1 91041225 AGCxAAA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 131 6 0 83.555062 0.697674 0.02 -0.376999 13 30 347 807 60 60 0 0 AA 20.452358 68 0 1873 0 KEEP + Sh3bp4 YES AA_3 chr1 91042088 91042088 A T exonic Sh3bp4 synonymous SNV NM_133816:c.A2082T:p.G694G exonic Sh3bp4 synonymous SNV uc007byv.1:c.A2082T:p.G694G exonic ENSMUSG00000036206 synonymous SNV ENSMUST00000066279:c.A2082T:p.G694G 1qD NA NA chr1 91042088 GGGxCAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 64 1 0 13.943951 0.21875 0.02 -0.280492 25 7 657 179 60 60 0 0 AA 8.722382 29 0 799 0 KEEP + Sh3bp4 YES AA_3 chr1 9536585 9536585 G C exonic Rrs1 synonymous SNV NM_021511:c.G981C:p.P327P exonic Rrs1 synonymous SNV uc007agk.2:c.G981C:p.P327P exonic ENSMUSG00000061024 synonymous SNV ENSMUST00000072079:c.G981C:p.P327P 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536585 CCCxCCG G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.999859 47 1 0 11.173073 0.227273 0.02 -0.209999 17 5 366 139 60 60 0 0 GT 4.505135 15 0 357 0 KEEP + Rrs1 NO AA_3 chr1 9536938 9536938 G T UTR3 Rrs1 NA NA UTR3 Rrs1 NA NA UTR3 ENSMUSG00000061024 NA NA 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536938 CTTxACT G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 310 10 9 21.766006 0.121212 0.02 0.818264 87 12 2522 319 60 60 0 0 GG 41.529006 148 1 4229 28 KEEP + Rrs1 NO AA_3 chr2 104081264 104081264 A T exonic D430041D05Rik nonsynonymous SNV NM_001033347:c.T1795A:p.Y599N exonic D430041D05Rik nonsynonymous SNV uc008ljr.1:c.T1795A:p.Y599N exonic ENSMUSG00000068373 nonsynonymous SNV ENSMUST00000089726:c.T1795A:p.Y599N 2qE2 NA NA chr2 104081264 GGTxGAA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 46 0 0 23.187006 0.529412 0.02 -0.149029 8 9 206 240 60 60 0 0 AA 6.917253 23 0 628 0 KEEP - D430041D05Rik YES AA_3 chr2 10636833 10636833 C T intergenic "Sfmbt2(dist=119953),Prkcq(dist=457176)" NA NA intergenic "Sfmbt2(dist=119953),Prkcq(dist=457176)" NA NA exonic ENSMUSG00000075532 nonsynonymous SNV ENSMUST00000100418:c.C40T:p.R14W 2qA1 NA NA chr2 10636833 TCAxGGT C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 152 0 0 38.596752 0.26087 0.02 0.992612 51 18 1285 472 60 60 0 0 CC 19.538232 65 0 1673 0 KEEP NA Sfmbt2 NO AA_3 chr2 111405447 111405447 A T exonic Olfr1295 synonymous SNV NM_146403:c.T153A:p.T51T exonic Olfr1295 synonymous SNV uc008lns.1:c.T153A:p.T51T exonic ENSMUSG00000074959 synonymous SNV ENSMUST00000099613:c.T153A:p.T51T 2qE3 NA NA chr2 111405447 GTCxGTG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 204 3 0 18.074186 0.135135 0.02 0.948663 64 10 1766 260 60 60 0 0 AA 30.674911 102 0 2812 0 KEEP - Olfr1295 YES AA_3 chr2 121203323 121203323 A T exonic Strc synonymous SNV NM_080459:c.T1302A:p.A434A exonic Strc synonymous SNV uc008lyw.1:c.T1302A:p.A434A exonic ENSMUSG00000033498 synonymous SNV ENSMUST00000038389:c.T1302A:p.A434A 2qE5 NA NA chr2 121203323 TACxGCT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.99986 55 0 0 49.621665 0.62069 0.02 -0.25429 11 18 306 494 60 60 0 0 AA 5.714657 19 0 524 0 KEEP - Strc YES AA_3 chr2 121336230 121336230 A G intronic Wdr76 NA NA intronic Wdr76 NA NA intronic ENSMUSG00000027242 NA NA 2qE5 NA NA chr2 121336230 AGCxTAG A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 32 0 0 12.273436 0.4 0.02 -0.148987 9 6 237 138 60 60 0 0 AA 4.509344 15 0 397 0 KEEP + Wdr76 NO AA_3 chr2 122267565 122267565 T A exonic Slc28a2 nonsynonymous SNV NM_172980:c.T151A:p.L51M exonic Slc28a2 nonsynonymous SNV uc008mat.1:c.T151A:p.L51M exonic ENSMUSG00000027219 nonsynonymous SNV ENSMUST00000110524:c.T151A:p.L51M 2qE5 "Score=0.951648;Name=No.75337,chr2:122309009" NA chr2 122267565 GGCxTGG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 120 2 0 89.277737 0.641509 0.02 1.123923 19 34 533 881 60 60 0 0 TT 15.039139 50 0 1389 0 KEEP + Slc28a2 YES AA_3 chr2 125177674 125177674 A T intronic Fbn1 NA NA intronic Fbn1 NA NA intronic ENSMUSG00000027204 NA NA 2qF1 NA NA chr2 125177674 GCTxTTT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.518353 0.522161 0.992708 36 0 0 38.698391 0.583333 0.02 -0.210421 10 14 256 391 60 60 0 0 AA 3.007087 10 0 266 0 KEEP - Fbn1 YES AA_3 chr2 125657975 125657975 T C exonic Cops2 nonsynonymous SNV NM_009939:c.A1286G:p.N429S exonic Cops2 nonsynonymous SNV uc008mdd.1:c.A914G:p.N305S exonic ENSMUSG00000027206 nonsynonymous SNV ENSMUST00000028635:c.A1286G:p.N429S 2qF1 NA NA chr2 125657975 TGGxTGG T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888864 0.888875 0.999988 76 0 0 10.046934 0.125 0.02 -0.359375 35 5 930 142 60 60 0 0 TT 8.120404 27 0 737 0 KEEP - Cops2 NO AA_3 chr2 130501533 130501533 A G intronic Itpa NA NA exonic Itpa nonsynonymous SNV uc008mjt.1:c.A464G:p.E155G intronic ENSMUSG00000074797 NA NA 2qF1 NA NA chr2 130501533 TTGxGCA A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 72 2 0 13.554814 0.222222 0.02 -0.236674 21 6 572 169 60 60 0 0 AA 9.324668 31 0 869 0 KEEP + Itpa NO AA_3 chr2 135161226 135161226 A T exonic Plcb1 stopgain SNV NM_001145830:c.A1741T:p.K581X exonic Plcb1 stopgain SNV uc008mnx.2:c.A1741T:p.K581X exonic ENSMUSG00000051177 stopgain SNV ENSMUST00000163224:c.A973T:p.K325X 2qF3 NA NA chr2 135161226 ACAxAGT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800133 0.800245 0.99986 64 0 0 58.255135 0.628571 0.02 -0.306875 13 22 369 578 60 60 0 0 AA 5.71518 19 0 532 0 KEEP + Plcb1 YES AA_3 chr2 135736011 135736011 A C intronic Plcb4 NA NA intronic Plcb4 NA NA intronic ENSMUSG00000039943 NA NA 2qF3 NA NA chr2 135736011 ATAxGTG A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 84 0 0 16.648221 0.232558 0.02 -0.385695 33 10 924 220 70 60 0 0 AA 9.324449 31 0 863 0 KEEP + Plcb4 NO AA_3 chr2 146237779 146237779 T A intronic Ralgapa2 NA NA intronic Ralgapa2 NA NA intronic ENSMUSG00000037110 NA NA 2qG1 NA NA chr2 146237779 AAAxACC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.796519 0.800245 0.995343 54 0 0 28.954039 0.342857 0.02 -0.30684 23 12 594 330 60 60 0 0 TT 4.208347 14 0 364 0 KEEP - Ralgapa2 YES AA_3 chr2 153226030 153226030 A T exonic Asxl1 synonymous SNV NM_001039939:c.A2766T:p.A922A exonic Asxl1 synonymous SNV uc008nhs.1:c.A2766T:p.A922A exonic ENSMUSG00000042548 synonymous SNV ENSMUST00000036193:c.A2766T:p.A922A 2qH1 NA NA chr2 153226030 TGCxGCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.579219 0.58293 0.993634 40 0 0 27.954339 0.423077 0.02 -0.227968 15 11 403 304 60 60 0 0 AA 3.609305 12 0 331 0 KEEP + Asxl1 YES AA_3 chr2 153973052 153973052 A T exonic Bpifa1 nonsynonymous SNV NM_011126:c.A725T:p.Q242L exonic Plunc nonsynonymous SNV uc008niu.2:c.A725T:p.Q242L exonic ENSMUSG00000027483 nonsynonymous SNV ENSMUST00000028985:c.A725T:p.Q242L 2qH1 NA NA chr2 153973052 TCCxGGG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 209 2 0 179.871576 0.703297 0.02 0.986857 27 64 752 1734 60 60 0 0 AA 25.857523 86 0 2384 0 KEEP + Bpifa1 YES AA_3 chr2 156322193 156322193 T A intronic Epb4.1l1 NA NA intronic Epb4.1l1 NA NA intronic ENSMUSG00000027624 NA NA 2qH1 NA NA chr2 156322193 TGCxTCT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 174 0 0 7.648813 0.073529 0.02 0.8953 63 5 1738 130 60 60 0 0 TT 20.085387 76 1 2132 26 KEEP + Epb4.1l1 YES AA_3 chr2 157818734 157818734 T A exonic Tti1 nonsynonymous SNV NM_029282:c.A3041T:p.Q1014L exonic Tti1 nonsynonymous SNV uc008npj.1:c.A3041T:p.Q1014L exonic ENSMUSG00000027650 nonsynonymous SNV ENSMUST00000109522:c.A3041T:p.Q1014L 2qH1 NA NA chr2 157818734 GGCxGTT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 96 0 0 28.633754 0.315789 0.02 -0.33321 26 12 718 332 60 60 0 0 TT 12.028774 40 0 1095 0 KEEP - Tti1 YES AA_3 chr2 163433374 163433374 G C exonic Ttpal nonsynonymous SNV NM_029512:c.G412C:p.D138H exonic Ttpal nonsynonymous SNV uc008ntc.1:c.G412C:p.D138H exonic ENSMUSG00000017679 nonsynonymous SNV ENSMUST00000109405:c.G412C:p.D138H 2qH3 NA NA chr2 163433374 ACGxACC G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227888 0.229173 0.994391 34 0 0 12.339179 0.333333 0.02 -0.131534 10 5 281 141 60 60 0 0 GG 3.910603 13 0 369 0 KEEP + Ttpal NO AA_3 chr2 164800450 164800450 T A exonic Slc12a5 nonsynonymous SNV NM_020333:c.T323A:p.L108Q exonic Slc12a5 nonsynonymous SNV uc008nwu.2:c.T323A:p.L108Q exonic ENSMUSG00000017740 nonsynonymous SNV ENSMUST00000017884:c.T323A:p.L108Q 2qH3 NA NA chr2 164800450 GCCxGCA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 155 1 0 60.706521 0.362319 0.02 1.090219 44 25 1198 684 60 60 0 0 TT 20.144851 67 0 1841 0 KEEP + Slc12a5 YES AA_3 chr2 168575633 168575633 T A exonic Sall4 nonsynonymous SNV NM_201396:c.A733T:p.S245C exonic Sall4 nonsynonymous SNV uc008obh.1:c.A733T:p.S245C exonic ENSMUSG00000027547 nonsynonymous SNV ENSMUST00000075044:c.A733T:p.S245C 2qH3 NA NA chr2 168575633 TGCxCAC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 97 0 0 15.303754 0.156863 0.02 1.150154 43 8 1197 211 60 60 0 0 TT 11.994816 40 0 1067 0 KEEP - Sall4 YES AA_3 chr2 172250079 172250079 T A intronic Cass4 NA NA intronic Cass4 NA NA intronic ENSMUSG00000074570 NA NA 2qH3 NA NA chr2 172250079 TCCxACT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 147 0 0 42.137646 0.339623 0.02 1.132623 35 18 972 483 60 60 0 0 TT 22.859809 76 0 2120 0 KEEP + Cass4 YES AA_3 chr2 177679552 177679552 T A UTR3 Gm14326 NA NA UTR3 Gm14326 NA NA intronic ENSMUSG00000078862 NA NA 2qH4 "Score=0.981448;Name=No.75645,chr2:174921069" NA chr2 177679552 CTCxTTT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 136 0 6 54.713972 0.365079 0.02 1.044927 40 23 1124 617 60 60 0 0 TT 16.239514 54 0 1480 0 KEEP - Gm14326 YES AA_3 chr2 180665959 180665959 T A intronic Birc7 NA NA intronic Birc7 NA NA intronic ENSMUSG00000038840 NA NA 2qH4 NA NA chr2 180665959 TTCxCCA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 228 0 0 64.798093 0.329545 0.02 0.923846 59 29 1655 752 60 60 0 0 TT 32.185147 107 0 2995 0 KEEP + Birc7 YES AA_3 chr2 180931067 180931067 A T exonic Ptk6 nonsynonymous SNV NM_009184:c.T1107A:p.D369E exonic Ptk6 nonsynonymous SNV uc008olk.1:c.T1107A:p.D369E exonic ENSMUSG00000038751 nonsynonymous SNV ENSMUST00000016511:c.T1107A:p.D369E 2qH4 NA NA chr2 180931067 GACxTCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760877 0.760887 0.999988 66 0 0 73.381712 0.757576 0.02 -0.28936 8 25 213 694 60 60 0 0 AA 8.11955 27 0 725 0 KEEP - Ptk6 YES AA_3 chr2 181732240 181732240 C T exonic Gm14496 nonsynonymous SNV NM_001205282:c.C1417T:p.L473F intergenic "Polr3k(dist=126709),NONE(dist=NONE)" NA NA intergenic "ENSMUSG00000053277(dist=1105),NONE(dist=NONE)" NA NA 2qH4 NA NA chr2 181732240 GGCxTTG C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 405 39 12 15.409727 0.069231 0.02 2.20656 121 9 3449 253 60 40 0 0 CC 68.283293 227 0 6408 0 KEEP + Gm14496 NO AA_3 chr2 20703474 20703474 A C exonic Etl4 nonsynonymous SNV NM_001177631:c.A2253C:p.E751D exonic Etl4 nonsynonymous SNV uc008ims.1:c.A1407C:p.E469D exonic ENSMUSG00000036617 nonsynonymous SNV ENSMUST00000114606:c.A1407C:p.E469D 2qA3 NA NA chr2 20703474 AGAxGTT A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353898 0.353947 0.999863 45 0 0 16.007123 0.368421 0.02 -0.166586 12 7 336 181 60 60 0 0 AA 6.016051 20 0 562 0 KEEP + Etl4 NO AA_3 chr2 24149285 24149285 G A exonic Il1f10 nonsynonymous SNV NM_153077:c.G455A:p.R152Q exonic Il1f10 nonsynonymous SNV uc008iou.1:c.G455A:p.R152Q exonic ENSMUSG00000046845 nonsynonymous SNV ENSMUST00000058056:c.G455A:p.R152Q 2qA3 NA NA chr2 24149285 GTCxGTA G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.57966 0.58293 0.994391 43 0 0 19.148256 0.307692 0.02 -0.227973 18 8 492 223 60 60 0 0 GG 3.90988 13 0 359 0 KEEP + Il1f10 NO AA_3 chr2 25128599 25128599 C T exonic Anapc2 synonymous SNV NM_175300:c.C327T:p.A109A exonic Anapc2 synonymous SNV uc008ird.2:c.C327T:p.A109A exonic ENSMUSG00000026965 synonymous SNV ENSMUST00000028341:c.C327T:p.A109A 2qA3 NA NA chr2 25128599 TGCxATC C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 107 0 0 27.782539 0.245283 0.02 1.23046 40 13 1150 344 60 60 0 0 CC 14.438381 48 0 1355 0 KEEP + Anapc2 NO AA_3 chr2 25347995 25347995 A T exonic Lcn12 nonsynonymous SNV NM_029958:c.T284A:p.L95Q exonic Lcn12 nonsynonymous SNV uc008isg.1:c.T176A:p.L59Q exonic ENSMUSG00000026943 nonsynonymous SNV ENSMUST00000114245:c.T176A:p.L59Q 2qA3 NA NA chr2 25347995 ATCxGGG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 290 0 0 65.019913 0.25 0.02 2.373618 87 29 2387 795 60 60 0 0 AA 39.700941 132 0 3661 0 KEEP - Lcn12 YES AA_3 chr2 25536304 25536304 G T exonic Lcn6 nonsynonymous SNV NM_001276448:c.G383T:p.G128V exonic Lcn6 nonsynonymous SNV uc012bse.1:c.G383T:p.G128V exonic ENSMUSG00000045684 nonsynonymous SNV ENSMUST00000059693:c.G185T:p.G62V 2qA3 NA NA chr2 25536304 TTGxGGA G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 154 0 0 9.233287 0.075 0.02 0.896665 74 6 2058 156 60 60 0 0 GG 16.543565 55 0 1536 0 KEEP + Lcn6 NO AA_3 chr2 29770313 29770313 A T exonic Odf2 synonymous SNV NM_001177661:c.A1296T:p.L432L exonic Odf2 synonymous SNV uc008jao.1:c.A141T:p.L47L exonic ENSMUSG00000026790 synonymous SNV ENSMUST00000113764:c.A1107T:p.L369L 2qB NA NA chr2 29770313 GCTxAAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 49 0 0 8.802198 0.25 0.02 -0.140284 12 4 324 108 60 60 0 0 AA 7.517801 25 0 681 0 KEEP + Odf2 YES AA_3 chr2 30184870 30184870 C G exonic Nup188 nonsynonymous SNV NM_198304:c.C2577G:p.I859M exonic Nup188 nonsynonymous SNV uc008jcb.1:c.C2577G:p.I859M exonic ENSMUSG00000052533 nonsynonymous SNV ENSMUST00000064447:c.C2577G:p.I859M 2qB NA NA chr2 30184870 CATxTAC C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 179 0 0 38.984597 0.246377 0.02 1.287203 52 17 1491 476 60 60 0 0 CC 23.464119 78 0 2249 0 KEEP + Nup188 NO AA_3 chr2 31454142 31454142 A T exonic Fubp3 synonymous SNV NM_001033389:c.A489T:p.T163T exonic Fubp3 synonymous SNV uc008jdw.2:c.A489T:p.T163T exonic ENSMUSG00000026843 synonymous SNV ENSMUST00000055244:c.A489T:p.T163T 2qB NA NA chr2 31454142 CACxATC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999997 78 2 0 70.393785 0.694444 0.02 -0.315645 11 25 296 681 60 60 0 0 AA 9.624433 32 0 877 0 KEEP + Fubp3 YES AA_3 chr2 37001819 37001819 T C intergenic "Olfr362(dist=40651),Olfr365(dist=54944)" NA NA intergenic "Olfr362(dist=40651),Olfr365(dist=54944)" NA NA exonic ENSMUSG00000078198 nonsynonymous SNV ENSMUST00000104995:c.T86C:p.I29T 2qB NA NA chr2 37001819 TCAxCAT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 183 0 1 94.246354 0.420455 0.02 1.120634 51 37 1345 1026 60 60 0 0 TT 19.77306 76 1 2075 29 KEEP NA Olfr362 NO AA_3 chr2 37396537 37396537 A T intronic Rabgap1 NA NA intronic Rabgap1 NA NA intronic ENSMUSG00000035437 NA NA 2qB NA NA chr2 37396537 AATxAGT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 109 0 0 32.798591 0.291667 0.02 -0.429615 34 14 912 387 60 60 0 0 AA 11.695075 39 0 1044 0 KEEP + Rabgap1 YES AA_3 chr2 65299406 65299406 G A exonic Scn3a synonymous SNV NM_018732:c.C5052T:p.H1684H exonic Scn3a synonymous SNV uc012bwa.1:c.C5052T:p.H1684H exonic ENSMUSG00000057182 synonymous SNV ENSMUST00000066432:c.C5052T:p.H1684H 2qC1.3 NA NA chr2 65299406 AGGxTGA G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 399 6 0 114.692282 0.291209 0.02 3.196967 129 53 3585 1371 60 60 0 0 GG 49.31136 164 0 4450 0 KEEP - Scn3a NO AA_3 chr2 66332929 66332929 T A exonic Scn9a nonsynonymous SNV NM_018852:c.A3910T:p.I1304L exonic Scn9a nonsynonymous SNV uc008jxe.2:c.A3550T:p.I1184L exonic ENSMUSG00000075316 nonsynonymous SNV ENSMUST00000112354:c.A3904T:p.I1302L 2qC1.3 NA NA chr2 66332929 CTAxGAG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 102 0 0 75.223357 0.6 0.02 -0.39457 18 27 476 755 60 60 0 0 TT 12.631329 42 0 1140 0 KEEP - Scn9a YES AA_3 chr2 68546998 68546998 G C intronic 4932414N04Rik NA NA intronic 4932414N04Rik NA NA intronic ENSMUSG00000048204 NA NA 2qC2 NA NA chr2 68546998 TGTxAGT G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 93 0 0 49.43154 0.45 0.02 -0.350815 22 18 646 528 60 60 0 0 GG 10.52904 35 0 1006 0 KEEP + 4932414N04Rik NO AA_3 chr2 70412321 70412321 A T exonic Gad1 nonsynonymous SNV NM_008077:c.A497T:p.Q166L exonic Gad1 nonsynonymous SNV uc008jzm.1:c.A497T:p.Q166L exonic ENSMUSG00000070880 nonsynonymous SNV ENSMUST00000123330:c.A497T:p.Q166L 2qC2 NA NA chr2 70412321 AGCxGAT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 169 0 0 148.925326 0.602151 0.02 0.87997 37 56 1028 1494 60 60 0 0 AA 18.047194 60 0 1669 0 KEEP + Gad1 YES AA_3 chr2 73156308 73156308 T G exonic Scrn3 synonymous SNV NM_029022:c.T165G:p.T55T exonic Scrn3 synonymous SNV uc008kcn.1:c.T165G:p.T55T exonic ENSMUSG00000008226 synonymous SNV ENSMUST00000090811:c.T165G:p.T55T 2qC3 NA NA chr2 73156308 TACxTAT T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.610258 0.612407 0.99649 45 0 0 33.476772 0.555556 0.02 -0.236579 12 15 338 344 60 60 0 0 TT 4.512049 15 0 422 0 KEEP + Scrn3 NO AA_3 chr2 74685341 74685341 A T exonic Mtx2 nonsynonymous SNV NM_016804:c.A87T:p.R29S exonic Mtx2 nonsynonymous SNV uc008kej.2:c.A87T:p.R29S exonic ENSMUSG00000027099 nonsynonymous SNV ENSMUST00000028511:c.A87T:p.R29S 2qC3 NA NA chr2 74685341 GAGxGGT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 123 0 0 100.738027 0.705882 0.02 1.141394 15 36 428 970 60 60 0 0 AA 16.544284 55 0 1547 0 KEEP + Mtx2 YES AA_3 chr2 76569770 76569770 A G intronic Ttn NA NA intronic Ttn NA NA ncRNA_intronic ENSMUSG00000086354 NA NA 2qC3 NA NA chr2 76569770 GAAxGAA A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522089 0.522161 0.999863 45 0 0 8.415073 0.166667 0.02 -0.210457 20 4 558 112 60 60 0 0 AA 6.01562 20 0 556 0 KEEP - Ttn NO AA_3 chr2 76627905 76627905 A T intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76627905 TGTxGTT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291966 0.292001 0.999879 40 0 0 11.714057 0.294118 0.02 -0.149041 12 5 315 138 60 60 0 0 AA 6.613544 22 0 568 0 KEEP - Ttn YES AA_3 chr2 76732367 76732367 T A exonic Ttn stopgain SNV NM_011652:c.A16357T:p.R5453X exonic Ttn stopgain SNV uc008kfn.1:c.A16357T:p.R5453X exonic ENSMUSG00000051747 stopgain SNV ENSMUST00000134720:c.A6370T:p.R2124X 2qC3 NA NA chr2 76732367 TTCxATA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 129 0 0 36.763546 0.258065 0.02 1.142885 46 16 1217 445 60 60 0 0 TT 15.036442 50 0 1354 0 KEEP - Ttn YES AA_3 chr2 80286679 80286679 G C exonic Frzb nonsynonymous SNV NM_011356:c.C319G:p.P107A exonic Frzb nonsynonymous SNV uc008khl.1:c.C319G:p.P107A exonic ENSMUSG00000027004 nonsynonymous SNV ENSMUST00000028389:c.C319G:p.P107A 2qC3 NA NA chr2 80286679 AGGxCTT G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 96 0 0 27.096442 0.3 0.02 -0.349478 28 12 780 320 60 60 0 0 GG 15.316442 51 0 1366 0 KEEP - Frzb NO AA_3 chr2 84610097 84610097 A C intronic Serping1 NA NA intronic Serping1 NA NA intronic ENSMUSG00000023224 NA NA 2qD NA NA chr2 84610097 GTAxGTA A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 96 0 0 16.344136 0.1875 0.02 -0.42958 39 9 1072 221 60 60 0 0 AA 12.329945 41 0 1136 0 KEEP - Serping1 NO AA_3 chr2 86730705 86730705 A T exonic Olfr1097 nonsynonymous SNV NM_146843:c.T626A:p.L209Q exonic Olfr1097 nonsynonymous SNV uc008knb.2:c.T626A:p.L209Q exonic ENSMUSG00000075170 nonsynonymous SNV ENSMUST00000111576:c.T626A:p.L209Q 2qD NA NA chr2 86730705 GACxGCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 199 0 0 68.685833 0.294118 0.02 2.496367 72 30 1947 812 60 60 0 1 AA 25.850413 86 0 2349 0 KEEP - Olfr1097 YES AA_3 chr2 87964489 87964489 C A exonic Olfr1166 nonsynonymous SNV NM_146650:c.G652T:p.A218S exonic Olfr1166 nonsynonymous SNV uc008kpk.1:c.G652T:p.A218S exonic ENSMUSG00000075135 nonsynonymous SNV ENSMUST00000099833:c.G652T:p.A218S 2qD "Score=0.932191;Name=No.75253,chr2:88060869" NA chr2 87964489 ATGxTAG C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 154 2 0 62.975211 0.364865 0.02 0.948677 47 27 1357 712 60 60 0 0 CC 18.923242 63 0 1755 0 KEEP - Olfr1166 NO AA_3 chr2 88286246 88286246 A T exonic Olfr1182 nonsynonymous SNV NM_001011535:c.T848A:p.L283H exonic Olfr1182 nonsynonymous SNV uc008kpu.2:c.T848A:p.L283H exonic ENSMUSG00000075124 nonsynonymous SNV ENSMUST00000102619:c.T848A:p.L283H 2qD "Score=0.916658;Name=No.75256,chr2:88259039" NA chr2 88286246 ATGxGGG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 141 1 0 58.432464 0.444444 0.02 1.123892 30 24 822 631 60 60 0 0 AA 21.623982 72 0 1958 0 KEEP - Olfr1182 YES AA_3 chr2 89959044 89959044 G T exonic Olfr1269 nonsynonymous SNV NM_146342:c.C710A:p.T237N exonic Olfr1269 nonsynonymous SNV uc008ksm.1:c.C710A:p.T237N exonic ENSMUSG00000075067 nonsynonymous SNV ENSMUST00000099756:c.C710A:p.T237N 2qE1 "Score=0.915325;Name=No.75262,chr2:89876805" NA chr2 89959044 CAGxTGG G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 290 0 10 30.905752 0.142857 0.02 2.399778 96 16 2660 432 60 60 0 0 GG 40.901385 136 0 3717 0 KEEP - Olfr1269 NO AA_3 chr2 91337513 91337513 C G exonic Lrp4 nonsynonymous SNV NM_172668:c.C4549G:p.P1517A exonic Lrp4 nonsynonymous SNV uc008kvx.2:c.C4549G:p.P1517A exonic ENSMUSG00000027253 nonsynonymous SNV ENSMUST00000028689:c.C4549G:p.P1517A 2qE1 NA NA chr2 91337513 TGGxCCA C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 55 0 0 7.797793 0.173913 0.02 -0.201676 19 4 541 105 60 60 0 0 CC 9.020257 30 0 819 0 KEEP + Lrp4 NO AA_3 chr2 91337515 91337515 C T exonic Lrp4 synonymous SNV NM_172668:c.C4551T:p.P1517P exonic Lrp4 synonymous SNV uc008kvx.2:c.C4551T:p.P1517P exonic ENSMUSG00000027253 synonymous SNV ENSMUST00000028689:c.C4551T:p.P1517P 2qE1 NA NA chr2 91337515 GCCxAAC C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 54 0 0 7.397105 0.173913 0.02 -0.201691 19 4 551 101 60 60 0 0 CC 8.724079 29 0 832 0 KEEP + Lrp4 NO AA_3 chr2 92453803 92453803 A G exonic Chst1 synonymous SNV NM_023850:c.A462G:p.R154R exonic Chst1 synonymous SNV uc008lfk.2:c.A462G:p.R154R exonic ENSMUSG00000027221 synonymous SNV ENSMUST00000065797:c.A462G:p.R154R 2qE1 NA NA chr2 92453803 CAGxGGG A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 0.999999 73 0 0 15.803388 0.25 0.02 -0.24553 21 7 585 193 60 60 0 0 AA 10.824588 36 0 986 0 KEEP + Chst1 NO AA_3 chr3 102324670 102324670 A T exonic Ngf stopgain SNV NM_001112698:c.A625T:p.K209X exonic Ngf stopgain SNV uc012cuz.1:c.A625T:p.K209X exonic ENSMUSG00000027859 stopgain SNV ENSMUST00000035952:c.A625T:p.K209X 3qF2.2 NA NA chr3 102324670 GTCxAGG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 150 0 0 44.960686 0.30303 0.02 1.116542 46 20 1259 530 60 60 0 0 AA 20.38075 68 0 1808 0 KEEP + Ngf YES AA_3 chr3 103677900 103677900 C T intronic Ptpn22 NA NA intronic Ptpn22 NA NA intronic ENSMUSG00000027843 NA NA 3qF2.2 NA NA chr3 103677900 GTTxCAG C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 66 0 0 37.15363 0.482759 0.02 -0.254317 15 14 435 392 60 60 0 0 CC 8.12228 27 0 771 0 KEEP + Ptpn22 NO AA_3 chr3 105951757 105951757 C T exonic Chi3l3 stopgain SNV NM_009892:c.G998A:p.W333X exonic Chi3l3 stopgain SNV uc008qvw.2:c.G998A:p.W333X exonic ENSMUSG00000040809 stopgain SNV ENSMUST00000063062:c.G998A:p.W333X 3qF2.2 NA NA chr3 105951757 ACCxACT C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 337 3 140 25.576775 0.175676 0.02 1.046337 61 13 1721 343 60 60 0 0 CC 48.412293 161 0 4580 0 KEEP - Chi3l3 NO AA_3 chr3 107134998 107134998 A G exonic Rbm15 nonsynonymous SNV NM_001045807:c.T1001C:p.F334S exonic Rbm15 nonsynonymous SNV uc008qwz.1:c.T1001C:p.F334S exonic ENSMUSG00000048109 nonsynonymous SNV ENSMUST00000061772:c.T1001C:p.F334S 3qF2.3 NA NA chr3 107134998 TAGxACG A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800141 0.800245 0.999869 60 0 0 34.59464 0.393939 0.02 -0.298117 20 13 533 380 60 60 0 0 AA 6.316282 21 0 580 0 KEEP - Rbm15 NO AA_3 chr3 129533681 129533681 T A exonic Gar1 nonsynonymous SNV NM_026578:c.A79T:p.N27Y exonic Gar1 nonsynonymous SNV uc008rim.2:c.A79T:p.N27Y exonic ENSMUSG00000028010 nonsynonymous SNV ENSMUST00000149071:c.A79T:p.N27Y 3qG3 NA NA chr3 129533681 TGTxGCT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 99 0 0 46.999914 0.692308 0.02 -0.227747 8 18 204 454 60 60 0 0 TT 18.636367 62 0 1661 0 KEEP - Gar1 YES AA_3 chr3 143864900 143864900 G C exonic Lmo4 nonsynonymous SNV NM_001161770:c.C113G:p.A38G exonic Lmo4 nonsynonymous SNV uc008rpm.1:c.C113G:p.A38G exonic ENSMUSG00000028266 nonsynonymous SNV ENSMUST00000121112:c.C113G:p.A38G 3qH2 NA NA chr3 143864900 ATGxCAT G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 124 0 0 9.359616 0.092593 0.02 1.221788 49 5 1339 142 60 60 0 0 GG 15.640603 52 0 1441 0 KEEP - Lmo4 NO AA_3 chr3 144671880 144671880 C G exonic Clca3 nonsynonymous SNV NM_017474:c.G1939C:p.G647R exonic Clca3 nonsynonymous SNV uc008rqf.2:c.G1939C:p.G647R exonic ENSMUSG00000028255 nonsynonymous SNV ENSMUST00000029919:c.G1939C:p.G647R 3qH2 NA NA chr3 144671880 CTCxGTT C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693638 0.693668 0.999957 62 0 0 13.457692 0.266667 0.02 -0.262086 22 8 553 172 60 60 0 0 CC 7.818605 26 0 706 0 KEEP - Clca3 NO AA_3 chr3 14603893 14603893 G C exonic E2f5 nonsynonymous SNV NM_007892:c.G841C:p.E281Q exonic E2f5 nonsynonymous SNV uc008oqk.1:c.G841C:p.E281Q exonic ENSMUSG00000027552 nonsynonymous SNV ENSMUST00000029069:c.G841C:p.E281Q 3qA1 NA NA chr3 14603893 GCAxAAG G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739575 0.739671 0.999869 58 0 0 33.411979 0.40625 0.02 -0.280614 19 13 550 366 60 60 0 0 GG 6.316512 21 0 600 0 KEEP + E2f5 NO AA_3 chr3 14603894 14603894 A T exonic E2f5 nonsynonymous SNV NM_007892:c.A842T:p.E281V exonic E2f5 nonsynonymous SNV uc008oqk.1:c.A842T:p.E281V exonic ENSMUSG00000027552 nonsynonymous SNV ENSMUST00000029069:c.A842T:p.E281V 3qA1 NA NA chr3 14603894 CAGxAGT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739575 0.739671 0.999869 58 0 0 29.100766 0.40625 0.02 -0.280428 19 13 526 323 60 60 0 0 AA 6.316448 21 0 586 0 KEEP + E2f5 YES AA_3 chr3 151498670 151498670 T A exonic Ptgfr nonsynonymous SNV NM_008966:c.A164T:p.Y55F exonic Ptgfr nonsynonymous SNV uc008rsm.1:c.A164T:p.Y55F exonic ENSMUSG00000028036 nonsynonymous SNV ENSMUST00000106126:c.A164T:p.Y55F 3qH3 NA NA chr3 151498670 TGGxAGG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457737 0.457757 0.999957 52 0 0 50.184586 0.772727 0.02 -0.192902 5 17 131 472 60 60 0 0 TT 7.817923 26 0 690 0 KEEP - Ptgfr YES AA_3 chr3 20169146 20169146 A C intronic Cpb1 NA NA intronic Cpb1 NA NA intronic ENSMUSG00000011463 NA NA 3qA2 NA NA chr3 20169146 TGTxTGT A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.25975 0.260965 0.995343 34 0 0 22.200545 0.5 0.02 -0.140284 8 8 205 232 60 60 0 0 AA 4.210129 14 0 375 0 KEEP - Cpb1 NO AA_3 chr3 27234381 27234381 A T exonic Tnfsf10 nonsynonymous SNV NM_009425:c.A668T:p.Y223F exonic Tnfsf10 nonsynonymous SNV uc008otm.1:c.A668T:p.Y223F exonic ENSMUSG00000039304 nonsynonymous SNV ENSMUST00000046383:c.A668T:p.Y223F 3qA3 NA NA chr3 27234381 AGTxCAC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 0.999999 78 0 0 16.00474 0.25 0.02 -0.24545 21 7 534 195 60 60 0 0 AA 10.826232 36 0 968 0 KEEP + Tnfsf10 YES AA_3 chr3 30558021 30558021 C G exonic Lrriq4 nonsynonymous SNV NM_026668:c.C1348G:p.P450A exonic Lrriq4 nonsynonymous SNV uc008ovd.1:c.C1303G:p.P435A exonic ENSMUSG00000027703 nonsynonymous SNV ENSMUST00000108265:c.C1303G:p.P435A 3qA3 NA NA chr3 30558021 CTGxCAG C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 126 0 0 30.532125 0.254902 0.02 1.346284 38 13 1080 369 60 60 0 0 CC 18.347602 61 0 1690 0 KEEP + Lrriq4 NO AA_3 chr3 30558023 30558023 A T exonic Lrriq4 synonymous SNV NM_026668:c.A1350T:p.P450P exonic Lrriq4 synonymous SNV uc008ovd.1:c.A1305T:p.P435P exonic ENSMUSG00000027703 synonymous SNV ENSMUST00000108265:c.A1305T:p.P435P 3qA3 NA NA chr3 30558023 GCCxGCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 122 0 0 111.080184 0.77551 0.02 -0.429656 11 38 303 1043 60 60 0 0 AA 18.646979 62 0 1708 0 KEEP + Lrriq4 YES AA_3 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78105 0.78106 0.999988 67 2 0 19.59739 0.272727 0.02 -0.298132 24 9 675 237 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO AA_3 chr3 33713564 33713564 A T UTR3 Ttc14 NA NA UTR3 Ttc14 NA NA UTR3 ENSMUSG00000027677 NA NA 3qA3 NA NA chr3 33713564 AAGxGGT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 76 0 0 43.685788 0.695652 0.02 -0.201646 7 16 191 422 60 60 0 0 AA 11.128693 37 0 1027 0 KEEP + Ttc14 YES AA_3 chr3 40773819 40773819 G T exonic Larp1b nonsynonymous SNV NM_001040399:c.G365T:p.R122I exonic Larp1b nonsynonymous SNV uc008pcb.1:c.G224T:p.R75I exonic ENSMUSG00000037814 nonsynonymous SNV ENSMUST00000099122:c.G224T:p.R75I 3qB NA NA chr3 40773819 GGAxACG G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 54 0 0 7.127304 0.142857 0.02 -0.245546 24 4 700 102 60 60 0 0 GG 6.016501 20 0 571 0 KEEP + Larp1b NO AA_3 chr3 45184129 45184129 G A exonic Pcdh10 nonsynonymous SNV NM_001098170:c.G955A:p.E319K exonic Pcdh10 nonsynonymous SNV uc008pcy.1:c.G955A:p.E319K exonic ENSMUSG00000049100 nonsynonymous SNV ENSMUST00000051181:c.G1129A:p.E377K 3qB NA NA chr3 45184129 TATxAAG G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 253 2 0 29.476111 0.144144 0.02 2.310544 95 16 2746 417 60 60 0 0 GG 33.082988 110 0 3131 0 KEEP + Pcdh10 NO AA_3 chr3 53457786 53457786 A T exonic Frem2 nonsynonymous SNV NM_172862:c.T3221A:p.I1074K exonic Frem2 nonsynonymous SNV uc008pey.1:c.T3221A:p.I1074K exonic ENSMUSG00000037016 nonsynonymous SNV ENSMUST00000091137:c.T3221A:p.I1074K 3qC NA NA chr3 53457786 CTTxTCA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 153 0 0 143.13339 0.731343 0.02 1.107751 18 49 468 1367 60 60 0 0 AA 18.342381 61 0 1617 0 KEEP - Frem2 YES AA_3 chr3 55206915 55206915 T C intronic Dclk1 NA NA intronic Dclk1 NA NA intronic ENSMUSG00000027797 NA NA 3qC NA NA chr3 55206915 AACxTGG T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995686 0.995687 0.999999 111 0 0 88.881315 0.485294 0.02 1.197214 35 33 983 936 60 60 0 0 TT 10.82881 36 0 1011 0 KEEP + Dclk1 NO AA_3 chr3 57472466 57472466 G T intronic Gm410 NA NA intronic Gm410 NA NA intronic ENSMUSG00000074591 NA NA 3qD NA NA chr3 57472466 GTGxATC G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999962 0.999962 1 266 1 0 112.130995 0.464646 0.02 0.729286 53 46 1528 1199 60 60 0 0 GG 36.698785 122 0 3461 0 KEEP - Gm410 NO AA_3 chr3 59068902 59068902 A T exonic Med12l nonsynonymous SNV NM_177855:c.A5150T:p.K1717M exonic Med12l nonsynonymous SNV uc008pit.2:c.A125T:p.K42M exonic ENSMUSG00000056476 nonsynonymous SNV ENSMUST00000040325:c.A5051T:p.K1684M 3qD NA NA chr3 59068902 AGAxGAA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 66 0 0 45.517097 0.653846 0.02 -0.227958 9 17 251 447 60 60 0 0 AA 8.119114 27 0 736 0 KEEP + Med12l YES AA_3 chr3 63937888 63937888 A C exonic Vmn2r2 nonsynonymous SNV NM_001104592:c.T1075G:p.L359V exonic Vmn2r2 nonsynonymous SNV uc009vcj.1:c.T1075G:p.L359V exonic ENSMUSG00000043897 nonsynonymous SNV ENSMUST00000077958:c.T1075G:p.L359V 3qE1 NA NA chr3 63937888 ATAxGTC A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 397 0 0 155.675025 0.430464 0.02 3.842947 86 65 2377 1695 60 60 0 0 AA 58.353394 194 0 5416 0 KEEP - Vmn2r2 NO AA_3 chr3 64455730 64455730 T G ncRNA_exonic Vmn2r-ps11 NA NA exonic Vmn2r-ps11 nonsynonymous SNV uc008pkg.2:c.A1198C:p.S400R ncRNA_exonic ENSMUSG00000074581 NA NA 3qE1 "Score=0.981182;Name=No.81601,chr3:64267157" NA chr3 64455730 TGCxTAA T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 469 0 0 168.138015 0.374384 0.02 4.805937 127 76 3553 1902 60 60 0 0 TT 64.356146 214 0 5955 0 KEEP - Vmn2r-ps11 NO AA_3 chr3 97506118 97506118 G T intronic Pde4dip NA NA intronic Pde4dip NA NA intronic ENSMUSG00000038170 NA NA 3qF2.2 NA NA chr3 97506118 ACTxATT G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 106 0 0 37.855623 0.313725 0.02 1.24797 35 16 1020 440 60 60 0 0 GG 12.925643 43 0 1216 0 KEEP - Pde4dip NO AA_3 chr3 97942616 97942616 C T exonic Notch2 nonsynonymous SNV NM_010928:c.C5060T:p.A1687V exonic Notch2 nonsynonymous SNV uc008qpo.1:c.C5060T:p.A1687V exonic ENSMUSG00000027878 nonsynonymous SNV ENSMUST00000107028:c.C4439T:p.A1480V 3qF2.2 NA NA chr3 97942616 TCGxTGT C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693584 0.693668 0.999879 56 0 0 14.364046 0.233333 0.02 -0.263053 23 7 653 181 60 60 0 0 CC 6.617803 22 0 622 0 KEEP + Notch2 NO AA_3 chr4 102593616 102593616 T C intronic Sgip1 NA NA intronic Sgip1 NA NA intronic ENSMUSG00000028524 NA NA 4qC6 NA NA chr4 102593616 TACxTTA T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291961 0.292001 0.999863 39 0 0 11.913421 0.294118 0.02 -0.149079 12 5 338 140 60 60 0 0 TT 6.006347 20 0 542 0 KEEP + Sgip1 NO AA_3 chr4 104676488 104676488 T A exonic 1700024P16Rik synonymous SNV NM_001162980:c.T1935A:p.S645S exonic 1700024P16Rik synonymous SNV uc008tyc.2:c.T1935A:p.S645S exonic ENSMUSG00000078612 synonymous SNV ENSMUST00000106803:c.T1935A:p.S645S 4qC6 NA NA chr4 104676488 GTCxCAG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 67 0 0 21.806906 0.391304 0.02 -0.201665 14 9 384 242 60 60 0 0 TT 10.527995 35 0 981 0 KEEP + 1700024P16Rik YES AA_3 chr4 115243749 115243749 A T exonic Cyp4a31 nonsynonymous SNV NM_001252539:c.A1036T:p.T346S exonic Cyp4a31 nonsynonymous SNV uc012djd.1:c.A1081T:p.T361S exonic ENSMUSG00000028712 nonsynonymous SNV ENSMUST00000030480:c.A1036T:p.T346S 4qD1 "Score=0.926879;Name=No.86353,chr4:115184314" NA chr4 115243749 ATCxCCT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 120 0 0 37.274443 0.428571 0.02 -0.306818 20 15 516 405 60 60 0 0 AA 21.330176 71 0 1877 0 KEEP + Cyp4a31 YES AA_3 chr4 117841000 117841000 G C exonic Kdm4a nonsynonymous SNV NM_001161823:c.C613G:p.P205A exonic Kdm4a nonsynonymous SNV uc008ujn.2:c.C613G:p.P205A exonic ENSMUSG00000033326 nonsynonymous SNV ENSMUST00000050288:c.C613G:p.P205A 4qD2.1 NA NA chr4 117841000 TTGxCTC G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 74 0 0 42.797578 0.652174 0.02 -0.210467 8 15 231 421 70 60 0 0 GG 11.731213 39 0 1097 0 KEEP - Kdm4a NO AA_3 chr4 117882423 117882423 T A UTR3 Ptprf NA NA UTR3 Ptprf NA NA UTR3 ENSMUSG00000033295 NA NA 4qD2.1 NA NA chr4 117882423 CAGxAGT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 113 0 0 41.051659 0.369565 0.02 -0.403276 29 17 753 461 60 60 0 0 TT 15.327138 51 0 1331 0 KEEP - Ptprf YES AA_3 chr4 118049168 118049168 T A intronic Szt2 NA NA intronic Szt2 NA NA intronic ENSMUSG00000033253 NA NA 4qD2.1 NA NA chr4 118049168 GGCxGAG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 0.999999 83 0 0 49.426273 0.487179 0.02 -0.34196 20 19 545 521 60 60 0 0 TT 10.827562 36 0 988 0 KEEP - Szt2 YES AA_3 chr4 120712400 120712400 T A intronic Col9a2 NA NA intronic Col9a2 NA NA intronic ENSMUSG00000028626 NA NA 4qD2.2 NA NA chr4 120712400 TCCxGTC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 58 0 0 21.800198 0.666667 0.02 -0.105148 4 8 97 213 60 60 0 0 TT 11.420988 38 0 1021 0 KEEP + Col9a2 YES AA_3 chr4 122923856 122923856 G C exonic Heyl nonsynonymous SNV NM_013905:c.G964C:p.E322Q exonic Heyl nonsynonymous SNV uc008uoz.1:c.G964C:p.E322Q exonic ENSMUSG00000032744 nonsynonymous SNV ENSMUST00000040821:c.G964C:p.E322Q 4qD2.2 NA NA chr4 122923856 ACTxAAA G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 204 0 0 13.780462 0.088608 0.02 1.100694 72 7 2091 207 60 60 0 0 GG 29.169383 97 0 2748 0 KEEP + Heyl NO AA_3 chr4 129104880 129104880 C A exonic Zbtb8b nonsynonymous SNV NM_153541:c.G1332T:p.K444N exonic Zbtb8b nonsynonymous SNV uc008uwy.1:c.G1332T:p.K444N exonic ENSMUSG00000048485 nonsynonymous SNV ENSMUST00000053042:c.G1332T:p.K444N 4qD2.2 NA NA chr4 129104880 ACTxTTC C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 0.999999 73 0 0 38.941986 0.551724 0.02 -0.25407 13 16 369 400 60 60 0 0 CC 10.829945 36 0 1036 0 KEEP - Zbtb8b NO AA_3 chr4 133042104 133042104 A T exonic Fam46b stopgain SNV NM_175307:c.A370T:p.K124X exonic Fam46b stopgain SNV uc008vct.2:c.A370T:p.K124X exonic ENSMUSG00000046694 stopgain SNV ENSMUST00000051676:c.A370T:p.K124X 4qD2.3 NA NA chr4 133042104 TACxAGG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 104 0 0 19.321092 0.214286 0.02 -0.377023 33 9 895 245 60 60 0 0 AA 14.136428 47 0 1298 0 KEEP + Fam46b YES AA_3 chr4 133708140 133708140 T A exonic Cep85 nonsynonymous SNV NM_144527:c.A1217T:p.K406M exonic Ccdc21 nonsynonymous SNV uc008ved.2:c.A1217T:p.K406M exonic ENSMUSG00000037443 nonsynonymous SNV ENSMUST00000040271:c.A1217T:p.K406M 4qD3 NA NA chr4 133708140 TCCxTGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 74 0 0 15.963611 0.269231 0.02 -0.227992 19 7 532 192 60 60 0 0 TT 11.128911 37 0 1027 0 KEEP - Cep85 YES AA_3 chr4 133708141 133708141 T G exonic Cep85 nonsynonymous SNV NM_144527:c.A1216C:p.K406Q exonic Ccdc21 nonsynonymous SNV uc008ved.2:c.A1216C:p.K406Q exonic ENSMUSG00000037443 nonsynonymous SNV ENSMUST00000040271:c.A1216C:p.K406Q 4qD3 NA NA chr4 133708141 CCTxGCT T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 76 0 0 22.859201 0.321429 0.02 -0.245529 19 9 519 262 60 60 0 0 TT 11.429451 38 0 1049 0 KEEP - Cep85 NO AA_3 chr4 152806140 152806140 A C intronic Ajap1 NA NA intronic Ajap1 NA NA intronic ENSMUSG00000039546 NA NA 4qE2 NA NA chr4 152806140 AACxCAG A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 79 0 0 35.712093 0.541667 0.02 -0.210444 11 13 293 367 60 60 0 0 AA 12.932577 43 0 1174 0 KEEP - Ajap1 NO AA_3 chr4 155420956 155420956 A C intronic Ttll10 NA NA UTR3 Ttll10 NA NA UTR3 ENSMUSG00000029074 NA NA 4qE2 NA NA chr4 155420956 AGAxGTG A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 108 0 0 11.359956 0.136364 0.02 -0.38578 38 6 1038 161 60 60 0 0 AA 13.801812 46 0 1260 0 KEEP - Ttll10 NO AA_3 chr4 41067622 41067622 T A exonic Nol6 synonymous SNV NM_139236:c.A1275T:p.P425P exonic Nol6 synonymous SNV uc008sii.1:c.A1275T:p.P425P exonic ENSMUSG00000028430 synonymous SNV ENSMUST00000030138:c.A1275T:p.P425P 4qA5 NA NA chr4 41067622 TGAxGGG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 141 0 0 63.535455 0.470588 0.02 1.239306 27 24 702 674 60 60 0 0 TT 19.246758 64 0 1726 0 KEEP - Nol6 YES AA_3 chr4 45056574 45056574 T G exonic Fbxo10 nonsynonymous SNV NM_001024142:c.A2120C:p.D707A exonic Fbxo10 nonsynonymous SNV uc008ssf.2:c.A2120C:p.D707A exonic ENSMUSG00000048232 nonsynonymous SNV ENSMUST00000052236:c.A2120C:p.D707A 4qB1 NA NA chr4 45056574 GGGxCAT T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 47 0 0 8.895969 0.173913 0.02 -0.201652 19 4 501 116 60 60 0 0 TT 6.315167 21 0 570 0 KEEP - Fbxo10 NO AA_3 chr4 60594933 60594933 C T exonic Mup10 nonsynonymous SNV NM_001122647:c.G28A:p.G10R exonic Mup10 nonsynonymous SNV uc008tan.2:c.G28A:p.G10R exonic ENSMUSG00000078680 nonsynonymous SNV ENSMUST00000098047:c.G28A:p.G10R 4qB3 "Score=0.987494;Name=No.86160,chr4:60810643" NA chr4 60594933 GTCxCAA C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 471 1 149 20.447637 0.140845 0.02 1.171087 61 10 1720 282 57 29 0 0 CC 97.999524 326 0 9025 0 KEEP - Mup10 NO AA_3 chr4 61333736 61333736 G A intronic LOC100048884 NA NA intronic "LOC100048884,Mup19,Mup2" NA NA intronic ENSMUSG00000078674 NA NA 4qB3 "Score=0.987825;Name=No.86219,chr4:61060432" NA chr4 61333736 TGAxCTG G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 380 0 36 24.02228 0.1875 0.02 0.932346 52 12 1466 317 60 60 0 0 GG 67.35942 224 0 6218 0 KEEP - LOC100048884 NO AA_3 chr4 62313899 62313899 T A intronic Rgs3 NA NA intronic Rgs3 NA NA intronic ENSMUSG00000059810 NA NA 4qB3 NA NA chr4 62313899 CCCxGGT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 95 0 0 15.80443 0.25 0.02 -0.245467 21 7 557 193 60 60 0 0 TT 16.24018 54 0 1482 0 KEEP + Rgs3 YES AA_3 chr4 73380403 73380403 T A exonic Rasef synonymous SNV NM_001017427:c.A1521T:p.L507L exonic Rasef synonymous SNV uc008tiw.1:c.A1521T:p.L507L exonic ENSMUSG00000043003 synonymous SNV ENSMUST00000058292:c.A1521T:p.L507L 4qC3 NA NA chr4 73380403 GTAxAGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 129 0 0 15.930331 0.153846 0.02 1.239387 44 8 1131 218 60 60 0 0 TT 17.742464 59 0 1579 0 KEEP - Rasef YES AA_3 chr4 83250072 83250072 T A exonic Ccdc171 stopgain SNV NM_001081012:c.T1068A:p.C356X exonic 4930473A06Rik stopgain SNV uc008tlc.1:c.T1068A:p.C356X exonic ENSMUSG00000052407 stopgain SNV ENSMUST00000053414:c.T1068A:p.C356X 4qC3 NA NA chr4 83250072 CTGxGCA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 53 0 0 14.257837 0.3 0.02 -0.175355 14 6 371 167 60 60 0 0 TT 8.721627 29 0 786 0 KEEP + Ccdc171 YES AA_3 chr4 83388916 83388916 G A exonic Ccdc171 nonsynonymous SNV NM_001081012:c.G3358A:p.D1120N exonic 4930473A06Rik nonsynonymous SNV uc008tlf.1:c.G193A:p.D65N exonic ENSMUSG00000052407 nonsynonymous SNV ENSMUST00000053414:c.G3358A:p.D1120N 4qC3 NA NA chr4 83388916 CAGxACA G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099162 0.099721 0.994391 26 0 0 9.884724 0.4 0.02 -0.087694 6 4 174 109 60 60 0 0 GG 3.910552 13 0 368 0 KEEP + Ccdc171 NO AA_3 chr5 100957653 100957653 G A exonic Cops4 nonsynonymous SNV NM_012001:c.G250A:p.V84I exonic Cops4 nonsynonymous SNV uc008yhr.2:c.G250A:p.V84I exonic ENSMUSG00000035297 nonsynonymous SNV ENSMUST00000151414:c.G97A:p.V33I 5qE4 NA NA chr5 100957653 GAGxTCT G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 85 0 0 10.000144 0.172414 0.02 -0.254281 24 5 660 134 60 60 0 0 GG 15.031438 50 0 1346 0 KEEP + Cops4 NO AA_3 chr5 100957654 100957654 T C exonic Cops4 nonsynonymous SNV NM_012001:c.T251C:p.V84A exonic Cops4 nonsynonymous SNV uc008yhr.2:c.T251C:p.V84A exonic ENSMUSG00000035297 nonsynonymous SNV ENSMUST00000151414:c.T98C:p.V33A 5qE4 NA NA chr5 100957654 AGGxCTA T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 86 0 0 10.799591 0.172414 0.02 -0.254271 24 5 645 142 60 60 0 0 TT 15.306051 51 0 1347 0 KEEP + Cops4 NO AA_3 chr5 107066094 107066094 T A exonic Zfp644 synonymous SNV NM_026856:c.A1605T:p.A535A exonic Zfp644 synonymous SNV uc008ylp.1:c.A1215T:p.A405A exonic ENSMUSG00000049606 synonymous SNV ENSMUST00000045466:c.A1605T:p.A535A 5qE5 NA NA chr5 107066094 CACxGCC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 130 0 0 93.415456 0.636364 0.02 1.106434 20 35 557 924 60 60 0 0 TT 19.522516 65 0 1771 0 KEEP - Zfp644 YES AA_3 chr5 109272737 109272737 G C exonic Vmn2r9 nonsynonymous SNV NM_001104621:c.C1776G:p.F592L exonic Vmn2r9 nonsynonymous SNV uc009vdg.1:c.C1776G:p.F592L exonic ENSMUSG00000091624 nonsynonymous SNV ENSMUST00000170419:c.C1776G:p.F592L 5qF "Score=0.923619;Name=No.90941,chr5:109218412" NA chr5 109272737 GAGxAAC G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 439 1 0 9.366522 0.045113 0.02 2.224202 127 6 3624 171 60 60 0 0 GG 80.845871 269 0 7559 0 KEEP - Vmn2r9 NO AA_3 chr5 113497708 113497708 C T intronic Crybb2 NA NA intronic Crybb2 NA NA intronic ENSMUSG00000042240 NA NA 5qF NA NA chr5 113497708 TACxCAC C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 105 0 0 64.945042 0.638889 0.02 -0.324395 13 23 352 642 60 60 0 0 CC 13.534015 45 0 1236 0 KEEP - Crybb2 NO AA_3 chr5 114407389 114407389 T G intronic Ssh1 NA NA intronic Ssh1 NA NA intronic ENSMUSG00000042121 NA NA 5qF NA NA chr5 114407389 GTCxTAC T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552864 0.552887 0.999957 68 0 0 26.194529 0.44 0.02 -0.219162 14 11 385 284 60 60 0 0 TT 7.820258 26 0 726 0 KEEP - Ssh1 NO AA_3 chr5 115094547 115094547 T A exonic Trpv4 nonsynonymous SNV NM_022017:c.A362T:p.K121M exonic Trpv4 nonsynonymous SNV uc008yzv.2:c.A362T:p.K121M exonic ENSMUSG00000014158 nonsynonymous SNV ENSMUST00000112217:c.A362T:p.K121M 5qF NA NA chr5 115094547 CTCxTGT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 123 0 0 24.173672 0.282051 0.02 -0.341954 28 11 774 290 60 60 0 0 TT 18.348759 61 0 1712 0 KEEP - Trpv4 YES AA_3 chr5 115395991 115395991 A T intronic 2210016L21Rik NA NA intronic 2210016L21Rik NA NA intronic ENSMUSG00000029559 NA NA 5qF NA NA chr5 115395991 TGGxAGT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 125 0 0 67.735368 0.722222 0.02 -0.315487 10 26 271 646 60 60 0 0 AA 19.251029 64 0 1792 0 KEEP + 2210016L21Rik YES AA_3 chr5 116429829 116429829 T C exonic Cit nonsynonymous SNV NM_007708:c.T3788C:p.L1263P exonic Cit nonsynonymous SNV uc008zev.1:c.T632C:p.L211P exonic ENSMUSG00000029516 nonsynonymous SNV ENSMUST00000112008:c.T3662C:p.L1221P 5qF NA NA chr5 116429829 AACxCAT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 89 0 0 22.410627 0.346154 0.02 -0.227993 17 9 472 254 60 60 0 0 TT 13.21398 44 0 1197 0 KEEP + Cit NO AA_3 chr5 116471510 116471510 T A exonic Prkab1 nonsynonymous SNV NM_031869:c.A305T:p.K102M exonic Prkab1 nonsynonymous SNV uc008zew.1:c.A305T:p.K102M exonic ENSMUSG00000029513 nonsynonymous SNV ENSMUST00000031486:c.A305T:p.K102M 5qF NA NA chr5 116471510 AGCxTGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 165 2 0 95.595967 0.679245 0.02 1.132799 17 36 472 929 60 60 0 0 TT 23.161629 77 0 2162 0 KEEP - Prkab1 YES AA_3 chr5 122279002 122279002 T A exonic Sh2b3 synonymous SNV NM_008507:c.A57T:p.A19A exonic Sh2b3 synonymous SNV uc008zkg.1:c.A57T:p.A19A exonic ENSMUSG00000042594 synonymous SNV ENSMUST00000040308:c.A57T:p.A19A 5qF NA NA chr5 122279002 GGAxGCC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.99986 38 0 0 7.079239 0.3 0.02 -0.087661 7 3 178 83 60 60 0 0 TT 5.707159 19 0 485 0 KEEP - Sh2b3 YES AA_3 chr5 124837551 124837551 A C exonic Sbno1 nonsynonymous SNV NM_001081203:c.T2977G:p.L993V exonic Sbno1 nonsynonymous SNV uc008zpp.1:c.T2974G:p.L992V exonic ENSMUSG00000038095 nonsynonymous SNV ENSMUST00000065263:c.T2977G:p.L993V 5qF NA NA chr5 124837551 TCAxAAA A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 100 2 0 17.191671 0.173913 0.02 -0.403371 38 8 1056 226 60 60 0 0 AA 12.633305 42 0 1173 0 KEEP - Sbno1 NO AA_3 chr5 125004495 125004495 C G intronic Ddx55 NA NA intronic Ddx55 NA NA intronic ENSMUSG00000029389 NA NA 5qF NA NA chr5 125004495 GGTxTCC C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 71 0 0 8.059702 0.137931 0.02 -0.254293 25 4 699 112 60 60 0 0 CC 9.926805 33 0 934 0 KEEP + Ddx55 NO AA_3 chr5 136235031 136235031 A C exonic Styxl1 nonsynonymous SNV NM_029659:c.T445G:p.F149V exonic Styxl1 nonsynonymous SNV uc008zyv.2:c.T13G:p.F5V exonic ENSMUSG00000019178 nonsynonymous SNV ENSMUST00000111161:c.T13G:p.F5V 5qG2 NA NA chr5 136235031 GGAxGAA A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 472 8 0 52.198672 0.224 0.02 2.196718 97 28 2698 677 60 60 0 0 AA 79.653018 265 0 7318 0 KEEP - Styxl1 NO AA_3 chr5 138617131 138617131 C G intronic Ap4m1 NA NA intronic Ap4m1 NA NA intronic ENSMUSG00000019518 NA NA 5qG2 NA NA chr5 138617131 TTTxTTT C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 209 0 0 30.994894 0.155556 0.02 1.10298 76 14 2195 412 70 70 0 0 CC 26.774134 89 0 2556 0 KEEP + Ap4m1 NO AA_3 chr5 140448557 140448557 T A exonic Elfn1 nonsynonymous SNV NM_175522:c.T1361A:p.V454E exonic Elfn1 nonsynonymous SNV uc009ahi.2:c.T1361A:p.V454E exonic ENSMUSG00000048988 nonsynonymous SNV ENSMUST00000050519:c.T1361A:p.V454E 5qG2 NA NA chr5 140448557 CTGxGGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999998 85 2 0 28.263615 0.292683 0.02 -0.368227 29 12 757 333 60 60 0 0 TT 10.220603 34 0 906 0 KEEP + Elfn1 YES AA_3 chr5 144278068 144278068 C A exonic Rac1 nonsynonymous SNV NM_009007:c.G65T:p.S22I exonic Rac1 nonsynonymous SNV uc009akk.1:c.G65T:p.S22I exonic ENSMUSG00000001847 nonsynonymous SNV ENSMUST00000080537:c.G65T:p.S22I 5qG2 NA NA chr5 144278068 TAAxTGA C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 224 5 0 65.360548 0.35 0.02 0.87831 52 28 1482 745 60 60 0 0 CC 31.268784 104 0 2927 0 KEEP - Rac1 NO AA_3 chr5 14911322 14911322 C A intronic Gm9758 NA NA intronic Gm9758 NA NA intronic ENSMUSG00000033219 NA NA 5qA1 "Score=0.976005;Name=No.90292,chr5:14924346" NA chr5 14911322 GACxGAA C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 406 5 128 20.482667 0.141026 0.02 0.904778 67 11 1802 290 43 20 0 0 CC 70.928626 236 0 6351 0 KEEP - Gm9758 NO AA_3 chr5 15030242 15030242 A G exonic Gm17019 synonymous SNV NM_182957:c.T555C:p.R185R exonic Gm17019 synonymous SNV uc008wmq.2:c.T555C:p.R185R exonic ENSMUSG00000091897 synonymous SNV ENSMUST00000167908:c.T555C:p.R185R 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030242 CAAxCGT A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 948 15 256 16.443455 0.052083 0.02 3.340982 182 10 4876 287 60 36 0 0 AA 178.733243 601 1 16351 18 KEEP - Gm17019 NO AA_3 chr5 15030259 15030259 C T exonic Gm17019 nonsynonymous SNV NM_182957:c.G538A:p.A180T exonic Gm17019 nonsynonymous SNV uc008wmq.2:c.G538A:p.A180T exonic ENSMUSG00000091897 nonsynonymous SNV ENSMUST00000167908:c.G538A:p.A180T 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030259 TGGxCCA C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1269 17 227 15.323445 0.044898 0.02 4.022343 234 11 6545 295 57 35 0 0 CC 244.773041 824 1 22340 27 KEEP - Gm17019 NO AA_3 chr5 151191368 151191368 C G exonic Fry nonsynonymous SNV NM_172887:c.C2172G:p.S724R exonic Fry nonsynonymous SNV uc009att.1:c.C2163G:p.S721R exonic ENSMUSG00000056602 nonsynonymous SNV ENSMUST00000045502:c.C2163G:p.S721R 5qG3 NA NA chr5 151191368 CAGxCAC C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 219 2 0 20.918702 0.112245 0.02 0.934303 87 11 2437 306 60 60 0 0 CC 27.954084 93 0 2540 0 KEEP + Fry NO AA_3 chr5 15126151 15126151 C A exonic Speer4d nonsynonymous SNV NM_025759:c.C55A:p.Q19K exonic Speer4d nonsynonymous SNV uc008wmr.1:c.C55A:p.Q19K exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000095006:c.C55A:p.Q19K 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15126151 AAGxAGT C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1405 8 490 16.149881 0.046218 0.02 4.498049 227 11 6457 302 54 20 0 0 CC 255.036484 848 0 23767 0 KEEP + Speer4d NO AA_3 chr5 15128347 15128347 A T exonic Speer4d nonsynonymous SNV NM_025759:c.A401T:p.D134V exonic Speer4d nonsynonymous SNV uc008wmr.1:c.A401T:p.D134V exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000119100:c.A245T:p.D82V 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15128347 CTGxTTG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1427 30 362 28.690201 0.075949 0.02 4.482221 219 18 5817 477 60 40 0 0 AA 280.410112 933 0 25187 0 KEEP + Speer4d YES AA_3 chr5 15159443 15159443 C T ncRNA_exonic 4930572O03Rik NA NA exonic Gm9758 synonymous SNV uc008wmo.2:c.G390A:p.Q130Q exonic ENSMUSG00000069720 synonymous SNV ENSMUST00000092696:c.G396A:p.Q132Q 5qA2 "Score=0.980142;Name=No.90369,chr5:15201863" NA chr5 15159443 AGCxTGT C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1679 24 400 22.760426 0.034783 0.02 11.020747 444 16 12757 452 60 60 0 0 CC 282.442701 939 0 26913 0 KEEP - 4930572O03Rik NO AA_3 chr5 24804797 24804797 T G exonic Kmt2c nonsynonymous SNV NM_001081383:c.A11330C:p.K3777T exonic Mll3 nonsynonymous SNV uc008wsu.1:c.A1499C:p.K500T exonic ENSMUSG00000038056 nonsynonymous SNV ENSMUST00000174734:c.A1097C:p.K366T 5qA3 NA NA chr5 24804797 TTCxTAT T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992092 0.992094 0.999998 98 0 0 80.382147 0.52381 0.02 1.14298 30 33 836 836 60 60 0 0 TT 9.926027 33 0 919 0 KEEP - Kmt2c NO AA_3 chr5 26345992 26345992 T A exonic Gm5862 nonsynonymous SNV NM_001281525:c.A518T:p.K173M intergenic "Actr3b(dist=989833),Speer4a(dist=14818)" NA NA exonic ENSMUSG00000067700 nonsynonymous SNV ENSMUST00000072286:c.A518T:p.K173M 5qB1 "Score=0.959747;Name=No.90488,chr5:26368162" NA chr5 26345992 TCCxTGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1208 9 25 51.775191 0.11194 0.02 5.460544 238 30 6603 782 60 60 0 0 TT 235.528233 792 1 21983 25 KEEP - Gm5862 YES AA_3 chr5 26402123 26402123 G A intronic Gm21671 NA NA intergenic "Speer4a(dist=36078),Gm10471(dist=6589)" NA NA intergenic "ENSMUSG00000073117(dist=17002),ENSMUSG00000073116(dist=6589)" NA NA 5qB1 "Score=0.958652;Name=No.90497,chr5:26366487" NA chr5 26402123 AGCxGGG G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 373 4 17 51.416219 0.219048 0.02 2.498353 82 23 2126 644 60 60 0 0 GG 70.637566 235 0 6141 0 KEEP - Gm21671 NO AA_3 chr5 26445122 26445122 T A intronic Gm10220 NA NA intronic Gm10220 NA NA intronic ENSMUSG00000067698 NA NA 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445122 GGTxGGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 982 3 293 13.488955 0.096774 0.02 0.720627 84 9 2279 220 57 33 0 0 TT 221.974617 741 1 20244 7 KEEP - Gm10220 YES AA_3 chr5 26445213 26445213 G T exonic Gm10220 nonsynonymous SNV NM_001134299:c.C375A:p.D125E exonic Gm10220 nonsynonymous SNV uc012dto.1:c.C375A:p.D125E exonic ENSMUSG00000067698 nonsynonymous SNV ENSMUST00000088236:c.C375A:p.D125E 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445213 TAAxTCG G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1247 12 217 23.200614 0.080925 0.02 3.568922 159 14 4493 375 55 33 0 0 GG 250.841939 844 1 23314 28 KEEP - Gm10220 NO AA_3 chr5 31369376 31369376 A T exonic Cad nonsynonymous SNV NM_023525:c.A2423T:p.K808M exonic Cad nonsynonymous SNV uc008wwy.1:c.A2423T:p.K808M exonic ENSMUSG00000013629 nonsynonymous SNV ENSMUST00000031049:c.A2234T:p.K745M 5qB1 NA NA chr5 31369376 ATAxGCG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 122 1 0 61.167497 0.510204 0.02 -0.438358 24 25 665 640 60 60 0 0 AA 18.045335 60 0 1647 0 KEEP + Cad YES AA_3 chr5 35389551 35389551 A G exonic Hgfac nonsynonymous SNV NM_019447:c.A1508G:p.K503R exonic Hgfac nonsynonymous SNV uc008xdj.2:c.A1508G:p.K503R exonic ENSMUSG00000029102 nonsynonymous SNV ENSMUST00000030985:c.A1508G:p.K503R 5qB2 NA NA chr5 35389551 AGAxGAA A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 268 3 0 70.133749 0.325843 0.02 1.013241 60 29 1668 807 60 60 0 0 AA 42.958022 143 0 3921 0 KEEP + Hgfac NO AA_3 chr5 35419933 35419933 G C intronic Dok7 NA NA intronic Dok7 NA NA intronic ENSMUSG00000044716 NA NA 5qB2 NA NA chr5 35419933 TTGxTCT G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.023895 0.024074 0.99257 15 0 0 8.487129 0.6 0.02 -0.043597 2 3 39 85 60 60 0 0 GG 2.405872 8 0 217 0 KEEP + Dok7 NO AA_3 chr5 36040130 36040130 T A exonic Sh3tc1 nonsynonymous SNV NM_194344:c.A3871T:p.T1291S exonic Sh3tc1 nonsynonymous SNV uc012dvb.1:c.A2821T:p.T941S exonic ENSMUSG00000036553 nonsynonymous SNV ENSMUST00000037959:c.A3289T:p.T1097S 5qB3 NA NA chr5 36040130 GGGxGTA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 142 3 0 56.937738 0.383333 0.02 1.169522 37 23 928 633 60 60 0 0 TT 19.806984 66 0 1692 0 KEEP - Sh3tc1 YES AA_3 chr5 37496933 37496933 A T exonic Jakmip1 synonymous SNV NM_178394:c.A1185T:p.I395I exonic Jakmip1 synonymous SNV uc008xfj.2:c.A1185T:p.I395I exonic ENSMUSG00000063646 synonymous SNV ENSMUST00000174629:c.A690T:p.I230I 5qB3 NA NA chr5 37496933 GATxGAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423426 0.423478 0.999879 50 1 0 13.106809 0.285714 0.02 -0.184104 15 6 407 157 60 60 0 0 AA 6.589819 22 0 575 0 KEEP + Jakmip1 YES AA_3 chr5 38691787 38691787 T A intronic Otop1 NA NA intronic Otop1 NA NA intronic ENSMUSG00000051596 NA NA 5qB3 NA NA chr5 38691787 AGCxGTT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 81 0 0 64.793454 0.657143 0.02 -0.306897 12 23 326 636 60 60 0 0 TT 12.330022 41 0 1108 0 KEEP + Otop1 YES AA_3 chr5 44485630 44485630 T A intronic Prom1 NA NA intronic Prom1 NA NA intronic ENSMUSG00000029086 NA NA 5qB3 NA NA chr5 44485630 CACxCAC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 38 0 0 8.681652 0.235294 0.02 -0.149066 13 4 361 108 60 60 0 0 TT 5.413364 18 0 500 0 KEEP - Prom1 YES AA_3 chr5 48623113 48623113 A T intronic Slit2 NA NA intronic Slit2 NA NA intronic ENSMUSG00000031558 NA NA 5qB3 NA NA chr5 48623113 GGCxGCC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 40 0 0 15.965509 0.461538 0.02 -0.113992 7 6 189 170 60 60 0 0 AA 6.911753 23 0 615 0 KEEP + Slit2 YES AA_3 chr5 50378918 50378918 T A splicing Gpr125(NM_133911:exon13:c.1573-2A>T) NA NA splicing Gpr125(uc008xjz.2:exon13:c.1573-2A>T) NA NA splicing ENSMUSG00000029090(ENSMUST00000030971:exon13:c.1573-2A>T) NA NA 5qB3 NA NA chr5 50378918 TACxGCA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043759 0.043787 0.999366 32 0 0 7.554573 0.428571 0.02 -0.061383 4 3 113 82 60 60 0 0 TT 5.113163 17 0 469 0 KEEP - Gpr125 YES AA_3 chr5 52929499 52929499 A C exonic Lgi2 synonymous SNV NM_144945:c.T1356G:p.R452R exonic Lgi2 synonymous SNV uc008xkm.1:c.T1356G:p.R452R exonic ENSMUSG00000039252 synonymous SNV ENSMUST00000039750:c.T1356G:p.R452R 5qC1 NA NA chr5 52929499 CCAxCGC A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 69 0 0 44.695783 0.472222 0.02 -0.315651 19 17 505 474 60 60 0 0 AA 8.420072 28 0 752 0 KEEP - Lgi2 NO AA_3 chr5 64318272 64318272 T A exonic Rell1 synonymous SNV NM_145923:c.A639T:p.G213G exonic Rell1 synonymous SNV uc008xmh.1:c.A639T:p.G213G exonic ENSMUSG00000047881 synonymous SNV ENSMUST00000154169:c.A639T:p.G213G 5qC3.1 NA NA chr5 64318272 CCGxCCC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 189 1 0 145.037668 0.647059 0.02 0.84346 30 55 798 1428 60 60 0 0 TT 25.262566 84 0 2285 0 KEEP - Rell1 YES AA_3 chr5 65318549 65318549 T A intronic Tlr1 NA NA intronic Tlr1 NA NA intronic ENSMUSG00000044827 NA NA 5qC3.1 NA NA chr5 65318549 AAAxTTA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 116 0 0 38.232848 0.298246 0.02 1.195716 40 17 1077 452 60 60 0 0 TT 15.038003 50 0 1372 0 KEEP - Tlr1 YES AA_3 chr5 67360327 67360327 A T exonic Limch1 nonsynonymous SNV NM_001256122:c.A31T:p.I11F exonic Limch1 nonsynonymous SNV uc008xpi.1:c.A31T:p.I11F exonic ENSMUSG00000037736 nonsynonymous SNV ENSMUST00000038188:c.A31T:p.I11F 5qC3.1 NA NA chr5 67360327 GACxTTG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 165 0 0 47.546632 0.358491 0.02 1.230533 34 19 896 535 60 60 0 0 AA 25.261168 84 0 2259 0 KEEP + Limch1 YES AA_3 chr5 87322823 87322823 T G exonic Ugt2b34 nonsynonymous SNV NM_153598:c.A1034C:p.K345T exonic Ugt2b34 nonsynonymous SNV uc008xya.1:c.A1034C:p.K345T exonic ENSMUSG00000029260 nonsynonymous SNV ENSMUST00000031181:c.A1034C:p.K345T 5qE1 NA NA chr5 87322823 TTCxTGC T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 80 0 0 20.508452 0.346154 0.02 -0.227965 17 9 478 235 60 60 0 0 TT 14.437607 48 0 1338 0 KEEP - Ugt2b34 NO AA_3 chr5 90127283 90127283 T G exonic Adamts3 nonsynonymous SNV NM_001081401:c.A2125C:p.N709H exonic Adamts3 nonsynonymous SNV uc008yaq.2:c.A2125C:p.N709H exonic ENSMUSG00000043635 nonsynonymous SNV ENSMUST00000061427:c.A2125C:p.N709H 5qE1 NA NA chr5 90127283 AATxGTC T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 68 0 0 14.407645 0.285714 0.02 -0.18413 15 6 402 170 60 60 0 0 TT 11.730114 39 0 1075 0 KEEP - Adamts3 NO AA_3 chr6 112237930 112237930 T A ncRNA_exonic 5031434C07Rik NA NA ncRNA_exonic AK087115 NA NA exonic ENSMUSG00000044574 nonsynonymous SNV ENSMUST00000053559:c.A226T:p.T76S 6qE3 NA NA chr6 112237930 CAGxGTG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.83568 0.835716 0.999957 67 0 0 47.353901 0.486486 0.02 -0.324395 19 18 495 499 60 60 0 0 TT 7.819255 26 0 704 0 KEEP - 5031434C07Rik YES AA_3 chr6 118334227 118334227 C T intronic Bms1 NA NA intronic Bms1 NA NA intronic ENSMUSG00000030138 NA NA 6qF1 NA NA chr6 118334227 ATGxAAA C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 48 0 0 39.592553 0.652174 0.02 -0.201649 8 15 226 389 60 60 0 0 CC 5.113794 17 0 481 0 KEEP - Bms1 NO AA_3 chr6 124914744 124914744 C G exonic Cops7a nonsynonymous SNV NM_001164089:c.G160C:p.E54Q exonic Cops7a nonsynonymous SNV uc009dsr.2:c.G160C:p.E54Q exonic ENSMUSG00000030127 nonsynonymous SNV ENSMUST00000032220:c.G160C:p.E54Q 6qF2 NA NA chr6 124914744 CCTxTCT C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 48 1 0 14.316366 0.315789 0.02 -0.166628 13 6 380 166 60 60 0 0 CC 8.421955 28 0 790 0 KEEP - Cops7a NO AA_3 chr6 125121714 125121714 T C exonic Ncapd2 nonsynonymous SNV NM_146171:c.A3053G:p.Y1018C exonic Ncapd2 nonsynonymous SNV uc009dtt.1:c.A3053G:p.Y1018C exonic ENSMUSG00000038252 nonsynonymous SNV ENSMUST00000043848:c.A3053G:p.Y1018C 6qF3 NA NA chr6 125121714 CTGxATA T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 170 0 0 105.526486 0.493671 0.02 1.100858 40 39 1044 1107 60 60 0 0 TT 21.91889 73 0 1913 0 KEEP - Ncapd2 NO AA_3 chr6 132901621 132901621 A T exonic Tas2r129 nonsynonymous SNV NM_207029:c.A502T:p.T168S exonic Tas2r129 nonsynonymous SNV uc009ejv.1:c.A502T:p.T168S exonic ENSMUSG00000063762 nonsynonymous SNV ENSMUST00000070991:c.A502T:p.T168S 6qG1 NA NA chr6 132901621 TTCxCTT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 97 0 0 70.990987 0.530612 0.02 -0.429649 23 26 611 733 60 60 0 0 AA 13.527647 45 0 1205 0 KEEP + Tas2r129 YES AA_3 chr6 136699600 136699600 T G intronic Gucy2c NA NA intronic Gucy2c NA NA intronic ENSMUSG00000042638 NA NA 6qG1 NA NA chr6 136699600 TATxTTA T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582561 0.58293 0.999366 49 0 0 36.980761 0.538462 0.02 -0.227978 12 14 335 381 60 60 0 0 TT 5.113433 17 0 474 0 KEEP - Gucy2c NO AA_3 chr6 136856661 136856661 G A exonic Erp27 nonsynonymous SNV NM_026983:c.C659T:p.P220L exonic Erp27 nonsynonymous SNV uc009emm.1:c.C659T:p.P220L exonic ENSMUSG00000030219 nonsynonymous SNV ENSMUST00000032343:c.C659T:p.P220L 6qG1 NA NA chr6 136856661 GCTxGCA G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 80 0 0 22.061345 0.263158 0.02 -0.333225 28 10 798 268 60 60 0 0 GG 10.527816 35 0 981 0 KEEP - Erp27 NO AA_3 chr6 141436460 141436460 T A exonic Pde3a nonsynonymous SNV NM_018779:c.T2546A:p.V849D exonic Pde3a nonsynonymous SNV uc009eoo.1:c.T2546A:p.V849D exonic ENSMUSG00000041741 nonsynonymous SNV ENSMUST00000043259:c.T2546A:p.V849D 6qG2 NA NA chr6 141436460 TGGxTGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780976 0.78106 0.999892 63 0 0 45.269347 0.529412 0.02 -0.298096 16 18 443 469 60 60 0 0 TT 6.905678 23 0 618 0 KEEP + Pde3a YES AA_3 chr6 142061415 142061415 T A exonic Slco1a6 nonsynonymous SNV NM_023718:c.A658T:p.I220F exonic Slco1a6 nonsynonymous SNV uc009eow.2:c.A658T:p.I220F exonic ENSMUSG00000079262 nonsynonymous SNV ENSMUST00000111827:c.A658T:p.I220F 6qG2 NA NA chr6 142061415 AAAxGTT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 72 0 0 32.677367 0.361111 0.02 -0.315647 23 13 611 367 60 60 0 0 TT 8.420607 28 0 757 0 KEEP - Slco1a6 YES AA_3 chr6 31478476 31478476 A T exonic Podxl nonsynonymous SNV NM_013723:c.T631A:p.W211R exonic Podxl nonsynonymous SNV uc009bgh.2:c.T631A:p.W211R exonic ENSMUSG00000025608 nonsynonymous SNV ENSMUST00000026698:c.T631A:p.W211R 6qA3.3 NA NA chr6 31478476 TCCxTGT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976864 0.976865 0.999999 112 4 0 65.468716 0.454545 0.02 1.311306 30 25 784 700 60 60 0 0 AA 10.514074 35 0 933 0 KEEP - Podxl YES AA_3 chr6 42091681 42091681 T C exonic Tas2r139 synonymous SNV NM_181275:c.T747C:p.F249F exonic Tas2r139 synonymous SNV uc009bqm.1:c.T747C:p.F249F exonic ENSMUSG00000047102 synonymous SNV ENSMUST00000057686:c.T747C:p.F249F 6qB2.1 NA NA chr6 42091681 TTTxCTC T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851947 0.851984 0.999957 65 1 0 42.441339 0.432432 0.02 -0.33323 21 16 582 458 60 60 0 0 TT 7.817983 26 0 706 0 KEEP + Tas2r139 NO AA_3 chr6 42846721 42846721 T A exonic Olfr448 synonymous SNV NM_146273:c.T270A:p.S90S exonic Olfr448 synonymous SNV uc009bsa.1:c.T270A:p.S90S exonic ENSMUSG00000043119 synonymous SNV ENSMUST00000058668:c.T270A:p.S90S 6qB2.1 NA NA chr6 42846721 ATCxATT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 223 0 0 11.243383 0.074468 0.02 0.765241 87 7 2350 187 60 60 0 0 TT 31.868444 106 0 2864 0 KEEP + Olfr448 YES AA_3 chr6 48442237 48442237 A T intronic Sspo NA NA intronic Sspo NA NA intronic ENSMUSG00000029797 NA NA 6qB2.3 NA NA chr6 48442237 TCTxGAA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 130 0 0 64.176623 0.5 0.02 1.248223 25 25 686 673 60 60 0 0 AA 19.852292 66 0 1848 0 KEEP + Sspo YES AA_3 chr6 48715285 48715285 A T exonic Gimap3 nonsynonymous SNV NM_031247:c.T709A:p.Y237N exonic Gimap3 nonsynonymous SNV uc009bvt.1:c.T709A:p.Y237N exonic ENSMUSG00000039264 nonsynonymous SNV ENSMUST00000038811:c.T709A:p.Y237N 6qB2.3 NA NA chr6 48715285 TATxGGC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 303 0 0 222.887588 0.57931 0.02 2.1191 61 84 1679 2257 60 60 0 0 AA 39.092858 130 0 3571 0 KEEP - Gimap3 YES AA_3 chr6 49213241 49213241 T A intronic Tra2a NA NA UTR3 "AK076606,mAWMS1" NA NA intronic ENSMUSG00000029817 NA NA 6qB2.3 NA NA chr6 49213241 CGTxGAC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 96 0 0 15.337411 0.212121 0.02 -0.298097 26 7 695 194 60 60 0 0 TT 14.133407 47 0 1275 0 KEEP - Tra2a YES AA_3 chr6 57850795 57850795 A C exonic Vmn1r22 nonsynonymous SNV NM_134178:c.T190G:p.L64V exonic Vmn1r22 nonsynonymous SNV uc009ccr.1:c.T190G:p.L64V exonic ENSMUSG00000059362 nonsynonymous SNV ENSMUST00000079870:c.T190G:p.L64V 6qB3 NA NA chr6 57850795 ATAxGTC A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 248 0 0 67.703346 0.372093 0.02 0.843809 54 32 1498 771 60 60 0 0 AA 40.901054 136 0 3792 0 KEEP - Vmn1r22 NO AA_3 chr6 68967066 68967066 A C intergenic "4930515G16Rik(dist=1451373),Rprl1(dist=309865)" NA NA ncRNA_intronic abParts NA NA exonic ENSMUSG00000076540 nonsynonymous SNV ENSMUST00000103341:c.T9G:p.F3L 6qC1 "Score=0.941292;Name=No.93790,chr6:69115353" NA chr6 68967066 CTGxAAA A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 613 2 15 9.807539 0.042553 0.02 2.35073 135 6 3747 177 60 60 0 1 AA 109.390913 364 0 10073 0 KEEP NA 4930515G16Rik NO AA_3 chr6 73092368 73092368 A T exonic Dnah6 nonsynonymous SNV NM_001164669:c.T4525A:p.L1509M exonic Dnahc6 nonsynonymous SNV uc009cjk.2:c.T4525A:p.L1509M exonic ENSMUSG00000052861 nonsynonymous SNV ENSMUST00000114040:c.T4369A:p.L1457M 6qC1 NA NA chr6 73092368 CCAxGCC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 90 0 0 37.942871 0.4 0.02 -0.359341 24 16 655 420 60 60 0 0 AA 11.731099 39 0 1092 0 KEEP - Dnah6 YES AA_3 chr6 78356495 78356495 T C exonic Reg2 nonsynonymous SNV NM_009043:c.T206C:p.L69P exonic Reg2 nonsynonymous SNV uc009cjz.1:c.T206C:p.L69P exonic ENSMUSG00000023140 nonsynonymous SNV ENSMUST00000023906:c.T206C:p.L69P 6qC3 NA NA chr6 78356495 AGCxCTT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 132 0 0 13.607516 0.111111 0.02 1.143211 56 7 1534 198 60 60 0 0 TT 14.438433 48 0 1346 0 KEEP + Reg2 NO AA_3 chr6 90513447 90513447 A T exonic Aldh1l1 nonsynonymous SNV NM_027406:c.A719T:p.Q240L exonic Aldh1l1 nonsynonymous SNV uc009cxl.1:c.A719T:p.Q240L exonic ENSMUSG00000030088 nonsynonymous SNV ENSMUST00000032175:c.A719T:p.Q240L 6qD1 NA NA chr6 90513447 GGCxGGT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 68 0 0 50.370154 0.59375 0.02 -0.280557 13 19 354 507 60 60 0 0 AA 8.42138 28 0 776 0 KEEP + Aldh1l1 YES AA_3 chr6 91449523 91449523 A G exonic Xpc synonymous SNV NM_009531:c.T1587C:p.C529C exonic Xpc synonymous SNV uc009cyd.1:c.T1587C:p.C529C exonic ENSMUSG00000030094 synonymous SNV ENSMUST00000032182:c.T1587C:p.C529C 6qD1 NA NA chr6 91449523 CTCxCAG A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 274 4 0 76.20166 0.390805 0.02 1.02264 53 34 1397 853 60 60 0 0 AA 41.179354 137 0 3663 0 KEEP - Xpc NO AA_3 chr6 97373440 97373440 A T intronic Frmd4b NA NA intronic Frmd4b NA NA intronic ENSMUSG00000030064 NA NA 6qD3 NA NA chr6 97373440 GGTxTCC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 319 2 0 136.783827 0.490741 0.02 2.435031 55 53 1389 1440 60 60 0 0 AA 47.503013 158 0 4129 0 KEEP - Frmd4b YES AA_3 chr7 107554599 107554599 A T exonic C2cd3 unknown UNKNOWN exonic C2cd3 synonymous SNV uc009imy.1:c.A69T:p.A23A exonic ENSMUSG00000047248 synonymous SNV ENSMUST00000119647:c.A69T:p.A23A 7qE3 NA NA chr7 107554599 GGCxGCT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 91 2 0 45.288139 0.695652 0.02 -0.210415 7 16 197 438 60 60 0 0 AA 18.950341 63 0 1765 0 KEEP + C2cd3 YES AA_3 chr7 109727672 109727672 T A exonic Olfr550 nonsynonymous SNV NM_147104:c.T662A:p.L221Q exonic Olfr550 nonsynonymous SNV uc009iry.2:c.T662A:p.L221Q exonic ENSMUSG00000073975 nonsynonymous SNV ENSMUST00000098225:c.T662A:p.L221Q 7qE3 NA NA chr7 109727672 CTCxGAT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 305 3 0 63.508439 0.3 0.02 0.906068 63 27 1724 745 60 60 0 0 TT 54.134792 180 0 4937 0 KEEP + Olfr550 YES AA_3 chr7 110880834 110880834 T A exonic Olfr628 synonymous SNV NM_147097:c.T393A:p.P131P exonic Olfr628 synonymous SNV uc012frc.1:c.T393A:p.P131P exonic ENSMUSG00000073941 synonymous SNV ENSMUST00000098193:c.T393A:p.P131P 7qE3 NA NA chr7 110880834 TCCxCTA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 107 1 14 14.237816 0.2 0.02 -0.306888 28 7 773 185 60 60 0 0 TT 18.640764 62 0 1734 0 KEEP + Olfr628 YES AA_3 chr7 112041895 112041895 A T exonic Olfr666 nonsynonymous SNV NM_147096:c.T246A:p.N82K exonic Olfr666 nonsynonymous SNV uc009ixb.1:c.T246A:p.N82K exonic ENSMUSG00000063582 nonsynonymous SNV ENSMUST00000081116:c.T246A:p.N82K 7qE3 NA NA chr7 112041895 CATxTTG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 129 0 0 33.06762 0.27451 0.02 1.248137 37 14 943 394 60 60 0 0 AA 19.846898 66 0 1760 0 KEEP - Olfr666 YES AA_3 chr7 112478097 112478097 G A exonic Olfr690 nonsynonymous SNV NM_020290:c.C608T:p.S203L exonic Olfr690 nonsynonymous SNV uc009ixv.2:c.C608T:p.S203L exonic ENSMUSG00000050266 nonsynonymous SNV ENSMUST00000061920:c.C608T:p.S203L 7qE3 NA NA chr7 112478097 ACCxAGA G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 65 0 0 19.115393 0.32 0.02 -0.21903 17 8 399 221 60 60 0 0 GG 10.511281 35 0 868 0 KEEP - Olfr690 NO AA_3 chr7 125896296 125896296 A T intronic 9030624J02Rik NA NA intronic 9030624J02Rik NA NA intronic ENSMUSG00000030982 NA NA 7qF2 NA NA chr7 125896296 AGAxGAC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 81 0 0 25.618102 0.407407 0.02 -0.23671 16 11 440 283 60 60 0 0 AA 12.632324 42 0 1166 0 KEEP + 9030624J02Rik YES AA_3 chr7 127003092 127003092 T C exonic Dcun1d3 nonsynonymous SNV NM_001163703:c.A233G:p.E78G exonic Dcun1d3 nonsynonymous SNV uc009jly.2:c.A233G:p.E78G exonic ENSMUSG00000048787 nonsynonymous SNV ENSMUST00000059851:c.A233G:p.E78G 7qF2 NA NA chr7 127003092 GACxCCC T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 205 0 0 47.471177 0.351852 0.02 1.222326 35 19 926 536 60 60 0 0 TT 37.222054 124 0 3390 0 KEEP - Dcun1d3 NO AA_3 chr7 127437820 127437820 A T intronic Abca14 NA NA intronic Abca14 NA NA intronic ENSMUSG00000062017 NA NA 7qF2 NA NA chr7 127437820 CAGxGTA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161282 0.162467 0.992708 28 0 0 11.826655 0.384615 0.02 -0.113859 8 5 204 132 60 60 0 0 AA 3.00799 10 0 280 0 KEEP + Abca14 YES AA_3 chr7 128851113 128851113 A T upstream Usp31 NA NA upstream Usp31 NA NA UTR3 ENSMUSG00000053081 NA NA 7qF2 NA NA chr7 128851113 TCAxGAC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 66 0 0 15.86341 0.318182 0.02 -0.201667 15 7 414 185 60 60 0 0 AA 9.625554 32 0 898 0 KEEP - Usp31 YES AA_3 chr7 133730009 133730009 A T exonic Apobr nonsynonymous SNV NM_138310:c.A1177T:p.R393W exonic Apob48r nonsynonymous SNV uc009jsb.1:c.A1177T:p.R393W exonic ENSMUSG00000042759 nonsynonymous SNV ENSMUST00000039522:c.A1177T:p.R393W 7qF3 NA NA chr7 133730009 TCCxGGG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260933 0.260965 0.999879 42 1 0 8.702001 0.25 0.02 -0.140294 12 4 332 107 60 60 0 0 AA 6.614815 22 0 595 0 KEEP + Apobr YES AA_3 chr7 142350299 142350299 T G intronic Dock1 NA NA intronic Dock1 NA NA intronic ENSMUSG00000058325 NA NA 7qF3 NA NA chr7 142350299 GGGxTCA T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 179 1 0 58.219498 0.370968 0.02 1.24998 39 23 1038 650 60 60 0 0 TT 25.178524 84 0 2228 0 KEEP + Dock1 NO AA_3 chr7 146407341 146407341 C G exonic Lrrc27 synonymous SNV NM_027164:c.C417G:p.P139P exonic Lrrc27 synonymous SNV uc009kfm.1:c.C417G:p.P139P exonic ENSMUSG00000015980 synonymous SNV ENSMUST00000016124:c.C417G:p.P139P 7qF4 NA NA chr7 146407341 ACCxGTT C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 59 0 0 37.818439 0.736842 0.02 -0.166469 5 14 114 359 60 60 0 0 CC 9.313635 31 0 773 0 KEEP + Lrrc27 NO AA_3 chr7 17379175 17379175 G A exonic Slc1a5 nonsynonymous SNV NM_009201:c.G1046A:p.R349Q exonic Slc1a5 nonsynonymous SNV uc009fib.1:c.G1046A:p.R349Q exonic ENSMUSG00000001918 nonsynonymous SNV ENSMUST00000108496:c.G1046A:p.R349Q 7qA2 NA NA chr7 17379175 ATCxATT G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 166 1 0 27.333827 0.272727 0.02 -0.385637 32 12 824 328 60 60 0 0 GG 29.442775 98 0 2499 0 KEEP + Slc1a5 NO AA_3 chr7 17636056 17636056 A C exonic Hif3a synonymous SNV NM_001162950:c.T612G:p.T204T exonic Hif3a synonymous SNV uc009fir.2:c.T606G:p.T202T exonic ENSMUSG00000004328 synonymous SNV ENSMUST00000037762:c.T606G:p.T202T 7qA2 NA NA chr7 17636056 GGAxGTC A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 153 0 0 30.938254 0.294118 0.02 1.150265 36 15 983 372 60 60 0 0 AA 23.458637 78 0 2158 0 KEEP - Hif3a NO AA_3 chr7 27604215 27604215 C T exonic Cyp2g1 nonsynonymous SNV NM_013809:c.C1135T:p.H379Y exonic Cyp2g1 nonsynonymous SNV uc009fuu.1:c.C1135T:p.H379Y exonic ENSMUSG00000049685 nonsynonymous SNV ENSMUST00000040944:c.C1135T:p.H379Y 7qA3 "Score=0.974651;Name=No.100280,chr7:27077214" NA chr7 27604215 ACTxATT C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999997 68 0 4 44.54288 0.548387 0.02 -0.271679 14 17 390 457 60 60 0 0 CC 10.528997 35 0 1002 0 KEEP + Cyp2g1 NO AA_3 chr7 28925274 28925274 A G exonic 9530053A07Rik nonsynonymous SNV NM_001164655:c.A1492G:p.S498G exonic 9530053A07Rik nonsynonymous SNV uc009fxw.1:c.A1492G:p.S498G exonic ENSMUSG00000078776 nonsynonymous SNV ENSMUST00000150948:c.A1492G:p.S498G 7qA3 NA NA chr7 28925274 GGAxGTC A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 107 0 0 13.746851 0.214286 0.02 -0.24553 22 6 611 172 60 60 0 0 AA 18.348174 61 0 1701 0 KEEP + 9530053A07Rik NO AA_3 chr7 48446953 48446953 C T intergenic "Gm4884(dist=146281),Gm5592(dist=92744)" NA NA intergenic "Gm4884(dist=146281),Gm5592(dist=92744)" NA NA intergenic "ENSMUSG00000078737(dist=33287),ENSMUSG00000049062(dist=55438)" NA NA 7qB3 "Score=0.965278;Name=No.83501,chr3:54285345" NA chr7 48446953 CAGxTGA C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 178 2 1 8.729432 0.113636 0.02 -0.385854 39 5 1117 131 60 29 0 0 CC 31.700049 115 1 3210 27 KEEP NA Gm4884 NO AA_3 chr7 51058992 51058992 A G exonic Klk8 synonymous SNV NM_008940:c.A636G:p.S212S exonic Klk8 synonymous SNV uc009gns.1:c.A636G:p.S212S exonic ENSMUSG00000064023 synonymous SNV ENSMUST00000085461:c.A636G:p.S212S 7qB4 NA NA chr7 51058992 CTCxGGA A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 119 0 1 18.794898 0.27027 0.02 -0.324318 27 10 738 234 60 60 0 0 AA 19.248843 64 0 1760 0 KEEP + Klk8 NO AA_3 chr7 58880731 58880731 A T exonic Slc17a6 nonsynonymous SNV NM_080853:c.A167T:p.K56M exonic Slc17a6 nonsynonymous SNV uc009hcf.2:c.A167T:p.K56M exonic ENSMUSG00000030500 nonsynonymous SNV ENSMUST00000032710:c.A167T:p.K56M 7qB5 NA NA chr7 58880731 AGAxGGC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999999 66 0 0 45.806385 0.708333 0.02 -0.210404 7 17 194 440 60 60 0 0 AA 10.527788 35 0 978 0 KEEP + Slc17a6 YES AA_3 chr7 6919775 6919775 A T ncRNA_UTR3 Usp29 NA NA ncRNA_UTR3 Usp29 NA NA intergenic "ENSMUSG00000051527(dist=3295),ENSMUSG00000070837(dist=28379)" NA NA 7qA1 NA NA chr7 6919775 GCTxCAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 205 2 0 38.389015 0.285714 0.02 1.195545 40 16 1024 453 60 60 0 0 AA 37.27694 124 0 3280 0 KEEP + Usp29 YES AA_3 chr7 73076658 73076658 T A intronic Pcsk6 NA NA intronic Pcsk6 NA NA intronic ENSMUSG00000030513 NA NA 7qC NA NA chr7 73076658 AGGxGAG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 131 0 0 7.055522 0.088889 0.02 -0.394445 41 4 1068 110 60 60 0 0 TT 21.640361 72 0 1933 0 KEEP + Pcsk6 YES AA_3 chr7 86593794 86593794 A C exonic Fanci nonsynonymous SNV NM_145946:c.A3806C:p.K1269T exonic Fanci nonsynonymous SNV uc009hyh.1:c.A3806C:p.K1269T exonic ENSMUSG00000039187 nonsynonymous SNV ENSMUST00000036865:c.A3806C:p.K1269T 7qD3 NA NA chr7 86593794 AAAxGTC A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 83 0 0 20.652604 0.344828 0.02 -0.254215 19 10 536 240 60 60 0 0 AA 13.536502 45 0 1272 0 KEEP + Fanci NO AA_3 chr7 87878987 87878987 A C exonic Iqgap1 nonsynonymous SNV NM_016721:c.T3214G:p.L1072V exonic Iqgap1 nonsynonymous SNV uc009ibc.2:c.T3214G:p.L1072V exonic ENSMUSG00000030536 nonsynonymous SNV ENSMUST00000032751:c.T3286G:p.L1096V 7qD3 NA NA chr7 87878987 CCAxGAT A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 75 0 0 12.130479 0.26087 0.02 -0.201652 17 6 473 150 60 60 0 0 AA 13.834166 46 0 1261 0 KEEP - Iqgap1 NO AA_3 chr7 9747242 9747242 A C intronic Vmn2r44 NA NA intronic Vmn2r44 NA NA intronic ENSMUSG00000091178 NA NA 7qA1 "Score=0.971577;Name=No.96654,chr7:7479578" NA chr7 9747242 TTAxCAT A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 436 3 127 23.88628 0.161765 0.02 1.17104 57 11 1503 317 51 37 0 0 AA 93.228588 310 0 8375 0 KEEP + Vmn2r44 NO AA_3 chr7 9747243 9747243 C A intronic Vmn2r44 NA NA intronic Vmn2r44 NA NA intronic ENSMUSG00000091178 NA NA 7qA1 "Score=0.971577;Name=No.96654,chr7:7479578" NA chr7 9747243 TAAxATC C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 428 3 128 22.686024 0.161765 0.02 1.072558 57 11 1656 305 55 37 0 0 CC 91.142652 303 0 8697 0 KEEP + Vmn2r44 NO AA_3 chr7 97576208 97576208 A G UTR3 Ccdc89 NA NA UTR3 Ccdc89 NA NA UTR3 ENSMUSG00000044362 NA NA 7qE1 NA NA chr7 97576208 AAGxGAA A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 187 2 0 43.468692 0.290323 0.02 1.249838 44 18 1234 511 60 60 0 0 AA 27.974946 93 0 2619 0 KEEP + Ccdc89 NO AA_3 chr8 107041876 107041876 T A intronic Nae1 NA NA intronic Nae1 NA NA intronic ENSMUSG00000031878 NA NA 8qD3 NA NA chr8 107041876 CTCxAGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 79 0 0 75.942475 0.658537 0.02 -0.359491 14 27 372 745 60 60 0 0 TT 7.168699 28 1 765 11 KEEP - Nae1 YES AA_3 chr8 107485709 107485709 A T exonic Ces2g nonsynonymous SNV NM_197999:c.A22T:p.S8C exonic "2210023G05Rik,Ces2g" nonsynonymous SNV uc009nbj.2:c.A22T:p.S8C exonic ENSMUSG00000031877 nonsynonymous SNV ENSMUST00000043183:c.A22T:p.S8C 8qD3 NA NA chr8 107485709 CATxGCT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 299 0 0 240.610646 0.693548 0.02 2.205363 38 86 1020 2328 60 60 0 0 AA 35.462739 118 0 3225 0 KEEP + Ces2g YES AA_3 chr8 108822442 108822442 T A intronic Smpd3 NA NA ncRNA_intronic AK015712 NA NA ncRNA_exonic ENSMUSG00000074113 NA NA 8qD3 NA NA chr8 108822442 GGCxGCA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 232 1 0 90.731334 0.322034 0.02 2.355875 80 38 2150 1048 60 60 0 0 TT 30.368998 101 0 2756 0 KEEP - Smpd3 YES AA_3 chr8 113873278 113873278 T A splicing Fa2h(NM_178086:exon6:c.614-2A>T) NA NA splicing "Fa2h(uc009nmf.2:exon6:c.614-2A>T,uc009nmg.2:exon6:c.614-2A>T)" NA NA splicing "ENSMUSG00000033579(ENSMUST00000093130:exon6:c.614-2A>T,ENSMUST00000038475:exon6:c.614-2A>T)" NA NA 8qE1 NA NA chr8 113873278 CTCxGCA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781006 0.78106 0.999931 67 1 0 62.303218 0.647059 0.02 -0.298136 12 22 326 614 60 60 0 0 TT 7.501694 25 0 656 0 KEEP - Fa2h YES AA_3 chr8 11721771 11721771 T A intergenic "Gm6524(dist=27257),Arhgef7(dist=6334)" NA NA intergenic "Gm6524(dist=27257),Arhgef7(dist=6334)" NA NA ncRNA_exonic ENSMUSG00000031510 NA NA 8qA1.1 NA NA chr8 11721771 CAAxGGA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 147 0 0 67.550867 0.333333 0.02 0.959145 56 28 1436 774 60 60 0 0 TT 15.63496 52 0 1383 0 KEEP NA Gm6524 YES AA_3 chr8 124980436 124980436 G C exonic Snai3 nonsynonymous SNV NM_013914:c.C269G:p.T90S exonic Snai3 nonsynonymous SNV uc009nsw.1:c.C269G:p.T90S exonic ENSMUSG00000006587 nonsynonymous SNV ENSMUST00000006762:c.C269G:p.T90S 8qE1 NA NA chr8 124980436 CTGxTTT G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 94 0 0 12.121814 0.139535 0.02 -0.385833 37 6 1035 168 60 60 0 0 GG 11.429242 38 0 1048 0 KEEP - Snai3 NO AA_3 chr8 125304518 125304518 C T exonic Acsf3 nonsynonymous SNV NM_144932:c.C649T:p.R217C exonic Acsf3 nonsynonymous SNV uc009ntr.1:c.C649T:p.R217C exonic ENSMUSG00000015016 nonsynonymous SNV ENSMUST00000015160:c.C649T:p.R217C 8qE1 NA NA chr8 125304518 CACxGTA C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 36 0 0 17.926559 0.5 0.02 -0.131445 7 7 165 188 60 60 0 0 CC 5.405602 18 0 427 0 KEEP + Acsf3 NO AA_3 chr8 12632265 12632265 T A exonic Tubgcp3 nonsynonymous SNV NM_198031:c.A2053T:p.N685Y exonic "Tubgcp3,mKIAA0357" nonsynonymous SNV uc012fzp.1:c.A829T:p.N277Y exonic ENSMUSG00000000759 nonsynonymous SNV ENSMUST00000000776:c.A2053T:p.N685Y 8qA1.1 NA NA chr8 12632265 CGTxGCA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 300 0 0 218.118503 0.666667 0.02 2.330356 40 80 1060 2131 60 60 0 0 TT 42.704367 142 0 3883 0 KEEP - Tubgcp3 YES AA_3 chr8 126568974 126568974 T C intronic Urb2 NA NA ncRNA_intronic mKIAA0133 NA NA intronic "ENSMUSG00000031976,ENSMUSG00000092329" NA NA 8qE2 NA NA chr8 126568974 GTCxGTA T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 94 0 0 86.943382 0.731707 0.02 -0.359489 11 30 302 830 60 60 0 0 TT 11.729295 39 0 1078 0 KEEP + Urb2 NO AA_3 chr8 127347052 127347052 A C exonic Trim67 nonsynonymous SNV NM_198632:c.A1520C:p.K507T exonic Trim67 nonsynonymous SNV uc012gmz.1:c.A1520C:p.K507T exonic ENSMUSG00000036913 nonsynonymous SNV ENSMUST00000041106:c.A1520C:p.K507T 8qE2 NA NA chr8 127347052 AGAxGTG A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 104 0 0 41.025732 0.4 0.02 -0.394471 27 18 742 456 60 60 0 0 AA 12.030532 40 0 1110 0 KEEP + Trim67 NO AA_3 chr8 13837145 13837145 G A exonic AF366264 synonymous SNV NM_153093:c.C945T:p.I315I exonic AF366264 synonymous SNV uc012gaa.1:c.C945T:p.I315I exonic ENSMUSG00000057116 synonymous SNV ENSMUST00000071308:c.C945T:p.I315I 8qA1.1 "Score=0.937247;Name=No.11239,chr10:21784576" NA chr8 13837145 CTGxATG G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 354 2 38 62.474608 0.219697 0.02 2.224959 103 29 2897 788 60 60 0 0 GG 52.566207 175 0 4916 0 KEEP - AF366264 NO AA_3 chr8 15041766 15041766 C T ncRNA_exonic BB014433 NA NA exonic BB014433 synonymous SNV uc009kzl.1:c.G1086A:p.R362R exonic ENSMUSG00000049008 synonymous SNV ENSMUST00000050493:c.G1086A:p.R362R 8qA1.1 NA NA chr8 15041766 CACxCGG C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 135 1 15 8.740033 0.115385 0.02 1.141605 46 6 1279 139 60 60 0 0 CC 15.576163 52 0 1413 0 KEEP - BB014433 NO AA_3 chr8 19201178 19201178 C A exonic Defb4 synonymous SNV NM_019728:c.C60A:p.A20A exonic Defb4 synonymous SNV uc009laj.2:c.C60A:p.A20A exonic ENSMUSG00000059230 synonymous SNV ENSMUST00000081017:c.C60A:p.A20A 8qA1.3 NA NA chr8 19201178 AGCxTTT C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 92 0 0 11.027203 0.15 0.02 -0.350758 34 6 967 155 60 60 0 0 CC 12.612921 42 0 1162 0 KEEP + Defb4 NO AA_3 chr8 19785041 19785041 C G intergenic "4930467E23Rik(dist=31439),6820431F20Rik(dist=78823)" NA NA exonic 5330429B09Rik nonsynonymous SNV uc009lat.1:c.C296G:p.A99G ncRNA_exonic ENSMUSG00000059078 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:20006570" NA chr8 19785041 GGGxGGG C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 107 3 12 7.239241 0.093023 0.02 -0.385301 39 4 879 111 60 23 0 0 CC 13.50654 45 0 1039 0 KEEP NA 4930467E23Rik NO AA_3 chr8 3536608 3536608 A T exonic Pnpla6 synonymous SNV NM_015801:c.A2769T:p.A923A exonic Pnpla6 synonymous SNV uc009krt.1:c.A2853T:p.A951A exonic ENSMUSG00000004565 synonymous SNV ENSMUST00000004681:c.A2769T:p.A923A 8qA1.1 NA NA chr8 3536608 GGCxCGA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73962 0.739671 0.999931 66 0 0 44.599281 0.53125 0.02 -0.280558 15 17 399 461 60 60 0 0 AA 7.517902 25 0 668 0 KEEP + Pnpla6 YES AA_3 chr8 4087984 4087984 A T intergenic "Cd209c(dist=141121),Cd209f(dist=14809)" NA NA intergenic "Cd209c(dist=141121),Cd209f(dist=14809)" NA NA ncRNA_exonic ENSMUSG00000074482 NA NA 8qA1.1 "Score=0.921569;Name=No.16081,chr11:16542187" NA chr8 4087984 CCCxTTT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 188 0 0 143.288178 0.614458 0.02 1.065742 32 51 859 1430 60 60 0 0 AA 27.968629 93 0 2514 0 KEEP NA Cd209c YES AA_3 chr8 44710451 44710451 A T exonic Gm5346 nonsynonymous SNV NM_001025240:c.T2089A:p.Y697N exonic Gm5346 nonsynonymous SNV uc009log.1:c.T2089A:p.Y697N exonic ENSMUSG00000050190 nonsynonymous SNV ENSMUST00000056023:c.T2089A:p.Y697N 8qA4 NA NA chr8 44710451 CATxCAT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 203 0 2 136.367504 0.604938 0.02 0.985031 32 49 828 1366 60 60 0 0 AA 31.5707 105 0 2778 0 KEEP - Gm5346 YES AA_3 chr8 44711471 44711471 T A exonic Gm5346 nonsynonymous SNV NM_001025240:c.A1069T:p.T357S exonic Gm5346 nonsynonymous SNV uc009log.1:c.A1069T:p.T357S exonic ENSMUSG00000050190 nonsynonymous SNV ENSMUST00000056023:c.A1069T:p.T357S 8qA4 NA NA chr8 44711471 ATGxACA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 163 0 0 70.507192 0.358025 0.02 0.985648 52 29 1331 796 60 60 0 0 TT 21.022461 73 1 1939 8 KEEP - Gm5346 YES AA_3 chr8 46332169 46332169 C T exonic F11 synonymous SNV NM_028066:c.G1233A:p.Q411Q exonic F11 synonymous SNV uc009los.1:c.G1233A:p.Q411Q exonic ENSMUSG00000031645 synonymous SNV ENSMUST00000034064:c.G1233A:p.Q411Q 8qB1.1 NA NA chr8 46332169 TCCxTGG C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 156 0 0 84.493648 0.652174 0.02 -0.420919 16 30 459 831 60 60 0 0 CC 27.358555 91 0 2580 0 KEEP - F11 NO AA_3 chr8 67228660 67228660 T G intronic Klhl2 NA NA intronic Klhl2 NA NA intronic ENSMUSG00000031605 NA NA 8qB3.1 NA NA chr8 67228660 ACCxATT T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290363 0.292001 0.994391 34 0 0 19.506077 0.470588 0.02 -0.148976 9 8 231 208 60 60 0 0 TT 3.909014 13 0 346 0 KEEP - Klhl2 NO AA_3 chr8 72976427 72976427 A G exonic Klhl26 nonsynonymous SNV NM_001122830:c.T548C:p.F183S exonic Klhl26 nonsynonymous SNV uc012gfb.1:c.T548C:p.F183S exonic ENSMUSG00000055707 nonsynonymous SNV ENSMUST00000166976:c.T548C:p.F183S 8qB3.3 NA NA chr8 72976427 GGGxAGC A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835607 0.835716 0.999869 66 0 0 20.782016 0.243243 0.02 -0.324431 28 9 763 254 70 60 0 0 AA 6.308833 21 0 545 0 KEEP - Klhl26 NO AA_3 chr8 73456050 73456050 A T intergenic "Mir1969(dist=6533),1700026F02Rik(dist=74577)" NA NA intergenic "Mir1969(dist=6533),AK006380(dist=74577)" NA NA exonic ENSMUSG00000074252 stopgain SNV ENSMUST00000098653:c.A358T:p.K120X 8qB3.3 NA NA chr8 73456050 CCAxAGC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668451 0.668523 0.999892 56 0 0 50.0143 0.678571 0.02 -0.254227 9 19 249 486 60 60 0 0 AA 6.915687 23 0 625 0 KEEP NA Mir1969 YES AA_3 chr8 75231744 75231744 A T exonic Nwd1 nonsynonymous SNV NM_176940:c.A4069T:p.S1357C exonic Nwd1 nonsynonymous SNV uc009mgn.2:c.A3715T:p.S1239C exonic ENSMUSG00000048148 nonsynonymous SNV ENSMUST00000093427:c.A4195T:p.S1399C 8qB3.3 NA NA chr8 75231744 CACxGTG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.83564 0.835716 0.999909 66 0 0 45.039603 0.486486 0.02 -0.324314 19 18 525 476 60 60 0 0 AA 7.218276 24 0 666 0 KEEP + Nwd1 YES AA_3 chr8 85427979 85427979 T G intronic Rnf150 NA NA exonic Rnf150 nonsynonymous SNV uc009mjs.1:c.T284G:p.F95C exonic ENSMUSG00000047747 nonsynonymous SNV ENSMUST00000098607:c.T524G:p.F175C 8qC2 NA NA chr8 85427979 CATxTAG T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322777 0.322807 0.999909 48 0 0 9.069073 0.222222 0.02 -0.15784 14 4 389 113 60 60 0 0 TT 7.218408 24 0 668 0 KEEP + Rnf150 NO AA_3 chr8 9207957 9207957 C G exonic Fam155a nonsynonymous SNV NM_173446:c.G1190C:p.R397T exonic Fam155a nonsynonymous SNV uc009kuj.1:c.G1190C:p.R397T exonic ENSMUSG00000079157 nonsynonymous SNV ENSMUST00000110969:c.G1190C:p.R397T 8qA1.1 NA NA chr8 9207957 GGTxTGG C G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 83 0 0 42.797893 0.404762 0.02 -0.368304 25 17 707 470 60 60 0 0 CC 11.719245 39 0 1089 0 KEEP - Fam155a NO AA_3 chr8 96552820 96552820 A G exonic Nudt21 nonsynonymous SNV NM_026623:c.T386C:p.L129P exonic Nudt21 nonsynonymous SNV uc009mvo.1:c.T386C:p.L129P exonic ENSMUSG00000031754 nonsynonymous SNV ENSMUST00000034204:c.T386C:p.L129P 8qC5 NA NA chr8 96552820 CCAxGTA A G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 420 3 0 91.384329 0.26 0.02 2.370339 111 39 3110 1101 60 60 0 0 AA 64.671884 215 0 6028 0 KEEP - Nudt21 NO AA_3 chr9 106470742 106470742 A T exonic Iqcf4 nonsynonymous SNV NM_026090:c.T536A:p.L179Q exonic Iqcf4 nonsynonymous SNV uc009rkh.1:c.T536A:p.L179Q exonic ENSMUSG00000041009 nonsynonymous SNV ENSMUST00000085111:c.T536A:p.L179Q 9qF1 NA NA chr9 106470742 CGTxGTT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 102 2 0 42.699588 0.404762 0.02 -0.394554 25 17 672 469 60 60 0 0 AA 12.932326 43 0 1182 0 KEEP - Iqcf4 YES AA_3 chr9 106787782 106787782 T C exonic Rbm15b nonsynonymous SNV NM_175402:c.A1517G:p.Y506C exonic Rbm15b nonsynonymous SNV uc012gzz.1:c.A1517G:p.Y506C exonic ENSMUSG00000045365 nonsynonymous SNV ENSMUST00000055843:c.A1517G:p.Y506C 9qF1 NA NA chr9 106787782 TCAxAGT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 151 0 0 26.709002 0.191176 0.02 1.197533 55 13 1416 349 60 60 0 0 TT 20.747326 69 0 1826 0 KEEP - Rbm15b NO AA_3 chr9 108260687 108260687 A T intronic Usp4 NA NA intronic Usp4 NA NA intronic ENSMUSG00000032612 NA NA 9qF2 NA NA chr9 108260687 ATCxAAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 193 2 29 9.528257 0.135135 0.02 -0.324429 32 5 877 135 49 34 0 0 AA 35.788947 119 0 3266 0 KEEP + Usp4 YES AA_3 chr9 119426702 119426702 T A exonic Scn5a nonsynonymous SNV NM_001253860:c.A3001T:p.S1001C exonic Scn5a nonsynonymous SNV uc009sbd.1:c.A130T:p.S44C exonic ENSMUSG00000032511 nonsynonymous SNV ENSMUST00000065196:c.A3001T:p.S1001C 9qF3 NA NA chr9 119426702 GGCxGTG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 59 0 0 10.754228 0.208333 0.02 -0.210434 19 5 515 137 60 60 0 0 TT 8.721854 29 0 791 0 KEEP - Scn5a YES AA_3 chr9 120471163 120471163 A T intronic Entpd3 NA NA intronic Entpd3 NA NA intronic ENSMUSG00000041608 NA NA 9qF4 NA NA chr9 120471163 GCAxACA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 57 0 0 43.869259 0.62963 0.02 -0.236702 10 17 277 435 60 60 0 0 AA 8.387969 28 0 764 0 KEEP + Entpd3 YES AA_3 chr9 21606865 21606865 T C exonic Dock6 nonsynonymous SNV NM_177030:c.A5812G:p.T1938A exonic Dock6 nonsynonymous SNV uc009omn.1:c.A3469G:p.T1157A exonic ENSMUSG00000032198 nonsynonymous SNV ENSMUST00000086329:c.A5719G:p.T1907A 9qA3 NA NA chr9 21606865 GCGxCTT T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 171 1 0 71.479924 0.394366 0.02 1.144708 43 28 1138 788 60 60 0 0 TT 23.759942 79 0 2160 0 KEEP - Dock6 NO AA_3 chr9 22163010 22163010 C A intronic Anln NA NA intronic Anln NA NA intronic ENSMUSG00000036777 NA NA 9qA3 NA NA chr9 22163010 AGGxAGG C A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 43 0 0 34.712252 0.75 0.02 -0.140299 4 12 112 329 60 60 0 0 CC 6.316113 21 0 585 0 KEEP - Anln NO AA_3 chr9 24222895 24222895 T G intronic Dpy19l1 NA NA intronic Dpy19l1 NA NA ncRNA_exonic ENSMUSG00000074465 NA NA 9qA4 NA NA chr9 24222895 GGCxTCC T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 80 0 0 7.84129 0.128205 0.02 -0.341449 34 5 926 119 60 60 0 0 TT 8.121545 27 0 756 0 KEEP - Dpy19l1 NO AA_3 chr9 37226260 37226260 G A exonic Robo3 nonsynonymous SNV NM_001164767:c.C3344T:p.P1115L exonic Robo3 nonsynonymous SNV uc009ouw.1:c.C3278T:p.P1093L exonic ENSMUSG00000032128 nonsynonymous SNV ENSMUST00000034643:c.C3278T:p.P1093L 9qA4 NA NA chr9 37226260 GGTxGGC G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739567 0.739671 0.999859 53 0 0 61.552591 0.6875 0.02 -0.280591 10 22 288 597 60 60 0 0 GG 5.414642 18 0 511 0 KEEP - Robo3 NO AA_3 chr9 37950716 37950716 T A upstream Olfr890 NA NA upstream Olfr890 NA NA upstream ENSMUSG00000061096 NA NA 9qA4 NA NA chr9 37950716 CACxTAG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 146 0 0 114.983099 0.677419 0.02 1.053736 20 42 563 1119 60 60 0 0 TT 20.755709 69 0 1945 0 KEEP + Olfr890 YES AA_3 chr9 38635940 38635940 T A exonic Olfr923 nonsynonymous SNV NM_146816:c.T663A:p.F221L exonic Olfr923 nonsynonymous SNV uc009oxf.2:c.T663A:p.F221L exonic ENSMUSG00000044798 nonsynonymous SNV ENSMUST00000051238:c.T663A:p.F221L 9qA5.1 NA NA chr9 38635940 TTTxATC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 117 2 0 97.538082 0.73913 0.02 -0.412055 12 34 317 928 60 60 0 0 TT 17.742621 59 0 1587 0 KEEP + Olfr923 YES AA_3 chr9 38738110 38738110 T A exonic Olfr930 nonsynonymous SNV NM_146272:c.T353A:p.M118K exonic Olfr930 nonsynonymous SNV uc009oxj.1:c.T353A:p.M118K exonic ENSMUSG00000063221 nonsynonymous SNV ENSMUST00000058789:c.T353A:p.M118K 9qA5.1 NA NA chr9 38738110 TTAxGGC T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 128 4 0 98.028706 0.708333 0.02 -0.429643 14 34 368 944 60 60 0 0 TT 18.345115 61 0 1650 0 KEEP + Olfr930 YES AA_3 chr9 51810611 51810611 T A ncRNA_exonic Gm6981 NA NA exonic Gapdh nonsynonymous SNV uc012gth.1:c.A776T:p.K259M exonic ENSMUSG00000079558 nonsynonymous SNV ENSMUST00000088537:c.A776T:p.K259M 9qA5.3 "Score=0.947875;Name=No.104555,chr8:95239655" NA chr9 51810611 TTCxTGA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 310 9 11 8.678632 0.111111 0.02 -0.394523 40 5 1092 131 60 60 0 0 TT 67.341398 224 0 6235 0 KEEP - Gm6981 YES AA_3 chr9 53378457 53378457 C T exonic Npat nonsynonymous SNV NM_001081152:c.C3359T:p.P1120L exonic Npat nonsynonymous SNV uc009pmf.1:c.C3359T:p.P1120L exonic ENSMUSG00000033054 nonsynonymous SNV ENSMUST00000035850:c.C3359T:p.P1120L 9qA5.3 NA NA chr9 53378457 TGCxCAA C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 387 4 0 60.765517 0.245455 0.02 2.390737 83 27 2369 745 60 60 0 0 CC 60.988251 203 0 5637 0 KEEP + Npat NO AA_3 chr9 64576037 64576037 T G intronic Rab11a NA NA intronic Rab11a NA NA intronic ENSMUSG00000004771 NA NA 9qC NA NA chr9 64576037 AACxTAC T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 94 0 0 12.4934 0.175 0.02 -0.350651 33 7 907 172 60 60 0 0 TT 12.03076 40 0 1107 0 KEEP - Rab11a NO AA_3 chr9 65945230 65945230 T A exonic Snx1 nonsynonymous SNV NM_019727:c.A704T:p.E235V exonic Snx1 nonsynonymous SNV uc009qek.1:c.A704T:p.E235V exonic ENSMUSG00000032382 nonsynonymous SNV ENSMUST00000034946:c.A704T:p.E235V 9qC NA NA chr9 65945230 TTCxCAA T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 84 0 0 23.2781 0.333333 0.02 -0.263033 20 10 543 268 60 60 0 0 TT 12.934376 43 0 1206 0 KEEP - Snx1 YES AA_3 chr9 72584735 72584735 A T exonic Nedd4 nonsynonymous SNV NM_010890:c.A1976T:p.H659L exonic Nedd4 nonsynonymous SNV uc009qqe.1:c.A1976T:p.H659L exonic ENSMUSG00000032216 nonsynonymous SNV ENSMUST00000034740:c.A1976T:p.H659L 9qD NA NA chr9 72584735 TGCxCGA A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 85 0 0 29.63424 0.52381 0.02 -0.184135 10 11 271 307 60 60 0 0 AA 13.232715 44 0 1193 0 KEEP + Nedd4 YES AA_3 chr9 73780300 73780300 T A exonic Unc13c nonsynonymous SNV NM_001081153:c.A1075T:p.R359W exonic Unc13c nonsynonymous SNV uc009qrb.1:c.A1075T:p.R359W exonic ENSMUSG00000062151 nonsynonymous SNV ENSMUST00000075245:c.A1075T:p.R359W 9qD NA NA chr9 73780300 TCCxCTG T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 67 0 0 70.373502 0.757576 0.02 -0.2981 8 25 225 664 60 60 0 0 TT 8.723447 29 0 818 0 KEEP - Unc13c YES AA_3 chr9 78152250 78152250 A C exonic Gm10639 nonsynonymous SNV NM_001122660:c.A486C:p.E162D exonic Gm10639 nonsynonymous SNV uc009quc.1:c.A486C:p.E162D exonic ENSMUSG00000074179 nonsynonymous SNV ENSMUST00000121273:c.A486C:p.E162D 9qE1 "Score=0.938964;Name=No.105445,chr9:78178569" NA chr9 78152250 GGAxCTT A C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 98 0 0 26.927236 0.333333 0.02 -0.289325 22 11 580 308 60 60 0 0 AA 16.168148 54 0 1415 0 KEEP + Gm10639 NO AA_3 chr9 95632450 95632450 T A exonic Trpc1 nonsynonymous SNV NM_011643:c.A656T:p.K219M exonic Trpc1 nonsynonymous SNV uc009rbj.1:c.A212T:p.K71M exonic ENSMUSG00000032839 nonsynonymous SNV ENSMUST00000113006:c.A554T:p.K185M 9qE3.3 NA NA chr9 95632450 TTCxTGT T A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 60 0 0 34.434332 0.619048 0.02 -0.184126 8 13 226 343 60 60 0 0 TT 8.422192 28 0 781 0 KEEP - Trpc1 YES AA_3 chrX 121241416 121241416 T G exonic Vmn2r121 nonsynonymous SNV NM_001100616:c.A2515C:p.K839Q exonic Vmn2r121 nonsynonymous SNV uc009vfh.1:c.A874C:p.K292Q exonic ENSMUSG00000072049 nonsynonymous SNV ENSMUST00000096792:c.A2395C:p.K799Q XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121241416 TCTxTAT T G OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 268 13 16 14.718227 0.142857 0.02 1.109519 42 7 1175 201 60 37 0 0 TT 46.051087 163 1 4535 28 KEEP - Vmn2r121 NO AA_3 chrX 121246576 121246576 G A exonic Vmn2r121 synonymous SNV NM_001100616:c.C492T:p.F164F exonic Vmn2r121 synonymous SNV uc009uep.1:c.C492T:p.F164F exonic ENSMUSG00000072049 synonymous SNV ENSMUST00000071277:c.C492T:p.F164F XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121246576 AAAxAAA G A OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 479 27 4 10.732346 0.067416 0.02 2.303039 83 6 2416 174 60 37 0 0 GG 83.619529 278 0 7980 0 KEEP - Vmn2r121 NO AA_3 chrX 130608818 130608818 A T exonic Cstf2 synonymous SNV NM_133196:c.A1185T:p.L395L exonic Cstf2 synonymous SNV uc009ufi.1:c.A1185T:p.L395L exonic ENSMUSG00000031256 synonymous SNV ENSMUST00000136510:c.A543T:p.L181L XqE3 NA NA chrX 130608818 GCTxGAT A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 84 2 0 73.453977 1 0.02 -0.201665 0 23 0 625 0 60 0 0 AA 14.43776 48 0 1337 0 KEEP + Cstf2 YES AA_3 chrX 146592372 146592372 C T intergenic "Gm15127(dist=172847),Gm15104(dist=155122)" NA NA intergenic "Gm15091(dist=172847),Bmi1(dist=62887)" NA NA intergenic "ENSMUSG00000082522(dist=72531),ENSMUSG00000048592(dist=64534)" NA NA XqF3 "Score=0.919848;Name=No.107717,chrX:20775280" NA chrX 146592372 TTCxTTG C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 107 1 0 41.540227 0.432432 0.02 -0.324465 21 16 595 449 60 60 0 0 CC 16.536689 55 0 1536 0 KEEP NA Gm15127 NO AA_3 chrX 166414822 166414822 T C ncRNA_intronic G530011O06Rik NA NA ncRNA_intronic "Fxy,G530011O06Rik" NA NA ncRNA_intronic ENSMUSG00000072844 NA NA XqF5 NA NA chrX 166414822 AAAxTCA T C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 178 0 0 23.675051 0.123711 0.02 2.701612 85 12 2240 337 60 60 0 0 TT 17.743169 59 0 1588 0 KEEP - G530011O06Rik NO AA_3 chrX 166424918 166424918 C T intronic Mid1 NA NA intronic Mid1 NA NA intronic ENSMUSG00000035299 NA NA XqF5 NA NA chrX 166424918 GGCxCGA C T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865686 0.865745 0.999931 83 2 9 7.361895 0.105263 0.02 -0.341989 34 4 952 110 60 60 0 0 CC 9.92537 33 0 912 0 KEEP + Mid1 NO AA_3 chrX 50911403 50911403 A T exonic Cxx1c stopgain SNV NM_028375:c.A181T:p.K61X exonic Cxx1c stopgain SNV uc009tfd.1:c.A181T:p.K61X exonic ENSMUSG00000051851 stopgain SNV ENSMUST00000063384:c.A181T:p.K61X XqA5 "Score=0.96458;Name=No.112760,chrX:50956008" NA chrX 50911403 GACxAAC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 114 1 0 112.296544 0.948718 0.02 -0.3419 2 37 56 981 60 60 0 0 AA 21.05016 70 0 1910 0 KEEP + Cxx1c YES AA_3 chrX 62301753 62301753 G C intronic Ctag2 NA NA intronic Ctag2 NA NA intronic ENSMUSG00000031181 NA NA XqA7.1 NA NA chrX 62301753 TGAxGGT G C OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162465 0.162467 0.999988 44 0 0 8.725623 0.307692 0.02 -0.113806 9 4 238 103 60 60 0 0 GG 8.122213 27 0 770 0 KEEP + Ctag2 NO AA_3 chrX 70679448 70679448 G T exonic Trex2 nonsynonymous SNV NM_011907:c.C531A:p.H177Q exonic Trex2 nonsynonymous SNV uc009tlt.2:c.C531A:p.H177Q exonic ENSMUSG00000031372 nonsynonymous SNV ENSMUST00000033738:c.C531A:p.H177Q XqA7.3 NA NA chrX 70679448 GCGxTGG G T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 96 0 0 40.198027 0.421053 0.02 -0.333219 22 16 620 438 60 60 0 0 GG 13.233924 44 0 1213 0 KEEP - Trex2 NO AA_3 chrX 71816045 71816045 A T intergenic "Gm6880(dist=89307),Olfr1325(dist=23622)" NA NA intergenic "Gm6880(dist=89307),Olfr1325(dist=23622)" NA NA exonic ENSMUSG00000043715 nonsynonymous SNV ENSMUST00000059880:c.T869A:p.M290K XqA7.3 NA NA chrX 71816045 ATCxTAG A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 38 0 0 41.334342 0.928571 0.02 -0.122769 1 13 26 367 60 60 0 0 AA 5.713967 19 0 512 0 KEEP NA Gm6880 YES AA_3 chrX 71972702 71972702 A T intergenic "Gm5640(dist=81728),Gm6890(dist=13564)" NA NA intergenic "Gm5640(dist=81728),Gm6890(dist=13564)" NA NA ncRNA_intronic ENSMUSG00000084066 NA NA XqA7.3 "Score=0.969769;Name=No.113432,chrX:72166798" NA chrX 71972702 AGTxGGC A T OtA1978_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 130 0 1 111.753943 0.972973 0.02 -0.324396 1 36 28 966 60 60 0 0 AA 24.93061 83 0 2221 0 KEEP NA Gm5640 YES AA_4 chr10 106482245 106482245 G A intronic Acss3 NA NA intronic Acss3 NA NA intronic ENSMUSG00000035948 NA NA 10qD1 NA NA chr10 106482245 TGCxCAT G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582877 0.58293 0.999909 60 0 0 15.265858 0.269231 0.02 -0.227849 19 7 473 185 60 60 0 0 GG 7.209454 24 0 582 0 KEEP - Acss3 NO AA_4 chr10 107000184 107000184 T A intronic Ptprq NA NA intronic Ptprq NA NA intronic ENSMUSG00000035916 NA NA 10qD1 NA NA chr10 107000184 GTGxGCT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 199 4 0 36.664505 0.271186 0.02 1.169269 43 16 1130 440 60 60 0 0 TT 30.657071 102 0 2723 0 KEEP - Ptprq YES AA_4 chr10 109157024 109157024 T A exonic Nav3 stopgain SNV NM_001081035:c.A5101T:p.K1701X exonic Nav3 stopgain SNV uc007gzk.1:c.A2881T:p.K961X exonic ENSMUSG00000020181 stopgain SNV ENSMUST00000161582:c.A2932T:p.K978X 10qD1 NA NA chr10 109157024 TCTxCTT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 91 0 0 21.046788 0.232558 0.02 -0.377025 33 10 906 264 60 60 0 0 TT 9.322011 31 0 857 0 KEEP - Nav3 YES AA_4 chr10 110737322 110737322 A G exonic Bbs10 synonymous SNV NM_027914:c.A1239G:p.G413G exonic Bbs10 synonymous SNV uc011xnf.1:c.A1239G:p.G413G exonic ENSMUSG00000035759 synonymous SNV ENSMUST00000040454:c.A1239G:p.G413G 10qD1 NA NA chr10 110737322 CGGxGCA A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 92 0 0 84.443981 0.674419 0.02 -0.377081 14 29 390 824 60 60 0 0 AA 12.010008 40 0 1089 0 KEEP + Bbs10 NO AA_4 chr10 127749989 127749989 C T exonic Pan2 nonsynonymous SNV NM_001252326:c.C1415T:p.T472M exonic Pan2 nonsynonymous SNV uc007hme.1:c.C1415T:p.T472M exonic ENSMUSG00000005682 nonsynonymous SNV ENSMUST00000005825:c.C1415T:p.T472M 10qD3 NA NA chr10 127749989 TCAxGGA C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.83568 0.835716 0.999957 71 0 0 27.001501 0.324324 0.02 -0.324342 25 12 657 314 60 60 0 0 CC 7.811972 26 0 648 0 KEEP + Pan2 NO AA_4 chr10 19776287 19776287 A G exonic Map3k5 nonsynonymous SNV NM_008580:c.A1394G:p.K465R exonic Map3k5 nonsynonymous SNV uc011xaz.1:c.A1370G:p.K457R exonic ENSMUSG00000071369 nonsynonymous SNV ENSMUST00000120259:c.A1370G:p.K457R 10qA3 NA NA chr10 19776287 TGAxGCT A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 43 0 0 32.252662 0.647059 0.02 -0.149083 6 11 166 318 60 60 0 0 AA 5.414158 18 0 501 0 KEEP + Map3k5 NO AA_4 chr10 20845997 20845997 A G exonic Myb synonymous SNV NM_010848:c.T1893C:p.A631A exonic Myb synonymous SNV uc007eog.1:c.T1893C:p.A631A exonic ENSMUSG00000019982 synonymous SNV ENSMUST00000020158:c.T1893C:p.A631A 10qA3 NA NA chr10 20845997 TCGxGCT A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 109 0 0 18.648759 0.228571 0.02 -0.306915 27 8 746 230 60 60 0 0 AA 19.176201 64 0 1710 0 KEEP - Myb NO AA_4 chr10 23733405 23733405 T A intergenic "Taar7b(dist=12584),Taar7d(dist=13623)" NA NA intergenic "Taar7b(dist=12584),Taar7d(dist=13623)" NA NA ncRNA_exonic ENSMUSG00000084182 NA NA 10qA4 "Score=0.953979;Name=No.5754,chr10:23712171" NA chr10 23733405 TCCxCAG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 240 0 0 181.71076 0.755814 0.02 0.817071 21 65 575 1715 60 60 0 0 TT 37.258551 124 0 3398 0 KEEP NA Taar7b YES AA_4 chr10 41005256 41005256 T A intronic Fig4 NA NA intronic Fig4 NA NA intronic ENSMUSG00000038417 NA NA 10qB1 NA NA chr10 41005256 CCCxGGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717285 0.717315 0.999957 60 1 0 58.748587 0.7 0.02 -0.271796 9 21 246 567 60 60 0 0 TT 7.820036 26 0 716 0 KEEP - Fig4 YES AA_4 chr10 51335505 51335505 A T exonic Gprc6a synonymous SNV NM_153071:c.T1953A:p.I651I exonic Gprc6a synonymous SNV uc007faw.1:c.T1740A:p.I580I exonic ENSMUSG00000019905 synonymous SNV ENSMUST00000105478:c.T1740A:p.I580I 10qB3 NA NA chr10 51335505 TCCxATA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 67 0 0 16.534599 0.333333 0.02 -0.184134 14 7 383 190 60 60 0 0 AA 10.526116 35 0 958 0 KEEP - Gprc6a YES AA_4 chr10 58639766 58639766 T A splicing "Sept10(NM_001024910:exon8:c.779-2A>T,NM_001024911:exon8:c.779-2A>T)" NA NA splicing "Sept10(uc007fdm.1:exon8:c.779-2A>T,uc007fdn.2:exon8:c.779-2A>T)" NA NA splicing "ENSMUSG00000019917(ENSMUST00000089092:exon8:c.776-2A>T,ENSMUST00000165971:exon8:c.779-2A>T,ENSMUST00000020074:exon8:c.776-2A>T)" NA NA 10qB4 NA NA chr10 58639766 CACxAGC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 120 0 0 97.940518 0.660377 0.02 1.23055 18 35 462 960 60 60 0 0 TT 17.141489 57 0 1538 0 KEEP - Sept10 YES AA_4 chr10 6338700 6338700 C T exonic Mthfd1l nonsynonymous SNV NM_001170785:c.G877A:p.D293N exonic Mthfd1l nonsynonymous SNV uc007ehj.2:c.G877A:p.D293N exonic ENSMUSG00000040675 nonsynonymous SNV ENSMUST00000043735:c.G877A:p.D293N 10qA1 NA NA chr10 6338700 AGTxATG C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 116 2 0 39.152121 0.535714 0.02 -0.245525 13 15 378 404 60 60 0 0 CC 19.546218 65 0 1846 0 KEEP - Mthfd1l NO AA_4 chr10 74788891 74788891 T G exonic Adora2a nonsynonymous SNV NM_009630:c.T118G:p.F40V exonic Adora2a nonsynonymous SNV uc007fqh.1:c.T118G:p.F40V exonic ENSMUSG00000020178 nonsynonymous SNV ENSMUST00000105420:c.T118G:p.F40V 10qC1 NA NA chr10 74788891 AACxTCT T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 196 0 0 64.860739 0.408451 0.02 1.072886 42 29 1163 719 60 60 0 0 TT 27.072014 90 0 2527 0 KEEP + Adora2a NO AA_4 chr10 85401849 85401849 T A exonic D10Wsu52e stopgain SNV NM_145422:c.A1426T:p.K476X exonic D10Wsu52e stopgain SNV uc007gni.1:c.A1426T:p.K476X exonic ENSMUSG00000001783 stopgain SNV ENSMUST00000001834:c.A1426T:p.K476X 10qC1 NA NA chr10 85401849 TCTxATA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 123 0 0 58.253356 0.511628 0.02 -0.377015 21 22 554 607 60 60 0 0 TT 18.934582 63 0 1687 0 KEEP - D10Wsu52e YES AA_4 chr10 87041666 87041666 T A exonic Pah synonymous SNV NM_008777:c.T1134A:p.T378T exonic Pah synonymous SNV uc007gqt.2:c.T1134A:p.T378T exonic ENSMUSG00000020051 synonymous SNV ENSMUST00000020241:c.T1134A:p.T378T 10qC1 NA NA chr10 87041666 TACxGTC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 75 0 0 25.686066 0.454545 0.02 -0.192907 12 10 330 275 60 60 0 0 TT 12.627435 42 0 1156 0 KEEP + Pah YES AA_4 chr11 102260468 102260468 A T intronic Rundc3a NA NA intronic Rundc3a NA NA intronic ENSMUSG00000006575 NA NA 11qD NA NA chr11 102260468 TGGxGGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668451 0.668523 0.999892 57 0 0 89.003043 1 0.02 -0.254216 0 29 0 752 0 60 0 0 AA 6.916695 23 0 625 0 KEEP + Rundc3a YES AA_4 chr11 104520227 104520227 C G exonic Itgb3 nonsynonymous SNV NM_016780:c.C1878G:p.C626W exonic Itgb3 nonsynonymous SNV uc007lwx.2:c.C945G:p.C315W exonic ENSMUSG00000020689 nonsynonymous SNV ENSMUST00000021028:c.C1878G:p.C626W 11qE1 NA NA chr11 104520227 GTGxCCC C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 212 0 0 7.967486 0.056818 0.02 1.021864 83 5 2344 139 60 60 0 0 CC 29.392614 98 0 2677 0 KEEP + Itgb3 NO AA_4 chr11 106640483 106640483 T A exonic Polg2 nonsynonymous SNV NM_015810:c.A274T:p.M92L exonic Polg2 nonsynonymous SNV uc007lzm.2:c.A274T:p.M92L exonic ENSMUSG00000020718 nonsynonymous SNV ENSMUST00000021060:c.A274T:p.M92L 11qE1 NA NA chr11 106640483 CCAxAGA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 192 0 0 221.223543 0.985714 0.02 1.081416 1 69 25 1906 60 60 0 0 TT 27.318696 91 0 2343 0 KEEP - Polg2 YES AA_4 chr11 110886376 110886376 C T exonic Kcnj16 synonymous SNV NM_001252208:c.C549T:p.R183R exonic Kcnj16 synonymous SNV uc007mdu.1:c.C549T:p.R183R exonic ENSMUSG00000051497 synonymous SNV ENSMUST00000106635:c.C549T:p.R183R 11qE2 NA NA chr11 110886376 ACGxTTC C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 71 0 0 22.195761 0.27027 0.02 -0.324457 27 10 769 268 60 60 0 0 CC 9.324677 31 0 869 0 KEEP + Kcnj16 NO AA_4 chr11 115044969 115044969 T A exonic Nat9 nonsynonymous SNV NM_025400:c.A361T:p.T121S exonic Nat9 nonsynonymous SNV uc007mgr.1:c.A361T:p.T121S exonic ENSMUSG00000015542 nonsynonymous SNV ENSMUST00000103038:c.A361T:p.T121S 11qE2 NA NA chr11 115044969 CAGxGCC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 61 0 0 65.227873 1 0.02 -0.175379 0 20 0 557 0 60 0 0 TT 9.62441 32 0 877 0 KEEP - Nat9 YES AA_4 chr11 115114088 115114088 G C intronic Grin2c NA NA intronic Grin2c NA NA intronic ENSMUSG00000020734 NA NA 11qE2 NA NA chr11 115114088 CTAxAGA G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693638 0.693668 0.999957 63 0 0 95.421211 0.966667 0.02 -0.26309 1 29 28 835 60 60 0 0 GG 7.821825 26 0 750 0 KEEP - Grin2c NO AA_4 chr11 117152150 117152150 A C exonic Sept9 nonsynonymous SNV NM_001113487:c.A494C:p.K165T exonic Sept9 nonsynonymous SNV uc007mne.2:c.A494C:p.K165T exonic ENSMUSG00000059248 nonsynonymous SNV ENSMUST00000019038:c.A494C:p.K165T 11qE2 NA NA chr11 117152150 CCAxGAT A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 84 0 0 124.866559 1 0.02 -0.385183 0 44 0 1040 0 60 0 1 AA 8.422453 28 0 786 0 KEEP + Sept9 NO AA_4 chr11 120000315 120000315 G A exonic Slc38a10 synonymous SNV NM_001164798:c.C486T:p.T162T exonic Slc38a10 synonymous SNV uc007mrv.2:c.C486T:p.T162T exonic ENSMUSG00000061306 synonymous SNV ENSMUST00000045402:c.C486T:p.T162T 11qE2 NA NA chr11 120000315 GACxGTG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.421991 0.423478 0.99649 37 0 0 67.402254 1 0.02 -0.184135 0 21 0 574 0 60 0 0 GG 4.506566 15 0 370 0 KEEP - Slc38a10 NO AA_4 chr11 121310352 121310352 T A intronic Fn3k NA NA intronic Fn3k NA NA intronic ENSMUSG00000025175 NA NA 11qE2 NA NA chr11 121310352 GGCxGTC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 62 0 0 61.751203 1 0.02 -0.166609 0 19 0 527 0 60 0 0 TT 10.226093 34 0 934 0 KEEP + Fn3k YES AA_4 chr11 50079266 50079266 T A exonic Maml1 nonsynonymous SNV NM_175334:c.A1583T:p.Y528F exonic Maml1 nonsynonymous SNV uc007isd.2:c.A1583T:p.Y528F exonic ENSMUSG00000050567 nonsynonymous SNV ENSMUST00000059458:c.A1583T:p.Y528F 11qB1.3 NA NA chr11 50079266 TTGxAAT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 113 0 0 133.940848 0.955556 0.02 -0.394552 2 43 52 1170 60 60 0 0 TT 18.341785 61 0 1619 0 KEEP - Maml1 YES AA_4 chr11 50755961 50755961 A G intergenic "Zfp354b(dist=10824),Prop1(dist=8347)" NA NA ncRNA_exonic AK016813 NA NA exonic ENSMUSG00000072983 synonymous SNV ENSMUST00000109123:c.T315C:p.P105P 11qB1.3 NA NA chr11 50755961 AGGxGGT A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 111 0 0 66.527876 0.55814 0.02 -0.37707 19 24 522 679 60 60 0 0 AA 14.664159 49 0 1291 0 KEEP NA Zfp354b NO AA_4 chr11 69694273 69694273 G T UTR5 Kctd11 NA NA UTR5 Kctd11 NA NA UTR5 ENSMUSG00000046731 NA NA 11qB3 NA NA chr11 69694273 AGGxTTA G T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999997 75 0 0 128.120913 1 0.02 -0.359451 0 41 0 1086 0 60 0 0 GG 9.624565 32 0 884 0 KEEP - Kctd11 NO AA_4 chr11 78022670 78022670 T A exonic Supt6 nonsynonymous SNV NM_009297:c.A4573T:p.S1525C exonic Supt6h nonsynonymous SNV uc007kio.2:c.A1369T:p.S457C exonic ENSMUSG00000002052 nonsynonymous SNV ENSMUST00000002121:c.A4573T:p.S1525C 11qB5 NA NA chr11 78022670 TACxGGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 133 2 0 171.947027 1 0.02 1.230482 0 53 0 1467 0 60 0 0 TT 18.346006 61 0 1673 0 KEEP - Supt6 YES AA_4 chr11 85179085 85179085 A T exonic Bcas3 nonsynonymous SNV NM_001166643:c.A170T:p.K57M exonic Bcas3 nonsynonymous SNV uc007kro.2:c.A158T:p.K53M exonic ENSMUSG00000059439 nonsynonymous SNV ENSMUST00000092821:c.A170T:p.K57M 11qC NA NA chr11 85179085 AAAxGGA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760818 0.760887 0.999909 71 0 0 91.268661 0.939394 0.02 -0.289153 2 31 55 798 60 60 0 0 AA 7.219622 24 0 681 0 KEEP + Bcas3 YES AA_4 chr12 10388238 10388238 A T exonic Nt5c1b nonsynonymous SNV NM_027588:c.A1334T:p.H445L exonic Nt5c1b nonsynonymous SNV uc007nap.2:c.A1334T:p.H445L exonic ENSMUSG00000020622 nonsynonymous SNV ENSMUST00000002456:c.A1334T:p.H445L 12qA1.1 NA NA chr12 10388238 ATCxTGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 109 0 0 84.018574 0.625 0.02 -0.420838 18 30 463 835 60 60 0 0 AA 15.937835 53 0 1417 0 KEEP + Nt5c1b YES AA_4 chr12 105189020 105189020 A C exonic Serpina1e nonsynonymous SNV NM_009247:c.T599G:p.F200C exonic Serpina1e nonsynonymous SNV uc007owl.1:c.T599G:p.F200C exonic ENSMUSG00000072849 nonsynonymous SNV ENSMUST00000085054:c.T599G:p.F200C 12qE "Score=0.956227;Name=No.26212,chr12:105085193" NA chr12 105189020 ACGxAAA A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999998 105 0 1 121.555877 0.719298 0.02 1.482504 16 41 434 1167 60 60 0 0 AA 10.524208 35 0 955 0 KEEP - Serpina1e NO AA_4 chr12 106020203 106020203 A T exonic Clmn nonsynonymous SNV NM_001040682:c.T1294A:p.L432M exonic Clmn nonsynonymous SNV uc007oxl.1:c.T1294A:p.L432M exonic ENSMUSG00000021097 nonsynonymous SNV ENSMUST00000077761:c.T1294A:p.L432M 12qE NA NA chr12 106020203 GCAxGTC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 96 0 0 15.363674 0.269231 0.02 -0.227978 19 7 527 186 60 60 0 0 AA 18.012894 60 0 1650 0 KEEP - Clmn YES AA_4 chr12 120415528 120415528 A T exonic Itgb8 synonymous SNV NM_177290:c.T1086A:p.I362I exonic Itgb8 synonymous SNV uc007pik.1:c.T1086A:p.I362I exonic ENSMUSG00000025321 synonymous SNV ENSMUST00000026360:c.T1086A:p.I362I 12qF2 NA NA chr12 120415528 AGCxATG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 91 0 0 54.419252 0.791667 0.02 -0.210422 5 19 138 507 60 60 0 0 AA 14.436245 48 0 1323 0 KEEP - Itgb8 YES AA_4 chr12 18070596 18070596 A T intergenic "Hpcal1(dist=271864),5730507C01Rik(dist=450720)" NA NA ncRNA_exonic EG245297 NA NA intergenic "ENSMUSG00000091687(dist=70322),ENSMUSG00000073198(dist=152808)" NA NA 12qA1.2 "Score=0.97274;Name=No.18195,chr12:18683474" NA chr12 18070596 AACxGAC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 172 3 9 13.402951 0.25 0.02 -0.219218 18 6 500 164 60 60 0 0 AA 31.58383 105 0 2945 0 KEEP NA Hpcal1 YES AA_4 chr12 30788772 30788772 T C exonic Tpo nonsynonymous SNV NM_009417:c.A798G:p.I266M exonic Tpo nonsynonymous SNV uc007ngo.1:c.A798G:p.I266M exonic ENSMUSG00000020673 nonsynonymous SNV ENSMUST00000021005:c.A798G:p.I266M 12qA2 NA NA chr12 30788772 CTGxATG T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 206 0 0 134.591253 0.661972 0.02 1.269656 24 47 617 1319 60 60 0 0 TT 31.871644 106 0 2826 0 KEEP - Tpo NO AA_4 chr12 71299521 71299521 A C exonic Pygl nonsynonymous SNV NM_133198:c.T1414G:p.F472V exonic Pygl nonsynonymous SNV uc007ntm.2:c.T1414G:p.F472V exonic ENSMUSG00000021069 nonsynonymous SNV ENSMUST00000071250:c.T1414G:p.F472V 12qC2 NA NA chr12 71299521 TGAxGTC A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 90 0 0 13.882715 0.241379 0.02 -0.254176 22 7 599 175 60 60 0 0 AA 14.738824 49 0 1371 0 KEEP - Pygl NO AA_4 chr12 73048047 73048047 A T exonic Daam1 synonymous SNV NM_026102:c.A1236T:p.I412I exonic Daam1 synonymous SNV uc007nuw.1:c.A1236T:p.I412I exonic ENSMUSG00000034574 synonymous SNV ENSMUST00000045448:c.A1236T:p.I412I 12qC3 NA NA chr12 73048047 GATxGTT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999999 69 0 0 45.495739 0.666667 0.02 -0.210434 8 16 209 445 60 60 0 0 AA 10.517485 35 0 927 0 KEEP + Daam1 YES AA_4 chr12 77704790 77704790 A T intronic Sptb NA NA intronic Spnb1 NA NA intronic ENSMUSG00000021061 NA NA 12qC3 NA NA chr12 77704790 GGCxGGC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490485 0.490544 0.999879 49 0 0 7.996503 0.173913 0.02 -0.201676 19 4 525 107 60 60 0 0 AA 6.596797 22 0 589 0 KEEP - Sptb YES AA_4 chr12 87702499 87702499 T A intronic Esrrb NA NA intronic Esrrb NA NA intronic ENSMUSG00000021255 NA NA 12qD2 NA NA chr12 87702499 AGCxAAC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 279 4 0 59.543417 0.288889 0.02 0.907768 64 26 1651 706 60 60 0 0 TT 42.070377 140 0 3761 0 KEEP + Esrrb YES AA_4 chr12 88293889 88293889 A G intronic 2310044G17Rik NA NA intronic "2310044G17Rik,Kiaa1737" NA NA intronic ENSMUSG00000034157 NA NA 12qD2 NA NA chr12 88293889 ACCxTAG A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 78 0 0 14.504255 0.25 0.02 -0.245452 21 7 550 180 60 60 0 0 AA 12.028862 40 0 1074 0 KEEP + 2310044G17Rik NO AA_4 chr12 88459063 88459063 A G intronic Pomt2 NA NA intronic Pomt2 NA NA intronic ENSMUSG00000034126 NA NA 12qD2 NA NA chr12 88459063 AACxTTA A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 106 0 0 51.24033 0.456522 0.02 -0.412015 25 21 659 550 60 60 0 0 AA 13.821858 46 0 1226 0 KEEP - Pomt2 NO AA_4 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 292 6 91 15.475357 0.09 0.02 2.202885 91 9 2619 243 55 29 0 0 CC 42.407478 141 0 3985 0 KEEP NA Gm2042 NO AA_4 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 366 6 91 32.980625 0.155738 0.02 1.912971 103 19 2738 468 60 60 0 0 TT 52.605102 175 0 4658 0 KEEP NA Gm2042 NO AA_4 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 329 6 39 43.263077 0.175439 0.02 2.373334 94 20 2546 567 60 60 0 0 TT 54.737132 182 0 4974 0 KEEP NA Gm2042 NO AA_4 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 110 2 1 45.638031 0.365385 0.02 1.13261 33 19 920 514 60 60 0 0 CC 13.23384 44 0 1211 0 KEEP NA Gm2042 NO AA_4 chr12 91050431 91050431 A T intronic Nrxn3 NA NA intronic Nrxn3 NA NA intronic ENSMUSG00000066392 NA NA 12qD3 NA NA chr12 91050431 GCGxGAA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 153 0 0 53.913728 0.365079 0.02 1.142832 40 23 1105 609 60 60 0 0 AA 21.02658 70 0 1907 0 KEEP + Nrxn3 YES AA_4 chr12 99756907 99756907 A T exonic Kcnk10 nonsynonymous SNV NM_029911:c.T179A:p.L60Q exonic Kcnk10 nonsynonymous SNV uc007oqg.1:c.T188A:p.L63Q exonic ENSMUSG00000033854 nonsynonymous SNV ENSMUST00000085120:c.T188A:p.L63Q 12qE NA NA chr12 99756907 TGCxGGC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 121 0 0 47.734049 0.338983 0.02 1.169125 39 20 1065 546 60 60 0 0 AA 14.137088 47 0 1310 0 KEEP - Kcnk10 YES AA_4 chr13 18934062 18934062 A T exonic Vps41 nonsynonymous SNV NM_172120:c.A1460T:p.Y487F exonic Vps41 nonsynonymous SNV uc007pok.2:c.A1460T:p.Y487F exonic ENSMUSG00000041236 nonsynonymous SNV ENSMUST00000072961:c.A1460T:p.Y487F 13qA2 NA NA chr13 18934062 TATxTAA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 54 0 0 11.631661 0.263158 0.02 -0.166569 14 5 361 140 60 60 0 0 AA 9.020791 30 0 797 0 KEEP + Vps41 YES AA_4 chr13 23843225 23843225 A T exonic Hist1h2ab nonsynonymous SNV NM_175660:c.A224T:p.K75M exonic Hist1h2ab nonsynonymous SNV uc007put.1:c.A224T:p.K75M exonic ENSMUSG00000061615 nonsynonymous SNV ENSMUST00000078369:c.A224T:p.K75M 13qA3.1 NA NA chr13 23843225 ACAxGAA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.734547 0.739671 0.993072 131 0 65 55.262374 0.65625 0.02 -0.280534 11 21 299 542 29 36 0 0 AA 15.596961 52 0 1411 0 KEEP + Hist1h2ab YES AA_4 chr13 25082307 25082307 A G UTR3 Gpld1 NA NA ncRNA_exonic AK020095 NA NA UTR3 ENSMUSG00000021340 NA NA 13qA3.1 NA NA chr13 25082307 AAAxAAT A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 121 0 0 29.63401 0.315789 0.02 -0.333218 26 12 717 342 60 60 0 0 AA 20.754775 69 0 1929 0 KEEP + Gpld1 NO AA_4 chr13 41143523 41143523 T A exonic Mak nonsynonymous SNV NM_001145802:c.A637T:p.I213F exonic Mak nonsynonymous SNV uc007qev.2:c.A730T:p.I244F exonic ENSMUSG00000021363 nonsynonymous SNV ENSMUST00000021792:c.A730T:p.I244F 13qA3.3 NA NA chr13 41143523 TGAxGGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.259304 0.260965 0.993634 31 0 0 12.274095 0.3125 0.02 -0.140131 11 5 274 142 60 60 0 0 TT 3.596906 12 0 309 0 KEEP - Mak YES AA_4 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 177 0 3 30.810446 0.909091 0.02 -0.13153 1 10 28 275 37 29 0 0 CC 38.806443 129 0 3718 0 KEEP + BC052688 NO AA_4 chr13 62108438 62108438 G C intergenic "BC052688(dist=219796),Zfp808(dist=122812)" NA NA intergenic "AK006455(dist=180554),A130040M12Rik(dist=76069)" NA NA intergenic "ENSMUSG00000080451(dist=183414),ENSMUSG00000092904(dist=1389)" NA NA 13qB3 "Score=0.960103;Name=No.33008,chr13:61865990" NA chr13 62108438 ACAxATG G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 50 0 2 9.16364 0.2 0.02 -0.175393 16 4 456 116 60 36 0 0 GG 7.219695 24 0 687 0 KEEP NA BC052688 NO AA_4 chr13 63646329 63646329 T A intronic Ptch1 NA NA intronic Ptch1 NA NA intronic ENSMUSG00000021466 NA NA 13qB3 NA NA chr13 63646329 CACxGAG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 105 0 0 75.814809 0.692308 0.02 -0.341966 12 27 334 734 60 60 0 0 TT 15.338474 51 0 1408 0 KEEP - Ptch1 YES AA_4 chr13 65442490 65442490 A G intergenic "Zfp369(dist=43387),Gm10324(dist=771899)" NA NA intergenic "Zfp369(dist=43387),AK145544(dist=57800)" NA NA intergenic "ENSMUSG00000021514(dist=36961),ENSMUSG00000090514(dist=38211)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442490 ACCxTGT A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 151 7 19 7.570235 0.222222 0.02 -0.227915 14 4 371 98 60 20 0 0 AA 30.674498 102 0 2747 0 KEEP NA Zfp369 NO AA_4 chr13 65442544 65442544 C A intergenic "Zfp369(dist=43441),Gm10324(dist=771845)" NA NA intergenic "Zfp369(dist=43441),AK145544(dist=57746)" NA NA intergenic "ENSMUSG00000021514(dist=37015),ENSMUSG00000090514(dist=38157)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442544 AACxTTT C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 96 5 30 9.721521 0.444444 0.02 -0.08769 5 4 148 105 29 20 0 0 CC 20.154559 67 0 1920 0 KEEP NA Zfp369 NO AA_4 chr13 66970592 66970592 T A intergenic "2410141K09Rik(dist=428538),Uqcrb(dist=30965)" NA NA intergenic "AK049212(dist=116673),Uqcrb(dist=30965)" NA NA intergenic "ENSMUSG00000071294(dist=4581),ENSMUSG00000071292(dist=4398)" NA NA 13qB3 "Score=0.980557;Name=No.34397,chr13:66750246" NA chr13 66970592 AGAxGGA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 237 1 78 23.312909 0.192982 0.02 1.053793 46 11 1212 302 36 29 0 0 TT 36.65763 122 0 3236 0 KEEP NA 2410141K09Rik YES AA_4 chr13 89844469 89844469 T C exonic Vcan nonsynonymous SNV NM_001081249:c.A1976G:p.Y659C exonic Vcan nonsynonymous SNV uc007rjg.1:c.A1976G:p.Y659C exonic ENSMUSG00000021614 nonsynonymous SNV ENSMUST00000022114:c.A1976G:p.Y659C 13qC3 NA NA chr13 89844469 GAAxATG T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 85 0 0 54.666723 0.5 0.02 -0.367668 21 21 526 573 60 60 0 0 TT 10.524841 35 0 933 0 KEEP - Vcan NO AA_4 chr14 14932748 14932748 C T exonic Atxn7 nonsynonymous SNV NM_139227:c.C1919T:p.S640F exonic Atxn7 nonsynonymous SNV uc007sgi.2:c.C1919T:p.S640F exonic ENSMUSG00000021738 nonsynonymous SNV ENSMUST00000022257:c.C1919T:p.S640F 14qA1 NA NA chr14 14932748 CTTxCGT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 301 3 0 83.390339 0.346535 0.02 2.309041 66 35 1887 950 60 60 0 0 CC 43.857262 146 0 4052 0 KEEP + Atxn7 NO AA_4 chr14 21243669 21243669 T A exonic Ttc18 synonymous SNV NM_001163638:c.A1221T:p.G407G exonic Ttc18 synonymous SNV uc011zgq.1:c.A1221T:p.G407G exonic ENSMUSG00000039543 synonymous SNV ENSMUST00000022349:c.A1221T:p.G407G 14qA3 NA NA chr14 21243669 TGTxCCC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 89 0 0 35.474755 0.454545 0.02 -0.289311 18 15 493 382 60 60 0 0 TT 12.005082 40 0 1092 0 KEEP - Ttc18 YES AA_4 chr14 26280914 26280914 C T intronic Zmiz1 NA NA intronic Zmiz1 NA NA intronic ENSMUSG00000007817 NA NA 14qA3 NA NA chr14 26280914 GGAxACT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 308 0 0 127.226052 0.509615 0.02 2.185891 51 53 1432 1333 60 60 0 0 CC 46.072251 156 1 4264 7 KEEP + Zmiz1 NO AA_4 chr14 36623318 36623318 T A exonic 4930596D02Rik nonsynonymous SNV NM_001033766:c.A485T:p.K162M exonic 4930596D02Rik nonsynonymous SNV uc007tbk.1:c.A485T:p.K162M exonic ENSMUSG00000041068 nonsynonymous SNV ENSMUST00000043266:c.A485T:p.K162M 14qB NA NA chr14 36623318 GTCxTCA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 119 2 0 57.415577 0.5 0.02 -0.403319 23 23 640 603 60 60 0 0 TT 18.641972 62 0 1701 0 KEEP - 4930596D02Rik YES AA_4 chr14 52032928 52032928 C A exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C422A:p.A141D exonic "Vmn2r-ps160,Vmn2r88" nonsynonymous SNV uc009vao.1:c.C422A:p.A141D exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000022438:c.C422A:p.A141D 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032928 GTGxCAT C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 219 2 0 15.646054 0.103448 0.02 2.000367 78 9 2193 239 60 60 0 0 CC 28.874457 96 0 2654 0 KEEP + Vmn2r88 NO AA_4 chr14 52032935 52032935 T C exonic Vmn2r88 synonymous SNV NM_011686:c.T429C:p.G143G exonic "Vmn2r-ps160,Vmn2r88" synonymous SNV uc009vao.1:c.T429C:p.G143G exonic ENSMUSG00000000606 synonymous SNV ENSMUST00000022438:c.T429C:p.G143G 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032935 AGGxCTT T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 228 4 0 43.046905 0.218391 0.02 2.579078 68 19 1798 538 60 60 0 0 TT 30.046655 100 0 2713 0 KEEP + Vmn2r88 NO AA_4 chr14 52033554 52033554 A C exonic Vmn2r88 nonsynonymous SNV NM_011686:c.A673C:p.K225Q exonic "Vmn2r-ps160,Vmn2r88" nonsynonymous SNV uc009vao.1:c.A673C:p.K225Q exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000022438:c.A649C:p.K217Q 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52033554 GACxAGG A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 247 1 2 9.014711 0.074074 0.02 0.958724 75 6 2057 154 60 25 0 0 AA 37.786031 136 1 3714 29 KEEP + Vmn2r88 NO AA_4 chr14 52036477 52036477 C T exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C1640T:p.P547L exonic Vmn2r88 nonsynonymous SNV uc009vao.1:c.C1640T:p.P547L exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000159674:c.C1481T:p.P494L 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52036477 GCCxAGA C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 478 25 18 32.378115 0.149123 0.02 2.276768 97 17 2780 451 60 60 0 0 CC 86.019164 286 0 8140 0 KEEP + Vmn2r88 NO AA_4 chr14 52078475 52078475 G A intronic Vmn2r89 NA NA UTR5 Vmn2r121 NA NA intronic "ENSMUSG00000068399,ENSMUSG00000070448" NA NA 14qC1 "Score=0.917456;Name=No.56670,chrUn_random:2738547" NA chr14 52078475 GAGxTTT G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 639 76 26 15.369696 0.071429 0.02 1.898397 130 10 3603 262 60 60 0 0 GG 116.091924 386 0 10631 0 KEEP + Vmn2r89 NO AA_4 chr14 52833008 52833008 T A exonic Chd8 synonymous SNV NM_201637:c.A4296T:p.P1432P exonic Chd8 synonymous SNV uc007tou.1:c.A345T:p.P115P exonic ENSMUSG00000053754 synonymous SNV ENSMUST00000089752:c.A4296T:p.P1432P 14qC2 NA NA chr14 52833008 ACGxGGC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 132 0 0 79.077179 0.526316 0.02 1.195494 27 30 721 819 60 60 0 0 TT 17.440931 58 0 1550 0 KEEP - Chd8 YES AA_4 chr14 55567140 55567140 T C exonic Myh6 nonsynonymous SNV NM_001164171:c.A4514G:p.K1505R exonic Myh6 nonsynonymous SNV uc007txr.2:c.A4514G:p.K1505R exonic ENSMUSG00000040752 nonsynonymous SNV ENSMUST00000081857:c.A4514G:p.K1505R 14qC3 NA NA chr14 55567140 TTCxTGT T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 186 1 2 13.36085 0.102941 0.02 1.17097 61 7 1691 198 60 60 0 0 TT 25.266395 84 0 2351 0 KEEP - Myh6 NO AA_4 chr14 55575990 55575990 A C exonic Myh6 nonsynonymous SNV NM_001164171:c.T2158G:p.F720V exonic Myh6 nonsynonymous SNV uc007txr.2:c.T2158G:p.F720V exonic ENSMUSG00000040752 nonsynonymous SNV ENSMUST00000081857:c.T2158G:p.F720V 14qC3 NA NA chr14 55575990 GGAxGTC A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291961 0.292001 0.999863 41 0 4 22.413241 0.727273 0.02 -0.149049 3 8 82 214 36 36 0 0 AA 6.614835 22 0 595 0 KEEP - Myh6 NO AA_4 chr14 55593760 55593760 T C exonic Myh7 nonsynonymous SNV NM_080728:c.A4508G:p.K1503R exonic Myh7 nonsynonymous SNV uc007txv.1:c.A4508G:p.K1503R exonic ENSMUSG00000053093 nonsynonymous SNV ENSMUST00000102803:c.A4508G:p.K1503R 14qC3 NA NA chr14 55593760 TTCxTGT T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 72 2 0 23.229321 0.409091 0.02 -0.21046 13 9 361 254 60 70 0 0 TT 11.731317 39 0 1097 0 KEEP - Myh7 NO AA_4 chr14 55604572 55604572 A C exonic Myh7 nonsynonymous SNV NM_080728:c.T2152G:p.F718V exonic Myh7 nonsynonymous SNV uc007txw.1:c.T103G:p.F35V exonic ENSMUSG00000053093 nonsynonymous SNV ENSMUST00000102803:c.T2152G:p.F718V 14qC3 NA NA chr14 55604572 GGAxGTC A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 93 4 2 12.764681 0.233333 0.02 -0.271775 23 7 644 165 60 60 0 0 AA 14.733911 49 0 1346 0 KEEP - Myh7 NO AA_4 chr14 61623990 61623990 T A exonic Tnfrsf19 nonsynonymous SNV NM_001164155:c.A281T:p.D94V exonic Tnfrsf19 nonsynonymous SNV uc007ufi.2:c.A281T:p.D94V exonic ENSMUSG00000060548 nonsynonymous SNV ENSMUST00000077444:c.A281T:p.D94V 14qD1 NA NA chr14 61623990 CAGxCCG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 80 0 0 33.302614 0.464286 0.02 -0.245483 15 13 395 355 60 60 0 0 TT 11.728967 39 0 1062 0 KEEP - Tnfrsf19 YES AA_4 chr14 61623991 61623991 C A exonic Tnfrsf19 nonsynonymous SNV NM_001164155:c.G280T:p.D94Y exonic Tnfrsf19 nonsynonymous SNV uc007ufi.2:c.G280T:p.D94Y exonic ENSMUSG00000060548 nonsynonymous SNV ENSMUST00000077444:c.G280T:p.D94Y 14qD1 NA NA chr14 61623991 AGTxCGC C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 81 0 0 32.61701 0.464286 0.02 -0.245098 15 13 411 348 60 60 0 0 CC 12.032294 40 0 1133 0 KEEP - Tnfrsf19 NO AA_4 chr14 70966006 70966006 A T intronic Hr NA NA intronic Hr NA NA intronic ENSMUSG00000022096 NA NA 14qD2 NA NA chr14 70966006 AGCxAGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.999859 40 0 0 24.858447 0.526316 0.02 -0.184066 9 10 236 258 60 60 0 0 AA 5.413504 18 0 490 0 KEEP + Hr YES AA_4 chr14 7365204 7365204 T A intergenic "LOC100861615(dist=245480),Gm10406(dist=473425)" NA NA intergenic "Gm10408(dist=121112),Gm2897(dist=54954)" NA NA intronic "ENSMUSG00000056940,ENSMUSG00000090627" NA NA 14qA1 "Score=0.981875;Name=No.43838,chr14:3956019" NA chr14 7365204 TGCxGTG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 649 11 44 16.005581 0.1 0.02 0.906029 81 9 2251 244 38 36 0 0 TT 135.916399 452 0 12541 0 KEEP NA LOC100861615 YES AA_4 chr15 100619593 100619593 A T exonic Slc4a8 synonymous SNV NM_021530:c.A1002T:p.P334P exonic Slc4a8 synonymous SNV uc007xse.1:c.A1002T:p.P334P exonic ENSMUSG00000023032 synonymous SNV ENSMUST00000162049:c.A846T:p.P282P 15qF1 NA NA chr15 100619593 CCCxACG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 81 0 0 44.273244 0.439024 0.02 -0.359461 23 18 622 479 60 60 0 0 AA 9.323673 31 0 850 0 KEEP + Slc4a8 YES AA_4 chr15 10303673 10303673 A G intronic Agxt2 NA NA intronic Agxt2 NA NA intronic ENSMUSG00000089678 NA NA 15qA1 NA NA chr15 10303673 CAGxAAA A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 67 0 0 48.4037 0.545455 0.02 -0.289322 15 18 413 497 60 60 0 0 AA 9.02409 30 0 842 0 KEEP + Agxt2 NO AA_4 chr15 36091810 36091810 T A exonic Fbxo43 synonymous SNV NM_001081253:c.A1005T:p.S335S exonic Fbxo43 synonymous SNV uc007vmk.1:c.A1005T:p.S335S exonic ENSMUSG00000048230 synonymous SNV ENSMUST00000058643:c.A1005T:p.S335S 15qB3.1 NA NA chr15 36091810 CTCxGAC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 156 0 0 87.787455 0.472222 0.02 1.063884 38 34 1054 932 60 60 0 0 TT 19.24914 64 0 1773 0 KEEP - Fbxo43 YES AA_4 chr15 38937522 38937522 T G exonic Slc25a32 nonsynonymous SNV NM_172402:c.A161C:p.D54A exonic Slc25a32 nonsynonymous SNV uc007vob.2:c.A161C:p.D54A exonic ENSMUSG00000022299 nonsynonymous SNV ENSMUST00000022908:c.A161C:p.D54A 15qB3.1 NA NA chr15 38937522 CCAxCAC T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 82 2 0 7.912278 0.108108 0.02 -0.323955 33 4 853 115 60 60 0 0 TT 11.128174 37 0 1017 0 KEEP - Slc25a32 NO AA_4 chr15 48289028 48289028 A G intronic Csmd3 NA NA intronic Csmd3 NA NA intronic ENSMUSG00000022311 NA NA 15qB3.3 NA NA chr15 48289028 TTAxGTT A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 94 0 0 64.270404 0.534884 0.02 -0.377099 20 23 566 662 60 60 0 0 AA 9.92598 33 0 920 0 KEEP - Csmd3 NO AA_4 chr15 54719194 54719194 A T intronic Enpp2 NA NA intronic Enpp2 NA NA intronic ENSMUSG00000022425 NA NA 15qD1 NA NA chr15 54719194 AATxCAT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 108 0 0 53.105013 0.512821 0.02 -0.341936 19 20 494 553 60 60 0 0 AA 16.102781 57 1 1524 9 KEEP - Enpp2 YES AA_4 chr15 6723857 6723857 G A exonic Rictor synonymous SNV NM_030168:c.G1449A:p.K483K exonic Rictor synonymous SNV uc007vds.1:c.G993A:p.K331K exonic ENSMUSG00000050310 synonymous SNV ENSMUST00000061656:c.G1449A:p.K483K 15qA1 NA NA chr15 6723857 GAAxAAG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490475 0.490544 0.999859 51 2 0 11.157264 0.217391 0.02 -0.201707 18 5 521 140 60 60 0 0 GG 5.415053 18 0 519 0 KEEP + Rictor NO AA_4 chr15 71767743 71767743 G A exonic Col22a1 synonymous SNV NM_027174:c.C2029T:p.L677L exonic Col22a1 synonymous SNV uc007wbj.2:c.C2029T:p.L677L exonic ENSMUSG00000079022 synonymous SNV ENSMUST00000159410:c.C364T:p.L122L 15qD3 NA NA chr15 71767743 GTAxGCC G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800159 0.800245 0.999892 68 0 0 41.549751 0.457143 0.02 -0.306932 19 16 549 444 60 60 0 0 GG 6.919014 23 0 658 0 KEEP - Col22a1 NO AA_4 chr15 84159273 84159273 G T intronic Parvg NA NA intronic Parvg NA NA UTR3 ENSMUSG00000022439 NA NA 15qE2 NA NA chr15 84159273 TCAxCTG G T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.520328 0.522161 0.99649 43 0 0 23.587765 0.416667 0.02 -0.21044 14 10 402 259 60 60 0 0 GG 4.512263 15 0 428 0 KEEP + Parvg NO AA_4 chr15 88745980 88745980 T A exonic Ttll8 nonsynonymous SNV NM_172818:c.A1687T:p.S563C exonic Ttll8 nonsynonymous SNV uc007xes.2:c.A1093T:p.S365C exonic ENSMUSG00000022388 nonsynonymous SNV ENSMUST00000023023:c.A1534T:p.S512C 15qE3 NA NA chr15 88745980 AGCxGTT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 104 0 0 75.647838 0.627907 0.02 -0.385815 16 27 436 751 60 60 0 0 TT 14.436007 48 0 1317 0 KEEP - Ttll8 YES AA_4 chr15 89199786 89199786 G T intronic Ncaph2 NA NA intronic Ncaph2 NA NA intronic ENSMUSG00000008690 NA NA 15qE3 NA NA chr15 89199786 GAAxAGG G T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52183 0.522161 0.999366 46 0 0 32.706649 0.541667 0.02 -0.210422 11 13 311 337 60 60 0 0 GG 5.1142 17 0 489 0 KEEP + Ncaph2 NO AA_4 chr15 94112871 94112871 A T intronic Adamts20 NA NA intronic Adamts20 NA NA intronic ENSMUSG00000022449 NA NA 15qE3 NA NA chr15 94112871 CCTxAAA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 185 0 0 114.620633 0.473684 0.02 0.862343 50 45 1310 1217 60 60 0 1 AA 23.140299 77 0 2059 0 KEEP - Adamts20 YES AA_4 chr15 96840592 96840592 A T exonic Slc38a4 nonsynonymous SNV NM_027052:c.T612A:p.F204L exonic Slc38a4 nonsynonymous SNV uc007xko.1:c.T612A:p.F204L exonic ENSMUSG00000022464 nonsynonymous SNV ENSMUST00000023101:c.T612A:p.F204L 15qF1 NA NA chr15 96840592 CACxAAT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 99 0 0 36.469489 0.384615 0.02 -0.341952 24 15 654 406 60 60 0 0 AA 13.535288 45 0 1250 0 KEEP - Slc38a4 YES AA_4 chr16 23610199 23610199 T A exonic Rtp4 nonsynonymous SNV NM_023386:c.T125A:p.L42Q exonic Rtp4 nonsynonymous SNV uc007ytw.2:c.T125A:p.L42Q exonic ENSMUSG00000033355 nonsynonymous SNV ENSMUST00000038423:c.T125A:p.L42Q 16qB1 NA NA chr16 23610199 CCCxGGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668442 0.668523 0.999879 59 0 0 31.019607 0.428571 0.02 -0.254293 16 12 442 336 60 60 0 0 TT 6.613645 22 0 596 0 KEEP + Rtp4 YES AA_4 chr16 33803254 33803254 C G intronic Muc13 NA NA intronic Muc13 NA NA intronic ENSMUSG00000022824 NA NA 16qB3 NA NA chr16 33803254 GTGxCAA C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 50 0 0 28.731091 0.478261 0.02 -0.201691 12 11 341 304 60 60 0 0 CC 5.113587 17 0 477 0 KEEP + Muc13 NO AA_4 chr16 3592735 3592735 A C exonic Olfr161 nonsynonymous SNV NM_146860:c.A338C:p.N113T exonic Olfr161 nonsynonymous SNV uc007xyl.1:c.A338C:p.N113T exonic ENSMUSG00000051003 nonsynonymous SNV ENSMUST00000061541:c.A338C:p.N113T 16qA1 NA NA chr16 3592735 ACAxTTT A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 120 2 0 73.575058 0.5 0.02 1.302829 28 28 727 771 60 60 0 0 AA 15.336105 51 0 1368 0 KEEP + Olfr161 NO AA_4 chr16 43821464 43821464 G T exonic Drd3 nonsynonymous SNV NM_007877:c.G933T:p.L311F exonic Drd3 nonsynonymous SNV uc007zgi.1:c.G933T:p.L311F exonic ENSMUSG00000022705 nonsynonymous SNV ENSMUST00000023390:c.G933T:p.L311F 16qB4 NA NA chr16 43821464 CTTxAGG G T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 86 0 0 61.949467 0.585366 0.02 -0.368211 17 24 493 626 60 60 0 0 GG 10.527834 35 0 1002 0 KEEP + Drd3 NO AA_4 chr16 96585578 96585578 T A intronic Igsf5 NA NA intronic Igsf5 NA NA intronic ENSMUSG00000000159 NA NA 16qC4 NA NA chr16 96585578 CTCxTGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.999859 48 0 0 32.277057 0.481481 0.02 -0.23674 14 13 394 342 60 60 0 0 TT 5.414641 18 0 509 0 KEEP + Igsf5 YES AA_4 chr17 20913623 20913623 T A exonic Vmn1r228 nonsynonymous SNV NM_134192:c.A596T:p.H199L exonic Vmn1r228 nonsynonymous SNV uc008aqd.1:c.A596T:p.H199L exonic ENSMUSG00000060245 nonsynonymous SNV ENSMUST00000072410:c.A596T:p.H199L 17qA3.2 NA NA chr17 20913623 GAGxGAC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 56 0 0 57.723399 0.65625 0.02 -0.288752 11 21 297 567 60 60 0 0 TT 5.41357 18 0 490 0 KEEP - Vmn1r228 YES AA_4 chr17 23776774 23776774 T A exonic Mmp25 nonsynonymous SNV NM_001033339:c.A769T:p.I257F exonic Mmp25 nonsynonymous SNV uc008asq.1:c.A769T:p.I257F exonic ENSMUSG00000023903 nonsynonymous SNV ENSMUST00000024696:c.A769T:p.I257F 17qA3.3 NA NA chr17 23776774 AGAxAGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 92 0 0 60.278117 0.469388 0.02 -0.429223 26 23 633 640 60 60 0 0 TT 11.417504 38 0 987 0 KEEP - Mmp25 YES AA_4 chr17 24644159 24644159 T A exonic Caskin1 stoploss SNV NM_027937:c.T4294A:p.X1432R exonic Caskin1 stoploss SNV uc008awo.1:c.T4081A:p.X1361R exonic ENSMUSG00000033597 stoploss SNV ENSMUST00000115347:c.T4081A:p.X1361R 17qA3.3 NA NA chr17 24644159 GAGxGAG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 142 3 0 47.815467 0.344828 0.02 1.1973 38 20 1025 545 60 60 0 0 TT 16.841197 56 0 1511 0 KEEP + Caskin1 YES AA_4 chr17 24644162 24644162 G C UTR3 Caskin1 NA NA ncRNA_exonic mKIAA1306 NA NA UTR3 ENSMUSG00000033597 NA NA 17qA3.3 NA NA chr17 24644162 TGAxGCA G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 142 1 0 50.400408 0.350877 0.02 1.295849 37 20 1053 569 60 60 0 0 GG 17.144592 57 0 1584 0 KEEP + Caskin1 NO AA_4 chr17 24644163 24644163 G A UTR3 Caskin1 NA NA ncRNA_exonic mKIAA1306 NA NA UTR3 ENSMUSG00000033597 NA NA 17qA3.3 NA NA chr17 24644163 GAGxCAG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 143 1 0 53.621647 0.383333 0.02 0.992373 37 23 1036 600 60 60 0 0 GG 17.142249 57 0 1551 0 KEEP + Caskin1 NO AA_4 chr17 24651762 24651762 T A exonic Traf7 nonsynonymous SNV NM_001172113:c.A241T:p.T81S exonic Traf7 nonsynonymous SNV uc008awq.2:c.A160T:p.T54S exonic ENSMUSG00000052752 nonsynonymous SNV ENSMUST00000163633:c.A16T:p.T6S 17qA3.3 NA NA chr17 24651762 GAGxGTT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 177 0 0 87.537106 0.459459 0.02 1.14518 40 34 1037 935 60 60 0 0 TT 24.442524 84 1 2228 7 KEEP - Traf7 YES AA_4 chr17 25888203 25888203 G A exonic Msln nonsynonymous SNV NM_018857:c.C796T:p.P266S exonic Msln nonsynonymous SNV uc008bbo.1:c.C796T:p.P266S exonic ENSMUSG00000063011 nonsynonymous SNV ENSMUST00000075884:c.C796T:p.P266S 17qA3.3 NA NA chr17 25888203 TGGxGAT G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 272 0 0 184.269078 0.507353 0.02 2.189063 67 69 1899 1923 60 60 0 0 GG 34.846573 116 0 3223 0 KEEP - Msln NO AA_4 chr17 27851845 27851845 G A exonic Spdef nonsynonymous SNV NM_013891:c.C946T:p.R316C exonic Spdef nonsynonymous SNV uc008bpo.2:c.C946T:p.R316C exonic ENSMUSG00000024215 nonsynonymous SNV ENSMUST00000025054:c.C946T:p.R316C 17qA3.3 NA NA chr17 27851845 GGCxCTG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 183 0 0 90.282418 0.425287 0.02 0.834667 50 37 1330 984 60 60 0 0 GG 18.935715 63 0 1624 0 KEEP - Spdef NO AA_4 chr17 29979855 29979855 T A exonic Mdga1 nonsynonymous SNV NM_001081160:c.A1544T:p.Q515L exonic Mdga1 nonsynonymous SNV uc008bto.1:c.A1544T:p.Q515L exonic ENSMUSG00000043557 nonsynonymous SNV ENSMUST00000073556:c.A1544T:p.Q515L 17qA3.3 NA NA chr17 29979855 GTCxGGC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 85 2 0 47.55287 0.514286 0.02 -0.306903 17 18 472 495 60 60 0 0 TT 11.428852 38 0 1041 0 KEEP - Mdga1 YES AA_4 chr17 31395738 31395738 A C exonic Rsph1 nonsynonymous SNV NM_025290:c.T728G:p.L243R exonic Rsph1 nonsynonymous SNV uc008buv.1:c.T614G:p.L205R exonic ENSMUSG00000024033 nonsynonymous SNV ENSMUST00000097354:c.T614G:p.L205R 17qA3.3 NA NA chr17 31395738 GTAxGTC A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 88 1 0 39.778186 0.418605 0.02 -0.376931 25 18 703 439 60 60 0 0 AA 10.52451 35 0 952 0 KEEP - Rsph1 NO AA_4 chr17 32150315 32150315 A T exonic Hsf2bp nonsynonymous SNV NM_028902:c.T401A:p.L134H exonic Hsf2bp nonsynonymous SNV uc008bvs.2:c.T401A:p.L134H exonic ENSMUSG00000002076 nonsynonymous SNV ENSMUST00000002145:c.T401A:p.L134H 17qB1 NA NA chr17 32150315 AGGxGGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.69366 0.693668 0.999988 66 0 0 40.925423 0.533333 0.02 -0.263022 14 16 381 423 60 60 0 0 AA 8.120877 27 0 746 0 KEEP - Hsf2bp YES AA_4 chr17 32284797 32284797 G A exonic Notch3 nonsynonymous SNV NM_008716:c.C2708T:p.T903I exonic Notch3 nonsynonymous SNV uc008bvx.1:c.C2708T:p.T903I exonic ENSMUSG00000038146 nonsynonymous SNV ENSMUST00000087723:c.C2708T:p.T903I 17qB1 NA NA chr17 32284797 TCAxTAC G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 160 0 0 84.510398 0.435897 0.02 1.01127 44 34 1248 915 60 60 0 0 GG 18.951109 63 0 1789 0 KEEP - Notch3 NO AA_4 chr17 33043180 33043180 C A intronic Cyp4f14 NA NA intronic Cyp4f14 NA NA intronic ENSMUSG00000024292 NA NA 17qB1 NA NA chr17 33043180 GCCxCAC C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 306 0 0 227.60022 0.576159 0.02 3.450975 64 87 1755 2308 60 60 0 0 CC 38.499011 128 0 3546 0 KEEP - Cyp4f14 NO AA_4 chr17 35340702 35340702 A C exonic Lta nonsynonymous SNV NM_010735:c.T589G:p.F197V exonic Lta nonsynonymous SNV uc008cgu.2:c.T589G:p.F197V exonic ENSMUSG00000024402 nonsynonymous SNV ENSMUST00000025266:c.T589G:p.F197V 17qB1 NA NA chr17 35340702 CAAxGAA A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835601 0.835716 0.999863 63 2 0 33.428529 0.388889 0.02 -0.324432 22 14 617 372 60 60 0 0 AA 6.014463 20 0 553 0 KEEP - Lta NO AA_4 chr17 37362481 37362481 T A exonic Olfr96 nonsynonymous SNV NM_146514:c.T410A:p.M137K exonic Olfr96 nonsynonymous SNV uc008cml.1:c.T410A:p.M137K exonic ENSMUSG00000064121 nonsynonymous SNV ENSMUST00000078209:c.T410A:p.M137K 17qB1 NA NA chr17 37362481 TCAxGGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 126 0 0 72.871919 0.529412 0.02 1.230668 24 27 620 753 60 60 0 0 TT 17.442611 58 0 1565 0 KEEP + Olfr96 YES AA_4 chr17 56714289 56714289 T A intronic Safb2 NA NA intronic Safb2 NA NA intronic ENSMUSG00000042625 NA NA 17qD NA NA chr17 56714289 CCCxGAG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 168 8 0 86.772379 0.507692 0.02 1.125275 32 33 876 906 60 60 0 0 TT 20.754966 69 0 1932 0 KEEP - Safb2 YES AA_4 chr17 57333358 57333358 T A exonic Tnfsf14 synonymous SNV NM_019418:c.A135T:p.L45L exonic Tnfsf14 synonymous SNV uc008def.1:c.A135T:p.L45L exonic ENSMUSG00000005824 synonymous SNV ENSMUST00000005976:c.A135T:p.L45L 17qD NA NA chr17 57333358 ACCxAGC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 62 0 0 45.427961 0.727273 0.02 -0.201666 6 16 164 434 60 60 0 0 TT 9.015385 30 0 809 0 KEEP - Tnfsf14 YES AA_4 chr17 68210619 68210619 T A exonic Arhgap28 synonymous SNV NM_172964:c.A1542T:p.T514T exonic Arhgap28 synonymous SNV uc008dki.2:c.A1389T:p.T463T exonic ENSMUSG00000024043 synonymous SNV ENSMUST00000163865:c.A1389T:p.T463T 17qE1.2 NA NA chr17 68210619 CGCxGTG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.457242 0.457757 0.998875 61 0 0 21.928029 0.409091 0.02 -0.192908 13 9 364 241 60 60 0 0 TT 8.421824 28 0 778 0 KEEP - Arhgap28 YES AA_4 chr17 71324900 71324900 T G exonic Myl12b nonsynonymous SNV NM_023402:c.A245C:p.N82T exonic Myl12b nonsynonymous SNV uc008dlv.1:c.A245C:p.N82T exonic ENSMUSG00000034868 nonsynonymous SNV ENSMUST00000038446:c.A245C:p.N82T 17qE1.3 NA NA chr17 71324900 AAAxTGA T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 159 0 0 113.120078 0.561644 0.02 1.153436 32 41 857 1153 60 60 0 0 TT 20.115616 67 0 1803 0 KEEP - Myl12b NO AA_4 chr17 73857171 73857171 T A intronic Galnt14 NA NA intronic Galnt14 NA NA exonic ENSMUSG00000024064 synonymous SNV ENSMUST00000112591:c.A1236T:p.P412P 17qE2 NA NA chr17 73857171 CACxGGC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693605 0.693668 0.999909 67 0 0 48.911714 0.6 0.02 -0.263047 12 18 332 491 60 60 0 0 TT 7.218737 24 0 665 0 KEEP - Galnt14 YES AA_4 chr17 73857173 73857173 G C intronic Galnt14 NA NA intronic Galnt14 NA NA exonic ENSMUSG00000024064 nonsynonymous SNV ENSMUST00000112591:c.C1234G:p.P412A 17qE2 NA NA chr17 73857173 CTGxCAG G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693605 0.693668 0.999909 67 0 0 48.794377 0.6 0.02 -0.262905 12 18 340 490 60 60 0 0 GG 7.219132 24 0 672 0 KEEP - Galnt14 NO AA_4 chr17 74766672 74766672 G C exonic Spast nonsynonymous SNV NM_001162870:c.G761C:p.G254A exonic Spast nonsynonymous SNV uc008dnz.2:c.G758C:p.G253A exonic ENSMUSG00000024068 nonsynonymous SNV ENSMUST00000024869:c.G761C:p.G254A 17qE2 NA NA chr17 74766672 GTGxCTC G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38738 0.387407 0.999931 48 0 0 29.30251 0.55 0.02 -0.17459 9 11 236 300 60 60 0 0 GG 7.51784 25 0 679 0 KEEP + Spast NO AA_4 chr17 79082237 79082237 T A exonic Strn synonymous SNV NM_011500:c.A726T:p.A242A exonic Strn synonymous SNV uc008doz.1:c.A267T:p.A89A exonic ENSMUSG00000024077 synonymous SNV ENSMUST00000024881:c.A267T:p.A89A 17qE3 NA NA chr17 79082237 ATCxGCA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 46 0 0 17.536828 0.411765 0.02 -0.149064 10 7 275 192 60 60 0 0 TT 6.917171 23 0 626 0 KEEP - Strn YES AA_4 chr17 80806152 80806152 T A exonic Sos1 synonymous SNV NM_009231:c.A3228T:p.T1076T exonic Sos1 synonymous SNV uc008drg.1:c.A3228T:p.T1076T exonic ENSMUSG00000024241 synonymous SNV ENSMUST00000068714:c.A3228T:p.T1076T 17qE3 NA NA chr17 80806152 TGCxGTG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 210 0 0 109.199823 0.47191 0.02 0.99561 47 42 1287 1159 60 60 0 0 TT 25.562338 85 0 2328 0 KEEP - Sos1 YES AA_4 chr17 86084589 86084589 A C exonic Six2 nonsynonymous SNV NM_011380:c.T825G:p.H275Q exonic Six2 nonsynonymous SNV uc008duc.2:c.T825G:p.H275Q exonic ENSMUSG00000024134 nonsynonymous SNV ENSMUST00000024947:c.T825G:p.H275Q 17qE4 NA NA chr17 86084589 GTGxTGC A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 98 0 0 76.567766 0.538462 0.02 1.328803 24 28 645 788 60 60 0 0 AA 9.588667 32 0 842 0 KEEP - Six2 NO AA_4 chr17 88384193 88384193 T A exonic Msh6 synonymous SNV NM_010830:c.T1035A:p.S345S exonic Msh6 synonymous SNV uc008dvd.2:c.T1035A:p.S345S exonic ENSMUSG00000005370 synonymous SNV ENSMUST00000005503:c.T1035A:p.S345S 17qE4 "Score=0.941713;Name=No.67221,chr4:15746218" NA chr17 88384193 TTCxGAA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 79 0 0 70.816967 0.657895 0.02 -0.333221 13 25 362 695 60 60 0 0 TT 11.429583 38 0 1056 0 KEEP + Msh6 YES AA_4 chr18 14583482 14583482 T C intergenic "8430422H06Rik(dist=146431),Ss18(dist=200656)" NA NA intergenic "Zfp521(dist=452240),Ss18(dist=200656)" NA NA exonic ENSMUSG00000055795 nonsynonymous SNV ENSMUST00000069552:c.T169C:p.F57L 18qA1 NA NA chr18 14583482 AACxTTC T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 296 0 9 156.470671 0.558824 0.02 2.791366 45 57 1260 1597 60 60 0 0 TT 46.877429 156 0 4325 0 KEEP NA 8430422H06Rik NO AA_4 chr18 32584552 32584552 A T exonic Bin1 nonsynonymous SNV NM_001083334:c.A843T:p.R281S exonic Bin1 nonsynonymous SNV uc008eji.1:c.A843T:p.R281S exonic ENSMUSG00000024381 nonsynonymous SNV ENSMUST00000091967:c.A843T:p.R281S 18qB1 NA NA chr18 32584552 CAGxGTG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 129 1 0 89.116438 0.507246 0.02 1.09024 34 35 941 932 60 60 0 0 AA 12.908238 43 0 1187 0 KEEP + Bin1 YES AA_4 chr18 37821868 37821868 A T exonic Pcdhga1 synonymous SNV NM_033584:c.A270T:p.I90I exonic Pcdhga1 synonymous SNV uc008eql.1:c.A270T:p.I90I intergenic "ENSMUSG00000073590(dist=3477),ENSMUSG00000023036(dist=12121)" NA NA 18qB3 NA NA chr18 37821868 GATxGAC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 479 1 0 144.858326 0.432836 0.02 2.207027 76 58 2021 1570 60 60 0 0 AA 79.326946 264 0 7179 0 KEEP + Pcdhga1 YES AA_4 chr18 46516098 46516098 T A intergenic "Ccdc112(dist=44516),Mospd4(dist=108490)" NA NA intergenic "Ccdc112(dist=44516),AK041437(dist=1428)" NA NA exonic ENSMUSG00000090893 nonsynonymous SNV ENSMUST00000172293:c.A524T:p.D175V 18qC NA NA chr18 46516098 TTGxCAG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 40 0 0 13.886829 0.333333 0.02 -0.157817 12 6 322 160 60 60 0 0 TT 5.714613 19 0 523 0 KEEP NA Ccdc112 YES AA_4 chr19 13824020 13824020 C T exonic Olfr1494 synonymous SNV NM_146990:c.C423T:p.T141T exonic Olfr1494 synonymous SNV uc008gvx.1:c.C423T:p.T141T exonic ENSMUSG00000050865 synonymous SNV ENSMUST00000051768:c.C423T:p.T141T 19qA NA NA chr19 13824020 GACxAAG C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 200 2 0 11.313356 0.076087 0.02 0.88843 85 7 2435 187 60 60 0 0 CC 27.966906 93 0 2608 0 KEEP + Olfr1494 NO AA_4 chr19 13962301 13962301 A T exonic Olfr1504 nonsynonymous SNV NM_146634:c.T398A:p.M133K exonic Olfr1504 nonsynonymous SNV uc008gwh.1:c.T398A:p.M133K exonic ENSMUSG00000059105 nonsynonymous SNV ENSMUST00000078282:c.T398A:p.M133K 19qA NA NA chr19 13962301 GCCxTGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 166 3 0 104.562288 0.52 0.02 1.136194 36 39 932 1085 60 60 0 0 AA 22.553917 75 0 2009 0 KEEP - Olfr1504 YES AA_4 chr19 30220133 30220133 A T exonic Gldc nonsynonymous SNV NM_138595:c.T851A:p.L284H exonic Gldc nonsynonymous SNV uc008hej.1:c.T851A:p.L284H exonic ENSMUSG00000024827 nonsynonymous SNV ENSMUST00000025778:c.T851A:p.L284H 19qC1 NA NA chr19 30220133 ACAxGTT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 90 0 0 47.035504 0.475 0.02 -0.350704 21 19 592 500 60 60 0 0 AA 12.633582 42 0 1178 0 KEEP - Gldc YES AA_4 chr19 43856936 43856936 A T intronic Abcc2 NA NA intronic Abcc2 NA NA intronic ENSMUSG00000025194 NA NA 19qC3 NA NA chr19 43856936 TACxTTG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 143 0 0 73.583308 0.459016 0.02 1.258679 33 28 872 785 60 60 0 0 AA 19.846335 66 0 1769 0 KEEP + Abcc2 YES AA_4 chr19 44223023 44223023 A T exonic Pkd2l1 nonsynonymous SNV NM_181422:c.T2257A:p.W753R exonic Pkd2l1 nonsynonymous SNV uc008hpm.2:c.T2257A:p.W753R exonic ENSMUSG00000037578 nonsynonymous SNV ENSMUST00000042026:c.T2257A:p.W753R 19qC3 NA NA chr19 44223023 CCCxAAC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 186 1 0 93.198232 0.493333 0.02 1.038399 38 37 1018 981 60 60 0 0 AA 24.66194 82 0 2258 0 KEEP - Pkd2l1 YES AA_4 chr19 46616964 46616964 T A exonic Arl3 stopgain SNV NM_019718:c.A379T:p.K127X exonic Arl3 stopgain SNV uc008htt.1:c.A379T:p.K127X exonic ENSMUSG00000025035 stopgain SNV ENSMUST00000026009:c.A379T:p.K127X 19qC3 NA NA chr19 46616964 GCTxGTT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 184 2 0 100.156612 0.513514 0.02 1.028901 36 38 969 1043 60 60 0 0 TT 26.715224 89 0 2375 0 KEEP - Arl3 YES AA_4 chr19 4731890 4731890 T A intronic Sptbn2 NA NA intronic Spnb3 NA NA intronic ENSMUSG00000067889 NA NA 19qA NA NA chr19 4731890 CCCxGGT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954488 0.954491 0.999997 85 0 0 68.084464 0.530612 0.02 -0.429654 23 26 643 704 60 60 0 0 TT 8.121182 27 0 750 0 KEEP + Sptbn2 YES AA_4 chr19 47806306 47806306 A C exonic Sfr1 nonsynonymous SNV NM_026377:c.A8C:p.E3A exonic 6330577E15Rik nonsynonymous SNV uc008hvk.1:c.A8C:p.E3A exonic ENSMUSG00000025066 nonsynonymous SNV ENSMUST00000099352:c.A8C:p.E3A 19qD1 NA NA chr19 47806306 CTGxGGA A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 184 0 0 38.168864 0.395349 0.02 -0.38572 26 17 725 426 60 60 0 0 AA 30.368604 101 0 2783 0 KEEP + Sfr1 NO AA_4 chr19 6928042 6928042 T A exonic Ccdc88b nonsynonymous SNV NM_001081291:c.A2021T:p.E674V exonic Ccdc88b nonsynonymous SNV uc008gjb.1:c.A2021T:p.E674V exonic ENSMUSG00000047810 nonsynonymous SNV ENSMUST00000113440:c.A2021T:p.E674V 19qA NA NA chr19 6928042 AGTxCCC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 208 0 0 121.603138 0.544444 0.02 0.808392 41 49 1129 1252 60 60 0 0 TT 27.970296 93 0 2565 0 KEEP - Ccdc88b YES AA_4 chr19 8753306 8753306 A G exonic Chrm1 nonsynonymous SNV NM_007698:c.A884G:p.E295G exonic Chrm1 nonsynonymous SNV uc008gmf.2:c.A884G:p.E295G exonic ENSMUSG00000032773 nonsynonymous SNV ENSMUST00000035444:c.A884G:p.E295G 19qA NA NA chr19 8753306 AGGxGCC A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.999859 41 0 0 17.16427 0.318182 0.02 -0.192909 15 7 411 198 60 60 0 0 AA 5.376076 18 0 468 0 KEEP + Chrm1 NO AA_4 chr1 133497095 133497095 C G exonic Avpr1b nonsynonymous SNV NM_011924:c.C778G:p.P260A exonic Avpr1b nonsynonymous SNV uc007cnl.1:c.C778G:p.P260A exonic ENSMUSG00000026432 nonsynonymous SNV ENSMUST00000027690:c.C778G:p.P260A 1qE4 NA NA chr1 133497095 CTGxCGT C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 73 0 0 26.402662 0.34375 0.02 -0.280514 21 11 579 301 60 60 0 0 CC 10.19013 34 0 895 0 KEEP + Avpr1b NO AA_4 chr1 134496742 134496742 T A exonic Nfasc synonymous SNV NM_001160316:c.A2553T:p.T851T exonic Nfasc synonymous SNV uc007cpd.2:c.A2457T:p.T819T exonic ENSMUSG00000026442 synonymous SNV ENSMUST00000043189:c.A2457T:p.T819T 1qE4 NA NA chr1 134496742 GGCxGTG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 54 0 0 47.42156 0.761905 0.02 -0.184151 5 16 140 448 60 60 0 0 TT 8.405077 28 0 744 0 KEEP - Nfasc YES AA_4 chr1 136383708 136383708 A T exonic Klhl12 synonymous SNV NM_153128:c.A1257T:p.A419A exonic Klhl12 synonymous SNV uc007csa.1:c.A1257T:p.A419A exonic ENSMUSG00000026455 synonymous SNV ENSMUST00000027725:c.A1257T:p.A419A 1qE4 NA NA chr1 136383708 CGCxGGA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 205 2 0 109.851934 0.512195 0.02 0.949911 40 42 1104 1145 60 60 0 0 AA 27.670715 92 0 2547 0 KEEP + Klhl12 YES AA_4 chr1 152589493 152589493 G C intronic Hmcn1 NA NA ncRNA_intronic AK143102 NA NA intronic ENSMUSG00000066842 NA NA 1qG1 NA NA chr1 152589493 CTAxTAG G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 98 0 0 62.860356 0.578947 0.02 -0.333236 16 22 442 636 60 60 0 0 GG 13.835194 46 0 1266 0 KEEP - Hmcn1 NO AA_4 chr1 166057398 166057398 C A exonic Selp synonymous SNV NM_011347:c.C552A:p.S184S exonic Selp synonymous SNV uc007dia.1:c.C549A:p.S183S exonic ENSMUSG00000026580 synonymous SNV ENSMUST00000086043:c.C549A:p.S183S 1qH2.2 NA NA chr1 166057398 CTCxTGC C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 124 2 0 86.056907 0.589286 0.02 1.10633 23 33 668 868 60 60 0 0 CC 14.738552 49 0 1387 0 KEEP + Selp NO AA_4 chr1 172249012 172249012 T A exonic Nos1ap nonsynonymous SNV NM_001109985:c.A1103T:p.Q368L exonic Nos1ap nonsynonymous SNV uc011wvt.1:c.A1103T:p.Q368L exonic ENSMUSG00000038473 nonsynonymous SNV ENSMUST00000160456:c.A1103T:p.Q368L 1qH3 NA NA chr1 172249012 TCCxGGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.55282 0.552887 0.999879 47 0 0 28.120532 0.666667 0.02 -0.219219 5 10 140 275 60 60 0 0 TT 6.616609 22 0 602 0 KEEP - Nos1ap YES AA_4 chr1 174162390 174162390 A T exonic Atp1a4 nonsynonymous SNV NM_013734:c.T2402A:p.L801Q exonic Atp1a4 nonsynonymous SNV uc011wwk.1:c.T2402A:p.L801Q exonic ENSMUSG00000007107 nonsynonymous SNV ENSMUST00000111243:c.T2402A:p.L801Q 1qH3 NA NA chr1 174162390 AACxGCA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 142 0 0 51.732125 0.368421 0.02 1.195601 36 21 981 580 60 60 0 0 AA 18.647036 62 0 1712 0 KEEP - Atp1a4 YES AA_4 chr1 21216131 21216131 A C intronic Tmem14a NA NA intronic Tmem14a NA NA intronic ENSMUSG00000025933 NA NA 1qA4 NA NA chr1 21216131 GTAxGTG A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 116 0 0 54.651554 0.571429 0.02 -0.367975 18 24 502 557 60 60 0 0 AA 17.145035 57 0 1598 0 KEEP + Tmem14a NO AA_4 chr1 46381704 46381704 A G exonic Dnah7b synonymous SNV NM_001160386:c.A10638G:p.K3546K exonic Dnahc7b synonymous SNV uc007awx.2:c.A10638G:p.K3546K exonic ENSMUSG00000041144 synonymous SNV ENSMUST00000069293:c.A10638G:p.K3546K 1qC1.1 "Score=0.938873;Name=No.185,chr1:46800562" NA chr1 46381704 GAAxGTT A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 350 2 19 79.859727 0.314286 0.02 2.666314 72 33 2017 925 60 60 0 0 AA 51.431504 171 0 4778 0 KEEP + Dnah7b NO AA_4 chr1 58967071 58967071 G A exonic Trak2 synonymous SNV NM_172406:c.C1413T:p.P471P exonic Trak2 synonymous SNV uc007bcv.2:c.C1413T:p.P471P exonic ENSMUSG00000026028 synonymous SNV ENSMUST00000174120:c.C1413T:p.P471P 1qC1.3 NA NA chr1 58967071 TGGxGGG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999998 68 0 0 26.76018 0.526316 0.02 -0.254304 9 10 250 277 60 60 0 0 GG 10.226846 34 0 947 0 KEEP - Trak2 NO AA_4 chr1 74953961 74953961 G A exonic Ccdc108 nonsynonymous SNV NM_001039495:c.C4045T:p.H1349Y exonic Ccdc108 nonsynonymous SNV uc007bnj.1:c.C4045T:p.H1349Y exonic ENSMUSG00000047021 nonsynonymous SNV ENSMUST00000094844:c.C4045T:p.H1349Y 1qC3 NA NA chr1 74953961 TGTxGAA G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 252 0 0 121.354267 0.5625 0.02 1.092212 35 45 984 1237 60 60 0 0 GG 37.625457 134 1 3770 25 KEEP - Ccdc108 NO AA_4 chr1 75358890 75358890 T A exonic Des nonsynonymous SNV NM_010043:c.T639A:p.D213E exonic Des nonsynonymous SNV uc007box.1:c.T639A:p.D213E exonic ENSMUSG00000026208 nonsynonymous SNV ENSMUST00000027409:c.T639A:p.D213E 1qC4 NA NA chr1 75358890 GGAxGTG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 101 0 0 91.81879 0.775 0.02 -0.350741 9 31 238 863 60 60 0 0 TT 12.929957 43 0 1156 0 KEEP + Des YES AA_4 chr1 80196691 80196691 T A exonic Fam124b nonsynonymous SNV NM_173425:c.A1165T:p.R389W exonic Fam124b nonsynonymous SNV uc007brb.2:c.A1165T:p.R389W exonic ENSMUSG00000043230 nonsynonymous SNV ENSMUST00000058748:c.A1165T:p.R389W 1qC4 NA NA chr1 80196691 CCCxGGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 188 0 0 59.682918 0.387097 0.02 1.250075 38 24 1029 662 60 60 0 0 TT 29.175519 97 0 2688 0 KEEP - Fam124b YES AA_4 chr1 90313766 90313766 T A intronic Spp2 NA NA intronic Spp2 NA NA intronic ENSMUSG00000026295 NA NA 1qD NA NA chr1 90313766 ATGxAGT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 85 0 0 59.559111 0.578947 0.02 -0.333157 16 22 411 603 60 60 0 0 TT 11.728539 39 0 1049 0 KEEP + Spp2 YES AA_4 chr1 9536938 9536938 G T UTR3 Rrs1 NA NA UTR3 Rrs1 NA NA UTR3 ENSMUSG00000061024 NA NA 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536938 CTTxACT G T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 299 10 5 17.505325 0.107527 0.02 0.773003 83 10 2396 265 60 46 0 0 GG 41.529006 148 1 4229 28 KEEP + Rrs1 NO AA_4 chr1 99682600 99682600 A G exonic Gin1 synonymous SNV NM_026250:c.A1047G:p.K349K exonic Gin1 synonymous SNV uc007cfn.1:c.A1047G:p.K349K exonic ENSMUSG00000026333 synonymous SNV ENSMUST00000027571:c.A780G:p.K260K 1qD NA NA chr1 99682600 TAAxAAG A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 80 0 0 78.62977 0.613636 0.02 -0.385869 17 27 473 785 60 60 0 0 AA 9.324295 31 0 862 0 KEEP + Gin1 NO AA_4 chr2 109566189 109566189 A C UTR3 Bdnf NA NA UTR3 Bdnf NA NA UTR3 ENSMUSG00000048482 NA NA 2qE3 NA NA chr2 109566189 GTTxGAA A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 118 0 0 72.890836 0.5 0.02 1.30257 28 28 754 764 60 60 0 0 AA 14.736432 49 0 1335 0 KEEP + Bdnf NO AA_4 chr2 118586111 118586111 G C exonic A430105I19Rik synonymous SNV NM_001001982:c.C600G:p.G200G exonic A430105I19Rik synonymous SNV uc008lsn.1:c.C600G:p.G200G exonic ENSMUSG00000045838 synonymous SNV ENSMUST00000059997:c.C600G:p.G200G 2qE5 NA NA chr2 118586111 CCGxCCT G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 154 0 0 80.896145 0.462687 0.02 1.18848 36 31 1015 862 60 60 0 0 GG 20.138179 67 0 1815 0 KEEP - A430105I19Rik NO AA_4 chr2 119600711 119600711 T C exonic Rpap1 nonsynonymous SNV NM_001163701:c.A1184G:p.H395R exonic Rpap1 nonsynonymous SNV uc008lul.2:c.A1184G:p.H395R exonic ENSMUSG00000034032 nonsynonymous SNV ENSMUST00000048493:c.A1184G:p.H395R 2qE5 NA NA chr2 119600711 TGGxGCA T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 168 0 0 76.934997 0.426667 0.02 1.136217 43 32 1118 839 60 60 0 0 TT 20.148442 67 0 1803 0 KEEP - Rpap1 NO AA_4 chr2 120832758 120832758 A T exonic Tmem62 synonymous SNV NM_175285:c.A1809T:p.T603T exonic Tmem62 synonymous SNV uc008lxf.1:c.A1419T:p.T473T exonic ENSMUSG00000054484 synonymous SNV ENSMUST00000110686:c.A1419T:p.T473T 2qE5 NA NA chr2 120832758 TACxTTC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 109 0 0 121.196125 0.974359 0.02 -0.341981 1 38 26 1051 60 60 0 0 AA 17.410855 58 0 1500 0 KEEP + Tmem62 YES AA_4 chr2 122280176 122280176 T G intronic Slc28a2 NA NA intronic Slc28a2 NA NA intronic ENSMUSG00000027219 NA NA 2qE5 "Score=0.915092;Name=No.75338,chr2:122338591" NA chr2 122280176 GAGxGAT T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 166 2 1 16.269974 0.145161 0.02 1.153908 53 9 1344 231 60 60 0 0 TT 23.431782 78 0 2016 0 KEEP + Slc28a2 NO AA_4 chr2 129863283 129863283 T A exonic Tgm3 nonsynonymous SNV NM_009374:c.T1058A:p.L353Q exonic Tgm3 nonsynonymous SNV uc008mig.1:c.T1058A:p.L353Q exonic ENSMUSG00000027401 nonsynonymous SNV ENSMUST00000028886:c.T1058A:p.L353Q 2qF1 NA NA chr2 129863283 TCCxGGA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552864 0.552887 0.999957 64 0 0 35.583496 0.52 0.02 -0.21922 12 13 325 369 60 60 0 0 TT 7.806995 26 0 689 0 KEEP + Tgm3 YES AA_4 chr2 130417595 130417595 T C exonic Ubox5 nonsynonymous SNV NM_001255994:c.A1567G:p.T523A exonic Ubox5 nonsynonymous SNV uc008mji.2:c.A1567G:p.T523A exonic ENSMUSG00000027300 nonsynonymous SNV ENSMUST00000166841:c.A1567G:p.T523A 2qF1 NA NA chr2 130417595 CTGxGCA T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 75 0 0 40.764335 0.485714 0.02 -0.324243 18 17 477 432 60 60 0 0 TT 9.315745 31 0 826 0 KEEP - Ubox5 NO AA_4 chr2 131828629 131828629 T A exonic Rassf2 nonsynonymous SNV NM_175445:c.A628T:p.N210Y exonic Rassf2 nonsynonymous SNV uc008mmf.2:c.A628T:p.N210Y exonic ENSMUSG00000027339 nonsynonymous SNV ENSMUST00000028814:c.A628T:p.N210Y 2qF2 NA NA chr2 131828629 TGTxGAG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 265 0 0 160.491828 0.575472 0.02 2.550608 45 61 1242 1628 60 60 0 0 TT 35.189893 117 0 3222 0 KEEP - Rassf2 YES AA_4 chr2 150017590 150017590 A T splicing Gm14139(NM_001145863:exon4:c.192-2A>T) NA NA splicing Gm14139(uc012cfr.1:exon4:c.192-2A>T) NA NA splicing "ENSMUSG00000079009(ENSMUST00000109926:exon4:c.96-2A>T,ENSMUST00000109929:exon3:c.189-2A>T)" NA NA 2qG3 "Score=0.969571;Name=No.75375,chr2:150292399" NA chr2 150017590 TGCxGGC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 71 3 1 45.306783 0.615385 0.02 -0.227992 10 16 271 452 60 60 0 0 AA 8.406744 28 0 766 0 KEEP + Gm14139 YES AA_4 chr2 151532175 151532175 G C exonic Tmem74b nonsynonymous SNV NM_001160363:c.G85C:p.A29P exonic 5430405G05Rik nonsynonymous SNV uc008nei.2:c.G85C:p.A29P exonic ENSMUSG00000044364 nonsynonymous SNV ENSMUST00000060196:c.G85C:p.A29P 2qG3 NA NA chr2 151532175 GTGxCGC G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 116 0 0 56.90869 0.423077 0.02 1.302484 30 22 833 618 60 60 0 0 GG 13.532943 45 0 1245 0 KEEP + Tmem74b NO AA_4 chr2 153021022 153021022 A T intronic Tm9sf4 NA NA intronic Tm9sf4 NA NA intronic ENSMUSG00000068040 NA NA 2qH1 NA NA chr2 153021022 CTGxGCC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 392 5 0 164.518905 0.435897 0.02 3.522143 88 68 2427 1785 60 60 0 0 AA 52.314343 174 0 4806 0 KEEP + Tm9sf4 YES AA_4 chr2 158436996 158436996 A T exonic Slc32a1 nonsynonymous SNV NM_009508:c.A19T:p.S7C exonic Slc32a1 nonsynonymous SNV uc008nqk.1:c.A19T:p.S7C exonic ENSMUSG00000037771 nonsynonymous SNV ENSMUST00000045738:c.A19T:p.S7C 2qH1 NA NA chr2 158436996 CGCxGCA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 45 0 0 19.363695 0.347826 0.02 -0.201653 15 8 396 220 60 60 0 0 AA 5.111776 17 0 456 0 KEEP + Slc32a1 YES AA_4 chr2 166472461 166472461 C T intronic Prex1 NA NA exonic Prex1 nonsynonymous SNV uc008nyo.1:c.G289A:p.V97I intronic ENSMUSG00000039621 NA NA 2qH3 NA NA chr2 166472461 CAAxGGG C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 60 0 0 35.591824 0.583333 0.02 -0.210397 10 14 271 360 60 60 0 0 CC 8.417054 28 0 723 0 KEEP - Prex1 NO AA_4 chr2 174263678 174263678 T A exonic Ctsz nonsynonymous SNV NM_022325:c.A301T:p.S101C exonic Ctsz nonsynonymous SNV uc008ofd.1:c.A301T:p.S101C exonic ENSMUSG00000016256 nonsynonymous SNV ENSMUST00000016400:c.A301T:p.S101C 2qH4 NA NA chr2 174263678 CACxGGT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 49 0 0 25.130237 0.434783 0.02 -0.210424 13 10 364 272 60 60 0 0 TT 5.715382 19 0 536 0 KEEP - Ctsz YES AA_4 chr2 180235713 180235713 G A exonic Ntsr1 synonymous SNV NM_018766:c.G591A:p.A197A exonic Ntsr1 synonymous SNV uc008ojg.1:c.G591A:p.A197A exonic ENSMUSG00000027568 synonymous SNV ENSMUST00000029084:c.G591A:p.A197A 2qH4 NA NA chr2 180235713 GGCxCTG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 57 0 0 42.029564 0.64 0.02 -0.219163 9 16 244 415 60 60 0 0 GG 8.691105 29 0 744 0 KEEP + Ntsr1 NO AA_4 chr2 180720737 180720737 A T upstream Col20a1 NA NA ncRNA_exonic AK030308 NA NA upstream;downstream ENSMUSG00000016356;ENSMUSG00000070461 NA NA 2qH4 NA NA chr2 180720737 CCTxCTG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 111 0 0 63.807219 0.431034 0.02 1.169172 33 25 860 691 60 60 0 0 AA 11.726534 39 0 1031 0 KEEP + Col20a1 YES AA_4 chr2 181732240 181732240 C T exonic Gm14496 nonsynonymous SNV NM_001205282:c.C1417T:p.L473F intergenic "Polr3k(dist=126709),NONE(dist=NONE)" NA NA intergenic "ENSMUSG00000053277(dist=1105),NONE(dist=NONE)" NA NA 2qH4 NA NA chr2 181732240 GGCxTTG C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 418 50 17 10.812209 0.051852 0.02 2.021062 128 7 3608 194 60 20 0 0 CC 68.283293 227 0 6408 0 KEEP + Gm14496 NO AA_4 chr2 25135885 25135885 G C exonic Anapc2 nonsynonymous SNV NM_175300:c.G1814C:p.G605A exonic Anapc2 nonsynonymous SNV uc008ire.2:c.G1346C:p.G449A exonic ENSMUSG00000026965 nonsynonymous SNV ENSMUST00000028341:c.G1814C:p.G605A 2qA3 NA NA chr2 25135885 TTGxGGT G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 38 0 0 9.767671 0.3125 0.02 -0.149029 11 5 319 117 60 60 0 0 GG 4.812685 16 0 446 0 KEEP + Anapc2 NO AA_4 chr2 25324438 25324438 A T intronic Ptgds NA NA intronic Ptgds NA NA intronic ENSMUSG00000015090 NA NA 2qA3 NA NA chr2 25324438 GGTxGAT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 238 0 0 167.887557 0.485075 0.02 2.198056 69 65 1854 1772 60 60 0 0 AA 22.857062 76 0 2078 0 KEEP - Ptgds YES AA_4 chr2 26211011 26211011 A T exonic Card9 nonsynonymous SNV NM_001037747:c.T1111A:p.C371S exonic Card9 nonsynonymous SNV uc008iut.1:c.T1111A:p.C371S exonic ENSMUSG00000026928 nonsynonymous SNV ENSMUST00000100303:c.T1111A:p.C371S 2qA3 NA NA chr2 26211011 TACxCTG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 89 0 0 67.197476 0.555556 0.02 -0.394539 20 25 520 687 60 60 0 0 AA 11.123927 37 0 989 0 KEEP - Card9 YES AA_4 chr2 27938446 27938446 G A exonic Fcnb nonsynonymous SNV NM_010190:c.C161T:p.A54V exonic Fcnb nonsynonymous SNV uc008ixv.1:c.C161T:p.A54V exonic ENSMUSG00000026835 nonsynonymous SNV ENSMUST00000028179:c.C161T:p.A54V 2qA3 NA NA chr2 27938446 CCTxCCT G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 231 0 0 109.470094 0.542169 0.02 0.861006 38 45 1087 1129 60 60 0 0 GG 31.884418 106 0 2981 0 KEEP - Fcnb NO AA_4 chr2 28085170 28085170 G T exonic Olfm1 synonymous SNV NM_001038613:c.G1296T:p.A432A exonic Olfm1 synonymous SNV uc008iyb.1:c.G1296T:p.A432A exonic ENSMUSG00000026833 synonymous SNV ENSMUST00000028177:c.G1380T:p.A460A 2qA3 NA NA chr2 28085170 CGCxCTG G T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 210 0 0 127.213046 0.533333 0.02 0.906685 42 48 1062 1313 60 60 0 0 GG 30.619931 105 1 2624 8 KEEP + Olfm1 NO AA_4 chr2 30032136 30032136 T A exonic D2Wsu81e synonymous SNV NM_172660:c.A510T:p.A170A exonic D2Wsu81e synonymous SNV uc008jbl.2:c.A390T:p.A130A exonic ENSMUSG00000039660 synonymous SNV ENSMUST00000044268:c.A390T:p.A130A 2qB NA NA chr2 30032136 ACCxGCA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 295 3 0 190.703831 0.510638 0.02 2.252406 69 72 1890 1988 60 60 0 0 TT 32.164372 107 0 2929 0 KEEP - D2Wsu81e YES AA_4 chr2 32612779 32612779 T A UTR5 Tor2a NA NA upstream Tor2a NA NA exonic ENSMUSG00000039021 nonsynonymous SNV ENSMUST00000091059:c.A2120T:p.Q707L 2qB NA NA chr2 32612779 TTCxGGC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.71576 0.717315 0.997832 53 0 0 15.764186 0.233333 0.02 -0.271564 23 7 626 195 60 60 0 0 TT 4.812209 16 0 441 0 KEEP + Tor2a YES AA_4 chr2 32765342 32765342 A G intronic Fam129b NA NA intronic Fam129b NA NA intronic ENSMUSG00000026796 NA NA 2qB NA NA chr2 32765342 GGGxCCG A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 0.999999 79 0 0 46.738145 0.548387 0.02 -0.280594 14 17 380 479 60 60 0 0 AA 10.80174 36 0 976 0 KEEP + Fam129b NO AA_4 chr2 32765344 32765344 C T intronic Fam129b NA NA intronic Fam129b NA NA intronic ENSMUSG00000026796 NA NA 2qB NA NA chr2 32765344 GACxGCC C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 79 0 0 46.238452 0.548387 0.02 -0.280595 14 17 383 474 60 60 0 0 CC 10.827572 36 0 993 0 KEEP + Fam129b NO AA_4 chr2 33501263 33501263 C T downstream C130021I20Rik NA NA ncRNA_exonic AK081497 NA NA ncRNA_exonic ENSMUSG00000052951 NA NA 2qB NA NA chr2 33501263 ACAxGGC C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 64 0 0 41.422669 0.571429 0.02 -0.245454 12 16 317 421 60 60 0 0 CC 8.710922 29 0 696 0 KEEP + C130021I20Rik NO AA_4 chr2 40533049 40533049 C T exonic Lrp1b nonsynonymous SNV NM_053011:c.G12185A:p.R4062K exonic Lrp1b nonsynonymous SNV uc008jom.1:c.G857A:p.R286K exonic ENSMUSG00000049252 nonsynonymous SNV ENSMUST00000052550:c.G12278A:p.R4093K 2qB NA NA chr2 40533049 CTCxTCA C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 98 0 0 32.475762 0.361111 0.02 -0.333237 23 13 655 365 60 60 0 0 CC 12.634504 42 0 1197 0 KEEP - Lrp1b NO AA_4 chr2 52004366 52004366 A T exonic Neb synonymous SNV NM_010889:c.T20940A:p.R6980R exonic Neb synonymous SNV uc008jqu.1:c.T1704A:p.R568R exonic ENSMUSG00000026950 synonymous SNV ENSMUST00000028320:c.T8616A:p.R2872R 2qC1.1 NA NA chr2 52004366 GACxCGC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.80019 0.800245 0.999931 67 0 0 42.435278 0.5 0.02 -0.306433 17 17 442 446 60 60 0 0 AA 7.517977 25 0 670 0 KEEP - Neb YES AA_4 chr2 52020770 52020770 A T exonic Neb nonsynonymous SNV NM_010889:c.T19273A:p.S6425T exonic Neb nonsynonymous SNV uc008jqv.1:c.T19273A:p.S6425T exonic ENSMUSG00000026950 nonsynonymous SNV ENSMUST00000028320:c.T7228A:p.S2410T 2qC1.1 NA NA chr2 52020770 TGGxCTC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 52 0 0 12.022723 0.357143 0.02 -0.140244 9 5 241 136 60 60 0 0 AA 8.700928 29 0 765 0 KEEP - Neb YES AA_4 chr2 55290067 55290067 A T exonic Kcnj3 synonymous SNV NM_008426:c.A456T:p.T152T exonic Kcnj3 synonymous SNV uc008jru.1:c.A456T:p.T152T exonic ENSMUSG00000026824 synonymous SNV ENSMUST00000112632:c.A456T:p.T152T 2qC1.1 NA NA chr2 55290067 CACxGAT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 201 1 0 128.070242 0.49 0.02 2.496524 51 49 1375 1348 60 60 0 0 AA 23.002869 81 1 2209 12 KEEP + Kcnj3 YES AA_4 chr2 64936671 64936671 A C exonic Cobll1 synonymous SNV NM_027225:c.T2367G:p.T789T exonic Cobll1 synonymous SNV uc008jvz.2:c.T2364G:p.T788T exonic ENSMUSG00000034903 synonymous SNV ENSMUST00000090896:c.T2367G:p.T789T 2qC1.3 NA NA chr2 64936671 GGAxGTT A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 60 0 0 30.030585 0.448276 0.02 -0.254213 16 13 443 325 60 60 0 0 AA 7.519707 25 0 697 0 KEEP - Cobll1 NO AA_4 chr2 68546998 68546998 G C intronic 4932414N04Rik NA NA intronic 4932414N04Rik NA NA intronic ENSMUSG00000048204 NA NA 2qC2 NA NA chr2 68546998 TGTxAGT G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973964 0.973965 0.999999 108 0 0 67.131292 0.462963 0.02 1.319964 29 25 838 714 60 60 0 0 GG 10.52904 35 0 1006 0 KEEP + 4932414N04Rik NO AA_4 chr2 76719835 76719835 T A exonic Ttn synonymous SNV NM_011652:c.A21951T:p.T7317T exonic Ttn synonymous SNV uc008kfn.1:c.A21951T:p.T7317T exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000148747:c.A3678T:p.T1226T 2qC3 NA NA chr2 76719835 TCTxGTA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 107 0 0 73.062295 0.538462 0.02 1.230567 24 28 639 753 60 60 0 0 TT 13.234588 44 0 1223 0 KEEP - Ttn YES AA_4 chr2 76741301 76741301 T A exonic Ttn synonymous SNV NM_011652:c.A11040T:p.T3680T exonic Ttn synonymous SNV uc008kfn.1:c.A11040T:p.T3680T exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000134720:c.A1017T:p.T339T 2qC3 NA NA chr2 76741301 GATxGTG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 121 0 0 68.858594 0.444444 0.02 1.142952 35 28 942 743 60 60 0 0 TT 14.135301 47 0 1291 0 KEEP - Ttn YES AA_4 chr2 76776940 76776940 C T exonic Ttn nonsynonymous SNV NM_028004:c.G8332A:p.V2778I exonic Ttn nonsynonymous SNV uc008kfo.1:c.G8332A:p.V2778I exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.G8332A:p.V2778I 2qC3 NA NA chr2 76776940 AAAxACT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 140 0 0 87.102814 0.493151 0.02 0.746195 37 36 1026 919 60 60 0 0 CC 15.63496 52 0 1463 0 KEEP - Ttn NO AA_4 chr2 84510671 84510671 C G exonic 2700094K13Rik unknown UNKNOWN exonic 2700094K13Rik unknown UNKNOWN exonic ENSMUSG00000076437 unknown UNKNOWN 2qD NA NA chr2 84510671 CCGxCAG C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 526 0 0 215.567505 0.466292 0.02 3.793529 95 83 2683 2294 60 60 0 0 CC 74.478454 248 0 6812 0 KEEP - 2700094K13Rik NO AA_4 chr2 85971380 85971380 T A exonic Olfr1039 nonsynonymous SNV NM_001011784:c.A439T:p.S147C exonic Olfr1039 nonsynonymous SNV uc008klp.1:c.A439T:p.S147C exonic ENSMUSG00000075204 nonsynonymous SNV ENSMUST00000099910:c.A439T:p.S147C 2qD "Score=0.93619;Name=No.75235,chr2:85985950" NA chr2 85971380 TGCxGGT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 136 0 9 102.972306 0.59375 0.02 1.134491 26 38 670 1036 60 60 0 0 TT 16.843455 56 0 1548 0 KEEP - Olfr1039 YES AA_4 chr2 87275357 87275357 A T exonic Olfr1124 stopgain SNV NM_147028:c.A712T:p.K238X exonic Olfr1124 stopgain SNV uc008kny.1:c.A712T:p.K238X exonic ENSMUSG00000050772 stopgain SNV ENSMUST00000062494:c.A712T:p.K238X 2qD NA NA chr2 87275357 ACCxAAA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 114 1 0 72.194039 0.47541 0.02 1.151626 32 29 881 767 60 60 0 0 AA 11.428989 38 0 1046 0 KEEP + Olfr1124 YES AA_4 chr2 88540537 88540537 G C downstream Olfr1196 NA NA downstream Olfr1196 NA NA downstream ENSMUSG00000075120 NA NA 2qE1 NA NA chr2 88540537 GCAxAAT G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 105 0 0 65.672504 0.510204 0.02 -0.429694 24 25 698 685 60 60 0 0 GG 14.432794 48 0 1367 0 KEEP - Olfr1196 NO AA_4 chr2 89180233 89180233 C T exonic Olfr1233 nonsynonymous SNV NM_146972:c.G225A:p.M75I exonic Olfr1233 nonsynonymous SNV uc008kri.1:c.G225A:p.M75I exonic ENSMUSG00000075091 nonsynonymous SNV ENSMUST00000099784:c.G225A:p.M75I 2qE1 NA NA chr2 89180233 TAGxATC C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 151 0 0 71.490964 0.413333 0.02 0.842426 44 31 1250 788 60 60 0 0 CC 19.243038 64 0 1807 0 KEEP - Olfr1233 NO AA_4 chr2 89959732 89959732 T G exonic Olfr1269 nonsynonymous SNV NM_146342:c.A22C:p.T8P exonic Olfr1269 nonsynonymous SNV uc008ksm.1:c.A22C:p.T8P exonic ENSMUSG00000075067 nonsynonymous SNV ENSMUST00000099756:c.A22C:p.T8P 2qE1 "Score=0.915325;Name=No.75262,chr2:89876805" NA chr2 89959732 CAGxCAC T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 191 1 0 100.752621 0.493506 0.02 1.118535 39 38 1036 1058 60 60 0 0 TT 25.566143 85 0 2353 0 KEEP - Olfr1269 NO AA_4 chr2 91768168 91768168 A T exonic Chrm4 stopgain SNV NM_007699:c.A763T:p.K255X exonic Chrm4 stopgain SNV uc008kwv.2:c.A763T:p.K255X exonic ENSMUSG00000040495 stopgain SNV ENSMUST00000045537:c.A763T:p.K255X 2qE1 NA NA chr2 91768168 AAGxAAC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612341 0.612407 0.999892 53 0 0 27.562782 0.444444 0.02 -0.236686 15 12 409 299 60 60 0 0 AA 6.917522 23 0 631 0 KEEP + Chrm4 YES AA_4 chr3 10247695 10247695 T A exonic Fabp12 nonsynonymous SNV NM_029310:c.A266T:p.N89I exonic Fabp12 nonsynonymous SNV uc008opm.1:c.A266T:p.N89I exonic ENSMUSG00000027530 nonsynonymous SNV ENSMUST00000169802:c.A266T:p.N89I 3qA1 NA NA chr3 10247695 TCAxTAT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229152 0.229173 0.999909 42 0 0 11.444714 0.333333 0.02 -0.131273 10 5 260 132 60 60 0 0 TT 7.218746 24 0 666 0 KEEP - Fabp12 YES AA_4 chr3 116054105 116054105 A T intronic Cdc14a NA NA intronic Cdc14a NA NA intronic ENSMUSG00000033502 NA NA 3qG1 NA NA chr3 116054105 GGCxGGA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 67 0 0 19.111066 0.32 0.02 -0.227986 17 8 470 221 60 60 0 0 AA 8.120761 27 0 744 0 KEEP - Cdc14a YES AA_4 chr3 116344258 116344258 T A exonic Hiat1 nonsynonymous SNV NM_008246:c.A726T:p.Q242H exonic Hiat1 nonsynonymous SNV uc008rco.2:c.A726T:p.Q242H exonic ENSMUSG00000089911 nonsynonymous SNV ENSMUST00000029570:c.A726T:p.Q242H 3qG1 NA NA chr3 116344258 GTCxTGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 62 0 0 29.101754 0.48 0.02 -0.219188 13 12 365 309 60 60 0 0 TT 9.023696 30 0 838 0 KEEP - Hiat1 YES AA_4 chr3 153074671 153074671 T A exonic St6galnac3 synonymous SNV NM_011372:c.A378T:p.R126R exonic St6galnac3 synonymous SNV uc008rtw.1:c.A378T:p.R126R exonic ENSMUSG00000052544 synonymous SNV ENSMUST00000064460:c.A378T:p.R126R 3qH3 NA NA chr3 153074671 AACxCGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 191 2 0 82.150533 0.533333 0.02 1.071284 28 32 772 849 60 60 0 0 TT 32.411109 108 0 2962 0 KEEP - St6galnac3 YES AA_4 chr3 22088844 22088844 A T exonic Tbl1xr1 nonsynonymous SNV NM_030732:c.A359T:p.Q120L exonic Tbl1xr1 nonsynonymous SNV uc008osw.1:c.A359T:p.Q120L exonic ENSMUSG00000027630 nonsynonymous SNV ENSMUST00000063988:c.A359T:p.Q120L 3qA3 NA NA chr3 22088844 ACCxGCA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999998 69 0 0 40.643741 0.6 0.02 -0.298117 10 15 276 408 60 60 0 0 AA 9.926347 33 0 924 0 KEEP + Tbl1xr1 YES AA_4 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 68 3 0 26.091234 0.354839 0.02 -0.315643 20 11 550 296 60 37 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO AA_4 chr3 36887155 36887155 A T exonic 4932438A13Rik synonymous SNV NM_172679:c.A8364T:p.L2788L exonic 4932438A13Rik synonymous SNV uc008pab.2:c.A8364T:p.L2788L exonic ENSMUSG00000037270 synonymous SNV ENSMUST00000152564:c.A8364T:p.L2788L 3qB NA NA chr3 36887155 CCTxGAG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 43 0 0 20.245674 0.444444 0.02 -0.157816 10 8 265 218 60 60 0 0 AA 5.714954 19 0 528 0 KEEP + 4932438A13Rik YES AA_4 chr3 53035733 53035733 C T exonic Lhfp nonsynonymous SNV NM_175386:c.C467T:p.S156F exonic Lhfp nonsynonymous SNV uc008pep.1:c.C467T:p.S156F exonic ENSMUSG00000048332 nonsynonymous SNV ENSMUST00000059562:c.C467T:p.S156F 3qC NA NA chr3 53035733 TCTxTGG C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999768 0.999768 1 222 1 0 124.181944 0.534091 0.02 0.923771 41 47 1186 1282 60 60 0 0 CC 29.479843 98 0 2805 0 KEEP + Lhfp NO AA_4 chr3 55795054 55795054 C T exonic Nbea nonsynonymous SNV NM_030595:c.G4430A:p.R1477Q exonic Nbea nonsynonymous SNV uc008pgu.2:c.G4424A:p.R1475Q exonic ENSMUSG00000027799 nonsynonymous SNV ENSMUST00000029374:c.G4430A:p.R1477Q 3qC NA NA chr3 55795054 TGTxGGC C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.421102 0.423478 0.994391 37 0 0 22.369711 0.428571 0.02 -0.183975 12 9 265 243 60 60 0 0 CC 3.902828 13 0 299 0 KEEP - Nbea NO AA_4 chr3 84756281 84756281 C T UTR5 Fbxw7 NA NA UTR5 Fbxw7 NA NA UTR5 ENSMUSG00000028086 NA NA 3qF1 NA NA chr3 84756281 CTCxTCA C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 115 2 0 45.001552 0.382979 0.02 -0.412161 29 18 829 500 60 60 0 0 CC 14.138217 47 0 1334 0 KEEP + Fbxw7 NO AA_4 chr3 93496496 93496496 T A intergenic "Tdpoz1(dist=16291),Tdpoz4(dist=103824)" NA NA intergenic "Tdpoz1(dist=16291),Tdpoz4(dist=103824)" NA NA exonic ENSMUSG00000091907 nonsynonymous SNV ENSMUST00000165051:c.A499T:p.I167F 3qF2.1 "Score=0.976889;Name=No.81790,chr3:93738357" NA chr3 93496496 TGAxTGC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963771 0.963774 0.999997 125 1 28 103.819417 0.72549 0.02 1.248099 14 37 366 992 19 60 0 0 TT 15.035173 50 0 1343 0 KEEP NA Tdpoz1 YES AA_4 chr3 93577397 93577397 A T intergenic "Tdpoz1(dist=97192),Tdpoz4(dist=22923)" NA NA intergenic "Tdpoz1(dist=97192),Tdpoz4(dist=22923)" NA NA exonic ENSMUSG00000068879 synonymous SNV ENSMUST00000090853:c.A453T:p.I151I 3qF2.1 "Score=0.98925;Name=No.81806,chr3:94043768" NA chr3 93577397 CATxGTA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 259 0 114 43.201752 0.36 0.02 -0.438275 32 18 837 488 29 23 0 0 AA 43.303853 144 0 3905 0 KEEP NA Tdpoz1 YES AA_4 chr3 94577554 94577554 A T exonic Cgn nonsynonymous SNV NM_001037711:c.T1595A:p.L532Q exonic Cgn nonsynonymous SNV uc008qgy.2:c.T1595A:p.L532Q exonic ENSMUSG00000068876 nonsynonymous SNV ENSMUST00000090846:c.T1595A:p.L532Q 3qF2.1 NA NA chr3 94577554 TCCxGTG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 50 0 0 21.806646 0.391304 0.02 -0.201674 14 9 388 242 60 60 0 0 AA 6.015123 20 0 555 0 KEEP - Cgn YES AA_4 chr3 94971915 94971915 C T intronic Sema6c NA NA UTR5 Sema6c NA NA intronic ENSMUSG00000038777 NA NA 3qF2.1 NA NA chr3 94971915 GTTxTCT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 100 0 0 55.469749 0.5 0.02 -0.368317 21 21 608 581 60 60 0 0 CC 14.134336 47 0 1330 0 KEEP + Sema6c NO AA_4 chr4 111566226 111566226 C T exonic Slc5a9 nonsynonymous SNV NM_145551:c.G287A:p.G96E exonic Slc5a9 nonsynonymous SNV uc008udj.2:c.G266A:p.G89E exonic ENSMUSG00000028544 nonsynonymous SNV ENSMUST00000102720:c.G287A:p.G96E 4qD1 NA NA chr4 111566226 GCCxCTG C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 119 2 0 60.537204 0.479167 0.02 -0.438451 25 23 705 640 70 70 0 0 CC 15.340806 51 0 1431 0 KEEP - Slc5a9 NO AA_4 chr4 120568868 120568868 A T intergenic "Rims3(dist=4703),Exo5(dist=24939)" NA NA intergenic "Rims3(dist=4703),Dem1(dist=24939)" NA NA UTR3 ENSMUSG00000032890 NA NA 4qD2.2 NA NA chr4 120568868 CTCxCAG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 77 2 0 29.755759 0.4 0.02 -0.263028 18 12 477 328 60 60 0 0 AA 10.82658 36 0 975 0 KEEP NA Rims3 YES AA_4 chr4 126237468 126237468 A T exonic Clspn stopgain SNV NM_175554:c.A439T:p.R147X exonic Clspn stopgain SNV uc008utl.2:c.A439T:p.R147X exonic ENSMUSG00000042489 stopgain SNV ENSMUST00000048391:c.A439T:p.R147X 4qD2.2 NA NA chr4 126237468 GGCxGAA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 86 0 0 51.371335 0.59375 0.02 -0.280578 13 19 356 517 60 60 0 0 AA 11.430284 38 0 1064 0 KEEP + Clspn YES AA_4 chr4 130490412 130490412 C G exonic Laptm5 nonsynonymous SNV NM_010686:c.C733G:p.P245A exonic Laptm5 nonsynonymous SNV uc008uzv.1:c.C733G:p.P245A exonic ENSMUSG00000028581 nonsynonymous SNV ENSMUST00000116245:c.C733G:p.P245A 4qD2.3 NA NA chr4 130490412 CTGxCCC C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 210 4 0 133.33255 0.544444 0.02 0.996241 41 49 1134 1369 60 60 0 1 CC 26.153696 87 0 2375 0 KEEP + Laptm5 NO AA_4 chr4 130490414 130490414 C T exonic Laptm5 synonymous SNV NM_010686:c.C735T:p.P245P exonic Laptm5 nonsynonymous SNV uc012dlx.1:c.C866T:p.P289L exonic ENSMUSG00000028581 synonymous SNV ENSMUST00000116245:c.C735T:p.P245P 4qD2.3 NA NA chr4 130490414 GCCxCCT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 208 4 0 129.660078 0.538462 0.02 0.889086 42 49 1170 1336 60 60 0 1 CC 25.866931 86 0 2404 0 KEEP + Laptm5 NO AA_4 chr4 131837907 131837907 A T intronic Taf12 NA NA intronic Taf12 NA NA splicing ENSMUSG00000028899 NA NA 4qD2.3 NA NA chr4 131837907 TACxGGT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.99986 50 0 0 31.505912 0.48 0.02 -0.219218 13 12 358 333 60 60 0 0 AA 5.413797 18 0 498 0 KEEP + Taf12 YES AA_4 chr4 132812395 132812395 T A intronic Sytl1 NA NA UTR5 slp1 NA NA intronic ENSMUSG00000028860 NA NA 4qD2.3 NA NA chr4 132812395 TGAxGCC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 69 0 0 25.36389 0.4 0.02 -0.219196 15 10 396 279 60 60 0 0 TT 10.224308 34 0 913 0 KEEP - Sytl1 YES AA_4 chr4 133959032 133959032 A T intronic Pafah2 NA NA intronic Pafah2 NA NA intronic ENSMUSG00000037366 NA NA 4qD3 NA NA chr4 133959032 CCAxGCT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 102 0 0 72.349631 0.56 0.02 1.12389 22 28 614 739 60 60 0 0 AA 11.420601 38 0 1043 0 KEEP + Pafah2 YES AA_4 chr4 134079361 134079361 A T exonic Clhc1 nonsynonymous SNV NM_001081099:c.A701T:p.Y234F exonic 2610002D18Rik nonsynonymous SNV uc008vfg.1:c.A701T:p.Y234F exonic ENSMUSG00000078521 nonsynonymous SNV ENSMUST00000105866:c.A701T:p.Y234F 4qD3 NA NA chr4 134079361 CCTxTAG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934481 0.934492 0.999988 80 0 0 62.91832 0.521739 0.02 -0.403277 22 24 561 653 60 60 0 0 AA 8.08427 27 0 693 0 KEEP + Clhc1 YES AA_4 chr4 137237666 137237666 G T exonic Rap1gap stopgain SNV NM_001081155:c.G40T:p.G14X exonic Rap1gap stopgain SNV uc008vjn.1:c.G40T:p.G14X exonic ENSMUSG00000041351 stopgain SNV ENSMUST00000047243:c.G40T:p.G14X 4qD3 NA NA chr4 137237666 TATxGAG G T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 62 0 0 14.46866 0.352941 0.02 -0.157845 11 6 316 164 60 60 0 0 GG 9.325556 31 0 887 0 KEEP + Rap1gap NO AA_4 chr4 138156053 138156053 A T intronic Vwa5b1 NA NA intronic Vwa5b1 NA NA intronic ENSMUSG00000028753 NA NA 4qD3 NA NA chr4 138156053 CACxCAG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 104 0 0 37.571349 0.384615 0.02 -0.359455 24 15 641 417 60 60 0 0 AA 14.375574 48 0 1179 0 KEEP - Vwa5b1 YES AA_4 chr4 140965674 140965674 G A exonic Clcnkb nonsynonymous SNV NM_019701:c.C1036T:p.H346Y exonic Clcnkb nonsynonymous SNV uc012dob.1:c.C445T:p.H149Y exonic ENSMUSG00000006216 nonsynonymous SNV ENSMUST00000006378:c.C1036T:p.H346Y 4qE1 NA NA chr4 140965674 AGTxGCC G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.758216 0.760887 0.99649 62 1 0 44.77756 0.515152 0.02 -0.289374 16 17 455 466 60 60 0 0 GG 4.512181 15 0 426 0 KEEP - Clcnkb NO AA_4 chr4 141668066 141668066 A T exonic Kazn unknown UNKNOWN exonic 9030409G11Rik stopgain SNV uc008vpv.2:c.T1505A:p.L502X exonic ENSMUSG00000040606 stopgain SNV ENSMUST00000070792:c.T1715A:p.L572X 4qE1 NA NA chr4 141668066 AGCxAGA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119602 0.120436 0.993072 22 0 0 12.392451 0.454545 0.02 -0.096441 6 5 161 133 60 60 0 0 AA 3.308311 11 0 300 0 KEEP - Kazn YES AA_4 chr4 143538811 143538811 C G exonic Gm13109 nonsynonymous SNV NM_001126315:c.G1347C:p.Q449H exonic Gm13109 nonsynonymous SNV uc012dor.1:c.G1347C:p.Q449H exonic ENSMUSG00000078511 nonsynonymous SNV ENSMUST00000105766:c.G1347C:p.Q449H 4qE1 "Score=0.959082;Name=No.86431,chr4:143129484" NA chr4 143538811 AAGxTGG C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 580 10 35 77.31612 0.195531 0.02 3.803678 144 35 4012 990 60 60 0 0 CC 95.020385 316 0 8794 0 KEEP - Gm13109 NO AA_4 chr4 145489259 145489259 G C intergenic "Gm13238(dist=61364),1700095A21Rik(dist=161907)" NA NA exonic Gm13051 nonsynonymous SNV uc008vsa.1:c.G585C:p.Q195H exonic ENSMUSG00000078500 nonsynonymous SNV ENSMUST00000123460:c.G585C:p.Q195H 4qE1 "Score=0.986863;Name=No.86634,chr4:146677141" NA chr4 145489259 CCAxAGA G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999997 154 0 63 14.897668 0.155556 0.02 -0.394639 38 7 1090 200 60 60 0 0 GG 17.147532 57 0 1638 0 KEEP NA Gm13238 NO AA_4 chr4 151404921 151404921 A T exonic Tas1r1 stopgain SNV NM_031867:c.T1569A:p.C523X exonic Tas1r1 stopgain SNV uc008vza.2:c.T1569A:p.C523X exonic ENSMUSG00000028950 stopgain SNV ENSMUST00000030792:c.T1569A:p.C523X 4qE2 NA NA chr4 151404921 TTCxCAG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 255 0 0 150.131899 0.585106 0.02 0.871131 39 55 1008 1516 60 60 0 0 AA 38.494274 128 0 3465 0 KEEP - Tas1r1 YES AA_4 chr4 151495390 151495390 A T intronic Espn NA NA intronic Espn NA NA intronic ENSMUSG00000028943 NA NA 4qE2 NA NA chr4 151495390 GGCxAAA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 71 0 0 33.779611 0.481481 0.02 -0.254277 14 13 383 357 60 60 0 0 AA 8.722235 29 0 798 0 KEEP - Espn YES AA_4 chr4 17923418 17923418 A T exonic Mmp16 nonsynonymous SNV NM_019724:c.A359T:p.Y120F exonic "Mmp16,mt3-mmp" nonsynonymous SNV uc008sbv.1:c.A359T:p.Y120F exonic ENSMUSG00000028226 nonsynonymous SNV ENSMUST00000029881:c.A359T:p.Y120F 4qA3 NA NA chr4 17923418 GCTxCGC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 138 0 0 70.189236 0.577778 0.02 -0.394522 19 26 491 711 60 60 0 0 AA 18.881624 63 0 1645 0 KEEP + Mmp16 YES AA_4 chr4 41552784 41552784 A C exonic Dnaic1 nonsynonymous SNV NM_175138:c.A740C:p.E247A exonic Dnaic1 nonsynonymous SNV uc008sjc.2:c.A740C:p.E247A exonic ENSMUSG00000061322 nonsynonymous SNV ENSMUST00000102963:c.A740C:p.E247A 4qA5 NA NA chr4 41552784 AAGxGAA A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 51 0 0 9.209296 0.25 0.02 -0.174906 15 5 396 117 60 60 0 0 AA 8.121304 27 0 752 0 KEEP + Dnaic1 NO AA_4 chr4 63809856 63809856 A T intergenic "Tnc(dist=101807),Pappa(dist=975352)" NA NA ncRNA_exonic AK033210 NA NA ncRNA_exonic ENSMUSG00000073821 NA NA 4qC1 NA NA chr4 63809856 TGGxAGC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 84 0 0 38.998526 0.484848 0.02 -0.289316 17 16 466 413 60 60 0 0 AA 11.1291 37 0 1031 0 KEEP NA Tnc YES AA_4 chr4 9771872 9771872 A T exonic Gdf6 nonsynonymous SNV NM_013526:c.A248T:p.H83L exonic Gdf6 nonsynonymous SNV uc008ryt.1:c.A248T:p.H83L exonic ENSMUSG00000051279 nonsynonymous SNV ENSMUST00000057613:c.A248T:p.H83L 4qA1 NA NA chr4 9771872 AACxTCA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 113 0 0 69.11189 0.457627 0.02 1.178011 32 27 826 739 60 60 0 0 AA 13.231451 44 0 1178 0 KEEP + Gdf6 YES AA_4 chr5 105653428 105653428 T G exonic Gbp10 nonsynonymous SNV NM_001039646:c.A484C:p.K162Q exonic Gbp10 nonsynonymous SNV uc008ykz.2:c.A484C:p.K162Q exonic ENSMUSG00000054588 nonsynonymous SNV ENSMUST00000100961:c.A484C:p.K162Q 5qE5 "Score=0.969352;Name=No.90938,chr5:105683326" NA chr5 105653428 TCTxTAT T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 428 2 22 319.77702 0.679012 0.02 4.157415 52 110 1440 3115 60 60 0 0 TT 57.749651 192 0 5353 0 KEEP - Gbp10 NO AA_4 chr5 116029661 116029661 C G exonic Gcn1l1 nonsynonymous SNV NM_172719:c.C678G:p.F226L exonic Gcn1l1 nonsynonymous SNV uc008zee.1:c.C678G:p.F226L exonic ENSMUSG00000041638 nonsynonymous SNV ENSMUST00000064454:c.C678G:p.F226L 5qF NA NA chr5 116029661 GTTxTAC C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 120 2 0 24.52658 0.294118 0.02 -0.298183 24 10 698 287 60 60 0 0 CC 21.358741 71 0 2036 0 KEEP + Gcn1l1 NO AA_4 chr5 125518393 125518393 T A intronic Ncor2 NA NA intronic Ncor2 NA NA intronic ENSMUSG00000029478 NA NA 5qG1.1 NA NA chr5 125518393 TCTxGGA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 37 0 0 23.526794 0.5625 0.02 -0.149044 7 9 192 240 60 60 0 0 TT 5.413341 18 0 488 0 KEEP - Ncor2 YES AA_4 chr5 130196639 130196639 A T intronic Sept14 NA NA intronic Sept14 NA NA intronic ENSMUSG00000034219 NA NA 5qG1.3 NA NA chr5 130196639 TTCxTCA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 211 0 0 148.716211 0.675325 0.02 1.02005 25 52 666 1450 60 60 0 0 AA 32.179824 107 0 2907 0 KEEP - Sept14 YES AA_4 chr5 138422768 138422768 T A UTR5 Azgp1 NA NA UTR5 Azgp1 NA NA UTR5 ENSMUSG00000037053 NA NA 5qG2 NA NA chr5 138422768 TTCxCCC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 154 0 0 46.51343 0.344828 0.02 1.088779 38 20 1063 532 60 60 0 0 TT 20.177427 73 1 1995 16 KEEP + Azgp1 YES AA_4 chr5 15030242 15030242 A G exonic Gm17019 synonymous SNV NM_182957:c.T555C:p.R185R exonic Gm17019 synonymous SNV uc008wmq.2:c.T555C:p.R185R exonic ENSMUSG00000091897 synonymous SNV ENSMUST00000167908:c.T555C:p.R185R 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030242 CAAxCGT A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 892 21 249 11.243217 0.047619 0.02 3.717916 140 7 3780 201 60 36 0 0 AA 178.733243 601 1 16351 18 KEEP - Gm17019 NO AA_4 chr5 151230778 151230778 T A exonic Fry nonsynonymous SNV NM_172887:c.T5171A:p.M1724K exonic Fry nonsynonymous SNV uc009atv.2:c.T5171A:p.M1724K exonic ENSMUSG00000056602 nonsynonymous SNV ENSMUST00000087204:c.T5171A:p.M1724K 5qG3 NA NA chr5 151230778 CCAxGCA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 98 1 0 25.820693 0.289474 0.02 -0.333179 27 11 721 305 60 60 0 0 TT 13.831599 46 0 1236 0 KEEP + Fry YES AA_4 chr5 15126151 15126151 C A exonic Speer4d nonsynonymous SNV NM_025759:c.C55A:p.Q19K exonic Speer4d nonsynonymous SNV uc008wmr.1:c.C55A:p.Q19K exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000095006:c.C55A:p.Q19K 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15126151 AAGxAGT C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1374 10 479 12.678206 0.041475 0.02 4.389164 208 9 5863 246 54 20 0 0 CC 255.949956 851 0 23895 0 KEEP + Speer4d NO AA_4 chr5 15128347 15128347 A T exonic Speer4d nonsynonymous SNV NM_025759:c.A401T:p.D134V exonic Speer4d nonsynonymous SNV uc008wmr.1:c.A401T:p.D134V exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000119100:c.A245T:p.D82V 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15128347 CTGxTTG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1474 36 371 21.561217 0.053004 0.02 5.373416 268 15 7113 398 60 40 0 0 AA 279.183965 929 0 25047 0 KEEP + Speer4d YES AA_4 chr5 152448104 152448104 T A exonic Rfc3 nonsynonymous SNV NM_027009:c.A562T:p.S188C exonic Rfc3 nonsynonymous SNV uc009aus.1:c.A562T:p.S188C exonic ENSMUSG00000033970 nonsynonymous SNV ENSMUST00000038131:c.A562T:p.S188C 5qG3 NA NA chr5 152448104 TGCxGGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260929 0.260965 0.999863 40 0 0 26.96947 0.625 0.02 -0.140288 6 10 165 268 60 60 0 0 TT 6.015981 20 0 560 0 KEEP - Rfc3 YES AA_4 chr5 21066527 21066527 A T exonic Lrrc17 nonsynonymous SNV NM_028977:c.A188T:p.H63L exonic Lrrc17 nonsynonymous SNV uc008wor.2:c.A188T:p.H63L exonic ENSMUSG00000039883 nonsynonymous SNV ENSMUST00000035651:c.A188T:p.H63L 5qA3 NA NA chr5 21066527 TCCxTGA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999998 83 0 0 70.464462 0.641026 0.02 -0.341962 14 25 370 696 60 60 0 0 AA 10.215718 34 0 903 0 KEEP + Lrrc17 YES AA_4 chr5 23886847 23886847 A T exonic Nos3 nonsynonymous SNV NM_008713:c.A2669T:p.E890V exonic Nos3 nonsynonymous SNV uc008wrd.2:c.A2669T:p.E890V exonic ENSMUSG00000028978 nonsynonymous SNV ENSMUST00000030834:c.A2669T:p.E890V 5qA3 NA NA chr5 23886847 TAGxGGC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 102 0 0 21.695747 0.27027 0.02 -0.324438 27 10 760 263 60 60 0 0 AA 14.71698 49 0 1335 0 KEEP + Nos3 YES AA_4 chr5 26402123 26402123 G A intronic Gm21671 NA NA intergenic "Speer4a(dist=36078),Gm10471(dist=6589)" NA NA intergenic "ENSMUSG00000073117(dist=17002),ENSMUSG00000073116(dist=6589)" NA NA 5qB1 "Score=0.958652;Name=No.90497,chr5:26366487" NA chr5 26402123 AGCxGGG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 401 4 21 16.595122 0.076923 0.02 2.189972 120 10 3079 271 60 60 0 0 GG 70.637566 235 0 6141 0 KEEP - Gm21671 NO AA_4 chr5 26586922 26586922 T G exonic Gm7361 nonsynonymous SNV NM_001281527:c.T376G:p.L126V intergenic "Gm10220(dist=138957),4930584F24Rik(dist=199688)" NA NA exonic ENSMUSG00000059645 nonsynonymous SNV ENSMUST00000074148:c.T376G:p.L126V 5qB1 "Score=0.959962;Name=No.90511,chr5:26434814" NA chr5 26586922 GACxTAG T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 284 0 92 41.774304 0.3125 0.02 1.107872 44 20 1226 495 60 60 0 0 TT 54.124275 180 0 4989 0 KEEP + Gm7361 NO AA_4 chr5 31167364 31167364 C T intronic Mapre3 NA NA intronic Mapre3 NA NA intronic ENSMUSG00000029166 NA NA 5qB1 NA NA chr5 31167364 CCTxCCA C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 119 1 0 36.160761 0.271186 0.02 1.071198 43 16 1225 435 60 60 0 0 CC 16.544854 55 0 1559 0 KEEP + Mapre3 NO AA_4 chr5 36338659 36338659 T A exonic Afap1 nonsynonymous SNV NM_027373:c.T1867A:p.C623S exonic Afap1 nonsynonymous SNV uc008xej.1:c.T1867A:p.C623S exonic ENSMUSG00000029094 nonsynonymous SNV ENSMUST00000064571:c.T1867A:p.C623S 5qB3 NA NA chr5 36338659 GAGxGCA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353723 0.353947 0.999366 40 0 0 51.018078 0.894737 0.02 -0.166504 2 17 49 457 60 60 0 0 TT 4.79968 16 0 389 0 KEEP + Afap1 YES AA_4 chr5 39141562 39141562 T C exonic Clnk synonymous SNV NM_013748:c.A591G:p.E197E exonic Clnk synonymous SNV uc008xgv.1:c.A591G:p.E197E exonic ENSMUSG00000039315 synonymous SNV ENSMUST00000041030:c.A591G:p.E197E 5qB3 NA NA chr5 39141562 GACxTCT T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 202 0 0 141.41853 0.60241 0.02 1.065676 33 50 921 1418 60 60 0 0 TT 27.664648 92 0 2575 0 KEEP - Clnk NO AA_4 chr5 4197375 4197375 A T exonic Gm9897 nonsynonymous SNV NM_001042670:c.A1015T:p.S339C exonic Gm9897 nonsynonymous SNV uc008wif.1:c.A1015T:p.S339C exonic ENSMUSG00000053178 nonsynonymous SNV ENSMUST00000065462:c.A1009T:p.S337C 5qA1 "Score=0.953952;Name=No.90045,chr5:3889891" NA chr5 4197375 TCCxGCA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 78 0 11 76.465128 0.75 0.02 -0.315572 9 27 251 724 60 60 0 0 AA 9.925222 33 0 915 0 KEEP + Gm9897 YES AA_4 chr5 44576233 44576233 G A exonic Tapt1 synonymous SNV NM_173764:c.C1119T:p.A373A exonic Tapt1 synonymous SNV uc008xin.1:c.C1119T:p.A373A exonic ENSMUSG00000046985 synonymous SNV ENSMUST00000055128:c.C1119T:p.A373A 5qB3 NA NA chr5 44576233 GCTxGCT G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 100 0 0 25.131414 0.255814 0.02 -0.377084 32 11 908 305 60 60 0 0 GG 12.633355 42 0 1190 0 KEEP - Tapt1 NO AA_4 chr5 67489051 67489051 T A exonic Phox2b nonsynonymous SNV NM_008888:c.A293T:p.Q98L exonic Phox2b nonsynonymous SNV uc008xpm.1:c.A293T:p.Q98L exonic ENSMUSG00000012520 nonsynonymous SNV ENSMUST00000012664:c.A293T:p.Q98L 5qC3.1 NA NA chr5 67489051 CGCxGCT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457715 0.457757 0.999909 58 0 0 13.965098 0.272727 0.02 -0.192924 16 6 451 167 60 60 0 0 TT 7.218509 24 0 662 0 KEEP - Phox2b YES AA_4 chr5 8443712 8443712 A C exonic Slc25a40 nonsynonymous SNV NM_178766:c.A561C:p.R187S exonic Slc25a40 nonsynonymous SNV uc008wkj.1:c.A6C:p.R2S exonic ENSMUSG00000054099 nonsynonymous SNV ENSMUST00000170496:c.A561C:p.R187S 5qA1 NA NA chr5 8443712 GAGxGTG A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322803 0.322807 0.999988 50 0 0 15.41173 0.388889 0.02 -0.15779 11 7 305 173 60 60 0 0 AA 8.121774 27 0 760 0 KEEP + Slc25a40 NO AA_4 chr6 112337907 112337907 C G intronic Ssu2 NA NA intronic D630042P16Rik NA NA intronic ENSMUSG00000034387 NA NA 6qE3 NA NA chr6 112337907 CAGxCAG C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 264 0 0 138.435109 0.485714 0.02 2.657512 54 51 1521 1457 60 60 0 0 CC 38.185636 127 0 3476 0 KEEP - Ssu2 NO AA_4 chr6 113010067 113010067 A T exonic Thumpd3 nonsynonymous SNV NM_008188:c.A932T:p.Y311F exonic Thumpd3 nonsynonymous SNV uc009dek.1:c.A932T:p.Y311F exonic ENSMUSG00000030264 nonsynonymous SNV ENSMUST00000032398:c.A932T:p.Y311F 6qE3 NA NA chr6 113010067 CCTxTGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 118 0 0 58.305607 0.410714 0.02 1.204256 33 23 855 638 60 60 0 0 AA 12.930111 43 0 1143 0 KEEP + Thumpd3 YES AA_4 chr6 116204106 116204106 A T splicing Fam21(NM_026585:exon24:c.2467-2A>T) NA NA splicing "D6Wsu116e(uc009djs.2:exon24:c.2467-2A>T,uc009djt.1:exon23:c.2467-2A>T)" NA NA splicing "ENSMUSG00000024104(ENSMUST00000171453:exon24:c.2467-2A>T,ENSMUST00000036759:exon24:c.2467-2A>T)" NA NA 6qE3 NA NA chr6 116204106 CCCxGGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 73 0 0 23.478962 0.285714 0.02 -0.306892 25 10 680 278 60 60 0 0 AA 8.419601 28 0 763 0 KEEP + Fam21 YES AA_4 chr6 118334227 118334227 C T intronic Bms1 NA NA intronic Bms1 NA NA intronic ENSMUSG00000030138 NA NA 6qF1 NA NA chr6 118334227 ATGxAAA C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353723 0.353947 0.999366 44 0 0 21.680089 0.473684 0.02 -0.166576 10 9 283 231 60 60 0 0 CC 5.113794 17 0 481 0 KEEP - Bms1 NO AA_4 chr6 127428055 127428055 A C exonic Parp11 nonsynonymous SNV NM_181402:c.A435C:p.E145D exonic Parp11 nonsynonymous SNV uc009dvz.1:c.A186C:p.E62D exonic ENSMUSG00000037997 nonsynonymous SNV ENSMUST00000112191:c.A186C:p.E62D 6qF3 NA NA chr6 127428055 TGAxGTG A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 166 0 0 86.941391 0.4625 0.02 0.993937 43 37 1192 933 60 60 0 0 AA 20.752783 69 0 1915 0 KEEP + Parp11 NO AA_4 chr6 129378879 129378879 T A exonic Clec1a nonsynonymous SNV NM_175526:c.A806T:p.Q269L exonic Clec1a nonsynonymous SNV uc009eft.2:c.A806T:p.Q269L exonic ENSMUSG00000033082 nonsynonymous SNV ENSMUST00000037481:c.A806T:p.Q269L 6qF3 NA NA chr6 129378879 TACxGGA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 167 0 0 84.552099 0.596154 0.02 1.239344 21 31 573 850 60 60 0 0 TT 26.459441 88 0 2427 0 KEEP - Clec1a YES AA_4 chr6 13120135 13120135 T A intergenic "Tmem106b(dist=80866),Vwde(dist=15475)" NA NA intergenic "Tmem106b(dist=80866),Vwde(dist=15475)" NA NA intergenic "ENSMUSG00000077643(dist=58708),ENSMUSG00000079679(dist=15478)" NA NA 6qA1 NA NA chr6 13120135 ACCxGGT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.981955 0.981955 0.999999 127 0 0 87.189129 0.561404 0.02 1.195437 25 32 670 889 60 60 0 0 TT 14.437338 48 0 1331 0 KEEP NA Tmem106b YES AA_4 chr6 132388961 132388961 C T intergenic "Gm4736(dist=74808),Prh1(dist=130899)" NA NA ncRNA_exonic BC069935 NA NA intergenic "ENSMUSG00000030143(dist=74809),ENSMUSG00000064832(dist=126029)" NA NA 6qG1 "Score=0.924401;Name=No.94157,chr6:132258895" NA chr6 132388961 GGTxCCT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 956 20 34 19.809068 0.064356 0.02 4.494826 189 13 5281 345 60 60 0 0 CC 171.477995 572 0 15478 0 KEEP NA Gm4736 NO AA_4 chr6 132389177 132389177 C T intergenic "Gm4736(dist=75024),Prh1(dist=130683)" NA NA ncRNA_exonic BC069935 NA NA intergenic "ENSMUSG00000030143(dist=75025),ENSMUSG00000064832(dist=125813)" NA NA 6qG1 "Score=0.924401;Name=No.94157,chr6:132258895" NA chr6 132389177 GCTxCCT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 475 10 31 9.770067 0.069307 0.02 2.0204 94 7 2618 173 60 29 2 0 CC 89.764975 299 0 8226 0 KEEP NA Gm4736 NO AA_4 chr6 132389287 132389287 C T intergenic "Gm4736(dist=75134),Prh1(dist=130573)" NA NA ncRNA_exonic BC069935 NA NA intergenic "ENSMUSG00000030143(dist=75135),ENSMUSG00000064832(dist=125703)" NA NA 6qG1 "Score=0.924401;Name=No.94157,chr6:132258895" NA chr6 132389287 GGTxCCT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 271 0 34 46.617039 0.542857 0.02 0.95061 16 19 442 481 29 60 0 0 CC 55.838867 186 0 5070 0 KEEP NA Gm4736 NO AA_4 chr6 134373885 134373885 A G exonic Bcl2l14 nonsynonymous SNV NM_025778:c.A250G:p.S84G exonic Bcl2l14 nonsynonymous SNV uc009eki.1:c.A250G:p.S84G exonic ENSMUSG00000030200 nonsynonymous SNV ENSMUST00000111960:c.A250G:p.S84G 6qG1 NA NA chr6 134373885 ATCxGCT A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 45 0 0 25.550699 0.458333 0.02 -0.210364 13 11 355 275 60 60 0 0 AA 5.713496 19 0 522 0 KEEP + Bcl2l14 NO AA_4 chr6 142321464 142321464 G A exonic Recql nonsynonymous SNV NM_001204906:c.C572T:p.P191L exonic Recql nonsynonymous SNV uc009epd.1:c.C572T:p.P191L exonic ENSMUSG00000030243 nonsynonymous SNV ENSMUST00000032370:c.C572T:p.P191L 6qG2 NA NA chr6 142321464 TCTxGAG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 175 0 0 78.023982 0.397436 0.02 1.011238 47 31 1321 860 60 60 0 0 GG 24.064014 80 0 2247 0 KEEP - Recql NO AA_4 chr6 38078577 38078577 T G splicing D630045J12Rik(NM_194061:exon21:c.5569-2A>C) NA NA splicing "D630045J12Rik(uc009bjt.2:exon21:c.5569-2A>C),mKIAA1549(uc009bjr.2:exon7:c.817-2A>C)" NA NA splicing "ENSMUSG00000063455(ENSMUST00000117556:exon20:c.4732-2A>C,ENSMUST00000169256:exon21:c.5569-2A>C)" NA NA 6qB1 NA NA chr6 38078577 GTCxGAA T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 39 0 0 26.347977 0.5 0.02 -0.175363 10 10 271 276 60 60 0 0 TT 3.900761 13 0 345 0 KEEP - D630045J12Rik NO AA_4 chr6 38286702 38286702 T G intronic Zc3hav1 NA NA intronic Zc3hav1 NA NA intronic ENSMUSG00000029826 NA NA 6qB1 NA NA chr6 38286702 ACCxGGA T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 75 0 0 30.869353 0.6 0.02 -0.183987 8 12 217 310 60 60 0 0 TT 11.411926 38 0 1004 0 KEEP - Zc3hav1 NO AA_4 chr6 40358312 40358312 T G exonic E330009J07Rik nonsynonymous SNV NM_175528:c.A1128C:p.E376D exonic E330009J07Rik nonsynonymous SNV uc009bmo.1:c.A1128C:p.E376D exonic ENSMUSG00000037172 nonsynonymous SNV ENSMUST00000039008:c.A1128C:p.E376D 6qB1 NA NA chr6 40358312 AACxTCC T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760877 0.760887 0.999988 70 2 0 46.403741 0.545455 0.02 -0.289323 15 18 413 477 60 60 0 0 TT 7.819816 26 0 715 0 KEEP - E330009J07Rik NO AA_4 chr6 42543669 42543669 T A exonic Fam115e nonsynonymous SNV NM_203396:c.A1147T:p.I383F exonic Fam115e nonsynonymous SNV uc009brm.1:c.A1147T:p.I383F exonic ENSMUSG00000018656 nonsynonymous SNV ENSMUST00000069023:c.A1147T:p.I383F 6qB2.1 NA NA chr6 42543669 CGAxGTT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.87767 0.877708 0.999957 72 0 0 56.597116 0.525 0.02 -0.350717 19 21 499 586 60 60 0 0 TT 7.818963 26 0 700 0 KEEP - Fam115e YES AA_4 chr6 48423641 48423641 T C intronic Sspo NA NA intronic Sspo NA NA intronic ENSMUSG00000029797 NA NA 6qB2.3 NA NA chr6 48423641 TACxTGA T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 184 0 0 108.299887 0.534247 0.02 1.153374 34 39 948 1116 60 60 0 0 TT 24.03697 80 0 2211 0 KEEP + Sspo NO AA_4 chr6 48597511 48597511 A T exonic Gimap8 nonsynonymous SNV NM_212486:c.A77T:p.Q26L exonic "Gimap8,IAN9" nonsynonymous SNV uc009bvg.1:c.A77T:p.Q26L exonic ENSMUSG00000064262 nonsynonymous SNV ENSMUST00000167044:c.A77T:p.Q26L 6qB2.3 NA NA chr6 48597511 GACxGGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 38 0 0 11.822365 0.357143 0.02 -0.122755 9 5 247 134 60 60 0 0 AA 5.713163 19 0 515 0 KEEP + Gimap8 YES AA_4 chr6 67716256 67716256 T G intergenic "4930515G16Rik(dist=200563),Rprl1(dist=1560675)" NA NA ncRNA_intronic abParts NA NA exonic ENSMUSG00000076505 nonsynonymous SNV ENSMUST00000103306:c.A136C:p.S46R 6qC1 NA NA chr6 67716256 GACxTGA T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 303 2 4 111.146477 0.433628 0.02 2.596688 64 49 1776 1214 60 60 0 0 TT 43.314549 144 0 4034 0 KEEP NA 4930515G16Rik NO AA_4 chr6 70167019 70167019 T G intergenic "Rprl1(dist=889851),Rpia(dist=548695)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076583 synonymous SNV ENSMUST00000103384:c.A198C:p.P66P 6qC1 "Score=0.970312;Name=No.93926,chr6:70311569" NA chr6 70167019 TCCxGGT T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 135 0 0 52.851996 0.478261 0.02 -0.403249 24 22 667 562 60 60 0 0 TT 22.252644 74 0 2035 0 KEEP NA Rprl1 NO AA_4 chr6 73034789 73034789 T A exonic Dnah6 nonsynonymous SNV NM_001164669:c.A8306T:p.E2769V exonic Dnahc6 nonsynonymous SNV uc009cji.1:c.A3626T:p.E1209V exonic ENSMUSG00000052861 nonsynonymous SNV ENSMUST00000114038:c.A3656T:p.E1219V 6qC1 NA NA chr6 73034789 TCCxCCA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.610258 0.612407 0.99649 50 4 0 21.21003 0.346154 0.02 -0.236741 17 9 465 242 60 60 0 0 TT 4.511725 15 0 417 0 KEEP - Dnah6 YES AA_4 chr6 89304851 89304851 T A exonic Plxna1 nonsynonymous SNV NM_008881:c.A1370T:p.K457M exonic Plxna1 nonsynonymous SNV uc009cwg.2:c.A1370T:p.K457M exonic ENSMUSG00000030084 nonsynonymous SNV ENSMUST00000049845:c.A1370T:p.K457M 6qD1 NA NA chr6 89304851 ACCxTGC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 78 0 0 43.971075 0.5 0.02 -0.298116 17 17 466 461 60 60 0 0 TT 9.022514 30 0 828 0 KEEP - Plxna1 YES AA_4 chr6 90079223 90079223 C A exonic Vmn1r51 synonymous SNV NM_011683:c.C126A:p.I42I exonic Vmn1r51 synonymous SNV uc009cwv.1:c.C126A:p.I42I exonic ENSMUSG00000062818 synonymous SNV ENSMUST00000072859:c.C126A:p.I42I 6qD1 NA NA chr6 90079223 CATxTTT C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 308 2 0 9.567933 0.054264 0.02 1.868755 122 7 3507 180 60 60 0 0 CC 43.608119 145 0 4104 0 KEEP + Vmn1r51 NO AA_4 chr7 110700407 110700407 A T exonic Olfr613 nonsynonymous SNV NM_147100:c.A107T:p.Y36F exonic Olfr613 nonsynonymous SNV uc009ity.1:c.A107T:p.Y36F exonic ENSMUSG00000078624 nonsynonymous SNV ENSMUST00000106888:c.A107T:p.Y36F 7qE3 NA NA chr7 110700407 TGTxCCT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 170 0 0 38.567951 0.242857 0.02 1.07336 53 17 1349 473 60 60 0 0 AA 21.316332 71 0 1874 0 KEEP + Olfr613 YES AA_4 chr7 111338561 111338561 C T exonic Olfr649 synonymous SNV NM_147055:c.G159A:p.V53V exonic Olfr649 synonymous SNV uc009ivo.1:c.G159A:p.V53V exonic ENSMUSG00000044899 synonymous SNV ENSMUST00000060440:c.G159A:p.V53V 7qE3 NA NA chr7 111338561 TTCxACT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 61 2 0 60.075659 0.807692 0.02 -0.227958 5 21 146 556 60 60 0 0 CC 9.32499 31 0 877 0 KEEP - Olfr649 NO AA_4 chr7 112907467 112907467 T A exonic Dchs1 nonsynonymous SNV NM_001162943:c.A5671T:p.T1891S exonic Dchs1 nonsynonymous SNV uc009izh.2:c.A5671T:p.T1891S exonic ENSMUSG00000036862 nonsynonymous SNV ENSMUST00000078482:c.A5671T:p.T1891S 7qE3 NA NA chr7 112907467 CTGxACC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 93 0 0 9.898433 0.151515 0.02 -0.297715 28 5 701 136 60 60 0 0 TT 14.397218 48 0 1237 0 KEEP - Dchs1 YES AA_4 chr7 121202525 121202525 T A exonic Rras2 nonsynonymous SNV NM_025846:c.A215T:p.Q72L exonic Rras2 nonsynonymous SNV uc009jhw.2:c.A215T:p.Q72L exonic ENSMUSG00000055723 nonsynonymous SNV ENSMUST00000069449:c.A215T:p.Q72L 7qF1 NA NA chr7 121202525 TCTxGTC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 205 2 0 92.42576 0.618182 0.02 1.179761 21 34 562 921 60 60 0 0 TT 33.9488 113 0 3044 0 KEEP - Rras2 YES AA_4 chr7 12671958 12671958 C T intergenic "Vmn1r77(dist=44390),Vmn1r78(dist=65855)" NA NA intergenic "Vmn1r77(dist=44390),Vmn1r78(dist=65855)" NA NA ncRNA_exonic ENSMUSG00000066807 NA NA 7qA1 "Score=0.962938;Name=No.94191,chr6:3022041" NA chr7 12671958 GTCxCAT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 72 0 0 9.069433 0.15625 0.02 -0.280605 27 5 777 127 60 60 0 0 CC 8.720897 29 0 806 0 KEEP NA Vmn1r77 NO AA_4 chr7 127663598 127663598 A T exonic Abca16 nonsynonymous SNV NM_001278943:c.A1997T:p.H666L exonic Abca16 nonsynonymous SNV uc012fsz.1:c.A1727T:p.H576L exonic ENSMUSG00000051900 nonsynonymous SNV ENSMUST00000120490:c.A3050T:p.H1017L 7qF2 NA NA chr7 127663598 ACCxCTC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 83 0 0 22.738215 0.344828 0.02 -0.253858 19 10 510 261 60 60 0 0 AA 12.927447 43 0 1151 0 KEEP + Abca16 YES AA_4 chr7 128910928 128910928 T A exonic Scnn1g nonsynonymous SNV NM_011326:c.T1833A:p.F611L exonic Scnn1g nonsynonymous SNV uc009jnv.1:c.T1833A:p.F611L exonic ENSMUSG00000000216 nonsynonymous SNV ENSMUST00000000221:c.T1833A:p.F611L 7qF2 NA NA chr7 128910928 TTTxACC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 140 2 0 60.595536 0.5 0.02 -0.420775 24 24 629 636 60 60 0 0 TT 22.247613 74 0 1967 0 KEEP + Scnn1g YES AA_4 chr7 13186173 13186173 T G exonic Vmn2r53 nonsynonymous SNV NM_001104644:c.A908C:p.Q303P exonic Vmn2r53 nonsynonymous SNV uc009ved.1:c.A908C:p.Q303P exonic ENSMUSG00000091797 nonsynonymous SNV ENSMUST00000170412:c.A908C:p.Q303P 7qA1 "Score=0.919701;Name=No.98184,chr7:13300535" NA chr7 13186173 AACxGGA T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 228 1 0 123.852411 0.620253 0.02 0.986296 30 49 813 1234 60 60 0 0 TT 33.970887 113 0 3081 0 KEEP - Vmn2r53 NO AA_4 chr7 132476070 132476070 A T ncRNA_exonic 4933440M02Rik NA NA ncRNA_exonic "AK017137,AK031079" NA NA UTR5 ENSMUSG00000045928 NA NA 7qF3 NA NA chr7 132476070 GGCxTGC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 73 1 0 54.099822 0.633333 0.02 -0.263051 11 19 288 536 60 60 0 0 AA 12.029602 40 0 1084 0 KEEP - 4933440M02Rik YES AA_4 chr7 134000864 134000864 T A intronic Ino80e NA NA intronic Ino80e NA NA intronic ENSMUSG00000030689 NA NA 7qF3 NA NA chr7 134000864 AGGxGGG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.320996 0.322807 0.994391 33 0 0 30.32138 0.611111 0.02 -0.157825 7 11 185 303 60 60 0 0 TT 3.909437 13 0 350 0 KEEP - Ino80e YES AA_4 chr7 13872057 13872057 C A intronic Lig1 NA NA intronic Lig1 NA NA intronic ENSMUSG00000056394 NA NA 7qA1 NA NA chr7 13872057 TCCxTTC C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 173 0 0 113.340472 0.719298 0.02 1.097589 16 41 453 1085 60 60 0 0 CC 26.470685 88 0 2505 0 KEEP + Lig1 NO AA_4 chr7 147094894 147094894 C T exonic Kndc1 nonsynonymous SNV NM_177261:c.C565T:p.R189C exonic Kndc1 nonsynonymous SNV uc009kgc.1:c.C565T:p.R189C exonic ENSMUSG00000066129 nonsynonymous SNV ENSMUST00000053445:c.C565T:p.R189C 7qF4 NA NA chr7 147094894 TGCxGCA C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162114 0.162467 0.997832 36 0 0 22.007766 0.615385 0.02 -0.113235 5 8 109 219 60 60 0 0 CC 4.803898 16 0 384 0 KEEP + Kndc1 NO AA_4 chr7 147678537 147678537 C T upstream Olfr535 NA NA upstream Olfr535 NA NA UTR5 ENSMUSG00000063230 NA NA 7qF4 NA NA chr7 147678537 TTTxCAT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 196 0 0 109.795005 0.661017 0.02 1.17922 20 39 554 1075 60 60 0 0 CC 33.68628 112 0 3182 0 KEEP + Olfr535 NO AA_4 chr7 148108956 148108956 A T exonic Nlrp6 nonsynonymous SNV NM_133946:c.A985T:p.T329S exonic Nlrp6 nonsynonymous SNV uc009kiu.1:c.A985T:p.T329S exonic ENSMUSG00000038745 nonsynonymous SNV ENSMUST00000048331:c.A985T:p.T329S 7qF5 NA NA chr7 148108956 GCTxCAG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999999 54 0 0 28.430078 0.714286 0.02 -0.122748 4 10 104 273 60 60 0 0 AA 10.524498 35 0 933 0 KEEP + Nlrp6 YES AA_4 chr7 148824097 148824097 A T exonic Muc6 unknown UNKNOWN exonic Muc6 synonymous SNV uc009klu.2:c.T5970A:p.T1990T exonic ENSMUSG00000048191 synonymous SNV ENSMUST00000062451:c.T6351A:p.T2117T 7qF5 NA NA chr7 148824097 CACxGTG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 650 4 293 29.546343 0.108108 0.02 1.995317 132 16 3499 439 36 36 0 0 AA 108.700333 365 1 9942 9 KEEP - Muc6 YES AA_4 chr7 149050792 149050792 T A exonic Muc5b nonsynonymous SNV NM_028801:c.T11569A:p.Y3857N exonic Muc5b nonsynonymous SNV uc009kmc.1:c.T11569A:p.Y3857N exonic ENSMUSG00000066108 nonsynonymous SNV ENSMUST00000165147:c.T11569A:p.Y3857N 7qF5 NA NA chr7 149050792 CAGxATT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 103 2 0 76.38313 0.666667 0.02 -0.367661 14 28 352 747 60 60 0 0 TT 14.127226 47 0 1230 0 KEEP + Muc5b YES AA_4 chr7 151706944 151706944 T A exonic Ppfia1 nonsynonymous SNV NM_001033319:c.A287T:p.E96V exonic Ppfia1 nonsynonymous SNV uc012fxz.1:c.A287T:p.E96V exonic ENSMUSG00000037519 nonsynonymous SNV ENSMUST00000168134:c.A287T:p.E96V 7qF5 NA NA chr7 151706944 AGTxCCT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 140 3 0 89.134614 0.723404 0.02 -0.411828 13 34 355 850 60 60 0 0 TT 23.160012 77 0 2135 0 KEEP - Ppfia1 YES AA_4 chr7 19399961 19399961 A T exonic Psg17 synonymous SNV NM_007677:c.T1233A:p.T411T exonic Psg17 synonymous SNV uc009fjs.1:c.T1233A:p.T411T exonic ENSMUSG00000004540 synonymous SNV ENSMUST00000004655:c.T1233A:p.T411T 7qA3 NA NA chr7 19399961 CCCxGTG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 419 0 0 34.752642 0.168224 0.02 2.160043 89 18 2463 472 60 60 0 0 AA 71.883822 239 0 6629 0 KEEP - Psg17 YES AA_4 chr7 19982712 19982712 A T intronic Klc3 NA NA intronic Klc3 NA NA intronic ENSMUSG00000040714 NA NA 7qA3 NA NA chr7 19982712 GTTxCCC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 176 1 0 22.487499 0.174603 0.02 1.125509 52 11 1319 299 60 60 0 0 AA 25.828456 86 0 2231 0 KEEP - Klc3 YES AA_4 chr7 26187201 26187201 A T exonic Cxcl17 nonsynonymous SNV NM_153576:c.T229A:p.C77S exonic Cxcl17 nonsynonymous SNV uc009fst.1:c.T229A:p.C77S exonic ENSMUSG00000060188 nonsynonymous SNV ENSMUST00000074040:c.T229A:p.C77S 7qA3 NA NA chr7 26187201 CACxGGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 104 0 0 63.425466 0.758621 0.02 -0.254277 7 22 191 599 60 60 0 0 AA 15.640711 52 0 1443 0 KEEP - Cxcl17 YES AA_4 chr7 28928971 28928971 A C exonic 9530053A07Rik nonsynonymous SNV NM_001164655:c.A2264C:p.D755A exonic 9530053A07Rik nonsynonymous SNV uc009fxx.2:c.A2264C:p.D755A exonic ENSMUSG00000078776 nonsynonymous SNV ENSMUST00000150948:c.A2264C:p.D755A 7qA3 NA NA chr7 28928971 GTGxTGA A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 81 0 0 23.332961 0.25641 0.02 -0.341902 29 10 755 282 60 60 0 0 AA 8.721791 29 0 790 0 KEEP + 9530053A07Rik NO AA_4 chr7 28928974 28928974 A G exonic 9530053A07Rik nonsynonymous SNV NM_001164655:c.A2267G:p.E756G exonic 9530053A07Rik nonsynonymous SNV uc009fxx.2:c.A2267G:p.E756G exonic ENSMUSG00000078776 nonsynonymous SNV ENSMUST00000150948:c.A2267G:p.E756G 7qA3 NA NA chr7 28928974 ATGxGGG A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 82 0 0 23.00524 0.25 0.02 -0.350739 30 10 826 280 60 60 0 0 AA 8.723407 29 0 817 0 KEEP + 9530053A07Rik NO AA_4 chr7 31034765 31034765 T C intronic Wdr62 NA NA intronic Wdr62 NA NA intronic ENSMUSG00000037020 NA NA 7qB1 NA NA chr7 31034765 AGTxTTG T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 82 0 0 20.311628 0.32 0.02 -0.219228 17 8 469 233 60 60 0 0 TT 12.632678 42 0 1164 0 KEEP - Wdr62 NO AA_4 chr7 31243425 31243425 G C upstream Kirrel2 NA NA UTR5 Nphs1 NA NA UTR5 ENSMUSG00000006649 NA NA 7qB1 NA NA chr7 31243425 GAGxCTG G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043759 0.043787 0.999366 29 0 0 10.931025 0.571429 0.02 -0.061385 3 4 86 111 60 60 0 0 GG 5.113923 17 0 483 0 KEEP - Kirrel2 NO AA_4 chr7 31362104 31362104 A C exonic Kmt2b nonsynonymous SNV NM_029274:c.T5161G:p.F1721V exonic Wbp7 nonsynonymous SNV uc009gff.1:c.T4600G:p.F1534V exonic ENSMUSG00000006307 nonsynonymous SNV ENSMUST00000006470:c.T5161G:p.F1721V 7qB1 NA NA chr7 31362104 TGAxGTT A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 78 0 0 34.660046 0.375 0.02 -0.350657 25 15 680 390 60 60 0 0 AA 10.225595 34 0 944 0 KEEP - Kmt2b NO AA_4 chr7 31845547 31845547 C T intronic Lgi4 NA NA intronic Lgi4 NA NA intronic ENSMUSG00000036560 NA NA 7qB1 NA NA chr7 31845547 TCAxTAA C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 153 4 0 39.017891 0.295082 0.02 1.062532 43 18 1171 465 60 60 0 0 CC 20.111405 67 0 1764 0 KEEP + Lgi4 NO AA_4 chr7 36270293 36270293 A T intergenic "Slc7a9(dist=19240),Tdrd12(dist=8336)" NA NA intergenic "Slc7a9(dist=19240),Tdrd12(dist=8336)" NA NA exonic ENSMUSG00000030491 nonsynonymous SNV ENSMUST00000108043:c.T2213A:p.L738Q 7qB2 NA NA chr7 36270293 TCCxGGA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 81 2 0 25.190349 0.416667 0.02 -0.210445 14 10 386 275 60 60 0 0 AA 13.234458 44 0 1224 0 KEEP NA Slc7a9 YES AA_4 chr7 39233034 39233034 T A intergenic "Pop4(dist=176667),Gm5591(dist=70124)" NA NA intergenic "AK005849(dist=4800),Gm5591(dist=70124)" NA NA intergenic "ENSMUSG00000070238(dist=67560),ENSMUSG00000060565(dist=70124)" NA NA 7qB2 "Score=0.968532;Name=No.101102,chr7:46605908" NA chr7 39233034 AGCxGGA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 617 4 120 11.644799 0.044444 0.02 3.348278 172 8 4712 220 57 54 0 0 TT 98.333727 327 0 8984 0 KEEP NA Pop4 YES AA_4 chr7 4292840 4292840 T A intronic Ncr1 NA NA intronic Ncr1 NA NA intronic ENSMUSG00000062524 NA NA 7qA1 NA NA chr7 4292840 TTCxGCA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 88 0 0 65.340764 0.954545 0.02 -0.254273 1 21 27 571 60 60 0 0 TT 14.737924 49 0 1355 0 KEEP + Ncr1 YES AA_4 chr7 48446888 48446888 G A intergenic "Gm4884(dist=146216),Gm5592(dist=92809)" NA NA intergenic "Gm4884(dist=146216),Gm5592(dist=92809)" NA NA intergenic "ENSMUSG00000078737(dist=33222),ENSMUSG00000049062(dist=55503)" NA NA 7qB3 "Score=0.965278;Name=No.83501,chr3:54285345" NA chr7 48446888 TATxGAA G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 218 0 2 7.230702 0.066667 0.02 0.745619 70 5 2004 128 60 29 0 0 GG 37.302209 124 0 3540 0 KEEP NA Gm4884 NO AA_4 chr7 48446953 48446953 C T intergenic "Gm4884(dist=146281),Gm5592(dist=92744)" NA NA intergenic "Gm4884(dist=146281),Gm5592(dist=92744)" NA NA intergenic "ENSMUSG00000078737(dist=33287),ENSMUSG00000049062(dist=55438)" NA NA 7qB3 "Score=0.965278;Name=No.83501,chr3:54285345" NA chr7 48446953 CAGxTGA C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 205 1 4 8.018014 0.079365 0.02 0.93085 58 5 1624 132 60 29 0 0 CC 31.700049 115 1 3210 27 KEEP NA Gm4884 NO AA_4 chr7 49092312 49092312 T G exonic Vmn2r58 nonsynonymous SNV NM_001105055:c.A2528C:p.N843T exonic Vmn2r58 nonsynonymous SNV uc012fit.1:c.A2528C:p.N843T exonic ENSMUSG00000090383 nonsynonymous SNV ENSMUST00000171671:c.A2528C:p.N843T 7qB3 "Score=0.918859;Name=No.101197,chr7:48988564" NA chr7 49092312 GAGxTTT T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 139 0 0 68.452982 0.543478 0.02 -0.403321 21 25 553 703 60 60 0 0 TT 21.941066 73 0 1939 0 KEEP - Vmn2r58 NO AA_4 chr7 51837842 51837842 A T exonic Napsa nonsynonymous SNV NM_008437:c.A584T:p.Q195L exonic Napsa nonsynonymous SNV uc009gqe.1:c.A584T:p.Q195L exonic ENSMUSG00000002204 nonsynonymous SNV ENSMUST00000002274:c.A584T:p.Q195L 7qB4 NA NA chr7 51837842 TTCxGCC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.550313 0.552887 0.995343 39 0 0 46.495073 0.68 0.02 -0.219199 8 17 224 452 60 60 0 0 AA 4.211179 14 0 392 0 KEEP + Napsa YES AA_4 chr7 51850662 51850662 G A exonic Kcnc3 synonymous SNV NM_008422:c.G1005A:p.P335P exonic Kcnc3 synonymous SNV uc009gqg.1:c.G1005A:p.P335P exonic ENSMUSG00000062785 synonymous SNV ENSMUST00000071062:c.G1005A:p.P335P 7qB4 NA NA chr7 51850662 CCCxGAG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 120 0 0 40.144911 0.326923 0.02 1.239521 35 17 874 463 60 60 0 0 GG 17.729856 59 0 1496 0 KEEP + Kcnc3 NO AA_4 chr7 52543227 52543227 G A exonic 1700039E15Rik nonsynonymous SNV NM_001033176:c.G810A:p.M270I exonic 1700039E15Rik nonsynonymous SNV uc009gum.1:c.G810A:p.M270I exonic ENSMUSG00000070568 nonsynonymous SNV ENSMUST00000085364:c.G810A:p.M270I 7qB4 NA NA chr7 52543227 CATxGTG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 95 0 0 9.948159 0.125 0.02 -0.350466 35 5 957 141 60 60 0 0 GG 12.333119 41 0 1160 0 KEEP + 1700039E15Rik NO AA_4 chr7 53089791 53089791 T A exonic Grin2d nonsynonymous SNV NM_008172:c.A2492T:p.E831V exonic Grin2d nonsynonymous SNV uc009gxm.1:c.A2492T:p.E831V exonic ENSMUSG00000002771 nonsynonymous SNV ENSMUST00000002848:c.A2492T:p.E831V 7qB4 NA NA chr7 53089791 ACCxCGA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 122 0 0 16.827338 0.210526 0.02 -0.333208 30 8 834 215 60 60 0 0 TT 18.928304 63 0 1737 0 KEEP - Grin2d YES AA_4 chr7 53997842 53997842 G C exonic Saa1 nonsynonymous SNV NM_009117:c.C51G:p.C17W exonic Saa1 nonsynonymous SNV uc009gyz.1:c.C51G:p.C17W exonic ENSMUSG00000074115 nonsynonymous SNV ENSMUST00000128088:c.C51G:p.C17W 7qB4 "Score=0.967967;Name=No.101338,chr7:54006945" NA chr7 53997842 ATGxCAG G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999999 73 2 5 14.516917 0.315789 0.02 -0.166609 13 6 363 168 60 60 0 0 GG 11.730873 39 0 1089 0 KEEP - Saa1 NO AA_4 chr7 55703363 55703363 A T exonic Mrgprb1 nonsynonymous SNV NM_205810:c.T170A:p.L57Q exonic Mrgprb1 nonsynonymous SNV uc009hap.1:c.T170A:p.L57Q exonic ENSMUSG00000070547 nonsynonymous SNV ENSMUST00000094384:c.T170A:p.L57Q 7qB4 NA NA chr7 55703363 ACCxGCC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 55 0 0 20.610185 0.470588 0.02 -0.149067 9 8 249 219 60 60 0 0 AA 8.422495 28 0 788 0 KEEP - Mrgprb1 YES AA_4 chr7 79228052 79228052 T A exonic Mctp2 nonsynonymous SNV NM_001024703:c.A2489T:p.K830M exonic Mctp2 nonsynonymous SNV uc009hnp.1:c.A2489T:p.K830M exonic ENSMUSG00000032776 nonsynonymous SNV ENSMUST00000079323:c.A2489T:p.K830M 7qD1 NA NA chr7 79228052 TTCxTAG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 101 2 0 57.747997 0.7 0.02 -0.263031 9 21 250 557 60 60 0 0 TT 15.340465 51 0 1425 0 KEEP - Mctp2 YES AA_4 chr7 93614678 93614678 T A exonic Olfr299 synonymous SNV NM_001011767:c.T756A:p.S252S exonic Olfr299 synonymous SNV uc009ifa.1:c.T756A:p.S252S exonic ENSMUSG00000020168 synonymous SNV ENSMUST00000057734:c.T756A:p.S252S 7qD3 NA NA chr7 93614678 TTCxTCT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 88 0 0 55.25394 0.714286 0.02 -0.245496 8 20 227 530 70 60 0 0 TT 14.108505 47 0 1281 0 KEEP + Olfr299 YES AA_4 chr7 94149999 94149999 G A intronic Vmn2r79 NA NA intronic Vmn2r79 NA NA intronic ENSMUSG00000090362 NA NA 7qD3 "Score=0.898656;Name=No.101519,chr7:94062954" NA chr7 94149999 TAAxTCA G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 150 0 3 6.457878 0.088889 0.02 -0.394574 41 4 1129 104 60 23 0 0 GG 23.460159 78 0 2158 0 KEEP + Vmn2r79 NO AA_4 chr8 10502929 10502929 A T exonic Myo16 nonsynonymous SNV NM_001081397:c.A2966T:p.E989V exonic Myo16 nonsynonymous SNV uc012fzh.1:c.A2798T:p.E933V exonic ENSMUSG00000039057 nonsynonymous SNV ENSMUST00000042103:c.A2966T:p.E989V 8qA1.1 NA NA chr8 10502929 TGGxACT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760787 0.760887 0.999869 61 0 0 48.385473 0.575758 0.02 -0.28931 14 19 380 491 60 60 0 0 AA 6.316502 21 0 584 0 KEEP + Myo16 YES AA_4 chr8 112934621 112934621 A T intronic Hydin NA NA intronic Hydin NA NA intronic ENSMUSG00000059854 NA NA 8qE1 NA NA chr8 112934621 ACCxCCT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 94 0 0 29.090796 0.342105 0.02 -0.332967 25 13 665 335 60 60 0 0 AA 12.624077 42 0 1098 0 KEEP + Hydin YES AA_4 chr8 116229086 116229086 C A exonic Adamts18 nonsynonymous SNV NM_172466:c.G3389T:p.W1130L exonic Adamts18 nonsynonymous SNV uc012gle.1:c.G1301T:p.W434L exonic ENSMUSG00000053399 nonsynonymous SNV ENSMUST00000035369:c.G2871T:p.M957I 8qE1 NA NA chr8 116229086 TGCxATG C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 91 0 0 30.57396 0.361111 0.02 -0.315677 23 13 659 346 60 60 0 0 CC 13.235755 44 0 1247 0 KEEP - Adamts18 NO AA_4 chr8 124308699 124308699 G A exonic Jph3 nonsynonymous SNV NM_020605:c.G1525A:p.E509K exonic Jph3 nonsynonymous SNV uc009nrz.1:c.G1525A:p.E509K exonic ENSMUSG00000025318 nonsynonymous SNV ENSMUST00000026357:c.G1525A:p.E509K 8qE1 NA NA chr8 124308699 GACxAGG G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 63 0 0 34.50854 0.451613 0.02 -0.271741 17 14 449 371 60 60 0 0 GG 7.519173 25 0 697 0 KEEP + Jph3 NO AA_4 chr8 23328693 23328693 A T exonic Vps36 nonsynonymous SNV NM_027338:c.A1000T:p.R334W exonic Vps36 nonsynonymous SNV uc009lcu.1:c.A70T:p.R24W exonic ENSMUSG00000031479 nonsynonymous SNV ENSMUST00000033866:c.A1000T:p.R334W 8qA2 NA NA chr8 23328693 GAAxGGG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 105 0 0 68.687021 0.518519 0.02 1.124094 26 28 719 716 60 60 0 0 AA 12.332879 41 0 1151 0 KEEP + Vps36 YES AA_4 chr8 23348983 23348983 A T UTR5 Thsd1 NA NA UTR5 Thsd1 NA NA UTR5 ENSMUSG00000031480 NA NA 8qA2 NA NA chr8 23348983 GAGxCTA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 139 0 0 64.060643 0.402985 0.02 1.001325 40 27 1054 708 60 60 0 0 AA 15.897967 53 0 1395 0 KEEP + Thsd1 YES AA_4 chr8 67492663 67492663 A T exonic Tmem192 nonsynonymous SNV NM_001163747:c.A596T:p.Y199F exonic Tmem192 nonsynonymous SNV uc009lvc.2:c.A596T:p.Y199F exonic ENSMUSG00000025521 nonsynonymous SNV ENSMUST00000079896:c.A596T:p.Y199F 8qB3.1 NA NA chr8 67492663 TGTxCCT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 88 1 0 30.260865 0.302326 0.02 -0.376961 30 13 773 355 60 60 0 0 AA 9.294282 31 0 801 0 KEEP + Tmem192 YES AA_4 chr8 74016503 74016503 G C exonic Gtpbp3 nonsynonymous SNV NM_032544:c.G1319C:p.G440A exonic Gtpbp3 nonsynonymous SNV uc009mdn.1:c.G1319C:p.G440A exonic ENSMUSG00000007610 nonsynonymous SNV ENSMUST00000007754:c.G1319C:p.G440A 8qB3.3 NA NA chr8 74016503 AGGxCTG G C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999998 102 0 0 93.286062 0.622642 0.02 1.418784 20 33 536 928 60 60 0 0 GG 10.224595 34 0 929 0 KEEP + Gtpbp3 NO AA_4 chr8 80958637 80958637 T A exonic Pou4f2 stoploss SNV NM_138944:c.A1235T:p.X412L exonic Pou4f2 stoploss SNV uc009mhy.1:c.A1235T:p.X412L exonic ENSMUSG00000031688 stoploss SNV ENSMUST00000034115:c.A1235T:p.X412L 8qC1 NA NA chr8 80958637 CCCxAAA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 296 3 0 164.095606 0.53913 0.02 2.36456 53 62 1456 1690 60 60 0 1 TT 40.853305 136 0 3733 0 KEEP - Pou4f2 YES AA_4 chr8 95702065 95702065 A C exonic Ces1d stopgain SNV NM_053200:c.T945G:p.Y315X exonic Ces1d stopgain SNV uc009mun.1:c.T945G:p.Y315X exonic ENSMUSG00000056973 stopgain SNV ENSMUST00000034172:c.T945G:p.Y315X 8qC5 NA NA chr8 95702065 GGGxTAG A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 138 2 0 77.279942 0.439394 0.02 1.206074 37 29 977 831 60 60 0 0 AA 14.436223 48 0 1311 0 KEEP - Ces1d NO AA_4 chr8 95702075 95702075 A G intronic Ces1d NA NA intronic Ces1d NA NA intronic ENSMUSG00000056973 NA NA 8qC5 NA NA chr8 95702075 TAGxGAA A G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 130 2 0 76.175533 0.439394 0.02 1.205989 37 29 1034 820 60 60 0 0 AA 12.634019 42 0 1186 0 KEEP - Ces1d NO AA_4 chr9 100453354 100453354 A C exonic Slc35g2 nonsynonymous SNV NM_001101483:c.T682G:p.C228G exonic Tmem22 nonsynonymous SNV uc012gze.1:c.T682G:p.C228G exonic ENSMUSG00000070287 nonsynonymous SNV ENSMUST00000093792:c.T682G:p.C228G 9qE3.3 NA NA chr9 100453354 TGCxAAC A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 125 0 0 81.751662 0.508475 0.02 1.366046 29 30 792 852 60 60 0 0 AA 16.824357 56 0 1506 0 KEEP - Slc35g2 NO AA_4 chr9 103391632 103391632 T A exonic Tmem108 nonsynonymous SNV NM_178638:c.A1489T:p.T497S exonic Tmem108 nonsynonymous SNV uc009rgx.2:c.A1489T:p.T497S exonic ENSMUSG00000042757 nonsynonymous SNV ENSMUST00000163573:c.A1489T:p.T497S 9qF1 NA NA chr9 103391632 CCGxCTT T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 84 0 0 70.049812 0.65 0.02 -0.350639 14 26 365 689 60 60 0 0 TT 9.622963 32 0 873 0 KEEP - Tmem108 YES AA_4 chr9 107985350 107985350 C G intronic Mst1 NA NA intronic Mst1 NA NA intronic "ENSMUSG00000032591,ENSMUSG00000041528" NA NA 9qF2 NA NA chr9 107985350 CTGxCCA C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 221 2 0 116.067489 0.483516 0.02 0.996906 47 44 1304 1224 60 60 0 0 CC 28.221201 94 0 2525 0 KEEP + Mst1 NO AA_4 chr9 108268127 108268127 C T intronic Usp4 NA NA intronic Usp4 NA NA intronic ENSMUSG00000032612 NA NA 9qF2 NA NA chr9 108268127 AAAxAGT C T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 105 0 0 56.318645 0.489362 0.02 -0.420842 24 23 669 595 60 60 0 0 CC 13.534773 45 0 1245 0 KEEP + Usp4 NO AA_4 chr9 108387839 108387839 A T exonic Lamb2 nonsynonymous SNV NM_008483:c.A2165T:p.Q722L exonic Lamb2 nonsynonymous SNV uc009rpr.2:c.A2165T:p.Q722L exonic ENSMUSG00000052911 nonsynonymous SNV ENSMUST00000065014:c.A2165T:p.Q722L 9qF2 NA NA chr9 108387839 TGCxGCC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 210 1 0 121.464044 0.516854 0.02 0.906062 43 46 1184 1263 60 60 0 0 AA 26.733749 89 0 2392 0 KEEP + Lamb2 YES AA_4 chr9 108730254 108730254 A T exonic Celsr3 nonsynonymous SNV NM_080437:c.A1604T:p.Q535L exonic Celsr3 nonsynonymous SNV uc009rrb.1:c.A1604T:p.Q535L exonic ENSMUSG00000023473 nonsynonymous SNV ENSMUST00000024238:c.A1604T:p.Q535L 9qF2 NA NA chr9 108730254 CCCxGTT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 93 0 0 72.114169 0.6 0.02 -0.403283 18 27 492 724 60 60 0 0 AA 11.714045 39 0 1056 0 KEEP + Celsr3 YES AA_4 chr9 110149703 110149703 C G exonic Cspg5 synonymous SNV NM_001166273:c.C1002G:p.G334G exonic Cspg5 synonymous SNV uc009rtt.1:c.C759G:p.G253G exonic ENSMUSG00000032482 synonymous SNV ENSMUST00000035058:c.C1002G:p.G334G 9qF2 NA NA chr9 110149703 TGGxAGC C G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 46 0 0 23.764853 0.428571 0.02 -0.201697 12 9 336 257 60 60 0 0 CC 6.01579 20 0 558 0 KEEP + Cspg5 NO AA_4 chr9 110149704 110149704 A T exonic Cspg5 nonsynonymous SNV NM_001166273:c.A1003T:p.S335C exonic Cspg5 nonsynonymous SNV uc009rtt.1:c.A760T:p.S254C exonic ENSMUSG00000032482 nonsynonymous SNV ENSMUST00000035058:c.A1003T:p.S335C 9qF2 NA NA chr9 110149704 GGCxGCA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 48 0 0 24.430124 0.434783 0.02 -0.219182 13 10 349 265 60 60 0 0 AA 6.314615 21 0 567 0 KEEP + Cspg5 YES AA_4 chr9 123022401 123022401 A T exonic Exosc7 synonymous SNV NM_001081188:c.A18T:p.L6L exonic Exosc7 synonymous SNV uc009sfv.1:c.A18T:p.L6L exonic ENSMUSG00000025785 synonymous SNV ENSMUST00000026891:c.A18T:p.L6L 9qF4 NA NA chr9 123022401 GCTxAGC A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 53 0 0 37.388828 0.608696 0.02 -0.201625 9 14 231 374 60 60 0 0 AA 6.313095 21 0 555 0 KEEP + Exosc7 YES AA_4 chr9 18792662 18792662 A T exonic Olfr834 nonsynonymous SNV NM_001011823:c.A229T:p.T77S exonic Olfr834 nonsynonymous SNV uc009ohb.1:c.A229T:p.T77S exonic ENSMUSG00000066910 nonsynonymous SNV ENSMUST00000086492:c.A229T:p.T77S 9qA2 NA NA chr9 18792662 ACCxCCA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 278 0 0 177.294761 0.536585 0.02 2.491118 57 66 1507 1827 60 60 0 0 AA 36.359725 121 0 3188 0 KEEP + Olfr834 YES AA_4 chr9 20698799 20698799 T A UTR3 Eif3g NA NA UTR3 Eif3g NA NA UTR3 ENSMUSG00000070319 NA NA 9qA3 NA NA chr9 20698799 ATTxGGA T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954489 0.954491 0.999997 94 0 0 70.898485 0.571429 0.02 -0.429486 21 28 580 721 60 60 0 0 TT 9.625163 32 0 889 0 KEEP - Eif3g YES AA_4 chr9 20999160 20999160 A T intronic Pde4a NA NA intronic Pde4a NA NA intronic ENSMUSG00000032177 NA NA 9qA3 NA NA chr9 20999160 TCTxGGA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999998 78 0 0 45.194366 0.461538 0.02 -0.341859 21 18 540 483 60 60 0 0 AA 8.804864 32 1 842 7 KEEP + Pde4a YES AA_4 chr9 30861735 30861735 A C exonic Zbtb44 nonsynonymous SNV NM_001115130:c.A855C:p.E285D exonic Zbtb44 nonsynonymous SNV uc009ord.2:c.A855C:p.E285D exonic ENSMUSG00000047412 nonsynonymous SNV ENSMUST00000167346:c.A855C:p.E285D 9qA4 NA NA chr9 30861735 AGAxGAT A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 101 0 0 56.664594 0.571429 0.02 -0.368077 18 24 496 577 60 60 0 0 AA 17.143597 57 0 1583 0 KEEP + Zbtb44 NO AA_4 chr9 39476708 39476708 A C exonic Olfr963 nonsynonymous SNV NM_001011827:c.A65C:p.E22A exonic Olfr963 nonsynonymous SNV uc009oyj.1:c.A65C:p.E22A exonic ENSMUSG00000064110 nonsynonymous SNV ENSMUST00000073433:c.A65C:p.E22A 9qA5.1 NA NA chr9 39476708 TGGxGAA A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 195 0 0 109.799655 0.488889 0.02 0.906517 46 44 1253 1159 60 60 0 0 AA 25.263887 84 0 2325 0 KEEP + Olfr963 NO AA_4 chr9 40629866 40629866 T A intergenic "Hspa8(dist=16584),Bsx(dist=52344)" NA NA intergenic "Hspa8(dist=16583),Bsx(dist=52344)" NA NA intergenic "ENSMUSG00000015656(dist=16583),ENSMUSG00000054360(dist=52344)" NA NA 9qA5.1 NA NA chr9 40629866 CCCxCTG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 88 0 0 30.077026 0.371429 0.02 -0.306673 22 13 591 339 60 60 0 0 TT 11.129413 37 0 1034 0 KEEP NA Hspa8 YES AA_4 chr9 44110602 44110602 C A exonic Hinfp synonymous SNV NM_172162:c.G60T:p.G20G exonic Hinfp synonymous SNV uc009pcr.2:c.G60T:p.G20G exonic ENSMUSG00000032119 synonymous SNV ENSMUST00000034629:c.G60T:p.G20G 9qA5.2 NA NA chr9 44110602 GGAxCCC C A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 75 0 0 34.866888 0.384615 0.02 -0.350354 24 15 666 390 60 60 0 0 CC 8.722374 29 0 801 0 KEEP - Hinfp NO AA_4 chr9 46112153 46112153 A T exonic 4931429L15Rik nonsynonymous SNV NM_183104:c.T1091A:p.L364H exonic 4931429L15Rik nonsynonymous SNV uc012gsl.1:c.T1091A:p.L364H exonic ENSMUSG00000056617 nonsynonymous SNV ENSMUST00000172280:c.T1091A:p.L364H 9qA5.2 NA NA chr9 46112153 TGGxGCT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 152 0 0 44.952942 0.351852 0.02 1.123859 35 19 967 511 60 60 0 0 AA 21.656516 72 0 2005 0 KEEP - 4931429L15Rik YES AA_4 chr9 51656706 51656706 A T exonic Arhgap20 nonsynonymous SNV NM_175535:c.A1751T:p.Y584F exonic Arhgap20 nonsynonymous SNV uc009plj.1:c.A1751T:p.Y584F exonic ENSMUSG00000053199 nonsynonymous SNV ENSMUST00000065496:c.A1751T:p.Y584F 9qA5.3 NA NA chr9 51656706 CCTxTGA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 0.999999 71 0 0 43.669813 0.551724 0.02 -0.254259 13 16 333 447 60 60 0 0 AA 10.82559 36 0 959 0 KEEP + Arhgap20 YES AA_4 chr9 53161202 53161202 A T intronic Exph5 NA NA intronic Exph5 NA NA intronic ENSMUSG00000034584 NA NA 9qA5.3 NA NA chr9 53161202 CATxGAG A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 0.999999 74 0 0 30.283141 0.413793 0.02 -0.254256 17 12 446 331 60 60 0 0 AA 10.522557 35 0 939 0 KEEP + Exph5 YES AA_4 chr9 57999138 57999138 A T intronic Stra6 NA NA intronic Stra6 NA NA intronic ENSMUSG00000032327 NA NA 9qB NA NA chr9 57999138 AACxGCA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 216 1 0 106.020511 0.519481 0.02 1.011299 37 40 1007 1101 60 60 0 0 AA 30.968054 103 0 2808 0 KEEP + Stra6 YES AA_4 chr9 60445894 60445894 T A exonic Lrrc49 nonsynonymous SNV NM_001146046:c.A1702T:p.R568W exonic Lrrc49 nonsynonymous SNV uc009pzb.1:c.A820T:p.R274W exonic ENSMUSG00000047766 nonsynonymous SNV ENSMUST00000053171:c.A820T:p.R274W 9qB NA NA chr9 60445894 ACCxGGC T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 85 3 0 30.438762 0.387097 0.02 -0.271837 19 12 526 337 60 60 0 0 TT 12.031742 40 0 1119 0 KEEP - Lrrc49 YES AA_4 chr9 61761691 61761691 T C intronic Rplp1 NA NA intronic Rplp1 NA NA intronic ENSMUSG00000007892 NA NA 9qB "Score=0.92115;Name=No.80142,chr2:90869903" NA chr9 61761691 AACxTAC T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 124 1 0 49.111585 0.4 0.02 -0.43824 30 20 831 542 60 60 0 0 TT 16.544694 55 0 1556 0 KEEP - Rplp1 NO AA_4 chr9 72699534 72699534 A C exonic Prtg nonsynonymous SNV NM_175485:c.A1362C:p.E454D exonic Prtg nonsynonymous SNV uc009qqh.1:c.A1362C:p.E454D exonic ENSMUSG00000036030 nonsynonymous SNV ENSMUST00000055535:c.A1362C:p.E454D 9qD NA NA chr9 72699534 GGAxGGT A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 70 0 0 21.364469 0.307692 0.02 -0.341783 27 12 748 261 60 60 0 0 AA 8.723349 29 0 815 0 KEEP + Prtg NO AA_4 chr9 73780061 73780061 T A exonic Unc13c nonsynonymous SNV NM_001081153:c.A1314T:p.K438N exonic Unc13c nonsynonymous SNV uc009qrb.1:c.A1314T:p.K438N exonic ENSMUSG00000062151 nonsynonymous SNV ENSMUST00000075245:c.A1314T:p.K438N 9qD NA NA chr9 73780061 GGCxTTG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979524 0.979526 0.999997 95 0 0 75.480144 0.535714 0.02 1.106598 26 30 717 780 60 60 0 1 TT 9.324433 31 0 863 0 KEEP - Unc13c YES AA_4 chr9 96041000 96041000 A T exonic Gk5 nonsynonymous SNV NM_177352:c.A469T:p.S157C exonic Gk5 nonsynonymous SNV uc012gyo.1:c.A199T:p.S67C exonic ENSMUSG00000041440 nonsynonymous SNV ENSMUST00000085217:c.A469T:p.S157C 9qE3.3 NA NA chr9 96041000 AGAxGTA A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 63 0 0 33.440537 0.482759 0.02 -0.254155 15 14 419 355 60 60 0 0 AA 7.515045 25 0 677 0 KEEP + Gk5 YES AA_4 chrX 117513631 117513631 T A exonic Pcdh11x nonsynonymous SNV NM_001271809:c.T1161A:p.D387E exonic Pcdh11x nonsynonymous SNV uc009ueg.1:c.T570A:p.D190E exonic ENSMUSG00000034755 nonsynonymous SNV ENSMUST00000050239:c.T1161A:p.D387E XqE2 NA NA chrX 117513631 GGAxAAG T A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 247 2 0 170.842676 0.947368 0.02 1.195405 3 54 77 1502 60 60 0 0 TT 43.894387 146 0 3872 0 KEEP + Pcdh11x YES AA_4 chrX 121241416 121241416 T G exonic Vmn2r121 nonsynonymous SNV NM_001100616:c.A2515C:p.K839Q exonic Vmn2r121 nonsynonymous SNV uc009vfh.1:c.A874C:p.K292Q exonic ENSMUSG00000072049 nonsynonymous SNV ENSMUST00000096792:c.A2395C:p.K799Q XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121241416 TCTxTAT T G OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 284 16 16 11.042756 0.084507 0.02 0.969239 65 6 1812 171 60 57 0 0 TT 46.051087 163 1 4535 28 KEEP - Vmn2r121 NO AA_4 chrX 121246576 121246576 G A exonic Vmn2r121 synonymous SNV NM_001100616:c.C492T:p.F164F exonic Vmn2r121 synonymous SNV uc009uep.1:c.C492T:p.F164F exonic ENSMUSG00000072049 synonymous SNV ENSMUST00000071277:c.C492T:p.F164F XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121246576 AAAxAAA G A OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 493 34 4 23.341861 0.116505 0.02 2.127709 91 12 2607 337 60 60 1 0 GG 83.619529 278 0 7980 0 KEEP - Vmn2r121 NO AA_4 chrX 148679641 148679641 A C intronic Kdm5c NA NA intronic Kdm5c NA NA intronic ENSMUSG00000025332 NA NA XqF3 NA NA chrX 148679641 CCTxCAG A C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054103 0.054137 0.999366 27 0 0 27.012564 1 0.02 -0.070161 0 8 0 232 0 60 0 0 AA 5.111901 17 0 453 0 KEEP + Kdm5c NO AA_4 chrX 166414822 166414822 T C ncRNA_intronic G530011O06Rik NA NA ncRNA_intronic "Fxy,G530011O06Rik" NA NA ncRNA_intronic ENSMUSG00000072844 NA NA XqF5 NA NA chrX 166414822 AAAxTCA T C OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 122 0 0 10.011652 0.12 0.02 1.04418 44 6 1145 151 60 60 0 0 TT 17.743169 59 0 1588 0 KEEP - G530011O06Rik NO AA_4 chrX 57298338 57298338 A T intergenic "F9(dist=14403),Mcf2(dist=10795)" NA NA intergenic "F9(dist=14403),Mcf2(dist=10795)" NA NA ncRNA_exonic ENSMUSG00000046993 NA NA XqA6 "Score=0.900291;Name=No.61218,chr15:40368742" NA chrX 57298338 CCCxGAT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291961 0.292001 0.999863 41 0 0 54.797661 1 0.02 -0.149065 0 17 0 467 0 60 0 0 AA 6.015386 20 0 551 0 KEEP NA F9 YES AA_4 chrX 95345901 95345901 A T exonic Ar nonsynonymous SNV NM_013476:c.A781T:p.M261L exonic Ar nonsynonymous SNV uc009tuv.1:c.A781T:p.M261L exonic ENSMUSG00000046532 nonsynonymous SNV ENSMUST00000052837:c.A781T:p.M261L XqC3 NA NA chrX 95345901 TGCxTGT A T OtA1979_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 35 0 0 44.079325 0.933333 0.02 -0.131533 1 14 26 390 60 60 0 0 AA 4.811939 16 0 434 0 KEEP + Ar YES AA_5 chr10 126982779 126982779 T A intronic Lrp1 NA NA intronic Lrp1 NA NA intronic ENSMUSG00000040249 NA NA 10qD3 NA NA chr10 126982779 GGCxCTC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 258 2 0 18.487482 0.080882 0.02 2.198686 125 11 3505 298 60 60 0 0 TT 28.799636 96 0 2593 0 KEEP - Lrp1 YES AA_5 chr10 126993053 126993053 T A exonic Lrp1 nonsynonymous SNV NM_008512:c.A8698T:p.S2900C exonic Lrp1 nonsynonymous SNV uc007hjx.1:c.A8698T:p.S2900C exonic ENSMUSG00000040249 nonsynonymous SNV ENSMUST00000049149:c.A8698T:p.S2900C 10qD3 NA NA chr10 126993053 GGCxGGT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992924 0.992926 0.999999 106 0 0 10.629547 0.09375 0.02 1.134025 58 6 1620 164 60 60 0 0 TT 10.526082 35 0 967 0 KEEP - Lrp1 YES AA_5 chr10 129617907 129617907 A T exonic Olfr826 nonsynonymous SNV NM_146676:c.T28A:p.S10T exonic Olfr826 nonsynonymous SNV uc007hrg.1:c.T28A:p.S10T exonic ENSMUSG00000059862 nonsynonymous SNV ENSMUST00000078322:c.T28A:p.S10T 10qD3 NA NA chr10 129617907 CTGxGTG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 154 0 2 63.6719 0.321429 0.02 0.958697 57 27 1618 737 60 60 0 0 AA 17.145524 57 0 1598 0 KEEP - Olfr826 YES AA_5 chr10 19999797 19999797 T A intronic Map7 NA NA ncRNA_intronic AK043723 NA NA intronic ENSMUSG00000019996 NA NA 10qA3 NA NA chr10 19999797 TCAxGTA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 162 0 0 67.028449 0.42623 0.02 1.258641 35 26 958 727 60 60 0 0 TT 22.250511 74 0 1980 0 KEEP + Map7 YES AA_5 chr10 23669740 23669740 C A exonic Taar3 nonsynonymous SNV NM_001008429:c.C377A:p.A126E exonic Taar3 nonsynonymous SNV uc007eqf.1:c.C377A:p.A126E exonic ENSMUSG00000069708 nonsynonymous SNV ENSMUST00000045152:c.C377A:p.A126E 10qA4 NA NA chr10 23669740 TCGxGAT C A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 280 0 0 143.519888 0.426357 0.02 2.653739 74 55 1933 1555 60 60 0 0 CC 32.999317 110 0 2864 0 KEEP + Taar3 NO AA_5 chr10 41450835 41450835 C G exonic Cep57l1 synonymous SNV NM_001243075:c.G387C:p.L129L exonic Cep57l1 synonymous SNV uc007eya.1:c.G387C:p.L129L exonic ENSMUSG00000019813 synonymous SNV ENSMUST00000019951:c.G537C:p.L179L 10qB2 NA NA chr10 41450835 TCTxAGA C G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 68 0 0 28.188337 0.37931 0.02 -0.254313 18 11 511 313 60 60 0 0 CC 9.317981 31 0 874 0 KEEP - Cep57l1 NO AA_5 chr10 49255206 49255206 A T exonic Grik2 stopgain SNV NM_001111268:c.T641A:p.L214X exonic Grik2 stopgain SNV uc007fag.2:c.T641A:p.L214X exonic ENSMUSG00000056073 stopgain SNV ENSMUST00000105484:c.T527A:p.L176X 10qB3 NA NA chr10 49255206 AGCxAAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987942 0.987943 0.999999 109 1 0 59.809843 0.4 0.02 1.169095 36 24 1006 659 60 60 0 0 AA 10.827878 36 0 995 0 KEEP - Grik2 YES AA_5 chr10 59882529 59882529 T C exonic Cdh23 nonsynonymous SNV NM_001252635:c.A2315G:p.N772S exonic Cdh23 nonsynonymous SNV uc007fev.1:c.A2315G:p.N772S exonic ENSMUSG00000012819 nonsynonymous SNV ENSMUST00000073242:c.A2321G:p.N774S 10qB4 NA NA chr10 59882529 TGGxTGT T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.996724 0.996724 1 167 0 0 10.88259 0.085714 0.02 1.08154 64 6 1749 169 60 60 0 0 TT 21.319608 71 0 1930 0 KEEP - Cdh23 NO AA_5 chr10 76026853 76026853 A T exonic Spatc1l nonsynonymous SNV NM_029661:c.A463T:p.R155W exonic 1700027D21Rik nonsynonymous SNV uc007fur.1:c.A463T:p.R155W exonic ENSMUSG00000009115 nonsynonymous SNV ENSMUST00000009259:c.A463T:p.R155W 10qC1 NA NA chr10 76026853 CCCxGGG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.88875 0.888875 0.99986 66 0 0 43.226643 0.414634 0.02 -0.35954 24 17 682 472 60 60 0 0 AA 5.714974 19 0 529 0 KEEP + Spatc1l YES AA_5 chr10 77856338 77856338 G A intergenic "Agpat3(dist=41893),Rrp1(dist=6769)" NA NA intergenic "Agpat3(dist=41151),Rrp1(dist=6769)" NA NA exonic ENSMUSG00000064317 nonsynonymous SNV ENSMUST00000072739:c.G274A:p.A92T 10qC1 NA NA chr10 77856338 GAGxCCA G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138789 0.139832 0.99254 48 0 20 8.49072 0.333333 0.02 -0.105178 8 4 214 99 36 36 0 0 GG 6.61691 22 0 606 0 KEEP NA Agpat3 NO AA_5 chr10 79187543 79187543 A T exonic Hcn2 nonsynonymous SNV NM_008226:c.A962T:p.H321L exonic Hcn2 nonsynonymous SNV uc007fzn.1:c.A962T:p.H321L exonic ENSMUSG00000020331 nonsynonymous SNV ENSMUST00000020581:c.A962T:p.H321L 10qC1 NA NA chr10 79187543 TCCxCCA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865667 0.865745 0.999909 77 0 0 10.304525 0.128205 0.02 -0.341932 34 5 919 144 60 60 0 0 AA 7.213076 24 0 633 0 KEEP + Hcn2 YES AA_5 chr10 80357611 80357611 T A exonic Tmprss9 nonsynonymous SNV NM_001081688:c.T2225A:p.V742E exonic Tmprss9 nonsynonymous SNV uc011xja.1:c.T2225A:p.V742E exonic ENSMUSG00000059406 nonsynonymous SNV ENSMUST00000049491:c.T2123A:p.V708E 10qC1 NA NA chr10 80357611 TCGxGAG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 174 1 0 8.248133 0.051546 0.02 0.844679 92 5 2526 144 60 60 0 0 TT 18.946682 63 0 1705 0 KEEP + Tmprss9 YES AA_5 chr10 80494039 80494039 C G exonic Slc39a3 nonsynonymous SNV NM_134135:c.G617C:p.G206A exonic Slc39a3 nonsynonymous SNV uc007gfq.1:c.G617C:p.G206A exonic ENSMUSG00000046822 nonsynonymous SNV ENSMUST00000168076:c.G617C:p.G206A 10qC1 NA NA chr10 80494039 ACGxCAA C G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.486967 0.490544 0.992708 34 0 0 11.357498 0.217391 0.02 -0.201687 18 5 506 142 60 60 0 0 CC 3.007796 10 0 277 0 KEEP - Slc39a3 NO AA_5 chr10 80795614 80795614 G T exonic Tbxa2r nonsynonymous SNV NM_001277265:c.G391T:p.V131L exonic Tbxa2r nonsynonymous SNV uc007ghh.1:c.G391T:p.V131L exonic ENSMUSG00000034881 nonsynonymous SNV ENSMUST00000105325:c.G391T:p.V131L 10qC1 NA NA chr10 80795614 TTCxTGG G T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 147 0 0 53.632308 0.261364 0.02 0.924083 65 23 1586 646 60 60 0 0 GG 11.973426 40 0 970 0 KEEP + Tbxa2r NO AA_5 chr10 8570258 8570258 G A exonic Sash1 nonsynonymous SNV NM_175155:c.C167T:p.A56V exonic "SASH1,Sash1" nonsynonymous SNV uc007eiu.1:c.C167T:p.A56V exonic ENSMUSG00000015305 nonsynonymous SNV ENSMUST00000015449:c.C167T:p.A56V 10qA1 NA NA chr10 8570258 TGTxCCA G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 172 0 0 60.496389 0.325 0.02 0.985014 54 26 1495 700 60 60 0 0 GG 23.737852 79 0 2136 0 KEEP - Sash1 NO AA_5 chr10 88138726 88138726 T A exonic Spic stopgain SNV NM_011461:c.A412T:p.R138X exonic Spic stopgain SNV uc007grv.2:c.A412T:p.R138X exonic ENSMUSG00000004359 stopgain SNV ENSMUST00000139567:c.A109T:p.R37X 10qC1 NA NA chr10 88138726 CTCxGGC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 155 0 0 10.886419 0.092308 0.02 1.125252 59 6 1649 167 60 60 0 0 TT 21.955225 73 0 1996 0 KEEP - Spic YES AA_5 chr11 101612323 101612323 A T exonic Dhx8 nonsynonymous SNV NM_144831:c.A1932T:p.R644S exonic Dhx8 nonsynonymous SNV uc007lpr.1:c.A1932T:p.R644S exonic ENSMUSG00000034931 nonsynonymous SNV ENSMUST00000129741:c.A1773T:p.R591S 11qD NA NA chr11 101612323 AAGxGTG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 62 0 0 18.910442 0.32 0.02 -0.219237 17 8 490 219 60 60 0 0 AA 8.723395 29 0 817 0 KEEP + Dhx8 YES AA_5 chr11 102146278 102146278 A T UTR5 Tmub2 NA NA UTR5 Tmub2 NA NA exonic ENSMUSG00000034757 unknown UNKNOWN 11qD NA NA chr11 102146278 GAGxAAA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 50 0 0 30.404434 0.48 0.02 -0.219201 13 12 360 322 60 60 0 0 AA 5.414273 18 0 502 0 KEEP + Tmub2 YES AA_5 chr11 109088822 109088822 A T exonic Rgs9 nonsynonymous SNV NM_011268:c.T1495A:p.S499T exonic Rgs9 nonsynonymous SNV uc011ygs.1:c.T907A:p.S303T exonic ENSMUSG00000020599 nonsynonymous SNV ENSMUST00000103062:c.T817A:p.S273T 11qE1 NA NA chr11 109088822 GGGxGCG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800133 0.800245 0.99986 59 0 0 30.013481 0.4 0.02 -0.306376 21 14 589 336 60 60 0 0 AA 5.713755 19 0 517 0 KEEP - Rgs9 YES AA_5 chr11 109947815 109947815 C T exonic Abca8a nonsynonymous SNV NM_153145:c.G431A:p.R144K exonic "Abca8a,abca8a" nonsynonymous SNV uc011ygu.1:c.G431A:p.R144K exonic ENSMUSG00000041828 nonsynonymous SNV ENSMUST00000106664:c.G347A:p.R116K 11qE1 NA NA chr11 109947815 ATCxTTG C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668451 0.668523 0.999892 59 0 0 22.094144 0.310345 0.02 -0.254302 20 9 554 256 60 60 0 0 CC 6.918743 23 0 653 0 KEEP - Abca8a NO AA_5 chr11 29460845 29460845 C T exonic 1700034F02Rik synonymous SNV NM_001163521:c.C813T:p.Y271Y exonic 1700034F02Rik synonymous SNV uc007ihi.2:c.C846T:p.Y282Y exonic ENSMUSG00000020461 synonymous SNV ENSMUST00000020753:c.C846T:p.Y282Y 11qA3.3 NA NA chr11 29460845 CTAxGGT C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.99986 51 0 0 19.115018 0.32 0.02 -0.219046 17 8 396 221 60 60 0 0 CC 5.706286 19 0 451 0 KEEP + 1700034F02Rik NO AA_5 chr11 33143150 33143150 A G exonic Ranbp17 nonsynonymous SNV NM_023146:c.T2903C:p.L968P exonic Ranbp17 nonsynonymous SNV uc007ikh.2:c.T2903C:p.L968P exonic ENSMUSG00000040594 nonsynonymous SNV ENSMUST00000102815:c.T2903C:p.L968P 11qA4 NA NA chr11 33143150 AACxGTC A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 126 0 0 7.53808 0.083333 0.02 1.071238 55 5 1548 126 60 60 0 0 AA 16.240924 54 0 1494 0 KEEP - Ranbp17 NO AA_5 chr11 48833873 48833873 T C intergenic "Tgtp2(dist=28117),9930111J21Rik2(dist=17289)" NA NA intergenic "Gm12185(dist=28117),9930111J21Rik2(dist=17289)" NA NA exonic ENSMUSG00000069892 nonsynonymous SNV ENSMUST00000101295:c.A1234G:p.T412A 11qB1.2 "Score=0.995566;Name=No.12943,chr11:48759651" NA chr11 48833873 ATGxAGC T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.996717 0.996724 0.999993 138 0 10 69.470317 0.4 0.02 1.180173 42 28 1129 766 60 60 0 0 TT 14.398993 48 0 1256 0 KEEP NA Tgtp2 NO AA_5 chr11 49283818 49283818 T A exonic Olfr1386 nonsynonymous SNV NM_001011741:c.T164A:p.L55Q exonic Olfr1386 nonsynonymous SNV uc007iqn.2:c.T164A:p.L55Q exonic ENSMUSG00000062285 nonsynonymous SNV ENSMUST00000071905:c.T164A:p.L55Q 11qB1.2 "Score=0.921244;Name=No.12947,chr11:49300716" NA chr11 49283818 GACxGCA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 677 8 0 129.043978 0.235294 0.02 4.685493 182 56 5138 1587 60 60 0 1 TT 105.483683 351 0 9635 0 KEEP + Olfr1386 YES AA_5 chr11 59362950 59362950 A G exonic Nlrp3 nonsynonymous SNV NM_145827:c.A1850G:p.K617R exonic Nlrp3 nonsynonymous SNV uc007jei.1:c.A1850G:p.K617R exonic ENSMUSG00000032691 nonsynonymous SNV ENSMUST00000101147:c.A1850G:p.K617R 11qB1.3 NA NA chr11 59362950 CCAxGAA A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 187 1 0 24.314543 0.136364 0.02 0.914749 76 12 2149 338 60 60 0 0 AA 25.567078 85 0 2370 0 KEEP + Nlrp3 NO AA_5 chr11 6681943 6681943 T A intergenic "Gm11981(dist=61903),Adcy1(dist=281549)" NA NA intergenic "AK076664(dist=61903),Adcy1(dist=281549)" NA NA ncRNA_exonic ENSMUSG00000083819 NA NA 11qA1 NA NA chr11 6681943 GGGxTTT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 76 0 0 29.439428 0.387097 0.02 -0.271783 19 12 504 327 60 60 0 0 TT 11.422661 38 0 1019 0 KEEP NA Gm11981 YES AA_5 chr11 69819899 69819899 C T exonic Dvl2 synonymous SNV NM_007888:c.C924T:p.D308D exonic Dvl2 synonymous SNV uc007jtl.1:c.C924T:p.D308D exonic ENSMUSG00000020888 synonymous SNV ENSMUST00000019362:c.C924T:p.D308D 11qB3 NA NA chr11 69819899 GGAxGGG C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 120 0 0 50.915011 0.323529 0.02 0.993009 46 22 1105 590 60 60 0 0 CC 13.470779 45 0 1060 0 KEEP + Dvl2 NO AA_5 chr11 70846739 70846739 A T exonic 6330403K07Rik nonsynonymous SNV NM_134022:c.T166A:p.L56M exonic 6330403K07Rik nonsynonymous SNV uc007jxo.1:c.T166A:p.L56M ncRNA_exonic ENSMUSG00000018451 NA NA 11qB4 NA NA chr11 70846739 TCAxACG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888874 0.888875 0.999999 85 0 0 27.114046 0.3 0.02 -0.350731 28 12 777 320 60 60 0 0 AA 10.526363 35 0 956 0 KEEP - 6330403K07Rik YES AA_5 chr11 80181684 80181684 T A exonic 5730455P16Rik nonsynonymous SNV NM_027472:c.A751T:p.S251C exonic 5730455P16Rik nonsynonymous SNV uc007klv.2:c.A751T:p.S251C exonic ENSMUSG00000057181 nonsynonymous SNV ENSMUST00000103225:c.A751T:p.S251C 11qB5 NA NA chr11 80181684 GACxGGC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 73 0 0 17.825841 0.205128 0.02 -0.341999 31 8 871 226 60 60 0 0 TT 8.722318 29 0 798 0 KEEP - 5730455P16Rik YES AA_5 chr11 84335648 84335648 A T exonic Lhx1 nonsynonymous SNV NM_008498:c.T313A:p.Y105N exonic Lhx1 nonsynonymous SNV uc007kqo.1:c.T313A:p.Y105N exonic ENSMUSG00000018698 nonsynonymous SNV ENSMUST00000018842:c.T313A:p.Y105N 11qC NA NA chr11 84335648 TGTxGAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 90 0 0 31.421421 0.309524 0.02 -0.368135 29 13 786 365 60 60 0 0 AA 11.728752 39 0 1055 0 KEEP - Lhx1 YES AA_5 chr11 85878483 85878483 T C exonic Brip1 nonsynonymous SNV NM_178309:c.A2705G:p.E902G exonic Brip1 nonsynonymous SNV uc011ybr.1:c.A2483G:p.E828G exonic ENSMUSG00000034329 nonsynonymous SNV ENSMUST00000044423:c.A2705G:p.E902G 11qC NA NA chr11 85878483 TTTxCGT T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 116 0 0 38.533865 0.290909 0.02 1.204183 39 16 1080 453 60 60 0 0 TT 16.54319 55 0 1529 0 KEEP - Brip1 NO AA_5 chr11 87425440 87425440 A C exonic Mtmr4 synonymous SNV NM_133215:c.A2817C:p.A939A exonic Mtmr4 synonymous SNV uc007kua.1:c.A2646C:p.A882A exonic ENSMUSG00000018401 synonymous SNV ENSMUST00000092802:c.A2646C:p.A882A 11qC NA NA chr11 87425440 TGCxGGG A C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999999 73 2 0 22.379366 0.354839 0.02 -0.271639 20 11 567 259 60 60 0 0 AA 10.525661 35 0 960 0 KEEP + Mtmr4 NO AA_5 chr11 97317725 97317725 A T intronic Arhgap23 NA NA intronic Arhgap23 NA NA intronic ENSMUSG00000049807 NA NA 11qD NA NA chr11 97317725 GGTxTTA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760877 0.760887 0.999988 70 2 0 21.29886 0.272727 0.02 -0.289329 24 9 630 254 60 60 0 0 AA 8.118228 27 0 713 0 KEEP + Arhgap23 YES AA_5 chr11 97410244 97410244 A T exonic Srcin1 nonsynonymous SNV NM_018873:c.T373A:p.S125T exonic Srcin1 nonsynonymous SNV uc007lee.1:c.T373A:p.S125T exonic ENSMUSG00000038453 nonsynonymous SNV ENSMUST00000064145:c.T475A:p.S159T 11qD NA NA chr11 97410244 GGGxACA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120013 0.120436 0.99649 30 0 0 12.372684 0.5 0.02 -0.087676 5 5 140 130 60 60 0 0 AA 4.511556 15 0 413 0 KEEP - Srcin1 YES AA_5 chr11 98532682 98532682 A T intronic Gsdma NA NA intronic Gsdma NA NA intronic ENSMUSG00000017204 NA NA 11qD NA NA chr11 98532682 GGTxGGT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 107 0 0 51.239047 0.465116 0.02 -0.376966 23 20 628 546 60 60 0 0 AA 15.30137 51 0 1369 0 KEEP + Gsdma YES AA_5 chr11 99625240 99625240 A T intergenic "Krtap4-6(dist=97966),Gm11595(dist=7788)" NA NA intergenic "Krtap4-6(dist=97966),Gm11595(dist=7788)" NA NA downstream ENSMUSG00000078263 NA NA 11qD NA NA chr11 99625240 AGCxGGT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 94 0 0 33.274425 0.371429 0.02 -0.306924 22 13 613 371 60 60 0 0 AA 13.833907 46 0 1261 0 KEEP NA Krtap4-6 YES AA_5 chr12 100039299 100039299 A T exonic Eml5 synonymous SNV NM_001081191:c.T4554A:p.G1518G exonic Eml5 synonymous SNV uc011ypy.1:c.T4413A:p.G1471G exonic ENSMUSG00000051166 synonymous SNV ENSMUST00000029746:c.T4413A:p.G1471G 12qE NA NA chr12 100039299 CCCxCCT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 33 0 0 8.782059 0.235294 0.02 -0.149039 13 4 346 109 60 60 0 0 AA 3.158984 14 1 348 9 KEEP - Eml5 YES AA_5 chr12 103492778 103492778 T A exonic Slc24a4 stopgain SNV NM_172152:c.T1263A:p.C421X exonic Slc24a4 stopgain SNV uc007oty.1:c.T1263A:p.C421X exonic ENSMUSG00000041771 stopgain SNV ENSMUST00000079020:c.T1263A:p.C421X 12qE NA NA chr12 103492778 GTGxGTC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 429 0 0 142.555185 0.407407 0.02 2.306362 80 55 2166 1559 60 60 0 0 TT 67.950171 226 0 6056 0 KEEP + Slc24a4 YES AA_5 chr12 105556837 105556837 G T exonic Serpina3j synonymous SNV NM_001101472:c.G1062T:p.R354R exonic Serpina3j synonymous SNV uc011yrg.1:c.G1062T:p.R354R exonic ENSMUSG00000079013 synonymous SNV ENSMUST00000109957:c.G1062T:p.R354R 12qE NA NA chr12 105556837 TCGxGTA G T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800148 0.800245 0.999879 60 0 0 29.339052 0.352941 0.02 -0.298104 22 12 600 332 60 60 0 0 GG 6.617556 22 0 616 0 KEEP + Serpina3j NO AA_5 chr12 111856301 111856301 T C exonic Dync1h1 nonsynonymous SNV NM_030238:c.T1927C:p.S643P exonic Dync1h1 nonsynonymous SNV uc007pbo.1:c.T1927C:p.S643P exonic ENSMUSG00000018707 nonsynonymous SNV ENSMUST00000018851:c.T1927C:p.S643P 12qF1 NA NA chr12 111856301 GTGxCAG T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 79 0 0 18.03884 0.222222 0.02 -0.315631 28 8 758 225 60 60 0 0 TT 12.029574 40 0 1084 0 KEEP + Dync1h1 NO AA_5 chr12 16695376 16695376 T G exonic Greb1 nonsynonymous SNV NM_001252071:c.A4307C:p.K1436T exonic Greb1 nonsynonymous SNV uc011ykk.1:c.A4307C:p.K1436T exonic ENSMUSG00000036523 nonsynonymous SNV ENSMUST00000048064:c.A4391C:p.K1464T 12qA1.1 NA NA chr12 16695376 TACxTGG T G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 124 0 0 12.48519 0.129032 0.02 0.956403 54 8 1516 190 60 60 0 0 TT 15.631499 52 0 1431 0 KEEP - Greb1 NO AA_5 chr12 32888925 32888925 T A exonic Pik3cg nonsynonymous SNV NM_001146200:c.A1927T:p.I643F exonic Pik3cg nonsynonymous SNV uc007nib.2:c.A1927T:p.I643F exonic ENSMUSG00000020573 nonsynonymous SNV ENSMUST00000020890:c.A1927T:p.I643F 12qA3 NA NA chr12 32888925 CAAxGGC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 97 0 0 56.076867 0.488372 0.02 -0.385817 22 21 595 590 60 60 0 0 TT 14.134624 47 0 1268 0 KEEP - Pik3cg YES AA_5 chr12 39509870 39509870 A T exonic Etv1 nonsynonymous SNV NM_007960:c.A179T:p.E60V exonic Etv1 nonsynonymous SNV uc007nkp.2:c.A179T:p.E60V exonic ENSMUSG00000004151 nonsynonymous SNV ENSMUST00000160856:c.A179T:p.E60V 12qA3 NA NA chr12 39509870 CTGxAGG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 84 0 0 18.347147 0.307692 0.02 -0.227987 18 8 506 215 60 60 0 0 AA 13.836247 46 0 1282 0 KEEP + Etv1 YES AA_5 chr12 4713891 4713891 C T exonic Itsn2 nonsynonymous SNV NM_011365:c.C4093T:p.R1365W exonic Itsn2 nonsynonymous SNV uc007mxx.1:c.C4093T:p.R1365W exonic ENSMUSG00000020640 nonsynonymous SNV ENSMUST00000062580:c.C4093T:p.R1365W 12qA1.1 NA NA chr12 4713891 GACxGGC C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 119 2 0 66.503304 0.480769 0.02 1.239606 27 25 605 702 60 60 0 0 CC 17.396399 58 0 1346 0 KEEP + Itsn2 NO AA_5 chr12 85991478 85991478 T C exonic Vrtn nonsynonymous SNV NM_001033776:c.T2051C:p.L684P exonic Vrtn nonsynonymous SNV uc007ofq.1:c.T2051C:p.L684P exonic ENSMUSG00000071235 nonsynonymous SNV ENSMUST00000095551:c.T2051C:p.L684P 12qD1 NA NA chr12 85991478 TGCxTAC T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 93 0 0 14.725831 0.152174 0.02 -0.40336 39 7 1083 199 60 60 0 0 TT 12.006475 40 0 1057 0 KEEP + Vrtn NO AA_5 chr12 87137092 87137092 A T intronic Mfsd7c NA NA intronic Mfsd7c NA NA intronic ENSMUSG00000034258 NA NA 12qD2 NA NA chr12 87137092 GGCxGAT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 124 0 0 38.77324 0.375 0.02 -0.350457 25 15 684 431 60 60 0 0 AA 20.735955 69 0 1852 0 KEEP + Mfsd7c YES AA_5 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 378 7 101 17.160663 0.096774 0.02 1.912894 112 12 3082 285 60 36 0 0 TT 52.605102 175 0 4658 0 KEEP - Gm2042 NO AA_5 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 326 8 48 25.863067 0.118182 0.02 2.390823 97 13 2672 370 60 37 0 0 TT 54.737132 182 0 4974 0 KEEP - Gm2042 NO AA_5 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 110 3 2 14.053296 0.14 0.02 -0.438425 43 7 1196 195 60 60 0 0 CC 13.23384 44 0 1211 0 KEEP - Gm2042 NO AA_5 chr13 23275618 23275618 A T exonic Vmn1r220 nonsynonymous SNV NM_134237:c.T776A:p.L259Q exonic Vmn1r220 nonsynonymous SNV uc007ptk.1:c.T776A:p.L259Q exonic ENSMUSG00000057395 nonsynonymous SNV ENSMUST00000072385:c.T776A:p.L259Q 13qA3.1 "Score=0.910782;Name=No.32694,chr13:23201093" NA chr13 23275618 CCCxGGG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 161 0 0 43.821683 0.285714 0.02 1.133989 45 18 1257 516 60 60 0 0 AA 27.068148 90 0 2461 0 KEEP - Vmn1r220 YES AA_5 chr13 27603510 27603510 A T intronic Prl8a8 NA NA intronic Prl8a8 NA NA intronic ENSMUSG00000021346 NA NA 13qA3.1 NA NA chr13 27603510 CTTxGAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 0.999999 69 0 0 19.34767 0.307692 0.02 -0.228006 18 8 512 225 60 60 0 0 AA 10.828249 36 0 1001 0 KEEP - Prl8a8 YES AA_5 chr13 4278508 4278508 T A intronic Akr1c12 NA NA intronic Akr1c12 NA NA intronic ENSMUSG00000021211 NA NA 13qA1 NA NA chr13 4278508 TTCxGTA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 282 1 0 10.359521 0.070588 0.02 0.950134 79 6 2230 169 60 60 0 0 TT 48.425823 161 0 4483 0 KEEP - Akr1c12 YES AA_5 chr13 4513673 4513673 A C exonic Akr1c20 nonsynonymous SNV NM_054080:c.T86G:p.V29G exonic Akr1c20 nonsynonymous SNV uc007pjp.1:c.T86G:p.V29G exonic ENSMUSG00000054757 nonsynonymous SNV ENSMUST00000078239:c.T86G:p.V29G 13qA1 NA NA chr13 4513673 GGTxCCT A C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 125 0 0 10.326745 0.135135 0.02 -0.324414 32 5 858 143 60 60 0 0 AA 19.529853 65 0 1696 0 KEEP - Akr1c20 NO AA_5 chr13 55112645 55112645 T A exonic Hk3 synonymous SNV NM_001206392:c.A1293T:p.A431A exonic Hk3 synonymous SNV uc007qpu.1:c.A1293T:p.A431A exonic ENSMUSG00000025877 synonymous SNV ENSMUST00000153665:c.A1293T:p.A431A 13qB1 NA NA chr13 55112645 TGGxGCC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 40 0 0 9.169384 0.222222 0.02 -0.157817 14 4 376 114 60 60 0 0 TT 5.713726 19 0 509 0 KEEP - Hk3 YES AA_5 chr13 55484930 55484930 C T exonic Rgs14 stopgain SNV NM_016758:c.C1387T:p.Q463X exonic Rgs14 stopgain SNV uc007qqr.1:c.C889T:p.Q297X exonic ENSMUSG00000052087 stopgain SNV ENSMUST00000063771:c.C1387T:p.Q463X 13qB1 NA NA chr13 55484930 AGTxAGG C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 160 0 0 60.50643 0.378788 0.02 1.107805 41 25 1141 676 60 60 0 0 CC 23.763398 79 0 2243 0 KEEP + Rgs14 NO AA_5 chr13 56649647 56649647 A T intronic Lect2 NA NA intronic Lect2 NA NA intronic ENSMUSG00000021539 NA NA 13qB1 NA NA chr13 56649647 GCCxGGA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 91 0 0 26.574184 0.282051 0.02 -0.342 28 11 782 314 60 60 0 0 AA 12.630099 42 0 1135 0 KEEP - Lect2 YES AA_5 chr13 62108438 62108438 G C intergenic "BC052688(dist=219796),Zfp808(dist=122812)" NA NA intergenic "AK006455(dist=180554),A130040M12Rik(dist=76069)" NA NA intergenic "ENSMUSG00000080451(dist=183414),ENSMUSG00000092904(dist=1389)" NA NA 13qB3 "Score=0.960103;Name=No.33008,chr13:61865990" NA chr13 62108438 ACAxATG G C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668463 0.668523 0.999909 60 1 1 8.558933 0.137931 0.02 -0.254302 25 4 702 117 60 29 0 0 GG 7.219695 24 0 687 0 KEEP NA BC052688 NO AA_5 chr13 62489262 62489262 C G intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "ENSMUSG00000089002(dist=2850),ENSMUSG00000055228(dist=66421)" NA NA 13qB3 "Score=0.952824;Name=No.33007,chr13:61865461" NA chr13 62489262 TGTxCAA C G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 221 0 1 7.752426 0.088889 0.02 -0.403347 41 4 1149 117 60 29 0 0 CC 41.211337 137 0 3888 0 KEEP NA Gm3604 NO AA_5 chr13 66955894 66955894 A G intergenic "2410141K09Rik(dist=413840),Uqcrb(dist=45663)" NA NA intergenic "AK049212(dist=101975),Uqcrb(dist=45663)" NA NA splicing ENSMUSG00000071295(ENSMUST00000079229:exon2:c.3+2T>C) NA NA 13qB3 "Score=0.980557;Name=No.34397,chr13:66750246" NA chr13 66955894 ATCxCCA A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 185 4 26 15.294829 0.636364 0.02 -0.105092 4 7 105 151 38 23 0 0 AA 41.491178 138 0 3682 0 KEEP NA 2410141K09Rik NO AA_5 chr14 21380842 21380842 T A exonic Usp54 nonsynonymous SNV NM_030180:c.A3127T:p.N1043Y exonic Usp54 nonsynonymous SNV uc007skb.1:c.A3127T:p.N1043Y exonic ENSMUSG00000034235 nonsynonymous SNV ENSMUST00000022356:c.A3127T:p.N1043Y 14qA3 NA NA chr14 21380842 GGTxAAG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 63 0 0 28.500143 0.44 0.02 -0.2192 14 11 372 307 60 60 0 0 TT 8.420366 28 0 754 0 KEEP + Usp54 YES AA_5 chr14 27192438 27192438 A T ncRNA_intronic 4933413J09Rik NA NA ncRNA_intronic AK087762 NA NA ncRNA_intronic ENSMUSG00000021874 NA NA 14qA3 NA NA chr14 27192438 CCCxGCT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522098 0.522161 0.999879 53 0 0 14.403062 0.25 0.02 -0.210454 18 6 498 174 60 60 0 0 AA 6.616669 22 0 602 0 KEEP + 4933413J09Rik YES AA_5 chr14 29856763 29856763 T A exonic Cacna2d3 synonymous SNV NM_009785:c.A2373T:p.T791T exonic Cacna2d3 synonymous SNV uc007sui.1:c.A2373T:p.T791T exonic ENSMUSG00000021991 synonymous SNV ENSMUST00000022567:c.A2373T:p.T791T 14qA3 NA NA chr14 29856763 GACxGTT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 165 0 0 43.977116 0.28125 0.02 1.23229 46 18 1291 519 60 60 0 0 TT 23.759135 79 0 2150 0 KEEP - Cacna2d3 YES AA_5 chr14 33221932 33221932 T A exonic Chat stoploss SNV NM_009891:c.A1937T:p.X646L exonic Chat stoploss SNV uc007syv.1:c.A1937T:p.X646L exonic ENSMUSG00000021919 stoploss SNV ENSMUST00000070125:c.A1937T:p.X646L 14qB NA NA chr14 33221932 GGCxAGT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 85 0 0 36.897946 0.348837 0.02 -0.376333 28 15 761 418 60 60 0 0 TT 10.22457 34 0 921 0 KEEP - Chat YES AA_5 chr14 34769233 34769233 C G exonic Rbp3 nonsynonymous SNV NM_015745:c.C1951G:p.R651G exonic Rbp3 nonsynonymous SNV uc007tad.1:c.C1951G:p.R651G exonic ENSMUSG00000041534 nonsynonymous SNV ENSMUST00000035695:c.C1951G:p.R651G 14qB NA NA chr14 34769233 GCCxGGC C G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963687 0.963774 0.999909 80 0 0 34.959747 0.313725 0.02 1.248382 35 16 863 411 60 60 0 0 CC 7.209592 24 0 591 0 KEEP + Rbp3 NO AA_5 chr14 49656503 49656503 T A exonic Exoc5 synonymous SNV NM_207214:c.A786T:p.G262G exonic Exoc5 synonymous SNV uc007tjv.2:c.A786T:p.G262G exonic ENSMUSG00000061244 synonymous SNV ENSMUST00000160386:c.A279T:p.G93G 14qC1 NA NA chr14 49656503 GTCxCCA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 125 0 0 24.845009 0.234043 0.02 -0.412164 36 11 1024 307 60 60 0 0 TT 16.544247 55 0 1547 0 KEEP - Exoc5 YES AA_5 chr14 50806532 50806532 A T exonic Olfr730 nonsynonymous SNV NM_146493:c.T362A:p.F121Y exonic Olfr730 nonsynonymous SNV uc007tkt.1:c.T362A:p.F121Y exonic ENSMUSG00000050431 nonsynonymous SNV ENSMUST00000051453:c.T362A:p.F121Y 14qC1 NA NA chr14 50806532 TCAxAAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 100 2 0 64.910554 0.531915 0.02 -0.412116 22 25 618 671 60 60 0 0 AA 11.064718 41 1 1133 11 KEEP - Olfr730 YES AA_5 chr14 52772035 52772035 T A intronic Rpgrip1 NA NA intronic Rpgrip1 NA NA intronic ENSMUSG00000057132 NA NA 14qC2 NA NA chr14 52772035 AACxATC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.2608 0.260965 0.999366 38 0 0 18.537977 0.466667 0.02 -0.140298 8 7 217 197 60 60 0 0 TT 5.112438 17 0 459 0 KEEP + Rpgrip1 YES AA_5 chr14 53692811 53692811 A T intergenic "Olfr1507(dist=577441),A430107P09Rik(dist=592804)" NA NA ncRNA_intronic M21205 NA NA exonic ENSMUSG00000076797 nonsynonymous SNV ENSMUST00000103607:c.A133T:p.S45C 14qC2 "Score=0.98979;Name=No.53368,chr14:53716892" NA chr14 53692811 GTCxGCC A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 319 1 8 105.985225 0.312057 0.02 2.154075 97 44 2701 1230 60 60 0 0 AA 44.199365 147 0 3994 0 KEEP + Olfr1507 YES AA_5 chr14 54741830 54741830 T A intergenic "A430107P09Rik(dist=453820),Dad1(dist=113330)" NA NA ncRNA_intronic M26425 NA NA upstream "ENSMUSG00000076869,ENSMUSG00000076870" NA NA 14qC2 NA NA chr14 54741830 ACCxGGC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 61 0 0 13.245624 0.2 0.02 -0.263091 24 6 687 169 60 60 0 0 TT 8.422477 28 0 786 0 KEEP + A430107P09Rik YES AA_5 chr14 56255445 56255445 T A exonic Tm9sf1 nonsynonymous SNV NM_028780:c.A1432T:p.I478F exonic Tm9sf1 nonsynonymous SNV uc007tzs.1:c.A1432T:p.I478F exonic ENSMUSG00000002320 nonsynonymous SNV ENSMUST00000002391:c.A1432T:p.I478F 14qC3 NA NA chr14 56255445 AGAxGGC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 50 0 0 6.362087 0.15 0.02 -0.17538 17 3 471 86 60 60 0 0 TT 6.014507 20 0 537 0 KEEP - Tm9sf1 YES AA_5 chr14 57742979 57742979 T C exonic Gjb6 nonsynonymous SNV NM_001010937:c.A661G:p.R221G exonic Gjb6 nonsynonymous SNV uc011zmf.1:c.A661G:p.R221G exonic ENSMUSG00000040055 nonsynonymous SNV ENSMUST00000039380:c.A661G:p.R221G 14qC3 NA NA chr14 57742979 ATCxCCT T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 136 0 0 11.256134 0.098361 0.02 1.160276 55 6 1568 169 60 60 0 1 TT 17.444341 58 0 1607 0 KEEP - Gjb6 NO AA_5 chr14 70092898 70092898 T C exonic Loxl2 nonsynonymous SNV NM_033325:c.T2303C:p.L768P exonic Loxl2 nonsynonymous SNV uc007umn.2:c.T2303C:p.L768P exonic ENSMUSG00000034205 nonsynonymous SNV ENSMUST00000022660:c.T2303C:p.L768P 14qD2 NA NA chr14 70092898 GACxTCT T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423459 0.423478 0.999957 53 0 0 9.069554 0.190476 0.02 -0.18416 17 4 479 116 60 60 0 0 TT 7.820969 26 0 733 0 KEEP + Loxl2 NO AA_5 chr15 101059372 101059372 A C intronic Grasp NA NA intronic Grasp NA NA intronic ENSMUSG00000000531 NA NA 15qF2 NA NA chr15 101059372 TGGxGCA A C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 130 0 0 57.841781 0.366197 0.02 0.974976 45 26 1248 657 60 60 0 0 AA 14.137044 47 0 1313 0 KEEP + Grasp NO AA_5 chr15 50663452 50663452 T A exonic Trps1 nonsynonymous SNV NM_032000:c.A980T:p.Q327L exonic Trps1 nonsynonymous SNV uc011zst.1:c.A119T:p.Q40L exonic ENSMUSG00000038679 nonsynonymous SNV ENSMUST00000079553:c.A857T:p.Q286L 15qC NA NA chr15 50663452 CCTxGGC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.639957 0.641347 0.997832 48 0 0 16.303357 0.25 0.02 -0.245538 21 7 587 198 60 60 0 0 TT 4.8123 16 0 440 0 KEEP - Trps1 YES AA_5 chr15 54890434 54890434 G A exonic Taf2 synonymous SNV NM_001081288:c.C1011T:p.D337D exonic Taf2 synonymous SNV uc007vrv.1:c.C504T:p.D168D exonic ENSMUSG00000037343 synonymous SNV ENSMUST00000041733:c.C1011T:p.D337D 15qD1 NA NA chr15 54890434 CTCxTCT G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926639 0.92664 0.999999 90 2 0 47.26575 0.422222 0.02 -0.394191 26 19 648 515 60 60 0 0 GG 10.816809 36 0 913 0 KEEP - Taf2 NO AA_5 chr15 66623754 66623754 T A intronic "Sla,Tg" NA NA intronic "Sla,Tg" NA NA intronic "ENSMUSG00000022372,ENSMUSG00000053469" NA NA 15qD2 NA NA chr15 66623754 TCAxGGC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 102 0 0 11.858267 0.136364 0.02 -0.38579 38 6 1024 166 60 60 0 0 TT 14.735306 49 0 1312 0 KEEP + Sla YES AA_5 chr15 66945260 66945260 G A exonic St3gal1 nonsynonymous SNV NM_009177:c.C106T:p.P36S exonic St3gal1 nonsynonymous SNV uc007wba.1:c.C106T:p.P36S exonic ENSMUSG00000013846 nonsynonymous SNV ENSMUST00000063460:c.C106T:p.P36S 15qD2 NA NA chr15 66945260 TGGxGAA G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 149 0 0 8.591094 0.065789 0.02 1.028786 71 5 1980 142 60 60 0 0 GG 17.433566 58 0 1598 0 KEEP - St3gal1 NO AA_5 chr15 75832460 75832460 T A exonic Fam83h nonsynonymous SNV NM_001168253:c.A3457T:p.M1153L exonic Fam83h nonsynonymous SNV uc007wic.2:c.A3457T:p.M1153L exonic ENSMUSG00000046761 nonsynonymous SNV ENSMUST00000060807:c.A3457T:p.M1153L 15qD3 NA NA chr15 75832460 CCAxGCG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 118 0 0 34.366156 0.241935 0.02 1.151774 47 15 1252 421 60 60 0 0 TT 11.903987 40 0 1018 0 KEEP - Fam83h YES AA_5 chr15 76078942 76078942 G T exonic Grina nonsynonymous SNV NM_023168:c.G478T:p.V160F exonic Grina nonsynonymous SNV uc007wjl.1:c.G478T:p.V160F exonic ENSMUSG00000022564 nonsynonymous SNV ENSMUST00000023225:c.G478T:p.V160F 15qD3 NA NA chr15 76078942 TTTxTTG G T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 236 0 0 9.219521 0.049587 0.02 2.133688 115 6 3194 167 60 60 0 0 GG 25.265905 84 0 2357 0 KEEP + Grina NO AA_5 chr15 8138560 8138560 G T exonic 2410089E03Rik nonsynonymous SNV NM_001162906:c.G2453T:p.S818I exonic 2410089E03Rik nonsynonymous SNV uc007ven.2:c.G2453T:p.S818I exonic ENSMUSG00000039801 nonsynonymous SNV ENSMUST00000110617:c.G2453T:p.S818I 15qA1 NA NA chr15 8138560 ATAxCTT G T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.6681 0.668523 0.999366 53 0 0 7.959782 0.137931 0.02 -0.254311 25 4 706 111 60 60 0 0 GG 5.101735 17 0 456 0 KEEP + 2410089E03Rik NO AA_5 chr15 8586291 8586291 T G exonic Slc1a3 synonymous SNV NM_148938:c.A1473C:p.A491A exonic Slc1a3 synonymous SNV uc007vex.1:c.A945C:p.A315A exonic ENSMUSG00000005360 synonymous SNV ENSMUST00000005493:c.A1473C:p.A491A 15qA1 NA NA chr15 8586291 CCCxGCT T G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 133 0 0 36.131953 0.276923 0.02 1.125381 47 18 1319 442 60 60 0 0 TT 13.497023 45 0 1189 0 KEEP - Slc1a3 NO AA_5 chr16 10568454 10568454 A T intronic Clec16a NA NA ncRNA_intronic mKIAA0350 NA NA intronic ENSMUSG00000068663 NA NA 16qA1 NA NA chr16 10568454 TGCxCTT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 59 0 0 11.781476 0.238095 0.02 -0.184134 16 5 437 144 60 60 0 0 AA 9.322698 31 0 835 0 KEEP + Clec16a YES AA_5 chr16 16887983 16887983 C G exonic Top3b nonsynonymous SNV NM_011624:c.C1410G:p.C470W exonic Top3b nonsynonymous SNV uc007yjl.1:c.C585G:p.C195W exonic ENSMUSG00000022779 nonsynonymous SNV ENSMUST00000023465:c.C1410G:p.C470W 16qA3 NA NA chr16 16887983 GTGxCAG C G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 83 4 0 9.675067 0.111111 0.02 -0.394605 40 5 1116 141 60 60 0 0 CC 9.323018 31 0 849 0 KEEP + Top3b NO AA_5 chr16 20594739 20594739 T A exonic Vwa5b2 stopgain SNV NM_001144953:c.T630A:p.C210X exonic Vwa5b2 stopgain SNV uc007yqb.1:c.T630A:p.C210X exonic ENSMUSG00000046613 stopgain SNV ENSMUST00000159780:c.T630A:p.C210X 16qA3 NA NA chr16 20594739 CTGxCCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 95 0 0 19.548039 0.230769 0.02 -0.341941 30 9 817 244 60 60 0 0 TT 13.508071 45 0 1212 0 KEEP + Vwa5b2 YES AA_5 chr16 22610897 22610897 A T exonic Dgkg synonymous SNV NM_138650:c.T99A:p.A33A exonic Dgkg synonymous SNV uc007ysg.2:c.T99A:p.A33A exonic ENSMUSG00000022861 synonymous SNV ENSMUST00000023578:c.T99A:p.A33A 16qB1 NA NA chr16 22610897 CTCxGCC A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 92 2 0 30.043164 0.352941 0.02 -0.297975 22 12 614 339 60 60 0 0 AA 13.83591 46 0 1275 0 KEEP - Dgkg YES AA_5 chr16 32986844 32986844 A T exonic Lrch3 nonsynonymous SNV NM_001081255:c.A1400T:p.E467V exonic Lrch3 nonsynonymous SNV uc007yzr.1:c.A1400T:p.E467V exonic ENSMUSG00000022801 nonsynonymous SNV ENSMUST00000165826:c.A269T:p.E90V 16qB3 NA NA chr16 32986844 TGGxGCT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 50 0 0 6.382365 0.230769 0.02 -0.114002 10 3 288 80 60 60 0 0 AA 9.616381 32 0 885 0 KEEP + Lrch3 YES AA_5 chr16 38585365 38585365 C T exonic Tmem39a stopgain SNV NM_001205286:c.C652T:p.Q218X exonic Tmem39a stopgain SNV uc007zfe.1:c.C652T:p.Q218X exonic ENSMUSG00000002845 stopgain SNV ENSMUST00000163948:c.C190T:p.Q64X 16qB4 NA NA chr16 38585365 GTTxAGC C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 128 1 0 79.585635 0.535714 0.02 1.205675 26 30 706 820 60 60 0 0 CC 16.540226 55 0 1571 0 KEEP + Tmem39a NO AA_5 chr16 43618799 43618799 A G exonic Zbtb20 nonsynonymous SNV NM_181058:c.A1949G:p.K650R exonic Zbtb20 nonsynonymous SNV uc007zge.2:c.A1949G:p.K650R exonic ENSMUSG00000022708 nonsynonymous SNV ENSMUST00000114690:c.A1949G:p.K650R 16qB4 NA NA chr16 43618799 CAAxGTT A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 141 0 0 43.763149 0.425 0.02 -0.350765 23 17 648 475 60 60 0 0 AA 22.857148 76 0 2097 0 KEEP + Zbtb20 NO AA_5 chr16 44833560 44833560 C G exonic Cd200r4 nonsynonymous SNV NM_207244:c.C606G:p.H202Q exonic Cd200r4 nonsynonymous SNV uc007zhu.1:c.C606G:p.H202Q exonic ENSMUSG00000062082 nonsynonymous SNV ENSMUST00000114626:c.C606G:p.H202Q 16qB4 "Score=0.911732;Name=No.61913,chr16:44787057" NA chr16 44833560 CCAxTGG C G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 76 0 0 36.468961 0.384615 0.02 -0.341986 24 15 678 406 60 60 0 0 CC 8.722206 29 0 808 0 KEEP + Cd200r4 NO AA_5 chr16 57047116 57047116 A T exonic 2310005G13Rik nonsynonymous SNV NM_183281:c.T334A:p.Y112N exonic 2310005G13Rik nonsynonymous SNV uc012agt.1:c.T334A:p.Y112N exonic ENSMUSG00000046748 nonsynonymous SNV ENSMUST00000067173:c.T334A:p.Y112N 16qC1.1 NA NA chr16 57047116 CGTxCAT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 74 0 0 10.955421 0.2 0.02 -0.219184 20 5 537 140 60 60 0 0 AA 11.119627 37 0 981 0 KEEP - 2310005G13Rik YES AA_5 chr17 18242381 18242381 T C exonic Vmn2r91 nonsynonymous SNV NM_001104540:c.T296C:p.L99P exonic Vmn2r91 nonsynonymous SNV uc009vav.1:c.T296C:p.L99P exonic ENSMUSG00000091206 nonsynonymous SNV ENSMUST00000172359:c.T296C:p.L99P 17qA3.2 "Score=0.959258;Name=No.65444,chr17:18273607" NA chr17 18242381 ATCxTTT T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 343 0 0 9.473426 0.04878 0.02 2.303032 117 6 3315 170 60 60 0 0 TT 50.20493 167 0 4645 0 KEEP + Vmn2r91 NO AA_5 chr17 33720656 33720656 T A exonic Myo1f synonymous SNV NM_053214:c.T1128A:p.P376P exonic Myo1f synonymous SNV uc008byv.2:c.T12A:p.P4P exonic ENSMUSG00000024300 synonymous SNV ENSMUST00000087605:c.T1128A:p.P376P 17qB1 NA NA chr17 33720656 GCCxCAG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 315 3 0 10.950249 0.056 0.02 2.19642 118 7 3356 193 60 60 0 0 TT 42.062597 140 0 3837 0 KEEP + Myo1f YES AA_5 chr17 35773739 35773739 G A UTR3 Dpcr1 NA NA UTR3 Dpcr1 NA NA UTR3 ENSMUSG00000073408 NA NA 17qB1 NA NA chr17 35773739 AAGxGGC G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941612 0.941741 0.999863 77 0 0 42.853019 0.361702 0.02 -0.412159 30 17 848 481 60 60 0 0 GG 6.01611 20 0 563 0 KEEP - Dpcr1 NO AA_5 chr17 35821260 35821260 T C splicing "Ddr1(NM_172962:exon15:c.1881-2A>G,NM_001198833:exon16:c.1992-2A>G,NM_007584:exon16:c.1992-2A>G,NM_001198831:exon16:c.1992-2A>G)" NA NA splicing "Ddr1(uc008cih.2:exon16:c.1992-2A>G,uc008cii.2:exon14:c.1068-2A>G,uc008cij.2:exon16:c.1992-2A>G,uc008cik.1:exon16:c.1992-2A>G,uc008cil.1:exon15:c.1881-2A>G,uc008cim.1:exon17:c.1992-2A>G)" NA NA splicing "ENSMUSG00000003534(ENSMUST00000117301:exon17:c.1992-2A>G,ENSMUST00000119825:exon16:c.1992-2A>G,ENSMUST00000003628:exon16:c.1992-2A>G,ENSMUST00000097333:exon15:c.1881-2A>G,ENSMUST00000155957:exon14:c.1778-2A>G)" NA NA 17qB1 NA NA chr17 35821260 TCCxGGA T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053742 0.054137 0.992708 20 0 0 15.399861 0.75 0.02 -0.070101 2 6 56 145 60 60 0 0 TT 2.705982 9 0 237 0 KEEP - Ddr1 NO AA_5 chr17 36807338 36807338 T A exonic H2-M1 nonsynonymous SNV NM_177636:c.A749T:p.D250V exonic H2-M1 nonsynonymous SNV uc008cld.1:c.A749T:p.D250V exonic ENSMUSG00000037334 nonsynonymous SNV ENSMUST00000041662:c.A749T:p.D250V 17qB1 NA NA chr17 36807338 ATGxCCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 145 2 0 8.34245 0.073529 0.02 1.001124 63 5 1738 137 60 60 0 0 TT 17.74147 59 0 1606 0 KEEP - H2-M1 YES AA_5 chr17 37942682 37942682 T G exonic Olfr124 synonymous SNV NM_147062:c.T591G:p.A197A exonic Olfr124 synonymous SNV uc008cnp.2:c.T591G:p.A197A exonic ENSMUSG00000044985 synonymous SNV ENSMUST00000053599:c.T591G:p.A197A 17qB1 NA NA chr17 37942682 AGCxGAG T G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 97 0 0 6.569103 0.08 0.02 -0.438457 46 4 1299 107 60 60 0 0 TT 11.730101 39 0 1075 0 KEEP + Olfr124 NO AA_5 chr17 56245742 56245742 G A exonic Plin4 synonymous SNV NM_020568:c.C1305T:p.L435L exonic Plin4 synonymous SNV uc008day.2:c.C1305T:p.L435L exonic ENSMUSG00000002831 synonymous SNV ENSMUST00000002908:c.C1305T:p.L435L 17qD "Score=0.932931;Name=No.65827,chr17:56243513" NA chr17 56245742 TGTxAGC G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 490 6 227 47.73411 0.192982 0.02 2.391768 92 22 2595 615 57 40 0 0 GG 65.5639 218 0 6225 0 KEEP - Plin4 NO AA_5 chr17 57343576 57343576 T A exonic C3 nonsynonymous SNV NM_009778:c.A4852T:p.T1618S exonic C3 nonsynonymous SNV uc008deg.1:c.A4852T:p.T1618S exonic ENSMUSG00000024164 nonsynonymous SNV ENSMUST00000024988:c.A4852T:p.T1618S 17qD NA NA chr17 57343576 TGGxGCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 80 0 0 14.998573 0.155556 0.02 -0.394524 38 7 1016 201 60 60 0 0 TT 7.957482 30 1 769 9 KEEP - C3 YES AA_5 chr17 87824968 87824968 T A intronic 1700011E24Rik NA NA intronic 1700011E24Rik NA NA intronic ENSMUSG00000036557 NA NA 17qE4 NA NA chr17 87824968 GAGxGAG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 118 4 0 46.235004 0.327586 0.02 1.28499 39 19 1061 531 60 60 0 0 TT 11.124051 37 0 976 0 KEEP - 1700011E24Rik YES AA_5 chr18 35812583 35812583 A T exonic Prob1 nonsynonymous SNV NM_001270646:c.T2271A:p.D757E intergenic "2010001M09Rik(dist=3562),Spata24(dist=3760)" NA NA exonic ENSMUSG00000073600 nonsynonymous SNV ENSMUST00000097619:c.T2259A:p.D753E 18qB2 NA NA chr18 35812583 AGCxTCC A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 143 0 0 15.685237 0.119403 0.02 1.099538 59 8 1607 225 60 60 0 0 AA 16.221291 54 0 1406 0 KEEP NA Prob1 YES AA_5 chr18 36848894 36848894 T A exonic E230025N22Rik nonsynonymous SNV NM_172831:c.A469T:p.S157C exonic E230025N22Rik nonsynonymous SNV uc008eoe.1:c.A469T:p.S157C exonic ENSMUSG00000044719 nonsynonymous SNV ENSMUST00000115682:c.A469T:p.S157C 18qB2 NA NA chr18 36848894 AGCxACC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.999859 42 0 0 22.896836 0.666667 0.02 -0.210435 4 8 115 224 60 70 0 0 TT 5.412033 18 0 473 0 KEEP - E230025N22Rik YES AA_5 chr18 37851674 37851674 A G exonic Pcdhgb2 nonsynonymous SNV NM_033575:c.A2063G:p.Q688R exonic Pcdhgb2 nonsynonymous SNV uc008eqq.1:c.A2063G:p.Q688R intronic ENSMUSG00000023036 NA NA 18qB3 NA NA chr18 37851674 TTCxGTT A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 166 0 20 14.914989 0.12987 0.02 0.922422 67 10 1889 230 60 60 0 0 AA 19.852042 66 0 1839 0 KEEP + Pcdhgb2 NO AA_5 chr18 40690548 40690548 A T exonic Kctd16 nonsynonymous SNV NM_026135:c.A1075T:p.R359W exonic Kctd16 nonsynonymous SNV uc012bch.1:c.A1075T:p.R359W exonic ENSMUSG00000051401 nonsynonymous SNV ENSMUST00000091927:c.A1075T:p.R359W 18qB3 NA NA chr18 40690548 ATGxGGC A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.320398 0.322807 0.99254 30 0 0 11.5676 0.277778 0.02 -0.157836 13 5 365 138 60 60 0 0 AA 2.70719 9 0 252 0 KEEP + Kctd16 YES AA_5 chr18 70627021 70627021 T A exonic 4930503L19Rik synonymous SNV NM_172967:c.A1170T:p.A390A exonic 4930503L19Rik synonymous SNV uc008fod.1:c.A1170T:p.A390A exonic ENSMUSG00000044906 synonymous SNV ENSMUST00000067556:c.A1170T:p.A390A 18qE2 NA NA chr18 70627021 TTCxGCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 127 1 0 39.375217 0.428571 0.02 -0.306911 20 15 556 426 60 60 0 0 TT 19.249663 64 0 1769 0 KEEP - 4930503L19Rik YES AA_5 chr18 74900258 74900258 C A exonic Myo5b nonsynonymous SNV NM_201600:c.C4500A:p.N1500K exonic Myo5b nonsynonymous SNV uc008fps.1:c.C300A:p.N100K exonic ENSMUSG00000025885 nonsynonymous SNV ENSMUST00000091844:c.C1242A:p.N414K 18qE2 NA NA chr18 74900258 CAAxGGC C A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 277 4 0 14.056831 0.089888 0.02 0.915641 81 8 1998 219 60 60 0 0 CC 42.056187 140 0 3506 0 KEEP + Myo5b NO AA_5 chr19 10101128 10101128 A T exonic Rab3il1 synonymous SNV NM_144538:c.A120T:p.V40V exonic Rab3il1 synonymous SNV uc008gow.1:c.A120T:p.V40V exonic ENSMUSG00000024663 synonymous SNV ENSMUST00000113161:c.A120T:p.V40V 19qA NA NA chr19 10101128 GGTxGAA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.999859 48 0 0 21.593575 0.310345 0.02 -0.25431 20 9 567 251 60 60 0 0 AA 5.414368 18 0 504 0 KEEP + Rab3il1 YES AA_5 chr19 31158923 31158923 C G exonic Cstf2t synonymous SNV NM_031249:c.C1368G:p.G456G exonic Cstf2t synonymous SNV uc008her.1:c.C1368G:p.G456G exonic ENSMUSG00000053536 synonymous SNV ENSMUST00000066039:c.C1368G:p.G456G 19qC1 NA NA chr19 31158923 AGGxATG C G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.384517 0.387407 0.99254 28 0 0 8.452125 0.75 0.02 -0.175378 1 3 30 80 60 60 0 0 CC 2.70711 9 0 252 0 KEEP + Cstf2t NO AA_5 chr19 37465331 37465331 A T exonic Kif11 nonsynonymous SNV NM_010615:c.A979T:p.T327S exonic Kif11 nonsynonymous SNV uc008hin.1:c.A979T:p.T327S exonic ENSMUSG00000012443 nonsynonymous SNV ENSMUST00000012587:c.A979T:p.T327S 19qC2 NA NA chr19 37465331 CGTxCAA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.83568 0.835716 0.999957 71 0 0 17.838424 0.222222 0.02 -0.32443 28 8 761 223 60 60 0 0 AA 7.817489 26 0 687 0 KEEP + Kif11 YES AA_5 chr19 38825043 38825043 T A exonic Plce1 nonsynonymous SNV NM_019588:c.T4973A:p.F1658Y exonic Plce1 nonsynonymous SNV uc008hjq.1:c.T1523A:p.F508Y exonic ENSMUSG00000024998 nonsynonymous SNV ENSMUST00000169713:c.T4973A:p.F1658Y 19qC3 NA NA chr19 38825043 AATxTCC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 74 0 0 10.183254 0.178571 0.02 -0.24553 23 5 643 135 60 60 0 0 TT 9.925656 33 0 915 0 KEEP + Plce1 YES AA_5 chr19 39717802 39717802 T A exonic Cyp2c67 nonsynonymous SNV NM_001024719:c.A440T:p.E147V exonic Cyp2c67 nonsynonymous SNV uc008hkc.1:c.A440T:p.E147V exonic ENSMUSG00000062624 nonsynonymous SNV ENSMUST00000067328:c.A440T:p.E147V 19qC3 "Score=0.934253;Name=No.72686,chr19:39839841" NA chr19 39717802 TCCxCTT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 313 19 6 9.278122 0.052632 0.02 1.975743 108 6 3064 166 60 60 0 0 TT 44.516364 148 0 4133 0 KEEP - Cyp2c67 YES AA_5 chr19 45110647 45110647 T A exonic Pdzd7 synonymous SNV NM_001195265:c.A1422T:p.G474G exonic Pdzd7 synonymous SNV uc012bmk.1:c.A1422T:p.G474G exonic ENSMUSG00000074818 synonymous SNV ENSMUST00000076452:c.A1422T:p.G474G 19qC3 NA NA chr19 45110647 CCCxCCC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 253 0 0 51.686596 0.266667 0.02 0.906144 66 24 1855 629 60 60 0 0 TT 40.219316 134 0 3652 0 KEEP - Pdzd7 YES AA_5 chr19 56645126 56645126 A T exonic Nhlrc2 nonsynonymous SNV NM_025811:c.A552T:p.R184S exonic Nhlrc2 nonsynonymous SNV uc008hzc.1:c.A552T:p.R184S exonic ENSMUSG00000025078 nonsynonymous SNV ENSMUST00000071423:c.A552T:p.R184S 19qD2 NA NA chr19 56645126 CAGxGAT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 65 0 0 36.4532 0.4375 0.02 -0.28062 18 14 510 393 60 60 0 0 AA 8.421261 28 0 775 0 KEEP + Nhlrc2 YES AA_5 chr19 7358966 7358966 T A exonic Mark2 stopgain SNV NM_001080388:c.A1090T:p.K364X exonic Mark2 stopgain SNV uc008gkq.1:c.A991T:p.K331X exonic ENSMUSG00000024969 stopgain SNV ENSMUST00000025921:c.A991T:p.K331X 19qA NA NA chr19 7358966 TCTxGTA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 132 0 0 13.484111 0.112676 0.02 1.072741 63 8 1738 205 60 60 0 0 TT 14.710017 49 0 1321 0 KEEP - Mark2 YES AA_5 chr1 108892545 108892545 A T intronic Serpinb13 NA NA intronic Serpinb13 NA NA intronic ENSMUSG00000048775 NA NA 1qE2.1 NA NA chr1 108892545 GCCxGTA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.99986 45 0 0 14.064991 0.272727 0.02 -0.192933 16 6 459 168 60 60 0 0 AA 5.714745 19 0 525 0 KEEP + Serpinb13 YES AA_5 chr1 129342937 129342937 G A exonic Mgat5 nonsynonymous SNV NM_145128:c.G1496A:p.R499H exonic Mgat5 nonsynonymous SNV uc007cks.1:c.G1052A:p.R351H exonic ENSMUSG00000036155 nonsynonymous SNV ENSMUST00000171405:c.G1496A:p.R499H 1qE3 NA NA chr1 129342937 GACxTGA G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 79 0 0 12.17269 0.181818 0.02 -0.289278 27 6 704 161 60 60 0 0 GG 10.520857 35 0 904 0 KEEP + Mgat5 NO AA_5 chr1 129662847 129662847 T A ncRNA_intronic 2900009J06Rik NA NA ncRNA_intronic AK013506 NA NA intronic ENSMUSG00000026348 NA NA 1qE3 NA NA chr1 129662847 CTCxCTT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 99 0 0 27.630405 0.387097 0.02 -0.27174 19 12 542 309 60 70 0 0 TT 15.039816 50 0 1401 0 KEEP + 2900009J06Rik YES AA_5 chr1 129839207 129839207 A T UTR3 Rab3gap1 NA NA UTR3 Rab3gap1 NA NA UTR3 ENSMUSG00000036104 NA NA 1qE4 NA NA chr1 129839207 GGCxGCT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 187 0 0 12.808188 0.078652 0.02 1.013548 82 7 2258 201 60 60 0 0 AA 20.087729 67 0 1804 0 KEEP + Rab3gap1 YES AA_5 chr1 135811067 135811067 T A exonic Prelp nonsynonymous SNV NM_054077:c.A916T:p.S306C exonic Prelp nonsynonymous SNV uc007crc.2:c.A916T:p.S306C exonic ENSMUSG00000041577 nonsynonymous SNV ENSMUST00000048432:c.A916T:p.S306C 1qE4 NA NA chr1 135811067 TGCxGAT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 199 0 0 11.516741 0.078652 0.02 0.91477 82 7 2316 188 60 60 0 0 TT 24.96493 83 0 2304 0 KEEP - Prelp YES AA_5 chr1 175207843 175207843 A T exonic Mptx2 nonsynonymous SNV NM_001205011:c.T11A:p.L4H intergenic "Olfr418-ps1(dist=6575),Darc(dist=54174)" NA NA exonic ENSMUSG00000079180 nonsynonymous SNV ENSMUST00000111224:c.T11A:p.L4H 1qH3 "Score=0.924049;Name=No.494,chr1:176254198" NA chr1 175207843 ATAxGCT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 79 2 0 10.166587 0.15625 0.02 -0.280622 27 5 766 138 60 60 0 0 AA 9.022833 30 0 831 0 KEEP NA Mptx2 YES AA_5 chr1 99024491 99024491 T A exonic Slco6c1 synonymous SNV NM_028942:c.A261T:p.V87V exonic Slco6c1 synonymous SNV uc007cff.1:c.A261T:p.V87V exonic ENSMUSG00000026331 synonymous SNV ENSMUST00000027569:c.A261T:p.V87V 1qD NA NA chr1 99024491 CTGxACA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 73 0 0 30.447141 0.325 0.02 -0.350663 27 13 722 352 60 60 0 0 TT 8.420269 28 0 751 0 KEEP - Slco6c1 YES AA_5 chr2 119605901 119605901 T A exonic Rpap1 synonymous SNV NM_001163701:c.A432T:p.A144A exonic Rpap1 synonymous SNV uc008lul.2:c.A432T:p.A144A exonic ENSMUSG00000034032 synonymous SNV ENSMUST00000048493:c.A432T:p.A144A 2qE5 NA NA chr2 119605901 TGCxGCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 122 1 0 42.161834 0.257143 0.02 1.170901 52 18 1472 509 60 60 0 0 TT 12.030534 40 0 1099 0 KEEP - Rpap1 YES AA_5 chr2 124991224 124991224 A T intronic Slc12a1 NA NA intronic Slc12a1 NA NA intronic ENSMUSG00000027202 NA NA 2qF1 NA NA chr2 124991224 CTCxACT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 45 0 0 22.999579 0.36 0.02 -0.219237 16 9 449 258 60 60 0 0 AA 5.111191 17 0 455 0 KEEP + Slc12a1 YES AA_5 chr2 126967011 126967011 T G exonic Itpripl1 nonsynonymous SNV NM_001163527:c.A926C:p.K309T exonic Itpripl1 nonsynonymous SNV uc008mev.2:c.A926C:p.K309T exonic ENSMUSG00000074825 nonsynonymous SNV ENSMUST00000110386:c.A926C:p.K309T 2qF1 NA NA chr2 126967011 GTCxTAC T G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 115 0 0 15.370668 0.132353 0.02 1.001104 59 9 1652 226 60 60 0 0 TT 13.229508 44 0 1201 0 KEEP - Itpripl1 NO AA_5 chr2 146580931 146580931 C T intergenic "4933406D12Rik(dist=209087),Plk1s1(dist=100694)" NA NA intergenic "Ralgapa2(dist=243191),Plk1s1(dist=100694)" NA NA ncRNA_exonic ENSMUSG00000080870 NA NA 2qG1 "Score=0.960388;Name=No.79860,chr8:95239649" NA chr2 146580931 CCAxGAT C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 381 9 0 57.981665 0.287356 0.02 0.817546 62 25 1504 687 60 60 0 0 CC 71.821143 239 0 6004 0 KEEP NA 4933406D12Rik NO AA_5 chr2 153993030 153993030 T A exonic Bpifa5 nonsynonymous SNV NM_025990:c.T755A:p.L252Q exonic 2310021H06Rik nonsynonymous SNV uc008niv.2:c.T755A:p.L252Q exonic ENSMUSG00000027484 nonsynonymous SNV ENSMUST00000028986:c.T755A:p.L252Q 2qH1 NA NA chr2 153993030 CCCxAGC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 382 0 0 96.821968 0.25 0.02 3.479617 129 43 3554 1183 60 60 0 0 TT 45.101645 150 0 4063 0 KEEP + Bpifa5 YES AA_5 chr2 156763104 156763104 A C exonic Ndrg3 nonsynonymous SNV NM_013865:c.T769G:p.L257V exonic Ndrg3 nonsynonymous SNV uc008nof.2:c.T769G:p.L257V exonic ENSMUSG00000027634 nonsynonymous SNV ENSMUST00000069600:c.T769G:p.L257V 2qH1 NA NA chr2 156763104 GTAxGGT A C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 117 2 1 28.954343 0.288889 0.02 -0.394593 32 13 909 345 60 60 0 0 AA 13.533876 45 0 1255 0 KEEP - Ndrg3 NO AA_5 chr2 161359344 161359344 A G exonic Ptprt nonsynonymous SNV NM_021464:c.T3991C:p.Y1331H exonic Ptprt nonsynonymous SNV uc008nru.1:c.T1618C:p.Y540H exonic ENSMUSG00000053141 nonsynonymous SNV ENSMUST00000109445:c.T3991C:p.Y1331H 2qH2 NA NA chr2 161359344 TGTxCTG A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 193 0 0 116.42365 0.442308 0.02 2.66676 58 46 1538 1255 60 60 0 0 AA 21.944642 73 0 1903 0 KEEP - Ptprt NO AA_5 chr2 164827423 164827423 T A exonic Ncoa5 nonsynonymous SNV NM_144892:c.A1399T:p.T467S exonic Ncoa5 nonsynonymous SNV uc008nww.1:c.A559T:p.T187S exonic ENSMUSG00000039804 nonsynonymous SNV ENSMUST00000121377:c.A559T:p.T187S 2qH3 NA NA chr2 164827423 CTGxGGA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 251 2 0 8.702349 0.042254 0.02 2.040064 136 6 3671 166 60 60 0 0 TT 24.652295 82 0 2177 0 KEEP - Ncoa5 YES AA_5 chr2 167127568 167127568 T A exonic B4galt5 nonsynonymous SNV NM_019835:c.A961T:p.T321S exonic B4galt5 nonsynonymous SNV uc008nzm.1:c.A961T:p.T321S exonic ENSMUSG00000017929 nonsynonymous SNV ENSMUST00000109221:c.A961T:p.T321S 2qH3 NA NA chr2 167127568 CTGxGTC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 145 0 0 9.336502 0.087719 0.02 1.19541 52 5 1431 143 60 60 0 0 TT 19.245847 64 0 1715 0 KEEP - B4galt5 YES AA_5 chr2 23177016 23177016 T A exonic Nxph2 stopgain SNV NM_008752:c.T8A:p.L3X exonic Nxph2 stopgain SNV uc008iog.1:c.T8A:p.L3X exonic ENSMUSG00000069132 stopgain SNV ENSMUST00000102945:c.T8A:p.L3X 2qA3 NA NA chr2 23177016 GCTxGCG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 217 0 0 11.761273 0.066038 0.02 2.460946 99 7 2749 196 60 60 0 0 TT 22.831594 76 0 2060 0 KEEP + Nxph2 YES AA_5 chr2 26136451 26136451 T A exonic 4932418E24Rik nonsynonymous SNV NM_177841:c.A1534T:p.S512C exonic 4932418E24Rik nonsynonymous SNV uc008ium.1:c.A1534T:p.S512C exonic ENSMUSG00000048038 nonsynonymous SNV ENSMUST00000057224:c.A1534T:p.S512C 2qA3 NA NA chr2 26136451 GACxGGG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999997 95 0 0 27.406828 0.222222 0.02 1.221679 42 12 1181 341 60 60 0 0 TT 9.624731 32 0 882 0 KEEP - 4932418E24Rik YES AA_5 chr2 26232200 26232200 T A exonic Snapc4 stopgain SNV NM_172339:c.A391T:p.K131X exonic Snapc4 stopgain SNV uc008iuv.2:c.A391T:p.K131X exonic ENSMUSG00000036281 stopgain SNV ENSMUST00000035427:c.A391T:p.K131X 2qA3 NA NA chr2 26232200 CCTxCAC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 140 0 0 59.03449 0.347222 0.02 1.063873 47 25 1323 673 60 60 0 0 TT 16.842581 56 0 1540 0 KEEP - Snapc4 YES AA_5 chr2 26254911 26254911 T A intronic Inpp5e NA NA intronic Inpp5e NA NA intronic ENSMUSG00000026925 NA NA 2qA3 NA NA chr2 26254911 AGGxGCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 161 0 0 8.240263 0.05618 0.02 0.914908 84 5 2280 142 60 60 0 0 TT 15.020481 50 0 1306 0 KEEP - Inpp5e YES AA_5 chr2 31239250 31239250 A T intergenic "Ncs1(dist=88259),Ass1(dist=86540)" NA NA intergenic "Ncs1(dist=88259),Hmcn2(dist=54332)" NA NA exonic ENSMUSG00000055632 nonsynonymous SNV ENSMUST00000113532:c.A4093T:p.I1365L 2qB NA NA chr2 31239250 GACxTAA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.758216 0.760887 0.99649 55 0 0 21.798072 0.272727 0.02 -0.289381 24 9 664 259 60 60 0 0 AA 4.510925 15 0 403 0 KEEP NA Ncs1 YES AA_5 chr2 31656944 31656944 G A exonic Abl1 nonsynonymous SNV NM_001112703:c.G2954A:p.G985E exonic Abl1 nonsynonymous SNV uc008jeb.2:c.G2954A:p.G985E exonic ENSMUSG00000026842 nonsynonymous SNV ENSMUST00000028190:c.G2897A:p.G966E 2qB NA NA chr2 31656944 CAGxGAC G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 145 0 0 86.551839 0.445946 0.02 1.144616 41 33 1144 929 60 60 0 0 GG 16.484332 55 0 1488 0 KEEP + Abl1 NO AA_5 chr2 31800781 31800781 A T exonic Lamc3 synonymous SNV NM_011836:c.A4593T:p.G1531G exonic Lamc3 synonymous SNV uc008jef.1:c.A4593T:p.G1531G exonic ENSMUSG00000026840 synonymous SNV ENSMUST00000028187:c.A4593T:p.G1531G 2qB NA NA chr2 31800781 CGGxGCC A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888759 0.888875 0.999869 69 0 0 34.466025 0.341463 0.02 -0.358808 27 14 745 392 60 60 0 0 AA 6.316769 21 0 588 0 KEEP + Lamc3 YES AA_5 chr2 67957617 67957617 A T UTR3 B3galt1 NA NA UTR3 B3galt1 NA NA UTR3 ENSMUSG00000034780 NA NA 2qC1.3 NA NA chr2 67957617 GTCxGCA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 131 0 0 8.975648 0.078125 0.02 1.134004 59 5 1672 142 60 60 0 0 AA 16.542373 55 0 1524 0 KEEP + B3galt1 YES AA_5 chr2 69340633 69340633 T C exonic Lrp2 synonymous SNV NM_001081088:c.A4596G:p.E1532E exonic Lrp2 synonymous SNV uc008jyc.1:c.A4596G:p.E1532E exonic ENSMUSG00000027070 synonymous SNV ENSMUST00000080953:c.A4596G:p.E1532E 2qC2 NA NA chr2 69340633 TGTxTCA T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 171 0 0 19.749501 0.111111 0.02 0.906072 80 10 2222 286 60 60 0 0 TT 18.344425 61 0 1688 0 KEEP - Lrp2 NO AA_5 chr2 69375992 69375992 A T intronic Lrp2 NA NA intronic Lrp2 NA NA intronic ENSMUSG00000027070 NA NA 2qC2 NA NA chr2 69375992 TTTxAAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 82 0 0 42.122571 0.470588 0.02 -0.29812 18 16 483 447 60 60 0 0 AA 10.521499 35 0 937 0 KEEP - Lrp2 YES AA_5 chr2 76736136 76736136 A T exonic Ttn synonymous SNV NM_011652:c.T14010A:p.A4670A exonic Ttn synonymous SNV uc008kfn.1:c.T14010A:p.A4670A exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000134720:c.T3987A:p.A1329A 2qC3 NA NA chr2 76736136 GCTxGCC A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739592 0.739671 0.999892 58 0 0 12.959968 0.1875 0.02 -0.280561 26 6 690 168 60 60 0 0 AA 6.916761 23 0 620 0 KEEP - Ttn YES AA_5 chr2 85925934 85925934 T C UTR5 Olfr1037 NA NA UTR5 Olfr1037 NA NA UTR5 ENSMUSG00000075205 NA NA 2qD "Score=0.945898;Name=No.75234,chr2:85882583" NA chr2 85925934 ATTxCAT T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 71 0 0 8.164273 0.117647 0.02 -0.298158 30 4 843 116 60 60 0 0 TT 8.421623 28 0 774 0 KEEP - Olfr1037 NO AA_5 chr2 87643012 87643012 A T exonic Olfr1143 synonymous SNV NM_146293:c.A465T:p.V155V exonic Olfr1143 synonymous SNV uc008kor.1:c.A465T:p.V155V exonic ENSMUSG00000068815 synonymous SNV ENSMUST00000090708:c.A465T:p.V155V 2qD NA NA chr2 87643012 TGTxGGT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998157 0.9982 0.999957 106 0 0 67.708021 0.369863 0.02 1.046881 46 27 1224 757 60 60 0 0 AA 7.7492 26 0 657 0 KEEP + Olfr1143 YES AA_5 chr3 104645604 104645604 T A exonic Capza1 nonsynonymous SNV NM_009797:c.A130T:p.N44Y exonic Capza1 nonsynonymous SNV uc008quq.2:c.A130T:p.N44Y exonic ENSMUSG00000070372 nonsynonymous SNV ENSMUST00000094028:c.A130T:p.N44Y 3qF2.2 NA NA chr3 104645604 GATxGTC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260941 0.260965 0.999909 46 2 0 9.401928 0.25 0.02 -0.140307 12 4 335 114 60 60 0 0 TT 7.184014 24 0 639 0 KEEP - Capza1 YES AA_5 chr3 115827451 115827451 T C exonic Vcam1 nonsynonymous SNV NM_011693:c.A778G:p.R260G exonic Vcam1 nonsynonymous SNV uc008rbx.1:c.A778G:p.R260G exonic ENSMUSG00000027962 nonsynonymous SNV ENSMUST00000029574:c.A778G:p.R260G 3qG1 NA NA chr3 115827451 TCCxGCC T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 51 0 0 17.651929 0.380952 0.02 -0.184089 13 8 361 199 60 60 0 0 TT 8.721618 29 0 788 0 KEEP - Vcam1 NO AA_5 chr3 145855178 145855178 T A intronic Mcoln2 NA NA intronic Mcoln2 NA NA intronic ENSMUSG00000011008 NA NA 3qH2 NA NA chr3 145855178 GTCxGCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 78 0 0 22.02994 0.333333 0.02 -0.23677 18 9 511 252 60 60 0 0 TT 10.226921 34 0 948 0 KEEP + Mcoln2 YES AA_5 chr3 19478996 19478996 T A exonic Dnajc5b nonsynonymous SNV NM_001163536:c.T382A:p.C128S exonic Dnajc5b nonsynonymous SNV uc008orv.2:c.T382A:p.C128S exonic ENSMUSG00000027606 nonsynonymous SNV ENSMUST00000029132:c.T382A:p.C128S 3qA2 NA NA chr3 19478996 TGCxGCC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 358 0 0 100.446301 0.310606 0.02 2.429878 91 41 2555 1164 60 60 0 0 TT 51.413273 171 0 4697 0 KEEP + Dnajc5b YES AA_5 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94173 0.941741 0.999988 80 2 0 30.005093 0.295455 0.02 -0.412125 31 13 864 354 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO AA_5 chr3 38894986 38894986 C A exonic Fat4 nonsynonymous SNV NM_183221:c.C12074A:p.A4025E exonic Fat4 nonsynonymous SNV uc008pbf.1:c.C12074A:p.A4025E exonic ENSMUSG00000046743 nonsynonymous SNV ENSMUST00000061260:c.C12074A:p.A4025E 3qB NA NA chr3 38894986 GGGxAGA C A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 111 0 0 51.304407 0.411765 0.02 1.248092 30 21 837 563 60 60 0 0 CC 15.341998 51 0 1459 0 KEEP + Fat4 NO AA_5 chr3 38894987 38894987 A T exonic Fat4 synonymous SNV NM_183221:c.A12075T:p.A4025A exonic Fat4 synonymous SNV uc008pbf.1:c.A12075T:p.A4025A exonic ENSMUSG00000046743 synonymous SNV ENSMUST00000061260:c.A12075T:p.A4025A 3qB NA NA chr3 38894987 GGCxGAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 113 0 0 46.170019 0.384615 0.02 1.239593 32 20 898 517 60 60 0 0 AA 15.331159 51 0 1410 0 KEEP + Fat4 YES AA_5 chr3 63503385 63503385 T A exonic Plch1 stopgain SNV NM_183191:c.A3019T:p.R1007X exonic Plch1 stopgain SNV uc008pjv.2:c.A1312T:p.R438X exonic ENSMUSG00000036834 stopgain SNV ENSMUST00000048134:c.A2893T:p.R965X 3qE1 NA NA chr3 63503385 TTCxGTC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 105 2 0 15.006138 0.170732 0.02 -0.359538 34 7 957 198 60 60 0 0 TT 15.33882 51 0 1411 0 KEEP - Plch1 YES AA_5 chr3 82707266 82707266 T G exonic Lrat synonymous SNV NM_023624:c.A369C:p.L123L exonic Lrat synonymous SNV uc012cqv.1:c.A369C:p.L123L exonic ENSMUSG00000028003 synonymous SNV ENSMUST00000029632:c.A369C:p.L123L 3qE3 NA NA chr3 82707266 GACxAGG T G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 125 0 0 21.682753 0.244444 0.02 -0.394518 34 11 944 273 60 60 0 0 TT 17.443233 58 0 1584 0 KEEP - Lrat NO AA_5 chr3 88945576 88945576 T A intronic Pklr NA NA intronic Pklr NA NA intronic ENSMUSG00000041237 NA NA 3qF1 NA NA chr3 88945576 CTCxGTC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835658 0.835716 0.999931 66 0 0 20.481963 0.243243 0.02 -0.324432 28 9 779 251 60 60 0 0 TT 7.51884 25 0 682 0 KEEP + Pklr YES AA_5 chr3 90265368 90265368 T A exonic Npr1 stopgain SNV NM_008727:c.A1306T:p.R436X exonic Npr1 stopgain SNV uc008qcg.1:c.A1306T:p.R436X exonic ENSMUSG00000027931 stopgain SNV ENSMUST00000029540:c.A1306T:p.R436X 3qF1 NA NA chr3 90265368 ATCxGTG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 112 0 0 39.965258 0.333333 0.02 -0.4297 32 16 902 456 60 60 0 0 TT 14.436056 48 0 1325 0 KEEP - Npr1 YES AA_5 chr3 94748444 94748444 A C exonic Selenbp1 nonsynonymous SNV NM_009150:c.A1373C:p.E458A exonic Selenbp1 nonsynonymous SNV uc008qhf.1:c.A1373C:p.E458A exonic ENSMUSG00000068874 nonsynonymous SNV ENSMUST00000090839:c.A1373C:p.E458A 3qF2.1 "Score=0.960097;Name=No.81847,chr3:94480424" NA chr3 94748444 ACGxGCT A C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 217 1 24 10.621291 0.08642 0.02 0.8871 74 7 2082 176 60 60 0 0 AA 28.536691 95 0 2596 0 KEEP + Selenbp1 NO AA_5 chr4 115590644 115590644 A T exonic Dmbx1 nonsynonymous SNV NM_001025567:c.T1043A:p.L348Q exonic Dmbx1 nonsynonymous SNV uc008ufp.1:c.T1043A:p.L348Q exonic ENSMUSG00000028707 nonsynonymous SNV ENSMUST00000064806:c.T1043A:p.L348Q 4qD1 NA NA chr4 115590644 TTCxGGG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967424 0.967425 0.999999 92 0 0 9.3457 0.096154 0.02 1.337537 47 5 1320 141 60 60 0 0 AA 10.826783 36 0 982 0 KEEP - Dmbx1 YES AA_5 chr4 116623375 116623375 C T intronic Zswim5 NA NA intronic Zswim5 NA NA intronic ENSMUSG00000033948 NA NA 4qD1 NA NA chr4 116623375 GTGxATT C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.454342 0.457757 0.99254 35 0 0 10.666615 0.227273 0.02 -0.192911 17 5 473 134 60 60 0 0 CC 2.706999 9 0 250 0 KEEP + Zswim5 NO AA_5 chr4 116820721 116820721 T A intergenic "Plk3(dist=14164),Rps8(dist=5720)" NA NA intergenic "Plk3(dist=14164),Rps8(dist=5720)" NA NA ncRNA_intronic ENSMUSG00000033872 NA NA 4qD1 NA NA chr4 116820721 TTCxGCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 86 0 0 7.57927 0.095238 0.02 -0.36812 38 4 1059 114 60 60 0 0 TT 11.730343 39 0 1079 0 KEEP NA Plk3 YES AA_5 chr4 118035247 118035247 A G exonic Hyi unknown UNKNOWN exonic Hyi synonymous SNV uc008ujs.2:c.A498G:p.P166P exonic ENSMUSG00000006395 synonymous SNV ENSMUST00000106393:c.A498G:p.P166P 4qD2.1 NA NA chr4 118035247 CCCxCGG A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 221 0 0 9.624551 0.055556 0.02 2.249315 102 6 2650 168 60 60 0 0 AA 24.586588 82 0 2122 0 KEEP + Hyi NO AA_5 chr4 119143186 119143186 A T exonic Rimkla nonsynonymous SNV NM_177572:c.T571A:p.Y191N exonic Rimkla nonsynonymous SNV uc008umo.2:c.T571A:p.Y191N exonic ENSMUSG00000048899 nonsynonymous SNV ENSMUST00000049994:c.T571A:p.Y191N 4qD2.1 NA NA chr4 119143186 CATxCTT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 116 0 0 68.025345 0.531915 0.02 -0.411966 22 25 572 702 60 60 0 0 AA 15.334148 51 0 1347 0 KEEP - Rimkla YES AA_5 chr4 123019610 123019610 T A intronic Bmp8a NA NA intronic Bmp8a NA NA intronic ENSMUSG00000032726 NA NA 4qD2.2 NA NA chr4 123019610 CCCxGAC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 45 0 0 25.443006 0.5 0.02 -0.17532 10 10 278 267 60 60 0 0 TT 5.113172 17 0 470 0 KEEP - Bmp8a YES AA_5 chr4 126001881 126001881 T A exonic Tekt2 nonsynonymous SNV NM_011902:c.A239T:p.K80M exonic Tekt2 nonsynonymous SNV uc008utf.1:c.A239T:p.K80M exonic ENSMUSG00000028845 nonsynonymous SNV ENSMUST00000030658:c.A239T:p.K80M 4qD2.2 NA NA chr4 126001881 CACxTGT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 104 0 0 14.255554 0.148936 0.02 -0.412146 40 7 1129 195 60 60 0 0 TT 13.836334 46 0 1284 0 KEEP - Tekt2 YES AA_5 chr4 139001784 139001784 A T exonic Ubr4 nonsynonymous SNV NM_001160319:c.A9113T:p.K3038M exonic Ubr4 nonsynonymous SNV uc008vmk.2:c.A5132T:p.K1711M exonic ENSMUSG00000066036 nonsynonymous SNV ENSMUST00000097822:c.A9113T:p.K3038M 4qD3 NA NA chr4 139001784 CCAxGAA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 232 0 0 15.081183 0.101266 0.02 1.002479 71 8 2002 225 60 60 0 0 AA 36.094737 120 0 3348 0 KEEP + Ubr4 YES AA_5 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 37 0 0 44.367236 1 0.02 -0.12275 0 14 0 377 0 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 NO AA_5 chr4 63623074 63623074 T G exonic Tnc nonsynonymous SNV NM_011607:c.A5896C:p.N1966H exonic Tnc nonsynonymous SNV uc008thf.1:c.A4531C:p.N1511H exonic ENSMUSG00000028364 nonsynonymous SNV ENSMUST00000107374:c.A4534C:p.N1512H 4qC1 NA NA chr4 63623074 AGTxCTT T G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 99 2 0 12.214685 0.125 0.02 -0.420928 42 6 1179 172 60 60 0 0 TT 12.30517 41 0 1109 0 KEEP - Tnc NO AA_5 chr4 86873580 86873580 A T exonic Slc24a2 nonsynonymous SNV NM_001110240:c.T140A:p.V47E exonic Slc24a2 nonsynonymous SNV uc008tmi.1:c.T140A:p.V47E exonic ENSMUSG00000037996 nonsynonymous SNV ENSMUST00000044990:c.T140A:p.V47E 4qC4 NA NA chr4 86873580 GCTxCCA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 87 0 0 17.626377 0.205128 0.02 -0.341957 31 8 835 224 60 60 0 0 AA 12.930974 43 0 1152 0 KEEP - Slc24a2 YES AA_5 chr4 87774961 87774961 A G intronic Focad NA NA intronic "BC057079,Kiaa1797" NA NA intronic ENSMUSG00000038368 NA NA 4qC4 NA NA chr4 87774961 TACxCGT A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 95 0 0 18.836235 0.225 0.02 -0.350704 31 9 846 238 60 60 0 0 AA 13.233127 44 0 1198 0 KEEP + Focad NO AA_5 chr4 96250105 96250105 A T exonic Cyp2j9 nonsynonymous SNV NM_028979:c.T679A:p.C227S exonic Cyp2j9 nonsynonymous SNV uc008ttj.1:c.T679A:p.C227S exonic ENSMUSG00000015224 nonsynonymous SNV ENSMUST00000055693:c.T679A:p.C227S 4qC5 NA NA chr4 96250105 GGCxCAT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 136 0 0 11.789559 0.107143 0.02 1.204186 50 6 1375 172 60 60 0 0 AA 18.045027 60 0 1632 0 KEEP - Cyp2j9 YES AA_5 chr5 103093160 103093160 C T exonic Arhgap24 nonsynonymous SNV NM_029270:c.C233T:p.P78L exonic Arhgap24 nonsynonymous SNV uc008yiu.1:c.C233T:p.P78L exonic ENSMUSG00000057315 nonsynonymous SNV ENSMUST00000094559:c.C233T:p.P78L 5qE5 NA NA chr5 103093160 ACCxAGG C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 80 0 0 34.729484 0.388889 0.02 -0.315694 22 14 628 385 60 60 0 0 CC 10.829891 36 0 1032 0 KEEP + Arhgap24 NO AA_5 chr5 104479773 104479773 A C exonic Nudt9 nonsynonymous SNV NM_028794:c.A284C:p.N95T exonic Nudt9 nonsynonymous SNV uc008yka.1:c.A284C:p.N95T exonic ENSMUSG00000029310 nonsynonymous SNV ENSMUST00000031250:c.A284C:p.N95T 5qE5 NA NA chr5 104479773 ACAxCCC A C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 99 0 0 40.523931 0.5 0.02 -0.324405 15 15 404 424 60 60 0 0 AA 15.031512 50 0 1324 0 KEEP + Nudt9 NO AA_5 chr5 113308458 113308458 A C exonic Myo18b nonsynonymous SNV NM_028901:c.T20G:p.L7R exonic Myo18b nonsynonymous SNV uc008ytr.2:c.T20G:p.L7R exonic ENSMUSG00000072720 nonsynonymous SNV ENSMUST00000086617:c.T20G:p.L7R 5qF NA NA chr5 113308458 GCAxGGC A C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 237 4 0 12.181597 0.080808 0.02 0.729661 91 8 2520 204 60 60 0 0 AA 31.875399 106 0 2930 0 KEEP - Myo18b NO AA_5 chr5 138594035 138594035 G T intronic Zfp113 NA NA intronic Zfp113 NA NA intronic ENSMUSG00000037007 NA NA 5qG2 NA NA chr5 138594035 GAAxAGA G T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 145 0 0 8.046917 0.070423 0.02 0.877417 66 5 1852 135 60 60 0 0 GG 17.446553 58 0 1652 0 KEEP - Zfp113 NO AA_5 chr5 139232191 139232191 A G intronic Fam20c NA NA intronic Fam20c NA NA intronic ENSMUSG00000025854 NA NA 5qG2 NA NA chr5 139232191 AGAxGAG A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 135 0 0 22.765442 0.238095 0.02 -0.368102 32 10 882 280 60 60 0 0 AA 21.356068 71 0 1985 0 KEEP + Fam20c NO AA_5 chr5 34421604 34421604 G A exonic Poln synonymous SNV NM_181857:c.C1831T:p.L611L exonic Poln synonymous SNV uc012dux.1:c.C1771T:p.L591L exonic ENSMUSG00000045102 synonymous SNV ENSMUST00000101332:c.C1777T:p.L593L 5qB2 NA NA chr5 34421604 ACAxGGT G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 199 1 0 14.872105 0.109589 0.02 1.055108 65 8 1812 220 60 60 0 0 GG 29.477856 98 0 2787 0 KEEP - Poln NO AA_5 chr5 87557354 87557354 T C exonic Ugt2b5 nonsynonymous SNV NM_009467:c.A1085G:p.D362G exonic Ugt2b5 nonsynonymous SNV uc008xyf.2:c.A1085G:p.D362G exonic ENSMUSG00000054630 nonsynonymous SNV ENSMUST00000067790:c.A1085G:p.D362G 5qE1 "Score=0.893646;Name=No.90587,chr5:87671266" NA chr5 87557354 AGGxCAT T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 477 0 0 31.749797 0.114286 0.02 2.163451 124 16 3308 457 60 60 0 0 TT 74.785254 249 0 6676 0 KEEP - Ugt2b5 NO AA_5 chr5 90130686 90130686 C T exonic Adamts3 stopgain SNV NM_001081401:c.G1899A:p.W633X exonic Adamts3 stopgain SNV uc008yaq.2:c.G1899A:p.W633X exonic ENSMUSG00000043635 stopgain SNV ENSMUST00000061427:c.G1899A:p.W633X 5qE1 NA NA chr5 90130686 CAGxCAG C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 399 4 0 12.747964 0.0625 0.02 2.072261 120 8 3375 219 60 60 0 0 CC 60.731966 202 0 5595 0 KEEP - Adamts3 NO AA_5 chr5 90673174 90673174 T A exonic Ankrd17 synonymous SNV NM_198010:c.A4908T:p.A1636A exonic Ankrd17 synonymous SNV uc012dyh.1:c.A825T:p.A275A exonic ENSMUSG00000055204 synonymous SNV ENSMUST00000081914:c.A4908T:p.A1636A 5qE1 NA NA chr5 90673174 GTGxGCA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.9982 0.9982 1 152 0 0 8.581992 0.068493 0.02 1.046501 68 5 1848 141 60 60 0 0 TT 18.639635 62 0 1638 0 KEEP - Ankrd17 YES AA_5 chr6 101122359 101122359 T A exonic Pdzrn3 nonsynonymous SNV NM_018884:c.A1001T:p.Q334L exonic "AK164098,Pdzrn3" nonsynonymous SNV uc009dce.1:c.A152T:p.Q51L exonic ENSMUSG00000035357 nonsynonymous SNV ENSMUST00000075994:c.A1001T:p.Q334L 6qD3 NA NA chr6 101122359 ACCxGCA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 80 0 0 63.757688 0.560976 0.02 -0.359553 18 23 515 650 60 60 0 0 TT 9.625039 32 0 888 0 KEEP - Pdzrn3 YES AA_5 chr6 113428957 113428957 T G intronic Il17rc NA NA intronic Il17rc NA NA intronic ENSMUSG00000030281 NA NA 6qE3 NA NA chr6 113428957 GACxTAT T G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 422 0 0 23.787554 0.10119 0.02 3.027704 151 17 4252 395 60 60 0 0 TT 59.55299 198 0 5501 0 KEEP + Il17rc NO AA_5 chr6 118543741 118543741 A G UTR3 Cacna1c NA NA UTR3 Cacna1c NA NA UTR3 ENSMUSG00000051331 NA NA 6qF1 NA NA chr6 118543741 AAAxGCC A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 102 0 0 14.204529 0.12963 0.02 1.222042 47 7 1269 199 70 60 0 0 AA 12.031359 40 0 1112 0 KEEP - Cacna1c NO AA_5 chr6 119224270 119224270 C G exonic Cacna2d4 nonsynonymous SNV NM_001033382:c.C1400G:p.A467G exonic Cacna2d4 nonsynonymous SNV uc009dma.1:c.C587G:p.A196G exonic ENSMUSG00000041460 nonsynonymous SNV ENSMUST00000037434:c.C1400G:p.A467G 6qF1 NA NA chr6 119224270 TGGxGGA C G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94839 0.948402 0.999988 84 0 0 36.815597 0.3125 0.02 -0.420698 33 15 826 426 60 60 0 0 CC 8.117301 27 0 710 0 KEEP + Cacna2d4 NO AA_5 chr6 119224278 119224278 C T exonic Cacna2d4 stopgain SNV NM_001033382:c.C1408T:p.Q470X exonic Cacna2d4 stopgain SNV uc009dma.1:c.C595T:p.Q199X exonic ENSMUSG00000041460 stopgain SNV ENSMUST00000037434:c.C1408T:p.Q470X 6qF1 NA NA chr6 119224278 GCGxAGG C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941656 0.941741 0.999909 78 0 0 37.842348 0.340426 0.02 -0.412128 31 16 871 433 60 60 0 0 CC 4.845892 23 1 645 19 KEEP + Cacna2d4 NO AA_5 chr6 127640683 127640683 C A exonic Prmt8 nonsynonymous SNV NM_201371:c.G1046T:p.R349L exonic Prmt8 nonsynonymous SNV uc009dwb.1:c.G1001T:p.R334L exonic ENSMUSG00000030350 nonsynonymous SNV ENSMUST00000032500:c.G1046T:p.R349L 6qF3 NA NA chr6 127640683 CTCxGGA C A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 152 0 0 13.518178 0.101449 0.02 1.091057 62 7 1444 200 60 60 0 0 CC 19.486039 65 0 1524 0 KEEP - Prmt8 NO AA_5 chr6 13143184 13143184 A T exonic Vwde synonymous SNV NM_001013757:c.T1155A:p.A385A exonic Vwde synonymous SNV uc009ayl.1:c.T1155A:p.A385A exonic ENSMUSG00000079679 synonymous SNV ENSMUST00000054530:c.T1155A:p.A385A 6qA1 NA NA chr6 13143184 CACxGCA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 48 0 0 18.840933 0.538462 0.02 -0.113999 6 7 170 194 60 60 0 0 AA 8.722811 29 0 807 0 KEEP - Vwde YES AA_5 chr6 145109321 145109321 T C intronic Lrmp NA NA intronic Lrmp NA NA intronic ENSMUSG00000030263 NA NA 6qG3 NA NA chr6 145109321 GTGxGCT T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 57 0 0 21.562279 0.428571 0.02 -0.184107 12 9 326 235 60 60 0 0 TT 9.016621 30 0 799 0 KEEP + Lrmp NO AA_5 chr6 17615376 17615376 A T exonic Capza2 stopgain SNV NM_007604:c.A802T:p.K268X exonic Capza2 stopgain SNV uc009azt.1:c.A802T:p.K268X exonic ENSMUSG00000015733 stopgain SNV ENSMUST00000015877:c.A802T:p.K268X 6qA2 NA NA chr6 17615376 ACTxAGA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 93 0 0 33.347561 0.341463 0.02 -0.359507 27 14 746 381 60 60 0 0 AA 12.631564 42 0 1148 0 KEEP + Capza2 YES AA_5 chr6 29446642 29446642 G A exonic Kcp nonsynonymous SNV NM_001029985:c.C1868T:p.P623L exonic Kcp nonsynonymous SNV uc009bds.1:c.C1868T:p.P623L exonic ENSMUSG00000059022 nonsynonymous SNV ENSMUST00000078112:c.C1868T:p.P623L 6qA3.3 NA NA chr6 29446642 CACxGAT G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 101 0 0 42.220396 0.34 0.02 -0.437279 33 17 835 480 60 60 0 0 GG 12.315842 41 0 1040 0 KEEP - Kcp NO AA_5 chr6 34836918 34836918 T A splicing Wdr91(NM_001013366:exon13:c.1663-2A>T) NA NA splicing Wdr91(uc009bhz.1:exon13:c.1663-2A>T) NA NA splicing ENSMUSG00000058486(ENSMUST00000081214:exon13:c.1663-2A>T) NA NA 6qB1 NA NA chr6 34836918 AGCxGGG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 131 2 0 52.262866 0.344262 0.02 1.160309 40 21 1118 593 60 60 0 0 TT 15.638451 52 0 1415 0 KEEP - Wdr91 YES AA_5 chr6 38098533 38098533 C T exonic D630045J12Rik synonymous SNV NM_194061:c.G4545A:p.S1515S exonic D630045J12Rik synonymous SNV uc009bjv.2:c.G4122A:p.S1374S exonic ENSMUSG00000063455 synonymous SNV ENSMUST00000117556:c.G3708A:p.S1236S 6qB1 NA NA chr6 38098533 CTCxGAC C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 109 0 0 30.639539 0.270833 0.02 -0.420328 35 13 822 366 60 60 0 0 CC 13.802042 46 0 1103 0 KEEP - D630045J12Rik NO AA_5 chr6 42410510 42410510 A T exonic Olfr458 stopgain SNV NM_146444:c.T507A:p.C169X exonic Olfr458 stopgain SNV uc009bri.1:c.T507A:p.C169X exonic ENSMUSG00000068574 stopgain SNV ENSMUST00000090156:c.T507A:p.C169X 6qB2.1 NA NA chr6 42410510 CCCxCAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 189 0 0 10.360253 0.070588 0.02 0.950331 79 6 2144 169 60 60 0 0 AA 24.641615 82 0 2186 0 KEEP - Olfr458 YES AA_5 chr6 42788471 42788471 T A exonic Olfr449 nonsynonymous SNV NM_147064:c.T590A:p.L197Q exonic Olfr449 nonsynonymous SNV uc009brz.1:c.T590A:p.L197Q exonic ENSMUSG00000049168 nonsynonymous SNV ENSMUST00000050729:c.T590A:p.L197Q 6qB2.1 NA NA chr6 42788471 AGCxGGT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 213 0 0 9.99269 0.057143 0.02 2.469694 99 6 2777 171 60 60 0 0 TT 27.066757 90 0 2455 0 KEEP + Olfr449 YES AA_5 chr6 43185934 43185934 C T exonic Olfr47 nonsynonymous SNV NM_146370:c.C326T:p.T109I exonic Olfr47 nonsynonymous SNV uc009bsl.1:c.C326T:p.T109I exonic ENSMUSG00000061210 nonsynonymous SNV ENSMUST00000078057:c.C326T:p.T109I 6qB2.1 NA NA chr6 43185934 TCAxCGA C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 467 0 0 149.678391 0.294118 0.02 4.932831 156 65 4245 1768 60 60 0 0 CC 63.15559 210 0 5703 0 KEEP + Olfr47 NO AA_5 chr6 4628021 4628021 T A intronic Sgce NA NA intronic Sgce NA NA intronic ENSMUSG00000004631 NA NA 6qA1 NA NA chr6 4628021 TACxATA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 129 0 0 77.301535 0.47541 0.02 1.258632 32 29 894 818 60 60 0 0 TT 13.836436 46 0 1288 0 KEEP - Sgce YES AA_5 chr6 48416740 48416740 A T exonic Sspo nonsynonymous SNV NM_173428:c.A6269T:p.H2090L exonic Sspo nonsynonymous SNV uc009bul.1:c.A305T:p.H102L exonic ENSMUSG00000029797 nonsynonymous SNV ENSMUST00000043676:c.A5846T:p.H1949L 6qB2.3 NA NA chr6 48416740 AACxCAT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 162 1 0 8.206976 0.063291 0.02 1.002533 74 5 2024 139 60 60 0 0 AA 18.044981 60 0 1632 0 KEEP + Sspo YES AA_5 chr6 69650918 69650918 G A intergenic "Rprl1(dist=373750),Rpia(dist=1064796)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076562 synonymous SNV ENSMUST00000103363:c.C195T:p.P65P 6qC1 "Score=0.942472;Name=No.93911,chr6:69467976" NA chr6 69650918 TTTxGGG G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 279 4 0 91.751167 0.385417 0.02 0.844681 59 37 1667 1019 60 60 0 0 GG 43.3159 144 0 4082 0 KEEP + Rprl1 NO AA_5 chr6 85628488 85628488 A T exonic Alms1 nonsynonymous SNV NM_145223:c.A8614T:p.R2872W exonic Alms1 nonsynonymous SNV uc009cpz.1:c.A8614T:p.R2872W exonic ENSMUSG00000063810 nonsynonymous SNV ENSMUST00000072018:c.A8614T:p.R2872W 6qC3 NA NA chr6 85628488 GAGxGGA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 71 0 0 26.092702 0.354839 0.02 -0.271662 20 11 558 296 60 60 0 0 AA 11.129709 37 0 1041 0 KEEP + Alms1 YES AA_5 chr6 86475049 86475049 T A exonic Pcbp1 synonymous SNV NM_011865:c.A861T:p.P287P exonic Pcbp1 synonymous SNV uc009csc.1:c.A861T:p.P287P exonic ENSMUSG00000051695 synonymous SNV ENSMUST00000053015:c.A861T:p.P287P 6qD1 NA NA chr6 86475049 ATTxGGA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 265 4 0 120.759942 0.447619 0.02 2.568123 58 47 1605 1297 60 60 0 0 TT 38.496716 128 0 3523 0 KEEP - Pcbp1 YES AA_5 chr7 104497187 104497187 A T UTR3 Kctd21 NA NA UTR3 Kctd21 NA NA UTR3 ENSMUSG00000044952 NA NA 7qE1 NA NA chr7 104497187 TTGxGCC A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 135 0 0 16.25667 0.150943 0.02 1.230463 45 8 1269 222 60 60 0 0 AA 18.333344 61 0 1696 0 KEEP + Kctd21 YES AA_5 chr7 105692494 105692494 T C intergenic "Lrrc32(dist=42154),2210018M11Rik(dist=46622)" NA NA exonic A630091E08Rik synonymous SNV uc009ikm.1:c.A63G:p.R21R exonic ENSMUSG00000055446 synonymous SNV ENSMUST00000069035:c.A63G:p.R21R 7qE2 NA NA chr7 105692494 AGGxCGG T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 111 0 0 9.58019 0.102041 0.02 -0.438444 44 5 1225 142 60 60 0 0 TT 12.01257 40 0 1037 0 KEEP - Lrrc32 NO AA_5 chr7 108972610 108972610 T C exonic Inppl1 nonsynonymous SNV NM_001122739:c.A3346G:p.S1116G exonic Inppl1 nonsynonymous SNV uc009ipf.2:c.A1504G:p.S502G exonic ENSMUSG00000032737 nonsynonymous SNV ENSMUST00000035836:c.A3346G:p.S1116G 7qE3 NA NA chr7 108972610 CACxTGC T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 230 1 0 11.820739 0.067308 0.02 2.452355 97 7 2701 196 60 60 0 0 TT 25.002202 90 2 2419 18 KEEP - Inppl1 NO AA_5 chr7 110368803 110368803 T A exonic Olfr594 synonymous SNV NM_207143:c.T570A:p.S190S exonic Olfr594 synonymous SNV uc009itj.1:c.T570A:p.S190S exonic ENSMUSG00000073954 synonymous SNV ENSMUST00000098205:c.T570A:p.S190S 7qE3 NA NA chr7 110368803 GTCxTGT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 149 1 0 57.16668 0.315789 0.02 1.02877 52 24 1471 663 60 60 0 0 TT 18.61445 62 0 1711 0 KEEP + Olfr594 YES AA_5 chr7 114966210 114966210 T A exonic Olfr469 nonsynonymous SNV NM_146426:c.A772T:p.I258L exonic Olfr469 nonsynonymous SNV uc009jbm.1:c.A772T:p.I258L exonic ENSMUSG00000057146 nonsynonymous SNV ENSMUST00000075704:c.A772T:p.I258L 7qE3 "Score=0.945181;Name=No.101613,chr7:114984383" NA chr7 114966210 TTAxGGT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 434 1 0 109.956444 0.348837 0.02 2.340827 84 45 2282 1247 60 60 0 0 TT 72.744065 242 0 6466 0 KEEP - Olfr469 YES AA_5 chr7 114966211 114966211 G C exonic Olfr469 synonymous SNV NM_146426:c.C771G:p.T257T exonic Olfr469 synonymous SNV uc009jbm.1:c.C771G:p.T257T exonic ENSMUSG00000057146 synonymous SNV ENSMUST00000075704:c.C771G:p.T257T 7qE3 "Score=0.945181;Name=No.101613,chr7:114984383" NA chr7 114966211 TATxGTC G C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 435 1 0 94.796744 0.351562 0.02 2.055335 83 45 2336 1094 60 60 0 0 GG 74.504548 248 0 6942 0 KEEP - Olfr469 NO AA_5 chr7 117285572 117285572 T C exonic Wee1 synonymous SNV NM_009516:c.T1887C:p.T629T exonic Wee1 synonymous SNV uc009jey.1:c.T1887C:p.T629T exonic ENSMUSG00000031016 synonymous SNV ENSMUST00000033326:c.T1887C:p.T629T 7qF1 NA NA chr7 117285572 AACxTCT T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 96 0 0 9.728158 0.135135 0.02 -0.324459 32 5 903 137 60 60 0 0 TT 14.133133 47 0 1305 0 KEEP + Wee1 NO AA_5 chr7 117409432 117409432 A C exonic Swap70 nonsynonymous SNV NM_009302:c.A725C:p.Y242S exonic Swap70 nonsynonymous SNV uc009jfa.2:c.A725C:p.Y242S exonic ENSMUSG00000031015 nonsynonymous SNV ENSMUST00000033325:c.A725C:p.Y242S 7qF1 NA NA chr7 117409432 ACTxTGT A C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 0.999999 72 0 0 10.942058 0.16129 0.02 -0.271707 26 5 675 145 60 60 0 0 AA 10.825879 36 0 963 0 KEEP + Swap70 NO AA_5 chr7 134022517 134022517 T A exonic Taok2 synonymous SNV NM_001163774:c.A480T:p.S160S exonic Taok2 synonymous SNV uc009jtg.2:c.A480T:p.S160S exonic ENSMUSG00000059981 synonymous SNV ENSMUST00000071268:c.A480T:p.S160S 7qF3 NA NA chr7 134022517 TTCxGAC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 314 2 0 16.16738 0.07563 0.02 2.347654 110 9 3059 257 60 60 0 0 TT 44.514368 148 0 4082 0 KEEP - Taok2 YES AA_5 chr7 148464736 148464736 G T exonic Sct nonsynonymous SNV NM_011328:c.C181A:p.R61S exonic Sct nonsynonymous SNV uc009kkl.1:c.C181A:p.R61S exonic ENSMUSG00000038580 nonsynonymous SNV ENSMUST00000046156:c.C181A:p.R61S 7qF5 NA NA chr7 148464736 TGCxCTT G T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 146 0 0 41.169284 0.243243 0.02 1.136238 56 18 1424 504 60 60 0 0 GG 14.399746 48 0 1171 0 KEEP - Sct NO AA_5 chr7 149268754 149268754 T A exonic Dusp8 nonsynonymous SNV NM_008748:c.A1003T:p.T335S exonic Dusp8 nonsynonymous SNV uc009kmn.1:c.A1003T:p.T335S exonic ENSMUSG00000037887 nonsynonymous SNV ENSMUST00000164254:c.A1003T:p.T335S 7qF5 NA NA chr7 149268754 AGGxAGA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877628 0.877708 0.999909 75 1 0 46.566997 0.473684 0.02 -0.341813 20 18 513 494 60 60 0 0 TT 7.21707 24 0 640 0 KEEP - Dusp8 YES AA_5 chr7 149672321 149672321 A T exonic Lsp1 synonymous SNV NM_001136071:c.A285T:p.P95P exonic Lsp1 synonymous SNV uc009knb.2:c.A285T:p.P95P exonic ENSMUSG00000018819 synonymous SNV ENSMUST00000018963:c.A285T:p.P95P 7qF5 NA NA chr7 149672321 GCCxCGG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291997 0.292001 0.999988 54 0 0 6.592606 0.176471 0.02 -0.149075 14 3 390 86 60 60 0 0 AA 8.119478 27 0 724 0 KEEP + Lsp1 YES AA_5 chr7 15166384 15166384 G T ncRNA_exonic Nlrp5-ps NA NA exonic Vmn1r90 nonsynonymous SNV uc012ezx.1:c.C468A:p.H156Q exonic ENSMUSG00000041596 nonsynonymous SNV ENSMUST00000173766:c.C483A:p.H161Q 7qA1 "Score=0.925456;Name=No.98229,chr7:24189222" NA chr7 15166384 TAAxTGC G T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 128 0 2 20.638525 0.166667 0.02 1.169118 50 10 1371 276 60 46 0 0 GG 16.841606 56 0 1526 0 KEEP - Nlrp5-ps NO AA_5 chr7 152453212 152453212 C T exonic Tpcn2 nonsynonymous SNV NM_146206:c.G1009A:p.E337K exonic Tpcn2 nonsynonymous SNV uc009kqx.1:c.G1009A:p.E337K exonic ENSMUSG00000048677 nonsynonymous SNV ENSMUST00000058022:c.G1009A:p.E337K 7qF5 NA NA chr7 152453212 ACTxAGG C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 84 0 0 122.01213 0.95122 0.02 -0.368266 2 39 59 1069 60 60 0 0 CC 9.325834 31 0 891 0 KEEP - Tpcn2 NO AA_5 chr7 18934604 18934604 A C exonic Psg18 nonsynonymous SNV NM_001163685:c.T611G:p.I204R exonic Psg18 nonsynonymous SNV uc009fjj.2:c.T611G:p.I204R exonic ENSMUSG00000003505 nonsynonymous SNV ENSMUST00000098783:c.T611G:p.I204R 7qA2 "Score=0.956092;Name=No.98795,chr7:19008176" NA chr7 18934604 GCTxTGC A C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 463 0 40 16.531133 0.055556 0.02 3.498818 170 10 4586 285 60 60 0 0 AA 69.452833 231 0 6155 0 KEEP - Psg18 NO AA_5 chr7 19590469 19590469 T A exonic Irf2bp1 synonymous SNV NM_178757:c.T684A:p.A228A exonic Irf2bp1 synonymous SNV uc009fkc.1:c.T684A:p.A228A exonic ENSMUSG00000044030 synonymous SNV ENSMUST00000053713:c.T684A:p.A228A 7qA3 NA NA chr7 19590469 GGCxGTA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 131 0 0 45.373861 0.279412 0.02 1.197251 49 19 1363 538 60 60 0 0 TT 13.877825 51 1 1409 13 KEEP + Irf2bp1 YES AA_5 chr7 30750237 30750237 T A intergenic "Zfp74(dist=13325),Zfp568(dist=18737)" NA NA exonic AK138949 nonsynonymous SNV uc009gcs.1:c.T217A:p.S73T ncRNA_exonic ENSMUSG00000083669 NA NA 7qB1 NA NA chr7 30750237 GACxCAA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668463 0.668523 0.999909 79 0 16 7.760852 0.137931 0.02 -0.254222 25 4 682 109 60 29 0 0 TT 8.723621 29 0 821 0 KEEP + Zfp74 YES AA_5 chr7 31028836 31028836 T A intronic Wdr62 NA NA intronic Wdr62 NA NA intronic ENSMUSG00000037020 NA NA 7qB1 NA NA chr7 31028836 CTGxGTG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641289 0.641347 0.999909 52 0 0 41.708216 0.571429 0.02 -0.244166 12 16 328 425 60 60 0 0 TT 6.916575 23 0 616 0 KEEP - Wdr62 YES AA_5 chr7 31247875 31247875 C T exonic Nphs1 synonymous SNV NM_019459:c.C924T:p.A308A exonic Nphs1 synonymous SNV uc009gem.1:c.C882T:p.A294A exonic ENSMUSG00000006649 synonymous SNV ENSMUST00000006825:c.C924T:p.A308A 7qB1 NA NA chr7 31247875 TGCxCAG C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 146 0 0 50.746843 0.291667 0.02 1.153382 51 21 1434 596 60 60 0 0 CC 17.144307 57 0 1595 0 KEEP + Nphs1 NO AA_5 chr7 33112238 33112238 A G exonic Scgb2b12 nonsynonymous SNV NM_001281508:c.T11C:p.I4T intergenic "Abpa29_a7(dist=613364),Abpa29_a7(dist=114322)" NA NA intergenic "ENSMUSG00000091362(dist=103568),ENSMUSG00000090513(dist=6979)" NA NA 7qB1 "Score=0.988839;Name=No.100668,chr7:33653169" NA chr7 33112238 AGTxTCC A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 47 0 0 6.653007 1 0.02 -0.017539 0 2 0 57 0 29 0 0 AA 7.648015 36 1 944 30 KEEP NA Scgb2b12 NO AA_5 chr7 35461628 35461628 T A intronic Chst8 NA NA UTR5 Chst8 NA NA exonic ENSMUSG00000060402 nonsynonymous SNV ENSMUST00000154629:c.A194T:p.H65L 7qB1 NA NA chr7 35461628 CTGxGAT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 148 5 0 61.821553 0.5 0.02 -0.403378 23 23 638 647 60 60 0 0 TT 21.648656 72 0 1925 0 KEEP - Chst8 YES AA_5 chr7 3962315 3962315 T A intronic Lair1 NA NA intronic Lair1 NA NA intronic ENSMUSG00000055541 NA NA 7qA1 NA NA chr7 3962315 TTCxCAC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 295 4 0 26.953856 0.134615 0.02 2.576813 90 14 2536 381 60 60 0 0 TT 43.615891 145 0 4068 0 KEEP - Lair1 YES AA_5 chr7 4346049 4346049 C A intronic Gp6 NA NA intronic Gp6 NA NA intronic ENSMUSG00000078810 NA NA 7qA1 NA NA chr7 4346049 TCAxTAG C A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 101 0 0 45.074299 0.439024 0.02 -0.359498 23 18 635 487 60 60 0 0 CC 15.338997 51 0 1419 0 KEEP - Gp6 NO AA_5 chr7 46426574 46426574 C T intergenic "NONE(dist=NONE),Gm21276(dist=85420)" NA NA intergenic "NONE(dist=NONE),Gm16387(dist=85420)" NA NA intergenic "NONE(dist=NONE),ENSMUSG00000074169(dist=85420)" NA NA 7qB3 "Score=0.980122;Name=No.101108,chr7:39276342" NA chr7 46426574 ACAxTCC C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 116 0 20 36.898104 0.363636 0.02 -0.385584 28 16 768 418 60 60 0 0 CC 16.540974 55 0 1514 0 KEEP NA NONE NO AA_5 chr7 46567012 46567012 G A intergenic "Gm21276(dist=47108),Gm5114(dist=95652)" NA NA intergenic "Gm16387(dist=47108),Gm5114(dist=95652)" NA NA intergenic "ENSMUSG00000070060(dist=27509),ENSMUSG00000053742(dist=95652)" NA NA 7qB3 "Score=0.96737;Name=No.101082,chr7:39161441" NA chr7 46567012 TGTxGTT G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 442 2 2 49.080463 0.113445 0.02 4.685731 211 27 5859 727 60 60 0 0 GG 48.401105 161 0 4528 0 KEEP NA Gm21276 NO AA_5 chr7 48299738 48299738 A T exonic Gm4884 nonsynonymous SNV NM_183166:c.A1760T:p.Y587F exonic Gm4884 nonsynonymous SNV uc009glj.1:c.A1760T:p.Y587F exonic ENSMUSG00000048312 nonsynonymous SNV ENSMUST00000164422:c.A1760T:p.Y587F 7qB3 "Score=0.936278;Name=No.101148,chr7:46467598" NA chr7 48299738 CCTxCAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 502 2 0 28.343967 0.07767 0.02 4.877198 190 16 5067 451 60 60 0 0 AA 73.322978 250 2 6673 16 KEEP + Gm4884 YES AA_5 chr7 48541653 48541653 C T exonic Gm5592 nonsynonymous SNV NM_001033782:c.C208T:p.P70S exonic Gm5592 nonsynonymous SNV uc009glk.1:c.C208T:p.P70S exonic ENSMUSG00000072259 nonsynonymous SNV ENSMUST00000097044:c.C208T:p.P70S 7qB3 "Score=0.960073;Name=No.101182,chr7:48330835" NA chr7 48541653 AACxCAC C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 166 0 0 11.159063 0.078947 0.02 1.02036 70 6 1926 174 60 60 0 0 CC 23.149441 77 0 2143 0 KEEP + Gm5592 NO AA_5 chr7 48648528 48648528 G T intronic AI987944 NA NA intronic AI987944 NA NA intronic ENSMUSG00000056383 NA NA 7qB3 NA NA chr7 48648528 CAAxCCA G T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 120 0 0 46.088554 0.404255 0.02 -0.412113 28 19 785 508 60 60 0 0 GG 17.145689 57 0 1615 0 KEEP - AI987944 NO AA_5 chr7 5835337 5835337 A G exonic Vmn1r64 nonsynonymous SNV NM_207544:c.T808C:p.W270R exonic Vmn1r64 nonsynonymous SNV uc009fal.1:c.T808C:p.W270R exonic ENSMUSG00000058399 nonsynonymous SNV ENSMUST00000078475:c.T808C:p.W270R 7qA1 NA NA chr7 5835337 ACCxAAG A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 106 0 0 31.825282 0.267857 0.02 1.204237 41 15 1147 388 60 60 0 0 AA 12.619577 42 0 1128 0 KEEP - Vmn1r64 NO AA_5 chr7 92004895 92004895 T A exonic Olfr291 nonsynonymous SNV NM_146415:c.T21A:p.N7K exonic Olfr291 nonsynonymous SNV uc009iep.2:c.T21A:p.N7K exonic ENSMUSG00000070460 nonsynonymous SNV ENSMUST00000078172:c.T21A:p.N7K 7qD3 NA NA chr7 92004895 CAAxCTT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 191 3 7 70.878909 0.371795 0.02 1.011299 49 29 1347 794 60 60 0 0 TT 23.448539 78 0 2084 0 KEEP + Olfr291 YES AA_5 chr7 92005788 92005788 G A exonic Olfr291 nonsynonymous SNV NM_146415:c.G914A:p.R305K exonic Olfr291 nonsynonymous SNV uc009iep.2:c.G914A:p.R305K exonic ENSMUSG00000070460 nonsynonymous SNV ENSMUST00000078172:c.G914A:p.R305K 7qD3 NA NA chr7 92005788 TAAxAAA G A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 146 0 0 8.543702 0.070423 0.02 0.974698 66 5 1892 140 60 60 0 0 GG 18.049333 60 0 1712 0 KEEP + Olfr291 NO AA_5 chr8 107450226 107450226 A T exonic Ces2e synonymous SNV NM_001163756:c.A6T:p.P2P exonic Ces2e synonymous SNV uc009nbg.2:c.A6T:p.P2P exonic ENSMUSG00000031886 synonymous SNV ENSMUST00000034355:c.A6T:p.P2P 8qD3 NA NA chr8 107450226 GCCxCTA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 81 2 0 18.530893 0.258065 0.02 -0.271835 23 8 640 224 60 60 0 0 AA 11.428311 38 0 1031 0 KEEP + Ces2e YES AA_5 chr8 108468486 108468486 T A exonic Slc12a4 nonsynonymous SNV NM_001253804:c.A2974T:p.M992L exonic Slc12a4 nonsynonymous SNV uc009ner.1:c.A2968T:p.M990L exonic ENSMUSG00000017765 nonsynonymous SNV ENSMUST00000116429:c.A2968T:p.M990L 8qD3 NA NA chr8 108468486 CCAxGTA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 264 2 0 9.459509 0.057377 0.02 2.222946 115 7 3145 177 60 60 0 0 TT 33.380553 111 0 2988 0 KEEP - Slc12a4 YES AA_5 chr8 110057173 110057173 C G exonic Wwp2 nonsynonymous SNV NM_025830:c.C988G:p.R330G exonic Wwp2 nonsynonymous SNV uc009nhw.1:c.C90G:p.S30R exonic ENSMUSG00000031930 nonsynonymous SNV ENSMUST00000034407:c.C850G:p.R284G 8qD3 NA NA chr8 110057173 GAGxGGC C G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 112 0 0 29.239457 0.315789 0.02 -0.332977 26 12 629 338 60 60 0 0 CC 18.022666 60 0 1455 0 KEEP + Wwp2 NO AA_5 chr8 113535357 113535357 T C exonic Ddx19b nonsynonymous SNV NM_001190786:c.A658G:p.R220G exonic Ddx19b nonsynonymous SNV uc009nlm.2:c.A613G:p.R205G exonic ENSMUSG00000033658 nonsynonymous SNV ENSMUST00000040241:c.A613G:p.R205G 8qE1 "Score=0.984184;Name=No.104262,chr8:113499765" NA chr8 113535357 CCCxCTC T C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 252 0 0 30.955562 0.115942 0.02 2.180545 122 16 3425 448 60 60 0 0 TT 29.444616 98 0 2691 0 KEEP - Ddx19b NO AA_5 chr8 12709891 12709891 T A ncRNA_exonic Gm15348 NA NA ncRNA_exonic Gm15348 NA NA ncRNA_exonic ENSMUSG00000074469 NA NA 8qA1.1 NA NA chr8 12709891 GGGxGAA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 60 0 0 30.589858 0.413793 0.02 -0.254058 17 12 447 334 60 60 0 0 TT 7.288445 27 1 677 7 KEEP - Gm15348 YES AA_5 chr8 127420830 127420830 T A exonic Exoc8 stopgain SNV NM_198103:c.A697T:p.K233X exonic Exoc8 stopgain SNV uc009nxw.1:c.A697T:p.K233X exonic ENSMUSG00000074030 stopgain SNV ENSMUST00000098312:c.A697T:p.K233X 8qE2 NA NA chr8 127420830 CTTxGAC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 147 0 0 70.844772 0.341176 0.02 1.048229 56 29 1532 807 60 60 0 0 TT 13.217673 44 0 1171 0 KEEP - Exoc8 YES AA_5 chr8 128387050 128387050 C A exonic Pcnxl2 nonsynonymous SNV NM_175561:c.G2383T:p.V795F exonic Pcnxl2 nonsynonymous SNV uc009nyo.1:c.G1810T:p.V604F exonic ENSMUSG00000060212 nonsynonymous SNV ENSMUST00000151787:c.G181T:p.V61F 8qE2 NA NA chr8 128387050 AGAxGAT C A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 230 0 0 89.871925 0.380435 0.02 0.987274 57 35 1371 997 60 60 0 0 CC 30.948052 103 0 2554 0 KEEP - Pcnxl2 NO AA_5 chr8 128387055 128387055 A T exonic Pcnxl2 nonsynonymous SNV NM_175561:c.T2378A:p.F793Y exonic Pcnxl2 nonsynonymous SNV uc009nyo.1:c.T1805A:p.F602Y exonic ENSMUSG00000060212 nonsynonymous SNV ENSMUST00000151787:c.T176A:p.F59Y 8qE2 NA NA chr8 128387055 ATGxACT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 231 0 0 85.910924 0.387097 0.02 0.879798 57 36 1587 957 60 60 0 0 AA 31.550615 105 0 2888 0 KEEP - Pcnxl2 YES AA_5 chr8 13842553 13842553 A T intergenic "AF366264(dist=4464),Champ1(dist=27088)" NA NA intergenic "AF366264(dist=4464),Zfp828(dist=27088)" NA NA intergenic "ENSMUSG00000057116(dist=4464),ENSMUSG00000047710(dist=27088)" NA NA 8qA1.1 "Score=0.954139;Name=No.91839,chr5:5809104" NA chr8 13842553 GGCxGAA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 306 3 0 11.552531 0.059829 0.02 2.35564 110 7 3130 197 60 60 0 0 AA 39.954449 137 1 3800 11 KEEP NA AF366264 YES AA_5 chr8 25892128 25892128 C T exonic Adam5 synonymous SNV NM_001272057:c.G1734A:p.R578R exonic Adam5 synonymous SNV uc012gbm.1:c.G1215A:p.R405R exonic ENSMUSG00000031554 synonymous SNV ENSMUST00000050300:c.G1734A:p.R578R 8qA2 NA NA chr8 25892128 TATxCTC C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 138 0 0 44.595199 0.367347 0.02 -0.42963 31 18 857 500 60 60 0 0 CC 20.755957 69 0 1952 0 KEEP - Adam5 NO AA_5 chr8 25892129 25892129 C T exonic Adam5 nonsynonymous SNV NM_001272057:c.G1733A:p.R578K exonic Adam5 nonsynonymous SNV uc012gbm.1:c.G1214A:p.R405K exonic ENSMUSG00000031554 nonsynonymous SNV ENSMUST00000050300:c.G1733A:p.R578K 8qA2 NA NA chr8 25892129 ATCxTCC C T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 135 0 0 43.793546 0.36 0.02 -0.438364 32 18 894 494 60 60 0 0 CC 20.144416 67 0 1890 0 KEEP - Adam5 NO AA_5 chr8 70025785 70025785 T A exonic Nat2 nonsynonymous SNV NM_001168577:c.T647A:p.V216E exonic Nat2 nonsynonymous SNV uc009lvw.2:c.T647A:p.V216E exonic ENSMUSG00000051147 nonsynonymous SNV ENSMUST00000093470:c.T647A:p.V216E 8qB3.3 NA NA chr8 70025785 CTGxGTT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 199 0 0 52.740913 0.289474 0.02 1.127124 54 22 1481 621 60 60 0 0 TT 28.267636 94 0 2546 0 KEEP + Nat2 YES AA_5 chr8 71337610 71337610 A T exonic Ints10 nonsynonymous SNV NM_027590:c.A1523T:p.E508V exonic Ints10 nonsynonymous SNV uc009lwl.1:c.A1523T:p.E508V exonic ENSMUSG00000031864 nonsynonymous SNV ENSMUST00000034328:c.A1523T:p.E508V 8qB3.3 NA NA chr8 71337610 GGGxGTA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 206 0 0 64.629179 0.293478 0.02 0.988114 65 27 1818 759 60 60 0 0 AA 26.771025 89 0 2496 0 KEEP + Ints10 YES AA_5 chr8 73868023 73868023 A T exonic Myo9b nonsynonymous SNV NM_001142322:c.A2612T:p.Q871L exonic Myo9b nonsynonymous SNV uc012gfp.1:c.A2615T:p.Q872L exonic ENSMUSG00000004677 nonsynonymous SNV ENSMUST00000071935:c.A2612T:p.Q871L 8qB3.3 NA NA chr8 73868023 TGCxGCA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 106 0 0 26.031582 0.255814 0.02 -0.377086 32 11 902 314 60 60 0 0 AA 14.738195 49 0 1357 0 KEEP + Myo9b YES AA_5 chr9 102415258 102415258 T A intronic Ky NA NA intronic Ky NA NA intronic ENSMUSG00000035606 NA NA 9qF1 NA NA chr9 102415258 CCAxGGT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 97 0 0 11.658975 0.122449 0.02 -0.429626 43 6 1155 167 60 60 0 0 TT 12.328544 41 0 1090 0 KEEP + Ky YES AA_5 chr9 108015176 108015176 G T exonic Bsn nonsynonymous SNV NM_007567:c.C5707A:p.L1903M exonic Bsn nonsynonymous SNV uc009rov.1:c.C5707A:p.L1903M exonic ENSMUSG00000032589 nonsynonymous SNV ENSMUST00000035208:c.C5707A:p.L1903M 9qF2 NA NA chr9 108015176 CCAxCTG G T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 184 0 0 7.547686 0.053763 0.02 0.781878 88 5 2460 136 60 60 0 0 GG 18.299421 65 1 1839 11 KEEP - Bsn NO AA_5 chr9 109127068 109127068 T G intronic Fbxw20 NA NA intronic Fbxw20 NA NA intronic ENSMUSG00000061701 NA NA 9qF2 NA NA chr9 109127068 AGGxTAA T G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 76 0 0 8.096299 0.173913 0.02 -0.201682 19 4 528 108 60 60 0 0 TT 14.13675 47 0 1303 0 KEEP - Fbxw20 NO AA_5 chr9 109305723 109305723 A T intronic Fbxw22 NA NA intronic Fbxw22 NA NA intronic ENSMUSG00000070324 NA NA 9qF2 "Score=0.91713;Name=No.105620,chr9:109195425" NA chr9 109305723 TGCxCAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 390 5 0 114.218697 0.295597 0.02 4.08543 112 47 3052 1337 60 60 0 0 AA 53.520273 178 0 4776 0 KEEP - Fbxw22 YES AA_5 chr9 21739977 21739977 A T exonic Ccdc159 nonsynonymous SNV NM_001164614:c.A1136T:p.Q379L exonic Ccdc159 nonsynonymous SNV uc009omx.1:c.A1112T:p.Q371L exonic ENSMUSG00000006241 nonsynonymous SNV ENSMUST00000006403:c.A1112T:p.Q371L 9qA3 NA NA chr9 21739977 GCCxGAA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 165 2 0 40.197507 0.274194 0.02 1.151531 45 17 1265 479 60 60 0 0 AA 20.752827 69 0 1897 0 KEEP + Ccdc159 YES AA_5 chr9 34863178 34863178 T A UTR5 St3gal4 NA NA UTR5 St3gal4 NA NA UTR5 ENSMUSG00000032038 NA NA 9qA4 NA NA chr9 34863178 GTTxCTC T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 69 0 0 9.64507 0.16129 0.02 -0.271565 26 5 701 132 60 60 0 0 TT 8.422537 28 0 788 0 KEEP - St3gal4 YES AA_5 chr9 39065481 39065481 A T exonic Olfr945 nonsynonymous SNV NM_146506:c.T784A:p.Y262N exonic Olfr945 nonsynonymous SNV uc009oxu.1:c.T784A:p.Y262N exonic ENSMUSG00000063380 nonsynonymous SNV ENSMUST00000076903:c.T784A:p.Y262N 9qA5.1 NA NA chr9 39065481 AGTxCAT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 205 2 0 53.526405 0.270588 0.02 0.949933 62 23 1669 641 60 60 0 0 AA 29.16752 97 0 2578 0 KEEP - Olfr945 YES AA_5 chr9 39957403 39957403 A T exonic Tmem225 synonymous SNV NM_029379:c.A420T:p.I140I exonic Tmem225 synonymous SNV uc009oze.2:c.A420T:p.I140I exonic ENSMUSG00000040541 synonymous SNV ENSMUST00000046333:c.A420T:p.I140I 9qA5.1 NA NA chr9 39957403 GATxGCT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 107 0 0 35.910465 0.3125 0.02 -0.429673 33 15 919 417 60 60 0 1 AA 15.036944 50 0 1354 0 KEEP + Tmem225 YES AA_5 chr9 43883601 43883601 A T exonic Usp2 nonsynonymous SNV NM_016808:c.A112T:p.N38Y exonic Usp2 nonsynonymous SNV uc009pbn.1:c.A112T:p.N38Y exonic ENSMUSG00000032010 nonsynonymous SNV ENSMUST00000034508:c.A112T:p.N38Y 9qA5.1 NA NA chr9 43883601 GCCxACC A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 228 1 0 74.88161 0.333333 0.02 0.978092 62 31 1709 858 60 60 0 0 AA 31.793176 106 0 2804 0 KEEP - Usp2 YES AA_5 chr9 45200757 45200757 A T splicing Fxyd6(NM_022004:exon7:c.257-2A>T) NA NA splicing "Fxyd6(uc009pfs.1:exon7:c.257-2A>T,uc009pft.1:exon7:c.254-2A>T)" NA NA splicing ENSMUSG00000066705(ENSMUST00000085939:exon7:c.257-2A>T) NA NA 9qA5.2 NA NA chr9 45200757 TCCxGCT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 53 0 0 11.767526 0.277778 0.02 -0.157844 13 5 365 140 60 60 0 0 AA 8.718821 29 0 786 0 KEEP + Fxyd6 YES AA_5 chr9 54558439 54558439 G C exonic Dnaja4 synonymous SNV NM_021422:c.G777C:p.L259L exonic Dnaja4 synonymous SNV uc009prl.2:c.G777C:p.L259L exonic ENSMUSG00000032285 synonymous SNV ENSMUST00000070070:c.G777C:p.L259L 9qA5.3 NA NA chr9 54558439 TCTxATC G C Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.455625 0.457757 0.995343 40 0 0 6.328158 0.136364 0.02 -0.192939 19 3 548 87 60 60 0 0 GG 4.21162 14 0 401 0 KEEP + Dnaja4 NO AA_5 chr9 57803508 57803508 A T splicing Sema7a(NM_011352:exon7:c.656-2A>T) NA NA splicing Sema7a(uc009pvy.1:exon7:c.656-2A>T) NA NA splicing ENSMUSG00000038264(ENSMUST00000043059:exon7:c.656-2A>T) NA NA 9qB NA NA chr9 57803508 GGCxGAC A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 125 2 0 35.591136 0.288462 0.02 1.23924 37 15 1040 420 60 60 0 0 AA 17.133552 57 0 1551 0 KEEP + Sema7a YES AA_5 chr9 71573439 71573439 A G exonic Cgnl1 nonsynonymous SNV NM_026599:c.T436C:p.F146L exonic Cgnl1 nonsynonymous SNV uc012gwn.1:c.T436C:p.F146L exonic ENSMUSG00000032232 nonsynonymous SNV ENSMUST00000072899:c.T436C:p.F146L 9qD NA NA chr9 71573439 GGAxGTT A G Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 187 0 0 29.020999 0.16092 0.02 0.932304 73 14 2059 390 60 60 0 0 AA 24.354955 81 0 2251 0 KEEP - Cgnl1 NO AA_5 chr9 7386745 7386745 A T exonic Mmp1b synonymous SNV NM_032007:c.T378A:p.V126V exonic Mmp1b synonymous SNV uc009ocn.1:c.T378A:p.V126V exonic ENSMUSG00000041620 synonymous SNV ENSMUST00000047888:c.T378A:p.V126V 9qA1 NA NA chr9 7386745 CACxACT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 141 0 3 57.621599 0.359375 0.02 1.134011 41 23 1137 648 60 60 0 0 AA 18.623604 62 0 1669 0 KEEP - Mmp1b YES AA_5 chr9 7834401 7834401 T A exonic Birc2 synonymous SNV NM_007465:c.A78T:p.T26T exonic Birc2 synonymous SNV uc009ocz.2:c.A78T:p.T26T exonic ENSMUSG00000057367 synonymous SNV ENSMUST00000074246:c.A78T:p.T26T 9qA1 NA NA chr9 7834401 GATxGTG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 90 0 0 17.981428 0.242424 0.02 -0.289372 25 8 697 221 60 60 0 0 TT 14.135932 47 0 1289 0 KEEP - Birc2 YES AA_5 chrX 136384159 136384159 T A intronic Morc4 NA NA intronic Morc4 NA NA intronic ENSMUSG00000031434 NA NA XqF1 NA NA chrX 136384159 ATCxGCA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 89 0 0 40.307717 0.372093 0.02 -0.377036 27 16 753 450 60 60 0 0 TT 12.934178 43 0 1203 0 KEEP - Morc4 YES AA_5 chrX 156556547 156556547 T A exonic Map3k15 synonymous SNV NM_001163085:c.T3387A:p.A1129A exonic Map3k15 synonymous SNV uc009utb.2:c.T3387A:p.A1129A exonic ENSMUSG00000031303 synonymous SNV ENSMUST00000033665:c.T3387A:p.A1129A XqF4 NA NA chrX 156556547 AGCxGTG T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 92 0 0 22.630718 0.333333 0.02 -0.236772 18 9 505 258 60 60 0 0 TT 15.03873 50 0 1385 0 KEEP + Map3k15 YES AA_5 chrX 3076746 3076746 A T intergenic "NONE(dist=NONE),Gm3701(dist=164924)" NA NA intergenic "NONE(dist=NONE),Gm3750(dist=164924)" NA NA downstream ENSMUSG00000080876 NA NA XqA1.1 "Score=0.985306;Name=No.106620,chrX:4782864" NA chrX 3076746 TCCxAAG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 508 2 9 36.034387 0.098446 0.02 3.482761 174 19 4869 539 60 60 0 0 AA 80.266664 267 0 7255 0 KEEP NA NONE YES AA_5 chrX 34907999 34907999 A T exonic Rhox2d nonsynonymous SNV NM_001081669:c.A44T:p.E15V exonic Rhox2d nonsynonymous SNV uc009syw.1:c.A44T:p.E15V exonic ENSMUSG00000079634 nonsynonymous SNV ENSMUST00000115179:c.A44T:p.E15V XqA3.3 "Score=0.97464;Name=No.112616,chrX:34782999" NA chrX 34907999 CTGxGGA A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 445 2 3 181.04242 0.436364 0.02 3.638864 93 72 2622 1958 60 60 0 0 AA 59.849227 209 1 5814 28 KEEP + Rhox2d YES AA_5 chrX 54168475 54168475 A T intergenic "Mtap7d3(dist=92973),Brs3(dist=127776)" NA NA intergenic "Mtap7d3(dist=92973),Gpr112(dist=48108)" NA NA exonic ENSMUSG00000053852 synonymous SNV ENSMUST00000136396:c.A2652T:p.P884P XqA5 NA NA chrX 54168475 TCCxAGT A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 103 0 0 35.792723 0.263158 0.02 1.293682 42 15 1174 429 60 60 0 0 AA 11.729405 39 0 1069 0 KEEP NA Mtap7d3 YES AA_5 chrX 59544608 59544608 A T exonic 4933402E13Rik nonsynonymous SNV NM_001199996:c.A1058T:p.Y353F exonic 4933402E13Rik nonsynonymous SNV uc009tik.1:c.A1058T:p.Y353F exonic ENSMUSG00000045330 nonsynonymous SNV ENSMUST00000051414:c.A1058T:p.Y353F XqA6 NA NA chrX 59544608 AGTxTCG A T Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 74 0 0 16.86452 0.318182 0.02 -0.19289 15 7 398 195 60 60 0 0 AA 12.027009 40 0 1053 0 KEEP + 4933402E13Rik YES AA_5 chrX 6585026 6585026 T A exonic Ccnb3 nonsynonymous SNV NM_183015:c.A2439T:p.E813D exonic Ccnb3 nonsynonymous SNV uc009slb.1:c.A2439T:p.E813D exonic ENSMUSG00000051592 nonsynonymous SNV ENSMUST00000056725:c.A2439T:p.E813D XqA1.1 NA NA chrX 6585026 GGCxTCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999998 80 0 0 30.520718 0.333333 0.02 -0.341984 26 13 731 351 60 60 0 0 TT 10.226995 34 0 951 0 KEEP - Ccnb3 YES AA_5 chrX 69705004 69705004 T A exonic Gabra3 synonymous SNV NM_008067:c.A702T:p.A234A exonic Gabra3 synonymous SNV uc009tkp.2:c.A702T:p.A234A exonic ENSMUSG00000031343 synonymous SNV ENSMUST00000055966:c.A702T:p.A234A XqA7.3 NA NA chrX 69705004 CTGxGCT T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 122 0 0 7.453331 0.088889 0.02 -0.394585 41 4 1132 114 60 60 0 0 TT 18.646587 62 0 1687 0 KEEP - Gabra3 YES AA_5 chrX 7519012 7519012 T A exonic Hdac6 nonsynonymous SNV NM_001130416:c.A761T:p.H254L exonic Hdac6 nonsynonymous SNV uc009sni.2:c.A761T:p.H254L exonic ENSMUSG00000031161 nonsynonymous SNV ENSMUST00000033501:c.A761T:p.H254L XqA1.1 NA NA chrX 7519012 TGGxGCA T A Ot9362_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index24_GGTAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 73 0 0 10.027697 0.135135 0.02 -0.324416 32 5 880 140 60 60 0 0 TT 8.717135 29 0 765 0 KEEP - Hdac6 YES AA_6 chr10 105278574 105278574 C T exonic Ccdc59 nonsynonymous SNV NM_025602:c.C17T:p.P6L exonic Ccdc59 nonsynonymous SNV uc007gyp.1:c.C17T:p.P6L exonic ENSMUSG00000019897 nonsynonymous SNV ENSMUST00000020049:c.C17T:p.P6L 10qD1 NA NA chr10 105278574 GGCxGTC C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 263 0 0 98.838126 0.322581 0.02 2.30368 84 40 2172 1136 60 60 0 0 CC 29.994516 100 0 2527 0 KEEP + Ccdc59 NO AA_6 chr10 121046187 121046187 T A exonic Xpot nonsynonymous SNV NM_001081056:c.A1175T:p.E392V exonic Xpot nonsynonymous SNV uc007hfv.1:c.A1175T:p.E392V exonic ENSMUSG00000034667 nonsynonymous SNV ENSMUST00000039810:c.A1178T:p.E393V 10qD2 NA NA chr10 121046187 TTTxCAA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 179 0 0 28.134187 0.181818 0.02 0.922153 63 14 1774 373 60 60 0 0 TT 19.852499 66 0 1849 0 KEEP - Xpot YES AA_6 chr10 122561014 122561014 T A exonic Usp15 nonsynonymous SNV NM_027604:c.A2548T:p.T850S exonic Usp15 nonsynonymous SNV uc007hgm.1:c.A766T:p.T256S exonic ENSMUSG00000020124 nonsynonymous SNV ENSMUST00000105259:c.A2461T:p.T821S 10qD2 NA NA chr10 122561014 ATGxATC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 148 0 0 38.152145 0.239437 0.02 1.171586 54 17 1451 470 60 60 0 0 TT 16.233264 54 0 1437 0 KEEP - Usp15 YES AA_6 chr10 129294311 129294311 A T exonic Olfr813 nonsynonymous SNV NM_207147:c.A736T:p.I246F exonic Olfr813 nonsynonymous SNV uc007hqu.1:c.A736T:p.I246F exonic ENSMUSG00000052818 nonsynonymous SNV ENSMUST00000064893:c.A736T:p.I246F 10qD3 NA NA chr10 129294311 GTTxTCT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 214 0 0 165.814493 0.54955 0.02 2.417202 50 61 1337 1699 60 60 0 0 AA 24.045133 80 0 2083 0 KEEP + Olfr813 YES AA_6 chr10 129599782 129599782 A T exonic Olfr825 nonsynonymous SNV NM_146677:c.T599A:p.I200K exonic Olfr825 nonsynonymous SNV uc007hrf.1:c.T599A:p.I200K exonic ENSMUSG00000058084 nonsynonymous SNV ENSMUST00000076814:c.T599A:p.I200K 10qD3 NA NA chr10 129599782 ACTxTTT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 131 0 0 8.492878 0.065789 0.02 1.021407 71 5 1895 141 60 60 0 0 AA 13.531561 45 0 1196 0 KEEP - Olfr825 YES AA_6 chr10 23972245 23972245 A T intronic Moxd1 NA NA intronic Moxd1 NA NA intronic ENSMUSG00000020000 NA NA 10qA4 NA NA chr10 23972245 CATxACA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 66 1 0 6.878489 0.3 0.02 -0.219216 7 3 198 81 60 60 0 0 AA 10.225213 34 0 922 0 KEEP + Moxd1 YES AA_6 chr10 4742299 4742299 T A exonic Myct1 synonymous SNV NM_026793:c.A108T:p.G36G exonic Myct1 synonymous SNV uc007egl.1:c.A108T:p.G36G exonic ENSMUSG00000046916 synonymous SNV ENSMUST00000051809:c.A108T:p.G36G 10qA1 NA NA chr10 4742299 AAAxCCT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 118 0 0 48.162331 0.344262 0.02 1.160691 40 21 1082 552 60 60 0 0 TT 14.972533 50 0 1286 0 KEEP - Myct1 YES AA_6 chr10 51818653 51818653 A T exonic Ros1 nonsynonymous SNV NM_011282:c.T4704A:p.H1568Q exonic Ros1 nonsynonymous SNV uc007fbb.1:c.T4704A:p.H1568Q exonic ENSMUSG00000019893 nonsynonymous SNV ENSMUST00000020045:c.T4704A:p.H1568Q 10qB3 NA NA chr10 51818653 TACxTGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522089 0.522161 0.999863 45 0 0 26.031633 0.434783 0.02 -0.210452 13 10 356 281 60 60 0 0 AA 6.014368 20 0 536 0 KEEP - Ros1 YES AA_6 chr10 59790202 59790202 A T exonic Cdh23 nonsynonymous SNV NM_001252635:c.T5834A:p.V1945E exonic Cdh23 nonsynonymous SNV uc011xeh.1:c.T338A:p.V113E exonic ENSMUSG00000012819 nonsynonymous SNV ENSMUST00000073242:c.T5837A:p.V1946E 10qB4 NA NA chr10 59790202 GATxCCA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 132 0 0 48.745243 0.3 0.02 1.180209 49 21 1291 573 60 60 0 0 AA 11.887525 43 1 1127 9 KEEP - Cdh23 YES AA_6 chr10 79770233 79770233 A T exonic Apc2 nonsynonymous SNV NM_011789:c.A1334T:p.K445M exonic Apc2 nonsynonymous SNV uc007gcp.1:c.A1334T:p.K445M exonic ENSMUSG00000020135 nonsynonymous SNV ENSMUST00000020349:c.A1334T:p.K445M 10qC1 NA NA chr10 79770233 ACAxGAT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693638 0.693668 0.999957 59 0 0 10.20013 0.172414 0.02 -0.263023 24 5 661 136 60 60 0 0 AA 7.820022 26 0 721 0 KEEP + Apc2 YES AA_6 chr10 80069141 80069141 C G exonic Adat3 nonsynonymous SNV NM_001100606:c.C67G:p.P23A exonic Adat3 nonsynonymous SNV uc007gdx.1:c.C67G:p.P23A exonic ENSMUSG00000035370 nonsynonymous SNV ENSMUST00000038411:c.C67G:p.P23A 10qC1 NA NA chr10 80069141 GAGxCGG C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981888 0.981955 0.999931 86 2 0 11.641333 0.105263 0.02 1.19542 51 6 1405 171 60 60 0 0 CC 7.165317 24 0 615 0 KEEP + Adat3 NO AA_6 chr10 80345420 80345420 A T exonic Tmprss9 synonymous SNV NM_001081688:c.A189T:p.A63A exonic Tmprss9 synonymous SNV uc007gfg.1:c.A189T:p.A63A exonic ENSMUSG00000059406 synonymous SNV ENSMUST00000049491:c.A189T:p.A63A 10qC1 NA NA chr10 80345420 AGCxGAG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 134 0 0 83.445034 0.426667 0.02 1.029071 43 32 1197 904 60 60 0 0 AA 13.835845 46 0 1274 0 KEEP + Tmprss9 YES AA_6 chr10 80774344 80774344 G C intronic Pip5k1c NA NA intronic Pip5k1c NA NA intronic ENSMUSG00000034902 NA NA 10qC1 NA NA chr10 80774344 TGAxCCT G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 185 0 0 32.586806 0.164948 0.02 0.845023 81 16 2259 438 60 60 0 0 GG 19.252707 64 0 1827 0 KEEP + Pip5k1c NO AA_6 chr10 81088470 81088470 C G exonic Sirt6 nonsynonymous SNV NM_001163430:c.G248C:p.G83A exonic Sirt6 nonsynonymous SNV uc007giy.2:c.G368C:p.G123A exonic ENSMUSG00000034748 nonsynonymous SNV ENSMUST00000042923:c.G368C:p.G123A 10qC1 NA NA chr10 81088470 AAGxCCG C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 88 0 0 9.905378 0.128205 0.02 -0.341922 34 5 930 140 60 60 0 0 CC 12.029575 40 0 1099 0 KEEP - Sirt6 NO AA_6 chr11 100104971 100104971 A T intergenic "Krt14(dist=36147),Krt16(dist=2435)" NA NA intergenic "Krt14(dist=36147),Krt16(dist=2435)" NA NA downstream ENSMUSG00000082456 NA NA 11qD NA NA chr11 100104971 CCCxTTC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076761 0.077336 0.99257 19 2 0 10.423393 0.444444 0.02 -0.078905 5 4 129 112 60 60 0 0 AA 2.40576 8 0 214 0 KEEP NA Krt14 YES AA_6 chr11 105778332 105778332 G C exonic Tanc2 synonymous SNV NM_181071:c.G3873C:p.V1291V exonic Tanc2 synonymous SNV uc007lxo.1:c.G2595C:p.V865V exonic ENSMUSG00000053580 synonymous SNV ENSMUST00000100330:c.G3873C:p.V1291V 11qE1 NA NA chr11 105778332 AGTxTCT G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 59 0 0 11.781494 0.238095 0.02 -0.184133 16 5 437 144 60 60 0 0 GG 9.309219 31 0 855 0 KEEP + Tanc2 NO AA_6 chr11 118358308 118358308 A T exonic Rbfox3 synonymous SNV NM_001024931:c.T699A:p.A233A exonic Rbfox3 synonymous SNV uc011yiq.1:c.T699A:p.A233A exonic ENSMUSG00000025576 synonymous SNV ENSMUST00000154746:c.T348A:p.A116A 11qE2 NA NA chr11 118358308 CACxGCA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 91 4 0 37.275181 0.466667 0.02 -0.263075 16 14 447 396 60 60 0 0 AA 12.93333 43 0 1188 0 KEEP - Rbfox3 YES AA_6 chr11 48927045 48927045 T A exonic Olfr1396 nonsynonymous SNV NM_146337:c.A215T:p.Y72F exonic Olfr1396 nonsynonymous SNV uc007ipr.1:c.A215T:p.Y72F exonic ENSMUSG00000047511 nonsynonymous SNV ENSMUST00000060398:c.A215T:p.Y72F 11qB1.2 NA NA chr11 48927045 AAGxACA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 119 0 0 39.391548 0.608696 0.02 -0.201668 9 14 240 394 60 60 0 0 TT 24.953774 83 0 2191 0 KEEP + Olfr1396 YES AA_6 chr11 50669233 50669233 T C exonic Grm6 nonsynonymous SNV NM_173372:c.T887C:p.L296P exonic Grm6 nonsynonymous SNV uc007isu.2:c.T887C:p.L296P exonic ENSMUSG00000000617 nonsynonymous SNV ENSMUST00000000631:c.T887C:p.L296P 11qB1.3 NA NA chr11 50669233 TCCxGTG T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.83564 0.835716 0.999909 69 0 0 13.45165 0.189189 0.02 -0.324435 30 7 854 179 60 60 0 0 TT 7.219192 24 0 673 0 KEEP + Grm6 NO AA_6 chr11 55840710 55840710 T A exonic Nmur2 synonymous SNV NM_153079:c.A954T:p.I318I exonic Nmur2 synonymous SNV uc007izq.1:c.A954T:p.I318I exonic ENSMUSG00000037393 synonymous SNV ENSMUST00000037682:c.A954T:p.I318I 11qB1.3 NA NA chr11 55840710 ATAxATA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.421506 0.423478 0.995343 39 1 0 10.783218 0.238095 0.02 -0.184016 16 5 409 134 60 60 0 0 TT 4.157821 14 0 337 0 KEEP - Nmur2 YES AA_6 chr11 55840711 55840711 A T exonic Nmur2 nonsynonymous SNV NM_153079:c.T953A:p.I318K exonic Nmur2 nonsynonymous SNV uc007izq.1:c.T953A:p.I318K exonic ENSMUSG00000037393 nonsynonymous SNV ENSMUST00000037682:c.T953A:p.I318K 11qB1.3 NA NA chr11 55840711 TATxTAA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 37 1 0 11.402635 0.25 0.02 -0.175368 15 5 408 139 60 60 0 0 AA 3.90887 13 0 344 0 KEEP - Nmur2 YES AA_6 chr11 60593652 60593652 C T exonic Smcr8 nonsynonymous SNV NM_001085440:c.C2123T:p.A708V exonic Smcr8 nonsynonymous SNV uc007jgn.1:c.C2123T:p.A708V exonic ENSMUSG00000049323 nonsynonymous SNV ENSMUST00000056907:c.C2123T:p.A708V 11qB2 NA NA chr11 60593652 ATGxCTT C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 92 0 0 8.296143 0.133333 0.02 -0.263074 26 4 726 115 60 60 0 0 CC 14.134956 47 0 1294 0 KEEP + Smcr8 NO AA_6 chr11 70208404 70208404 G C exonic Pelp1 nonsynonymous SNV NM_029231:c.C2139G:p.N713K exonic Pelp1 nonsynonymous SNV uc007jup.2:c.C2139G:p.N713K exonic ENSMUSG00000018921 nonsynonymous SNV ENSMUST00000019065:c.C2139G:p.N713K 11qB3 NA NA chr11 70208404 ATGxTTG G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888874 0.888875 0.999999 82 2 0 15.206891 0.170732 0.02 -0.35945 34 7 935 200 60 60 0 0 GG 10.827813 36 0 998 0 KEEP - Pelp1 NO AA_6 chr11 72635414 72635414 G C exonic Zzef1 synonymous SNV NM_001045536:c.G657C:p.L219L exonic Zzef1 synonymous SNV uc007jzk.2:c.G657C:p.L219L exonic ENSMUSG00000055670 synonymous SNV ENSMUST00000069395:c.G657C:p.L219L 11qB4 NA NA chr11 72635414 TCTxAAG G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 57 0 0 12.413399 0.294118 0.02 -0.149091 12 5 346 145 60 60 0 0 GG 9.626646 32 0 920 0 KEEP + Zzef1 NO AA_6 chr11 8910315 8910315 G A exonic Hus1 stopgain SNV NM_008316:c.C286T:p.Q96X exonic Hus1 stopgain SNV uc007hzp.1:c.C223T:p.Q75X exonic ENSMUSG00000020413 stopgain SNV ENSMUST00000020683:c.C286T:p.Q96X 11qA1 NA NA chr11 8910315 TCTxGGC G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.64132 0.641347 0.999957 60 0 0 47.256908 0.607143 0.02 -0.245532 11 17 314 473 60 60 0 0 GG 7.821519 26 0 744 0 KEEP - Hus1 NO AA_6 chr12 105218666 105218666 T A exonic Serpina11 synonymous SNV NM_001166350:c.A1179T:p.P393P exonic Serpina11 synonymous SNV uc007owm.2:c.A1185T:p.P395P exonic ENSMUSG00000063232 synonymous SNV ENSMUST00000074693:c.A1185T:p.P395P 12qE NA NA chr12 105218666 CTGxGGG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260954 0.260965 0.999957 47 0 0 51.719783 1 0.02 -0.140286 0 16 0 441 0 60 0 0 TT 7.784906 26 0 684 0 KEEP - Serpina11 YES AA_6 chr12 114302147 114302147 G C exonic Pacs2 nonsynonymous SNV NM_001081170:c.G1989C:p.K663N exonic Pacs2 nonsynonymous SNV uc007pfs.1:c.G792C:p.K264N exonic ENSMUSG00000021143 nonsynonymous SNV ENSMUST00000168021:c.G243C:p.K81N 12qF1 NA NA chr12 114302147 GAAxAGG G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 78 0 0 26.625567 0.305556 0.02 -0.315704 25 11 717 310 60 60 0 0 GG 11.431536 38 0 1089 0 KEEP + Pacs2 NO AA_6 chr12 32327660 32327660 T A exonic Dus4l nonsynonymous SNV NM_028002:c.A448T:p.S150C exonic Dus4l nonsynonymous SNV uc007nhr.1:c.A448T:p.S150C exonic ENSMUSG00000020648 nonsynonymous SNV ENSMUST00000020977:c.A448T:p.S150C 12qA3 NA NA chr12 32327660 GGCxTTC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 41 0 0 19.340055 0.444444 0.02 -0.157792 10 8 287 209 60 60 0 0 TT 6.015644 20 0 555 0 KEEP - Dus4l YES AA_6 chr12 60169344 60169344 T C intronic Pnn NA NA intronic Pnn NA NA intronic ENSMUSG00000020994 NA NA 12qC1 NA NA chr12 60169344 GTAxGGT T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 50 0 0 22.887423 0.555556 0.02 -0.157742 8 10 223 235 60 60 0 0 TT 8.716075 29 0 775 0 KEEP + Pnn NO AA_6 chr12 62940773 62940773 G C exonic Lrfn5 nonsynonymous SNV NM_178714:c.G359C:p.S120T exonic Lrfn5 nonsynonymous SNV uc007nqm.1:c.G359C:p.S120T exonic ENSMUSG00000035653 nonsynonymous SNV ENSMUST00000055815:c.G359C:p.S120T 12qC1 NA NA chr12 62940773 TCAxTGG G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 164 0 0 7.400689 0.081633 0.02 -0.429346 45 4 1228 115 60 60 0 0 GG 27.671681 92 0 2554 0 KEEP + Lrfn5 NO AA_6 chr12 8308483 8308483 T A exonic Gdf7 nonsynonymous SNV NM_013527:c.A257T:p.H86L exonic Gdf7 nonsynonymous SNV uc007mzl.1:c.A257T:p.H86L exonic ENSMUSG00000037660 nonsynonymous SNV ENSMUST00000037313:c.A257T:p.H86L 12qA1.1 NA NA chr12 8308483 AAGxGGT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119541 0.120436 0.99257 22 0 0 31.812084 0.909091 0.02 -0.096466 1 10 28 285 60 60 0 0 TT 2.405969 8 0 217 0 KEEP - Gdf7 YES AA_6 chr12 85954806 85954806 G A intronic Abcd4 NA NA intronic Abcd4 NA NA intronic ENSMUSG00000021240 NA NA 12qD1 NA NA chr12 85954806 CTTxGAT G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999999 72 0 0 58.442195 0.677419 0.02 -0.271815 10 21 283 569 60 60 0 0 GG 10.528227 35 0 990 0 KEEP - Abcd4 NO AA_6 chr12 86815140 86815140 G C intronic Fos NA NA intronic Fos NA NA intronic ENSMUSG00000021250 NA NA 12qD2 NA NA chr12 86815140 TTGxCTT G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 107 1 0 32.612745 0.40625 0.02 -0.280582 19 13 527 358 60 60 0 0 GG 17.998416 60 0 1603 0 KEEP + Fos NO AA_6 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 281 6 91 12.64299 0.079545 0.02 0.897342 81 7 2292 199 55 29 0 0 CC 42.407478 141 0 3985 0 KEEP - Gm2042 NO AA_6 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 338 7 91 13.359563 0.103093 0.02 0.720676 87 10 2398 225 60 37 0 0 TT 52.605102 175 0 4658 0 KEEP - Gm2042 NO AA_6 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 305 8 41 28.474002 0.145833 0.02 0.82713 82 14 2265 391 60 60 0 0 TT 54.737132 182 0 4974 0 KEEP - Gm2042 NO AA_6 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 90 2 0 20.504531 0.25 0.02 -0.315673 27 9 746 250 60 60 0 0 CC 13.23384 44 0 1211 0 KEEP - Gm2042 NO AA_6 chr13 19282476 19282476 T A intergenic "Amph(dist=39692),Stard3nl(dist=167069)" NA NA ncRNA_intronic AK040028 NA NA intronic ENSMUSG00000076746 NA NA 13qA2 NA NA chr13 19282476 TCTxTCA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 35 0 0 16.915636 0.35 0.02 -0.175382 13 7 367 192 60 60 0 0 TT 3.909316 13 0 355 0 KEEP - Amph YES AA_6 chr13 19352760 19352760 A T intergenic "Amph(dist=109976),Stard3nl(dist=96785)" NA NA intergenic "Z22835(dist=17592),Tcrg(dist=43761)" NA NA exonic ENSMUSG00000091682 nonsynonymous SNV ENSMUST00000164407:c.A8T:p.K3M 13qA2 "Score=0.946576;Name=No.32640,chr13:19299449" NA chr13 19352760 AAAxGCT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 107 3 1 17.033159 0.216216 0.02 -0.341835 29 8 787 216 60 60 0 0 AA 16.543887 55 0 1542 0 KEEP NA Amph YES AA_6 chr13 41013702 41013702 G C exonic Gcnt2 nonsynonymous SNV NM_133219:c.G451C:p.A151P exonic Gcnt2 nonsynonymous SNV uc007qen.1:c.G451C:p.A151P exonic ENSMUSG00000021360 nonsynonymous SNV ENSMUST00000067778:c.G451C:p.A151P 13qA3.3 NA NA chr13 41013702 CTGxCCT G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 340 1 0 11.742147 0.072165 0.02 0.844674 90 7 2500 193 60 60 0 0 GG 61.307018 204 0 5530 0 KEEP + Gcnt2 NO AA_6 chr13 41860202 41860202 T A intronic Adtrp NA NA intronic 9530008L14Rik NA NA intronic ENSMUSG00000058022 NA NA 13qA4 NA NA chr13 41860202 CCCxAAG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 89 0 0 7.610529 0.108108 0.02 -0.324375 33 4 889 112 60 60 0 0 TT 12.630485 42 0 1132 0 KEEP - Adtrp YES AA_6 chr13 4242188 4242188 T A exonic Akr1c19 synonymous SNV NM_001013785:c.T696A:p.S232S exonic Akr1c19 synonymous SNV uc007pjm.2:c.T696A:p.S232S exonic ENSMUSG00000071551 synonymous SNV ENSMUST00000081326:c.T696A:p.S232S 13qA1 NA NA chr13 4242188 CTCxCCA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 78 0 0 29.453488 0.4 0.02 -0.263061 18 12 513 325 60 60 0 0 TT 11.430906 38 0 1076 0 KEEP + Akr1c19 YES AA_6 chr13 55522424 55522424 G C exonic F12 nonsynonymous SNV NM_021489:c.C885G:p.C295W exonic F12 nonsynonymous SNV uc007qqv.2:c.C885G:p.C295W exonic ENSMUSG00000021492 nonsynonymous SNV ENSMUST00000021948:c.C885G:p.C295W 13qB1 NA NA chr13 55522424 CTGxCAC G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 227 0 0 7.920758 0.053191 0.02 0.77324 89 5 2457 140 60 60 0 0 GG 32.119894 107 0 2921 0 KEEP - F12 NO AA_6 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 182 0 3 10.285062 0.4 0.02 -0.166621 6 4 174 113 60 29 0 0 CC 38.806443 129 0 3718 0 KEEP NA BC052688 NO AA_6 chr13 62108438 62108438 G C intergenic "BC052688(dist=219796),Zfp808(dist=122812)" NA NA intergenic "AK006455(dist=180554),A130040M12Rik(dist=76069)" NA NA intergenic "ENSMUSG00000080451(dist=183414),ENSMUSG00000092904(dist=1389)" NA NA 13qB3 "Score=0.960103;Name=No.33008,chr13:61865990" NA chr13 62108438 ACAxATG G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162452 0.162467 0.999909 38 0 0 7.082182 0.230769 0.02 -0.114013 10 3 291 87 60 41 0 0 GG 7.219695 24 0 687 0 KEEP NA BC052688 NO AA_6 chr13 62489262 62489262 C G intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "ENSMUSG00000089002(dist=2850),ENSMUSG00000055228(dist=66421)" NA NA 13qB3 "Score=0.952824;Name=No.33007,chr13:61865461" NA chr13 62489262 TGTxCAA C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 223 0 0 12.302521 0.12 0.02 -0.438264 44 6 1235 174 60 36 0 0 CC 41.211337 137 0 3888 0 KEEP NA Gm3604 NO AA_6 chr13 65296063 65296063 G A exonic Nlrp4f nonsynonymous SNV NM_175290:c.C1075T:p.P359S exonic Nlrp4f nonsynonymous SNV uc007qzf.1:c.C1075T:p.P359S exonic ENSMUSG00000032999 nonsynonymous SNV ENSMUST00000037372:c.C1075T:p.P359S 13qB3 "Score=0.903195;Name=No.40125,chr9_random:127976" NA chr13 65296063 CTGxGTC G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 204 0 0 10.16693 0.068182 0.02 0.923743 82 6 2278 168 60 60 0 0 GG 31.457171 105 0 2876 0 KEEP - Nlrp4f NO AA_6 chr13 65442490 65442490 A G intergenic "Zfp369(dist=43387),Gm10324(dist=771899)" NA NA intergenic "Zfp369(dist=43387),AK145544(dist=57800)" NA NA intergenic "ENSMUSG00000021514(dist=36961),ENSMUSG00000090514(dist=38211)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442490 ACCxTGT A G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 157 4 18 7.797323 0.173913 0.02 -0.271803 19 4 517 105 60 23 0 0 AA 30.674498 102 0 2747 0 KEEP NA Zfp369 NO AA_6 chr13 65442544 65442544 C A intergenic "Zfp369(dist=43441),Gm10324(dist=771845)" NA NA intergenic "Zfp369(dist=43441),AK145544(dist=57746)" NA NA intergenic "ENSMUSG00000021514(dist=37015),ENSMUSG00000090514(dist=38157)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442544 AACxTTT C A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 95 3 28 10.53039 0.571429 0.02 -0.114 3 4 86 107 29 23 0 0 CC 20.154559 67 0 1920 0 KEEP NA Zfp369 NO AA_6 chr13 66955894 66955894 A G intergenic "2410141K09Rik(dist=413840),Uqcrb(dist=45663)" NA NA intergenic "AK049212(dist=101975),Uqcrb(dist=45663)" NA NA splicing ENSMUSG00000071295(ENSMUST00000079229:exon2:c.3+2T>C) NA NA 13qB3 "Score=0.980557;Name=No.34397,chr13:66750246" NA chr13 66955894 ATCxCCA A G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 185 2 27 11.079029 0.625 0.02 -0.07883 3 5 75 110 23 23 0 0 AA 41.491178 138 0 3682 0 KEEP NA 2410141K09Rik NO AA_6 chr13 67772577 67772577 A T intronic Zfp738 NA NA intronic Zfp738 NA NA intronic ENSMUSG00000048280 NA NA 13qB3 "Score=0.942784;Name=No.34482,chr13:67718617" NA chr13 67772577 GTGxAGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 217 5 0 8.413921 0.079365 0.02 1.018603 58 5 1628 136 60 39 0 0 AA 35.794329 119 0 3323 0 KEEP - Zfp738 YES AA_6 chr13 73765043 73765043 A T exonic Tert nonsynonymous SNV NM_009354:c.A464T:p.H155L exonic Tert nonsynonymous SNV uc007rdp.1:c.A464T:p.H155L exonic ENSMUSG00000021611 nonsynonymous SNV ENSMUST00000022104:c.A464T:p.H155L 13qC1 NA NA chr13 73765043 CACxCTG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 51 0 0 32.092839 0.571429 0.02 -0.184123 9 12 244 326 60 60 0 0 AA 8.42042 28 0 754 0 KEEP + Tert YES AA_6 chr13 76827869 76827869 T A exonic Mctp1 nonsynonymous SNV NM_030174:c.T182A:p.L61H exonic Mctp1 nonsynonymous SNV uc007rgn.1:c.T182A:p.L61H exonic ENSMUSG00000021596 nonsynonymous SNV ENSMUST00000046098:c.T182A:p.L61H 13qC1 NA NA chr13 76827869 ATCxTAG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 79 0 0 49.824554 0.6 0.02 -0.262918 12 18 321 500 60 60 0 0 TT 11.430253 38 0 1064 0 KEEP + Mctp1 YES AA_6 chr13 91038374 91038374 T A exonic Atp6ap1l synonymous SNV NM_001145879:c.A288T:p.I96I exonic Atp6ap1l synonymous SNV uc011zcl.1:c.A288T:p.I96I exonic ENSMUSG00000078958 synonymous SNV ENSMUST00000109541:c.A288T:p.I96I 13qC3 NA NA chr13 91038374 GAGxATG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099505 0.099721 0.997832 33 0 0 13.574737 0.5 0.02 -0.087686 5 5 134 142 60 60 0 0 TT 4.810508 16 0 416 0 KEEP - Atp6ap1l YES AA_6 chr13 96427858 96427858 T A exonic Iqgap2 nonsynonymous SNV NM_027711:c.A3560T:p.E1187V exonic Iqgap2 nonsynonymous SNV uc007rmo.1:c.A3560T:p.E1187V exonic ENSMUSG00000021676 nonsynonymous SNV ENSMUST00000068603:c.A3560T:p.E1187V 13qD1 NA NA chr13 96427858 GGTxCAG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 78 0 0 23.105268 0.322581 0.02 -0.280585 21 10 586 268 60 60 0 0 TT 12.029886 40 0 1094 0 KEEP - Iqgap2 YES AA_6 chr14 104242305 104242305 T A exonic Ednrb nonsynonymous SNV NM_001276296:c.A389T:p.K130M exonic Ednrb nonsynonymous SNV uc007uww.2:c.A389T:p.K130M exonic ENSMUSG00000022122 nonsynonymous SNV ENSMUST00000172237:c.A389T:p.K130M 14qE2.3 NA NA chr14 104242305 CACxTGT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 57 0 0 7.793696 0.148148 0.02 -0.236774 23 4 655 108 60 60 0 0 TT 7.519273 25 0 690 0 KEEP - Ednrb YES AA_6 chr14 20420773 20420773 T A exonic Gm5458 nonsynonymous SNV NM_001024706:c.A236T:p.D79V exonic Gm5458 nonsynonymous SNV uc011zgi.1:c.A236T:p.D79V exonic ENSMUSG00000071574 nonsynonymous SNV ENSMUST00000096121:c.A236T:p.D79V 14qA3 "Score=0.986572;Name=No.49681,chr14:7155478" NA chr14 20420773 ATGxCAT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 1061 123 437 78.95453 0.336735 0.02 0.827132 65 33 1794 904 23 37 0 0 TT 212.934432 708 0 19576 0 KEEP - Gm5458 YES AA_6 chr14 20436584 20436584 G A intergenic "Gm5458(dist=14775),Nid2(dist=133895)" NA NA ncRNA_intronic AK019641 NA NA ncRNA_exonic ENSMUSG00000068776 NA NA 14qA3 "Score=0.983121;Name=No.43476,chr14:3877298" NA chr14 20436584 AATxTCC G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 72 2 1 6.98136 0.190476 0.02 -0.183916 17 4 461 95 60 29 0 0 GG 10.827449 36 0 1003 0 KEEP + Gm5458 NO AA_6 chr14 23858488 23858488 A T ncRNA_exonic Gm10248 NA NA ncRNA_exonic Gm10248 NA NA ncRNA_exonic ENSMUSG00000068680 NA NA 14qA3 NA NA chr14 23858488 AGAxAGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999997 76 0 0 96.712898 0.790698 0.02 -0.376969 9 34 254 901 60 60 0 0 AA 9.620406 32 0 875 0 KEEP + Gm10248 YES AA_6 chr14 30146913 30146913 A T exonic Cacna2d3 synonymous SNV NM_009785:c.T945A:p.A315A exonic Cacna2d3 synonymous SNV uc007sui.1:c.T945A:p.A315A exonic ENSMUSG00000021991 synonymous SNV ENSMUST00000022567:c.T945A:p.A315A 14qB NA NA chr14 30146913 GTCxGCT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 136 0 0 10.252292 0.125 0.02 -0.349784 35 5 964 144 60 60 0 0 AA 20.453822 68 0 1897 0 KEEP - Cacna2d3 YES AA_6 chr14 32119117 32119117 A T exonic Dnah1 nonsynonymous SNV NM_001033668:c.T1946A:p.V649E exonic Dnahc1 nonsynonymous SNV uc007sxk.2:c.T1946A:p.V649E exonic ENSMUSG00000019027 nonsynonymous SNV ENSMUST00000048603:c.T1946A:p.V649E 14qB NA NA chr14 32119117 AGCxCCA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 92 0 0 23.164579 0.263158 0.02 -0.333059 28 10 757 279 60 60 0 0 AA 13.833952 46 0 1243 0 KEEP - Dnah1 YES AA_6 chr14 35839948 35839948 A C exonic Grid1 nonsynonymous SNV NM_008166:c.A538C:p.S180R exonic Grid1 nonsynonymous SNV uc007tbj.1:c.A538C:p.S180R exonic ENSMUSG00000041078 nonsynonymous SNV ENSMUST00000043349:c.A538C:p.S180R 14qB NA NA chr14 35839948 CAAxGCT A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353898 0.353947 0.999863 43 0 0 15.806971 0.368421 0.02 -0.166582 12 7 335 179 60 60 0 0 AA 6.015382 20 0 551 0 KEEP + Grid1 NO AA_6 chr14 50548366 50548366 A T exonic Olfr723 synonymous SNV NM_001011530:c.T852A:p.P284P exonic Olfr723 synonymous SNV uc007tkm.2:c.T852A:p.P284P exonic ENSMUSG00000090343 synonymous SNV ENSMUST00000164157:c.T852A:p.P284P 14qC1 "Score=0.939885;Name=No.53336,chr14:50574284" NA chr14 50548366 AATxGGA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 106 1 14 27.697966 0.366667 0.02 -0.262643 19 11 505 310 60 60 0 0 AA 18.345654 61 0 1665 0 KEEP - Olfr723 YES AA_6 chr14 51464646 51464646 T A splicing Tep1(NM_009351:exon24:c.3249-2A>T) NA NA splicing Tep1(uc007tlt.1:exon24:c.3249-2A>T) NA NA splicing ENSMUSG00000006281(ENSMUST00000006444:exon24:c.3249-2A>T) NA NA 14qC1 NA NA chr14 51464646 AGCxATA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 145 0 0 19.86305 0.236842 0.02 -0.420875 29 9 806 246 60 60 0 0 TT 22.84998 76 0 2044 0 KEEP - Tep1 YES AA_6 chr14 56482228 56482228 G T exonic Nynrin nonsynonymous SNV NM_001040072:c.G637T:p.G213C exonic Nynrin nonsynonymous SNV uc007uaz.2:c.G637T:p.G213C exonic ENSMUSG00000075592 nonsynonymous SNV ENSMUST00000168479:c.G637T:p.G213C 14qC3 NA NA chr14 56482228 TCTxGTA G T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260962 0.260965 0.999988 47 0 0 9.306132 0.25 0.02 -0.140048 12 4 314 113 60 60 0 0 GG 8.120597 27 0 750 0 KEEP + Nynrin NO AA_6 chr14 57532838 57532838 A T exonic Zmym2 nonsynonymous SNV NM_029498:c.A1342T:p.S448C exonic Zmym2 nonsynonymous SNV uc007uct.2:c.A1342T:p.S448C exonic ENSMUSG00000021945 nonsynonymous SNV ENSMUST00000022511:c.A1342T:p.S448C 14qC3 NA NA chr14 57532838 TGCxGTG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58286 0.58293 0.999879 55 0 0 49.128547 0.653846 0.02 -0.227942 9 17 247 483 60 60 0 0 AA 6.616863 22 0 604 0 KEEP + Zmym2 YES AA_6 chr14 6152507 6152507 T A intergenic "Gm3383(dist=218954),Gm3494(dist=299227)" NA NA intronic "Gm10406,Gm2897" NA NA exonic ENSMUSG00000091568 nonsynonymous SNV ENSMUST00000171428:c.A385T:p.N129Y 14qA1 "Score=0.976439;Name=No.41728,chr14:3066615" NA chr14 6152507 TGTxCCT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 437 0 167 32.368291 0.333333 0.02 -0.39459 28 14 783 373 36 36 0 0 TT 98.00466 326 0 8992 0 KEEP - Gm3383 YES AA_6 chr14 70931089 70931089 C G intronic Lgi3 NA NA intronic Lgi3 NA NA intronic ENSMUSG00000033595 NA NA 14qD2 NA NA chr14 70931089 CTAxCTA C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 56 0 0 11.310125 0.25 0.02 -0.174903 15 5 390 138 60 60 0 0 CC 8.121814 27 0 762 0 KEEP + Lgi3 NO AA_6 chr14 88522872 88522872 A T intergenic "Tdrd3(dist=577557),Pcdh20(dist=341682)" NA NA intergenic "Tdrd3(dist=577557),Pcdh20(dist=341682)" NA NA exonic ENSMUSG00000062611 synonymous SNV ENSMUST00000074245:c.T744A:p.A248A 14qE1 NA NA chr14 88522872 CTTxGCA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 105 0 12 76.647734 0.833333 0.02 -0.263078 5 25 140 706 37 60 0 0 AA 16.840938 56 0 1518 0 KEEP NA Tdrd3 YES AA_6 chr15 101522979 101522979 A C exonic Krt6a nonsynonymous SNV NM_008476:c.T812G:p.V271G exonic Krt6a nonsynonymous SNV uc007xtv.1:c.T812G:p.V271G exonic ENSMUSG00000058354 nonsynonymous SNV ENSMUST00000023788:c.T812G:p.V271G 15qF2 "Score=0.925956;Name=No.57830,chr15:101506958" NA chr15 101522979 TCAxCTT A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 120 0 0 27.560192 0.178082 0.02 1.055231 60 13 1623 362 60 60 0 0 AA 12.932236 43 0 1170 0 KEEP - Krt6a NO AA_6 chr15 52138046 52138046 G T exonic Slc30a8 nonsynonymous SNV NM_172816:c.G113T:p.G38V exonic Slc30a8 nonsynonymous SNV uc007vrf.1:c.G113T:p.G38V exonic ENSMUSG00000022315 nonsynonymous SNV ENSMUST00000037240:c.G113T:p.G38V 15qC NA NA chr15 52138046 CTGxAGA G T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 301 4 0 26.270799 0.130841 0.02 2.256634 93 14 2636 376 60 60 0 0 GG 43.540727 145 0 4050 0 KEEP + Slc30a8 NO AA_6 chr15 52138051 52138051 A T exonic Slc30a8 nonsynonymous SNV NM_172816:c.A118T:p.R40W exonic Slc30a8 nonsynonymous SNV uc007vrf.1:c.A118T:p.R40W exonic ENSMUSG00000022315 nonsynonymous SNV ENSMUST00000037240:c.A118T:p.R40W 15qC NA NA chr15 52138051 GACxGGC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 291 2 0 78.775765 0.301887 0.02 2.55917 74 32 2103 917 60 60 0 0 AA 42.107438 140 0 3868 0 KEEP + Slc30a8 YES AA_6 chr15 54890434 54890434 G A exonic Taf2 synonymous SNV NM_001081288:c.C1011T:p.D337D exonic Taf2 synonymous SNV uc007vrv.1:c.C504T:p.D168D exonic ENSMUSG00000037343 synonymous SNV ENSMUST00000041733:c.C1011T:p.D337D 15qD1 NA NA chr15 54890434 CTCxTCT G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 74 2 0 21.439801 0.3 0.02 -0.262889 21 9 528 251 60 60 0 0 GG 10.816809 36 0 913 0 KEEP - Taf2 NO AA_6 chr15 75799789 75799789 A T UTR5 Zfp707 NA NA exonic Zfp707 synonymous SNV uc007whw.1:c.A63T:p.R21R exonic ENSMUSG00000034429 synonymous SNV ENSMUST00000109966:c.A63T:p.R21R 15qD3 NA NA chr15 75799789 CCGxCGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 75 1 0 8.670261 0.190476 0.02 -0.184116 17 4 455 112 60 60 0 0 AA 11.723885 39 0 1036 0 KEEP + Zfp707 YES AA_6 chr15 76008215 76008215 T A exonic Plec nonsynonymous SNV NM_011117:c.A8104T:p.T2702S exonic Plec nonsynonymous SNV uc007wir.2:c.A8017T:p.T2673S exonic ENSMUSG00000022565 nonsynonymous SNV ENSMUST00000023226:c.A8017T:p.T2673S 15qD3 NA NA chr15 76008215 TGGxGTG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 156 1 0 45.763912 0.287879 0.02 1.116521 47 19 1285 539 60 60 0 0 TT 20.744421 69 0 1837 0 KEEP - Plec YES AA_6 chr15 76009849 76009849 C G exonic Plec nonsynonymous SNV NM_011117:c.G6603C:p.E2201D exonic Plec nonsynonymous SNV uc007wir.2:c.G6516C:p.E2172D exonic ENSMUSG00000022565 nonsynonymous SNV ENSMUST00000023226:c.G6516C:p.E2172D 15qD3 NA NA chr15 76009849 CTGxTCT C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 176 0 0 7.528748 0.060976 0.02 0.772231 77 5 2156 133 60 60 0 0 CC 22.318228 78 1 2227 10 KEEP - Plec NO AA_6 chr15 77254354 77254354 C T exonic Apol7b nonsynonymous SNV NM_001024848:c.G370A:p.V124M exonic Apol7b nonsynonymous SNV uc007wnp.1:c.G370A:p.V124M exonic ENSMUSG00000068252 nonsynonymous SNV ENSMUST00000089469:c.G370A:p.V124M 15qE1 "Score=0.973609;Name=No.57805,chr15:77487906" NA chr15 77254354 TCAxCCG C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 354 0 0 13.967039 0.06338 0.02 2.04739 133 9 3716 242 60 60 0 0 CC 48.123966 160 0 4425 0 KEEP - Apol7b NO AA_6 chr15 78617934 78617934 A C intronic Card10 NA NA intronic Card10 NA NA intronic ENSMUSG00000033170 NA NA 15qE1 NA NA chr15 78617934 AGAxGTT A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.712749 0.717315 0.993634 45 0 0 7.947816 0.16129 0.02 -0.271773 26 5 733 115 60 60 0 0 AA 3.609503 12 0 335 0 KEEP - Card10 NO AA_6 chr15 78832567 78832567 A T exonic Triobp nonsynonymous SNV NM_001024716:c.A1454T:p.Q485L exonic Triobp nonsynonymous SNV uc007wsa.1:c.A1454T:p.Q485L exonic ENSMUSG00000033088 nonsynonymous SNV ENSMUST00000041035:c.A1313T:p.Q438L 15qE1 NA NA chr15 78832567 GGCxGGC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990963 0.990964 0.999999 114 0 0 104.186128 0.596774 0.02 1.249828 25 37 708 1047 60 60 0 0 AA 10.819551 36 0 968 0 KEEP + Triobp YES AA_6 chr15 85074733 85074733 A T exonic Fbln1 nonsynonymous SNV NM_010180:c.A1700T:p.D567V exonic Fbln1 nonsynonymous SNV uc007xdb.2:c.A1700T:p.D567V exonic ENSMUSG00000006369 nonsynonymous SNV ENSMUST00000057410:c.A1700T:p.D567V 15qE2 NA NA chr15 85074733 CAGxCAC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 173 2 0 64.967565 0.3375 0.02 0.993757 53 27 1457 743 60 60 0 0 AA 21.948812 73 0 1955 0 KEEP + Fbln1 YES AA_6 chr16 11203272 11203272 G T exonic Rsl1d1 nonsynonymous SNV NM_025546:c.C77A:p.T26N exonic Rsl1d1 nonsynonymous SNV uc007yfb.1:c.C77A:p.T26N exonic ENSMUSG00000005846 nonsynonymous SNV ENSMUST00000067507:c.C116A:p.T39N 16qA1 NA NA chr16 11203272 GCGxTCG G T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 292 0 0 9.428311 0.06 0.02 2.318009 94 6 2591 164 60 60 0 0 GG 44.443711 148 0 3984 0 KEEP - Rsl1d1 NO AA_6 chr16 13405977 13405977 A T exonic Mkl2 synonymous SNV NM_153588:c.A2628T:p.T876T exonic Mkl2 synonymous SNV uc007yga.2:c.A2628T:p.T876T exonic ENSMUSG00000009569 synonymous SNV ENSMUST00000149359:c.A2628T:p.T876T 16qA1 NA NA chr16 13405977 CACxCAG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 67 0 0 24.1065 0.322581 0.02 -0.280571 21 10 568 278 60 60 0 0 AA 8.420887 28 0 759 0 KEEP + Mkl2 YES AA_6 chr16 32282477 32282477 A T intronic Rnf168 NA NA intronic Rnf168 NA NA intronic ENSMUSG00000014074 NA NA 16qB2 NA NA chr16 32282477 GTGxGTA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.99986 43 0 0 19.669049 0.4 0.02 -0.175373 12 8 342 217 60 60 0 0 AA 5.714193 19 0 524 0 KEEP + Rnf168 YES AA_6 chr16 58915689 58915689 A T exonic Olfr180 synonymous SNV NM_001011662:c.T777A:p.I259I exonic Olfr180 synonymous SNV uc007zoj.2:c.T777A:p.I259I exonic ENSMUSG00000090629 synonymous SNV ENSMUST00000171656:c.T777A:p.I259I 16qC1.2 NA NA chr16 58915689 TCTxATA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 103 2 0 27.570653 0.27907 0.02 -0.377038 31 12 852 329 60 60 0 0 AA 16.836686 56 0 1509 0 KEEP - Olfr180 YES AA_6 chr17 20687156 20687156 C T exonic Vmn2r109 synonymous SNV NM_001104571:c.G1533A:p.Q511Q exonic Vmn2r109 synonymous SNV uc009vbm.1:c.G1533A:p.Q511Q exonic ENSMUSG00000090572 synonymous SNV ENSMUST00000167093:c.G1533A:p.Q511Q 17qA3.2 NA NA chr17 20687156 AGCxTGA C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 105 0 0 44.203772 0.375 0.02 -0.420537 30 18 828 494 60 60 0 0 CC 15.943501 53 0 1511 0 KEEP - Vmn2r109 NO AA_6 chr17 24374143 24374143 T A exonic Ccnf nonsynonymous SNV NM_007634:c.A812T:p.Q271L exonic Ccnf nonsynonymous SNV uc008ave.1:c.A812T:p.Q271L exonic ENSMUSG00000072082 nonsynonymous SNV ENSMUST00000073425:c.A812T:p.Q271L 17qA3.3 NA NA chr17 24374143 AGTxGGC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 81 0 0 38.620594 0.441176 0.02 -0.306915 19 15 536 416 60 60 0 0 TT 11.72795 39 0 1057 0 KEEP - Ccnf YES AA_6 chr17 25170819 25170819 T C intronic Ift140 NA NA intronic Ift140 NA NA intronic ENSMUSG00000024169 NA NA 17qA3.3 NA NA chr17 25170819 TTTxTTT T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 72 2 0 11.557306 0.217391 0.02 -0.210461 18 5 507 144 60 60 0 1 TT 11.129045 37 0 1028 0 KEEP + Ift140 NO AA_6 chr17 30893659 30893659 T A exonic Dnah8 nonsynonymous SNV NM_013811:c.T8557A:p.C2853S exonic Dnahc8 nonsynonymous SNV uc008bua.1:c.T8557A:p.C2853S exonic ENSMUSG00000033826 nonsynonymous SNV ENSMUST00000035963:c.T8557A:p.C2853S 17qA3.3 NA NA chr17 30893659 GGCxGTG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 385 0 0 97.60741 0.242938 0.02 3.623236 134 43 3833 1197 60 60 0 0 TT 42.103659 140 0 3894 0 KEEP + Dnah8 YES AA_6 chr17 35160741 35160741 G C intronic Vwa7 NA NA intronic D17H6S56E-3 NA NA intronic ENSMUSG00000007030 NA NA 17qB1 NA NA chr17 35160741 GTGxTGA G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 287 0 0 42.112829 0.172131 0.02 2.320797 101 21 2807 564 60 60 0 0 GG 40.601742 135 0 3729 0 KEEP + Vwa7 NO AA_6 chr17 35972819 35972819 C G exonic Tubb5 nonsynonymous SNV NM_011655:c.G443C:p.G148A exonic Tubb5 nonsynonymous SNV uc008ciq.2:c.G443C:p.G148A exonic ENSMUSG00000001525 nonsynonymous SNV ENSMUST00000001566:c.G443C:p.G148A 17qB1 NA NA chr17 35972819 GTGxCCA C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 156 0 0 13.607928 0.106667 0.02 1.037738 67 8 1854 208 60 60 0 0 CC 20.449134 68 0 1856 0 KEEP - Tubb5 NO AA_6 chr17 37542792 37542792 T G exonic Olfr107 nonsynonymous SNV NM_146511:c.T298G:p.F100V exonic Olfr107 nonsynonymous SNV uc008cmw.2:c.T298G:p.F100V exonic ENSMUSG00000063188 nonsynonymous SNV ENSMUST00000077008:c.T298G:p.F100V 17qB1 NA NA chr17 37542792 TACxTCT T G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 241 1 0 21.663155 0.106557 0.02 2.222764 109 13 3087 334 60 60 0 0 TT 27.069998 90 0 2498 0 KEEP + Olfr107 NO AA_6 chr17 45603203 45603203 A T intronic Spats1 NA NA exonic Gm9104 nonsynonymous SNV uc012aub.1:c.A467T:p.Y156F exonic ENSMUSG00000071077 nonsynonymous SNV ENSMUST00000095268:c.A467T:p.Y156F 17qB3 NA NA chr17 45603203 CATxCGA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 522 7 78 157.335098 0.487603 0.02 2.329509 62 59 1663 1656 60 60 0 0 AA 91.054024 306 1 8096 8 KEEP + Spats1 YES AA_6 chr17 52597931 52597931 T A intergenic "Gm20098(dist=493349),Kcnh8(dist=144103)" NA NA intergenic "Satb1(dist=625316),Kcnh8(dist=144157)" NA NA intergenic "ENSMUSG00000078067(dist=53489),ENSMUSG00000035580(dist=267153)" NA NA 17qC NA NA chr17 52597931 CTCxGTG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993701 0.993703 0.999998 109 0 0 63.716909 0.384615 0.02 1.223502 40 25 1146 706 60 60 0 0 TT 10.22706 34 0 951 0 KEEP NA Gm20098 YES AA_6 chr17 5343101 5343101 A T UTR3 Arid1b NA NA UTR3 Arid1b NA NA UTR3 ENSMUSG00000069729 NA NA 17qA1 NA NA chr17 5343101 GGCxCAC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 144 2 0 94.551552 0.576271 0.02 1.177852 25 34 692 958 60 60 0 0 AA 18.931047 63 0 1687 0 KEEP + Arid1b YES AA_6 chr17 6456183 6456183 T A intergenic "Tmem181b-ps(dist=6041),Dynlt1f(dist=144613)" NA NA exonic Tmem181a nonsynonymous SNV uc008agu.2:c.A350T:p.N117I exonic ENSMUSG00000079733 nonsynonymous SNV ENSMUST00000115771:c.A467T:p.N156I 17qA1 "Score=0.991392;Name=No.65272,chr17:6219164" NA chr17 6456183 CGGxTGT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 240 0 55 15.000277 0.104651 0.02 0.941729 77 9 2090 231 36 36 0 0 TT 34.279548 114 0 3067 0 KEEP - Tmem181b-ps YES AA_6 chr17 72729528 72729528 T A intronic Alk NA NA intronic Alk NA NA intronic ENSMUSG00000055471 NA NA 17qE1.3 NA NA chr17 72729528 TATxGAT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.521029 0.522161 0.997832 43 0 0 17.202272 0.304348 0.02 -0.210466 16 7 449 200 60 60 0 0 TT 4.812118 16 0 438 0 KEEP - Alk YES AA_6 chr18 31987069 31987069 A T exonic Wdr33 nonsynonymous SNV NM_001170966:c.A131T:p.D44V exonic Wdr33 nonsynonymous SNV uc008ein.2:c.A131T:p.D44V exonic ENSMUSG00000024400 nonsynonymous SNV ENSMUST00000025264:c.A131T:p.D44V 18qB1 NA NA chr18 31987069 TTGxTGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 70 0 0 14.735862 0.205882 0.02 -0.30689 27 7 739 189 60 60 0 0 AA 8.419516 28 0 751 0 KEEP + Wdr33 YES AA_6 chr18 34473581 34473581 A T exonic Apc nonsynonymous SNV NM_007462:c.A3875T:p.Q1292L exonic Apc nonsynonymous SNV uc008eke.2:c.A3875T:p.Q1292L exonic ENSMUSG00000005871 nonsynonymous SNV ENSMUST00000079362:c.A3875T:p.Q1292L 18qB1 NA NA chr18 34473581 CACxGGA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 94 0 0 12.654504 0.146341 0.02 -0.359563 35 6 1003 172 60 60 0 0 AA 12.934395 43 0 1206 0 KEEP + Apc YES AA_6 chr18 34772932 34772932 T A exonic Brd8 synonymous SNV NM_030147:c.A378T:p.A126A exonic Brd8 synonymous SNV uc008ekv.1:c.A378T:p.A126A exonic ENSMUSG00000003778 synonymous SNV ENSMUST00000003876:c.A378T:p.A126A 18qB1 NA NA chr18 34772932 TTCxGCA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 70 0 0 41.73206 0.517241 0.02 -0.254319 14 15 393 433 60 60 0 0 TT 9.624631 32 0 881 0 KEEP - Brd8 YES AA_6 chr18 37114576 37114576 A T exonic "Pcdha4,Pcdha4-g" synonymous SNV NM_001174154:c.A2157T:p.T719T exonic "Pcdha4,Pcdha4-g" synonymous SNV uc008eox.2:c.A2157T:p.T719T exonic ENSMUSG00000007440 synonymous SNV ENSMUST00000115661:c.A2157T:p.T719T 18qB2 NA NA chr18 37114576 CACxGCG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 128 0 0 28.429991 0.272727 0.02 -0.385871 32 12 919 339 60 60 0 0 AA 21.054648 70 0 1941 0 KEEP + Pcdha4 YES AA_6 chr18 50011158 50011158 T C intronic Dmxl1 NA NA intronic Dmxl1 NA NA intronic ENSMUSG00000037416 NA NA 18qD1 NA NA chr18 50011158 ATTxTGA T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 91 2 0 21.793281 0.310345 0.02 -0.2543 20 9 564 253 60 60 0 0 TT 14.136782 47 0 1304 0 KEEP + Dmxl1 NO AA_6 chr18 52823319 52823319 C G exonic 1700034E13Rik nonsynonymous SNV NM_030097:c.C274G:p.P92A exonic 1700034E13Rik nonsynonymous SNV uc008exk.1:c.C274G:p.P92A exonic ENSMUSG00000024532 nonsynonymous SNV ENSMUST00000091904:c.C274G:p.P92A 18qD1 NA NA chr18 52823319 CTGxCAG C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 108 2 0 10.008952 0.128205 0.02 -0.341387 34 5 900 141 60 60 0 0 CC 16.84342 56 0 1547 0 KEEP + 1700034E13Rik NO AA_6 chr18 64621327 64621327 G A exonic Fech nonsynonymous SNV NM_007998:c.C922T:p.P308S exonic Fech nonsynonymous SNV uc008fei.1:c.C700T:p.P234S exonic ENSMUSG00000024588 nonsynonymous SNV ENSMUST00000091055:c.C853T:p.P285S 18qE1 NA NA chr18 64621327 AGGxTAC G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 73 0 0 7.522767 0.121212 0.02 -0.289111 29 4 760 109 60 60 0 0 GG 9.911301 33 0 868 0 KEEP - Fech NO AA_6 chr18 65450877 65450877 C T intronic Alpk2 NA NA intronic Alpk2 NA NA intronic ENSMUSG00000032845 NA NA 18qE1 NA NA chr18 65450877 CCAxCCA C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 180 0 0 41.48595 0.228916 0.02 0.96781 64 19 1712 518 60 60 0 0 CC 22.252487 74 0 2001 0 KEEP - Alpk2 NO AA_6 chr18 71534274 71534274 A T intronic Dcc NA NA intronic Dcc NA NA intronic ENSMUSG00000060534 NA NA 18qE2 NA NA chr18 71534274 CGTxCCG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 64 0 0 24.106531 0.322581 0.02 -0.271808 21 10 565 278 60 60 0 0 AA 8.412164 28 0 727 0 KEEP - Dcc YES AA_6 chr18 77669922 77669922 A T exonic Loxhd1 nonsynonymous SNV NM_172834:c.A5684T:p.H1895L exonic Loxhd1 nonsynonymous SNV uc012bfd.1:c.A5684T:p.H1895L exonic ENSMUSG00000032818 nonsynonymous SNV ENSMUST00000123166:c.A1028T:p.H343L 18qE3 NA NA chr18 77669922 GGCxCGT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 67 0 0 33.938996 0.448276 0.02 -0.254279 16 13 431 364 60 60 0 0 AA 10.217019 34 0 897 0 KEEP + Loxhd1 YES AA_6 chr19 10269108 10269108 A C intronic Fads1 NA NA intronic Fads1 NA NA intronic ENSMUSG00000010663 NA NA 19qA NA NA chr19 10269108 GTGxGTA A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94839 0.948402 0.999988 79 0 0 14.435588 0.166667 0.02 -0.420863 40 8 1130 200 60 60 0 0 AA 8.120648 27 0 744 0 KEEP + Fads1 NO AA_6 chr19 25697683 25697683 G A exonic Dmrt3 synonymous SNV NM_177360:c.G1401A:p.S467S exonic Dmrt3 synonymous SNV uc008hbk.2:c.G1401A:p.S467S exonic ENSMUSG00000042372 synonymous SNV ENSMUST00000048935:c.G1401A:p.S467S 19qC1 NA NA chr19 25697683 CTCxGAT G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 123 0 0 108.955741 0.59375 0.02 1.232376 26 38 679 1096 60 60 0 0 GG 14.430348 48 0 1284 0 KEEP + Dmrt3 NO AA_6 chr19 27888180 27888180 T C exonic Rfx3 nonsynonymous SNV NM_011265:c.A974G:p.D325G exonic Rfx3 nonsynonymous SNV uc008hce.2:c.A899G:p.D300G exonic ENSMUSG00000040929 nonsynonymous SNV ENSMUST00000099533:c.A500G:p.D167G 19qC1 NA NA chr19 27888180 GCAxCTG T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552864 0.552887 0.999957 54 0 0 14.365341 0.272727 0.02 -0.192919 16 6 444 171 60 60 0 0 TT 7.82019 26 0 719 0 KEEP - Rfx3 NO AA_6 chr19 38820300 38820300 G T exonic Plce1 synonymous SNV NM_019588:c.G4653T:p.G1551G exonic Plce1 synonymous SNV uc008hjq.1:c.G1203T:p.G401G exonic ENSMUSG00000024998 synonymous SNV ENSMUST00000025962:c.G4653T:p.G1551G 19qC3 NA NA chr19 38820300 TGGxAAT G T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552864 0.552887 0.999957 62 0 0 11.156787 0.2 0.02 -0.219067 20 5 544 142 60 60 0 0 GG 7.81592 26 0 715 0 KEEP + Plce1 NO AA_6 chr19 38820301 38820301 A T exonic Plce1 nonsynonymous SNV NM_019588:c.A4654T:p.N1552Y exonic Plce1 nonsynonymous SNV uc008hjq.1:c.A1204T:p.N402Y exonic ENSMUSG00000024998 nonsynonymous SNV ENSMUST00000025962:c.A4654T:p.N1552Y 19qC3 NA NA chr19 38820301 GGGxATG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 62 0 0 18.447851 0.307692 0.02 -0.227965 18 8 492 216 60 60 0 0 AA 8.041463 27 0 698 0 KEEP + Plce1 YES AA_6 chr19 41191683 41191683 G A intronic Tll2 NA NA intronic Tll2 NA NA intronic ENSMUSG00000025013 NA NA 19qC3 NA NA chr19 41191683 GCAxCAT G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 50 0 0 27.766263 0.588235 0.02 -0.149076 7 10 196 280 60 60 0 0 GG 8.421586 28 0 786 0 KEEP - Tll2 NO AA_6 chr19 42264988 42264988 C G UTR3 Zfyve27 NA NA UTR3 Zfyve27 NA NA UTR3 ENSMUSG00000018820 NA NA 19qC3 NA NA chr19 42264988 TGTxCCA C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 97 0 0 16.849364 0.228571 0.02 -0.306881 27 8 761 212 60 60 0 0 CC 15.039006 50 0 1393 0 KEEP + Zfyve27 NO AA_6 chr19 50752642 50752642 C T exonic Sorcs1 nonsynonymous SNV NM_001252501:c.G317A:p.G106D exonic Sorcs1 nonsynonymous SNV uc008hwa.2:c.G317A:p.G106D exonic ENSMUSG00000043531 nonsynonymous SNV ENSMUST00000076049:c.G317A:p.G106D 19qD1 NA NA chr19 50752642 CGGxCAG C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 DBSNP COVERED 0.582275 0.58293 0.998875 61 0 0 28.198995 0.44 0.02 -0.227984 14 11 388 304 60 60 0 0 CC 8.420862 28 0 772 0 KEEP - Sorcs1 NO AA_6 chr19 56797968 56797968 C T exonic Adrb1 synonymous SNV NM_007419:c.C1107T:p.S369S exonic Adrb1 synonymous SNV uc008hze.2:c.C1107T:p.S369S exonic ENSMUSG00000035283 synonymous SNV ENSMUST00000038949:c.C1107T:p.S369S 19qD2 NA NA chr19 56797968 CAGxCCC C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 73 0 0 10.755227 0.2 0.02 -0.219222 20 5 565 138 60 60 0 0 CC 11.731108 39 0 1092 0 KEEP + Adrb1 NO AA_6 chr19 6230406 6230406 T A exonic Ppp2r5b stopgain SNV NM_198168:c.A976T:p.K326X exonic Ppp2r5b stopgain SNV uc008ght.1:c.A976T:p.K326X exonic ENSMUSG00000024777 stopgain SNV ENSMUST00000025695:c.A976T:p.K326X 19qA NA NA chr19 6230406 TTTxAGG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 72 1 0 27.873065 0.333333 0.02 -0.315654 24 12 661 321 60 60 0 0 TT 9.322411 31 0 837 0 KEEP - Ppp2r5b YES AA_6 chr19 6924930 6924930 C G intronic Ccdc88b NA NA intronic Ccdc88b NA NA intronic ENSMUSG00000047810 NA NA 19qA NA NA chr19 6924930 GTGxCCA C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 241 0 0 7.822138 0.053191 0.02 0.755894 89 5 2453 139 60 60 0 0 CC 34.287795 114 0 3172 0 KEEP - Ccdc88b NO AA_6 chr19 8787867 8787867 T A exonic Slc3a2 nonsynonymous SNV NM_008577:c.A371T:p.Q124L exonic Slc3a2 nonsynonymous SNV uc012bib.1:c.A371T:p.Q124L exonic ENSMUSG00000010095 nonsynonymous SNV ENSMUST00000010239:c.A371T:p.Q124L 19qA NA NA chr19 8787867 GCCxGAA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999998 71 0 0 8.096313 0.133333 0.02 -0.263084 26 4 735 113 60 60 0 0 TT 10.22509 34 0 927 0 KEEP - Slc3a2 YES AA_6 chr1 10474114 10474114 C T exonic Cpa6 synonymous SNV NM_177834:c.G348A:p.V116V exonic Cpa6 synonymous SNV uc007ahq.1:c.G348A:p.V116V exonic ENSMUSG00000042501 nonsynonymous SNV ENSMUST00000153695:c.G223A:p.G75R 1qA2 NA NA chr1 10474114 TTCxACA C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 103 0 0 11.957598 0.136364 0.02 -0.385862 38 6 1088 167 60 60 0 0 CC 12.622623 42 0 1189 0 KEEP - Cpa6 NO AA_6 chr1 129857412 129857412 T A exonic Zranb3 nonsynonymous SNV NM_027678:c.A2512T:p.M838L exonic Zranb3 nonsynonymous SNV uc007cld.1:c.A2512T:p.M838L exonic ENSMUSG00000036086 nonsynonymous SNV ENSMUST00000086614:c.A2512T:p.M838L 1qE4 NA NA chr1 129857412 TCAxGGA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 120 0 0 63.471207 0.534884 0.02 -0.377064 20 23 545 654 60 60 0 0 TT 17.742295 59 0 1592 0 KEEP - Zranb3 YES AA_6 chr1 132612405 132612405 T A intronic Pfkfb2 NA NA intronic Pfkfb2 NA NA intronic ENSMUSG00000026409 NA NA 1qE4 NA NA chr1 132612405 GGTxGGG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 110 0 0 72.084882 0.634146 0.02 -0.359366 15 26 415 714 60 60 0 0 TT 15.93342 53 0 1399 0 KEEP - Pfkfb2 YES AA_6 chr1 133655087 133655087 T A exonic Slc26a9 nonsynonymous SNV NM_177243:c.T1141A:p.F381I exonic Slc26a9 nonsynonymous SNV uc007cns.1:c.T1141A:p.F381I exonic ENSMUSG00000042268 nonsynonymous SNV ENSMUST00000049027:c.T1141A:p.F381I 1qE4 NA NA chr1 133655087 TCCxTTT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 166 0 0 43.093571 0.271429 0.02 1.037567 51 19 1438 518 60 60 0 0 TT 23.16127 77 0 2154 0 KEEP + Slc26a9 YES AA_6 chr1 141407561 141407561 T A exonic F13b nonsynonymous SNV NM_031164:c.T1125A:p.S375R exonic F13b nonsynonymous SNV uc007cwk.2:c.T1125A:p.S375R exonic ENSMUSG00000026368 nonsynonymous SNV ENSMUST00000027615:c.T1125A:p.S375R 1qF NA NA chr1 141407561 AAGxACG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139813 0.139832 0.999863 41 0 0 19.498451 0.583333 0.02 -0.105227 5 7 137 197 60 60 0 0 TT 6.014597 20 0 538 0 KEEP + F13b YES AA_6 chr1 146093424 146093424 A T exonic Rgs1 nonsynonymous SNV NM_015811:c.T340A:p.F114I exonic Rgs1 nonsynonymous SNV uc007cxk.1:c.T199A:p.F67I exonic ENSMUSG00000026358 nonsynonymous SNV ENSMUST00000027604:c.T301A:p.F101I 1qF NA NA chr1 146093424 AGAxTTC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 81 0 0 35.020945 0.378378 0.02 -0.324441 23 14 631 390 60 60 0 0 AA 10.826718 36 0 977 0 KEEP - Rgs1 YES AA_6 chr1 162125395 162125395 A T UTR5 Mrps14 NA NA UTR5 Mrps14 NA NA UTR5 ENSMUSG00000058267 NA NA 1qH2.1 NA NA chr1 162125395 GACxACA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 93 0 0 21.523122 0.294118 0.02 -0.298005 24 10 669 257 60 60 0 0 AA 12.932038 43 0 1176 0 KEEP + Mrps14 YES AA_6 chr1 173300696 173300696 A T UTR5 Pvrl4 NA NA UTR5 Pvrl4 NA NA UTR5 ENSMUSG00000006411 NA NA 1qH3 NA NA chr1 173300696 CTGxCTT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.259018 0.260965 0.99254 27 0 0 14.708588 0.428571 0.02 -0.122733 8 6 217 160 60 60 0 0 AA 2.706735 9 0 246 0 KEEP + Pvrl4 YES AA_6 chr1 175981358 175981358 A T exonic Olfr432 nonsynonymous SNV NM_146716:c.A853T:p.N285Y exonic Olfr432 nonsynonymous SNV uc007dso.1:c.A853T:p.N285Y exonic ENSMUSG00000047048 nonsynonymous SNV ENSMUST00000062665:c.A853T:p.N285Y 1qH3 NA NA chr1 175981358 TTCxACC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 110 0 0 30.809366 0.282609 0.02 -0.403392 33 13 933 365 60 60 0 0 AA 15.332715 51 0 1366 0 KEEP + Olfr432 YES AA_6 chr1 180034226 180034226 C T intergenic "Gm16432(dist=55804),Desi2(dist=83322)" NA NA ncRNA_exonic EG545391 NA NA exonic ENSMUSG00000066667 nonsynonymous SNV ENSMUST00000111149:c.C1048T:p.L350F 1qH4 "Score=0.946144;Name=No.519,chr1:179767643" NA chr1 180034226 GTCxTTA C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52183 0.522161 0.999366 50 3 0 10.953794 0.208333 0.02 -0.210463 19 5 537 139 60 37 0 0 CC 5.109775 17 0 477 0 KEEP + Gm16432 NO AA_6 chr1 182741919 182741919 T A intronic H3f3a NA NA intronic "H3f3a,H3f3b" NA NA intronic ENSMUSG00000060743 NA NA 1qH4 NA NA chr1 182741919 CGTxTTA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552881 0.552887 0.999988 58 0 0 43.731334 0.64 0.02 -0.219208 9 16 253 432 60 60 0 0 TT 8.121015 27 0 747 0 KEEP - H3f3a YES AA_6 chr1 186732189 186732189 T A intronic Mark1 NA NA intronic Mark1 NA NA intronic ENSMUSG00000026620 NA NA 1qH5 NA NA chr1 186732189 TGCxGGG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 184 2 0 89.941073 0.532258 0.02 1.151748 29 33 797 928 60 60 0 0 TT 29.470548 98 0 2718 0 KEEP - Mark1 YES AA_6 chr1 187279557 187279557 A G exonic Slc30a10 synonymous SNV NM_001033286:c.A615G:p.A205A exonic Slc30a10 synonymous SNV uc007dzk.1:c.A615G:p.A205A exonic ENSMUSG00000026614 synonymous SNV ENSMUST00000061093:c.A615G:p.A205A 1qH5 NA NA chr1 187279557 AGCxGGT A G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.454419 0.457757 0.992708 37 0 0 13.865016 0.272727 0.02 -0.192927 16 6 455 166 60 60 0 0 AA 3.00565 10 0 263 0 KEEP + Slc30a10 NO AA_6 chr1 37421085 37421085 T C intronic Inpp4a NA NA intronic Inpp4a NA NA intronic ENSMUSG00000026113 NA NA 1qB NA NA chr1 37421085 TGCxGGT T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999999 97 0 0 6.945488 0.113636 0.02 -0.385762 39 5 1102 113 60 60 0 0 TT 10.519539 35 0 947 0 KEEP + Inpp4a NO AA_6 chr1 46874874 46874874 T A intronic Slc39a10 NA NA exonic Slc39a10 nonsynonymous SNV uc007axd.1:c.A2186T:p.Q729L exonic ENSMUSG00000025986 unknown UNKNOWN 1qC1.1 NA NA chr1 46874874 ATTxGAT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 66 0 0 45.288437 0.695652 0.02 -0.201679 7 16 196 438 60 60 0 0 TT 9.926133 33 0 920 0 KEEP - Slc39a10 YES AA_6 chr1 58181929 58181929 T A intronic Aox3 NA NA intronic Aox3 NA NA intronic ENSMUSG00000064294 NA NA 1qC1.3 NA NA chr1 58181929 GAGxATG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457737 0.457757 0.999957 55 0 0 23.530278 0.409091 0.02 -0.192903 13 9 349 257 60 60 0 0 TT 7.815963 26 0 674 0 KEEP + Aox3 YES AA_6 chr1 68245517 68245517 T A exonic Erbb4 nonsynonymous SNV NM_010154:c.A2386T:p.T796S exonic Erbb4 nonsynonymous SNV uc007bjb.1:c.A2386T:p.T796S exonic ENSMUSG00000062209 nonsynonymous SNV ENSMUST00000097703:c.A2356T:p.T786S 1qC3 NA NA chr1 68245517 GCGxAAC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490538 0.490544 0.999988 55 0 0 41.463019 0.652174 0.02 -0.201364 8 15 216 408 60 60 0 0 TT 8.118629 27 0 718 0 KEEP - Erbb4 YES AA_6 chr1 74993266 74993266 G C exonic Ihh synonymous SNV NM_010544:c.C747G:p.R249R exonic Ihh synonymous SNV uc007bnl.1:c.C747G:p.R249R exonic ENSMUSG00000006538 synonymous SNV ENSMUST00000006713:c.C633G:p.R211R 1qC3 NA NA chr1 74993266 TAGxCGC G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 130 2 0 8.645249 0.119048 0.02 -0.368247 37 5 1034 129 60 60 0 0 GG 21.348549 71 0 1927 0 KEEP - Ihh NO AA_6 chr1 87409127 87409127 A C intergenic "NONE(dist=NONE),Sp110(dist=64348)" NA NA intergenic "NONE(dist=NONE),Csprs(dist=23717)" NA NA ncRNA_exonic ENSMUSG00000089714 NA NA 1qC5 "Score=0.98284;Name=No.317,chr1:85175551" NA chr1 87409127 GGAxCAG A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 122 1 60 13.130672 0.26087 0.02 -0.201631 17 6 462 160 36 29 0 0 AA 22.845708 76 0 2027 0 KEEP NA NONE NO AA_6 chr1 95318566 95318566 A T intronic Hdlbp NA NA intronic Hdlbp NA NA exonic ENSMUSG00000090489 nonsynonymous SNV ENSMUST00000096427:c.A302T:p.K101M 1qD NA NA chr1 95318566 ACAxGTA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 193 3 6 22.062367 0.238095 0.02 -0.3683 32 10 902 273 60 60 0 0 AA 37.592177 125 0 3484 0 KEEP - Hdlbp YES AA_6 chr1 95903335 95903335 T A intronic Gm6086 NA NA intronic Gm6086 NA NA intronic ENSMUSG00000073608 NA NA 1qD NA NA chr1 95903335 GCTxGGG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 175 0 15 91.648384 0.507463 0.02 1.107693 33 34 924 956 60 60 0 0 TT 23.157815 77 0 2098 0 KEEP + Gm6086 YES AA_6 chr2 10027314 10027314 A C exonic Itih2 nonsynonymous SNV NM_010582:c.T1592G:p.I531S exonic Itih2 nonsynonymous SNV uc008ihq.2:c.T1592G:p.I531S exonic ENSMUSG00000037254 nonsynonymous SNV ENSMUST00000042290:c.T1592G:p.I531S 2qA1 NA NA chr2 10027314 ACGxTCT A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 112 0 0 14.573167 0.159091 0.02 -0.385781 37 7 1007 196 60 60 0 0 AA 15.036757 50 0 1355 0 KEEP - Itih2 NO AA_6 chr2 122122581 122122581 A T exonic Duox2 nonsynonymous SNV NM_177610:c.T350A:p.V117E exonic Duox2 nonsynonymous SNV uc008mak.1:c.T350A:p.V117E exonic ENSMUSG00000068452 nonsynonymous SNV ENSMUST00000053734:c.T350A:p.V117E 2qE5 "Score=0.941126;Name=No.75333,chr2:122145169" NA chr2 122122581 CTCxCCA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139743 0.139832 0.999366 34 1 0 7.301645 0.25 0.02 -0.105221 9 3 242 88 60 60 0 0 AA 5.106069 17 0 438 0 KEEP - Duox2 YES AA_6 chr2 127062382 127062382 A T exonic Snrnp200 nonsynonymous SNV NM_177214:c.A5321T:p.Q1774L exonic Snrnp200 nonsynonymous SNV uc008mfa.1:c.A362T:p.Q121L exonic ENSMUSG00000003660 nonsynonymous SNV ENSMUST00000103220:c.A5321T:p.Q1774L 2qF1 NA NA chr2 127062382 TGCxGGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 99 0 0 40.727524 0.380952 0.02 -0.367769 26 16 719 452 60 60 0 0 AA 14.437515 48 0 1332 0 KEEP + Snrnp200 YES AA_6 chr2 128478926 128478926 T A exonic Anapc1 nonsynonymous SNV NM_008569:c.A2681T:p.Q894L exonic Anapc1 nonsynonymous SNV uc008mgq.2:c.A2681T:p.Q894L exonic ENSMUSG00000014355 nonsynonymous SNV ENSMUST00000014499:c.A2681T:p.Q894L 2qF1 NA NA chr2 128478926 TACxGGC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229163 0.229173 0.999957 49 2 0 18.938088 0.466667 0.02 -0.13154 8 7 224 201 60 60 0 0 TT 7.820124 26 0 721 0 KEEP - Anapc1 YES AA_6 chr2 131038872 131038872 G A UTR3 Ap5s1 NA NA UTR3 2310035K24Rik NA NA UTR3 ENSMUSG00000068264 NA NA 2qF1 NA NA chr2 131038872 CGCxAGT G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 158 0 0 113.000798 0.545455 0.02 1.020363 35 42 856 1160 60 60 0 0 GG 19.780178 66 0 1622 0 KEEP + Ap5s1 NO AA_6 chr2 13201760 13201760 T A exonic Cubn nonsynonymous SNV NM_001081084:c.A10471T:p.S3491C exonic Cubn nonsynonymous SNV uc008ijz.1:c.A10471T:p.S3491C exonic ENSMUSG00000026726 nonsynonymous SNV ENSMUST00000028056:c.A1432T:p.S478C 2qA1 NA NA chr2 13201760 CGCxGTG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09898 0.099721 0.99257 21 1 0 13.774395 0.5 0.02 -0.087699 5 5 143 144 60 60 0 0 TT 2.406342 8 0 223 0 KEEP - Cubn YES AA_6 chr2 132758788 132758788 T C intronic Fermt1 NA NA intronic Fermt1 NA NA intronic ENSMUSG00000027356 NA NA 2qF2 NA NA chr2 132758788 TTCxTAC T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 90 2 0 10.104353 0.128205 0.02 -0.342009 34 5 969 142 60 60 0 0 TT 12.633912 42 0 1184 0 KEEP - Fermt1 NO AA_6 chr2 154378701 154378701 G A exonic Actl10 nonsynonymous SNV NM_001171640:c.G836A:p.R279H exonic 1700007I08Rik nonsynonymous SNV uc012cgx.1:c.G836A:p.R279H exonic ENSMUSG00000078129 nonsynonymous SNV ENSMUST00000104928:c.G836A:p.R279H 2qH1 NA NA chr2 154378701 AGCxCAT G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 107 0 0 18.012088 0.157895 0.02 1.196128 48 9 1175 245 60 60 0 0 GG 10.818938 36 0 917 0 KEEP + Actl10 NO AA_6 chr2 156879452 156879452 G C intronic 9830001H06Rik NA NA intronic 9830001H06Rik NA NA intronic ENSMUSG00000055485 NA NA 2qH1 NA NA chr2 156879452 CAAxCAG G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 54 0 0 8.714748 0.166667 0.02 -0.210462 20 4 559 115 60 60 0 0 GG 6.91345 23 0 625 0 KEEP - 9830001H06Rik NO AA_6 chr2 173513654 173513654 T G exonic Rab22a synonymous SNV NM_024436:c.T123G:p.S41S exonic Rab22a synonymous SNV uc008oed.1:c.T123G:p.S41S exonic ENSMUSG00000027519 synonymous SNV ENSMUST00000029024:c.T123G:p.S41S 2qH4 NA NA chr2 173513654 ATCxTTT T G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 76 0 0 20.434604 0.37037 0.02 -0.236667 17 10 481 234 60 60 0 0 TT 10.227346 34 0 957 0 KEEP + Rab22a NO AA_6 chr2 179835739 179835739 C T exonic Hrh3 nonsynonymous SNV NM_133849:c.G800A:p.G267E exonic Hrh3 nonsynonymous SNV uc008oij.1:c.G800A:p.G267E exonic ENSMUSG00000039059 nonsynonymous SNV ENSMUST00000056480:c.G800A:p.G267E 2qH4 NA NA chr2 179835739 TCCxCGT C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 136 0 0 30.47304 0.208955 0.02 1.197358 53 14 1460 387 60 60 0 0 CC 18.300805 61 0 1648 0 KEEP - Hrh3 NO AA_6 chr2 181342797 181342797 A C intronic Prpf6 NA NA intronic Prpf6 NA NA intronic ENSMUSG00000002455 NA NA 2qH4 NA NA chr2 181342797 TTAxATA A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.99986 53 0 0 13.044391 0.206897 0.02 -0.254313 23 6 653 166 60 60 0 0 AA 5.695147 19 0 516 0 KEEP + Prpf6 NO AA_6 chr2 26805527 26805527 T A intronic Gm711 NA NA intronic Gm711 NA NA intronic ENSMUSG00000049897 NA NA 2qA3 NA NA chr2 26805527 TTCxTTC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58286 0.58293 0.999879 56 0 0 31.829839 0.461538 0.02 -0.228007 14 12 398 339 60 60 0 0 TT 6.618031 22 0 625 0 KEEP + Gm711 YES AA_6 chr2 34887806 34887806 A T exonic Hc synonymous SNV NM_010406:c.T1527A:p.I509I exonic Hc synonymous SNV uc008jjn.2:c.T1527A:p.I509I exonic ENSMUSG00000026874 synonymous SNV ENSMUST00000028233:c.T1527A:p.I509I 2qB NA NA chr2 34887806 TACxATT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.455625 0.457757 0.995343 39 0 0 8.380807 0.181818 0.02 -0.192922 18 4 506 110 60 60 0 0 AA 4.18468 14 0 367 0 KEEP - Hc YES AA_6 chr2 41137768 41137768 A T exonic Lrp1b synonymous SNV NM_053011:c.T4728A:p.L1576L exonic Lrp1b synonymous SNV uc008jon.1:c.T4728A:p.L1576L exonic ENSMUSG00000049252 synonymous SNV ENSMUST00000052550:c.T4821A:p.L1607L 2qB NA NA chr2 41137768 AAGxAGA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 63 0 0 31.072627 0.464286 0.02 -0.24519 15 13 422 333 60 60 0 0 AA 9.624882 32 0 885 0 KEEP - Lrp1b YES AA_6 chr2 64791636 64791636 A T exonic Grb14 nonsynonymous SNV NM_016719:c.T458A:p.L153Q exonic Grb14 nonsynonymous SNV uc008jvy.1:c.T203A:p.L68Q exonic ENSMUSG00000026888 nonsynonymous SNV ENSMUST00000156765:c.T203A:p.L68Q 2qC1.3 NA NA chr2 64791636 GATxGGT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612333 0.612407 0.999879 56 0 0 22.430673 0.333333 0.02 -0.236768 18 9 501 256 60 60 0 0 AA 6.616332 22 0 598 0 KEEP - Grb14 YES AA_6 chr2 74552461 74552461 A T ncRNA_intronic 1700109F18Rik NA NA intronic Hoxd3 NA NA ncRNA_intronic ENSMUSG00000052371 NA NA 2qC3 NA NA chr2 74552461 TCTxGGA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.259062 0.260965 0.992708 29 0 0 11.76984 0.3125 0.02 -0.140308 11 5 313 137 60 60 0 0 AA 3.007689 10 0 276 0 KEEP - 1700109F18Rik YES AA_6 chr2 75029449 75029449 A T intergenic "Mtx2(dist=314644),9430019J16Rik(dist=244665)" NA NA intergenic "Mtx2(dist=314644),AK146150(dist=266820)" NA NA ncRNA_exonic ENSMUSG00000081406 NA NA 2qC3 NA NA chr2 75029449 AAAxGCT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 148 4 55 7.996615 0.133333 0.02 -0.263076 26 4 733 112 60 43 0 0 AA 24.621486 82 0 2258 0 KEEP NA Mtx2 YES AA_6 chr2 76729021 76729021 A T exonic Ttn nonsynonymous SNV NM_011652:c.T17596A:p.C5866S exonic Ttn nonsynonymous SNV uc008kfn.1:c.T17596A:p.C5866S exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000134720:c.T7609A:p.C2537S 2qC3 NA NA chr2 76729021 CACxTGT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 98 0 0 48.432341 0.45 0.02 -0.350772 22 18 608 518 60 60 0 0 AA 12.930291 43 0 1146 0 KEEP - Ttn YES AA_6 chr2 88895558 88895558 A T exonic Olfr1218 synonymous SNV NM_146818:c.T24A:p.T8T exonic Olfr1218 synonymous SNV uc008kqv.1:c.T24A:p.T8T exonic ENSMUSG00000075105 synonymous SNV ENSMUST00000099798:c.T24A:p.T8T 2qE1 NA NA chr2 88895558 CTCxGTA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 60 2 0 16.663609 0.269231 0.02 -0.22801 19 7 541 199 60 60 0 0 AA 8.723039 29 0 817 0 KEEP - Olfr1218 YES AA_6 chr3 104588321 104588321 A G exonic Ppm1j synonymous SNV NM_027982:c.A1227G:p.R409R exonic Ppm1j synonymous SNV uc008quk.1:c.A1227G:p.R409R exonic ENSMUSG00000002228 synonymous SNV ENSMUST00000002298:c.A1227G:p.R409R 3qF2.2 NA NA chr3 104588321 ACGxGTG A G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 133 0 0 43.067302 0.354167 0.02 -0.420695 31 17 869 485 60 60 0 0 AA 19.533036 65 0 1765 0 KEEP + Ppm1j NO AA_6 chr3 122226231 122226231 C T exonic Bcar3 synonymous SNV NM_013867:c.C1932T:p.A644A exonic Bcar3 synonymous SNV uc008req.2:c.C1932T:p.A644A exonic ENSMUSG00000028121 synonymous SNV ENSMUST00000029766:c.C1932T:p.A644A 3qG1 NA NA chr3 122226231 TGCxATC C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 107 0 0 50.477252 0.542857 0.02 -0.306913 16 19 460 519 60 60 0 0 CC 18.349969 61 0 1742 0 KEEP + Bcar3 NO AA_6 chr3 144417725 144417725 A T exonic Clca1 nonsynonymous SNV NM_009899:c.T931A:p.L311M exonic Clca1 nonsynonymous SNV uc008rpx.1:c.T931A:p.L311M exonic ENSMUSG00000056025 nonsynonymous SNV ENSMUST00000029932:c.T931A:p.L311M 3qH2 "Score=0.949184;Name=No.81918,chr3:144448265" NA chr3 144417725 CCAxGCA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 145 0 0 72.686455 0.5625 0.02 -0.420905 21 27 590 741 60 60 0 0 AA 22.858126 76 0 2103 0 KEEP - Clca1 YES AA_6 chr3 148486656 148486656 T G intronic Lphn2 NA NA intronic Lphn2 NA NA intronic ENSMUSG00000028184 NA NA 3qH3 NA NA chr3 148486656 CGGxTAC T G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 67 1 0 11.066858 0.227273 0.02 -0.192892 17 5 457 138 60 60 0 0 TT 11.722442 39 0 1038 0 KEEP - Lphn2 NO AA_6 chr3 153573902 153573902 C T UTR5 Rabggtb NA NA UTR5 Rabggtb NA NA intronic ENSMUSG00000038975 NA NA 3qH3 NA NA chr3 153573902 CCTxTAC C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 220 2 0 19.918773 0.2 0.02 1.230462 36 9 1023 254 60 60 0 0 CC 39.400409 131 0 3742 0 KEEP - Rabggtb NO AA_6 chr3 19571066 19571066 G T exonic Trim55 nonsynonymous SNV NM_001081281:c.G746T:p.R249M exonic Trim55 nonsynonymous SNV uc008orw.1:c.G746T:p.R249M exonic ENSMUSG00000060913 nonsynonymous SNV ENSMUST00000029139:c.G746T:p.R249M 3qA2 NA NA chr3 19571066 TCAxGAA G T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 82 0 0 18.330689 0.258065 0.02 -0.27185 23 8 654 222 60 60 0 0 GG 12.934317 43 0 1214 0 KEEP + Trim55 NO AA_6 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 57 3 0 18.847604 0.307692 0.02 -0.23676 18 8 503 220 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO AA_6 chr3 5403358 5403358 C T exonic Zfhx4 nonsynonymous SNV NM_030708:c.C8575T:p.P2859S exonic Zfhx4 nonsynonymous SNV uc008ooa.1:c.C8575T:p.P2859S exonic ENSMUSG00000025255 nonsynonymous SNV ENSMUST00000026284:c.C8575T:p.P2859S 3qA1 NA NA chr3 5403358 GACxCTG C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999999 65 0 0 7.032221 0.166667 0.02 -0.210273 20 4 566 98 60 60 0 0 CC 10.527952 35 0 981 0 KEEP + Zfhx4 NO AA_6 chr3 64519681 64519681 A T splicing Vmn2r7(NM_175674:exon3:c.1137+2T>A) NA NA exonic;splicing Vmn2r7;Vmn2r7(uc009vco.1:exon3:c.1137+2T>A) nonsynonymous SNV uc008pkh.2:c.T1406A:p.V469E splicing "ENSMUSG00000062200(ENSMUST00000168072:exon3:c.1137+2T>A,ENSMUST00000161972:exon4:c.1404+2T>A)" NA NA 3qE1 "Score=0.981182;Name=No.81601,chr3:64267157" NA chr3 64519681 CATxCCT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 240 0 0 61.478977 0.27957 0.02 0.87984 67 26 1786 730 60 60 0 0 AA 38.487347 128 0 3403 0 KEEP - Vmn2r7 YES AA_6 chr3 65106062 65106062 A T intronic Kcnab1 NA NA ncRNA_intronic AK039238 NA NA intronic ENSMUSG00000027827 NA NA 3qE1 NA NA chr3 65106062 TTGxTGT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 109 2 0 34.379517 0.5 0.02 -0.227846 13 13 338 360 60 60 0 0 AA 19.249057 64 0 1758 0 KEEP + Kcnab1 YES AA_6 chr3 87800445 87800445 T A intronic Bcan NA NA intronic Bcan NA NA intronic ENSMUSG00000004892 NA NA 3qF1 NA NA chr3 87800445 GTCxACA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077326 0.077336 0.999879 40 0 0 7.043229 0.333333 0.02 -0.07892 6 3 170 81 60 60 0 0 TT 6.609815 22 0 596 0 KEEP - Bcan YES AA_6 chr3 93202514 93202514 C A exonic Rptn nonsynonymous SNV NM_009100:c.C3231A:p.F1077L exonic Rptn nonsynonymous SNV uc008qfh.1:c.C3231A:p.F1077L exonic ENSMUSG00000041984 nonsynonymous SNV ENSMUST00000045912:c.C3231A:p.F1077L 3qF2.1 NA NA chr3 93202514 TTTxCAT C A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 170 0 0 46.970926 0.529412 0.02 -0.298145 16 18 463 486 60 60 0 0 CC 34.233371 114 0 3185 0 KEEP + Rptn NO AA_6 chr3 94148321 94148321 C T intronic Them5 NA NA intronic Them5 NA NA intronic ENSMUSG00000028148 NA NA 3qF2.1 NA NA chr3 94148321 GATxTCT C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 59 2 0 11.258187 0.217391 0.02 -0.201638 18 5 496 141 60 60 0 0 CC 8.423416 28 0 806 0 KEEP + Them5 NO AA_6 chr4 115242917 115242917 A T exonic Cyp4a31 nonsynonymous SNV NM_001252539:c.A714T:p.Q238H exonic Cyp4a31 nonsynonymous SNV uc012djd.1:c.A759T:p.Q253H exonic ENSMUSG00000028712 nonsynonymous SNV ENSMUST00000030480:c.A714T:p.Q238H 4qD1 "Score=0.926879;Name=No.86353,chr4:115184314" NA chr4 115242917 CCAxGCT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 234 1 0 103.987234 0.633333 0.02 1.160344 22 38 626 1030 60 60 0 0 AA 40.606007 135 0 3764 0 KEEP + Cyp4a31 YES AA_6 chr4 121088112 121088112 A T exonic Gm12886 nonsynonymous SNV NM_001144948:c.T355A:p.F119I exonic Gm12886 nonsynonymous SNV uc012dkp.1:c.T355A:p.F119I exonic ENSMUSG00000078576 nonsynonymous SNV ENSMUST00000106266:c.T355A:p.F119I 4qD2.2 "Score=0.907167;Name=No.86374,chr4:120976225" NA chr4 121088112 AGAxACA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 224 0 0 41.470956 0.3 0.02 1.071208 42 18 1186 488 60 60 0 0 AA 38.766918 129 0 3565 0 KEEP - Gm12886 YES AA_6 chr4 128140995 128140995 T G exonic Csmd2 stopgain SNV NM_001281955:c.T5004G:p.Y1668X exonic Csmd2 stopgain SNV uc008uvb.1:c.T1356G:p.Y452X exonic ENSMUSG00000028804 stopgain SNV ENSMUST00000074081:c.T1677G:p.Y559X 4qD2.2 NA NA chr4 128140995 GTAxGTG T G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 61 0 0 23.129343 0.409091 0.02 -0.192908 13 9 354 253 60 60 0 0 TT 8.720534 29 0 777 0 KEEP + Csmd2 NO AA_6 chr4 128293208 128293208 A T exonic Tlr12 nonsynonymous SNV NM_205823:c.T2492A:p.L831Q exonic Tlr12 nonsynonymous SNV uc008uvf.1:c.T2492A:p.L831Q exonic ENSMUSG00000062545 nonsynonymous SNV ENSMUST00000074829:c.T2492A:p.L831Q 4qD2.2 NA NA chr4 128293208 CACxGGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999999 74 0 0 27.9859 0.366667 0.02 -0.263083 19 11 534 313 60 60 0 0 AA 10.523444 35 0 951 0 KEEP - Tlr12 YES AA_6 chr4 128757787 128757787 A T exonic Rnf19b nonsynonymous SNV NM_029219:c.A1595T:p.Y532F exonic Rnf19b nonsynonymous SNV uc008uvw.2:c.A1595T:p.Y532F exonic ENSMUSG00000028793 nonsynonymous SNV ENSMUST00000030584:c.A1598T:p.Y533F 4qD2.2 NA NA chr4 128757787 AGTxCAG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 87 0 0 43.72478 0.571429 0.02 -0.24552 12 16 328 444 60 60 0 0 AA 14.733611 49 0 1294 0 KEEP + Rnf19b YES AA_6 chr4 129698440 129698440 A T intronic Bai2 NA NA intronic Bai2 NA NA intronic ENSMUSG00000028782 NA NA 4qD2.2 NA NA chr4 129698440 CTCxTGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 80 0 0 33.840621 0.545455 0.02 -0.192927 10 12 275 347 60 60 0 0 AA 13.231999 44 0 1191 0 KEEP + Bai2 YES AA_6 chr4 132091526 132091526 C T exonic Dnajc8 nonsynonymous SNV NM_172400:c.C26T:p.A9V exonic Dnajc8 nonsynonymous SNV uc012dmi.1:c.C26T:p.A9V exonic ENSMUSG00000054405 nonsynonymous SNV ENSMUST00000067467:c.C26T:p.A9V 4qD2.3 NA NA chr4 132091526 GTGxTTC C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16246 0.162467 0.999957 49 0 0 23.767136 0.692308 0.02 -0.113674 4 9 114 230 60 60 0 0 CC 7.820578 26 0 730 0 KEEP + Dnajc8 NO AA_6 chr4 137302299 137302299 A T intronic Alpl NA NA intronic Alpl NA NA intronic ENSMUSG00000028766 NA NA 4qD3 NA NA chr4 137302299 ACCxCTT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036761 0.036766 0.999879 36 0 0 15.309344 0.833333 0.02 -0.052617 1 5 29 141 60 60 0 0 AA 6.615422 22 0 586 0 KEEP - Alpl YES AA_6 chr4 140347319 140347319 C G exonic Padi3 nonsynonymous SNV NM_011060:c.G1406C:p.G469A exonic Padi3 nonsynonymous SNV uc008vnf.1:c.G1376C:p.G459A exonic ENSMUSG00000025328 nonsynonymous SNV ENSMUST00000172098:c.G1376C:p.G459A 4qD3 NA NA chr4 140347319 TGGxCCA C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 193 0 0 27.300695 0.282609 0.02 -0.402925 33 13 920 330 60 60 0 0 CC 32.455339 108 0 2957 0 KEEP - Padi3 NO AA_6 chr4 141026385 141026385 C G exonic Spen nonsynonymous SNV NM_019763:c.G10086C:p.K3362N exonic Spen nonsynonymous SNV uc008vom.1:c.G8802C:p.K2934N exonic ENSMUSG00000040761 nonsynonymous SNV ENSMUST00000078886:c.G10017C:p.K3339N 4qE1 NA NA chr4 141026385 AATxTTG C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 155 0 0 47.585934 0.357143 0.02 1.302521 36 20 1023 539 60 60 0 0 CC 24.968832 83 0 2377 0 KEEP - Spen NO AA_6 chr4 143089450 143089450 A T intergenic "Oog4(dist=49245),Gm13040(dist=11765)" NA NA intergenic "Oog4(dist=49245),Gm13040(dist=11765)" NA NA ncRNA_exonic ENSMUSG00000083403 NA NA 4qE1 NA NA chr4 143089450 TGAxAGA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 207 2 13 79.432096 0.674419 0.02 -0.376996 14 29 396 774 60 60 0 0 AA 38.796773 129 0 3568 0 KEEP NA Oog4 YES AA_6 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077287 0.077336 0.999366 34 0 0 28.686371 1 0.02 -0.078913 0 9 0 244 0 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 NO AA_6 chr4 146035536 146035536 A T ncRNA_exonic Gm13034 NA NA ncRNA_exonic OTTMUSG00000010105 NA NA ncRNA_exonic ENSMUSG00000082195 NA NA 4qE1 "Score=0.984237;Name=No.86771,chr4:146986969" NA chr4 146035536 ACCxGGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 803 3 304 11.628126 0.052239 0.02 2.215362 127 7 3572 202 60 60 0 0 AA 137.068571 456 0 12336 0 KEEP + Gm13034 YES AA_6 chr4 40208928 40208928 T A exonic Topors nonsynonymous SNV NM_134097:c.A1388T:p.Q463L exonic Topors nonsynonymous SNV uc008shi.1:c.A1388T:p.Q463L exonic ENSMUSG00000036822 nonsynonymous SNV ENSMUST00000042575:c.A1388T:p.Q463L 4qA5 NA NA chr4 40208928 GTCxGTA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 96 0 0 32.281311 0.317073 0.02 -0.359529 28 13 776 372 60 60 0 0 TT 13.533578 45 0 1235 0 KEEP - Topors YES AA_6 chr4 43903811 43903811 A T intronic Reck NA NA intronic Reck NA NA intronic ENSMUSG00000028476 NA NA 4qB1 NA NA chr4 43903811 GAGxCAT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 82 0 0 37.757183 0.518519 0.02 -0.236754 13 14 358 392 60 60 0 0 AA 12.632448 42 0 1160 0 KEEP + Reck YES AA_6 chr4 49527253 49527253 T A exonic Mrpl50 nonsynonymous SNV NM_178603:c.A289T:p.M97L exonic Mrpl50 nonsynonymous SNV uc008svu.1:c.A289T:p.M97L exonic ENSMUSG00000044018 nonsynonymous SNV ENSMUST00000057829:c.A289T:p.M97L 4qB1 NA NA chr4 49527253 TCAxATG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 133 2 0 27.862845 0.24 0.02 -0.438417 38 12 1027 341 60 60 0 0 TT 19.545754 65 0 1737 0 KEEP - Mrpl50 YES AA_6 chr4 64817042 64817042 A T exonic Pappa synonymous SNV NM_021362:c.A798T:p.V266V exonic Pappa synonymous SNV uc008thm.1:c.A798T:p.V266V exonic ENSMUSG00000028370 synonymous SNV ENSMUST00000084501:c.A798T:p.V266V 4qC1 NA NA chr4 64817042 TGTxTCC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 144 0 0 87.188358 0.632653 0.02 -0.429664 18 31 490 864 60 60 0 0 AA 23.718449 79 0 2055 0 KEEP + Pappa YES AA_6 chr5 104479742 104479742 G A exonic Nudt9 nonsynonymous SNV NM_028794:c.G253A:p.V85M exonic Nudt9 nonsynonymous SNV uc008yka.1:c.G253A:p.V85M exonic ENSMUSG00000029310 nonsynonymous SNV ENSMUST00000031250:c.G253A:p.V85M 5qE5 NA NA chr5 104479742 AAGxTGG G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 112 0 0 10.019605 0.166667 0.02 -0.324431 25 5 695 135 60 60 0 0 GG 18.646627 62 0 1690 0 KEEP + Nudt9 NO AA_6 chr5 105756629 105756629 C A exonic Gbp11 unknown UNKNOWN exonic Gbp11 nonsynonymous SNV uc008ylc.2:c.G871T:p.G291C exonic ENSMUSG00000092021 nonsynonymous SNV ENSMUST00000171587:c.G871T:p.G291C 5qE5 NA NA chr5 105756629 TACxCAG C A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 165 0 0 33.095614 0.325581 0.02 -0.37706 29 14 822 382 60 60 0 0 CC 26.769929 89 0 2493 0 KEEP - Gbp11 NO AA_6 chr5 114201222 114201222 T A exonic Sart3 nonsynonymous SNV NM_016926:c.A1549T:p.N517Y exonic Sart3 nonsynonymous SNV uc008yym.1:c.A1549T:p.N517Y exonic ENSMUSG00000018974 nonsynonymous SNV ENSMUST00000019118:c.A1549T:p.N517Y 5qF NA NA chr5 114201222 GGTxGTA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 231 0 0 58.731983 0.428571 0.02 1.302596 32 24 890 639 60 60 0 0 TT 39.071292 130 0 3542 0 KEEP - Sart3 YES AA_6 chr5 138312438 138312438 T A exonic Pilrb2 nonsynonymous SNV NM_001024932:c.A127T:p.N43Y exonic Pilrb2 nonsynonymous SNV uc009aee.1:c.A127T:p.N43Y exonic ENSMUSG00000066682 nonsynonymous SNV ENSMUST00000085889:c.A127T:p.N43Y 5qG2 "Score=0.971242;Name=No.91006,chr5:138278021" NA chr5 138312438 GGTxGAC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 DBSNP COVERED 0.668519 0.668523 0.999993 83 0 0 27.888647 0.37931 0.02 -0.254291 18 11 497 310 60 60 0 0 TT 12.631701 42 0 1150 0 KEEP - Pilrb2 YES AA_6 chr5 146995707 146995707 G A intronic 1700001J03Rik NA NA intronic 1700001J03Rik NA NA intronic ENSMUSG00000079096 NA NA 5qG3 "Score=0.904115;Name=No.91063,chr5:147289821" NA chr5 146995707 CATxGGC G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 341 0 0 29.602136 0.15625 0.02 0.853386 81 15 2300 405 60 60 0 0 GG 61.065331 203 0 5793 0 KEEP - 1700001J03Rik NO AA_6 chr5 150556767 150556767 A C exonic B3galtl nonsynonymous SNV NM_001081204:c.A1285C:p.S429R exonic B3galtl nonsynonymous SNV uc009aqd.1:c.A127C:p.S43R exonic ENSMUSG00000051950 nonsynonymous SNV ENSMUST00000100404:c.A1285C:p.S429R 5qG3 NA NA chr5 150556767 CACxGCC A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120425 0.120436 0.999909 40 2 0 6.678278 0.3 0.02 -0.096439 7 3 198 79 60 60 0 0 AA 7.17106 24 0 620 0 KEEP + B3galtl NO AA_6 chr5 20795928 20795928 C T exonic Gsap synonymous SNV NM_175437:c.C2451T:p.I817I exonic Pion synonymous SNV uc008woj.1:c.C2451T:p.I817I exonic ENSMUSG00000039934 synonymous SNV ENSMUST00000036031:c.C2451T:p.I817I 5qA3 NA NA chr5 20795928 CATxGAA C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 59 0 0 14.919106 0.315789 0.02 -0.166524 13 6 328 172 60 60 0 0 CC 9.91217 33 0 805 0 KEEP + Gsap NO AA_6 chr5 34782984 34782984 A T intronic Fam193a NA NA intronic Fam193a NA NA intronic ENSMUSG00000037210 NA NA 5qB2 NA NA chr5 34782984 CTTxATT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 109 0 0 31.885535 0.351351 0.02 -0.33319 24 13 651 361 60 60 0 0 AA 17.742891 59 0 1591 0 KEEP + Fam193a YES AA_6 chr5 45829120 45829120 T A exonic Qdpr synonymous SNV NM_024236:c.A582T:p.A194A exonic Qdpr synonymous SNV uc008xix.2:c.A582T:p.A194A exonic ENSMUSG00000015806 synonymous SNV ENSMUST00000118097:c.A426T:p.A142A 5qB3 NA NA chr5 45829120 GTCxGCC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999998 58 0 0 9.871406 0.285714 0.02 -0.122777 10 4 284 116 60 60 0 0 TT 9.924044 33 0 900 0 KEEP - Qdpr YES AA_6 chr5 75562747 75562747 C T exonic Pdgfra synonymous SNV NM_001083316:c.C579T:p.V193V exonic Pdgfra synonymous SNV uc008xuf.1:c.C624T:p.V208V exonic ENSMUSG00000029231 synonymous SNV ENSMUST00000000476:c.C579T:p.V193V 5qC3.3 NA NA chr5 75562747 CGTxAAA C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 98 0 0 30.02138 0.333333 0.02 -0.34192 26 13 729 346 60 60 0 0 CC 14.440401 48 0 1388 0 KEEP + Pdgfra NO AA_6 chr5 77711233 77711233 T C exonic Rest synonymous SNV NM_011263:c.T2473C:p.L825L exonic Rest synonymous SNV uc008xvz.2:c.T2473C:p.L825L exonic ENSMUSG00000029249 synonymous SNV ENSMUST00000080359:c.T2473C:p.L825L 5qC3.3 NA NA chr5 77711233 GGCxTGG T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 DBSNP COVERED 0.99911 0.99911 1 248 0 0 10.491504 0.076923 0.02 1.011523 72 6 1984 168 60 60 0 0 TT 39.981295 133 0 3616 0 KEEP + Rest NO AA_6 chr5 87142779 87142779 A T exonic Tmprss11e nonsynonymous SNV NM_172880:c.T932A:p.M311K exonic Tmprss11e nonsynonymous SNV uc008xxv.1:c.T932A:p.M311K exonic ENSMUSG00000054537 nonsynonymous SNV ENSMUST00000161306:c.T932A:p.M311K 5qE1 NA NA chr5 87142779 AACxTCC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 141 0 0 87.690183 0.632653 0.02 -0.429651 18 31 487 869 60 60 0 0 AA 22.554596 75 0 2020 0 KEEP - Tmprss11e YES AA_6 chr5 88272401 88272401 T A exonic 4930432K09Rik synonymous SNV NM_028648:c.T822A:p.A274A exonic 4930432K09Rik synonymous SNV uc008xza.1:c.T822A:p.A274A exonic ENSMUSG00000002240 synonymous SNV ENSMUST00000002310:c.T822A:p.A274A 5qE1 NA NA chr5 88272401 GGCxGTT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 185 2 0 56.91935 0.359375 0.02 1.13399 41 23 1172 641 60 60 0 0 TT 25.864042 86 0 2381 0 KEEP + 4930432K09Rik YES AA_6 chr6 119900485 119900485 A T intronic Wnk1 NA NA intronic Wnk1 NA NA intronic ENSMUSG00000045962 NA NA 6qF1 NA NA chr6 119900485 ATAxACA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 67 0 0 31.591528 0.571429 0.02 -0.184137 9 12 254 321 60 60 0 0 AA 11.429927 38 0 1058 0 KEEP - Wnk1 YES AA_6 chr6 121791363 121791363 T A intronic Mug1 NA NA intronic Mug1 NA NA intronic ENSMUSG00000059908 NA NA 6qF1 "Score=0.919883;Name=No.94032,chr6:122085334" NA chr6 121791363 GGGxATT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 429 1 0 56.389356 0.217391 0.02 2.382146 90 25 2420 706 60 60 0 0 TT 73.959742 246 0 6508 0 KEEP + Mug1 YES AA_6 chr6 128358415 128358415 T A exonic Nrip2 nonsynonymous SNV NM_001162858:c.T790A:p.Y264N exonic Nrip2 nonsynonymous SNV uc012etb.1:c.T790A:p.Y264N exonic ENSMUSG00000001520 nonsynonymous SNV ENSMUST00000120405:c.T790A:p.Y264N 6qF3 NA NA chr6 128358415 AGTxACC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.999859 35 0 0 18.438406 0.466667 0.02 -0.140277 8 7 210 196 60 60 0 0 TT 5.413076 18 0 485 0 KEEP + Nrip2 YES AA_6 chr6 128475261 128475261 A T exonic Pzp nonsynonymous SNV NM_007376:c.T142A:p.C48S exonic Pzp nonsynonymous SNV uc009eef.1:c.T142A:p.C48S exonic ENSMUSG00000030359 nonsynonymous SNV ENSMUST00000032510:c.T142A:p.C48S 6qF3 NA NA chr6 128475261 CACxGGC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036763 0.036766 0.999931 35 0 0 15.409746 0.833333 0.02 -0.052617 1 5 28 142 60 60 0 0 AA 7.519136 25 0 687 0 KEEP - Pzp YES AA_6 chr6 128662269 128662269 A C intronic Klrb1 NA NA intronic 4930431A04Rik NA NA intronic ENSMUSG00000079299 NA NA 6qF3 NA NA chr6 128662269 TACxGTT A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 223 2 0 34.799077 0.230769 0.02 0.913654 60 18 1677 445 60 60 0 0 AA 33.375766 111 0 3043 0 KEEP - Klrb1 NO AA_6 chr6 148946774 148946774 T A intronic Dennd5b NA NA intronic Dennd5b NA NA intronic ENSMUSG00000030313 NA NA 6qG3 NA NA chr6 148946774 CTCxGTA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076902 0.077336 0.994391 25 0 0 7.543429 0.333333 0.02 -0.07893 6 3 173 86 60 60 0 0 TT 3.909896 13 0 358 0 KEEP - Dennd5b YES AA_6 chr6 18230438 18230438 G T intronic Cftr NA NA intronic Cftr NA NA ncRNA_intronic ENSMUSG00000087389 NA NA 6qA2 NA NA chr6 18230438 CCTxGAA G T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 86 0 0 12.902614 0.171429 0.02 -0.30692 29 6 809 170 60 60 0 0 GG 12.633457 42 0 1177 0 KEEP + Cftr NO AA_6 chr6 40946083 40946083 A T intronic Gm2663 NA NA intronic Gm2663 NA NA intronic ENSMUSG00000090480 NA NA 6qB1 "Score=0.984735;Name=No.93601,chr6:40914496" NA chr6 40946083 GTCxGAA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 219 0 12 86.908818 0.452055 0.02 1.153347 40 33 1150 930 46 46 0 0 AA 32.48545 108 0 3011 0 KEEP + Gm2663 YES AA_6 chr6 50534449 50534449 A T exonic 4921507P07Rik nonsynonymous SNV NM_027564:c.T488A:p.F163Y exonic 4921507P07Rik nonsynonymous SNV uc009bxf.1:c.T488A:p.F163Y exonic ENSMUSG00000029828 nonsynonymous SNV ENSMUST00000031852:c.T488A:p.F163Y 6qB2.3 NA NA chr6 50534449 GTAxAGG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 82 0 0 27.453106 0.423077 0.02 -0.227992 15 11 423 299 60 60 0 0 AA 13.835035 46 0 1273 0 KEEP + 4921507P07Rik YES AA_6 chr6 66629369 66629369 T C exonic Vmn1r35 nonsynonymous SNV NM_134167:c.A310G:p.T104A exonic Vmn1r35 nonsynonymous SNV uc009cer.1:c.A310G:p.T104A exonic ENSMUSG00000060699 nonsynonymous SNV ENSMUST00000071414:c.A310G:p.T104A 6qC1 "Score=0.911339;Name=No.93759,chr6:66677828" NA chr6 66629369 TCGxCAC T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 344 1 2 56.655569 0.263736 0.02 0.986807 67 24 1839 680 60 60 0 0 TT 59.523567 198 0 5404 0 KEEP - Vmn1r35 NO AA_6 chr6 68940748 68940748 T A intergenic "4930515G16Rik(dist=1425055),Rprl1(dist=336183)" NA NA ncRNA_intronic abParts NA NA downstream ENSMUSG00000076539 NA NA 6qC1 "Score=0.928046;Name=No.93788,chr6:69078771" NA chr6 68940748 CACxGTG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 183 1 0 62.490636 0.45283 0.02 1.328818 29 24 823 669 60 60 0 0 TT 30.650471 102 0 2804 0 KEEP + 4930515G16Rik YES AA_6 chr6 70165855 70165855 G C intergenic "Rprl1(dist=888687),Rpia(dist=549859)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076582 nonsynonymous SNV ENSMUST00000103383:c.G251C:p.G84A 6qC1 "Score=0.970312;Name=No.93926,chr6:70311569" NA chr6 70165855 CAGxCAG G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 114 0 0 17.163405 0.235294 0.02 -0.298124 26 8 725 214 60 60 0 0 GG 19.550978 65 0 1806 0 KEEP + Rprl1 NO AA_6 chr6 71796413 71796413 C G exonic Immt nonsynonymous SNV NM_001253681:c.C253G:p.L85V exonic Immt nonsynonymous SNV uc009che.1:c.C253G:p.L85V exonic ENSMUSG00000052337 nonsynonymous SNV ENSMUST00000064062:c.C253G:p.L85V 6qC1 NA NA chr6 71796413 AAAxTCT C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.13983 0.139832 0.999988 47 0 0 10.176984 0.363636 0.02 -0.096463 7 4 197 114 60 60 0 0 CC 8.121745 27 0 762 0 KEEP + Immt NO AA_6 chr6 83111396 83111396 G C exonic 1700003E16Rik nonsynonymous SNV NM_027948:c.G427C:p.A143P exonic 1700003E16Rik nonsynonymous SNV uc009cmy.2:c.G151C:p.A51P exonic ENSMUSG00000030030 nonsynonymous SNV ENSMUST00000032106:c.G427C:p.A143P 6qC3 NA NA chr6 83111396 CCGxCGC G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 86 0 0 23.077376 0.285714 0.02 -0.306867 25 10 701 274 60 60 0 0 GG 12.916651 43 0 1142 0 KEEP + 1700003E16Rik NO AA_6 chr6 86914019 86914019 A T exonic Aak1 nonsynonymous SNV NM_177762:c.A1557T:p.K519N exonic Aak1 nonsynonymous SNV uc009cst.1:c.A1557T:p.K519N exonic ENSMUSG00000057230 nonsynonymous SNV ENSMUST00000003710:c.A1557T:p.K519N 6qD1 NA NA chr6 86914019 AAAxGTT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 111 4 0 17.541577 0.222222 0.02 -0.31544 28 8 773 220 60 60 0 0 AA 18.046345 60 0 1659 0 KEEP + Aak1 YES AA_6 chr6 87409971 87409971 T A exonic Arhgap25 nonsynonymous SNV NM_001037727:c.A1890T:p.E630D exonic Arhgap25 nonsynonymous SNV uc009ctn.1:c.A1623T:p.E541D exonic ENSMUSG00000030047 nonsynonymous SNV ENSMUST00000071024:c.A1623T:p.E541D 6qD1 NA NA chr6 87409971 TTCxTCT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 338 2 0 44.3364 0.21978 0.02 0.888428 71 20 2025 556 60 60 0 0 TT 54.43119 181 0 5059 0 KEEP - Arhgap25 YES AA_6 chr6 87699305 87699305 T A intronic Efcc1 NA NA intronic Ccdc48 NA NA intronic ENSMUSG00000068263 NA NA 6qD1 NA NA chr6 87699305 GCCxATG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099371 0.099721 0.99649 27 0 0 7.278732 0.3 0.02 -0.087691 7 3 194 85 60 60 0 0 TT 4.507286 15 0 394 0 KEEP + Efcc1 YES AA_6 chr7 106738216 106738216 A G exonic Arrb1 nonsynonymous SNV NM_177231:c.A470G:p.K157R exonic Arrb1 nonsynonymous SNV uc009ilu.1:c.A470G:p.K157R exonic ENSMUSG00000018909 nonsynonymous SNV ENSMUST00000032995:c.A470G:p.K157R 7qE2 NA NA chr7 106738216 AGAxGAT A G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076772 0.077336 0.992708 26 0 0 7.043167 0.333333 0.02 -0.078921 6 3 171 81 60 60 0 0 AA 3.008038 10 0 281 0 KEEP + Arrb1 NO AA_6 chr7 10683666 10683666 A T exonic Vmn2r51 synonymous SNV NM_001105179:c.T1341A:p.P447P exonic Vmn2r51 synonymous SNV uc012eyp.1:c.T1341A:p.P447P exonic ENSMUSG00000058685 synonymous SNV ENSMUST00000094863:c.T1341A:p.P447P 7qA1 "Score=0.947644;Name=No.98073,chr7:10505547" NA chr7 10683666 AAGxGGA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 346 8 20 62.945883 0.333333 0.02 1.002589 52 26 1470 721 60 60 0 0 AA 65.574906 218 0 6125 0 KEEP - Vmn2r51 YES AA_6 chr7 111128669 111128669 T A downstream Olfr635 NA NA downstream Olfr635 NA NA downstream ENSMUSG00000073934 NA NA 7qE3 "Score=0.94983;Name=No.16006,chr11:108548227" NA chr7 111128669 TTAxATA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 155 2 0 36.993503 0.262295 0.02 1.151606 45 16 1209 446 60 60 0 0 TT 24.957402 83 0 2201 0 KEEP NA Olfr635 YES AA_6 chr7 112218502 112218502 C T exonic Olfr678 nonsynonymous SNV NM_146758:c.C520T:p.R174W exonic Olfr678 nonsynonymous SNV uc009ixm.1:c.C520T:p.R174W exonic ENSMUSG00000073913 nonsynonymous SNV ENSMUST00000098160:c.C520T:p.R174W 7qE3 NA NA chr7 112218502 GTCxGGA C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 75 0 0 19.044732 0.285714 0.02 -0.24544 20 8 520 225 60 60 0 0 CC 12.323267 41 0 1067 0 KEEP + Olfr678 NO AA_6 chr7 115267863 115267863 T A exonic Olfr484 nonsynonymous SNV NM_146499:c.A913T:p.R305W exonic Olfr484 nonsynonymous SNV uc009jbz.1:c.A913T:p.R305W exonic ENSMUSG00000059996 nonsynonymous SNV ENSMUST00000073580:c.A913T:p.R305W 7qE3 NA NA chr7 115267863 TCCxCAG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 133 1 0 43.214493 0.4 0.02 -0.394374 27 18 778 478 60 60 0 0 TT 22.255679 74 0 2063 0 KEEP - Olfr484 YES AA_6 chr7 116012385 116012385 A T exonic Olfr517 nonsynonymous SNV NM_001011846:c.T282A:p.F94L exonic Olfr517 nonsynonymous SNV uc009jcy.1:c.T282A:p.F94L exonic ENSMUSG00000066240 nonsynonymous SNV ENSMUST00000084753:c.T282A:p.F94L 7qE3 NA NA chr7 116012385 CCCxAAG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 182 0 0 39.705793 0.372093 0.02 -0.377077 27 16 763 444 60 60 0 0 AA 33.949348 113 0 3089 0 KEEP - Olfr517 YES AA_6 chr7 125785818 125785818 A T exonic Tmc5 nonsynonymous SNV NM_028930:c.A589T:p.S197C exonic Tmc5 nonsynonymous SNV uc009jkg.2:c.A589T:p.S197C exonic ENSMUSG00000030650 nonsynonymous SNV ENSMUST00000057320:c.A589T:p.S197C 7qF2 NA NA chr7 125785818 ACCxGCG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 132 0 0 31.117374 0.282609 0.02 -0.402983 33 13 921 368 60 60 0 0 AA 20.138501 67 0 1812 0 KEEP + Tmc5 YES AA_6 chr7 127287150 127287150 T A exonic Zp2 nonsynonymous SNV NM_011775:c.A272T:p.E91V exonic Zp2 nonsynonymous SNV uc009jmi.1:c.A272T:p.E91V exonic ENSMUSG00000030911 nonsynonymous SNV ENSMUST00000033207:c.A272T:p.E91V 7qF2 NA NA chr7 127287150 CTTxCCA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 221 0 0 78.888907 0.555556 0.02 1.123858 24 30 677 807 60 60 0 0 TT 39.090623 130 0 3609 0 KEEP - Zp2 YES AA_6 chr7 130335698 130335698 A T exonic Tnrc6a nonsynonymous SNV NM_144925:c.A5304T:p.Q1768H exonic Tnrc6a nonsynonymous SNV uc009jpf.1:c.A1497T:p.Q499H exonic ENSMUSG00000052707 nonsynonymous SNV ENSMUST00000171930:c.A1581T:p.Q527H 7qF3 NA NA chr7 130335698 ACAxAAG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 111 0 0 40.995078 0.5 0.02 -0.280593 16 16 449 430 60 60 0 0 AA 21.356344 71 0 1982 0 KEEP + Tnrc6a YES AA_6 chr7 133592350 133592350 C A exonic Atp2a1 nonsynonymous SNV NM_007504:c.G1801T:p.D601Y exonic Atp2a1 nonsynonymous SNV uc009jrf.1:c.G1801T:p.D601Y exonic ENSMUSG00000030730 nonsynonymous SNV ENSMUST00000032974:c.G1801T:p.D601Y 7qF3 NA NA chr7 133592350 GATxCAA C A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 81 2 0 10.299425 0.172414 0.02 -0.254315 24 5 685 137 60 60 0 0 CC 12.032513 40 0 1134 0 KEEP - Atp2a1 NO AA_6 chr7 134671553 134671553 A C downstream Snora30 NA NA intronic "AK169954,Srcap" NA NA intronic ENSMUSG00000053877 NA NA 7qF3 NA NA chr7 134671553 TTCxACT A C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 62 0 0 26.758324 0.526316 0.02 -0.166597 9 10 255 277 60 60 0 0 AA 9.918008 33 0 894 0 KEEP + Snora30 NO AA_6 chr7 136774247 136774247 A T exonic Wdr11 nonsynonymous SNV NM_172255:c.A2864T:p.K955M exonic Wdr11 nonsynonymous SNV uc009jzp.1:c.A563T:p.K188M exonic ENSMUSG00000042055 nonsynonymous SNV ENSMUST00000084519:c.A2864T:p.K955M 7qF3 NA NA chr7 136774247 CTAxGGA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 63 0 0 12.54497 0.416667 0.02 -0.105228 7 5 197 137 60 60 0 0 AA 11.712357 39 0 1061 0 KEEP + Wdr11 YES AA_6 chr7 141159546 141159546 A T exonic Adam12 synonymous SNV NM_007400:c.T882A:p.P294P exonic Adam12 synonymous SNV uc009kdp.1:c.T882A:p.P294P exonic ENSMUSG00000054555 synonymous SNV ENSMUST00000067680:c.T882A:p.P294P 7qF3 NA NA chr7 141159546 TCGxGGT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 54 1 0 13.506857 0.25 0.02 -0.210211 18 6 491 165 60 60 0 0 AA 8.6925 29 0 761 0 KEEP - Adam12 YES AA_6 chr7 148932500 148932500 A T intronic Muc2 NA NA intronic Muc2 NA NA intronic ENSMUSG00000025515 NA NA 7qF5 NA NA chr7 148932500 GTCxATT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 71 0 0 19.982227 0.333333 0.02 -0.235415 18 9 508 232 60 60 0 0 AA 9.924014 33 0 902 0 KEEP + Muc2 YES AA_6 chr7 149170905 149170905 G A intronic Brsk2 NA NA intronic Brsk2 NA NA intronic ENSMUSG00000053046 NA NA 7qF5 NA NA chr7 149170905 ATGxCCC G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999998 63 0 0 17.565168 0.4 0.02 -0.175302 12 8 335 196 60 60 0 0 GG 10.190284 34 0 903 0 KEEP + Brsk2 NO AA_6 chr7 15166384 15166384 G T ncRNA_exonic Nlrp5-ps NA NA exonic Vmn1r90 nonsynonymous SNV uc012ezx.1:c.C468A:p.H156Q exonic ENSMUSG00000041596 nonsynonymous SNV ENSMUST00000173766:c.C483A:p.H161Q 7qA1 "Score=0.925456;Name=No.98229,chr7:24189222" NA chr7 15166384 TAAxTGC G T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 104 0 0 7.510394 0.108108 0.02 -0.333175 33 4 912 111 60 46 0 0 GG 16.841606 56 0 1526 0 KEEP - Nlrp5-ps NO AA_6 chr7 152453212 152453212 C T exonic Tpcn2 nonsynonymous SNV NM_146206:c.G1009A:p.E337K exonic Tpcn2 nonsynonymous SNV uc009kqx.1:c.G1009A:p.E337K exonic ENSMUSG00000048677 nonsynonymous SNV ENSMUST00000058022:c.G1009A:p.E337K 7qF5 NA NA chr7 152453212 ACTxAGG C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 79 0 0 22.73098 0.25641 0.02 -0.350772 29 10 833 276 60 60 0 0 CC 9.325834 31 0 891 0 KEEP - Tpcn2 NO AA_6 chr7 26426786 26426786 T A exonic Bckdha synonymous SNV NM_007533:c.A168T:p.P56P exonic Bckdha synonymous SNV uc009fth.2:c.A168T:p.P56P exonic ENSMUSG00000060376 synonymous SNV ENSMUST00000071329:c.A168T:p.P56P 7qA3 NA NA chr7 26426786 CCCxGGG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 94 1 0 30.73085 0.363636 0.02 -0.289399 21 12 597 344 60 60 0 0 TT 13.224023 44 0 1190 0 KEEP - Bckdha YES AA_6 chr7 28301617 28301617 A T exonic Prx nonsynonymous SNV NM_198048:c.A940T:p.T314S exonic Prx nonsynonymous SNV uc012fgi.1:c.A523T:p.T175S exonic ENSMUSG00000053198 nonsynonymous SNV ENSMUST00000065487:c.A940T:p.T314S 7qA3 NA NA chr7 28301617 GACxCCC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 79 0 0 37.510209 0.424242 0.02 -0.289389 19 14 525 406 60 60 0 0 AA 10.809682 36 0 945 0 KEEP + Prx YES AA_6 chr7 35706183 35706183 T G intronic Pepd NA NA intronic Pepd NA NA intronic ENSMUSG00000063931 NA NA 7qB1 NA NA chr7 35706183 GCCxTGG T G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 86 2 0 19.533674 0.277778 0.02 -0.315585 26 10 728 240 60 60 0 0 TT 12.303969 41 0 1111 0 KEEP + Pepd NO AA_6 chr7 36322526 36322526 T C intronic Tdrd12 NA NA intronic Tdrd12 NA NA intronic ENSMUSG00000030491 NA NA 7qB2 NA NA chr7 36322526 CACxCCT T C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 40 2 0 16.036253 0.6 0.02 -0.087676 4 6 112 161 60 60 0 0 TT 7.219007 24 0 670 0 KEEP - Tdrd12 NO AA_6 chr7 3819813 3819813 T A intronic "Pira1,Pira11,Pira4,Pira7" NA NA ncRNA_exonic AK137448 NA NA ncRNA_exonic ENSMUSG00000074420 NA NA 7qA1 "Score=0.991842;Name=No.96070,chr7:3667619" NA chr7 3819813 TGCxGTC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 151 1 0 156.695794 0.716216 0.02 1.046309 21 53 594 1506 60 60 0 0 TT 18.044834 60 0 1641 0 KEEP - Pira1 YES AA_6 chr7 49450780 49450780 T A exonic Vmn2r60 synonymous SNV NM_001105057:c.T2196A:p.A732A exonic Vmn2r60 synonymous SNV uc012fiw.1:c.T2196A:p.A732A exonic ENSMUSG00000090619 synonymous SNV ENSMUST00000166447:c.T2196A:p.A732A 7qB3 "Score=0.944123;Name=No.101217,chr7:49685057" NA chr7 49450780 TGCxGAA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 390 0 6 193.676242 0.594828 0.02 2.47171 47 69 1324 1948 60 60 0 0 TT 72.175869 240 0 6632 0 KEEP + Vmn2r60 YES AA_6 chr7 51024578 51024578 A T exonic Klk12 nonsynonymous SNV NM_027097:c.A10T:p.S4C exonic Klk12 nonsynonymous SNV uc012fji.1:c.A10T:p.S4C exonic ENSMUSG00000044430 nonsynonymous SNV ENSMUST00000014063:c.A10T:p.S4C 7qB4 NA NA chr7 51024578 TTCxGCA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 123 2 0 37.169684 0.384615 0.02 -0.341953 24 15 672 413 70 70 0 0 AA 18.948747 63 0 1743 0 KEEP - Klk12 YES AA_6 chr7 51102350 51102350 T A intronic Klk5 NA NA intronic Klk5 NA NA intronic ENSMUSG00000074155 NA NA 7qB4 NA NA chr7 51102350 CCCxCAG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 123 0 0 34.579542 0.5 0.02 -0.227851 13 13 355 362 60 60 0 0 TT 23.737024 79 0 2200 0 KEEP + Klk5 YES AA_6 chr7 52070538 52070538 G C UTR5 Atf5 NA NA UTR5 Atf5 NA NA UTR5 ENSMUSG00000038539 NA NA 7qB4 NA NA chr7 52070538 ATGxCTG G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260929 0.260965 0.999863 39 0 0 8.101923 0.25 0.02 -0.140286 12 4 335 101 60 60 0 0 GG 6.014029 20 0 540 0 KEEP - Atf5 NO AA_6 chr7 53354581 53354581 T G exonic Kcnj11 nonsynonymous SNV NM_010602:c.A687C:p.E229D exonic Kcnj11 nonsynonymous SNV uc009gyc.1:c.A687C:p.E229D exonic ENSMUSG00000070561 nonsynonymous SNV ENSMUST00000094412:c.A687C:p.E229D 7qB4 NA NA chr7 53354581 AACxTCG T G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 109 0 0 6.982715 0.095238 0.02 -0.367862 38 4 1040 108 60 60 0 0 TT 16.242168 54 0 1498 0 KEEP - Kcnj11 NO AA_6 chr7 53480508 53480508 T A intronic Ush1c NA NA intronic Ush1c NA NA intronic ENSMUSG00000030838 NA NA 7qB4 NA NA chr7 53480508 TCCxTCT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 151 0 0 14.548436 0.162791 0.02 -0.377086 36 7 1023 195 60 60 0 0 TT 27.371911 91 0 2540 0 KEEP - Ush1c YES AA_6 chr7 6433378 6433378 T A exonic Olfr5 nonsynonymous SNV NM_146914:c.A488T:p.K163M exonic Olfr5 nonsynonymous SNV uc009fbo.1:c.A488T:p.K163M exonic ENSMUSG00000066844 nonsynonymous SNV ENSMUST00000086319:c.A506T:p.K169M 7qA1 NA NA chr7 6433378 GTCxTGA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 175 2 0 42.318416 0.295082 0.02 1.258613 43 18 1212 498 60 60 0 0 TT 27.631287 92 0 2535 0 KEEP - Olfr5 YES AA_6 chr7 89419453 89419453 A T intronic Sh3gl3 NA NA intronic Sh3gl3 NA NA intronic ENSMUSG00000030638 NA NA 7qD3 NA NA chr7 89419453 CAGxGTG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 45 0 0 18.176955 0.4375 0.02 -0.140298 9 7 250 196 60 60 0 0 AA 6.314526 21 0 567 0 KEEP + Sh3gl3 YES AA_6 chr7 93313670 93313670 A T exonic Vmn2r75 nonsynonymous SNV NM_001102578:c.T1124A:p.V375E exonic Vmn2r75 nonsynonymous SNV uc009ven.1:c.T1124A:p.V375E exonic ENSMUSG00000090436 nonsynonymous SNV ENSMUST00000167830:c.T1124A:p.V375E 7qD3 "Score=0.897409;Name=No.101508,chr7:92449435" NA chr7 93313670 AATxCAG A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 97 0 0 37.081004 0.348837 0.02 -0.377 28 15 741 420 60 60 0 0 AA 13.80692 49 1 1306 8 KEEP - Vmn2r75 YES AA_6 chr8 114237935 114237935 G C exonic Bcar1 nonsynonymous SNV NM_001198839:c.C1326G:p.S442R exonic Bcar1 nonsynonymous SNV uc009nmt.2:c.C1326G:p.S442R exonic ENSMUSG00000031955 nonsynonymous SNV ENSMUST00000034433:c.C1323G:p.S441R 8qE1 NA NA chr8 114237935 TTGxCTG G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818376 0.818465 0.999892 66 0 0 7.560713 0.111111 0.02 -0.315667 32 4 889 111 60 60 0 0 GG 6.916612 23 0 631 0 KEEP - Bcar1 NO AA_6 chr8 114506475 114506475 T A exonic Adat1 synonymous SNV NM_013925:c.A615T:p.S205S exonic Adat1 synonymous SNV uc009nnc.1:c.A615T:p.S205S exonic ENSMUSG00000031949 synonymous SNV ENSMUST00000120457:c.A615T:p.S205S 8qE1 NA NA chr8 114506475 GAGxGAC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 86 0 0 24.179606 0.285714 0.02 -0.306876 25 10 682 285 60 60 0 0 TT 13.527882 45 0 1209 0 KEEP - Adat1 YES AA_6 chr8 23239228 23239228 C T exonic Nek3 nonsynonymous SNV NM_001162947:c.G1465A:p.V489M exonic Nek3 nonsynonymous SNV uc012gbb.1:c.G1465A:p.V489M exonic ENSMUSG00000031478 nonsynonymous SNV ENSMUST00000033865:c.G1459A:p.V487M 8qA2 NA NA chr8 23239228 ACAxCCA C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 187 0 0 13.225001 0.098592 0.02 1.073044 64 7 1775 198 60 60 0 0 CC 27.928454 93 0 2585 0 KEEP - Nek3 NO AA_6 chr8 34359390 34359390 T A intronic Wrn NA NA intronic Wrn NA NA intronic ENSMUSG00000031583 NA NA 8qA3 NA NA chr8 34359390 TCAxCAC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 82 0 0 25.424224 0.333333 0.02 -0.289335 22 11 610 293 60 60 0 0 TT 12.326523 41 0 1096 0 KEEP - Wrn YES AA_6 chr8 72900250 72900250 G C exonic Comp nonsynonymous SNV NM_016685:c.G752C:p.C251S exonic Comp nonsynonymous SNV uc009mad.2:c.G752C:p.C251S exonic ENSMUSG00000031849 nonsynonymous SNV ENSMUST00000003659:c.G752C:p.C251S 8qB3.3 NA NA chr8 72900250 CTTxCGT G C Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 147 0 0 27.018048 0.1875 0.02 1.22352 52 12 1470 347 60 60 0 0 GG 21.05673 70 0 1984 0 KEEP + Comp NO AA_6 chr8 73437095 73437095 C G exonic Map1s nonsynonymous SNV NM_173013:c.C744G:p.F248L exonic "Map1s,Mtap1s" nonsynonymous SNV uc012gfm.1:c.C417G:p.F139L exonic ENSMUSG00000019261 nonsynonymous SNV ENSMUST00000019405:c.C744G:p.F248L 8qB3.3 NA NA chr8 73437095 CTTxTTC C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 187 4 0 12.92426 0.098592 0.02 1.072719 64 7 1790 195 60 60 0 0 CC 25.269204 84 0 2402 0 KEEP + Map1s NO AA_6 chr8 74895581 74895581 T A intronic Eps15l1 NA NA intronic Eps15l1 NA NA intronic ENSMUSG00000006276 NA NA 8qB3.3 NA NA chr8 74895581 CACxCAC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 117 0 0 9.674805 0.111111 0.02 -0.394638 40 5 1143 141 60 60 0 0 TT 16.788657 56 0 1518 0 KEEP - Eps15l1 YES AA_6 chr8 86207957 86207957 A T exonic Pkn1 synonymous SNV NM_001199593:c.T939A:p.P313P exonic Pkn1 synonymous SNV uc009mkw.2:c.T939A:p.P313P exonic ENSMUSG00000057672 synonymous SNV ENSMUST00000005616:c.T924A:p.P308P 8qC2 NA NA chr8 86207957 CCCxGGC A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.999859 33 0 0 22.611378 0.727273 0.02 -0.096437 3 8 85 216 60 60 0 0 AA 5.413246 18 0 494 0 KEEP - Pkn1 YES AA_6 chr8 86216603 86216603 T A exonic Pkn1 nonsynonymous SNV NM_001199593:c.A269T:p.D90V exonic Pkn1 nonsynonymous SNV uc009mkw.2:c.A269T:p.D90V exonic ENSMUSG00000057672 nonsynonymous SNV ENSMUST00000005616:c.A254T:p.D85V 8qC2 NA NA chr8 86216603 AAGxCTA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97676 0.976865 0.999892 91 0 0 119.401048 0.763636 0.02 1.2134 13 42 360 1125 60 60 0 0 TT 6.917441 23 0 629 0 KEEP - Pkn1 YES AA_6 chr8 89248902 89248902 G A UTR3 Siah1a NA NA UTR3 Siah1a NA NA UTR3 ENSMUSG00000036840 NA NA 8qC3 "Score=0.961263;Name=No.60534,chr15:38505014" NA chr8 89248902 GCCxTTT G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 158 0 0 10.650649 0.084507 0.02 0.976147 65 6 1515 167 60 29 0 0 GG 21.9301 73 0 1772 0 KEEP - Siah1a NO AA_6 chr9 105764378 105764378 A T exonic Col6a5 nonsynonymous SNV NM_001167923:c.T7685A:p.V2562E exonic Gm7455 nonsynonymous SNV uc009riv.2:c.T7682A:p.V2561E exonic ENSMUSG00000091345 nonsynonymous SNV ENSMUST00000165165:c.T7682A:p.V2561E 9qF1 NA NA chr9 105764378 TACxCCT A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 66 1 0 25.111104 0.6 0.02 -0.131483 6 9 149 252 60 60 0 0 AA 12.010816 40 0 1003 0 KEEP - Col6a5 YES AA_6 chr9 108396116 108396116 G A exonic Usp19 synonymous SNV NM_001168371:c.G645A:p.G215G exonic Usp19 synonymous SNV uc009rpt.2:c.G642A:p.G214G exonic ENSMUSG00000006676 synonymous SNV ENSMUST00000006854:c.G642A:p.G214G 9qF2 NA NA chr9 108396116 AGGxCCA G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 87 1 0 16.822707 0.304348 0.02 -0.200709 16 7 430 196 60 60 0 0 GG 15.182249 54 1 1462 9 KEEP + Usp19 NO AA_6 chr9 108993322 108993322 A T intronic Ccdc51 NA NA intronic Ccdc51 NA NA intronic ENSMUSG00000025645 NA NA 9qF2 NA NA chr9 108993322 CAGxGAA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999998 59 0 0 31.227685 0.6875 0.02 -0.140303 5 11 142 303 60 60 0 0 AA 9.92614 33 0 921 0 KEEP + Ccdc51 YES AA_6 chr9 109095123 109095123 T A intronic Fbxw13 NA NA intronic Fbxw13 NA NA intronic ENSMUSG00000049314 NA NA 9qF2 NA NA chr9 109095123 CAAxAAC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 76 0 0 19.048233 0.307692 0.02 -0.227967 18 8 484 222 60 60 0 0 TT 14.132779 47 0 1249 0 KEEP - Fbxw13 YES AA_6 chr9 110538975 110538975 C G intronic Nbeal2 NA NA intronic Nbeal2 NA NA intronic ENSMUSG00000056724 NA NA 9qF2 NA NA chr9 110538975 GTGxCAG C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 135 0 0 27.662936 0.292683 0.02 -0.359468 29 12 802 327 60 60 0 0 CC 24.35687 81 0 2234 0 KEEP - Nbeal2 NO AA_6 chr9 19613507 19613507 T A exonic Olfr859 synonymous SNV NM_146526:c.T744A:p.V248V exonic Olfr859 synonymous SNV uc009ohv.1:c.T744A:p.V248V exonic ENSMUSG00000066903 synonymous SNV ENSMUST00000086480:c.T744A:p.V248V 9qA3 "Score=0.936229;Name=No.105326,chr9:19509056" NA chr9 19613507 TGTxTGC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 235 2 12 107.774629 0.625 0.02 1.037551 24 40 649 1070 60 60 0 0 TT 42.41013 141 0 3914 0 KEEP + Olfr859 YES AA_6 chr9 31208310 31208310 T G intronic Nfrkb NA NA intronic Nfrkb NA NA intronic ENSMUSG00000042185 NA NA 9qA4 NA NA chr9 31208310 AATxTTA T G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 43 0 0 14.969135 0.352941 0.02 -0.149076 11 6 307 169 60 60 0 0 TT 6.918404 23 0 645 0 KEEP + Nfrkb NO AA_6 chr9 34815256 34815256 T A intronic Kirrel3 NA NA intronic Kirrel3 NA NA intronic ENSMUSG00000032036 NA NA 9qA4 NA NA chr9 34815256 GTAxGTG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 112 2 0 70.344479 0.727273 0.02 -0.289372 9 24 246 673 60 60 0 0 TT 21.024278 70 0 1838 0 KEEP + Kirrel3 YES AA_6 chr9 38992070 38992070 T A exonic Olfr943 synonymous SNV NM_146326:c.T306A:p.A102A exonic Olfr943 synonymous SNV uc009oxr.1:c.T306A:p.A102A exonic ENSMUSG00000062149 synonymous SNV ENSMUST00000071617:c.T306A:p.A102A 9qA5.1 NA NA chr9 38992070 GGCxCAG T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 222 1 0 46.70858 0.289855 0.02 1.090398 49 20 1369 552 60 60 0 0 TT 38.439535 128 0 3524 0 KEEP + Olfr943 YES AA_6 chr9 52484188 52484188 T A UTR3 AI593442 NA NA UTR3 AI593442 NA NA UTR3 ENSMUSG00000078307 NA NA 9qA5.3 NA NA chr9 52484188 ACAxCTC T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 209 0 0 58.070771 0.358209 0.02 1.107941 43 24 1172 656 60 60 0 0 TT 34.885876 116 0 3168 0 KEEP - AI593442 YES AA_6 chr9 54249012 54249012 T A exonic Dmxl2 synonymous SNV NM_172771:c.A6261T:p.S2087S exonic Dmxl2 synonymous SNV uc009pqz.2:c.A3168T:p.S1056S exonic ENSMUSG00000041268 synonymous SNV ENSMUST00000118163:c.A6261T:p.S2087S 9qA5.3 NA NA chr9 54249012 AACxGAT T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 135 0 0 100.578151 0.648148 0.02 1.213231 19 35 534 991 60 60 0 0 TT 23.454318 78 0 2119 0 KEEP - Dmxl2 YES AA_6 chr9 54490506 54490506 G A intronic Acsbg1 NA NA intronic Acsbg1 NA NA intronic ENSMUSG00000032281 NA NA 9qA5.3 NA NA chr9 54490506 GCTxGTG G A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 87 0 0 70.244016 0.705882 0.02 -0.297737 10 24 262 677 60 60 0 0 GG 12.633958 42 0 1187 0 KEEP - Acsbg1 NO AA_6 chr9 60223818 60223818 T A exonic Thsd4 synonymous SNV NM_001040426:c.A957T:p.A319A exonic Thsd4 synonymous SNV uc009pyy.2:c.A957T:p.A319A exonic ENSMUSG00000032289 synonymous SNV ENSMUST00000171654:c.A957T:p.A319A 9qB NA NA chr9 60223818 GGAxGCA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 131 0 0 16.531533 0.259259 0.02 -0.236723 20 7 540 199 60 60 0 0 TT 25.85002 86 0 2304 0 KEEP - Thsd4 YES AA_6 chr9 64062343 64062343 C G exonic Map2k1 nonsynonymous SNV NM_008927:c.G154C:p.A52P exonic Map2k1 nonsynonymous SNV uc009qbp.1:c.G154C:p.A52P exonic ENSMUSG00000004936 nonsynonymous SNV ENSMUST00000005066:c.G154C:p.A52P 9qC NA NA chr9 64062343 AGGxCTC C G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 305 1 0 24.200033 0.216667 0.02 1.169536 47 13 1274 316 60 60 0 0 CC 59.892999 200 0 5313 0 KEEP - Map2k1 NO AA_6 chr9 87600283 87600283 T A exonic Tbx18 nonsynonymous SNV NM_023814:c.A1615T:p.N539Y exonic Tbx18 nonsynonymous SNV uc009qyh.2:c.A1615T:p.N539Y exonic ENSMUSG00000032419 nonsynonymous SNV ENSMUST00000034991:c.A1615T:p.N539Y 9qE3.1 NA NA chr9 87600283 AGTxATA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 60 0 0 9.855929 0.2 0.02 -0.219214 20 5 569 129 60 60 0 0 TT 8.420579 28 0 764 0 KEEP - Tbx18 YES AA_6 chr9 88655439 88655439 T A intergenic "Bcl2a1d(dist=28751),Trim43c(dist=78563)" NA NA ncRNA_exonic AK077175 NA NA exonic ENSMUSG00000090760 nonsynonymous SNV ENSMUST00000166944:c.T296A:p.V99D 9qE3.1 "Score=0.979199;Name=No.105490,chr9:89036112" NA chr9 88655439 GGGxTAA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053793 0.054137 0.993634 42 0 17 7.23235 0.375 0.02 -0.070151 5 3 141 81 15 29 0 0 TT 7.21224 24 0 640 0 KEEP + Bcl2a1d YES AA_6 chrX 138024657 138024657 A T exonic Col4a5 nonsynonymous SNV NM_001163155:c.A995T:p.Q332L exonic Col4a5 nonsynonymous SNV uc009ulo.2:c.A995T:p.Q332L exonic ENSMUSG00000031274 nonsynonymous SNV ENSMUST00000112931:c.A995T:p.Q332L XqF2 NA NA chrX 138024657 GTCxAAA A T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 85 2 0 54.695051 1 0.02 -0.157816 0 17 0 466 0 60 0 0 AA 16.241841 54 0 1492 0 KEEP + Col4a5 YES AA_6 chrX 151590211 151590211 T A intergenic "1700042B14Rik(dist=7819),Sat1(dist=57471)" NA NA intergenic "1700042B14Rik(dist=7819),Sat1(dist=57471)" NA NA ncRNA_exonic ENSMUSG00000083823 NA NA XqF3 "Score=0.967588;Name=No.72214,chr18:64607778" NA chrX 151590211 CTTxGGA T A Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 95 1 22 69.412751 0.956522 0.02 -0.201662 1 22 22 607 29 36 0 0 TT 16.828239 56 0 1535 0 KEEP NA 1700042B14Rik YES AA_6 chrX 38646604 38646604 A G intergenic "Cypt14(dist=1429823),Gria3(dist=107874)" NA NA intergenic "Cypt14(dist=1429823),Gria3(dist=107427)" NA NA downstream ENSMUSG00000081880 NA NA XqA3.3 "Score=0.937075;Name=No.105006,chr8:78235369" NA chrX 38646604 TCAxAAG A G Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 116 1 7 18.161902 0.266667 0.02 -0.315626 22 8 622 219 60 37 0 0 AA 15.305636 51 0 1400 0 KEEP NA Cypt14 NO AA_6 chrX 61525922 61525922 C T exonic Slitrk4 nonsynonymous SNV NM_178740:c.G313A:p.G105R exonic Slitrk4 nonsynonymous SNV uc009tip.1:c.G313A:p.G105R exonic ENSMUSG00000046699 nonsynonymous SNV ENSMUST00000114679:c.G313A:p.G105R XqA7.1 NA NA chrX 61525922 GCCxGAG C T Ot9363_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index25_ACTGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162456 0.162467 0.999931 47 0 0 37.385089 0.923077 0.02 -0.113972 1 12 28 332 60 60 0 0 CC 7.512598 25 0 632 0 KEEP - Slitrk4 NO AA_7 chr10 126482014 126482014 A T intronic Mettl1 NA NA intronic Mettl1 NA NA intronic ENSMUSG00000006732 NA NA 10qD3 NA NA chr10 126482014 AGCxCGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 79 0 0 10.033201 0.119048 0.02 -0.377052 37 5 1019 143 60 60 0 0 AA 9.021395 30 0 803 0 KEEP + Mettl1 YES AA_7 chr10 127664095 127664095 T A intronic Mip NA NA intronic Mip NA NA intronic ENSMUSG00000025389 NA NA 10qD3 NA NA chr10 127664095 CCCxTTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 184 1 0 12.580211 0.097222 0.02 0.965982 65 7 1830 192 60 60 0 0 TT 23.132935 77 0 2134 0 KEEP + Mip YES AA_7 chr10 127755378 127755378 T G exonic Pan2 nonsynonymous SNV NM_001252326:c.T3232G:p.F1078V exonic Pan2 nonsynonymous SNV uc007hmh.1:c.T928G:p.F310V exonic ENSMUSG00000005682 nonsynonymous SNV ENSMUST00000105236:c.T3157G:p.F1053V 10qD3 NA NA chr10 127755378 GACxTCC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 126 0 0 19.093446 0.174603 0.02 1.045066 52 11 1459 265 60 60 0 0 TT 13.836397 46 0 1283 0 KEEP + Pan2 NO AA_7 chr10 128062336 128062336 T A exonic Rps26 nonsynonymous SNV NM_013765:c.A239T:p.H80L exonic Rps26 nonsynonymous SNV uc007hno.2:c.A239T:p.H80L exonic ENSMUSG00000025362 nonsynonymous SNV ENSMUST00000026420:c.A239T:p.H80L 10qD3 NA NA chr10 128062336 CTAxGGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 193 0 0 11.183223 0.092308 0.02 1.125336 59 6 1596 170 60 60 0 0 TT 28.569636 95 0 2565 0 KEEP - Rps26 YES AA_7 chr10 12905349 12905349 T A intronic Ltv1 NA NA intronic Ltv1 NA NA intronic ENSMUSG00000019814 NA NA 10qA2 NA NA chr10 12905349 GCTxATG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 211 0 0 27.117695 0.160494 0.02 0.985008 68 13 1840 364 60 60 0 0 TT 32.476672 108 0 2891 0 KEEP - Ltv1 YES AA_7 chr10 129310896 129310896 T G exonic Olfr814 nonsynonymous SNV NM_207159:c.A916C:p.I306L exonic Olfr814 nonsynonymous SNV uc007hqv.1:c.A916C:p.I306L exonic ENSMUSG00000059134 nonsynonymous SNV ENSMUST00000081367:c.A916C:p.I306L 10qD3 "Score=0.940244;Name=No.6050,chr10:129323542" NA chr10 129310896 ATAxTTT T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999998 103 0 0 41.383224 0.293103 0.02 1.285274 41 17 1097 485 60 60 0 0 TT 9.924666 33 0 897 0 KEEP - Olfr814 NO AA_7 chr10 129823414 129823414 T A exonic Vmn2r84 synonymous SNV NM_001081448:c.A1992T:p.T664T exonic Vmn2r84 synonymous SNV uc007hrn.1:c.A1992T:p.T664T exonic ENSMUSG00000070601 synonymous SNV ENSMUST00000094502:c.A1992T:p.T664T 10qD3 "Score=0.932;Name=No.6058,chr10:129882202" NA chr10 129823414 CACxGTA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 600 9 61 32.389892 0.099415 0.02 3.586099 154 17 4357 483 60 60 0 0 TT 98.342615 327 0 8993 0 KEEP - Vmn2r84 YES AA_7 chr10 129889406 129889406 T A exonic Vmn2r86 synonymous SNV NM_001103365:c.A1281T:p.T427T exonic Vmn2r86 synonymous SNV uc009vad.1:c.A1281T:p.T427T exonic ENSMUSG00000092162 synonymous SNV ENSMUST00000170257:c.A1281T:p.T427T 10qD3 "Score=0.932;Name=No.6058,chr10:129821815" NA chr10 129889406 TTCxGTA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 274 0 0 11.173509 0.056452 0.02 2.205186 117 7 3314 195 60 60 0 0 TT 34.873913 116 0 3214 0 KEEP - Vmn2r86 YES AA_7 chr10 19981752 19981752 A T exonic Map7 nonsynonymous SNV NM_001198635:c.A863T:p.E288V exonic Mtap7 nonsynonymous SNV uc007eno.2:c.A839T:p.E280V exonic ENSMUSG00000019996 nonsynonymous SNV ENSMUST00000020173:c.A839T:p.E280V 10qA3 NA NA chr10 19981752 CTGxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 157 0 0 19.031811 0.131579 0.02 0.930883 66 10 1879 271 60 60 0 0 AA 18.649062 62 0 1730 0 KEEP + Map7 YES AA_7 chr10 19986599 19986599 C T exonic Map7 nonsynonymous SNV NM_001198635:c.C958T:p.R320C exonic Mtap7 nonsynonymous SNV uc007eno.2:c.C934T:p.R312C exonic ENSMUSG00000019996 nonsynonymous SNV ENSMUST00000020173:c.C934T:p.R312C 10qA3 NA NA chr10 19986599 GCCxGCA C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 113 0 0 39.948717 0.340426 0.02 -0.411952 31 16 786 454 60 60 0 0 CC 15.015834 50 0 1219 0 KEEP + Map7 NO AA_7 chr10 22005526 22005526 T A exonic H60b nonsynonymous SNV NM_001177775:c.T106A:p.F36I exonic H60b nonsynonymous SNV uc011xbl.1:c.T106A:p.F36I exonic ENSMUSG00000075297 nonsynonymous SNV ENSMUST00000105522:c.T106A:p.F36I 10qA3 NA NA chr10 22005526 ACTxTCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 369 0 1 22.152638 0.08125 0.02 3.336412 147 13 4126 355 60 60 0 0 TT 42.711896 142 0 3960 0 KEEP + H60b YES AA_7 chr10 23797004 23797004 T A exonic Taar8a synonymous SNV NM_001010830:c.T699A:p.S233S exonic Taar8a synonymous SNV uc007eqo.1:c.T699A:p.S233S exonic ENSMUSG00000050804 synonymous SNV ENSMUST00000051133:c.T699A:p.S233S 10qA4 NA NA chr10 23797004 TTCxGTA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 228 0 32 12.373097 0.077778 0.02 0.906119 83 7 2336 197 60 60 0 0 TT 34.591192 115 0 3212 0 KEEP + Taar8a YES AA_7 chr10 28212781 28212781 A T exonic Ptprk nonsynonymous SNV NM_008983:c.A1942T:p.M648L exonic Ptprk nonsynonymous SNV uc007esk.1:c.A1942T:p.M648L exonic ENSMUSG00000019889 nonsynonymous SNV ENSMUST00000020042:c.A1942T:p.M648L 10qA4 NA NA chr10 28212781 GCCxTGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 131 0 0 16.383951 0.140351 0.02 1.195403 49 8 1353 226 60 60 0 0 AA 15.638766 52 0 1413 0 KEEP + Ptprk YES AA_7 chr10 41207278 41207278 C T exonic Smpd2 nonsynonymous SNV NM_009213:c.G994A:p.V332I exonic Smpd2 nonsynonymous SNV uc007exs.1:c.G454A:p.V152I exonic ENSMUSG00000019822 nonsynonymous SNV ENSMUST00000019965:c.G994A:p.V332I 10qB2 NA NA chr10 41207278 AAAxGAT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 51 0 0 8.040227 0.16 0.02 -0.219025 21 4 502 109 60 60 0 0 CC 6.894956 23 0 549 0 KEEP - Smpd2 NO AA_7 chr10 51335383 51335383 G A exonic Gprc6a nonsynonymous SNV NM_153071:c.C2075T:p.P692L exonic Gprc6a nonsynonymous SNV uc007faw.1:c.C1862T:p.P621L exonic ENSMUSG00000019905 nonsynonymous SNV ENSMUST00000105478:c.C1862T:p.P621L 10qB3 NA NA chr10 51335383 TTGxGGT G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780989 0.78106 0.999909 60 0 0 10.62375 0.147059 0.02 -0.298134 29 5 813 144 60 60 0 0 GG 6.918187 23 0 642 0 KEEP - Gprc6a NO AA_7 chr10 52039476 52039476 A T exonic Dcbld1 nonsynonymous SNV NM_025705:c.A1186T:p.I396F exonic Dcbld1 nonsynonymous SNV uc007fbe.2:c.A973T:p.I325F exonic ENSMUSG00000019891 nonsynonymous SNV ENSMUST00000105476:c.A973T:p.I325F 10qB3 NA NA chr10 52039476 CCTxTCG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 101 2 0 11.495072 0.115385 0.02 1.239324 46 6 1227 167 60 60 0 0 AA 11.724857 39 0 1021 0 KEEP + Dcbld1 YES AA_7 chr10 5991613 5991613 T A exonic Akap12 synonymous SNV NM_031185:c.A2052T:p.S684S exonic Akap12 synonymous SNV uc007ehh.1:c.A1737T:p.S579S exonic ENSMUSG00000038587 synonymous SNV ENSMUST00000045730:c.A2052T:p.S684S 10qA1 NA NA chr10 5991613 ATCxGAA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 196 2 0 8.153616 0.067568 0.02 0.948468 69 5 1928 137 60 60 0 0 TT 29.759986 99 0 2702 0 KEEP - Akap12 YES AA_7 chr10 61749112 61749112 G A exonic Hk1 synonymous SNV NM_001146100:c.C1554T:p.S518S exonic Hk1 synonymous SNV uc007fgy.2:c.C1554T:p.S518S exonic ENSMUSG00000037012 synonymous SNV ENSMUST00000099691:c.C1554T:p.S518S 10qB4 NA NA chr10 61749112 GATxCTC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 228 0 0 7.853067 0.061728 0.02 0.887072 76 5 2139 136 60 60 0 0 GG 32.775599 109 0 3078 0 KEEP - Hk1 NO AA_7 chr10 69464827 69464827 A T exonic Ank3 nonsynonymous SNV NM_170687:c.A2315T:p.Q772L exonic Ank3 nonsynonymous SNV uc007fni.1:c.A2315T:p.Q772L exonic ENSMUSG00000069601 nonsynonymous SNV ENSMUST00000092433:c.A2315T:p.Q772L 10qB5.3 NA NA chr10 69464827 CCCxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.95449 0.954491 0.999999 91 0 0 7.399148 0.081633 0.02 -0.429677 45 4 1261 115 60 60 0 0 AA 10.526103 35 0 962 0 KEEP + Ank3 YES AA_7 chr10 69650393 69650393 A T intronic Ccdc6 NA NA intronic Ccdc6 NA NA intronic ENSMUSG00000048701 NA NA 10qB5.3 NA NA chr10 69650393 GACxGTC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 86 0 0 8.009111 0.108108 0.02 -0.333209 33 4 909 116 60 60 0 0 AA 12.330409 41 0 1110 0 KEEP + Ccdc6 YES AA_7 chr10 6979645 6979645 C A exonic Ppp1r14c nonsynonymous SNV NM_133485:c.G230T:p.R77L exonic Ppp1r14c nonsynonymous SNV uc007ehq.1:c.G230T:p.R77L exonic ENSMUSG00000040653 nonsynonymous SNV ENSMUST00000043374:c.G230T:p.R77L 10qA1 NA NA chr10 6979645 TTAxGGT C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 130 1 0 22.413868 0.208333 0.02 -0.420433 38 10 881 283 60 60 0 0 CC 20.42349 68 0 1644 0 KEEP - Ppp1r14c NO AA_7 chr10 77494599 77494599 T A exonic Aire synonymous SNV NM_001271552:c.A1368T:p.L456L exonic Aire synonymous SNV uc007fwq.1:c.A351T:p.L117L exonic ENSMUSG00000000731 synonymous SNV ENSMUST00000105396:c.A1365T:p.L455L 10qC1 NA NA chr10 77494599 ATGxAGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999999 75 0 0 8.076909 0.125 0.02 -0.280568 28 4 749 114 60 60 0 0 TT 10.494492 35 0 905 0 KEEP - Aire YES AA_7 chr10 80538318 80538318 A T exonic Thop1 nonsynonymous SNV NM_022653:c.A292T:p.S98C exonic Thop1 nonsynonymous SNV uc007gfv.2:c.A292T:p.S98C exonic ENSMUSG00000004929 nonsynonymous SNV ENSMUST00000005057:c.A292T:p.S98C 10qC1 NA NA chr10 80538318 GCCxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 126 0 0 7.362553 0.105263 0.02 -0.333119 34 4 938 110 60 60 0 0 AA 18.94924 63 0 1748 0 KEEP + Thop1 YES AA_7 chr10 80735362 80735362 A T exonic Apba3 nonsynonymous SNV NM_018758:c.A1420T:p.I474F exonic Apba3 nonsynonymous SNV uc007ggz.2:c.A1420T:p.I474F exonic ENSMUSG00000004931 nonsynonymous SNV ENSMUST00000057798:c.A1420T:p.I474F 10qC1 NA NA chr10 80735362 AGTxTTA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970817 0.97082 0.999997 89 0 0 11.495745 0.115385 0.02 1.337634 46 6 1222 167 60 60 0 0 AA 8.419775 28 0 745 0 KEEP + Apba3 YES AA_7 chr10 80795855 80795855 T A exonic Tbxa2r nonsynonymous SNV NM_001277265:c.T632A:p.L211Q exonic Tbxa2r nonsynonymous SNV uc007ghh.1:c.T632A:p.L211Q exonic ENSMUSG00000034881 nonsynonymous SNV ENSMUST00000105325:c.T632A:p.L211Q 10qC1 NA NA chr10 80795855 TCCxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 150 0 0 8.786038 0.081967 0.02 1.160516 56 5 1552 139 60 60 0 0 TT 19.540854 65 0 1778 0 KEEP + Tbxa2r YES AA_7 chr10 81690257 81690257 G C intronic Zfp938 NA NA UTR5 B230315N10Rik NA NA UTR3 ENSMUSG00000062931 NA NA 10qC1 NA NA chr10 81690257 CCAxCTT G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 198 4 0 54.107562 0.32 0.02 1.038349 51 24 1426 631 60 60 0 0 GG 25.570998 85 0 2447 0 KEEP - Zfp938 NO AA_7 chr10 87902291 87902291 C A exonic Gnptab nonsynonymous SNV NM_001004164:c.C3368A:p.P1123H exonic Gnptab nonsynonymous SNV uc011xlg.1:c.C3230A:p.P1077H exonic ENSMUSG00000035311 nonsynonymous SNV ENSMUST00000099382:c.C3230A:p.P1077H 10qC1 NA NA chr10 87902291 ACCxCAG C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 74 0 0 21.309758 0.346154 0.02 -0.227987 17 9 477 243 60 60 0 0 CC 11.127506 37 0 1017 0 KEEP + Gnptab NO AA_7 chr10 90384111 90384111 A T exonic Anks1b unknown UNKNOWN exonic Anks1b nonsynonymous SNV uc007gtd.1:c.A155T:p.Q52L exonic ENSMUSG00000058589 nonsynonymous SNV ENSMUST00000164897:c.A365T:p.Q122L 10qC2 NA NA chr10 90384111 TCCxGTA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 145 0 0 11.643963 0.109091 0.02 1.213687 49 6 1342 170 60 60 0 0 AA 20.452815 68 0 1881 0 KEEP + Anks1b YES AA_7 chr10 9394299 9394299 T A intronic Samd5 NA NA intronic Samd5 NA NA intronic ENSMUSG00000060487 NA NA 10qA1 NA NA chr10 9394299 TCCxTAC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 228 2 0 33.573916 0.192771 0.02 0.958645 67 16 1894 436 60 60 0 0 TT 33.387465 111 0 3094 0 KEEP - Samd5 YES AA_7 chr11 100451302 100451302 A C exonic Dnajc7 nonsynonymous SNV NM_019795:c.T920G:p.L307R exonic Dnajc7 nonsynonymous SNV uc007lls.1:c.T920G:p.L307R exonic ENSMUSG00000014195 nonsynonymous SNV ENSMUST00000014339:c.T920G:p.L307R 11qD NA NA chr11 100451302 CTAxGCT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 91 0 0 19.581844 0.243902 0.02 -0.359487 31 10 889 247 60 60 0 0 AA 12.33295 41 0 1155 0 KEEP - Dnajc7 NO AA_7 chr11 102776142 102776142 T A exonic Kif18b nonsynonymous SNV NM_197959:c.A680T:p.H227L exonic Kif18b nonsynonymous SNV uc007lsy.2:c.A680T:p.H227L exonic ENSMUSG00000051378 nonsynonymous SNV ENSMUST00000021311:c.A680T:p.H227L 11qE1 NA NA chr11 102776142 GCAxGAG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 118 0 0 16.62851 0.153846 0.02 1.23929 44 8 1197 225 60 60 0 0 TT 13.062538 51 1 1365 21 KEEP - Kif18b YES AA_7 chr11 103475509 103475509 T G exonic Gm884 nonsynonymous SNV NM_001033434:c.A418C:p.T140P exonic Gm884 nonsynonymous SNV uc007lvk.1:c.A418C:p.T140P exonic ENSMUSG00000034239 nonsynonymous SNV ENSMUST00000059279:c.A6946C:p.T2316P 11qE1 NA NA chr11 103475509 GTGxATA T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 96 0 0 10.080019 0.116279 0.02 -0.376867 38 5 1004 144 60 60 0 0 TT 13.826979 46 0 1213 0 KEEP - Gm884 NO AA_7 chr11 113671747 113671747 T A exonic Sdk2 nonsynonymous SNV NM_172800:c.A5075T:p.K1692M exonic Sdk2 nonsynonymous SNV uc007mfd.1:c.A269T:p.K90M exonic ENSMUSG00000041592 nonsynonymous SNV ENSMUST00000170642:c.A269T:p.K90M 11qE2 NA NA chr11 113671747 TTCxTGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 111 0 0 13.227175 0.134615 0.02 1.239254 45 7 1254 188 60 60 0 0 TT 12.277752 41 0 1102 0 KEEP - Sdk2 YES AA_7 chr11 116221161 116221161 T A exonic Rnf157 nonsynonymous SNV NM_027258:c.A527T:p.H176L exonic Rnf157 nonsynonymous SNV uc007mky.2:c.A527T:p.H176L exonic ENSMUSG00000052949 nonsynonymous SNV ENSMUST00000100202:c.A527T:p.H176L 11qE2 NA NA chr11 116221161 GTAxGGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 113 0 0 9.905079 0.128205 0.02 -0.341971 34 5 933 140 60 60 0 0 TT 17.107492 57 0 1478 0 KEEP - Rnf157 YES AA_7 chr11 116713408 116713408 G A exonic Srsf2 synonymous SNV NM_011358:c.C600T:p.S200S exonic Srsf2 synonymous SNV uc007mmn.2:c.C600T:p.S200S exonic ENSMUSG00000034120 nonsynonymous SNV ENSMUST00000092403:c.C731T:p.P244L 11qE2 NA NA chr11 116713408 CTTxGAC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 212 0 0 9.563917 0.070588 0.02 0.754807 79 6 2228 161 60 60 0 0 GG 32.779057 109 0 3103 0 KEEP - Srsf2 NO AA_7 chr11 119403877 119403877 A T exonic Nptx1 synonymous SNV NM_008730:c.T1209A:p.S403S exonic Nptx1 synonymous SNV uc007mqv.1:c.T1209A:p.S403S exonic ENSMUSG00000025582 synonymous SNV ENSMUST00000026670:c.T1209A:p.S403S 11qE2 NA NA chr11 119403877 GCCxGAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 93 0 0 7.578285 0.095238 0.02 -0.368312 38 4 1071 114 60 60 0 0 AA 12.030157 40 0 1096 0 KEEP - Nptx1 YES AA_7 chr11 119966495 119966495 T A exonic Slc38a10 nonsynonymous SNV NM_001164799:c.A3065T:p.H1022L exonic Slc38a10 nonsynonymous SNV uc007mrw.2:c.A3065T:p.H1022L exonic ENSMUSG00000061306 nonsynonymous SNV ENSMUST00000045402:c.A3065T:p.H1022L 11qE2 NA NA chr11 119966495 GGAxGAG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 89 0 0 15.137767 0.212121 0.02 -0.289312 26 7 698 192 60 60 0 0 TT 13.791059 46 0 1195 0 KEEP - Slc38a10 YES AA_7 chr11 121290962 121290962 T A exonic Fn3krp nonsynonymous SNV NM_181420:c.T818A:p.F273Y exonic Fn3krp nonsynonymous SNV uc007mvv.2:c.T818A:p.F273Y exonic ENSMUSG00000039253 nonsynonymous SNV ENSMUST00000038096:c.T818A:p.F273Y 11qE2 NA NA chr11 121290962 GATxTGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 100 0 0 11.725582 0.15 0.02 -0.350754 34 6 946 162 60 60 0 0 TT 14.102911 47 0 1292 0 KEEP + Fn3krp YES AA_7 chr11 34627067 34627067 T G exonic Spdl1 synonymous SNV NM_027411:c.A1440C:p.G480G exonic Ccdc99 synonymous SNV uc007ilc.2:c.A1440C:p.G480G exonic ENSMUSG00000069910 synonymous SNV ENSMUST00000093191:c.A1440C:p.G480G 11qA4 NA NA chr11 34627067 AACxCCA T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 133 0 0 24.864349 0.276596 0.02 -0.420786 34 13 968 307 60 60 0 0 TT 19.551735 65 0 1823 0 KEEP - Spdl1 NO AA_7 chr11 3584633 3584633 A G exonic Morc2a nonsynonymous SNV NM_198162:c.A2018G:p.K673R exonic Morc2a nonsynonymous SNV uc007htn.1:c.A2018G:p.K673R exonic ENSMUSG00000034543 nonsynonymous SNV ENSMUST00000096441:c.A2204G:p.K735R 11qA1 NA NA chr11 3584633 GGAxGCG A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 84 0 0 7.414457 0.102564 0.02 -0.341966 35 4 981 111 60 60 0 0 AA 11.126727 37 0 1003 0 KEEP + Morc2a NO AA_7 chr11 48565647 48565647 T A intergenic "Sgcd(dist=1372843),Gnb2l1(dist=48215)" NA NA intergenic "Sgcd(dist=763176),Gnb2l1(dist=48215)" NA NA ncRNA_exonic ENSMUSG00000082454 NA NA 11qB1.2 NA NA chr11 48565647 CTCxCTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 143 3 2 8.740097 0.087719 0.02 1.195637 52 5 1455 137 60 60 0 0 TT 18.737269 65 1 1824 7 KEEP NA Sgcd YES AA_7 chr11 51418298 51418298 T G exonic Hnrnpab synonymous SNV NM_001048061:c.A415C:p.R139R exonic Hnrnpab synonymous SNV uc007itz.1:c.A415C:p.R139R exonic ENSMUSG00000020358 synonymous SNV ENSMUST00000074669:c.A415C:p.R139R 11qB1.3 NA NA chr11 51418298 GCCxGTG T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 125 0 0 12.964506 0.116667 0.02 1.071199 53 7 1496 190 60 60 0 0 TT 15.94065 53 0 1457 0 KEEP - Hnrnpab NO AA_7 chr11 52977886 52977886 T A intronic Fstl4 NA NA ncRNA_intronic mKIAA1061 NA NA intronic ENSMUSG00000036264 NA NA 11qB1.3 NA NA chr11 52977886 TGCxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 231 4 0 14.592541 0.098765 0.02 0.984924 73 8 2056 221 60 60 0 0 TT 33.982805 113 0 3105 0 KEEP + Fstl4 YES AA_7 chr11 53793007 53793007 T G exonic Slc22a21 nonsynonymous SNV NM_019723:c.A353C:p.E118A exonic Slc22a21 nonsynonymous SNV uc007ixd.1:c.A353C:p.E118A exonic ENSMUSG00000063652 nonsynonymous SNV ENSMUST00000076493:c.A353C:p.E118A 11qB1.3 NA NA chr11 53793007 TACxCCC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 418 0 0 14.405524 0.083333 0.02 2.938563 143 13 4046 273 60 60 0 0 TT 64.638925 215 0 5928 0 KEEP - Slc22a21 NO AA_7 chr11 54730458 54730458 T A exonic Tnip1 nonsynonymous SNV NM_001199276:c.A1499T:p.H500L exonic Tnip1 nonsynonymous SNV uc007iyn.2:c.A1499T:p.H500L exonic ENSMUSG00000020400 nonsynonymous SNV ENSMUST00000101203:c.A1442T:p.H481L 11qB1.3 NA NA chr11 54730458 GGGxGGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 91 0 0 9.098598 0.121951 0.02 -0.359285 36 5 955 133 60 60 0 0 TT 11.399572 38 0 984 0 KEEP - Tnip1 YES AA_7 chr11 55096212 55096212 T A exonic Fat2 synonymous SNV NM_001029988:c.A7176T:p.A2392A exonic Fat2 synonymous SNV uc007izf.1:c.A7176T:p.A2392A exonic ENSMUSG00000055333 synonymous SNV ENSMUST00000108864:c.A7176T:p.A2392A 11qB1.3 NA NA chr11 55096212 GGTxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 125 0 0 22.622309 0.169231 0.02 1.125276 54 11 1507 302 60 60 0 0 TT 14.135357 47 0 1287 0 KEEP - Fat2 YES AA_7 chr11 5532088 5532088 T C intronic Ankrd36 NA NA intronic Ankrd36 NA NA intronic ENSMUSG00000020481 NA NA 11qA1 NA NA chr11 5532088 TGTxCTT T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 39 0 0 11.867398 0.277778 0.02 -0.15785 13 5 369 141 60 60 0 0 TT 5.715002 19 0 529 0 KEEP + Ankrd36 NO AA_7 chr11 58394870 58394870 T G exonic Olfr325 nonsynonymous SNV NM_207153:c.T523G:p.S175A exonic Olfr325 nonsynonymous SNV uc007jbu.2:c.T523G:p.S175A exonic ENSMUSG00000060765 nonsynonymous SNV ENSMUST00000076902:c.T523G:p.S175A 11qB1.3 "Score=0.956038;Name=No.12975,chr11:58342560" NA chr11 58394870 GGAxCCC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 324 5 38 16.233651 0.076923 0.02 2.27703 108 9 2979 257 60 60 0 0 TT 45.050747 150 0 4016 0 KEEP + Olfr325 NO AA_7 chr11 58877086 58877086 T A exonic Obscn nonsynonymous SNV NM_001171512:c.A11171T:p.E3724V exonic Obscn nonsynonymous SNV uc007jdb.2:c.A11171T:p.E3724V exonic ENSMUSG00000061462 nonsynonymous SNV ENSMUST00000047441:c.A11171T:p.E3724V 11qB1.3 NA NA chr11 58877086 CACxCCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 251 1 0 14.224653 0.108108 0.02 0.93984 66 8 1837 214 60 60 0 0 TT 41.467515 138 0 3769 0 KEEP - Obscn YES AA_7 chr11 59104112 59104112 A T exonic Wnt3a nonsynonymous SNV NM_009522:c.T38A:p.L13Q exonic Wnt3a nonsynonymous SNV uc007jdp.2:c.T38A:p.L13Q exonic ENSMUSG00000009900 nonsynonymous SNV ENSMUST00000010044:c.T38A:p.L13Q 11qB1.3 NA NA chr11 59104112 TTCxGGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 135 0 0 7.468001 0.1 0.02 -0.350702 36 4 993 112 60 60 0 0 AA 21.650999 72 0 1992 0 KEEP - Wnt3a YES AA_7 chr11 60976496 60976496 G C exonic Usp22 nonsynonymous SNV NM_001004143:c.C523G:p.L175V exonic Usp22 nonsynonymous SNV uc007jhc.2:c.C523G:p.L175V exonic ENSMUSG00000042506 nonsynonymous SNV ENSMUST00000041683:c.C523G:p.L175V 11qB2 NA NA chr11 60976496 GCAxACC G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 97 0 0 6.527471 0.097561 0.02 -0.359541 37 4 1057 103 60 60 0 0 GG 13.534571 45 0 1262 0 KEEP - Usp22 NO AA_7 chr11 61523143 61523143 T A exonic Slc5a10 nonsynonymous SNV NM_001033227:c.A509T:p.Y170F exonic Slc5a10 nonsynonymous SNV uc007jia.1:c.A509T:p.Y170F exonic ENSMUSG00000042371 nonsynonymous SNV ENSMUST00000148584:c.A509T:p.Y170F 11qB2 NA NA chr11 61523143 AGGxAGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 106 0 0 7.822038 0.097561 0.02 -0.359456 37 4 987 116 60 60 0 0 TT 12.925452 43 0 1116 0 KEEP - Slc5a10 YES AA_7 chr11 62567033 62567033 T A intergenic "Zfp287(dist=24438),Zfp286(dist=24856)" NA NA intergenic "Zfp287(dist=21626),AK019541(dist=3647)" NA NA UTR3 ENSMUSG00000072843 NA NA 11qB2 NA NA chr11 62567033 TCTxCAT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 321 1 0 25.132594 0.101449 0.02 2.082445 124 14 3493 381 60 60 0 0 TT 42.092321 140 0 3876 0 KEEP NA Zfp287 YES AA_7 chr11 66905508 66905508 G A exonic Myh3 nonsynonymous SNV NM_001099635:c.G2550A:p.M850I exonic Myh3 nonsynonymous SNV uc007jlx.1:c.G2550A:p.M850I exonic ENSMUSG00000020908 nonsynonymous SNV ENSMUST00000007301:c.G2550A:p.M850I 11qB3 NA NA chr11 66905508 GATxGCC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.979526 0.979526 1 144 0 0 10.99222 0.107143 0.02 1.106385 50 6 1391 164 60 60 0 0 GG 20.748847 69 0 1947 0 KEEP + Myh3 NO AA_7 chr11 70731277 70731277 A T exonic Rabep1 nonsynonymous SNV NM_019400:c.A1556T:p.Q519L exonic Rabep1 nonsynonymous SNV uc007jwu.1:c.A410T:p.Q137L exonic ENSMUSG00000020817 nonsynonymous SNV ENSMUST00000142220:c.A461T:p.Q154L 11qB4 NA NA chr11 70731277 TGCxGAA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 87 0 0 10.782528 0.178571 0.02 -0.245554 23 5 659 141 60 60 0 0 AA 13.535212 45 0 1254 0 KEEP + Rabep1 YES AA_7 chr11 73701705 73701705 T A exonic Olfr394 synonymous SNV NM_147007:c.A168T:p.P56P exonic Olfr394 synonymous SNV uc007kbe.1:c.A168T:p.P56P exonic ENSMUSG00000056921 synonymous SNV ENSMUST00000071478:c.A168T:p.P56P 11qB4 NA NA chr11 73701705 CATxGGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999218 0.999218 1 244 0 0 13.244393 0.0875 0.02 1.092412 73 7 2025 202 60 60 0 0 TT 36.677171 122 0 3335 0 KEEP - Olfr394 YES AA_7 chr11 73778277 73778277 C G exonic Olfr397 nonsynonymous SNV NM_146346:c.C166G:p.H56D exonic Olfr397 nonsynonymous SNV uc007kbh.1:c.C166G:p.H56D exonic ENSMUSG00000057050 nonsynonymous SNV ENSMUST00000108465:c.C166G:p.H56D 11qB4 NA NA chr11 73778277 CTCxACA C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 558 3 0 43.781118 0.129534 0.02 3.393449 168 25 4712 641 60 60 0 0 CC 87.81538 292 0 8226 0 KEEP + Olfr397 NO AA_7 chr11 74148538 74148538 A T exonic Olfr410 nonsynonymous SNV NM_146707:c.T194A:p.F65Y exonic Olfr410 nonsynonymous SNV uc007kbs.1:c.T194A:p.F65Y exonic ENSMUSG00000063116 nonsynonymous SNV ENSMUST00000080365:c.T194A:p.F65Y 11qB5 NA NA chr11 74148538 AGGxAGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 262 2 0 13.08972 0.074766 0.02 2.061911 99 8 2788 216 60 60 0 0 AA 37.89838 126 0 3495 0 KEEP - Olfr410 YES AA_7 chr11 75483320 75483320 G C exonic Myo1c nonsynonymous SNV NM_001080774:c.G2145C:p.W715C exonic Myo1c nonsynonymous SNV uc007kem.1:c.G2145C:p.W715C exonic ENSMUSG00000017774 nonsynonymous SNV ENSMUST00000057572:c.G2250C:p.W750C 11qB5 NA NA chr11 75483320 TTGxCGA G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 166 0 0 13.114637 0.101449 0.02 1.081412 62 7 1727 196 60 60 0 0 GG 21.654789 72 0 1981 0 KEEP + Myo1c NO AA_7 chr11 75692458 75692458 T A exonic Rph3al nonsynonymous SNV NM_029548:c.A431T:p.Q144L exonic Rph3al nonsynonymous SNV uc007kew.1:c.A431T:p.Q144L exonic ENSMUSG00000020847 nonsynonymous SNV ENSMUST00000066504:c.A431T:p.Q144L 11qB5 NA NA chr11 75692458 CTCxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 170 0 0 16.657953 0.098901 0.02 0.89727 82 9 2321 251 60 60 0 0 TT 18.034844 60 0 1648 0 KEEP - Rph3al YES AA_7 chr11 87589792 87589792 A G exonic Bzrap1 nonsynonymous SNV NM_172449:c.A3387G:p.I1129M exonic Bzrap1 nonsynonymous SNV uc007kum.2:c.A3387G:p.I1129M exonic ENSMUSG00000034156 nonsynonymous SNV ENSMUST00000100644:c.A3207G:p.I1069M 11qC NA NA chr11 87589792 CATxGAG A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 328 0 0 19.013035 0.088 0.02 2.590483 114 11 3127 298 60 60 0 0 AA 43.905036 146 0 4016 0 KEEP + Bzrap1 NO AA_7 chr11 8784636 8784636 A T intergenic "Tns3(dist=220098),Hus1(dist=108509)" NA NA intergenic "Pkd1l1(dist=12753),Hus1(dist=108509)" NA NA ncRNA_exonic ENSMUSG00000082095 NA NA 11qA1 "Score=0.985574;Name=No.14794,chr3:54285335" NA chr11 8784636 AAGxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 244 1 0 14.44901 0.089888 0.02 0.90605 81 8 2242 223 60 60 0 0 AA 38.796675 129 0 3525 0 KEEP NA Tns3 YES AA_7 chr11 94918421 94918421 A T exonic Itga3 synonymous SNV NM_013565:c.T1902A:p.S634S exonic Itga3 synonymous SNV uc007kzv.1:c.T1809A:p.S603S exonic ENSMUSG00000001507 synonymous SNV ENSMUST00000107739:c.T1809A:p.S603S 11qD NA NA chr11 94918421 CTCxGAC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 83 0 0 10.423731 0.147059 0.02 -0.298165 29 5 823 142 60 60 0 0 AA 12.327275 41 0 1107 0 KEEP - Itga3 YES AA_7 chr11 97739344 97739344 T A exonic Fbxo47 synonymous SNV NM_001081435:c.A279T:p.L93L exonic Fbxo47 synonymous SNV uc007lfb.1:c.A279T:p.L93L exonic ENSMUSG00000070336 synonymous SNV ENSMUST00000093939:c.A279T:p.L93L 11qD NA NA chr11 97739344 CTGxAGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 89 1 0 11.624271 0.139535 0.02 -0.376996 37 6 990 163 60 60 0 0 TT 10.523112 35 0 919 0 KEEP - Fbxo47 YES AA_7 chr11 97959810 97959810 T A splicing Fbxl20(NM_028149:exon10:c.622-2A>T) NA NA splicing "Fbxl20(uc007lfm.1:exon10:c.622-2A>T,uc009vah.1:exon10:c.628-2A>T)" NA NA splicing "ENSMUSG00000020883(ENSMUST00000075071:exon11:c.622-2A>T,ENSMUST00000103143:exon10:c.622-2A>T,ENSMUST00000147971:exon3:c.82-2A>T,ENSMUST00000150378:exon9:c.559-2A>T)" NA NA 11qD NA NA chr11 97959810 AGCxGCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865735 0.865745 0.999988 72 0 0 10.204192 0.128205 0.02 -0.342002 34 5 953 143 60 60 0 0 TT 8.120563 27 0 740 0 KEEP - Fbxl20 YES AA_7 chr11 99654690 99654690 C A upstream Gm11596 NA NA upstream Gm11596 NA NA UTR5 ENSMUSG00000078261 NA NA 11qD "Score=0.943454;Name=No.13042,chr11:99665125" NA chr11 99654690 TCCxCTT C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 173 0 0 6.901886 0.081633 0.02 -0.438425 45 4 1263 110 60 60 0 0 CC 32.737469 109 0 2996 0 KEEP NA Gm11596 NO AA_7 chr11 99872939 99872939 A T exonic Krt33a stopgain SNV NM_027983:c.T1188A:p.C396X exonic Krt33a stopgain SNV uc007lka.2:c.T1188A:p.C396X exonic ENSMUSG00000035592 stopgain SNV ENSMUST00000018399:c.T1188A:p.C396X 11qD NA NA chr11 99872939 TCCxCAT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999968 0.999968 1 313 2 0 10.295429 0.059406 0.02 2.504925 95 6 2580 173 60 60 0 0 AA 49.315519 164 0 4408 0 KEEP - Krt33a YES AA_7 chr11 99890962 99890962 T A exonic Krt33b nonsynonymous SNV NM_013570:c.A178T:p.M60L exonic Krt33b nonsynonymous SNV uc007lkb.2:c.A178T:p.M60L exonic ENSMUSG00000057723 nonsynonymous SNV ENSMUST00000073890:c.A178T:p.M60L 11qD NA NA chr11 99890962 GCAxGGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 93 0 0 7.612959 0.086957 0.02 -0.403351 42 4 1153 116 60 57 0 0 TT 11.728354 39 0 1049 0 KEEP - Krt33b YES AA_7 chr12 104350306 104350306 A T exonic Unc79 nonsynonymous SNV NM_001081017:c.A4462T:p.S1488C exonic Unc79 nonsynonymous SNV uc007oux.2:c.A3931T:p.S1311C exonic ENSMUSG00000021198 nonsynonymous SNV ENSMUST00000085079:c.A3931T:p.S1311C 12qE NA NA chr12 104350306 GAAxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 49 0 0 7.91593 0.166667 0.02 -0.210431 20 4 561 107 60 60 0 0 AA 6.917961 23 0 637 0 KEEP + Unc79 YES AA_7 chr12 104681640 104681640 T C intronic Ifi27l2a NA NA intronic Ifi27l2a NA NA intronic "ENSMUSG00000021208,ENSMUSG00000079017" NA NA 12qE NA NA chr12 104681640 CCAxCTA T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 74 0 0 9.894894 0.151515 0.02 -0.289354 28 5 764 136 60 60 0 0 TT 10.525906 35 0 948 0 KEEP - Ifi27l2a NO AA_7 chr12 105377003 105377003 T C exonic Serpina3b synonymous SNV NM_173024:c.T1227C:p.H409H exonic Serpina3b synonymous SNV uc007owu.1:c.T1227C:p.H409H exonic ENSMUSG00000066364 synonymous SNV ENSMUST00000085052:c.T1227C:p.H409H 12qE NA NA chr12 105377003 CCAxGTA T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780976 0.78106 0.999892 66 0 0 24.232717 0.352941 0.02 -0.29798 22 12 598 281 60 60 0 0 TT 6.917302 23 0 626 0 KEEP + Serpina3b NO AA_7 chr12 109591109 109591109 T A exonic Cyp46a1 synonymous SNV NM_010010:c.T819A:p.A273A exonic Cyp46a1 synonymous SNV uc007ozo.1:c.T819A:p.A273A exonic ENSMUSG00000021259 synonymous SNV ENSMUST00000021684:c.T819A:p.A273A 12qF1 NA NA chr12 109591109 GGCxGAC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 86 0 0 9.339507 0.119048 0.02 -0.367581 37 5 1026 136 60 60 0 0 TT 11.414938 38 0 1003 0 KEEP + Cyp46a1 YES AA_7 chr12 111518095 111518095 G A exonic Dio3 unknown UNKNOWN exonic Dio3 unknown UNKNOWN exonic ENSMUSG00000075707 unknown UNKNOWN 12qF1 NA NA chr12 111518095 CCAxCAC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 151 0 0 8.794441 0.078947 0.02 0.931275 70 6 1917 150 60 60 0 0 GG 19.55005 65 0 1820 0 KEEP + Dio3 NO AA_7 chr12 113359096 113359096 C T exonic Aspg synonymous SNV NM_001081169:c.C774T:p.P258P exonic Aspg synonymous SNV uc007pek.1:c.C774T:p.P258P exonic ENSMUSG00000037686 synonymous SNV ENSMUST00000079400:c.C774T:p.P258P 12qF1 NA NA chr12 113359096 GCCxCCA C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999998 89 2 0 11.076375 0.146341 0.02 -0.357879 35 6 898 156 60 60 0 0 CC 10.225284 34 0 938 0 KEEP + Aspg NO AA_7 chr12 114510483 114510483 T A intergenic "Tmem121(dist=82750),Adam6b(dist=217293)" NA NA exonic J00476 nonsynonymous SNV uc011yvk.1:c.A304T:p.T102S exonic "ENSMUSG00000076611,ENSMUSG00000087642" nonsynonymous SNV ENSMUST00000103414:c.A334T:p.T112S 12qF1 NA NA chr12 114510483 GTGxATC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990962 0.990964 0.999998 105 0 0 11.312533 0.096774 0.02 1.151753 56 6 1499 170 60 60 0 0 TT 9.919924 33 0 878 0 KEEP - Tmem121 YES AA_7 chr12 114598714 114598714 T A intergenic "Tmem121(dist=170981),Adam6b(dist=129062)" NA NA ncRNA_intronic abParts NA NA intronic ENSMUSG00000076615 NA NA 12qF1 NA NA chr12 114598714 TTCxGGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 237 2 0 16.550348 0.087379 0.02 2.487182 94 9 2672 255 60 60 0 0 TT 32.483707 108 0 2988 0 KEEP - Tmem121 YES AA_7 chr12 115978932 115978932 A G intergenic "Adam6a(dist=1194307),Zfp386(dist=1307003)" NA NA ncRNA_intronic "X73024,abParts" NA NA intergenic "ENSMUSG00000076697(dist=16516),ENSMUSG00000076698(dist=5552)" NA NA 12qF2 "Score=0.94022;Name=No.26278,chr12:116081274" NA chr12 115978932 AAGxGAA A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 421 31 39 31.962092 0.10559 0.02 3.65714 144 17 4072 474 60 60 0 0 AA 65.217129 217 0 6009 0 KEEP - Adam6a NO AA_7 chr12 116480985 116480985 A T intergenic "Adam6a(dist=1696360),Zfp386(dist=804950)" NA NA ncRNA_intronic abParts NA NA downstream ENSMUSG00000076718 NA NA 12qF2 "Score=0.954175;Name=No.26322,chr12:116620575" NA chr12 116480985 GACxCAC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 301 2 0 17.151402 0.093458 0.02 2.4532 97 10 2675 266 60 60 0 0 AA 48.717266 162 0 4387 0 KEEP - Adam6a YES AA_7 chr12 116610457 116610457 A T intergenic "Adam6a(dist=1825832),Zfp386(dist=675478)" NA NA ncRNA_exonic abParts NA NA intergenic "ENSMUSG00000076722(dist=12674),ENSMUSG00000090959(dist=14653)" NA NA 12qF2 "Score=0.968205;Name=No.26294,chr12:116304914" NA chr12 116610457 CACxAGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 389 23 18 22.561716 0.076023 0.02 3.586204 158 13 4408 363 60 60 0 0 AC 46.917096 156 0 4267 0 KEEP - Adam6a YES AA_7 chr12 117678483 117678483 T A exonic Ncapg2 synonymous SNV NM_133762:c.T2541A:p.S847S exonic Ncapg2 synonymous SNV uc007pht.1:c.T2541A:p.S847S exonic ENSMUSG00000042029 synonymous SNV ENSMUST00000084828:c.T2541A:p.S847S 12qF2 NA NA chr12 117678483 GTCxTGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 66 0 0 23.857347 0.344828 0.02 -0.254294 19 10 532 272 60 60 0 0 TT 9.023535 30 0 835 0 KEEP + Ncapg2 YES AA_7 chr12 119210855 119210855 A T exonic Dnah11 stopgain SNV NM_010060:c.T9875A:p.L3292X exonic Dnahc11 stopgain SNV uc007pie.1:c.T9875A:p.L3292X exonic ENSMUSG00000018581 stopgain SNV ENSMUST00000084806:c.T9875A:p.L3292X 12qF2 NA NA chr12 119210855 GCCxATG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 164 1 0 12.716005 0.101449 0.02 1.081424 62 7 1723 192 60 60 0 0 AA 17.745161 59 0 1623 0 KEEP - Dnah11 YES AA_7 chr12 27826853 27826853 A T ncRNA_exonic Gm9866 NA NA ncRNA_exonic "AK044503,AK163447" NA NA exonic ENSMUSG00000052076 stopgain SNV ENSMUST00000063754:c.T399A:p.C133X 12qA2 NA NA chr12 27826853 AACxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 143 0 0 11.157443 0.098361 0.02 1.099102 55 6 1484 168 60 60 0 0 AA 18.645672 62 0 1675 0 KEEP - Gm9866 YES AA_7 chr12 3199436 3199436 T A intergenic "NONE(dist=NONE),1700012B15Rik(dist=36355)" NA NA intergenic "NONE(dist=NONE),1700012B15Rik(dist=36090)" NA NA intergenic "ENSMUSG00000092168(dist=112395),ENSMUSG00000079179(dist=37175)" NA NA 12qA1.1 "Score=0.963895;Name=No.27572,chr17:3193971" NA chr12 3199436 TCCxTCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 92 0 3 19.620329 0.214286 0.02 -0.368306 33 9 930 248 60 60 0 0 TT 12.029493 40 0 1104 0 KEEP NA NONE YES AA_7 chr12 3309330 3309330 G A exonic Rab10 nonsynonymous SNV NM_016676:c.C89T:p.S30L exonic Rab10 nonsynonymous SNV uc007mwl.2:c.C89T:p.S30L exonic ENSMUSG00000020671 nonsynonymous SNV ENSMUST00000021001:c.C89T:p.S30L 12qA1.1 NA NA chr12 3309330 TCCxAAA G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 134 0 0 35.646991 0.294118 0.02 1.248322 36 15 879 419 60 60 0 0 GG 20.117671 67 0 1632 0 KEEP - Rab10 NO AA_7 chr12 42179609 42179609 A T exonic Lrrn3 nonsynonymous SNV NM_001271709:c.T1295A:p.L432Q exonic Lrrn3 nonsynonymous SNV uc007nln.1:c.T1295A:p.L432Q exonic ENSMUSG00000036295 nonsynonymous SNV ENSMUST00000043884:c.T1295A:p.L432Q 12qB1 NA NA chr12 42179609 TCCxGGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.712749 0.717315 0.993634 44 0 0 7.935772 0.129032 0.02 -0.271841 27 4 757 112 60 60 0 0 AA 3.608976 12 0 326 0 KEEP + Lrrn3 YES AA_7 chr12 54741443 54741443 A T intronic Npas3 NA NA exonic Npas3 nonsynonymous SNV uc007nnp.1:c.A319T:p.I107L exonic ENSMUSG00000021010 nonsynonymous SNV ENSMUST00000021396:c.A319T:p.I107L 12qC1 NA NA chr12 54741443 GTTxTAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.87767 0.877708 0.999957 78 0 0 7.567666 0.1 0.02 -0.350712 36 4 966 113 60 60 0 0 AA 7.818052 26 0 688 0 KEEP + Npas3 YES AA_7 chr12 55529483 55529483 T A intergenic "Gm7550(dist=37178),Sptssa(dist=216878)" NA NA intergenic "Gm7550(dist=37178),1110002B05Rik(dist=216878)" NA NA ncRNA_exonic ENSMUSG00000071329 NA NA 12qC1 NA NA chr12 55529483 CTTxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 541 1 0 31.680198 0.121212 0.02 2.232946 116 16 3230 452 60 60 0 0 TT 101.036582 336 0 9177 0 KEEP NA Gm7550 YES AA_7 chr12 66022262 66022262 A C exonic Gm527 nonsynonymous SNV NM_001025605:c.A470C:p.N157T exonic Gm527 nonsynonymous SNV uc007nqo.1:c.A470C:p.N157T exonic ENSMUSG00000047227 nonsynonymous SNV ENSMUST00000058135:c.A470C:p.N157T 12qC1 NA NA chr12 66022262 CTAxCTG A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 185 0 0 10.523443 0.086957 0.02 1.090331 63 6 1718 165 60 60 0 0 AA 26.768896 89 0 2457 0 KEEP + Gm527 NO AA_7 chr12 72085657 72085657 A T splicing Psma3(NM_011184:exon5:c.331-2A>T) NA NA splicing "Psma3(uc007ntz.2:exon5:c.331-2A>T,uc007nua.2:exon5:c.106-2A>T)" NA NA splicing "ENSMUSG00000060073(ENSMUST00000160027:exon5:c.331-2A>T,ENSMUST00000162626:exon5:c.355-2A>T,ENSMUST00000160864:exon4:c.248-2A>T,ENSMUST00000071704:exon5:c.326-2A>T)" NA NA 12qC3 NA NA chr12 72085657 CCCxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 565 0 0 47.58972 0.123077 0.02 3.375789 171 24 4833 677 60 60 0 0 AA 83.904942 279 0 7700 0 KEEP + Psma3 YES AA_7 chr12 85119451 85119451 A T exonic Papln nonsynonymous SNV NM_130887:c.A1649T:p.D550V exonic Papln nonsynonymous SNV uc007odt.1:c.A59T:p.D20V exonic ENSMUSG00000021223 nonsynonymous SNV ENSMUST00000021646:c.A1649T:p.D550V 12qD1 NA NA chr12 85119451 AGGxCCC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 95 0 0 7.760716 0.111111 0.02 -0.315599 32 4 886 113 60 60 0 0 AA 12.922958 43 0 1147 0 KEEP + Papln YES AA_7 chr12 88077423 88077423 T A exonic Gm6772 nonsynonymous SNV NM_001195767:c.T91A:p.Y31N exonic Gm6772 nonsynonymous SNV uc011ypk.1:c.T91A:p.Y31N exonic ENSMUSG00000059114 nonsynonymous SNV ENSMUST00000095527:c.T58A:p.Y20N 12qD2 NA NA chr12 88077423 CTCxACT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 107 0 0 9.38064 0.102041 0.02 -0.429678 44 5 1226 140 60 60 0 0 TT 13.533858 45 0 1233 0 KEEP + Gm6772 YES AA_7 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 272 7 93 12.217002 0.081395 0.02 0.834411 79 7 2235 194 55 29 0 0 CC 42.407478 141 0 3985 0 KEEP - Gm2042 NO AA_7 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 343 8 91 26.554072 0.145455 0.02 2.035631 94 16 2568 387 60 37 0 0 TT 52.605102 175 0 4658 0 KEEP - Gm2042 NO AA_7 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 331 7 38 33.003749 0.146789 0.02 2.303173 93 16 2552 451 60 37 0 0 TT 54.737132 182 0 4974 0 KEEP - Gm2042 NO AA_7 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 112 2 1 16.452856 0.163265 0.02 -0.438423 41 8 1132 221 60 60 0 0 CC 13.23384 44 0 1211 0 KEEP - Gm2042 NO AA_7 chr12 91442997 91442997 A T exonic Nrxn3 synonymous SNV NM_001252074:c.A732T:p.G244G exonic Nrxn3 synonymous SNV uc007oke.1:c.A732T:p.G244G exonic ENSMUSG00000066392 synonymous SNV ENSMUST00000110133:c.A642T:p.G214G 12qD3 NA NA chr12 91442997 CGGxGGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 241 1 0 7.547942 0.053763 0.02 0.781792 88 5 2511 136 60 60 0 0 AA 31.279187 104 0 2892 0 KEEP + Nrxn3 YES AA_7 chr13 101199096 101199096 T A intronic Naip1 NA NA intronic "Naip1,Naip5" NA NA intronic ENSMUSG00000021640 NA NA 13qD1 "Score=0.900692;Name=No.34880,chr13:100930003" NA chr13 101199096 TGCxGAA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 161 0 0 11.013139 0.096774 0.02 1.151672 56 6 1576 167 60 60 0 0 TT 23.151696 77 0 2121 0 KEEP - Naip1 YES AA_7 chr13 103527610 103527610 G A exonic Mast4 nonsynonymous SNV NM_175171:c.C5329T:p.P1777S exonic Mast4 nonsynonymous SNV uc007rsb.2:c.C5329T:p.P1777S exonic ENSMUSG00000034751 nonsynonymous SNV ENSMUST00000171791:c.C4753T:p.P1585S 13qD1 NA NA chr13 103527610 CAGxGGA G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 154 0 0 13.29072 0.094595 0.02 1.144657 67 7 1862 200 60 60 0 0 GG 18.645591 62 0 1705 0 KEEP - Mast4 NO AA_7 chr13 105218987 105218987 A T exonic Adamts6 nonsynonymous SNV NM_001081020:c.A2140T:p.S714C exonic Adamts6 nonsynonymous SNV uc007rti.1:c.A2140T:p.S714C exonic ENSMUSG00000046169 nonsynonymous SNV ENSMUST00000065766:c.A2140T:p.S714C 13qD1 NA NA chr13 105218987 GGAxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 60 0 0 8.595664 0.173913 0.02 -0.201701 19 4 541 113 60 60 0 0 AA 9.625843 32 0 902 0 KEEP + Adamts6 YES AA_7 chr13 106238092 106238092 A T UTR3 Htr1a NA NA UTR3 Htr1a NA NA UTR3 ENSMUSG00000021721 NA NA 13qD1 NA NA chr13 106238092 AATxCTT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 61 0 0 14.166061 0.230769 0.02 -0.227911 20 6 521 174 60 60 0 0 AA 8.419144 28 0 741 0 KEEP + Htr1a YES AA_7 chr13 21665823 21665823 A T exonic Olfr1364 synonymous SNV NM_146540:c.T501A:p.P167P exonic Olfr1364 synonymous SNV uc007pqu.1:c.T501A:p.P167P exonic ENSMUSG00000046016 synonymous SNV ENSMUST00000057453:c.T501A:p.P167P 13qA3.1 NA NA chr13 21665823 CACxGGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 56 0 0 8.980279 0.181818 0.02 -0.192933 18 4 511 116 60 60 0 0 AA 8.71011 29 0 779 0 KEEP - Olfr1364 YES AA_7 chr13 22919588 22919588 T A exonic Vmn1r210 synonymous SNV NM_134235:c.A396T:p.S132S exonic Vmn1r210 synonymous SNV uc007pta.1:c.A396T:p.S132S exonic ENSMUSG00000061296 synonymous SNV ENSMUST00000072044:c.A396T:p.S132S 13qA3.1 "Score=0.915304;Name=No.32686,chr13:22853987" NA chr13 22919588 GAAxGAG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 250 0 0 10.188691 0.06383 0.02 0.871006 88 6 2402 170 60 60 0 0 TT 41.501238 138 0 3721 0 KEEP - Vmn1r210 YES AA_7 chr13 29644200 29644200 T A exonic Cdkal1 synonymous SNV NM_144536:c.A804T:p.T268T exonic Cdkal1 synonymous SNV uc007pyn.1:c.A804T:p.T268T exonic ENSMUSG00000006191 synonymous SNV ENSMUST00000006353:c.A804T:p.T268T 13qA3.2 NA NA chr13 29644200 ATCxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 76 0 0 15.341492 0.194444 0.02 -0.315701 29 7 824 197 60 60 0 0 TT 10.226268 34 0 939 0 KEEP - Cdkal1 YES AA_7 chr13 33586741 33586741 A T intronic Serpinb9g NA NA intronic Serpinb9g NA NA intronic ENSMUSG00000057726 NA NA 13qA3.3 "Score=0.972254;Name=No.32712,chr13:33487241" NA chr13 33586741 TTTxAGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 119 0 0 8.738541 0.1 0.02 1.150405 45 5 1144 134 60 48 0 0 AA 14.076055 51 2 1243 10 KEEP + Serpinb9g YES AA_7 chr13 56644075 56644075 T A exonic Lect2 synonymous SNV NM_010702:c.A447T:p.A149A exonic Lect2 synonymous SNV uc007qst.2:c.A447T:p.A149A exonic ENSMUSG00000021539 synonymous SNV ENSMUST00000062806:c.A447T:p.A149A 13qB1 NA NA chr13 56644075 GTAxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 88 2 0 10.818718 0.166667 0.02 -0.263055 25 5 682 143 60 60 0 0 TT 11.729049 39 0 1056 0 KEEP - Lect2 YES AA_7 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 191 0 11 38.841596 0.8125 0.02 -0.192899 3 13 85 360 60 60 0 0 CC 38.806443 129 0 3718 0 KEEP NA BC052688 NO AA_7 chr13 62108438 62108438 G C intergenic "BC052688(dist=219796),Zfp808(dist=122812)" NA NA intergenic "AK006455(dist=180554),A130040M12Rik(dist=76069)" NA NA intergenic "ENSMUSG00000080451(dist=183414),ENSMUSG00000092904(dist=1389)" NA NA 13qB3 "Score=0.960103;Name=No.33008,chr13:61865990" NA chr13 62108438 ACAxATG G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800173 0.800245 0.999909 65 0 2 12.904853 0.171429 0.02 -0.306699 29 6 820 170 60 38 0 0 GG 7.219695 24 0 687 0 KEEP NA BC052688 NO AA_7 chr13 63634001 63634001 T A exonic Ptch1 nonsynonymous SNV NM_008957:c.A2362T:p.N788Y exonic Ptch1 nonsynonymous SNV uc007qxv.1:c.A2362T:p.N788Y exonic ENSMUSG00000021466 nonsynonymous SNV ENSMUST00000021921:c.A2362T:p.N788Y 13qB3 NA NA chr13 63634001 TGTxGTA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 135 2 0 10.222223 0.096774 0.02 1.241107 56 6 1568 159 60 60 0 0 TT 15.640568 52 0 1440 0 KEEP - Ptch1 YES AA_7 chr13 65442490 65442490 A G intergenic "Zfp369(dist=43387),Gm10324(dist=771899)" NA NA intergenic "Zfp369(dist=43387),AK145544(dist=57800)" NA NA intergenic "ENSMUSG00000021514(dist=36961),ENSMUSG00000090514(dist=38211)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442490 ACCxTGT A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 161 9 15 11.861208 0.1875 0.02 -0.350677 26 6 701 157 60 20 0 0 AA 30.674498 102 0 2747 0 KEEP NA Zfp369 NO AA_7 chr13 65442544 65442544 C A intergenic "Zfp369(dist=43441),Gm10324(dist=771845)" NA NA intergenic "Zfp369(dist=43441),AK145544(dist=57746)" NA NA intergenic "ENSMUSG00000021514(dist=37015),ENSMUSG00000090514(dist=38157)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442544 AACxTTT C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 104 7 30 21.112784 0.533333 0.02 -0.166611 7 8 203 218 36 20 0 0 CC 20.154559 67 0 1920 0 KEEP NA Zfp369 NO AA_7 chr13 76940740 76940740 T A exonic Mctp1 stopgain SNV NM_030174:c.T858A:p.C286X exonic Mctp1 stopgain SNV uc007rgq.1:c.T321A:p.C107X exonic ENSMUSG00000021596 stopgain SNV ENSMUST00000046098:c.T858A:p.C286X 13qC1 NA NA chr13 76940740 CTGxATC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 65 0 0 7.997029 0.133333 0.02 -0.26301 26 4 688 112 60 60 0 0 TT 9.316535 31 0 805 0 KEEP + Mctp1 YES AA_7 chr13 92035592 92035592 T A intronic Rasgrf2 NA NA intronic Rasgrf2 NA NA intronic ENSMUSG00000021708 NA NA 13qC3 NA NA chr13 92035592 TTCxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.899314 0.899314 1 125 0 0 12.487092 0.142857 0.02 -0.368319 36 6 1026 171 60 60 0 0 TT 20.453938 68 0 1900 0 KEEP - Rasgrf2 YES AA_7 chr13 96756655 96756655 T A intronic Sv2c NA NA intronic Sv2c NA NA intronic ENSMUSG00000051111 NA NA 13qD1 NA NA chr13 96756655 CTAxACA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 73 0 0 7.117237 0.102564 0.02 -0.34183 35 4 933 108 60 60 0 0 TT 9.021186 30 0 798 0 KEEP - Sv2c YES AA_7 chr14 102039496 102039496 G C intronic Commd6 NA NA intronic Commd6 NA NA intronic ENSMUSG00000075486 NA NA 14qE2.3 NA NA chr14 102039496 GCGxCCA G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 121 1 0 14.214712 0.155556 0.02 -0.410362 38 7 1006 193 70 70 0 0 GG 17.417912 58 0 1544 0 KEEP - Commd6 NO AA_7 chr14 103454100 103454100 A T exonic Irg1 nonsynonymous SNV NM_008392:c.A842T:p.H281L exonic Irg1 nonsynonymous SNV uc007uwf.2:c.A842T:p.H281L exonic ENSMUSG00000022126 nonsynonymous SNV ENSMUST00000022722:c.A842T:p.H281L 14qE2.3 NA NA chr14 103454100 CCCxCTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 165 0 0 24.846895 0.166667 0.02 1.06395 60 12 1619 332 60 60 0 0 AA 24.05233 80 0 2123 0 KEEP + Irg1 YES AA_7 chr14 29869077 29869077 A G exonic Cacna2d3 nonsynonymous SNV NM_009785:c.T2146C:p.S716P exonic Cacna2d3 nonsynonymous SNV uc007sui.1:c.T2146C:p.S716P exonic ENSMUSG00000021991 nonsynonymous SNV ENSMUST00000022567:c.T2146C:p.S716P 14qA3 NA NA chr14 29869077 CAGxTTT A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 120 0 0 9.72689 0.113636 0.02 -0.3858 39 5 1080 141 60 60 0 0 AA 17.443256 58 0 1608 0 KEEP - Cacna2d3 NO AA_7 chr14 31382352 31382352 A T intronic Tkt NA NA intronic Tkt NA NA intronic ENSMUSG00000021957 NA NA 14qB NA NA chr14 31382352 GACxCAC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 42 0 0 12.014332 0.294118 0.02 -0.149035 12 5 317 141 60 60 0 0 AA 6.014807 20 0 541 0 KEEP + Tkt YES AA_7 chr14 31956313 31956313 T A exonic Stab1 synonymous SNV NM_138672:c.A5643T:p.P1881P exonic Stab1 synonymous SNV uc007swv.1:c.A5643T:p.P1881P exonic ENSMUSG00000042286 synonymous SNV ENSMUST00000159249:c.A66T:p.P22P 14qB NA NA chr14 31956313 GAGxGGC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 99 0 0 11.892108 0.111111 0.02 1.320446 48 6 1267 172 60 60 0 0 TT 10.08701 37 1 981 9 KEEP - Stab1 YES AA_7 chr14 33477017 33477017 A T exonic 3425401B19Rik nonsynonymous SNV NM_001195097:c.T176A:p.V59D exonic 3425401B19Rik nonsynonymous SNV uc007szg.2:c.T176A:p.V59D exonic ENSMUSG00000071540 nonsynonymous SNV ENSMUST00000096038:c.T176A:p.V59D 14qB NA NA chr14 33477017 GTGxCAT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.976865 0.976865 1 119 0 0 14.601488 0.12963 0.02 1.221717 47 7 1288 203 60 60 0 0 AA 16.199554 54 0 1422 0 KEEP - 3425401B19Rik YES AA_7 chr14 33732507 33732507 G A intronic Vstm4 NA NA intronic E130203B14Rik NA NA intronic ENSMUSG00000050666 NA NA 14qB NA NA chr14 33732507 TGTxGTC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 151 0 0 6.965951 0.08 0.02 -0.438216 46 4 1263 111 60 60 0 0 GG 23.462591 78 0 2192 0 KEEP + Vstm4 NO AA_7 chr14 48004318 48004318 A T exonic Lgals3 nonsynonymous SNV NM_001145953:c.A515T:p.H172L exonic Lgals3 nonsynonymous SNV uc007tia.2:c.A515T:p.H172L exonic ENSMUSG00000050335 nonsynonymous SNV ENSMUST00000116487:c.A254T:p.H85L 14qC1 NA NA chr14 48004318 TCCxCTT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 102 0 0 7.813462 0.086957 0.02 -0.403122 42 4 1121 118 60 60 0 0 AA 11.72729 39 0 1048 0 KEEP + Lgals3 YES AA_7 chr14 50654723 50654723 C A exonic Olfr725 nonsynonymous SNV NM_146317:c.G354T:p.M118I exonic Olfr725 nonsynonymous SNV uc007tko.2:c.G354T:p.M118I exonic ENSMUSG00000068437 nonsynonymous SNV ENSMUST00000089844:c.G354T:p.M118I 14qC1 NA NA chr14 50654723 GGCxATG C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 263 5 5 11.573123 0.058333 0.02 2.311853 113 7 3181 198 60 60 0 0 CC 32.787764 109 0 3085 0 KEEP - Olfr725 NO AA_7 chr14 50939878 50939878 A G exonic Olfr734 nonsynonymous SNV NM_146664:c.T631C:p.F211L exonic Olfr734 nonsynonymous SNV uc007tkx.1:c.T631C:p.F211L exonic ENSMUSG00000045306 nonsynonymous SNV ENSMUST00000050928:c.T631C:p.F211L 14qC1 NA NA chr14 50939878 TGAxGCA A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851864 0.851984 0.999859 59 0 0 28.131343 0.315789 0.02 -0.33318 26 12 733 327 60 60 0 0 AA 5.408709 18 0 477 0 KEEP - Olfr734 NO AA_7 chr14 51033267 51033267 T A exonic Olfr738 nonsynonymous SNV NM_146420:c.T47A:p.F16Y exonic Olfr738 nonsynonymous SNV uc007tlb.1:c.T47A:p.F16Y exonic ENSMUSG00000049601 nonsynonymous SNV ENSMUST00000058972:c.T47A:p.F16Y 14qC1 NA NA chr14 51033267 GCTxCAT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 434 2 2 41.797253 0.140127 0.02 3.416079 135 22 3801 589 60 60 0 0 TT 63.749946 212 0 5880 0 KEEP + Olfr738 YES AA_7 chr14 51330755 51330755 T A exonic Olfr748 nonsynonymous SNV NM_001011837:c.T749A:p.L250Q exonic Olfr748 nonsynonymous SNV uc007tlk.1:c.T749A:p.L250Q exonic ENSMUSG00000060084 nonsynonymous SNV ENSMUST00000073561:c.T749A:p.L250Q 14qC1 NA NA chr14 51330755 CTCxGTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 191 0 0 19.559023 0.102041 0.02 0.835848 88 10 2455 288 60 60 0 0 TT 24.06054 80 0 2193 0 KEEP + Olfr748 YES AA_7 chr14 52767235 52767235 T G intronic Rpgrip1 NA NA intronic Rpgrip1 NA NA intronic ENSMUSG00000057132 NA NA 14qC2 NA NA chr14 52767235 GCGxTGC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.580884 0.58293 0.99649 45 0 0 14.663786 0.269231 0.02 -0.227904 19 7 511 179 60 60 0 0 TT 4.51021 15 0 394 0 KEEP + Rpgrip1 NO AA_7 chr14 56372580 56372580 A T exonic Nop9 nonsynonymous SNV NM_026403:c.A1856T:p.Q619L exonic 2610027L16Rik nonsynonymous SNV uc007uao.2:c.A1856T:p.Q619L exonic ENSMUSG00000019297 nonsynonymous SNV ENSMUST00000019441:c.A1856T:p.Q619L 14qC3 NA NA chr14 56372580 AACxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 107 0 0 11.803399 0.12 0.02 -0.438289 44 6 1206 169 60 60 0 0 AA 12.931175 43 0 1180 0 KEEP + Nop9 YES AA_7 chr14 56473195 56473195 A T exonic Nynrin nonsynonymous SNV NM_001040072:c.A130T:p.S44C exonic Nynrin nonsynonymous SNV uc007uaz.2:c.A130T:p.S44C exonic ENSMUSG00000075592 nonsynonymous SNV ENSMUST00000168479:c.A130T:p.S44C 14qC3 NA NA chr14 56473195 CAGxGCC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 222 0 0 16.888989 0.1125 0.02 0.993838 71 9 2024 248 60 60 0 0 AA 30.976938 103 0 2836 0 KEEP + Nynrin YES AA_7 chr14 56663265 56663265 A T exonic Mcpt2 stoploss SNV NM_008571:c.A734T:p.X245L exonic Mcpt2 stoploss SNV uc007ubk.1:c.A734T:p.X245L exonic ENSMUSG00000022226 stoploss SNV ENSMUST00000015576:c.A734T:p.X245L 14qC3 NA NA chr14 56663265 AGTxGCT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 158 0 0 13.628746 0.122807 0.02 1.09766 50 7 1390 195 60 60 0 0 AA 22.553522 75 0 2064 0 KEEP + Mcpt2 YES AA_7 chr14 56737354 56737354 A T intronic Gzme NA NA intronic "Gzmd,Gzme" NA NA intronic ENSMUSG00000022156 NA NA 14qC3 "Score=0.906186;Name=No.53394,chr14:56746886" NA chr14 56737354 GATxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 143 0 0 8.906531 0.075758 0.02 1.116464 61 5 1707 142 60 60 0 0 AA 18.025198 60 0 1603 0 KEEP - Gzme YES AA_7 chr14 59940247 59940247 T A intronic Phf11b NA NA intronic Gm4902 NA NA intronic ENSMUSG00000091649 NA NA 14qC3 "Score=0.958242;Name=No.53405,chr14:59881065" NA chr14 59940247 CTGxCTC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 109 0 0 14.28851 0.137255 0.02 1.346346 44 7 1203 198 60 60 0 0 TT 16.226278 54 0 1430 0 KEEP - Phf11b YES AA_7 chr14 60999058 60999058 A T exonic Amer2 nonsynonymous SNV NM_028113:c.A1864T:p.T622S exonic Fam123a nonsynonymous SNV uc011zmz.1:c.A1864T:p.T622S exonic ENSMUSG00000021986 nonsynonymous SNV ENSMUST00000022561:c.A1864T:p.T622S 14qD1 NA NA chr14 60999058 ACCxCCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800211 0.800245 0.999957 65 0 0 7.91169 0.114286 0.02 -0.306876 31 4 834 114 60 60 0 0 AA 7.517388 25 0 671 0 KEEP + Amer2 YES AA_7 chr14 61824192 61824192 C T intronic Sacs NA NA intronic Sacs NA NA exonic ENSMUSG00000048279 nonsynonymous SNV ENSMUST00000074447:c.C4849T:p.P1617S 14qD1 NA NA chr14 61824192 TTCxCCA C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 140 0 0 9.15909 0.084746 0.02 1.177882 54 5 1504 142 60 60 0 0 CC 19.24792 64 0 1778 0 KEEP + Sacs NO AA_7 chr14 63160278 63160278 A C intergenic "Gucy1b2(dist=85152),Fam124a(dist=14296)" NA NA intergenic "Gucy1b2(dist=85152),AK200207(dist=23046)" NA NA intergenic "ENSMUSG00000064556(dist=20289),ENSMUSG00000035184(dist=14296)" NA NA 14qD1 NA NA chr14 63160278 ACCxCAG A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 393 1 0 37.824019 0.149606 0.02 2.277075 108 19 2933 520 60 60 0 0 AA 61.907179 206 0 5506 0 KEEP NA Gucy1b2 NO AA_7 chr14 65370835 65370835 C T exonic Kif13b stopgain SNV NM_001081177:c.C2515T:p.R839X exonic Kif13b stopgain SNV uc007uim.1:c.C2515T:p.R839X exonic ENSMUSG00000060012 stopgain SNV ENSMUST00000100473:c.C2515T:p.R839X 14qD1 NA NA chr14 65370835 ATGxGAC C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 159 0 0 12.717012 0.114754 0.02 1.063333 54 7 1314 188 60 60 0 0 CC 22.509427 75 0 1880 0 KEEP + Kif13b NO AA_7 chr14 65647774 65647774 A T exonic Ints9 nonsynonymous SNV NM_001253731:c.A1078T:p.S360C exonic Ints9 nonsynonymous SNV uc007uiv.1:c.A1237T:p.S413C exonic ENSMUSG00000021975 nonsynonymous SNV ENSMUST00000043914:c.A1237T:p.S413C 14qD1 NA NA chr14 65647774 TTCxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322803 0.322807 0.999988 50 0 0 6.5111 0.166667 0.02 -0.157845 15 3 420 86 60 60 0 0 AA 8.12094 27 0 746 0 KEEP + Ints9 YES AA_7 chr14 70956293 70956293 A T exonic Hr nonsynonymous SNV NM_021877:c.A98T:p.Q33L exonic Hr nonsynonymous SNV uc007uoj.1:c.A98T:p.Q33L exonic ENSMUSG00000022096 nonsynonymous SNV ENSMUST00000163060:c.A185T:p.Q62L 14qD2 NA NA chr14 70956293 CACxGGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 161 1 0 11.167967 0.095238 0.02 1.142746 57 6 1617 169 60 60 0 0 AA 23.753407 79 0 2170 0 KEEP + Hr YES AA_7 chr14 78011199 78011199 A T exonic Enox1 nonsynonymous SNV NM_001253759:c.A1142T:p.E381V exonic Enox1 nonsynonymous SNV uc007urz.1:c.A1142T:p.E381V exonic ENSMUSG00000022012 nonsynonymous SNV ENSMUST00000022589:c.A1142T:p.E381V 14qD3 NA NA chr14 78011199 CTGxGGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.941741 0.941741 1 110 0 0 11.873662 0.12766 0.02 -0.412177 41 6 1175 168 60 60 0 0 AA 15.040484 50 0 1411 0 KEEP + Enox1 YES AA_7 chr14 8603843 8603843 T A intergenic "Gm3558(dist=202763),Flnb(dist=46628)" NA NA ncRNA_intronic AK041589 NA NA ncRNA_intronic "ENSMUSG00000072723,ENSMUSG00000084775" NA NA 14qA1 NA NA chr14 8603843 GTGxTGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582854 0.58293 0.999869 53 0 0 8.164275 0.153846 0.02 -0.227986 22 4 608 111 60 60 0 0 TT 6.015124 20 0 546 0 KEEP - Gm3558 YES AA_7 chr14 8738441 8738441 A T exonic Flnb nonsynonymous SNV NM_134080:c.A3676T:p.I1226L exonic Flnb nonsynonymous SNV uc007sek.1:c.A3676T:p.I1226L exonic ENSMUSG00000025278 nonsynonymous SNV ENSMUST00000052678:c.A3676T:p.I1226L 14qA1 NA NA chr14 8738441 GCCxTAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 80 0 0 11.823598 0.139535 0.02 -0.376988 37 6 991 165 60 60 0 0 AA 9.021819 30 0 807 0 KEEP + Flnb YES AA_7 chr15 101360688 101360688 A T exonic Krt84 nonsynonymous SNV NM_008474:c.T794A:p.V265E exonic Krt84 nonsynonymous SNV uc007xtm.2:c.T794A:p.V265E exonic ENSMUSG00000044294 nonsynonymous SNV ENSMUST00000023720:c.T794A:p.V265E 15qF2 NA NA chr15 101360688 ACCxCCT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 232 4 0 9.258102 0.088235 0.02 1.198202 62 6 1629 151 60 60 0 0 AA 36.336165 121 0 3087 0 KEEP - Krt84 YES AA_7 chr15 101477507 101477507 T G ncRNA_exonic Gm5478 NA NA ncRNA_exonic Gm5478 NA NA intergenic "ENSMUSG00000064232(dist=18888),ENSMUSG00000023041(dist=28958)" NA NA 15qF2 NA NA chr15 101477507 CCAxAGG T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 94 9 2 12.625396 0.15 0.02 -0.359391 34 6 898 171 60 37 0 0 TT 12.313113 41 0 1069 0 KEEP - Gm5478 NO AA_7 chr15 101539308 101539308 T A exonic Krt5 nonsynonymous SNV NM_027011:c.A1420T:p.R474W exonic Krt5 nonsynonymous SNV uc007xtw.1:c.A1420T:p.R474W exonic ENSMUSG00000061527 nonsynonymous SNV ENSMUST00000023709:c.A1420T:p.R474W 15qF2 NA NA chr15 101539308 ACCxGCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 190 0 0 8.84789 0.080645 0.02 1.15153 57 5 1616 140 60 60 0 0 TT 30.077932 100 0 2779 0 KEEP - Krt5 YES AA_7 chr15 101860307 101860307 T A exonic Krt18 nonsynonymous SNV NM_010664:c.T533A:p.L178H exonic Krt18 nonsynonymous SNV uc007xuj.2:c.T533A:p.L178H exonic ENSMUSG00000023043 nonsynonymous SNV ENSMUST00000023803:c.T533A:p.L178H 15qF3 NA NA chr15 101860307 GACxCCG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877585 0.877708 0.99986 67 0 0 14.389046 0.175 0.02 -0.350762 33 7 934 191 60 60 0 0 TT 5.715215 19 0 533 0 KEEP + Krt18 YES AA_7 chr15 25552698 25552698 C T UTR5 Myo10 NA NA UTR5 "Myo10,myo10" NA NA UTR5 ENSMUSG00000022272 NA NA 15qB1 NA NA chr15 25552698 TTCxCGG C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999999 65 0 0 8.680866 0.181818 0.02 -0.1929 18 4 492 113 60 60 0 0 CC 10.825849 36 0 975 0 KEEP + Myo10 NO AA_7 chr15 25631440 25631440 A T exonic Myo10 nonsynonymous SNV NM_019472:c.A244T:p.N82Y exonic "Myo10,myo10" nonsynonymous SNV uc007vjb.1:c.A145T:p.N49Y exonic ENSMUSG00000022272 nonsynonymous SNV ENSMUST00000137601:c.A145T:p.N49Y 15qB1 NA NA chr15 25631440 TACxACC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 130 6 0 6.639816 0.083333 0.02 -0.420912 44 4 1230 107 60 60 0 0 AA 18.045343 60 0 1641 0 KEEP + Myo10 YES AA_7 chr15 35805360 35805360 A T exonic Vps13b nonsynonymous SNV NM_177151:c.A8135T:p.Q2712L exonic Vps13b nonsynonymous SNV uc007vmh.2:c.A8135T:p.Q2712L exonic ENSMUSG00000037646 nonsynonymous SNV ENSMUST00000048646:c.A8135T:p.Q2712L 15qB3.1 NA NA chr15 35805360 CTCxGAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 79 1 0 8.009058 0.108108 0.02 -0.32445 33 4 920 116 60 60 0 0 AA 8.421324 28 0 772 0 KEEP + Vps13b YES AA_7 chr15 39659674 39659674 T C exonic Dpys nonsynonymous SNV NM_001164466:c.A797G:p.N266S exonic Dpys nonsynonymous SNV uc007vok.2:c.A797G:p.N266S exonic ENSMUSG00000022304 nonsynonymous SNV ENSMUST00000022915:c.A797G:p.N266S 15qB3.1 NA NA chr15 39659674 ACAxTTC T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 123 0 0 16.071375 0.129032 0.02 1.151566 54 8 1488 226 60 60 0 0 TT 14.132792 47 0 1274 0 KEEP - Dpys NO AA_7 chr15 54890434 54890434 G A exonic Taf2 synonymous SNV NM_001081288:c.C1011T:p.D337D exonic Taf2 synonymous SNV uc007vrv.1:c.C504T:p.D168D exonic ENSMUSG00000037343 synonymous SNV ENSMUST00000041733:c.C1011T:p.D337D 15qD1 NA NA chr15 54890434 CTCxTCT G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 67 2 0 27.122333 0.407407 0.02 -0.236698 16 11 418 298 60 60 0 0 GG 10.816809 36 0 913 0 KEEP - Taf2 NO AA_7 chr15 54920597 54920597 T A exonic Dscc1 synonymous SNV NM_183089:c.A282T:p.T94T exonic Dscc1 synonymous SNV uc007vrw.1:c.A282T:p.T94T exonic ENSMUSG00000022422 synonymous SNV ENSMUST00000023059:c.A282T:p.T94T 15qD1 NA NA chr15 54920597 GGAxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58289 0.58293 0.999931 57 0 0 8.563665 0.153846 0.02 -0.227993 22 4 608 115 60 60 0 0 TT 7.518345 25 0 674 0 KEEP - Dscc1 YES AA_7 chr15 55420239 55420239 A T exonic Mtbp synonymous SNV NM_001168250:c.A1350T:p.P450P exonic Mtbp synonymous SNV uc007vsj.1:c.A231T:p.P77P exonic ENSMUSG00000022369 synonymous SNV ENSMUST00000169667:c.A231T:p.P77P 15qD1 NA NA chr15 55420239 CCCxAGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 126 0 0 11.441625 0.105263 0.02 1.186603 51 6 1435 169 60 60 0 0 AA 15.939538 53 0 1448 0 KEEP + Mtbp YES AA_7 chr15 57931606 57931606 T A exonic Atad2 nonsynonymous SNV NM_027435:c.A3169T:p.T1057S exonic Atad2 nonsynonymous SNV uc007vtf.1:c.A3169T:p.T1057S exonic ENSMUSG00000022360 nonsynonymous SNV ENSMUST00000022988:c.A2197T:p.T733S 15qD1 NA NA chr15 57931606 CAGxGTC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 123 0 0 7.573993 0.085106 0.02 -0.412138 43 4 1190 116 60 60 0 0 TT 20.450818 68 0 1848 0 KEEP - Atad2 YES AA_7 chr15 63609003 63609003 A T exonic Gsdmc nonsynonymous SNV NM_031378:c.T1160A:p.V387E exonic "Gsdmc,Gsdmc2" nonsynonymous SNV uc007vyt.1:c.T1160A:p.V387E exonic ENSMUSG00000079025 nonsynonymous SNV ENSMUST00000110125:c.T1160A:p.V387E 15qD1 "Score=0.9193;Name=No.57789,chr15:63721052" NA chr15 63609003 TCCxCTT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 90 0 0 8.036 0.129032 0.02 -0.271786 27 4 732 113 60 60 0 0 AA 12.626062 42 0 1125 0 KEEP - Gsdmc YES AA_7 chr15 65684714 65684714 A T intronic Efr3a NA NA intronic Efr3a NA NA intronic ENSMUSG00000015002 NA NA 15qD1 NA NA chr15 65684714 GGGxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 65 0 0 8.059481 0.137931 0.02 -0.254321 25 4 715 112 60 60 0 0 AA 8.073956 27 0 704 0 KEEP + Efr3a YES AA_7 chr15 65708156 65708156 A T intronic Oc90 NA NA intronic Oc90 NA NA intronic ENSMUSG00000015001 NA NA 15qD1 NA NA chr15 65708156 AGCxAGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 87 0 0 14.460326 0.184211 0.02 -0.333229 31 7 874 190 60 60 0 0 AA 12.331434 41 0 1127 0 KEEP - Oc90 YES AA_7 chr15 76540575 76540575 T A exonic Recql4 stopgain SNV NM_058214:c.A172T:p.R58X exonic Recql4 stopgain SNV uc007wlu.1:c.A172T:p.R58X exonic ENSMUSG00000033762 stopgain SNV ENSMUST00000036852:c.A172T:p.R58X 15qD3 NA NA chr15 76540575 GTCxGTC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 160 0 0 13.992062 0.126984 0.02 1.143318 55 8 1557 205 60 60 0 0 TT 23.159835 77 0 2131 0 KEEP - Recql4 YES AA_7 chr15 83208133 83208133 T A exonic Pacsin2 nonsynonymous SNV NM_001159509:c.A1376T:p.E459V exonic Pacsin2 nonsynonymous SNV uc007xba.2:c.A1376T:p.E459V exonic ENSMUSG00000016664 nonsynonymous SNV ENSMUST00000165095:c.A1376T:p.E459V 15qE1 NA NA chr15 83208133 TCTxCAT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 308 2 0 14.755025 0.076923 0.02 2.055228 120 10 3405 251 60 60 0 0 TT 39.400706 131 0 3642 0 KEEP - Pacsin2 YES AA_7 chr15 85863123 85863123 C T exonic Celsr1 nonsynonymous SNV NM_009886:c.G1078A:p.D360N exonic Celsr1 nonsynonymous SNV uc007xdt.1:c.G1078A:p.D360N exonic ENSMUSG00000016028 nonsynonymous SNV ENSMUST00000016172:c.G1078A:p.D360N 15qE2 NA NA chr15 85863123 TGTxACT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 151 0 0 18.99481 0.133333 0.02 1.037678 65 10 1847 270 60 60 0 0 CC 18.041873 60 0 1706 0 KEEP - Celsr1 NO AA_7 chr15 9294874 9294874 T G intronic Ugt3a2 NA NA intronic Ugt3a2 NA NA intronic ENSMUSG00000049152 NA NA 15qA1 NA NA chr15 9294874 TTTxCCT T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 199 0 0 14.736572 0.1 0.02 0.993689 72 8 2029 222 60 60 0 0 TT 25.263217 84 0 2320 0 KEEP + Ugt3a2 NO AA_7 chr15 97580711 97580711 T A exonic Rapgef3 nonsynonymous SNV NM_001177810:c.A2047T:p.R683W exonic Rapgef3 nonsynonymous SNV uc007xkz.2:c.A2047T:p.R683W exonic ENSMUSG00000022469 nonsynonymous SNV ENSMUST00000023109:c.A1921T:p.R641W 15qF1 NA NA chr15 97580711 TCCxGTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 239 0 0 17.916124 0.088496 0.02 2.399538 103 10 2898 278 60 60 0 0 TT 29.169384 97 0 2677 0 KEEP - Rapgef3 YES AA_7 chr15 99253148 99253148 G C exonic Nckap5l synonymous SNV NM_001001884:c.C3954G:p.S1318S exonic Nckap5l synonymous SNV uc007xpn.1:c.C3954G:p.S1318S exonic ENSMUSG00000023009 synonymous SNV ENSMUST00000023747:c.C3954G:p.S1318S 15qF1 NA NA chr15 99253148 ACAxGAG G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 92 0 0 8.140759 0.119048 0.02 -0.368271 37 5 1042 124 60 60 0 0 GG 10.528537 35 0 994 0 KEEP - Nckap5l NO AA_7 chr15 99550645 99550645 A C exonic Gpd1 nonsynonymous SNV NM_010271:c.A479C:p.K160T exonic Gpd1 nonsynonymous SNV uc007xqd.1:c.A479C:p.K160T exonic ENSMUSG00000023019 nonsynonymous SNV ENSMUST00000023760:c.A479C:p.K160T 15qF1 NA NA chr15 99550645 AGAxGTT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999999 67 0 0 15.978 0.333333 0.02 -0.210367 16 8 451 188 60 60 0 0 AA 10.527915 35 0 981 0 KEEP + Gpd1 NO AA_7 chr16 14706051 14706051 C G UTR5 Snai2 NA NA UTR5 Snai2 NA NA UTR5 ENSMUSG00000022676 NA NA 16qA1 NA NA chr16 14706051 GCGxCCG C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934489 0.934492 0.999997 88 0 0 25.062808 0.23913 0.02 -0.403342 35 11 971 308 60 60 0 0 CC 8.115054 29 1 740 5 KEEP + Snai2 NO AA_7 chr16 16323377 16323377 T A intronic Dnm1l NA NA intronic Dnm1l NA NA intronic ENSMUSG00000022789 NA NA 16qA2 NA NA chr16 16323377 TTAxGTA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 196 0 0 14.957777 0.095238 0.02 0.958719 76 8 2046 226 60 60 0 0 TT 28.870316 96 0 2586 0 KEEP - Dnm1l YES AA_7 chr16 18245303 18245303 T A exonic Ranbp1 nonsynonymous SNV NM_011239:c.A301T:p.N101Y exonic Ranbp1 nonsynonymous SNV uc007ymy.1:c.A301T:p.N101Y exonic ENSMUSG00000005732 nonsynonymous SNV ENSMUST00000052325:c.A151T:p.N51Y 16qA3 NA NA chr16 18245303 GGTxGGC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 120 0 0 16.975736 0.177778 0.02 -0.394598 37 8 1038 223 60 60 0 0 TT 16.803396 56 0 1491 0 KEEP - Ranbp1 YES AA_7 chr16 23485645 23485645 T A intronic Masp1 NA NA intronic Masp1 NA NA intronic ENSMUSG00000022887 NA NA 16qB1 NA NA chr16 23485645 GCTxAGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 155 0 0 12.417131 0.092105 0.02 1.030468 69 7 1811 192 60 60 0 0 TT 17.138262 57 0 1558 0 KEEP - Masp1 YES AA_7 chr16 28752949 28752949 T A UTR5 Fgf12 NA NA UTR5 Fgf12 NA NA intergenic "ENSMUSG00000076064(dist=152820),ENSMUSG00000051065(dist=73313)" NA NA 16qB2 NA NA chr16 28752949 GAGxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641339 0.641347 0.999988 66 0 0 16.519597 0.25 0.02 -0.244529 21 7 552 200 60 60 0 0 TT 8.119945 27 0 730 0 KEEP - Fgf12 YES AA_7 chr16 28752955 28752955 G C UTR5 Fgf12 NA NA UTR5 Fgf12 NA NA intergenic "ENSMUSG00000076064(dist=152826),ENSMUSG00000051065(dist=73307)" NA NA 16qB2 NA NA chr16 28752955 TGGxAAG G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.64132 0.641347 0.999957 64 0 0 13.746607 0.214286 0.02 -0.245549 22 6 625 172 60 60 0 0 GG 7.820362 26 0 732 0 KEEP - Fgf12 NO AA_7 chr16 33967095 33967095 C G upstream Umps NA NA upstream Umps NA NA ncRNA_exonic ENSMUSG00000086083 NA NA 16qB3 NA NA chr16 33967095 AAGxCGA C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 120 2 0 19.279053 0.176471 0.02 1.248083 42 9 1168 253 60 60 0 0 CC 16.239399 54 0 1472 0 KEEP NA Umps NO AA_7 chr16 36082883 36082883 G T exonic Ccdc58 nonsynonymous SNV NM_001159422:c.G128T:p.C43F exonic Ccdc58 nonsynonymous SNV uc007zce.2:c.G158T:p.C53F exonic ENSMUSG00000075229 nonsynonymous SNV ENSMUST00000099937:c.G128T:p.C43F 16qB3 NA NA chr16 36082883 CCTxTAA G T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 113 5 0 9.579991 0.116279 0.02 -0.377062 38 5 1059 139 60 37 0 0 GG 16.243799 54 0 1531 0 KEEP + Ccdc58 NO AA_7 chr16 36510085 36510085 A T exonic Casr synonymous SNV NM_013803:c.T972A:p.A324A exonic Casr synonymous SNV uc007zcp.1:c.T972A:p.A324A exonic ENSMUSG00000051980 synonymous SNV ENSMUST00000063597:c.T972A:p.A324A 16qB3 NA NA chr16 36510085 CCCxGCC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 182 0 0 16.09601 0.123077 0.02 1.12525 57 8 1588 228 60 60 0 0 AA 25.250184 84 0 2312 0 KEEP - Casr YES AA_7 chr16 36761562 36761562 T A splicing Slc15a2(NM_021301:exon12:c.991-2A>T) NA NA splicing Slc15a2(uc007zcv.2:exon12:c.991-2A>T) NA NA splicing "ENSMUSG00000022899(ENSMUST00000023616:exon12:c.991-2A>T,ENSMUST00000165531:exon11:c.898-2A>T)" NA NA 16qB3 NA NA chr16 36761562 CCCxAGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 144 0 0 11.59422 0.115385 0.02 1.239232 46 6 1292 168 60 60 0 0 TT 21.053483 70 0 1925 0 KEEP - Slc15a2 YES AA_7 chr16 38585365 38585365 C T exonic Tmem39a stopgain SNV NM_001205286:c.C652T:p.Q218X exonic Tmem39a stopgain SNV uc007zfe.1:c.C652T:p.Q218X exonic ENSMUSG00000002845 stopgain SNV ENSMUST00000163948:c.C190T:p.Q64X 16qB4 NA NA chr16 38585365 GTTxAGC C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 123 1 0 61.229237 0.470588 0.02 1.248025 27 24 763 651 60 60 0 0 CC 16.540226 55 0 1571 0 KEEP + Tmem39a NO AA_7 chr16 3965120 3965120 C G exonic Nlrc3 nonsynonymous SNV NM_001081280:c.G472C:p.V158L exonic Nlrc3 nonsynonymous SNV uc007xzc.1:c.G472C:p.V158L exonic ENSMUSG00000049871 nonsynonymous SNV ENSMUST00000096308:c.G472C:p.V158L 16qA1 NA NA chr16 3965120 TAAxTCT C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 142 0 0 10.683066 0.085714 0.02 1.081449 64 6 1768 167 60 60 0 0 CC 19.536143 65 0 1814 0 KEEP - Nlrc3 NO AA_7 chr16 48293782 48293782 A G intronic Dppa4 NA NA intronic Dppa4 NA NA intronic ENSMUSG00000058550 NA NA 16qB5 "Score=0.979904;Name=No.62599,chr2:122039847" NA chr16 48293782 ATGxATG A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 286 0 0 45.215374 0.208333 0.02 0.951723 76 20 2146 570 60 60 0 0 AA 46.923394 156 0 4353 0 KEEP + Dppa4 NO AA_7 chr17 13085217 13085217 T A exonic Pnldc1 nonsynonymous SNV NM_001034866:c.A1083T:p.E361D exonic Pnldc1 nonsynonymous SNV uc012akg.1:c.A1083T:p.E361D exonic ENSMUSG00000073460 nonsynonymous SNV ENSMUST00000163394:c.A1083T:p.E361D 17qA1 NA NA chr17 13085217 TGCxTCG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 101 0 0 7.211165 0.108108 0.02 -0.324462 33 4 932 108 60 60 0 0 TT 15.640634 52 0 1444 0 KEEP - Pnldc1 YES AA_7 chr17 17850161 17850161 A C exonic Vmn2r90 nonsynonymous SNV NM_001104539:c.A1018C:p.T340P exonic Vmn2r90 nonsynonymous SNV uc009vau.1:c.A1018C:p.T340P exonic ENSMUSG00000092120 nonsynonymous SNV ENSMUST00000169805:c.A1018C:p.T340P 17qA3.2 NA NA chr17 17850161 AGAxCAG A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 218 0 0 7.773167 0.059524 0.02 0.95877 79 5 2173 136 60 60 0 0 AA 32.771536 109 0 2981 0 KEEP + Vmn2r90 NO AA_7 chr17 20711241 20711241 A T exonic Vmn2r110 nonsynonymous SNV NM_001104572:c.T2129A:p.L710H exonic Vmn2r110 nonsynonymous SNV uc009vbn.1:c.T2129A:p.L710H exonic ENSMUSG00000091259 nonsynonymous SNV ENSMUST00000169559:c.T2129A:p.L710H 17qA3.2 NA NA chr17 20711241 CAAxGAA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 222 3 20 16.368943 0.096774 0.02 0.781789 84 9 2383 249 60 60 0 0 AA 30.079114 100 0 2791 0 KEEP - Vmn2r110 YES AA_7 chr17 23781640 23781640 A T exonic Mmp25 nonsynonymous SNV NM_001033339:c.T182A:p.L61H exonic Mmp25 nonsynonymous SNV uc008asq.1:c.T182A:p.L61H exonic ENSMUSG00000023903 nonsynonymous SNV ENSMUST00000024696:c.T182A:p.L61H 17qA3.3 NA NA chr17 23781640 GGGxGAC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 177 0 0 12.601667 0.117647 0.02 1.002456 60 8 1684 193 60 60 0 0 AA 26.336725 88 0 2324 0 KEEP - Mmp25 YES AA_7 chr17 24323073 24323073 T C exonic Tbc1d24 nonsynonymous SNV NM_001163847:c.A41G:p.K14R exonic Tbc1d24 nonsynonymous SNV uc008auq.2:c.A41G:p.K14R exonic ENSMUSG00000036473 nonsynonymous SNV ENSMUST00000040474:c.A41G:p.K14R 17qA3.3 NA NA chr17 24323073 ATCxTGT T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999998 85 0 0 23.231334 0.25641 0.02 -0.341991 29 10 814 281 60 60 0 0 TT 10.225967 34 0 935 0 KEEP - Tbc1d24 NO AA_7 chr17 25628205 25628205 T A exonic Sstr5 nonsynonymous SNV NM_001191008:c.A994T:p.I332L exonic Sstr5 nonsynonymous SNV uc012anh.1:c.A994T:p.I332L exonic ENSMUSG00000050824 nonsynonymous SNV ENSMUST00000165183:c.A994T:p.I332L 17qA3.3 NA NA chr17 25628205 CTAxGGC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 65 2 0 8.076794 0.125 0.02 -0.280584 28 4 761 114 60 60 0 0 TT 8.420538 28 0 754 0 KEEP - Sstr5 YES AA_7 chr17 25955054 25955054 T A exonic Fbxl16 nonsynonymous SNV NM_001164225:c.T1063A:p.W355R exonic Fbxl16 nonsynonymous SNV uc008bcc.2:c.T1174A:p.W392R exonic ENSMUSG00000025738 nonsynonymous SNV ENSMUST00000045692:c.T1063A:p.W355R 17qA3.3 NA NA chr17 25955054 TCCxGGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 118 0 0 9.220673 0.083333 0.02 1.267372 55 5 1545 143 60 60 0 0 TT 15.639279 52 0 1419 0 KEEP + Fbxl16 YES AA_7 chr17 28674579 28674579 A T exonic Armc12 nonsynonymous SNV NM_026290:c.A526T:p.N176Y exonic 4930511I11Rik nonsynonymous SNV uc008brd.2:c.A526T:p.N176Y exonic ENSMUSG00000024223 nonsynonymous SNV ENSMUST00000025060:c.A526T:p.N176Y 17qA3.3 NA NA chr17 28674579 AACxACC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 75 0 0 6.839953 0.129032 0.02 -0.271676 27 4 706 101 60 60 0 0 AA 10.21882 34 0 882 0 KEEP + Armc12 YES AA_7 chr17 29177681 29177681 A T intronic Srsf3 NA NA ncRNA_intronic Sfrs3 NA NA intronic ENSMUSG00000071172 NA NA 17qA3.3 NA NA chr17 29177681 AATxATT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 359 0 0 16.056351 0.091837 0.02 0.729307 89 9 2421 248 60 60 0 0 AA 56.536618 188 0 5108 0 KEEP + Srsf3 YES AA_7 chr17 31242996 31242996 T A intronic Abcg1 NA NA intronic Abcg1 NA NA intronic ENSMUSG00000024030 NA NA 17qA3.3 NA NA chr17 31242996 GCTxCCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 40 0 0 13.986454 0.333333 0.02 -0.157838 12 6 339 161 60 60 0 0 TT 4.812526 16 0 444 0 KEEP + Abcg1 YES AA_7 chr17 33406412 33406412 A T exonic Olfr63 nonsynonymous SNV NM_146937:c.A742T:p.T248S exonic Olfr63 nonsynonymous SNV uc008byg.1:c.A742T:p.T248S exonic ENSMUSG00000054666 nonsynonymous SNV ENSMUST00000067840:c.A742T:p.T248S 17qB1 NA NA chr17 33406412 CTCxCTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999973 0.999973 1 253 0 0 12.279068 0.068627 0.02 2.496075 95 7 2614 200 60 60 0 0 AA 38.481469 128 0 3424 0 KEEP + Olfr63 YES AA_7 chr17 34196090 34196090 A T exonic Col11a2 synonymous SNV NM_009926:c.A2973T:p.P991P exonic Col11a2 synonymous SNV uc008cbd.1:c.A2049T:p.P683P exonic ENSMUSG00000024330 synonymous SNV ENSMUST00000143354:c.A2049T:p.P683P 17qB1 NA NA chr17 34196090 CCCxGGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 106 0 0 14.324777 0.134615 0.02 1.230464 45 7 1268 199 60 60 0 0 AA 12.330542 41 0 1131 0 KEEP + Col11a2 YES AA_7 chr17 34678189 34678189 A T intergenic "Btnl6(dist=23892),Notch4(dist=23051)" NA NA exonic Btnl7 nonsynonymous SNV uc008ccq.1:c.T724A:p.F242I exonic ENSMUSG00000061728 nonsynonymous SNV ENSMUST00000023469:c.T724A:p.F242I 17qB1 "Score=0.897227;Name=No.65646,chr17:34650133" NA chr17 34678189 AGAxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 74 0 0 7.313354 0.114286 0.02 -0.306892 31 4 876 108 60 60 0 0 AA 8.422418 28 0 785 0 KEEP - Btnl6 YES AA_7 chr17 36118392 36118392 C T exonic Gnl1 nonsynonymous SNV NM_008136:c.C517T:p.H173Y exonic Gnl1 nonsynonymous SNV uc008cjo.1:c.C517T:p.H173Y exonic ENSMUSG00000024429 nonsynonymous SNV ENSMUST00000087200:c.C517T:p.H173Y 17qB1 NA NA chr17 36118392 GAGxACA C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 73 0 0 7.115528 0.102564 0.02 -0.341968 35 4 975 108 60 60 0 0 CC 9.016436 30 0 823 0 KEEP + Gnl1 NO AA_7 chr17 36597342 36597342 C G exonic H2-M10.4 synonymous SNV NM_177634:c.G888C:p.L296L exonic H2-M10.4 synonymous SNV uc008cla.1:c.G888C:p.L296L exonic ENSMUSG00000048231 synonymous SNV ENSMUST00000057502:c.G888C:p.L296L 17qB1 NA NA chr17 36597342 TTTxAGA C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 333 0 0 11.819706 0.057377 0.02 2.320554 115 7 3298 201 60 60 0 0 CC 49.624236 165 0 4715 0 KEEP - H2-M10.4 NO AA_7 chr17 36597349 36597349 A T exonic H2-M10.4 nonsynonymous SNV NM_177634:c.T881A:p.L294H exonic H2-M10.4 nonsynonymous SNV uc008cla.1:c.T881A:p.L294H exonic ENSMUSG00000048231 nonsynonymous SNV ENSMUST00000057502:c.T881A:p.L294H 17qB1 NA NA chr17 36597349 GTGxGTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 336 0 0 9.165073 0.05042 0.02 2.151435 113 6 3212 166 60 60 0 0 AA 51.393335 171 0 4719 0 KEEP - H2-M10.4 YES AA_7 chr17 38286152 38286152 T A exonic Olfr133 synonymous SNV NM_146831:c.T618A:p.L206L exonic Olfr133 synonymous SNV uc008cnz.1:c.T618A:p.L206L exonic ENSMUSG00000063240 synonymous SNV ENSMUST00000113636:c.T618A:p.L206L 17qB1 NA NA chr17 38286152 TCTxTTA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 146 0 0 16.341684 0.113924 0.02 0.904596 70 9 1965 242 60 60 0 0 TT 16.842103 56 0 1549 0 KEEP + Olfr133 YES AA_7 chr17 47490903 47490903 A C intronic Trerf1 NA NA intronic Trerf1 NA NA intronic ENSMUSG00000064043 NA NA 17qC NA NA chr17 47490903 TGCxCTT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 124 2 0 12.555179 0.146341 0.02 -0.359491 35 6 949 171 70 70 0 0 AA 16.472393 60 1 1608 14 KEEP + Trerf1 NO AA_7 chr17 63920471 63920471 T A intergenic "Fbxl17(dist=70542),Fert2(dist=324896)" NA NA intergenic "Fbxl17(dist=70542),Fert2(dist=292859)" NA NA intergenic "ENSMUSG00000023965(dist=71105),ENSMUSG00000045506(dist=292178)" NA NA 17qE1.1 NA NA chr17 63920471 GGAxGGC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 258 1 0 8.378837 0.0625 0.02 0.994199 75 5 1998 141 60 60 0 0 TT 41.800002 139 0 3734 0 KEEP NA Fbxl17 YES AA_7 chr17 68159146 68159146 A C intronic Lama1 NA NA intronic Lama1 NA NA intronic ENSMUSG00000032796 NA NA 17qE1.1 NA NA chr17 68159146 TGAxGTG A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.518266 0.522161 0.99254 34 0 0 10.358466 0.217391 0.02 -0.210401 18 5 491 132 60 60 0 0 AA 2.706814 9 0 248 0 KEEP + Lama1 NO AA_7 chr17 74179564 74179564 A T exonic Ehd3 nonsynonymous SNV NM_020578:c.A1387T:p.T463S exonic Ehd3 nonsynonymous SNV uc008dnn.2:c.A1387T:p.T463S exonic ENSMUSG00000024065 nonsynonymous SNV ENSMUST00000024860:c.A1387T:p.T463S 17qE2 NA NA chr17 74179564 ATCxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 140 1 0 9.140314 0.076923 0.02 1.125317 60 5 1649 144 60 60 0 0 AA 17.442975 58 0 1571 0 KEEP + Ehd3 YES AA_7 chr17 74270596 74270596 A T intronic Xdh NA NA intronic Xdh NA NA intronic ENSMUSG00000024066 NA NA 17qE2 NA NA chr17 74270596 CTCxGGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 170 0 0 15.840185 0.121212 0.02 1.098958 58 8 1612 226 70 60 0 0 AA 22.846983 76 0 2086 0 KEEP - Xdh YES AA_7 chr18 16433205 16433205 A T intergenic "Chst9(dist=556650),Cdh2(dist=314181)" NA NA intergenic "Chst9(dist=514539),Cdh2(dist=314181)" NA NA exonic ENSMUSG00000063628 synonymous SNV ENSMUST00000076710:c.T249A:p.A83A 18qA1 NA NA chr18 16433205 TATxGCT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 132 0 0 11.256755 0.098361 0.02 1.160437 55 6 1522 169 60 60 0 0 AA 15.031178 50 0 1367 0 KEEP NA Chst9 YES AA_7 chr18 16788078 16788078 A G exonic Cdh2 synonymous SNV NM_007664:c.T1488C:p.Y496Y exonic Cdh2 synonymous SNV uc008edx.2:c.T1488C:p.Y496Y exonic ENSMUSG00000024304 synonymous SNV ENSMUST00000115850:c.T1317C:p.Y439Y 18qA1 NA NA chr18 16788078 AAAxTAA A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 97 2 0 37.092478 0.355556 0.02 -0.394147 29 16 793 422 60 60 0 0 AA 12.631667 42 0 1148 0 KEEP - Cdh2 NO AA_7 chr18 24016542 24016542 A T exonic Mapre2 nonsynonymous SNV NM_153058:c.A491T:p.K164M exonic Mapre2 nonsynonymous SNV uc008egf.2:c.A491T:p.K164M exonic ENSMUSG00000024277 nonsynonymous SNV ENSMUST00000025127:c.A491T:p.K164M 18qA2 NA NA chr18 24016542 GGAxGGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 100 0 0 6.764891 0.105263 0.02 -0.333147 34 4 934 104 60 60 0 0 AA 15.038901 50 0 1385 0 KEEP + Mapre2 YES AA_7 chr18 36181618 36181618 A T exonic Nrg2 nonsynonymous SNV NM_001167891:c.T1466A:p.V489E exonic Nrg2 nonsynonymous SNV uc012bbl.1:c.T1466A:p.V489E exonic ENSMUSG00000060275 nonsynonymous SNV ENSMUST00000115712:c.T1448A:p.V483E 18qB2 NA NA chr18 36181618 GGCxCAT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739568 0.739671 0.99986 59 0 0 19.231206 0.258065 0.02 -0.271833 23 8 629 231 60 60 0 0 AA 5.708705 19 0 494 0 KEEP - Nrg2 YES AA_7 chr18 37468105 37468105 T A exonic Pcdhb4 synonymous SNV NM_053129:c.T813A:p.A271A exonic Pcdhb4 synonymous SNV uc008epp.1:c.T813A:p.A271A exonic ENSMUSG00000045689 synonymous SNV ENSMUST00000056712:c.T813A:p.A271A 18qB3 NA NA chr18 37468105 TGCxGGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999919 0.999919 1 189 0 0 10.444769 0.065217 0.02 0.870897 86 6 2430 172 60 60 0 0 TT 21.64427 72 0 1981 0 KEEP + Pcdhb4 YES AA_7 chr18 37572434 37572434 A T exonic Pcdhb10 nonsynonymous SNV NM_053135:c.A908T:p.K303I exonic Pcdhb10 nonsynonymous SNV uc008epv.1:c.A908T:p.K303I exonic ENSMUSG00000045657 nonsynonymous SNV ENSMUST00000051126:c.A908T:p.K303I 18qB3 NA NA chr18 37572434 TTAxAGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 301 2 0 12.009005 0.056738 0.02 1.755051 133 8 3714 215 60 60 0 0 AA 39.696296 132 0 3637 0 KEEP + Pcdhb10 YES AA_7 chr18 37583649 37583649 A T exonic Pcdhb11 nonsynonymous SNV NM_053136:c.A2377T:p.S793C exonic Pcdhb11 nonsynonymous SNV uc008epw.1:c.A2377T:p.S793C exonic ENSMUSG00000051486 nonsynonymous SNV ENSMUST00000053073:c.A2377T:p.S793C 18qB3 NA NA chr18 37583649 GATxGCT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 240 0 0 24.865839 0.118182 0.02 2.425955 97 13 2651 360 60 60 0 0 AA 30.052764 100 0 2700 0 KEEP + Pcdhb11 YES AA_7 chr18 42708079 42708079 G A exonic Tcerg1 nonsynonymous SNV NM_001039474:c.G1636A:p.V546I exonic Tcerg1 nonsynonymous SNV uc008etw.1:c.G1573A:p.V525I exonic ENSMUSG00000024498 nonsynonymous SNV ENSMUST00000115545:c.G1573A:p.V525I 18qB3 NA NA chr18 42708079 AGGxTCT G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 89 0 0 33.720243 0.358974 0.02 -0.341962 25 14 698 381 60 60 0 0 GG 12.933315 43 0 1193 0 KEEP + Tcerg1 NO AA_7 chr18 44166143 44166143 A T intronic Spink5 NA NA intronic Spink5 NA NA intronic ENSMUSG00000055561 NA NA 18qB3 NA NA chr18 44166143 GCCxGAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.489481 0.490544 0.997832 43 0 0 8.395842 0.173913 0.02 -0.201704 19 4 546 111 60 60 0 0 AA 4.81278 16 0 448 0 KEEP + Spink5 YES AA_7 chr18 47441496 47441496 T A exonic Sema6a synonymous SNV NM_018744:c.A1380T:p.L460L exonic Sema6a synonymous SNV uc008ewa.1:c.A1380T:p.L460L exonic ENSMUSG00000019647 synonymous SNV ENSMUST00000019791:c.A1380T:p.L460L 18qC NA NA chr18 47441496 ATTxAGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 169 0 0 8.024224 0.066667 0.02 0.93971 70 5 1929 136 60 60 0 0 TT 23.457774 78 0 2116 0 KEEP - Sema6a YES AA_7 chr18 64724000 64724000 A C exonic Atp8b1 nonsynonymous SNV NM_001001488:c.T1426G:p.Y476D exonic Atp8b1 nonsynonymous SNV uc008fem.1:c.T1426G:p.Y476D exonic ENSMUSG00000039529 nonsynonymous SNV ENSMUST00000025482:c.T1426G:p.Y476D 18qE1 NA NA chr18 64724000 CATxGAT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 117 0 0 12.124773 0.118644 0.02 1.177911 52 7 1437 181 60 60 0 0 AA 13.232413 44 0 1196 0 KEEP - Atp8b1 NO AA_7 chr18 6623504 6623504 T A exonic 4921524L21Rik nonsynonymous SNV NM_027598:c.T215A:p.M72K exonic 4921524L21Rik nonsynonymous SNV uc008dzm.2:c.T215A:p.M72K exonic ENSMUSG00000039540 nonsynonymous SNV ENSMUST00000044829:c.T215A:p.M72K 18qA1 NA NA chr18 6623504 AGAxGCG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 66 1 0 8.637593 0.16 0.02 -0.219223 21 4 580 115 60 60 0 0 TT 9.624222 32 0 873 0 KEEP + 4921524L21Rik YES AA_7 chr18 6623506 6623506 C A exonic 4921524L21Rik nonsynonymous SNV NM_027598:c.C217A:p.R73S exonic 4921524L21Rik nonsynonymous SNV uc008dzm.2:c.C217A:p.R73S exonic ENSMUSG00000039540 nonsynonymous SNV ENSMUST00000044829:c.C217A:p.R73S 18qA1 NA NA chr18 6623506 ATGxGCT C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 66 1 0 8.838971 0.16 0.02 -0.219057 21 4 512 117 60 60 0 0 CC 9.611812 32 0 778 0 KEEP + 4921524L21Rik NO AA_7 chr18 76297488 76297488 A T exonic Zbtb7c nonsynonymous SNV NM_145356:c.A992T:p.Y331F exonic Zbtb7c nonsynonymous SNV uc008fqk.1:c.A992T:p.Y331F exonic ENSMUSG00000044646 nonsynonymous SNV ENSMUST00000167921:c.A992T:p.Y331F 18qE3 NA NA chr18 76297488 ACTxTGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 137 1 0 12.957736 0.106061 0.02 1.018678 59 7 1581 193 60 60 0 0 AA 18.944268 63 0 1676 0 KEEP + Zbtb7c YES AA_7 chr19 10487818 10487818 T A intronic Syt7 NA NA intronic Syt7 NA NA intronic ENSMUSG00000024743 NA NA 19qA NA NA chr19 10487818 GTGxGTC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 413 7 0 22.935461 0.095238 0.02 2.384028 114 12 3081 344 60 60 0 0 TT 67.629378 225 0 5955 0 KEEP + Syt7 YES AA_7 chr19 17522020 17522020 T A exonic Pcsk5 synonymous SNV NM_001190483:c.A4908T:p.A1636A exonic Pcsk5 synonymous SNV uc008gxp.2:c.A4908T:p.A1636A exonic ENSMUSG00000024713 synonymous SNV ENSMUST00000025618:c.A4908T:p.A1636A 19qB NA NA chr19 17522020 GTCxGCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.668523 0.668523 1 94 0 0 8.360653 0.137931 0.02 -0.254115 25 4 686 115 60 60 0 0 TT 15.640804 52 0 1445 0 KEEP - Pcsk5 YES AA_7 chr19 29829174 29829174 T C exonic 9930021J03Rik synonymous SNV NM_172836:c.A1128G:p.K376K exonic 9930021J03Rik synonymous SNV uc008hdy.2:c.A1128G:p.K376K exonic ENSMUSG00000079351 synonymous SNV ENSMUST00000112564:c.A570G:p.K190K 19qC1 NA NA chr19 29829174 CACxTTC T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 81 0 0 12.294239 0.133333 0.02 -0.394625 39 6 1100 171 60 60 0 0 TT 9.323512 31 0 855 0 KEEP - 9930021J03Rik NO AA_7 chr19 34151356 34151356 A T intronic Lipn NA NA intronic Lipn NA NA intronic ENSMUSG00000024770 NA NA 19qC1 NA NA chr19 34151356 TATxGAA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 75 0 0 15.242344 0.194444 0.02 -0.315632 29 7 784 196 60 60 0 0 AA 10.224514 34 0 912 0 KEEP + Lipn YES AA_7 chr19 36808707 36808707 A C exonic Ppp1r3c nonsynonymous SNV NM_016854:c.T152G:p.F51C exonic Ppp1r3c nonsynonymous SNV uc008hhs.1:c.T152G:p.F51C exonic ENSMUSG00000067279 nonsynonymous SNV ENSMUST00000087321:c.T152G:p.F51C 19qC2 NA NA chr19 36808707 ACAxAAT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 61 0 0 24.340801 0.37037 0.02 -0.23676 17 10 476 273 60 60 0 0 AA 9.625452 32 0 894 0 KEEP - Ppp1r3c NO AA_7 chr19 38957164 38957164 A T exonic Tbc1d12 nonsynonymous SNV NM_145952:c.A880T:p.T294S exonic Tbc1d12 nonsynonymous SNV uc008hjs.1:c.A880T:p.T294S exonic ENSMUSG00000048720 nonsynonymous SNV ENSMUST00000037302:c.A880T:p.T294S 19qC3 NA NA chr19 38957164 CGCxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 68 0 0 14.180326 0.233333 0.02 -0.261462 23 7 608 179 60 60 0 0 AA 11.122933 37 0 978 0 KEEP + Tbc1d12 YES AA_7 chr19 42852682 42852682 T A exonic Hps1 nonsynonymous SNV NM_019424:c.A47T:p.Y16F exonic Hps1 nonsynonymous SNV uc008hny.1:c.A47T:p.Y16F exonic ENSMUSG00000025188 nonsynonymous SNV ENSMUST00000162061:c.A47T:p.Y16F 19qC3 NA NA chr19 42852682 CAGxAGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 126 0 0 7.275911 0.085106 0.02 -0.411938 43 4 1122 113 60 60 0 0 TT 17.394936 58 0 1519 0 KEEP - Hps1 YES AA_7 chr19 44151694 44151694 T A intronic Chuk NA NA intronic Chuk NA NA intronic ENSMUSG00000025199 NA NA 19qC3 NA NA chr19 44151694 CCTxTCC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 138 0 0 17.447316 0.140845 0.02 1.073614 61 10 1705 251 60 60 0 0 TT 14.739164 49 0 1376 0 KEEP - Chuk YES AA_7 chr19 46153197 46153197 A T exonic Nolc1 nonsynonymous SNV NM_001039351:c.A125T:p.Q42L exonic Nolc1 nonsynonymous SNV uc008hsg.1:c.A125T:p.Q42L exonic ENSMUSG00000015176 nonsynonymous SNV ENSMUST00000015320:c.A125T:p.Q42L 19qC3 NA NA chr19 46153197 CACxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 129 0 0 15.208098 0.170732 0.02 -0.359326 34 7 939 200 60 60 0 0 AA 20.151054 67 0 1846 0 KEEP + Nolc1 YES AA_7 chr19 4917890 4917890 A T exonic Dpp3 nonsynonymous SNV NM_133803:c.T970A:p.S324T exonic Dpp3 nonsynonymous SNV uc008gbo.2:c.T970A:p.S324T exonic ENSMUSG00000063904 nonsynonymous SNV ENSMUST00000025851:c.T970A:p.S324T 19qA NA NA chr19 4917890 GGGxGCC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 99 0 0 17.499151 0.275862 0.02 -0.254295 21 8 603 211 60 60 0 0 AA 14.090384 47 0 1271 0 KEEP - Dpp3 YES AA_7 chr19 53692644 53692644 A T intronic Smc3 NA NA intronic Smc3 NA NA intronic ENSMUSG00000024974 NA NA 19qD2 NA NA chr19 53692644 GTCxATT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 99 0 0 6.7397 0.083333 0.02 -0.420916 44 4 1235 108 60 60 0 0 AA 13.233926 44 0 1219 0 KEEP + Smc3 YES AA_7 chr19 8460844 8460844 A C intronic Slc22a30 NA NA intronic C730048C13Rik NA NA intronic ENSMUSG00000052562 NA NA 19qA "Score=0.974914;Name=No.72589,chr19:8179867" NA chr19 8460844 CACxGAA A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 306 0 9 16.731133 0.079365 0.02 2.081059 116 10 3253 271 60 60 0 0 AA 40.904395 136 0 3739 0 KEEP - Slc22a30 NO AA_7 chr19 8684409 8684409 A T exonic Slc22a8 nonsynonymous SNV NM_001164634:c.A1342T:p.I448F exonic Slc22a8 nonsynonymous SNV uc008gmd.2:c.A1342T:p.I448F exonic ENSMUSG00000063796 nonsynonymous SNV ENSMUST00000170817:c.A1342T:p.I448F 19qA NA NA chr19 8684409 GGTxTCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 179 0 0 8.850047 0.067568 0.02 1.046488 69 5 1816 144 60 60 0 0 AA 24.628786 82 0 2132 0 KEEP + Slc22a8 YES AA_7 chr19 8886192 8886192 T A UTR3 Ttc9c NA NA UTR3 Ttc9c NA NA UTR3 ENSMUSG00000071660 NA NA 19qA NA NA chr19 8886192 TGCxTGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781006 0.78106 0.999931 65 0 0 10.124115 0.147059 0.02 -0.298168 29 5 828 139 60 60 0 0 TT 7.519133 25 0 696 0 KEEP - Ttc9c YES AA_7 chr1 108683292 108683292 T A exonic Vps4b nonsynonymous SNV NM_009190:c.A352T:p.N118Y exonic Vps4b nonsynonymous SNV uc007cgz.2:c.A352T:p.N118Y exonic ENSMUSG00000009907 nonsynonymous SNV ENSMUST00000094646:c.A352T:p.N118Y 1qE2.1 NA NA chr1 108683292 GATxCTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 170 0 0 9.766044 0.105263 0.02 1.195474 51 6 1442 152 60 60 0 0 TT 23.461807 78 0 2175 0 KEEP - Vps4b YES AA_7 chr1 120316389 120316389 A T exonic Clasp1 nonsynonymous SNV NM_001081276:c.A89T:p.Y30F exonic Clasp1 nonsynonymous SNV uc007cid.1:c.A89T:p.Y30F exonic ENSMUSG00000064302 nonsynonymous SNV ENSMUST00000049404:c.A89T:p.Y30F 1qE2.3 NA NA chr1 120316389 ACTxTTT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.79851 0.800245 0.997832 55 2 0 7.811954 0.114286 0.02 -0.306869 31 4 828 113 60 60 0 0 AA 4.81155 16 0 428 0 KEEP + Clasp1 YES AA_7 chr1 12862095 12862095 A T exonic Slco5a1 nonsynonymous SNV NM_172841:c.T2407A:p.F803I exonic Slco5a1 nonsynonymous SNV uc007aif.1:c.T2407A:p.F803I exonic ENSMUSG00000025938 nonsynonymous SNV ENSMUST00000115403:c.T2407A:p.F803I 1qA3 NA NA chr1 12862095 TGAxGGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 105 0 0 9.225648 0.108696 0.02 -0.403401 41 5 1169 137 60 60 0 0 AA 13.231905 44 0 1214 0 KEEP - Slco5a1 YES AA_7 chr1 136085835 136085835 C T exonic Chi3l1 nonsynonymous SNV NM_007695:c.C983T:p.A328V exonic Chi3l1 nonsynonymous SNV uc007crg.2:c.C983T:p.A328V exonic ENSMUSG00000064246 nonsynonymous SNV ENSMUST00000082060:c.C983T:p.A328V 1qE4 NA NA chr1 136085835 TCGxTAC C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 82 0 0 12.751894 0.2 0.02 -0.262601 24 6 637 164 60 60 0 0 CC 13.236321 44 0 1261 0 KEEP + Chi3l1 NO AA_7 chr1 136782986 136782986 T A intronic Ppp1r12b NA NA intronic Ppp1r12b NA NA intronic ENSMUSG00000073557 NA NA 1qE4 NA NA chr1 136782986 ACCxCTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.99986 39 0 0 11.738584 0.333333 0.02 -0.140309 10 5 289 135 60 60 0 0 TT 5.715033 19 0 530 0 KEEP - Ppp1r12b YES AA_7 chr1 137971671 137971671 C T exonic Cacna1s nonsynonymous SNV NM_001081023:c.C928T:p.P310S exonic Cacna1s nonsynonymous SNV uc007cuf.1:c.C928T:p.P310S exonic ENSMUSG00000026407 nonsynonymous SNV ENSMUST00000161865:c.C187T:p.P63S 1qE4 NA NA chr1 137971671 TGGxCCT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 158 0 0 30.263568 0.240741 0.02 1.221774 41 13 1120 370 60 60 0 0 CC 24.936122 83 0 2238 0 KEEP + Cacna1s NO AA_7 chr1 146601127 146601127 T G exonic Rgs18 nonsynonymous SNV NM_022881:c.A523C:p.T175P exonic Rgs18 nonsynonymous SNV uc007cxl.1:c.A523C:p.T175P exonic ENSMUSG00000026357 nonsynonymous SNV ENSMUST00000027603:c.A523C:p.T175P 1qF NA NA chr1 146601127 CCGxATC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423459 0.423478 0.999957 51 2 0 8.47023 0.190476 0.02 -0.184129 17 4 458 110 60 60 0 0 TT 7.818298 26 0 691 0 KEEP - Rgs18 NO AA_7 chr1 146601128 146601128 A T exonic Rgs18 nonsynonymous SNV NM_022881:c.T522A:p.D174E exonic Rgs18 nonsynonymous SNV uc007cxl.1:c.T522A:p.D174E exonic ENSMUSG00000026357 nonsynonymous SNV ENSMUST00000027603:c.T522A:p.D174E 1qF NA NA chr1 146601128 CGTxTCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423459 0.423478 0.999957 51 2 0 8.470208 0.190476 0.02 -0.18413 17 4 459 110 60 60 0 0 AA 7.818666 26 0 695 0 KEEP - Rgs18 YES AA_7 chr1 151948170 151948170 A G exonic Ptgs2 nonsynonymous SNV NM_011198:c.A119G:p.Y40C exonic Ptgs2 nonsynonymous SNV uc007cxv.1:c.A119G:p.Y40C exonic ENSMUSG00000032487 nonsynonymous SNV ENSMUST00000035065:c.A119G:p.Y40C 1qG1 NA NA chr1 151948170 AGTxTAA A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 122 0 0 7.0034 0.081633 0.02 -0.429195 45 4 1186 111 60 60 0 0 AA 15.636774 52 0 1386 0 KEEP + Ptgs2 NO AA_7 chr1 158256260 158256260 T A exonic Nphs2 synonymous SNV NM_130456:c.T1149A:p.P383P exonic Nphs2 synonymous SNV uc007dch.1:c.T1149A:p.P383P exonic ENSMUSG00000026602 synonymous SNV ENSMUST00000027896:c.T1149A:p.P383P 1qG3 NA NA chr1 158256260 TCCxATG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739592 0.739671 0.999892 62 0 0 10.166975 0.15625 0.02 -0.280582 27 5 739 138 60 60 0 0 TT 6.91716 23 0 626 0 KEEP + Nphs2 YES AA_7 chr1 167409673 167409673 G T exonic Mpc2 nonsynonymous SNV NM_027430:c.G311T:p.G104V exonic Brp44 nonsynonymous SNV uc007djd.1:c.G311T:p.G104V exonic ENSMUSG00000026568 nonsynonymous SNV ENSMUST00000027853:c.G311T:p.G104V 1qH2.3 NA NA chr1 167409673 TGGxGTC G T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 91 0 0 26.684488 0.366667 0.02 -0.263065 19 11 537 300 60 60 0 0 GG 14.738971 49 0 1371 0 KEEP + Mpc2 NO AA_7 chr1 172745625 172745625 T A exonic Atf6 synonymous SNV NM_001081304:c.A1077T:p.P359P exonic Atf6 synonymous SNV uc007dmj.1:c.A1077T:p.P359P exonic ENSMUSG00000026663 synonymous SNV ENSMUST00000027974:c.A1143T:p.P381P 1qH3 NA NA chr1 172745625 ACTxGGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 168 0 0 9.110762 0.079365 0.02 1.142773 58 5 1622 143 60 60 0 0 TT 24.663196 82 0 2257 0 KEEP - Atf6 YES AA_7 chr1 174060830 174060830 A T exonic Pex19 nonsynonymous SNV NM_001159525:c.A244T:p.I82F exonic Pex19 nonsynonymous SNV uc011wwj.1:c.A244T:p.I82F exonic ENSMUSG00000003464 nonsynonymous SNV ENSMUST00000111252:c.A244T:p.I82F 1qH3 NA NA chr1 174060830 CCCxTCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 96 0 0 10.245948 0.125 0.02 -0.350703 35 5 957 144 60 60 0 0 AA 12.918732 43 0 1140 0 KEEP + Pex19 YES AA_7 chr1 174157498 174157498 T A exonic Atp1a4 nonsynonymous SNV NM_013734:c.A2809T:p.I937F exonic Atp1a4 nonsynonymous SNV uc011wwk.1:c.A2809T:p.I937F exonic ENSMUSG00000007107 nonsynonymous SNV ENSMUST00000111243:c.A2809T:p.I937F 1qH3 NA NA chr1 174157498 CAAxCAC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 111 0 0 7.690288 0.092593 0.02 1.221992 49 5 1357 125 60 60 0 0 TT 13.219887 44 0 1187 0 KEEP - Atp1a4 YES AA_7 chr1 174216421 174216421 T C exonic Atp1a2 nonsynonymous SNV NM_178405:c.A1124G:p.K375R exonic Atp1a2 nonsynonymous SNV uc007dqc.1:c.A1124G:p.K375R exonic ENSMUSG00000007097 nonsynonymous SNV ENSMUST00000085913:c.A1124G:p.K375R 1qH3 NA NA chr1 174216421 GTCxTGT T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 412 0 4 94.870536 0.253086 0.02 3.647517 121 41 3424 1151 60 70 0 0 TT 55.577479 193 1 5396 23 KEEP - Atp1a2 NO AA_7 chr1 177595678 177595678 G A exonic Opn3 synonymous SNV NM_010098:c.C450T:p.S150S exonic Opn3 synonymous SNV uc007dtq.1:c.C450T:p.S150S exonic ENSMUSG00000026525 synonymous SNV ENSMUST00000027809:c.C450T:p.S150S 1qH4 NA NA chr1 177595678 CCAxGAA G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668451 0.668523 0.999892 57 1 0 10.499423 0.172414 0.02 -0.254308 24 5 676 139 60 60 0 0 GG 6.918091 23 0 645 0 KEEP - Opn3 NO AA_7 chr1 182618183 182618183 C T exonic Lin9 synonymous SNV NM_001103182:c.C1338T:p.A446A exonic "Bara,Lin9" synonymous SNV uc007dwn.1:c.C276T:p.A92A exonic ENSMUSG00000058729 synonymous SNV ENSMUST00000085803:c.C1338T:p.A446A 1qH4 NA NA chr1 182618183 AGCxAAC C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 80 0 0 7.836395 0.129032 0.02 -0.280569 27 4 756 111 60 60 0 0 CC 11.73128 39 0 1100 0 KEEP + Lin9 NO AA_7 chr1 186729493 186729493 T A exonic Mark1 nonsynonymous SNV NM_145515:c.A1777T:p.S593C exonic Mark1 nonsynonymous SNV uc007dyt.2:c.A1777T:p.S593C exonic ENSMUSG00000026620 nonsynonymous SNV ENSMUST00000027929:c.A1777T:p.S593C 1qH5 NA NA chr1 186729493 TGCxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 76 0 0 7.960224 0.105263 0.02 -0.333223 34 4 943 116 60 60 0 0 TT 9.909751 33 0 889 0 KEEP - Mark1 YES AA_7 chr1 192784125 192784125 T G exonic Vash2 nonsynonymous SNV NM_144879:c.A731C:p.K244T exonic Vash2 nonsynonymous SNV uc007ebr.2:c.A731C:p.K244T exonic ENSMUSG00000037568 nonsynonymous SNV ENSMUST00000047409:c.A731C:p.K244T 1qH6 NA NA chr1 192784125 TTCxTAA T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 199 0 0 37.911045 0.25 0.02 0.826153 66 22 1847 489 60 60 0 0 TT 24.327565 81 0 2217 0 KEEP - Vash2 NO AA_7 chr1 194946736 194946736 G A exonic Diexf nonsynonymous SNV NM_145415:c.C866T:p.P289L exonic AA408296 nonsynonymous SNV uc007edw.1:c.C866T:p.P289L exonic ENSMUSG00000016181 nonsynonymous SNV ENSMUST00000085555:c.C866T:p.P289L 1qH6 NA NA chr1 194946736 AGCxGGG G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 100 2 0 7.861869 0.105263 0.02 -0.332982 34 4 844 115 60 60 0 0 GG 15.024257 50 0 1267 0 KEEP - Diexf NO AA_7 chr1 195156977 195156977 A T exonic Lamb3 nonsynonymous SNV NM_001277928:c.A1315T:p.M439L exonic Lamb3 nonsynonymous SNV uc007eek.1:c.A1315T:p.M439L exonic ENSMUSG00000026639 nonsynonymous SNV ENSMUST00000085541:c.A262T:p.M88L 1qH6 NA NA chr1 195156977 GATxTGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 106 0 0 7.336558 0.093023 0.02 -0.377023 39 4 1049 112 60 60 0 0 AA 14.687626 49 0 1260 0 KEEP + Lamb3 YES AA_7 chr1 22417688 22417688 T G intronic Rims1 NA NA intronic Rims1 NA NA intronic ENSMUSG00000041670 NA NA 1qA5 NA NA chr1 22417688 AACxTCA T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 159 0 0 44.064793 0.276316 0.02 0.83364 55 21 1561 535 60 60 0 0 TT 18.328035 61 0 1681 0 KEEP - Rims1 NO AA_7 chr1 26740558 26740558 A T exonic 4931408C20Rik synonymous SNV NM_001033764:c.T2385A:p.L795L exonic 4931408C20Rik synonymous SNV uc007amz.2:c.T2385A:p.L795L exonic ENSMUSG00000073722 synonymous SNV ENSMUST00000097801:c.T2385A:p.L795L 1qA5 NA NA chr1 26740558 CCCxAGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 100 0 0 7.21433 0.086957 0.02 -0.412148 42 4 1174 112 60 60 0 0 AA 12.632709 42 0 1162 0 KEEP - 4931408C20Rik YES AA_7 chr1 36528959 36528959 A T exonic Cnnm4 nonsynonymous SNV NM_033570:c.A422T:p.N141I exonic Cnnm4 nonsynonymous SNV uc007aqg.2:c.A422T:p.N141I exonic ENSMUSG00000037408 nonsynonymous SNV ENSMUST00000045383:c.A41T:p.N14I 1qB NA NA chr1 36528959 AGAxCAT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 134 0 0 17.752497 0.138462 0.02 1.125402 56 9 1503 248 60 60 0 0 AA 17.379968 58 0 1550 0 KEEP + Cnnm4 YES AA_7 chr1 36837967 36837967 C T exonic Zap70 nonsynonymous SNV NM_009539:c.C1483T:p.R495W exonic Zap70 nonsynonymous SNV uc007arb.1:c.C340T:p.R114W exonic ENSMUSG00000026117 nonsynonymous SNV ENSMUST00000070299:c.C547T:p.R183W 1qB NA NA chr1 36837967 GCCxGGT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 208 0 0 18.466657 0.113636 0.02 0.924497 78 10 1932 272 60 60 0 0 CC 28.782022 96 0 2375 0 KEEP + Zap70 NO AA_7 chr1 38006685 38006685 C T exonic Lyg1 nonsynonymous SNV NM_027111:c.G298A:p.V100M exonic Lyg1 nonsynonymous SNV uc007asl.1:c.G298A:p.V100M exonic ENSMUSG00000026085 nonsynonymous SNV ENSMUST00000027254:c.G298A:p.V100M 1qB NA NA chr1 38006685 CCAxATA C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 182 0 0 12.727183 0.108108 0.02 0.949035 66 8 1823 198 60 60 0 0 CC 24.054975 80 0 2226 0 KEEP - Lyg1 NO AA_7 chr1 46300216 46300216 A C exonic Dnah7b nonsynonymous SNV NM_001160386:c.A8663C:p.K2888T exonic Dnahc7b nonsynonymous SNV uc007awy.1:c.A968C:p.K323T exonic ENSMUSG00000041144 nonsynonymous SNV ENSMUST00000069293:c.A8663C:p.K2888T 1qC1.1 "Score=0.945784;Name=No.178,chr1:46710264" NA chr1 46300216 ACAxGTT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 168 0 13 40.317538 0.328125 0.02 0.930288 43 21 1217 479 60 60 0 0 AA 25.266259 84 0 2341 0 KEEP + Dnah7b NO AA_7 chr1 46797622 46797622 T A intergenic "Dnah7b(dist=367227),Slc39a10(dist=66767)" NA NA intergenic "AK219219(dist=324566),BC048766(dist=51051)" NA NA intergenic "ENSMUSG00000078595(dist=114666),ENSMUSG00000025986(dist=66767)" NA NA 1qC1.1 "Score=0.93936;Name=No.199,chr1:53511208" NA chr1 46797622 TCCxGTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 184 0 10 23.210091 0.144737 0.02 1.028772 65 11 1821 316 60 60 0 0 TT 25.560027 85 0 2318 0 KEEP NA Dnah7b YES AA_7 chr1 46825888 46825888 T C intergenic "Dnah7b(dist=395493),Slc39a10(dist=38501)" NA NA intergenic "AK219219(dist=352832),BC048766(dist=22785)" NA NA intergenic "ENSMUSG00000078595(dist=142932),ENSMUSG00000025986(dist=38501)" NA NA 1qC1.1 "Score=0.943536;Name=No.200,chr1:53481113" NA chr1 46825888 AACxTAG T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 193 0 1 36.425896 0.235294 0.02 1.098909 52 16 1475 449 60 60 0 0 TT 31.28223 104 0 2908 0 KEEP NA Dnah7b NO AA_7 chr1 58705014 58705014 T A intergenic "Ndufb3(dist=52222),Gm20257(dist=4471)" NA NA intergenic "Ndufb3(dist=52222),AK079804(dist=4471)" NA NA UTR3 ENSMUSG00000059647 NA NA 1qC1.3 "Score=0.993035;Name=No.41291,chr14:74353709" NA chr1 58705014 CCTxACT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 116 1 56 6.49278 0.176471 0.02 -0.149065 14 3 382 85 29 29 0 0 TT 16.541183 55 0 1502 0 KEEP NA Ndufb3 YES AA_7 chr1 66529831 66529831 T A exonic Unc80 nonsynonymous SNV NM_175510:c.T617A:p.F206Y exonic Unc80 nonsynonymous SNV uc007bif.2:c.T617A:p.F206Y exonic ENSMUSG00000055567 nonsynonymous SNV ENSMUST00000061620:c.T617A:p.F206Y 1qC3 NA NA chr1 66529831 CCTxCCG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739575 0.739671 0.999869 63 0 0 7.577611 0.125 0.02 -0.280617 28 4 791 109 60 29 0 0 TT 6.314579 21 0 571 0 KEEP + Unc80 YES AA_7 chr1 72898623 72898623 A T exonic Igfbp2 nonsynonymous SNV NM_008342:c.A805T:p.N269Y exonic Igfbp2 nonsynonymous SNV uc007bkw.1:c.A805T:p.N269Y exonic ENSMUSG00000039323 nonsynonymous SNV ENSMUST00000047328:c.A805T:p.N269Y 1qC3 NA NA chr1 72898623 CCCxATA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 173 0 0 12.386118 0.088608 0.02 1.002485 72 7 2002 193 60 60 0 0 AA 21.350171 71 0 1906 0 KEEP + Igfbp2 YES AA_7 chr1 74619038 74619038 T C exonic Zfp142 nonsynonymous SNV NM_029888:c.A1862G:p.K621R exonic Zfp142 nonsynonymous SNV uc007bml.1:c.A1157G:p.K386R exonic ENSMUSG00000026135 nonsynonymous SNV ENSMUST00000027315:c.A2171G:p.K724R 1qC3 NA NA chr1 74619038 TACxTCC T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94174 0.941741 0.999999 86 0 0 9.824286 0.108696 0.02 -0.412135 41 5 1140 143 60 60 0 0 TT 10.527216 35 0 970 0 KEEP - Zfp142 NO AA_7 chr1 74743409 74743409 A T intronic Ttll4 NA NA intronic "Ttll4,mKIAA0173" NA NA intronic ENSMUSG00000033257 NA NA 1qC3 NA NA chr1 74743409 AACxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 111 1 0 9.775177 0.106383 0.02 -0.412109 42 5 1142 143 60 60 0 0 AA 14.736297 49 0 1326 0 KEEP + Ttll4 YES AA_7 chr1 74760230 74760230 T A exonic Cyp27a1 nonsynonymous SNV NM_024264:c.T26A:p.L9Q exonic Cyp27a1 nonsynonymous SNV uc007bna.1:c.T26A:p.L9Q exonic ENSMUSG00000026170 nonsynonymous SNV ENSMUST00000027356:c.T26A:p.L9Q 1qC3 NA NA chr1 74760230 GGCxGAG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 210 2 0 16.245277 0.103448 0.02 0.923608 78 9 2186 245 60 60 0 0 TT 28.872005 96 0 2615 0 KEEP + Cyp27a1 YES AA_7 chr1 75466338 75466338 T A exonic Asic4 synonymous SNV NM_183022:c.T948A:p.S316S exonic Accn4 synonymous SNV uc007bpg.1:c.T948A:p.S316S exonic ENSMUSG00000033007 synonymous SNV ENSMUST00000037708:c.T948A:p.S316S 1qC4 NA NA chr1 75466338 GTCxGCC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 88 0 0 10.290274 0.138889 0.02 -0.315697 31 5 878 142 60 60 0 0 TT 11.128601 37 0 1024 0 KEEP + Asic4 YES AA_7 chr1 91889756 91889756 A T exonic Asb18 nonsynonymous SNV NM_139152:c.T373A:p.C125S exonic Asb18 nonsynonymous SNV uc011wpb.1:c.T250A:p.C84S exonic;splicing "ENSMUSG00000067081;ENSMUSG00000067081(ENSMUST00000097656:exon3:c.248+2T>A,ENSMUST00000151330:exon3:c.248+2T>A)" nonsynonymous SNV ENSMUST00000113098:c.T250A:p.C84S 1qD NA NA chr1 91889756 TGCxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 181 0 0 17.142177 0.103448 0.02 0.932408 78 9 2118 254 60 60 0 0 AA 20.141908 67 0 1772 0 KEEP - Asb18 YES AA_7 chr1 94387580 94387580 A C exonic Olfr1415 nonsynonymous SNV NM_001011525:c.T751G:p.F251V exonic Olfr1415 nonsynonymous SNV uc007cbj.1:c.T751G:p.F251V exonic ENSMUSG00000057464 nonsynonymous SNV ENSMUST00000071521:c.T751G:p.F251V 1qD "Score=0.958743;Name=No.343,chr1:94376292" NA chr1 94387580 AGAxGAA A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 121 0 0 16.819836 0.204545 0.02 -0.394542 35 9 987 222 60 60 0 0 AA 19.24775 64 0 1764 0 KEEP - Olfr1415 NO AA_7 chr1 95213625 95213625 G A exonic Pask synonymous SNV NM_080850:c.C3351T:p.S1117S exonic Pask synonymous SNV uc007cdt.2:c.C3351T:p.S1117S exonic ENSMUSG00000026274 synonymous SNV ENSMUST00000027493:c.C3351T:p.S1117S 1qD NA NA chr1 95213625 CTTxGAC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 93 0 0 7.279308 0.095238 0.02 -0.368303 38 4 1070 111 60 60 0 0 GG 11.129897 37 0 1048 0 KEEP - Pask NO AA_7 chr1 95770376 95770376 A T exonic Gal3st2 nonsynonymous SNV NM_199366:c.A323T:p.Q108L exonic Gal3st2 nonsynonymous SNV uc007ces.1:c.A323T:p.Q108L exonic ENSMUSG00000034005 nonsynonymous SNV ENSMUST00000094663:c.A323T:p.Q108L 1qD "Score=0.985911;Name=No.347,chr1:95822740" NA chr1 95770376 TGCxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 222 5 99 13.409087 0.114754 0.02 1.160288 54 7 1538 195 29 36 0 0 AA 28.87665 96 0 2689 0 KEEP + Gal3st2 YES AA_7 chr2 102290572 102290572 A T exonic Fjx1 nonsynonymous SNV NM_010218:c.T1174A:p.Y392N exonic Fjx1 nonsynonymous SNV uc008lhw.1:c.T1174A:p.Y392N exonic ENSMUSG00000075012 nonsynonymous SNV ENSMUST00000099678:c.T1174A:p.Y392N 2qE2 NA NA chr2 102290572 TGTxGAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 201 0 0 7.377898 0.054348 0.02 0.889209 87 5 2340 134 60 60 0 0 AA 30.068684 100 0 2659 0 KEEP - Fjx1 YES AA_7 chr2 10464604 10464604 A T exonic Sfmbt2 nonsynonymous SNV NM_001198808:c.A1369T:p.M457L exonic Sfmbt2 nonsynonymous SNV uc008ihz.1:c.A1369T:p.M457L exonic ENSMUSG00000061186 nonsynonymous SNV ENSMUST00000114867:c.A1369T:p.M457L 2qA1 NA NA chr2 10464604 TCCxTGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 113 5 0 7.467899 0.1 0.02 -0.350734 36 4 980 112 60 60 0 0 AA 17.1424 57 0 1546 0 KEEP + Sfmbt2 YES AA_7 chr2 111098260 111098260 A T downstream Olfr1276 NA NA downstream Olfr1276 NA NA downstream ENSMUSG00000063844 NA NA 2qE3 NA NA chr2 111098260 AATxGTA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 127 0 0 15.756063 0.135593 0.02 1.177824 51 8 1454 221 60 60 0 0 AA 17.14378 57 0 1579 0 KEEP NA Olfr1276 YES AA_7 chr2 11205416 11205416 A T exonic Prkcq nonsynonymous SNV NM_008859:c.A1552T:p.I518F exonic Prkcq nonsynonymous SNV uc008iib.1:c.A1552T:p.I518F exonic ENSMUSG00000026778 nonsynonymous SNV ENSMUST00000170702:c.A823T:p.I275F 2qA1 NA NA chr2 11205416 CATxTCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 62 0 0 10.499803 0.172414 0.02 -0.254258 24 5 641 139 60 60 0 0 AA 8.119303 27 0 720 0 KEEP + Prkcq YES AA_7 chr2 120149277 120149277 T A intronic Vps39 NA NA intronic Vps39 NA NA intronic ENSMUSG00000027291 NA NA 2qE5 NA NA chr2 120149277 GACxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 106 0 0 6.96416 0.08 0.02 -0.438491 46 4 1321 111 60 60 0 0 TT 12.633224 42 0 1171 0 KEEP - Vps39 YES AA_7 chr2 120149278 120149278 G A intronic Vps39 NA NA intronic Vps39 NA NA intronic ENSMUSG00000027291 NA NA 2qE5 NA NA chr2 120149278 ACTxCTA G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 106 0 0 6.666187 0.08 0.02 -0.438463 46 4 1308 108 60 60 0 0 GG 12.927991 43 0 1212 0 KEEP - Vps39 NO AA_7 chr2 122000069 122000069 T A intronic "Patl2,Trim69" NA NA intronic "Patl2,Trim69" NA NA intronic "ENSMUSG00000027233,ENSMUSG00000033368" NA NA 2qE5 NA NA chr2 122000069 TGTxTGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 207 0 0 18.933653 0.114583 0.02 0.853755 85 11 2364 285 60 60 0 0 TT 27.069727 90 0 2495 0 KEEP + Patl2 YES AA_7 chr2 128609752 128609752 A T intronic Mertk NA NA intronic Mertk NA NA intronic ENSMUSG00000014361 NA NA 2qF1 NA NA chr2 128609752 AACxGGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 105 0 0 10.355863 0.142857 0.02 -0.306944 30 5 860 142 60 60 0 0 AA 15.640813 52 0 1449 0 KEEP + Mertk YES AA_7 chr2 12925998 12925998 A T exonic C1ql3 nonsynonymous SNV NM_153155:c.T662A:p.L221Q exonic C1ql3 nonsynonymous SNV uc008ijv.1:c.T662A:p.L221Q exonic ENSMUSG00000049630 nonsynonymous SNV ENSMUST00000061545:c.T662A:p.L221Q 2qA1 NA NA chr2 12925998 TCCxGGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 108 0 0 9.644338 0.096154 0.02 1.337535 47 5 1324 144 60 60 0 0 AA 12.633156 42 0 1171 0 KEEP - C1ql3 YES AA_7 chr2 130232943 130232943 T C UTR3 Tmem239 NA NA UTR3 4933425O20Rik NA NA exonic ENSMUSG00000049692 nonsynonymous SNV ENSMUST00000166842:c.T481C:p.S161P 2qF1 NA NA chr2 130232943 GTGxCTG T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 163 0 0 36.92586 0.266667 0.02 1.169108 44 16 1216 444 70 60 0 0 TT 26.658259 89 0 2378 0 KEEP + Tmem239 NO AA_7 chr2 130899708 130899708 A T exonic Siglec1 synonymous SNV NM_011426:c.T3969A:p.A1323A exonic Siglec1 synonymous SNV uc008mko.1:c.T3969A:p.A1323A exonic ENSMUSG00000027322 synonymous SNV ENSMUST00000028794:c.T3969A:p.A1323A 2qF1 NA NA chr2 130899708 GTAxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.580216 0.58293 0.995343 42 0 0 14.961531 0.269231 0.02 -0.227859 19 7 542 182 60 60 0 0 AA 4.210129 14 0 383 0 KEEP - Siglec1 YES AA_7 chr2 139683484 139683484 T A exonic Tasp1 nonsynonymous SNV NM_001159641:c.A1013T:p.E338V exonic Tasp1 nonsynonymous SNV uc008mpl.2:c.A1013T:p.E338V exonic ENSMUSG00000039033 nonsynonymous SNV ENSMUST00000099304:c.A1013T:p.E338V 2qF3 NA NA chr2 139683484 CTCxCTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 112 0 0 6.938091 0.083333 0.02 -0.429728 44 4 1271 110 60 60 0 0 TT 12.03217 40 0 1125 0 KEEP - Tasp1 YES AA_7 chr2 150511370 150511370 A T exonic Vsx1 nonsynonymous SNV NM_054068:c.T608A:p.M203K exonic Vsx1 nonsynonymous SNV uc008muh.1:c.T608A:p.M203K exonic ENSMUSG00000033080 nonsynonymous SNV ENSMUST00000046095:c.T608A:p.M203K 2qG3 NA NA chr2 150511370 AGCxTTT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 94 0 0 20.316976 0.204545 0.02 -0.385808 35 9 949 257 60 60 0 0 AA 12.027822 40 0 1070 0 KEEP - Vsx1 YES AA_7 chr2 154037299 154037299 A T exonic Bpifb1 nonsynonymous SNV NM_001012392:c.A724T:p.N242Y exonic U46068 nonsynonymous SNV uc008niw.1:c.A724T:p.N242Y exonic ENSMUSG00000027485 nonsynonymous SNV ENSMUST00000028987:c.A724T:p.N242Y 2qH1 NA NA chr2 154037299 AGTxATA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 182 0 0 16.291439 0.104651 0.02 0.941127 77 9 2141 245 60 60 0 0 AA 20.252901 77 1 2091 27 KEEP + Bpifb1 YES AA_7 chr2 157013950 157013950 T A intronic Rbl1 NA NA intronic Rbl1 NA NA intronic ENSMUSG00000027641 NA NA 2qH1 NA NA chr2 157013950 TTCxCTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 259 2 0 18.569414 0.1 0.02 0.720422 90 10 2559 279 60 60 0 0 TT 38.501137 128 0 3577 0 KEEP - Rbl1 YES AA_7 chr2 157095176 157095176 A T intronic Mroh8 NA NA intronic 4922505G16Rik NA NA intronic ENSMUSG00000074627 NA NA 2qH1 NA NA chr2 157095176 TATxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 81 2 0 10.341714 0.16129 0.02 -0.271813 26 5 704 139 60 60 0 0 AA 13.230319 44 0 1170 0 KEEP - Mroh8 YES AA_7 chr2 16049621 16049621 T A intergenic "Arl5b(dist=1048803),Plxdc2(dist=228328)" NA NA intergenic "Arl5b(dist=1048803),Plxdc2(dist=228328)" NA NA exonic ENSMUSG00000075520 nonsynonymous SNV ENSMUST00000146205:c.T664A:p.S222T 2qA2 NA NA chr2 16049621 CCCxCTC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 102 0 0 15.767223 0.150943 0.02 1.133718 45 8 1237 217 60 60 0 0 TT 12.031184 40 0 1109 0 KEEP NA Arl5b YES AA_7 chr2 172818513 172818513 A T exonic Spo11 nonsynonymous SNV NM_001083959:c.A1025T:p.K342M exonic Spo11 nonsynonymous SNV uc008ode.1:c.A986T:p.K329M exonic ENSMUSG00000005883 nonsynonymous SNV ENSMUST00000109125:c.A986T:p.K329M 2qH3 NA NA chr2 172818513 TGAxGGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.899314 0.899314 1 132 0 0 7.279232 0.095238 0.02 -0.368318 38 4 1079 111 60 60 0 0 AA 19.24965 64 0 1789 0 KEEP + Spo11 YES AA_7 chr2 172933698 172933698 A T exonic Ctcfl nonsynonymous SNV NM_001081387:c.T1166A:p.M389K exonic Ctcfl nonsynonymous SNV uc008odi.1:c.T1166A:p.M389K exonic ENSMUSG00000070495 nonsynonymous SNV ENSMUST00000094287:c.T1166A:p.M389K 2qH3 NA NA chr2 172933698 CTCxTGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 170 0 0 16.053774 0.125 0.02 1.134058 56 8 1520 227 60 60 0 0 AA 22.856653 76 0 2062 0 KEEP - Ctcfl YES AA_7 chr2 180942468 180942468 C G exonic Srms nonsynonymous SNV NM_011481:c.G847C:p.A283P exonic Srms nonsynonymous SNV uc008oll.1:c.G847C:p.A283P exonic ENSMUSG00000027579 nonsynonymous SNV ENSMUST00000016498:c.G847C:p.A283P 2qH4 NA NA chr2 180942468 CTGxCAG C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 241 0 0 7.654673 0.051546 0.02 0.845065 92 5 2532 138 60 60 0 0 CC 34.269339 114 0 3153 0 KEEP - Srms NO AA_7 chr2 181322691 181322691 G A exonic Znf512b stopgain SNV NM_001164597:c.C1723T:p.Q575X exonic Znf512b stopgain SNV uc012cms.1:c.C1816T:p.Q606X exonic ENSMUSG00000000823 stopgain SNV ENSMUST00000128553:c.C1753T:p.Q585X 2qH4 NA NA chr2 181322691 CTTxGGG G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 361 2 0 21.711382 0.083333 0.02 2.127647 132 12 3747 339 60 60 0 0 GG 48.114321 160 0 4528 0 KEEP - Znf512b NO AA_7 chr2 25301273 25301273 A T intronic Abca2 NA NA intronic Abca2 NA NA intronic ENSMUSG00000026944 NA NA 2qA3 NA NA chr2 25301273 TACxCAC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.420544 0.423478 0.993072 32 0 0 8.969968 0.190476 0.02 -0.184128 17 4 455 115 60 60 0 0 AA 3.305816 11 0 285 0 KEEP + Abca2 YES AA_7 chr2 30049657 30049657 G A intronic Ccbl1 NA NA UTR5 Ccbl1 NA NA UTR5 ENSMUSG00000039648 NA NA 2qB NA NA chr2 30049657 CCAxTGT G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 82 2 0 11.804357 0.171429 0.02 -0.306862 29 6 778 159 60 60 0 0 GG 12.318645 41 0 1100 0 KEEP - Ccbl1 NO AA_7 chr2 31279980 31279980 A T intergenic "Ncs1(dist=128989),Ass1(dist=45810)" NA NA intergenic "Ncs1(dist=128989),Hmcn2(dist=13602)" NA NA exonic ENSMUSG00000055632 synonymous SNV ENSMUST00000113532:c.A10929T:p.P3643P 2qB NA NA chr2 31279980 GCCxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999999 84 0 0 7.215773 0.102564 0.02 -0.341822 35 4 985 109 60 60 0 0 AA 10.523525 35 0 970 0 KEEP NA Ncs1 YES AA_7 chr2 32195932 32195932 T G intronic Dnm1 NA NA intronic Dnm1 NA NA intronic ENSMUSG00000026825 NA NA 2qB NA NA chr2 32195932 TCCxCAC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 88 0 0 12.040618 0.2 0.02 -0.306861 28 7 809 163 60 60 0 0 TT 11.112275 37 0 1004 0 KEEP - Dnm1 NO AA_7 chr2 34708150 34708150 T G exonic Psmd5 nonsynonymous SNV NM_080554:c.A1461C:p.E487D exonic Psmd5 nonsynonymous SNV uc008jje.1:c.A1461C:p.E487D exonic ENSMUSG00000026869 nonsynonymous SNV ENSMUST00000028225:c.A1461C:p.E487D 2qB NA NA chr2 34708150 ACCxTCA T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 126 0 0 16.255072 0.145161 0.02 0.956371 53 9 1494 231 60 60 0 0 TT 16.242704 54 0 1508 0 KEEP - Psmd5 NO AA_7 chr2 34882015 34882015 A T intronic Hc NA NA intronic Hc NA NA intronic ENSMUSG00000026874 NA NA 2qB NA NA chr2 34882015 TCCxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 211 2 0 33.988265 0.189873 0.02 1.100763 64 15 1782 435 60 60 0 0 AA 29.173261 97 0 2645 0 KEEP - Hc YES AA_7 chr2 36642470 36642470 T A exonic Olfr348 nonsynonymous SNV NM_146944:c.T424A:p.C142S exonic Olfr348 nonsynonymous SNV uc008jlw.1:c.T424A:p.C142S exonic ENSMUSG00000049315 nonsynonymous SNV ENSMUST00000056865:c.T424A:p.C142S 2qB NA NA chr2 36642470 ATCxGTA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 162 0 0 26.461158 0.132653 0.02 0.934676 85 13 2363 369 60 60 0 0 TT 17.144458 57 0 1580 0 KEEP + Olfr348 YES AA_7 chr2 36649342 36649342 T A exonic Olfr50 nonsynonymous SNV NM_146946:c.T585A:p.N195K exonic Olfr50 nonsynonymous SNV uc008jlx.1:c.T585A:p.N195K exonic ENSMUSG00000061900 nonsynonymous SNV ENSMUST00000072114:c.T585A:p.N195K 2qB NA NA chr2 36649342 CAAxGAA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 208 0 0 13.617507 0.065574 0.02 2.321404 114 8 3118 226 60 60 0 0 TT 21.050878 70 0 1889 0 KEEP + Olfr50 YES AA_7 chr2 36649344 36649344 A T exonic Olfr50 nonsynonymous SNV NM_146946:c.A587T:p.E196V exonic Olfr50 nonsynonymous SNV uc008jlx.1:c.A587T:p.E196V exonic ENSMUSG00000061900 nonsynonymous SNV ENSMUST00000072114:c.A587T:p.E196V 2qB NA NA chr2 36649344 ATGxACT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 207 0 0 10.728744 0.057377 0.02 2.222798 115 7 3235 190 60 60 0 0 AA 20.153108 67 0 1869 0 KEEP + Olfr50 YES AA_7 chr2 40735036 40735036 A T exonic Lrp1b nonsynonymous SNV NM_053011:c.T8470A:p.C2824S exonic Lrp1b nonsynonymous SNV uc008jon.1:c.T8470A:p.C2824S exonic ENSMUSG00000049252 nonsynonymous SNV ENSMUST00000052550:c.T8563A:p.C2855S 2qB NA NA chr2 40735036 CACxGAC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 124 0 0 19.10329 0.157895 0.02 1.392306 48 9 1371 256 60 60 0 0 AA 15.036266 50 0 1374 0 KEEP - Lrp1b YES AA_7 chr2 44098652 44098652 A T exonic Arhgap15 nonsynonymous SNV NM_153820:c.A1049T:p.Q350L exonic Arhgap15 nonsynonymous SNV uc008jow.1:c.A1049T:p.Q350L exonic ENSMUSG00000049744 nonsynonymous SNV ENSMUST00000055776:c.A1049T:p.Q350L 2qB NA NA chr2 44098652 GCCxGTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 0.999999 89 4 0 14.175454 0.179487 0.02 -0.341961 32 7 896 188 60 60 0 0 AA 10.828407 36 0 1003 0 KEEP + Arhgap15 YES AA_7 chr2 52092699 52092699 C G intronic Neb NA NA intronic Neb NA NA intronic ENSMUSG00000026950 NA NA 2qC1.1 NA NA chr2 52092699 CAGxCAA C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.714798 0.717315 0.99649 49 0 0 15.450745 0.225806 0.02 -0.271845 24 7 682 193 60 60 0 0 CC 4.512111 15 0 423 0 KEEP - Neb NO AA_7 chr2 64755250 64755250 T A intronic Grb14 NA NA intronic Grb14 NA NA intronic ENSMUSG00000026888 NA NA 2qC1.3 NA NA chr2 64755250 TGCxGGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999998 82 0 0 9.624992 0.108696 0.02 -0.403319 41 5 1135 141 60 60 0 0 TT 9.925495 33 0 911 0 KEEP - Grb14 YES AA_7 chr2 66157571 66157571 A T exonic Scn1a nonsynonymous SNV NM_018733:c.T2785A:p.S929T exonic Scn1a nonsynonymous SNV uc008jwz.1:c.T2785A:p.S929T exonic ENSMUSG00000064329 nonsynonymous SNV ENSMUST00000077489:c.T2785A:p.S929T 2qC1.3 NA NA chr2 66157571 ACGxGTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 152 0 0 10.684543 0.092308 0.02 1.125197 59 6 1689 165 60 60 0 0 AA 21.314005 71 0 1925 0 KEEP - Scn1a YES AA_7 chr2 67345067 67345067 A T intronic Xirp2 NA NA intronic Xirp2 NA NA ncRNA_intronic ENSMUSG00000087467 NA NA 2qC1.3 NA NA chr2 67345067 CTCxCTA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 70 0 0 12.802816 0.171429 0.02 -0.306906 29 6 802 169 60 60 0 0 AA 9.624282 32 0 874 0 KEEP + Xirp2 YES AA_7 chr2 67353104 67353104 A T exonic Xirp2 nonsynonymous SNV NM_001024618:c.A7631T:p.Q2544L exonic Xirp2 nonsynonymous SNV uc012bwn.1:c.A6974T:p.Q2325L exonic ENSMUSG00000027022 nonsynonymous SNV ENSMUST00000028410:c.A7631T:p.Q2544L 2qC1.3 NA NA chr2 67353104 AGCxAGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.38738 0.387407 0.999931 49 0 0 8.364283 0.2 0.02 -0.175376 16 4 447 108 60 60 0 0 AA 7.518931 25 0 683 0 KEEP + Xirp2 YES AA_7 chr2 69307731 69307731 T A intronic Lrp2 NA NA intronic Lrp2 NA NA intronic ENSMUSG00000027070 NA NA 2qC2 NA NA chr2 69307731 GTGxTAC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 198 0 0 15.70708 0.1 0.02 0.906044 81 9 2254 241 60 60 0 0 TT 24.062115 80 0 2214 0 KEEP - Lrp2 YES AA_7 chr2 75819301 75819301 T A exonic Ttc30a1 nonsynonymous SNV NM_030188:c.A494T:p.K165M exonic Ttc30a1 nonsynonymous SNV uc008kew.2:c.A494T:p.K165M exonic ENSMUSG00000075271 nonsynonymous SNV ENSMUST00000099994:c.A494T:p.K165M 2qC3 "Score=0.955838;Name=No.75181,chr2:75814226" NA chr2 75819301 TCCxTGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 339 4 30 24.108924 0.102362 0.02 2.072203 114 13 3232 361 60 60 0 0 TT 46.319366 154 0 4290 0 KEEP - Ttc30a1 YES AA_7 chr2 76730553 76730553 T A intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76730553 GACxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 136 2 0 11.295048 0.115385 0.02 1.141357 46 6 1302 165 60 60 0 0 TT 19.551505 65 0 1814 0 KEEP - Ttn YES AA_7 chr2 76770648 76770648 A T exonic Ttn synonymous SNV NM_028004:c.T9723A:p.T3241T exonic Ttn synonymous SNV uc008kfo.1:c.T9723A:p.T3241T exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000011934:c.T9723A:p.T3241T 2qC3 NA NA chr2 76770648 GCCxGTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.909065 0.909069 0.999995 93 2 0 9.879183 0.116279 0.02 -0.377062 38 5 1068 142 60 60 0 0 AA 13.524847 45 0 1227 0 KEEP - Ttn YES AA_7 chr2 79968901 79968901 G A exonic Pde1a synonymous SNV NM_016744:c.C91T:p.L31L exonic Pde1a synonymous SNV uc012bxz.1:c.C91T:p.L31L exonic ENSMUSG00000059173 synonymous SNV ENSMUST00000102654:c.C91T:p.L31L 2qC3 NA NA chr2 79968901 TCAxGCG G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 103 2 0 7.759984 0.111111 0.02 -0.315697 32 4 903 113 60 60 0 0 GG 15.936969 53 0 1492 0 KEEP - Pde1a NO AA_7 chr2 85171940 85171940 T A exonic Olfr987 synonymous SNV NM_001011785:c.A114T:p.T38T exonic Olfr987 synonymous SNV uc008kkd.1:c.A114T:p.T38T exonic ENSMUSG00000075223 synonymous SNV ENSMUST00000099929:c.A114T:p.T38T 2qD "Score=0.925932;Name=No.75220,chr2:85190438" NA chr2 85171940 GAGxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 256 0 2 30.238497 0.125 0.02 2.338308 105 15 2873 427 60 60 0 0 TT 33.969712 113 0 3027 0 KEEP - Olfr987 YES AA_7 chr2 85727734 85727734 A C exonic Olfr1023 nonsynonymous SNV NM_146587:c.A776C:p.Y259S exonic Olfr1023 nonsynonymous SNV uc008klc.1:c.A776C:p.Y259S exonic ENSMUSG00000050128 nonsynonymous SNV ENSMUST00000056408:c.A776C:p.Y259S 2qD NA NA chr2 85727734 TGTxCTT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 189 2 0 12.745565 0.079545 0.02 0.924329 81 7 2136 200 60 60 0 0 AA 27.940059 93 0 2461 0 KEEP + Olfr1023 NO AA_7 chr2 86274877 86274877 T A intergenic "Olfr1062(dist=11046),Olfr1065(dist=10293)" NA NA intergenic "Olfr1062(dist=11046),Olfr1065(dist=10293)" NA NA ncRNA_exonic ENSMUSG00000084117 NA NA 2qD "Score=0.946597;Name=No.75238,chr2:86211011" NA chr2 86274877 CAGxAGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 239 3 48 17.294043 0.102273 0.02 0.923661 79 9 2121 256 60 60 0 0 TT 34.217988 114 0 3030 0 KEEP NA Olfr1062 YES AA_7 chr2 87092250 87092250 C T exonic Olfr1115 nonsynonymous SNV NM_146297:c.C155T:p.S52F exonic Olfr1115 nonsynonymous SNV uc008knr.2:c.C155T:p.S52F exonic ENSMUSG00000070856 nonsynonymous SNV ENSMUST00000081986:c.C155T:p.S52F 2qD "Score=0.894879;Name=No.75250,chr2:87042717" NA chr2 87092250 TGTxTAT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 369 2 0 82.733203 0.235669 0.02 3.807253 120 37 3450 1023 60 60 0 0 CC 49.333826 164 0 4694 0 KEEP + Olfr1115 NO AA_7 chr2 88302024 88302024 T A exonic Olfr1183 nonsynonymous SNV NM_146529:c.T526A:p.C176S exonic Olfr1183 nonsynonymous SNV uc008kpv.1:c.T526A:p.C176S exonic ENSMUSG00000049372 nonsynonymous SNV ENSMUST00000102618:c.T526A:p.C176S 2qD NA NA chr2 88302024 TTCxGCG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 160 0 0 22.70249 0.130952 0.02 1.057638 73 11 2034 316 60 60 0 0 TT 18.045672 60 0 1651 0 KEEP + Olfr1183 YES AA_7 chr2 88432248 88432248 A C exonic Olfr1189 nonsynonymous SNV NM_146772:c.A286C:p.M96L exonic Olfr1189 nonsynonymous SNV uc008kpz.1:c.A286C:p.M96L exonic ENSMUSG00000068808 nonsynonymous SNV ENSMUST00000090700:c.A286C:p.M96L 2qD NA NA chr2 88432248 TGTxTGA A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 127 2 0 18.352948 0.12 0.02 1.037674 66 9 1753 260 60 60 0 0 AA 11.728192 39 0 1046 0 KEEP + Olfr1189 NO AA_7 chr2 88997010 88997010 T A intergenic "Olfr1223(dist=5517),Olfr1225(dist=13366)" NA NA intergenic "Olfr1223(dist=5517),Olfr1225(dist=13366)" NA NA exonic ENSMUSG00000075099 synonymous SNV ENSMUST00000099792:c.A321T:p.T107T 2qE1 NA NA chr2 88997010 CCCxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 224 0 0 20.179401 0.102804 0.02 2.452142 96 11 2714 303 60 60 0 0 TT 30.667327 102 0 2781 0 KEEP NA Olfr1223 YES AA_7 chr2 89323164 89323164 T A exonic Olfr1241 nonsynonymous SNV NM_146455:c.A127T:p.I43F exonic Olfr1241 nonsynonymous SNV uc008krn.1:c.A127T:p.I43F exonic ENSMUSG00000075086 nonsynonymous SNV ENSMUST00000099778:c.A127T:p.I43F 2qE1 NA NA chr2 89323164 CAAxGAG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.9982 0.9982 1 160 0 0 15.419864 0.108108 0.02 1.046366 66 8 1800 226 60 60 0 0 TT 21.349525 71 0 1901 0 KEEP - Olfr1241 YES AA_7 chr2 89657017 89657017 T A exonic Olfr1255 nonsynonymous SNV NM_146977:c.T533A:p.I178K exonic Olfr1255 nonsynonymous SNV uc008krz.1:c.T533A:p.I178K exonic ENSMUSG00000045148 nonsynonymous SNV ENSMUST00000057369:c.T533A:p.I178K 2qE1 NA NA chr2 89657017 TCAxAGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 181 3 12 7.927405 0.066667 0.02 1.037664 70 5 1875 135 60 60 0 0 TT 25.558291 85 0 2245 0 KEEP + Olfr1255 YES AA_7 chr2 89818581 89818581 T G exonic Olfr1260 synonymous SNV NM_146981:c.T645G:p.S215S exonic Olfr1260 synonymous SNV uc008ksf.1:c.T645G:p.S215S exonic ENSMUSG00000042894 synonymous SNV ENSMUST00000061830:c.T645G:p.S215S 2qE1 NA NA chr2 89818581 CTCxTAT T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987942 0.987943 0.999999 104 0 0 12.068006 0.116667 0.02 0.973901 53 7 1498 181 60 60 0 0 TT 10.827456 36 0 1005 0 KEEP + Olfr1260 NO AA_7 chr3 101393866 101393866 T A exonic Atp1a1 nonsynonymous SNV NM_144900:c.A1046T:p.K349M exonic Atp1a1 nonsynonymous SNV uc008qrj.1:c.A1046T:p.K349M exonic ENSMUSG00000033161 nonsynonymous SNV ENSMUST00000036493:c.A1046T:p.K349M 3qF2.2 NA NA chr3 101393866 CGCxTGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 132 0 0 15.031611 0.117647 0.02 1.001051 60 8 1687 219 60 60 0 0 TT 13.836221 46 0 1281 0 KEEP - Atp1a1 YES AA_7 chr3 132547492 132547492 T A intronic Npnt NA NA intronic Npnt NA NA intronic ENSMUSG00000040998 NA NA 3qG3 NA NA chr3 132547492 ACGxATA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 93 0 0 7.353886 0.088889 0.02 -0.394558 41 4 1110 113 60 60 0 0 TT 12.329472 41 0 1096 0 KEEP - Npnt YES AA_7 chr3 134885196 134885196 G T exonic Cenpe synonymous SNV NM_173762:c.G750T:p.V250V exonic Cenpe synonymous SNV uc008rkz.1:c.G750T:p.V250V exonic ENSMUSG00000045328 synonymous SNV ENSMUST00000062893:c.G750T:p.V250V 3qG3 NA NA chr3 134885196 TGTxCGA G T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 92 0 0 16.163597 0.233333 0.02 -0.263084 23 7 656 199 70 60 0 0 GG 13.236114 44 0 1253 0 KEEP + Cenpe NO AA_7 chr3 134885197 134885197 C T exonic Cenpe stopgain SNV NM_173762:c.C751T:p.R251X exonic Cenpe stopgain SNV uc008rkz.1:c.C751T:p.R251X exonic ENSMUSG00000045328 stopgain SNV ENSMUST00000062893:c.C751T:p.R251X 3qG3 NA NA chr3 134885197 GTGxGAT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 94 0 0 18.56407 0.266667 0.02 -0.262999 22 8 579 223 60 60 0 0 CC 13.528777 45 0 1185 0 KEEP + Cenpe NO AA_7 chr3 137819866 137819866 A T exonic Trmt10a stopgain SNV NM_175389:c.A952T:p.K318X exonic Rg9mtd2 stopgain SNV uc008rmy.1:c.A952T:p.K318X exonic ENSMUSG00000004127 stopgain SNV ENSMUST00000040321:c.A952T:p.K318X 3qG3 "Score=0.915244;Name=No.83772,chr7:19161673" NA chr3 137819866 CAGxAAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999962 0.999962 1 190 2 0 17.773821 0.1 0.02 0.72072 90 10 2506 271 60 60 0 0 AA 20.451813 68 0 1880 0 KEEP + Trmt10a YES AA_7 chr3 14481387 14481387 A T exonic Slc7a12 synonymous SNV NM_080852:c.A591T:p.S197S exonic Slc7a12 synonymous SNV uc008oqg.1:c.A591T:p.S197S exonic ENSMUSG00000039710 synonymous SNV ENSMUST00000037321:c.A591T:p.S197S 3qA1 NA NA chr3 14481387 CTCxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 119 0 0 9.558813 0.092593 0.02 1.212985 49 5 1333 144 60 60 0 0 AA 15.022498 50 0 1350 0 KEEP + Slc7a12 YES AA_7 chr3 145025518 145025518 T G exonic Col24a1 nonsynonymous SNV NM_027770:c.T2302G:p.S768A exonic Col24a1 nonsynonymous SNV uc008rqm.1:c.T2302G:p.S768A exonic ENSMUSG00000028197 nonsynonymous SNV ENSMUST00000029848:c.T2302G:p.S768A 3qH2 NA NA chr3 145025518 AAGxCAG T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 134 1 0 23.431294 0.25641 0.02 -0.342004 29 10 816 283 60 60 0 0 TT 22.252588 74 0 2025 0 KEEP + Col24a1 NO AA_7 chr3 149736485 149736485 G C intergenic "Gm1653(dist=793541),Eltd1(dist=1364361)" NA NA intergenic "AK139864(dist=413127),AK081104(dist=1220605)" NA NA exonic ENSMUSG00000047676 nonsynonymous SNV ENSMUST00000057740:c.C22G:p.L8V 3qH3 "Score=0.985423;Name=No.9702,chr10:128213348" NA chr3 149736485 TCAxGAC G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 150 0 28 25.10735 0.309524 0.02 -0.367989 29 13 800 302 60 55 0 0 GG 22.856403 76 0 2112 0 KEEP NA Gm1653 NO AA_7 chr3 19870871 19870871 A T intronic Cp NA NA intronic Cp NA NA intronic ENSMUSG00000003617 NA NA 3qA2 NA NA chr3 19870871 AGCxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 198 0 0 11.241949 0.084507 0.02 1.072602 65 6 1828 173 60 60 0 0 AA 27.663248 92 0 2519 0 KEEP + Cp YES AA_7 chr3 30136949 30136949 T A exonic Mecom nonsynonymous SNV NM_021442:c.A332T:p.Y111F exonic Mecom nonsynonymous SNV uc008ouv.1:c.A332T:p.Y111F exonic ENSMUSG00000027684 nonsynonymous SNV ENSMUST00000061088:c.A299T:p.Y100F 3qA3 NA NA chr3 30136949 ATGxATG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 142 0 0 11.541781 0.105263 0.02 1.195466 51 6 1368 170 60 60 0 0 TT 19.84358 66 0 1744 0 KEEP - Mecom YES AA_7 chr3 36378419 36378419 T A exonic 1810062G17Rik nonsynonymous SNV NM_028183:c.T119A:p.L40Q intergenic "Anxa5(dist=3610),AK043581(dist=35560)" NA NA exonic ENSMUSG00000027713 nonsynonymous SNV ENSMUST00000029268:c.T119A:p.L40Q 3qB NA NA chr3 36378419 TCCxGCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 226 0 0 12.727491 0.084337 0.02 0.967387 76 7 2155 198 60 60 0 0 TT 30.378218 101 0 2809 0 KEEP NA 1810062G17Rik YES AA_7 chr3 55446817 55446817 T A exonic Nbea nonsynonymous SNV NM_030595:c.A8111T:p.Q2704L exonic Nbea nonsynonymous SNV uc008pgt.2:c.A1520T:p.Q507L exonic ENSMUSG00000027799 nonsynonymous SNV ENSMUST00000168777:c.A395T:p.Q132L 3qC NA NA chr3 55446817 ATCxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 174 0 0 18.036916 0.113924 0.02 1.002444 70 9 1970 259 60 60 0 0 TT 19.540026 65 0 1774 0 KEEP - Nbea YES AA_7 chr3 67283448 67283448 T C intronic Rarres1 NA NA intronic Rarres1 NA NA intronic ENSMUSG00000049404 NA NA 3qE1 NA NA chr3 67283448 AACxTAA T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717307 0.717315 0.999988 64 0 0 10.042517 0.16129 0.02 -0.271834 26 5 734 136 60 60 0 0 TT 8.121483 27 0 757 0 KEEP - Rarres1 NO AA_7 chr3 68499163 68499163 C T intronic Il12a NA NA intronic Il12a NA NA intronic ENSMUSG00000027776 NA NA 3qE1 NA NA chr3 68499163 AAGxACT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 361 3 0 19.326279 0.077419 0.02 3.336455 143 12 3954 319 60 60 0 0 CC 48.022852 160 0 4411 0 KEEP + Il12a NO AA_7 chr3 78873301 78873301 T A exonic Rapgef2 synonymous SNV NM_001099624:c.A3669T:p.T1223T exonic Rapgef2 synonymous SNV uc008pnl.1:c.A3459T:p.T1153T exonic ENSMUSG00000062232 synonymous SNV ENSMUST00000118100:c.A3675T:p.T1225T 3qE3 "Score=0.933594;Name=No.81660,chr3:93716143" NA chr3 78873301 CTCxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 175 4 0 29.695677 0.155556 0.02 0.905981 76 14 2148 399 60 60 0 0 TT 20.736169 69 0 1882 0 KEEP - Rapgef2 YES AA_7 chr3 8329357 8329357 T A intergenic "1700010I02Rik(dist=374470),Gm6194(dist=132030)" NA NA intergenic "AK005828(dist=374470),Gm6194(dist=132030)" NA NA intergenic "ENSMUSG00000049442(dist=113171),ENSMUSG00000065203(dist=99801)" NA NA 3qA1 "Score=0.972733;Name=No.81945,chr4:98600760" NA chr3 8329357 TCTxGGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818408 0.818465 0.999931 67 0 0 7.361203 0.111111 0.02 -0.315681 32 4 893 109 60 60 0 0 TT 7.519753 25 0 696 0 KEEP NA 1700010I02Rik YES AA_7 chr3 83570636 83570636 T A exonic Sfrp2 nonsynonymous SNV NM_009144:c.T173A:p.M58K exonic Sfrp2 nonsynonymous SNV uc008ppl.2:c.T173A:p.M58K exonic ENSMUSG00000027996 nonsynonymous SNV ENSMUST00000029625:c.T173A:p.M58K 3qE3 NA NA chr3 83570636 ACAxGCG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 89 0 0 7.761078 0.105263 0.02 -0.333163 34 4 908 114 60 60 0 0 TT 11.127048 37 0 997 0 KEEP + Sfrp2 YES AA_7 chr3 87188667 87188667 A T exonic Fcrl1 nonsynonymous SNV NM_001136236:c.A210T:p.Q70H exonic Fcrl1 nonsynonymous SNV uc008psb.2:c.A210T:p.Q70H exonic ENSMUSG00000059994 nonsynonymous SNV ENSMUST00000072480:c.A210T:p.Q70H 3qF1 NA NA chr3 87188667 ACAxCCT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 102 0 0 46.820989 0.372549 0.02 1.248329 32 19 881 524 60 60 0 0 AA 12.024718 40 0 1059 0 KEEP + Fcrl1 YES AA_7 chr3 88880140 88880140 A T exonic Ash1l nonsynonymous SNV NM_138679:c.A8726T:p.Q2909L exonic Ash1l nonsynonymous SNV uc008pxj.1:c.A8726T:p.Q2909L exonic ENSMUSG00000028053 nonsynonymous SNV ENSMUST00000090933:c.A8726T:p.Q2909L 3qF1 NA NA chr3 88880140 GCCxGAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387356 0.387407 0.999869 47 0 0 6.461858 0.15 0.02 -0.175396 17 3 485 87 60 60 0 0 AA 6.316301 21 0 581 0 KEEP + Ash1l YES AA_7 chr3 89034024 89034024 A T exonic Muc1 nonsynonymous SNV NM_013605:c.A250T:p.T84S exonic Muc1 nonsynonymous SNV uc008pyh.1:c.A250T:p.T84S exonic ENSMUSG00000042784 nonsynonymous SNV ENSMUST00000041142:c.A250T:p.T84S 3qF1 NA NA chr3 89034024 TCTxCCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 256 0 0 8.172096 0.052083 0.02 0.844805 91 5 2418 143 60 60 0 0 AA 39.688204 132 0 3489 0 KEEP + Muc1 YES AA_7 chr3 92121657 92121657 A C exonic Sprr2b nonsynonymous SNV NM_011469:c.A287C:p.K96T exonic Sprr2b nonsynonymous SNV uc008qdr.1:c.A287C:p.K96T exonic ENSMUSG00000050092 nonsynonymous SNV ENSMUST00000061038:c.A287C:p.K96T 3qF1 "Score=0.921846;Name=No.81778,chr3:92032635" NA chr3 92121657 CCAxGAA A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 398 1 0 17.062498 0.069364 0.02 3.080339 161 12 4546 302 60 60 0 0 AA 58.613973 198 1 5466 8 KEEP + Sprr2b NO AA_7 chr3 9470897 9470897 T A exonic Zfp704 stopgain SNV NM_133218:c.A1012T:p.R338X exonic Zfp704 stopgain SNV uc012cng.1:c.A541T:p.R181X exonic ENSMUSG00000040209 stopgain SNV ENSMUST00000041124:c.A1012T:p.R338X 3qA1 NA NA chr3 9470897 TTCxCTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 190 0 0 40.835244 0.215909 0.02 0.914761 69 19 1975 517 60 60 0 0 TT 23.434734 78 0 2154 0 KEEP - Zfp704 YES AA_7 chr3 95125548 95125548 T A exonic Cers2 nonsynonymous SNV NM_029789:c.T571A:p.W191R exonic Lass2 nonsynonymous SNV uc008qjj.1:c.T571A:p.W191R exonic ENSMUSG00000015714 nonsynonymous SNV ENSMUST00000015858:c.T571A:p.W191R 3qF2.1 NA NA chr3 95125548 TACxGGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 256 0 0 39.327513 0.18 0.02 0.818447 82 18 2291 512 60 60 0 0 TT 35.482059 118 0 3248 0 KEEP + Cers2 YES AA_7 chr3 95126145 95126145 A T exonic Cers2 nonsynonymous SNV NM_029789:c.A838T:p.M280L exonic Lass2 nonsynonymous SNV uc008qjj.1:c.A838T:p.M280L exonic ENSMUSG00000015714 nonsynonymous SNV ENSMUST00000015858:c.A838T:p.M280L 3qF2.1 NA NA chr3 95126145 ATCxTGC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 170 0 0 28.702999 0.155556 0.02 0.906449 76 14 2045 389 60 60 0 0 AA 20.450997 68 0 1849 0 KEEP + Cers2 YES AA_7 chr3 98517390 98517390 C T exonic Hsd3b2 nonsynonymous SNV NM_153193:c.G271A:p.V91I exonic "Hsd3b2,Zfp697" nonsynonymous SNV uc008qpv.2:c.C20T:p.T7I exonic ENSMUSG00000063730 nonsynonymous SNV ENSMUST00000065835:c.G271A:p.V91I 3qF2.2 NA NA chr3 98517390 TGAxACC C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 173 0 11 10.16449 0.088235 0.02 0.903829 62 6 1672 161 60 60 0 0 CC 22.845869 76 0 2078 0 KEEP - Hsd3b2 NO AA_7 chr4 102593610 102593610 A T intronic Sgip1 NA NA intronic Sgip1 NA NA intronic ENSMUSG00000028524 NA NA 4qC6 NA NA chr4 102593610 ATCxACT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 37 0 0 17.909121 0.368421 0.02 -0.16662 12 7 337 200 60 60 0 0 AA 5.413148 18 0 485 0 KEEP + Sgip1 YES AA_7 chr4 118589886 118589886 A T exonic Olfr1329 nonsynonymous SNV NM_001011870:c.T185A:p.F62Y exonic Olfr1329 nonsynonymous SNV uc008ula.1:c.T185A:p.F62Y exonic ENSMUSG00000073767 nonsynonymous SNV ENSMUST00000071979:c.T185A:p.F62Y 4qD2.1 "Score=0.932485;Name=No.86363,chr4:118454252" NA chr4 118589886 AAGxAGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 455 2 15 25.902586 0.104167 0.02 3.726521 129 15 3643 396 60 60 0 0 AA 73.615434 245 0 6730 0 KEEP - Olfr1329 YES AA_7 chr4 118638000 118638000 T A exonic Lao1 nonsynonymous SNV NM_133892:c.T511A:p.S171T exonic Lao1 nonsynonymous SNV uc008uld.2:c.T511A:p.S171T exonic ENSMUSG00000024903 nonsynonymous SNV ENSMUST00000025838:c.T511A:p.S171T 4qD2.1 NA NA chr4 118638000 CCCxCAG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 85 0 0 6.718334 0.102564 0.02 -0.341988 35 4 993 104 60 60 0 0 TT 12.029122 40 0 1099 0 KEEP + Lao1 YES AA_7 chr4 118638001 118638001 C T exonic Lao1 nonsynonymous SNV NM_133892:c.C512T:p.S171L exonic Lao1 nonsynonymous SNV uc008uld.2:c.C512T:p.S171L exonic ENSMUSG00000024903 nonsynonymous SNV ENSMUST00000025838:c.C512T:p.S171L 4qD2.1 NA NA chr4 118638001 CCTxAGA C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 86 0 0 9.149872 0.125 0.02 -0.350505 35 5 972 133 60 60 0 0 CC 12.032458 40 0 1142 0 KEEP + Lao1 NO AA_7 chr4 11889088 11889088 T A exonic Pdp1 synonymous SNV NM_001033453:c.A249T:p.P83P exonic Pdp1 synonymous SNV uc008rzz.1:c.A357T:p.P119P exonic ENSMUSG00000049225 synonymous SNV ENSMUST00000056050:c.A249T:p.P83P 4qA1 NA NA chr4 11889088 TTGxGGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 140 0 0 8.578653 0.078125 0.02 1.134127 59 5 1600 138 60 60 0 0 TT 18.335521 61 0 1636 0 KEEP - Pdp1 YES AA_7 chr4 119310322 119310322 T A upstream Guca2a NA NA upstream Guca2a NA NA UTR5 ENSMUSG00000023247 NA NA 4qD2.1 NA NA chr4 119310322 TAGxACT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 140 1 0 7.809861 0.108108 0.02 -0.324396 33 4 882 114 60 60 0 0 TT 24.055876 80 0 2146 0 KEEP NA Guca2a YES AA_7 chr4 119310324 119310324 C A upstream Guca2a NA NA upstream Guca2a NA NA UTR5 ENSMUSG00000023247 NA NA 4qD2.1 NA NA chr4 119310324 GTAxTGG C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 143 1 0 9.905079 0.128205 0.02 -0.341951 34 5 926 140 60 60 0 0 CC 24.061605 80 0 2209 0 KEEP NA Guca2a NO AA_7 chr4 11996544 11996544 T A intronic Tmem67 NA NA intronic Tmem67 NA NA intronic ENSMUSG00000049488 NA NA 4qA1 NA NA chr4 11996544 TCTxAGC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 63 1 0 8.619072 0.178571 0.02 -0.244861 23 5 607 119 60 60 0 0 TT 8.722992 29 0 809 0 KEEP - Tmem67 YES AA_7 chr4 129233606 129233606 A T exonic Lck nonsynonymous SNV NM_010693:c.T557A:p.L186Q exonic Lck nonsynonymous SNV uc008uxi.2:c.T557A:p.L186Q exonic ENSMUSG00000000409 nonsynonymous SNV ENSMUST00000067240:c.T557A:p.L186Q 4qD2.2 NA NA chr4 129233606 TCTxGGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 169 2 0 9.077504 0.089286 0.02 1.204152 51 5 1430 140 60 60 0 0 AA 27.971804 93 0 2568 0 KEEP - Lck YES AA_7 chr4 135318495 135318495 G A exonic Myom3 nonsynonymous SNV NM_001085509:c.G61A:p.V21I exonic Myom3 nonsynonymous SNV uc008vgy.1:c.G61A:p.V21I exonic ENSMUSG00000037139 nonsynonymous SNV ENSMUST00000105854:c.G61A:p.V21I 4qD3 NA NA chr4 135318495 CAGxTCC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 89 0 0 12.586221 0.176471 0.02 -0.298102 28 6 761 166 60 60 0 0 GG 14.123527 47 0 1270 0 KEEP + Myom3 NO AA_7 chr4 139305074 139305074 T G exonic Pax7 nonsynonymous SNV NM_011039:c.A1169C:p.N390T exonic Pax7 nonsynonymous SNV uc008vms.1:c.A1169C:p.N390T exonic ENSMUSG00000028736 nonsynonymous SNV ENSMUST00000030508:c.A1169C:p.N390T 4qD3 NA NA chr4 139305074 GGGxTGC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 84 0 0 16.926686 0.205128 0.02 -0.341954 31 8 848 217 60 60 0 0 TT 9.919834 33 0 875 0 KEEP - Pax7 NO AA_7 chr4 140319286 140319286 T A intronic Padi4 NA NA intronic Padi4 NA NA intronic ENSMUSG00000025330 NA NA 4qD3 NA NA chr4 140319286 AAGxATT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 67 0 0 6.528415 0.136364 0.02 -0.192878 19 3 510 89 60 60 0 0 TT 10.21019 34 0 886 0 KEEP - Padi4 YES AA_7 chr4 141352668 141352668 C A exonic Casp9 nonsynonymous SNV NM_001277932:c.C451A:p.P151T exonic Casp9 nonsynonymous SNV uc008vpg.1:c.C451A:p.P151T exonic ENSMUSG00000028914 nonsynonymous SNV ENSMUST00000030747:c.C451A:p.P151T 4qE1 NA NA chr4 141352668 TGGxCTG C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 60 0 0 10.364419 0.192308 0.02 -0.22767 21 5 571 135 60 60 0 0 CC 8.720003 29 0 790 0 KEEP + Casp9 NO AA_7 chr4 143861054 143861054 T A UTR3 Pramel5 NA NA UTR3 Pramel5 NA NA UTR3 ENSMUSG00000036749 NA NA 4qE1 "Score=0.966408;Name=No.86444,chr4:143557585" NA chr4 143861054 AAAxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 66 0 0 16.482643 0.241379 0.02 -0.254213 22 7 584 201 60 60 0 0 TT 9.921645 33 0 874 0 KEEP - Pramel5 YES AA_7 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 43 0 0 53.996177 1 0.02 -0.149055 0 17 0 459 0 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 NO AA_7 chr4 149990141 149990141 A T exonic Rere nonsynonymous SNV NM_001085492:c.A3463T:p.R1155W exonic Rere nonsynonymous SNV uc008vxr.1:c.A3463T:p.R1155W exonic ENSMUSG00000039852 nonsynonymous SNV ENSMUST00000105680:c.A2659T:p.R887W 4qE2 NA NA chr4 149990141 AAGxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 67 0 0 22.297288 0.375 0.02 -0.210469 15 9 432 249 60 60 0 0 AA 10.192755 34 0 913 0 KEEP + Rere YES AA_7 chr4 151689695 151689695 G T intronic Rnf207 NA NA intronic Rnf207 NA NA intronic ENSMUSG00000058498 NA NA 4qE2 NA NA chr4 151689695 CTTxGTT G T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 329 1 0 22.536836 0.095238 0.02 2.384077 114 12 3202 340 60 60 0 0 GG 49.010235 163 0 4582 0 KEEP - Rnf207 NO AA_7 chr4 154441213 154441213 A T exonic Pex10 synonymous SNV NM_001042407:c.A36T:p.A12A exonic Pex10 synonymous SNV uc008wcs.1:c.A36T:p.A12A exonic ENSMUSG00000029047 synonymous SNV ENSMUST00000103180:c.A36T:p.A12A 4qE2 NA NA chr4 154441213 GGCxGCG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 97 0 0 12.596008 0.153846 0.02 -0.341966 33 6 908 170 60 60 0 0 AA 11.729745 39 0 1070 0 KEEP + Pex10 YES AA_7 chr4 155606763 155606763 T A exonic Klhl17 nonsynonymous SNV NM_198305:c.A797T:p.D266V exonic Klhl17 nonsynonymous SNV uc008wgs.2:c.A797T:p.D266V exonic ENSMUSG00000078484 nonsynonymous SNV ENSMUST00000105569:c.A797T:p.D266V 4qE2 NA NA chr4 155606763 GTGxCTA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 210 0 0 16.398461 0.102273 0.02 0.826098 79 9 2191 247 60 60 0 0 TT 27.461191 95 1 2540 9 KEEP - Klhl17 YES AA_7 chr4 18037596 18037596 A T exonic Mmp16 nonsynonymous SNV NM_019724:c.A1244T:p.K415I exonic Mmp16 nonsynonymous SNV uc008sbw.2:c.A1244T:p.K415I exonic ENSMUSG00000028226 nonsynonymous SNV ENSMUST00000029881:c.A1244T:p.K415I 4qA3 NA NA chr4 18037596 TCAxAGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 108 0 0 8.648137 0.096154 0.02 1.044092 47 5 1292 134 60 60 0 0 AA 14.13698 47 0 1307 0 KEEP + Mmp16 YES AA_7 chr4 32727643 32727643 A T exonic Casp8ap2 nonsynonymous SNV NM_001122978:c.A1721T:p.Q574L exonic Casp8ap2 nonsynonymous SNV uc008sew.2:c.A1721T:p.Q574L exonic ENSMUSG00000028282 nonsynonymous SNV ENSMUST00000029950:c.A1721T:p.Q574L 4qA5 NA NA chr4 32727643 ATCxAAT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 102 0 0 12.146626 0.117647 0.02 1.247989 45 6 1261 173 60 60 0 0 AA 11.730164 39 0 1076 0 KEEP + Casp8ap2 YES AA_7 chr4 32905628 32905628 T G exonic Ankrd6 nonsynonymous SNV NM_001012451:c.A849C:p.E283D exonic Ankrd6 nonsynonymous SNV uc008sff.1:c.A849C:p.E283D exonic ENSMUSG00000040183 nonsynonymous SNV ENSMUST00000108166:c.A672C:p.E224D 4qA5 NA NA chr4 32905628 CTCxTCC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 249 0 0 39.920855 0.261905 0.02 0.763718 62 22 1742 504 60 60 0 0 TT 35.158194 117 0 3259 0 KEEP - Ankrd6 NO AA_7 chr4 40983084 40983084 T A exonic Aqp7 synonymous SNV NM_007473:c.A186T:p.G62G exonic Aqp7 synonymous SNV uc008sif.1:c.A186T:p.G62G exonic ENSMUSG00000028427 synonymous SNV ENSMUST00000054945:c.A186T:p.G62G 4qA5 NA NA chr4 40983084 CACxCCG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865686 0.865745 0.999931 71 0 0 23.030991 0.25641 0.02 -0.342017 29 10 831 279 60 60 0 0 TT 7.519977 25 0 701 0 KEEP - Aqp7 YES AA_7 chr4 41360910 41360910 T A exonic Kif24 nonsynonymous SNV NM_024241:c.A1064T:p.Y355F exonic Kif24 nonsynonymous SNV uc008sio.1:c.A1064T:p.Y355F exonic ENSMUSG00000028438 nonsynonymous SNV ENSMUST00000051409:c.A956T:p.Y319F 4qA5 NA NA chr4 41360910 TCAxAGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 129 0 0 7.06408 0.08 0.02 -0.438393 46 4 1235 112 60 60 0 0 TT 17.140833 57 0 1524 0 KEEP - Kif24 YES AA_7 chr4 46039007 46039007 T A exonic Tdrd7 nonsynonymous SNV NM_146142:c.T2855A:p.V952E exonic Tdrd7 nonsynonymous SNV uc008std.1:c.T2855A:p.V952E exonic ENSMUSG00000035517 nonsynonymous SNV ENSMUST00000043784:c.T2855A:p.V952E 4qB1 NA NA chr4 46039007 AAGxGTA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 68 0 0 7.959539 0.111111 0.02 -0.315678 32 4 884 115 60 60 0 0 TT 8.120095 27 0 732 0 KEEP + Tdrd7 YES AA_7 chr4 52924176 52924176 T A exonic Olfr272 synonymous SNV NM_146839:c.A489T:p.A163A exonic Olfr272 synonymous SNV uc008swq.1:c.A489T:p.A163A exonic ENSMUSG00000051593 synonymous SNV ENSMUST00000051600:c.A489T:p.A163A 4qB2 NA NA chr4 52924176 CACxGCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760834 0.760887 0.999931 63 0 0 10.095449 0.151515 0.02 -0.289361 28 5 777 138 60 60 0 0 TT 7.519446 25 0 691 0 KEEP - Olfr272 YES AA_7 chr4 57245266 57245266 T G exonic Ptpn3 nonsynonymous SNV NM_011207:c.A1241C:p.Y414S exonic Ptpn3 nonsynonymous SNV uc008sya.2:c.A1241C:p.Y414S exonic ENSMUSG00000038764 nonsynonymous SNV ENSMUST00000075637:c.A1241C:p.Y414S 4qB3 NA NA chr4 57245266 GTAxAGA T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 128 0 0 16.005718 0.156863 0.02 1.248151 43 8 1150 218 60 60 0 0 TT 17.440639 58 0 1547 0 KEEP - Ptpn3 NO AA_7 chr4 62318165 62318165 A T exonic Rgs3 nonsynonymous SNV NM_001081650:c.A1223T:p.Q408L exonic Rgs3 nonsynonymous SNV uc008tfe.1:c.A1223T:p.Q408L exonic ENSMUSG00000059810 nonsynonymous SNV ENSMUST00000107424:c.A1223T:p.Q408L 4qB3 NA NA chr4 62318165 AGCxGGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 235 3 0 58.867057 0.315789 0.02 1.019987 52 24 1468 680 60 60 0 0 AA 38.801302 129 0 3586 0 KEEP + Rgs3 YES AA_7 chr4 62793996 62793996 T G exonic Zfp618 nonsynonymous SNV NM_028326:c.T1700G:p.V567G exonic Zfp618 nonsynonymous SNV uc008tfn.2:c.T1700G:p.V567G exonic ENSMUSG00000028358 nonsynonymous SNV ENSMUST00000064814:c.T1700G:p.V567G 4qB3 NA NA chr4 62793996 AGGxCAT T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 182 0 0 70.698621 0.353659 0.02 0.976215 53 29 1468 800 60 60 0 0 TT 23.455474 78 0 2126 0 KEEP + Zfp618 NO AA_7 chr4 62962325 62962325 A T splicing Col27a1(NM_025685:exon31:c.3250-2A>T) NA NA splicing "Col27a1(uc008tfs.1:exon31:c.3250-2A>T),mKIAA1870" NA NA splicing ENSMUSG00000045672(ENSMUST00000036300:exon31:c.3250-2A>T) NA NA 4qB3 NA NA chr4 62962325 TCCxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 241 0 0 17.399933 0.086207 0.02 2.364868 106 10 3008 274 60 60 0 0 AA 33.376023 111 0 3059 0 KEEP + Col27a1 YES AA_7 chr4 65653494 65653494 A G intronic Astn2 NA NA intronic Astn2 NA NA intronic ENSMUSG00000028373 NA NA 4qC1 NA NA chr4 65653494 AAAxATT A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 64 0 0 16.703546 0.25 0.02 -0.245531 21 7 580 202 60 60 0 0 AA 9.625449 32 0 894 0 KEEP - Astn2 NO AA_7 chr4 6616030 6616030 G A exonic Tox nonsynonymous SNV NM_145711:c.C1480T:p.R494C exonic Tox nonsynonymous SNV uc008rxs.2:c.C1480T:p.R494C exonic ENSMUSG00000041272 nonsynonymous SNV ENSMUST00000039987:c.C1480T:p.R494C 4qA1 NA NA chr4 6616030 AACxCAC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999997 86 0 0 9.736684 0.119048 0.02 -0.367856 37 5 889 140 60 60 0 0 GG 9.6119 32 0 768 0 KEEP - Tox NO AA_7 chr4 73386907 73386907 T A exonic Rasef nonsynonymous SNV NM_001017427:c.A1028T:p.Y343F exonic Rasef nonsynonymous SNV uc008tiw.1:c.A1028T:p.Y343F exonic ENSMUSG00000043003 nonsynonymous SNV ENSMUST00000058292:c.A1028T:p.Y343F 4qC3 NA NA chr4 73386907 TTGxAGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 185 2 0 8.640912 0.073529 0.02 1.099009 63 5 1698 140 60 60 0 0 TT 25.847561 86 0 2250 0 KEEP - Rasef YES AA_7 chr5 105390160 105390160 A T intronic Abcg3 NA NA intronic Abcg3 NA NA intronic ENSMUSG00000029299 NA NA 5qE5 NA NA chr5 105390160 GACxGCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959857 0.959859 0.999998 93 0 0 7.362554 0.08 0.02 -0.438473 46 4 1299 115 60 60 0 0 AA 9.925102 33 0 903 0 KEEP - Abcg3 YES AA_7 chr5 105719834 105719834 T A intronic Gbp6 NA NA intronic "Gbp4,Gbp6,Mpa2l" NA NA intronic ENSMUSG00000079362 NA NA 5qE5 "Score=0.969352;Name=No.90938,chr5:105632124" NA chr5 105719834 GGCxGGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 226 0 0 12.304124 0.076087 0.02 0.888611 85 7 2393 197 60 60 0 0 TT 33.075937 110 0 3059 0 KEEP - Gbp6 YES AA_7 chr5 109520880 109520880 T A exonic Vmn2r12 nonsynonymous SNV NM_001104623:c.A835T:p.S279C exonic Vmn2r12 nonsynonymous SNV uc009vdj.1:c.A835T:p.S279C exonic ENSMUSG00000090688 nonsynonymous SNV ENSMUST00000095922:c.A835T:p.S279C 5qF "Score=0.923563;Name=No.90946,chr5:109294468" NA chr5 109520880 AGCxGAC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 321 0 0 20.357345 0.096491 0.02 2.381968 103 11 2911 308 60 60 0 0 TT 46.919646 156 0 4318 0 KEEP - Vmn2r12 YES AA_7 chr5 110771289 110771289 A T intronic P2rx2 NA NA intronic P2rx2 NA NA intronic ENSMUSG00000029503 NA NA 5qF NA NA chr5 110771289 TGTxGGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 267 0 0 27.624781 0.116667 0.02 2.338409 106 14 2907 397 60 60 0 0 AA 36.915182 123 0 3282 0 KEEP - P2rx2 YES AA_7 chr5 113122142 113122142 G A exonic Myo18b synonymous SNV NM_028901:c.C6804T:p.P2268P exonic Myo18b synonymous SNV uc008ytr.2:c.C6804T:p.P2268P exonic ENSMUSG00000072720 synonymous SNV ENSMUST00000086617:c.C6804T:p.P2268P 5qF NA NA chr5 113122142 AGGxGGA G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 138 0 0 15.769466 0.109589 0.02 1.15345 65 8 1794 229 60 60 0 0 GG 16.23454 54 0 1469 0 KEEP - Myo18b NO AA_7 chr5 115124135 115124135 T G exonic Gltp synonymous SNV NM_019821:c.A375C:p.R125R exonic Gltp synonymous SNV uc008yzw.1:c.A375C:p.R125R exonic ENSMUSG00000011884 synonymous SNV ENSMUST00000012028:c.A375C:p.R125R 5qF NA NA chr5 115124135 GACxCGG T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 180 1 0 29.095875 0.222222 0.02 1.045168 49 14 1364 369 60 60 0 0 TT 28.538923 95 0 2611 0 KEEP - Gltp NO AA_7 chr5 116029143 116029143 A C exonic Gcn1l1 nonsynonymous SNV NM_172719:c.A584C:p.N195T exonic Gcn1l1 nonsynonymous SNV uc008zee.1:c.A584C:p.N195T exonic ENSMUSG00000041638 nonsynonymous SNV ENSMUST00000064454:c.A584C:p.N195T 5qF NA NA chr5 116029143 AAAxCTA A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800159 0.800245 0.999892 61 0 0 18.249444 0.228571 0.02 -0.306869 27 8 721 226 70 70 0 0 AA 6.917446 23 0 630 0 KEEP + Gcn1l1 NO AA_7 chr5 121077202 121077202 G C exonic Ddx54 nonsynonymous SNV NM_028041:c.G2526C:p.Q842H exonic Ddx54 nonsynonymous SNV uc008zhq.1:c.G2526C:p.Q842H exonic ENSMUSG00000029599 nonsynonymous SNV ENSMUST00000031598:c.G2526C:p.Q842H 5qF NA NA chr5 121077202 GCAxCTT G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 120 0 0 18.601572 0.173077 0.02 1.239786 43 9 1193 247 60 60 0 0 GG 14.728013 49 0 1376 0 KEEP + Ddx54 NO AA_7 chr5 121349116 121349116 A T exonic Oas1a nonsynonymous SNV NM_145211:c.T856A:p.S286T exonic Oas1a nonsynonymous SNV uc008zij.2:c.T856A:p.S286T exonic ENSMUSG00000052776 nonsynonymous SNV ENSMUST00000080322:c.T856A:p.S286T 5qF "Score=0.931552;Name=No.90995,chr5:121324518" NA chr5 121349116 TGGxGAC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 191 2 0 7.866243 0.064935 0.02 0.913325 72 5 2055 135 60 60 0 0 AA 26.769506 89 0 2482 0 KEEP - Oas1a YES AA_7 chr5 122092633 122092633 C A exonic Acad10 nonsynonymous SNV NM_028037:c.G1049T:p.C350F exonic "9330129D05Rik,Acad10" nonsynonymous SNV uc008zjz.1:c.G1049T:p.C350F exonic ENSMUSG00000029456 nonsynonymous SNV ENSMUST00000031412:c.G1049T:p.C350F 5qF NA NA chr5 122092633 TCAxAGA C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 168 2 0 13.409615 0.114754 0.02 1.160371 54 7 1485 195 60 60 0 0 CC 24.654726 82 0 2270 0 KEEP - Acad10 NO AA_7 chr5 122092634 122092634 A T exonic Acad10 nonsynonymous SNV NM_028037:c.T1048A:p.C350S exonic "9330129D05Rik,Acad10" nonsynonymous SNV uc008zjz.1:c.T1048A:p.C350S exonic ENSMUSG00000029456 nonsynonymous SNV ENSMUST00000031412:c.T1048A:p.C350S 5qF NA NA chr5 122092634 CACxGAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 169 2 0 12.612071 0.114754 0.02 1.160326 54 7 1512 187 60 60 0 0 AA 24.663432 82 0 2263 0 KEEP - Acad10 YES AA_7 chr5 124457645 124457645 T A exonic Vps37b nonsynonymous SNV NM_177876:c.A339T:p.E113D exonic Vps37b nonsynonymous SNV uc008zot.1:c.A339T:p.E113D exonic ENSMUSG00000066278 nonsynonymous SNV ENSMUST00000040967:c.A339T:p.E113D 5qF NA NA chr5 124457645 CCCxTCC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 145 0 0 8.314661 0.079365 0.02 1.044933 58 5 1627 135 60 60 0 0 TT 16.844182 56 0 1560 0 KEEP - Vps37b YES AA_7 chr5 125045812 125045812 T G exonic Gtf2h3 nonsynonymous SNV NM_181410:c.T824G:p.I275S exonic Gtf2h3 nonsynonymous SNV uc012edo.1:c.T824G:p.I275S exonic ENSMUSG00000029387 nonsynonymous SNV ENSMUST00000031333:c.T824G:p.I275S 5qF NA NA chr5 125045812 CAGxTTT T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 206 0 0 10.265884 0.068182 0.02 0.92359 82 6 2258 169 60 60 0 0 TT 30.974985 103 0 2786 0 KEEP + Gtf2h3 NO AA_7 chr5 134719855 134719855 T A intronic Gtf2i NA NA intronic Gtf2i NA NA intronic ENSMUSG00000060261 NA NA 5qG2 NA NA chr5 134719855 GGCxGGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 90 0 0 7.912693 0.102564 0.02 -0.342004 35 4 981 116 60 60 0 0 TT 13.231224 44 0 1189 0 KEEP - Gtf2i YES AA_7 chr5 137852634 137852634 G T exonic Zan synonymous SNV NM_011741:c.C10572A:p.A3524A exonic Zan synonymous SNV uc012eey.1:c.C10572A:p.A3524A exonic ENSMUSG00000079173 synonymous SNV ENSMUST00000164178:c.C10572A:p.A3524A 5qG2 NA NA chr5 137852634 CTGxGCG G T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 138 0 0 6.599753 0.090909 0.02 -0.38582 40 4 1119 105 60 60 0 0 GG 24.059622 80 0 2210 0 KEEP - Zan NO AA_7 chr5 138276906 138276906 A C exonic Pilra nonsynonymous SNV NM_153510:c.T125G:p.V42G exonic Pilra nonsynonymous SNV uc009aeb.2:c.T116G:p.V39G exonic ENSMUSG00000046245 nonsynonymous SNV ENSMUST00000110980:c.T116G:p.V39G 5qG2 NA NA chr5 138276906 TTGxCCC A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 100 0 0 6.347191 0.083333 0.02 -0.420856 44 4 1212 104 60 60 0 0 AA 12.630393 42 0 1134 0 KEEP - Pilra NO AA_7 chr5 138750491 138750491 G A exonic Stag3 nonsynonymous SNV NM_016964:c.G3634A:p.G1212R exonic Stag3 nonsynonymous SNV uc012efm.1:c.G2341A:p.G781R exonic ENSMUSG00000036928 nonsynonymous SNV ENSMUST00000048028:c.G3634A:p.G1212R 5qG2 NA NA chr5 138750491 CGTxGAG G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 134 2 0 17.47475 0.16 0.02 -0.438472 42 8 1181 232 60 60 0 0 GG 19.25181 64 0 1812 0 KEEP + Stag3 NO AA_7 chr5 141090389 141090389 C T exonic Lfng nonsynonymous SNV NM_008494:c.C1099T:p.P367S exonic Lfng nonsynonymous SNV uc009ahv.1:c.C562T:p.P188S exonic ENSMUSG00000029570 nonsynonymous SNV ENSMUST00000031555:c.C1099T:p.P367S 5qG2 NA NA chr5 141090389 TACxCAG C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 291 0 0 10.144399 0.058252 0.02 2.487601 97 6 2690 172 60 60 0 0 CC 43.311017 144 0 4018 0 KEEP + Lfng NO AA_7 chr5 143667178 143667178 T A intronic Actb NA NA intronic Actb NA NA intronic ENSMUSG00000029580 NA NA 5qG2 "Score=0.941418;Name=No.63423,chr16:37882621" NA chr5 143667178 TCTxAGC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 196 3 0 8.740781 0.073529 0.02 1.09909 63 5 1696 141 60 60 0 0 TT 29.145544 97 0 2586 0 KEEP - Actb YES AA_7 chr5 144975281 144975281 T A exonic Tecpr1 nonsynonymous SNV NM_027410:c.A665T:p.Y222F exonic "Tecpr1,mKIAA1358" nonsynonymous SNV uc009alk.1:c.A242T:p.Y81F exonic ENSMUSG00000066621 nonsynonymous SNV ENSMUST00000085701:c.A665T:p.Y222F 5qG2 NA NA chr5 144975281 CGGxACC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999998 91 0 0 14.655507 0.148936 0.02 -0.412088 40 7 1073 199 60 60 0 0 TT 9.922763 33 0 873 0 KEEP - Tecpr1 YES AA_7 chr5 145565930 145565930 C T exonic Trrap synonymous SNV NM_001081362:c.C4092T:p.P1364P exonic Trrap synonymous SNV uc009alu.1:c.C228T:p.P76P exonic ENSMUSG00000045482 synonymous SNV ENSMUST00000038980:c.C4092T:p.P1364P 5qG2 NA NA chr5 145565930 GCCxTTA C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 154 3 0 13.662268 0.116667 0.02 1.169141 53 7 1482 197 60 60 0 0 CC 20.757061 69 0 1973 0 KEEP + Trrap NO AA_7 chr5 148142783 148142783 T A exonic Flt3 synonymous SNV NM_010229:c.A2967T:p.P989P exonic Flt3 synonymous SNV uc009aob.1:c.A2967T:p.P989P exonic ENSMUSG00000042817 synonymous SNV ENSMUST00000049324:c.A2967T:p.P989P 5qG3 NA NA chr5 148142783 CTGxGGC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 318 0 0 16.303152 0.076271 0.02 2.455157 109 9 2914 258 60 60 0 0 TT 42.59521 150 1 3962 23 KEEP - Flt3 YES AA_7 chr5 32367152 32367152 A C intronic Bre NA NA intronic Bre NA NA exonic ENSMUSG00000052139 synonymous SNV ENSMUST00000114515:c.A1102C:p.R368R 5qB1 NA NA chr5 32367152 AACxGGG A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877647 0.877708 0.999931 77 0 0 6.871814 0.1 0.02 -0.350735 36 4 1013 106 60 60 0 0 AA 7.517902 25 0 678 0 KEEP + Bre NO AA_7 chr5 34087745 34087745 C G exonic Letm1 synonymous SNV NM_019694:c.G1848C:p.G616G exonic Letm1 synonymous SNV uc008xbi.1:c.G1848C:p.G616G exonic ENSMUSG00000005299 synonymous SNV ENSMUST00000005431:c.G1848C:p.G616G 5qB2 NA NA chr5 34087745 CTGxCCG C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 148 0 0 9.317762 0.090909 0.02 1.212966 50 5 1383 142 60 60 0 0 CC 23.725392 79 0 2144 0 KEEP - Letm1 NO AA_7 chr5 34804913 34804913 C T exonic Fam193a synonymous SNV NM_001243123:c.C3273T:p.G1091G exonic Fam193a synonymous SNV uc008xch.1:c.C2412T:p.G804G exonic ENSMUSG00000037210 synonymous SNV ENSMUST00000094867:c.C2412T:p.G804G 5qB2 NA NA chr5 34804913 TGGxGGG C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 65 0 0 11.082939 0.238095 0.02 -0.192804 16 5 399 137 60 60 0 0 CC 10.211382 34 0 813 0 KEEP + Fam193a NO AA_7 chr5 38790103 38790103 T A exonic Slc2a9 synonymous SNV NM_001012363:c.A738T:p.A246A exonic Slc2a9 synonymous SNV uc008xgo.1:c.A783T:p.A261A exonic ENSMUSG00000005107 synonymous SNV ENSMUST00000067872:c.A738T:p.A246A 5qB3 NA NA chr5 38790103 ATCxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 180 1 0 13.148076 0.093333 0.02 1.03755 68 7 1900 199 60 60 0 0 TT 22.858828 76 0 2098 0 KEEP - Slc2a9 YES AA_7 chr5 52766657 52766657 T A UTR3 Ccdc149 NA NA intergenic "Sod3(dist=5680),Lgi2(dist=162446)" NA NA exonic ENSMUSG00000045790 nonsynonymous SNV ENSMUST00000059428:c.A34T:p.N12Y 5qC1 NA NA chr5 52766657 TATxAAG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 78 0 0 10.126814 0.135135 0.02 -0.324445 32 5 883 141 60 60 0 0 TT 8.421078 28 0 763 0 KEEP NA Ccdc149 YES AA_7 chr5 69970750 69970750 C G exonic Gnpda2 nonsynonymous SNV NM_001038015:c.G591C:p.R197S exonic Gnpda2 nonsynonymous SNV uc008xqq.1:c.G591C:p.R197S exonic ENSMUSG00000029209 nonsynonymous SNV ENSMUST00000031117:c.G591C:p.R197S 5qC3.1 NA NA chr5 69970750 CTCxCTA C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 170 2 0 36.481105 0.310345 0.02 1.088922 40 18 1114 435 60 60 0 0 CC 25.868171 86 0 2402 0 KEEP - Gnpda2 NO AA_7 chr5 73999543 73999543 T C exonic Lrrc66 synonymous SNV NM_153568:c.A1395G:p.S465S exonic Lrrc66 synonymous SNV uc008xta.1:c.A1395G:p.S465S exonic ENSMUSG00000067206 synonymous SNV ENSMUST00000087177:c.A1395G:p.S465S 5qC3.3 NA NA chr5 73999543 TTCxGAT T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 221 0 0 29.519296 0.183908 0.02 0.834541 71 16 2016 399 60 60 0 0 TT 26.461445 88 0 2431 0 KEEP - Lrrc66 NO AA_7 chr5 88394025 88394025 T G ncRNA_intronic 1700066N21Rik NA NA intergenic "Csn3(dist=32456),4931407G18Rik(dist=14451)" NA NA UTR3 ENSMUSG00000055961 NA NA 5qE1 NA NA chr5 88394025 ATCxTCC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 217 2 0 59.167093 0.345679 0.02 0.985153 53 28 1484 685 60 60 0 0 TT 34.584937 115 0 3172 0 KEEP NA 1700066N21Rik NO AA_7 chr5 89628768 89628768 T A exonic Slc4a4 nonsynonymous SNV NM_001136260:c.T2369A:p.L790Q exonic Slc4a4 nonsynonymous SNV uc012dyd.1:c.T2237A:p.L746Q exonic ENSMUSG00000060961 nonsynonymous SNV ENSMUST00000130041:c.T2237A:p.L746Q 5qE1 NA NA chr5 89628768 TGCxAGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 40 0 0 8.831329 0.266667 0.02 -0.131519 11 4 303 107 60 60 0 0 TT 5.412896 18 0 483 0 KEEP + Slc4a4 YES AA_7 chr5 92734295 92734295 A C exonic Sdad1 nonsynonymous SNV NM_172713:c.T229G:p.F77V exonic Sdad1 nonsynonymous SNV uc008yct.1:c.T229G:p.F77V exonic ENSMUSG00000029415 nonsynonymous SNV ENSMUST00000031364:c.T229G:p.F77V 5qE2 NA NA chr5 92734295 GGAxGTT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 170 2 0 29.608495 0.25 0.02 0.886492 51 17 1439 381 60 60 0 0 AA 21.621509 72 0 1985 0 KEEP - Sdad1 NO AA_7 chr5 97884911 97884911 T A exonic Gk2 synonymous SNV NM_010294:c.A1086T:p.P362P exonic Gk2 synonymous SNV uc008yfz.1:c.A1086T:p.P362P exonic ENSMUSG00000050553 synonymous SNV ENSMUST00000059657:c.A1086T:p.P362P 5qE3 NA NA chr5 97884911 GGCxGGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 213 0 0 21.310858 0.11215 0.02 2.444714 95 12 2688 317 60 60 0 0 TT 27.357053 91 0 2503 0 KEEP + Gk2 YES AA_7 chr6 113066862 113066862 T G exonic Setd5 nonsynonymous SNV NM_028385:c.T1166G:p.F389C exonic "Setd5,mKIAA1757" nonsynonymous SNV uc009des.1:c.T833G:p.F278C exonic ENSMUSG00000034269 nonsynonymous SNV ENSMUST00000113155:c.T1223G:p.F408C 6qE3 NA NA chr6 113066862 CATxTGA T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 88 0 0 7.361865 0.105263 0.02 -0.333236 34 4 960 110 60 60 0 0 TT 11.429871 38 0 1060 0 KEEP + Setd5 NO AA_7 chr6 113290321 113290321 T A exonic Camk1 nonsynonymous SNV NM_133926:c.A180T:p.E60D exonic Camk1 nonsynonymous SNV uc009dfk.1:c.A180T:p.E60D exonic ENSMUSG00000030272 nonsynonymous SNV ENSMUST00000032409:c.A180T:p.E60D 6qE3 NA NA chr6 113290321 GCCxTCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909058 0.909069 0.999988 76 0 0 28.17017 0.27907 0.02 -0.37708 31 12 878 335 60 60 0 0 TT 8.081342 27 0 721 0 KEEP - Camk1 YES AA_7 chr6 120885016 120885016 T G exonic Mical3 nonsynonymous SNV NM_001270475:c.A5732C:p.E1911A exonic Mical3 nonsynonymous SNV uc009dnw.1:c.A3119C:p.E1040A exonic ENSMUSG00000051586 nonsynonymous SNV ENSMUST00000038002:c.A2981C:p.E994A 6qF1 NA NA chr6 120885016 AGCxCCC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 319 5 0 53.561714 0.230769 0.02 2.357391 90 27 2524 681 60 60 0 0 TT 48.297344 161 0 4337 0 KEEP - Mical3 NO AA_7 chr6 123801788 123801788 A T intronic Vmn2r25 NA NA intronic Vmn2r25 NA NA intronic ENSMUSG00000072779 NA NA 6qF2 "Score=0.95642;Name=No.94058,chr6:123970175" NA chr6 123801788 ACTxTGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 244 1 0 9.573801 0.058824 0.02 2.300369 96 6 2587 166 60 60 0 0 AA 37.588259 125 0 3333 0 KEEP - Vmn2r25 YES AA_7 chr6 123976190 123976190 T A intronic Vmn2r26 NA NA intronic Vmn2r26 NA NA intronic ENSMUSG00000030141 NA NA 6qF2 "Score=0.95642;Name=No.94058,chr6:123772563" NA chr6 123976190 CCTxAGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 273 0 0 18.905007 0.105263 0.02 0.960556 85 10 2308 280 60 60 0 0 TT 45.347871 151 0 3995 0 KEEP + Vmn2r26 YES AA_7 chr6 126592362 126592362 T A exonic Kcna1 nonsynonymous SNV NM_010595:c.A1012T:p.I338L exonic Kcna1 nonsynonymous SNV uc009dvb.1:c.A1012T:p.I338L exonic ENSMUSG00000047976 nonsynonymous SNV ENSMUST00000055168:c.A1012T:p.I338L 6qF3 NA NA chr6 126592362 GTAxGAC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 118 0 0 19.37857 0.176471 0.02 1.248045 42 9 1139 254 60 60 0 0 TT 14.435409 48 0 1299 0 KEEP - Kcna1 YES AA_7 chr6 126688900 126688900 C A exonic Kcna6 nonsynonymous SNV NM_013568:c.G1043T:p.R348L exonic Kcna6 nonsynonymous SNV uc009dvd.2:c.G1043T:p.R348L exonic ENSMUSG00000038077 nonsynonymous SNV ENSMUST00000040751:c.G1043T:p.R348L 6qF3 NA NA chr6 126688900 ACCxGGA C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 186 0 0 11.059087 0.092105 0.02 1.029734 69 7 1633 178 60 60 0 0 CC 25.828263 86 0 2075 0 KEEP - Kcna6 NO AA_7 chr6 128453449 128453449 A T intronic Pzp NA NA intronic Pzp NA NA intronic ENSMUSG00000030359 NA NA 6qF3 NA NA chr6 128453449 GGCxTGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 78 0 0 8.012383 0.114286 0.02 -0.306739 31 4 828 115 60 60 0 0 AA 10.225221 34 0 920 0 KEEP - Pzp YES AA_7 chr6 128663583 128663583 A T intronic Klrb1 NA NA intronic 4930431A04Rik NA NA intronic ENSMUSG00000079299 NA NA 6qF3 NA NA chr6 128663583 AAAxGCT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 73 0 0 12.853648 0.222222 0.02 -0.236763 21 6 590 162 60 60 0 0 AA 11.429771 38 0 1055 0 KEEP - Klrb1 YES AA_7 chr6 129372398 129372398 T A exonic Clec9a synonymous SNV NM_001205365:c.T468A:p.P156P exonic Clec9a synonymous SNV uc012etk.1:c.T468A:p.P156P exonic ENSMUSG00000046080 nonsynonymous SNV ENSMUST00000166194:c.T815A:p.L272Q 6qF3 NA NA chr6 129372398 ACCxGTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 75 0 0 16.036427 0.212121 0.02 -0.289393 26 7 732 201 60 60 0 0 TT 9.62437 32 0 877 0 KEEP + Clec9a YES AA_7 chr6 3327026 3327026 G A exonic Samd9l synonymous SNV NM_010156:c.C234T:p.S78S exonic Samd9l synonymous SNV uc009auy.2:c.C234T:p.S78S exonic ENSMUSG00000047735 synonymous SNV ENSMUST00000120087:c.C234T:p.S78S 6qA1 NA NA chr6 3327026 AGGxGAA G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 148 0 0 10.981972 0.085714 0.02 1.179754 64 6 1785 170 60 60 0 0 GG 18.348434 61 0 1710 0 KEEP - Samd9l NO AA_7 chr6 34884183 34884183 C T exonic Stra8 synonymous SNV NM_009292:c.C745T:p.L249L exonic Stra8 synonymous SNV uc009bib.1:c.C412T:p.L138L exonic ENSMUSG00000029848 synonymous SNV ENSMUST00000114997:c.C412T:p.L138L 6qB1 NA NA chr6 34884183 CACxTGT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963773 0.963774 0.999999 94 0 0 9.490599 0.098039 0.02 1.248311 46 5 1278 142 60 60 0 0 CC 10.528376 35 0 990 0 KEEP + Stra8 NO AA_7 chr6 34896185 34896185 G A exonic 2010107G12Rik synonymous SNV NM_001025573:c.C864T:p.P288P exonic 2010107G12Rik synonymous SNV uc012ejv.1:c.C864T:p.P288P exonic ENSMUSG00000029847 synonymous SNV ENSMUST00000044387:c.C864T:p.P288P 6qB1 NA NA chr6 34896185 CCTxGGC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739582 0.739671 0.999879 60 0 0 10.566387 0.15625 0.02 -0.280601 27 5 750 142 60 60 0 0 GG 6.617778 22 0 621 0 KEEP - 2010107G12Rik NO AA_7 chr6 42421818 42421818 A C exonic Olfr457 nonsynonymous SNV NM_146987:c.T358G:p.Y120D exonic Olfr457 nonsynonymous SNV uc009brj.1:c.T358G:p.Y120D exonic ENSMUSG00000091983 nonsynonymous SNV ENSMUST00000170504:c.T358G:p.Y120D 6qB2.1 NA NA chr6 42421818 CATxGGC A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 158 2 1 7.994468 0.081967 0.02 1.160356 56 5 1556 131 60 60 0 0 AA 23.447054 78 0 2105 0 KEEP - Olfr457 NO AA_7 chr6 43031730 43031730 A T intergenic "Olfr444(dist=125299),Olfr441(dist=34013)" NA NA ncRNA_exonic IgK NA NA exonic ENSMUSG00000076500 nonsynonymous SNV ENSMUST00000103301:c.T146A:p.L49Q 6qB2.1 "Score=0.926292;Name=No.93629,chr6:67504643" NA chr6 43031730 TGCxGGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 151 0 0 11.639444 0.109091 0.02 1.212908 49 6 1390 170 60 60 0 0 AA 22.846185 76 0 2092 0 KEEP + Olfr444 YES AA_7 chr6 48422677 48422677 T A exonic Sspo nonsynonymous SNV NM_173428:c.T7468A:p.W2490R exonic Sspo nonsynonymous SNV uc009bul.1:c.T1492A:p.W498R exonic ENSMUSG00000029797 nonsynonymous SNV ENSMUST00000043676:c.T7033A:p.W2345R 6qB2.3 NA NA chr6 48422677 GGCxGGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 106 0 0 11.195551 0.115385 0.02 1.141369 46 6 1289 164 60 60 0 0 TT 12.93048 43 0 1171 0 KEEP + Sspo YES AA_7 chr6 48880794 48880794 A T exonic 1600015I10Rik nonsynonymous SNV NM_001081273:c.A728T:p.K243I exonic 1600015I10Rik nonsynonymous SNV uc012elm.1:c.A728T:p.K243I exonic ENSMUSG00000029813 nonsynonymous SNV ENSMUST00000031837:c.A728T:p.K243I 6qB2.3 NA NA chr6 48880794 GGAxAGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 192 0 0 20.740669 0.129412 0.02 0.754652 74 11 2069 297 60 60 0 0 AA 27.973101 93 0 2593 0 KEEP + 1600015I10Rik YES AA_7 chr6 51407186 51407186 T A intronic Nfe2l3 NA NA intronic Nfe2l3 NA NA intronic ENSMUSG00000029832 NA NA 6qB3 NA NA chr6 51407186 GACxATT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 80 0 0 7.195043 0.090909 0.02 -0.385865 40 4 1143 111 60 60 0 0 TT 8.422524 28 0 787 0 KEEP + Nfe2l3 YES AA_7 chr6 58866449 58866449 T A exonic Herc3 nonsynonymous SNV NM_028705:c.T2701A:p.S901T exonic Herc3 nonsynonymous SNV uc009cdh.1:c.T199A:p.S67T exonic ENSMUSG00000029804 nonsynonymous SNV ENSMUST00000041401:c.T2701A:p.S901T 6qB3 NA NA chr6 58866449 ATTxCGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 72 0 0 9.667777 0.15625 0.02 -0.280611 27 5 766 133 60 60 0 0 TT 9.019947 30 0 816 0 KEEP + Herc3 YES AA_7 chr6 65042539 65042539 A T exonic Smarcad1 nonsynonymous SNV NM_001253392:c.A1053T:p.Q351H exonic Smarcad1 nonsynonymous SNV uc012emw.1:c.A1053T:p.Q351H exonic ENSMUSG00000029920 nonsynonymous SNV ENSMUST00000031984:c.A1608T:p.Q536H 6qC1 NA NA chr6 65042539 TCAxGAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 130 0 0 9.228341 0.104167 0.02 -0.420904 43 5 1208 138 60 60 0 0 AA 18.331347 61 0 1672 0 KEEP + Smarcad1 YES AA_7 chr6 69557495 69557495 G A intergenic "Rprl1(dist=280327),Rpia(dist=1158219)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076558 synonymous SNV ENSMUST00000103359:c.C126T:p.T42T 6qC1 "Score=0.934334;Name=No.93918,chr6:69577352" NA chr6 69557495 CATxGTG G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 365 2 11 21.78221 0.096 0.02 2.285518 113 12 3204 332 60 60 0 0 GG 58.041022 193 0 5461 0 KEEP + Rprl1 NO AA_7 chr6 69650918 69650918 G A intergenic "Rprl1(dist=373750),Rpia(dist=1064796)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076562 synonymous SNV ENSMUST00000103363:c.C195T:p.P65P 6qC1 "Score=0.942472;Name=No.93911,chr6:69467976" NA chr6 69650918 TTTxGGG G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 267 4 0 82.973568 0.377778 0.02 0.906549 56 34 1588 927 60 60 0 1 GG 43.3159 144 0 4082 0 KEEP + Rprl1 NO AA_7 chr6 69893352 69893352 T A intergenic "Rprl1(dist=616184),Rpia(dist=822362)" NA NA ncRNA_intronic abParts NA NA exonic ENSMUSG00000076570 stopgain SNV ENSMUST00000103371:c.A172T:p.K58X 6qC1 NA NA chr6 69893352 GCTxCTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 160 0 0 9.46265 0.073171 0.02 0.976156 76 6 2155 159 60 60 0 0 TT 19.250085 64 0 1777 0 KEEP + Rprl1 YES AA_7 chr6 70165855 70165855 G C intergenic "Rprl1(dist=888687),Rpia(dist=549859)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076582 nonsynonymous SNV ENSMUST00000103383:c.G251C:p.G84A 6qC1 "Score=0.970312;Name=No.93926,chr6:70311569" NA chr6 70165855 CAGxCAG G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 146 0 0 10.769665 0.095238 0.02 1.142781 57 6 1595 165 60 60 0 0 GG 19.550978 65 0 1806 0 KEEP + Rprl1 NO AA_7 chr6 78416455 78416455 A T UTR3 Reg3g NA NA UTR3 Reg3g NA NA UTR3 ENSMUSG00000030017 NA NA 6qC3 NA NA chr6 78416455 ATCxACC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 190 0 0 13.126296 0.084337 0.02 1.155586 76 7 2119 202 60 60 0 0 AA 23.158104 77 0 2103 0 KEEP - Reg3g YES AA_7 chr6 83112715 83112715 A T exonic 1700003E16Rik nonsynonymous SNV NM_027948:c.A1627T:p.N543Y exonic 1700003E16Rik nonsynonymous SNV uc009cmx.2:c.A976T:p.N326Y exonic ENSMUSG00000030030 nonsynonymous SNV ENSMUST00000032106:c.A1627T:p.N543Y 6qC3 NA NA chr6 83112715 CTCxATC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 61 0 0 7.760307 0.137931 0.02 -0.254296 25 4 695 109 60 60 0 0 AA 7.519007 25 0 684 0 KEEP + 1700003E16Rik YES AA_7 chr6 83140270 83140270 G T exonic Dctn1 synonymous SNV NM_001198867:c.G1011T:p.L337L exonic Dctn1 synonymous SNV uc009cna.2:c.G1011T:p.L337L exonic ENSMUSG00000031865 synonymous SNV ENSMUST00000113907:c.G720T:p.L240L 6qC3 NA NA chr6 83140270 CCTxGTG G T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717222 0.717315 0.999869 56 1 0 12.85114 0.193548 0.02 -0.271837 25 6 700 166 60 60 0 0 GG 6.316958 21 0 592 0 KEEP + Dctn1 NO AA_7 chr6 83621606 83621606 C T UTR3 Cd207 NA NA UTR3 Cd207 NA NA UTR3 ENSMUSG00000034783 NA NA 6qC3 NA NA chr6 83621606 GAGxCTC C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 125 0 0 7.200013 0.081633 0.02 -0.429678 45 4 1252 113 70 60 0 0 CC 20.751994 69 0 1881 0 KEEP - Cd207 NO AA_7 chr6 85282515 85282515 T A intronic Sfxn5 NA NA intronic Sfxn5 NA NA exonic ENSMUSG00000033720 synonymous SNV ENSMUST00000113787:c.A201T:p.S67S 6qC3 NA NA chr6 85282515 CCCxGAA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 155 0 0 22.981111 0.146667 0.02 1.03782 64 11 1762 313 60 60 0 0 TT 18.917651 63 0 1706 0 KEEP - Sfxn5 YES AA_7 chr6 88567862 88567862 T A exonic Kbtbd12 nonsynonymous SNV NM_001278671:c.A979T:p.M327L exonic Kbtbd12 nonsynonymous SNV uc009cvk.1:c.A979T:p.M327L exonic ENSMUSG00000033182 nonsynonymous SNV ENSMUST00000038804:c.A979T:p.M327L 6qD1 NA NA chr6 88567862 CCAxGAC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641263 0.641347 0.999869 60 0 0 8.427383 0.142857 0.02 -0.245202 24 4 642 115 60 60 0 0 TT 6.315702 21 0 570 0 KEEP - Kbtbd12 YES AA_7 chr6 90548878 90548878 C A intronic Aldh1l1 NA NA ncRNA_intronic BC100523 NA NA ncRNA_intronic ENSMUSG00000089781 NA NA 6qD1 NA NA chr6 90548878 TTGxAGG C A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 85 0 0 7.179802 0.095238 0.02 -0.368315 38 4 1077 110 70 60 0 0 CC 8.422005 28 0 782 0 KEEP + Aldh1l1 NO AA_7 chr7 100011005 100011005 T A intronic 4632434I11Rik NA NA intronic 4632434I11Rik NA NA intronic ENSMUSG00000030641 NA NA 7qE1 NA NA chr7 100011005 CAGxGGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 97 0 0 8.637677 0.16 0.02 -0.219214 21 4 576 115 60 60 0 0 TT 15.934104 53 0 1432 0 KEEP - 4632434I11Rik YES AA_7 chr7 107794151 107794151 A T exonic Plekhb1 stopgain SNV NM_001163187:c.T366A:p.Y122X exonic Plekhb1 stopgain SNV uc009inl.2:c.T366A:p.Y122X exonic ENSMUSG00000030701 stopgain SNV ENSMUST00000107046:c.T366A:p.Y122X 7qE3 NA NA chr7 107794151 CTCxTAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 135 0 0 9.121953 0.083333 0.02 1.160539 55 5 1489 142 60 60 0 0 AA 16.228407 54 0 1452 0 KEEP - Plekhb1 YES AA_7 chr7 109951991 109951991 A T upstream Olfr564 NA NA upstream Olfr564 NA NA upstream ENSMUSG00000048469 NA NA 7qE3 NA NA chr7 109951991 TTCxATA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 77 0 0 7.778986 0.095238 0.02 -0.368059 38 4 1045 116 60 60 0 0 AA 8.421465 28 0 770 0 KEEP NA Olfr564 YES AA_7 chr7 110591301 110591301 A T exonic Olfr605 nonsynonymous SNV NM_001011854:c.T335A:p.M112K exonic Olfr605 nonsynonymous SNV uc009its.2:c.T335A:p.M112K exonic ENSMUSG00000058079 nonsynonymous SNV ENSMUST00000080660:c.T335A:p.M112K 7qE3 NA NA chr7 110591301 TCCxTGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 105 0 0 7.254059 0.088889 0.02 -0.412075 41 4 1130 112 60 60 0 0 AA 13.233305 44 0 1201 0 KEEP - Olfr605 YES AA_7 chr7 111078085 111078085 G A exonic Olfr631 synonymous SNV NM_001271020:c.G747A:p.V249V exonic Olfr631 synonymous SNV uc009iux.1:c.G747A:p.V249V exonic ENSMUSG00000042219 synonymous SNV ENSMUST00000106863:c.G747A:p.V249V 7qE3 NA NA chr7 111078085 TGTxCTT G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 97 0 0 15.751448 0.186047 0.02 -0.394565 35 8 979 209 60 60 0 0 GG 12.033031 40 0 1145 0 KEEP + Olfr631 NO AA_7 chr7 111882572 111882572 G C intergenic "Olfr663(dist=29455),Usp17le(dist=33991)" NA NA intergenic "Olfr663(dist=29455),Dub1a(dist=106199)" NA NA exonic ENSMUSG00000051885 nonsynonymous SNV ENSMUST00000063442:c.C305G:p.A102G 7qE3 NA NA chr7 111882572 CAGxCCT G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 75 0 0 11.06979 0.185185 0.02 -0.236745 22 5 608 143 60 60 0 0 GG 12.91986 43 0 1153 0 KEEP NA Olfr663 NO AA_7 chr7 114029728 114029728 A C exonic Olfr706 nonsynonymous SNV NM_146353:c.T602G:p.V201G exonic Olfr706 nonsynonymous SNV uc009jak.1:c.T602G:p.V201G exonic ENSMUSG00000043599 nonsynonymous SNV ENSMUST00000052535:c.T602G:p.V201G 7qE3 NA NA chr7 114029728 GTCxCAT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 0.999999 96 0 0 13.685343 0.140351 0.02 1.098534 49 8 1345 198 60 60 0 0 AA 10.8269 36 0 977 0 KEEP - Olfr706 NO AA_7 chr7 114029730 114029730 A T exonic Olfr706 stopgain SNV NM_146353:c.T600A:p.Y200X exonic Olfr706 stopgain SNV uc009jak.1:c.T600A:p.Y200X exonic ENSMUSG00000043599 stopgain SNV ENSMUST00000052535:c.T600A:p.Y200X 7qE3 NA NA chr7 114029730 CACxTAA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.984074 0.984161 0.999912 98 0 0 22.098347 0.172414 0.02 1.284974 48 10 1309 289 60 60 0 0 AA 11.126688 37 0 995 0 KEEP - Olfr706 YES AA_7 chr7 115238837 115238837 G A exonic Olfr482 synonymous SNV NM_146733:c.C246T:p.P82P exonic Olfr482 synonymous SNV uc009jbx.1:c.C246T:p.P82P exonic ENSMUSG00000059031 synonymous SNV ENSMUST00000081184:c.C246T:p.P82P 7qE3 NA NA chr7 115238837 ATTxGGT G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 240 0 0 15.537852 0.084906 0.02 2.363033 97 9 2738 246 60 60 0 0 GG 37.590431 125 0 3544 0 KEEP - Olfr482 NO AA_7 chr7 115268075 115268075 G A exonic Olfr484 nonsynonymous SNV NM_146499:c.C701T:p.T234I exonic Olfr484 nonsynonymous SNV uc009jbz.1:c.C701T:p.T234I exonic ENSMUSG00000059996 nonsynonymous SNV ENSMUST00000073580:c.C701T:p.T234I 7qE3 NA NA chr7 115268075 TCAxTGG G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 227 0 0 13.635156 0.129032 0.02 1.045352 54 8 1489 201 60 60 0 0 GG 40.305056 134 0 3738 0 KEEP - Olfr484 NO AA_7 chr7 115609326 115609326 A T exonic Olfr498 nonsynonymous SNV NM_146307:c.A487T:p.T163S exonic Olfr498 nonsynonymous SNV uc009jcl.1:c.A487T:p.T163S exonic ENSMUSG00000058679 nonsynonymous SNV ENSMUST00000074787:c.A487T:p.T163S 7qE3 NA NA chr7 115609326 TTCxCTC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 163 0 0 20.01247 0.117647 0.02 1.048268 75 10 2033 286 60 60 0 0 AA 21.343261 71 0 1891 0 KEEP + Olfr498 YES AA_7 chr7 115708637 115708637 T A exonic Olfr504 nonsynonymous SNV NM_001011858:c.A671T:p.Y224F exonic Olfr504 nonsynonymous SNV uc009jco.1:c.A671T:p.Y224F exonic ENSMUSG00000060105 nonsynonymous SNV ENSMUST00000075595:c.A671T:p.Y224F 7qE3 "Score=0.941164;Name=No.101575,chr7:111782411" NA chr7 115708637 GTAxATG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 216 0 0 14.873571 0.093023 0.02 0.941411 78 8 2070 226 60 60 0 0 TT 31.566395 105 0 2798 0 KEEP - Olfr504 YES AA_7 chr7 118224426 118224426 T A exonic Eif4g2 nonsynonymous SNV NM_001040131:c.A94T:p.T32S exonic Eif4g2 nonsynonymous SNV uc009jfy.1:c.A94T:p.T32S exonic ENSMUSG00000005610 nonsynonymous SNV ENSMUST00000106666:c.A94T:p.T32S 7qF1 NA NA chr7 118224426 CAGxCTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 117 1 0 13.590864 0.137255 0.02 1.248065 44 7 1210 191 60 60 0 0 TT 14.134256 47 0 1276 0 KEEP - Eif4g2 YES AA_7 chr7 123475929 123475929 T A exonic Rps13 nonsynonymous SNV NM_026533:c.A386T:p.Y129F exonic Rps13 nonsynonymous SNV uc009jje.2:c.A386T:p.Y129F exonic ENSMUSG00000090862 nonsynonymous SNV ENSMUST00000168160:c.A386T:p.Y129F 7qF1 NA NA chr7 123475929 TTAxAGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 114 0 1 10.065091 0.131579 0.02 -0.333185 33 5 887 141 60 60 0 0 TT 17.439372 58 0 1541 0 KEEP - Rps13 YES AA_7 chr7 13279538 13279538 T G exonic Vmn2r56 nonsynonymous SNV NM_001104648:c.A2149C:p.S717R exonic Vmn2r56 nonsynonymous SNV uc009veg.1:c.A2149C:p.S717R exonic ENSMUSG00000090762 nonsynonymous SNV ENSMUST00000163852:c.A2149C:p.S717R 7qA1 "Score=0.967068;Name=No.98185,chr7:13201734" NA chr7 13279538 CACxGCA T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 145 0 0 7.772533 0.084746 0.02 1.177913 54 5 1502 128 60 60 0 0 TT 19.547271 65 0 1782 0 KEEP - Vmn2r56 NO AA_7 chr7 134097441 134097441 T G intronic Sez6l2 NA NA intronic Sez6l2 NA NA intronic ENSMUSG00000030683 NA NA 7qF3 NA NA chr7 134097441 GTCxGAA T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.999859 48 0 0 11.266361 0.227273 0.02 -0.192926 17 5 479 140 60 60 0 0 TT 5.414023 18 0 498 0 KEEP + Sez6l2 NO AA_7 chr7 134355335 134355335 A G intronic Mylpf NA NA intronic Mylpf NA NA intronic ENSMUSG00000030672 NA NA 7qF3 NA NA chr7 134355335 AAAxAAA A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 113 0 0 27.020179 0.289474 0.02 -0.350772 27 11 755 317 60 60 0 2 AA 19.249219 64 0 1765 0 KEEP + Mylpf NO AA_7 chr7 134739597 134739597 A T exonic Rnf40 nonsynonymous SNV NM_172281:c.A1580T:p.H527L exonic Rnf40 nonsynonymous SNV uc009jwe.2:c.A1580T:p.H527L exonic ENSMUSG00000030816 nonsynonymous SNV ENSMUST00000033088:c.A1580T:p.H527L 7qF3 NA NA chr7 134739597 CCCxCTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926639 0.92664 0.999999 95 0 0 20.422145 0.2 0.02 -0.394317 36 9 960 259 60 60 0 0 AA 10.525487 35 0 944 0 KEEP + Rnf40 YES AA_7 chr7 137328707 137328707 T A intronic Fgfr2 NA NA intronic Fgfr2 NA NA intronic ENSMUSG00000030849 NA NA 7qF3 NA NA chr7 137328707 AGGxGCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 50 0 0 7.876454 0.208333 0.02 -0.209688 19 5 498 108 60 60 0 0 TT 5.70356 19 0 482 0 KEEP - Fgfr2 YES AA_7 chr7 138573444 138573444 T G intronic Acadsb NA NA UTR5 Acadsb NA NA intronic "ENSMUSG00000030849,ENSMUSG00000030861" NA NA 7qF3 NA NA chr7 138573444 TTTxTCT T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 70 0 0 17.215902 0.35 0.02 -0.175381 13 7 364 195 60 60 0 0 TT 11.129598 37 0 1037 0 KEEP + Acadsb NO AA_7 chr7 148993317 148993317 A T exonic Muc5ac nonsynonymous SNV NM_010844:c.A4456T:p.S1486C exonic Muc5ac nonsynonymous SNV uc009kmb.1:c.A4456T:p.S1486C exonic ENSMUSG00000037974 nonsynonymous SNV ENSMUST00000041924:c.A4456T:p.S1486C 7qF5 NA NA chr7 148993317 GTCxGCT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9266 0.92664 0.999957 76 0 0 7.459647 0.088889 0.02 -0.393256 41 4 1127 114 60 60 0 0 AA 7.51884 25 0 683 0 KEEP + Muc5ac YES AA_7 chr7 152453212 152453212 C T exonic Tpcn2 nonsynonymous SNV NM_146206:c.G1009A:p.E337K exonic Tpcn2 nonsynonymous SNV uc009kqx.1:c.G1009A:p.E337K exonic ENSMUSG00000048677 nonsynonymous SNV ENSMUST00000058022:c.G1009A:p.E337K 7qF5 NA NA chr7 152453212 ACTxAGG C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976863 0.976865 0.999997 100 0 0 167.387798 0.981481 0.02 1.213006 1 53 28 1443 60 60 0 0 CC 9.325834 31 0 891 0 KEEP - Tpcn2 NO AA_7 chr7 20043751 20043751 T A intronic Mark4 NA NA intronic Mark4 NA NA intronic ENSMUSG00000030397 NA NA 7qA3 NA NA chr7 20043751 GGCxGGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.457745 0.457757 0.999974 73 0 0 7.971013 0.190476 0.02 -0.192882 17 4 470 105 60 60 0 0 TT 11.36785 38 0 937 0 KEEP - Mark4 YES AA_7 chr7 20443455 20443455 G C UTR3 Gm19345 NA NA exonic AK043814 nonsynonymous SNV uc009fnl.1:c.G398C:p.S133T UTR3 ENSMUSG00000092216 NA NA 7qA3 NA NA chr7 20443455 GGAxCGA G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 75 0 0 9.706001 0.128205 0.02 -0.341911 34 5 917 138 60 60 0 0 GG 9.623682 32 0 868 0 KEEP + Gm19345 NO AA_7 chr7 24984655 24984655 T A exonic Zfp111 synonymous SNV NM_019940:c.A549T:p.V183V exonic Zfp111 synonymous SNV uc009foz.2:c.A549T:p.V183V exonic ENSMUSG00000087598 synonymous SNV ENSMUST00000056683:c.A552T:p.V184V 7qA3 NA NA chr7 24984655 ATGxACA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 91 0 0 12.446247 0.162162 0.02 -0.33309 31 6 819 167 60 60 0 0 TT 12.901957 43 0 1130 0 KEEP - Zfp111 YES AA_7 chr7 30323097 30323097 T A intergenic "Sipa1l3(dist=32618),Catsperg2(dist=159141)" NA NA intergenic "mKIAA0545(dist=19518),4930432E11Rik(dist=22437)" NA NA downstream ENSMUSG00000074224 NA NA 7qB1 NA NA chr7 30323097 CTTxAAG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 158 5 0 18.123597 0.134328 0.02 1.107735 58 9 1594 253 60 60 0 0 TT 20.446116 68 0 1840 0 KEEP NA Sipa1l3 YES AA_7 chr7 30323100 30323100 G C intergenic "Sipa1l3(dist=32621),Catsperg2(dist=159138)" NA NA intergenic "mKIAA0545(dist=19521),4930432E11Rik(dist=22434)" NA NA downstream ENSMUSG00000074224 NA NA 7qB1 NA NA chr7 30323100 TAAxCCA G C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 151 5 0 13.505102 0.111111 0.02 1.142759 56 7 1577 197 60 60 0 0 GG 17.674473 66 1 1846 20 KEEP NA Sipa1l3 NO AA_7 chr7 31419020 31419020 G A exonic Etv2 synonymous SNV NM_007959:c.C795T:p.C265C exonic Etv2 synonymous SNV uc009gfm.1:c.C795T:p.C265C exonic ENSMUSG00000006311 synonymous SNV ENSMUST00000108147:c.C795T:p.C265C 7qB1 NA NA chr7 31419020 GTCxCAC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 38 0 0 8.572211 0.222222 0.02 -0.15762 14 4 322 108 60 60 0 0 GG 4.807307 16 0 397 0 KEEP - Etv2 NO AA_7 chr7 34064716 34064716 T A exonic Scgb2b19 synonymous SNV NM_001199336:c.A159T:p.A53A exonic LOC545947 synonymous SNV uc012fid.1:c.A159T:p.A53A intergenic "ENSMUSG00000062536(dist=114022),ENSMUSG00000061795(dist=84646)" NA NA 7qB1 "Score=0.988839;Name=No.100668,chr7:32693861" NA chr7 34064716 CTCxGCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 149 1 12 9.789051 0.121951 0.02 -0.359563 36 5 1036 140 60 60 0 0 TT 21.654319 72 0 1997 0 KEEP - Scgb2b19 YES AA_7 chr7 34064719 34064719 A T exonic Scgb2b19 synonymous SNV NM_001199336:c.T156A:p.T52T exonic LOC545947 synonymous SNV uc012fid.1:c.T156A:p.T52T intergenic "ENSMUSG00000062536(dist=114025),ENSMUSG00000061795(dist=84643)" NA NA 7qB1 "Score=0.988839;Name=No.100668,chr7:32693861" NA chr7 34064719 TGCxGTA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 148 1 12 9.789189 0.121951 0.02 -0.359543 36 5 1015 140 60 60 0 0 AA 21.655774 72 0 1988 0 KEEP - Scgb2b19 YES AA_7 chr7 35043043 35043043 T A exonic 4931406P16Rik nonsynonymous SNV NM_172741:c.A823T:p.S275C exonic 4931406P16Rik nonsynonymous SNV uc009giz.1:c.A823T:p.S275C exonic ENSMUSG00000066571 nonsynonymous SNV ENSMUST00000085592:c.A823T:p.S275C 7qB1 NA NA chr7 35043043 CACxGTC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 60 0 0 8.096273 0.173913 0.02 -0.201692 19 4 538 108 60 60 0 0 TT 9.0233 30 0 830 0 KEEP - 4931406P16Rik YES AA_7 chr7 35906578 35906578 A T UTR3 Cebpa NA NA UTR3 Cebpa NA NA UTR3 ENSMUSG00000034957 NA NA 7qB1 NA NA chr7 35906578 GGAxGGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 95 0 0 7.609856 0.108108 0.02 -0.324478 33 4 943 112 60 60 0 0 AA 11.695215 39 0 1052 0 KEEP + Cebpa YES AA_7 chr7 4321800 4321800 G A exonic Gp6 nonsynonymous SNV NM_001163014:c.C725T:p.P242L exonic Gp6 nonsynonymous SNV uc012ews.1:c.C674T:p.P225L exonic ENSMUSG00000078810 nonsynonymous SNV ENSMUST00000166133:c.C674T:p.P225L 7qA1 NA NA chr7 4321800 ATAxGCT G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 209 3 0 17.982808 0.109756 0.02 0.976143 73 9 2053 260 60 60 0 0 GG 26.752664 89 0 2472 0 KEEP - Gp6 NO AA_7 chr7 50159351 50159351 G A exonic Vmn2r63 nonsynonymous SNV NM_001105060:c.C1850T:p.P617L exonic Vmn2r63 nonsynonymous SNV uc012fja.1:c.C1850T:p.P617L exonic ENSMUSG00000090751 nonsynonymous SNV ENSMUST00000163803:c.C1850T:p.P617L 7qB4 "Score=0.922504;Name=No.101301,chr7:50000000" NA chr7 50159351 ATGxGTG G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 351 0 62 22.290054 0.120879 0.02 0.995558 80 11 2236 316 60 60 0 0 GG 57.438921 191 0 5334 0 KEEP - Vmn2r63 NO AA_7 chr7 50278961 50278961 T A exonic Gm9268 synonymous SNV NM_001105061:c.T417A:p.T139T exonic Gm9268 synonymous SNV uc012fjb.1:c.T417A:p.T139T exonic ENSMUSG00000091528 synonymous SNV ENSMUST00000166914:c.T438A:p.T146T 7qB4 "Score=0.992582;Name=No.101303,chr7:50006879" NA chr7 50278961 CACxGGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 116 0 15 14.797645 0.155556 0.02 -0.394648 38 7 1095 199 60 46 0 0 TT 16.53355 55 0 1517 0 KEEP + Gm9268 YES AA_7 chr7 51447252 51447252 T A splicing Klk1b24(NM_010643:exon4:c.636+2T>A) NA NA splicing Klk1b24(uc009gok.1:exon4:c.636+2T>A) NA NA splicing ENSMUSG00000063713(ENSMUST00000073713:exon4:c.636+2T>A) NA NA 7qB4 "Score=0.904464;Name=No.101334,chr7:51299020" NA chr7 51447252 CGGxAAG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 148 0 1 11.202036 0.1 0.02 1.160384 54 6 1452 168 60 60 0 0 TT 21.349347 71 0 1890 0 KEEP + Klk1b24 YES AA_7 chr7 51842118 51842118 G A exonic Napsa nonsynonymous SNV NM_008437:c.G1210A:p.A404T exonic Napsa nonsynonymous SNV uc009gqf.1:c.G1210A:p.A404T exonic ENSMUSG00000002204 nonsynonymous SNV ENSMUST00000002274:c.G1210A:p.A404T 7qB4 NA NA chr7 51842118 CGGxCAG G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 157 0 0 17.22549 0.134328 0.02 1.107717 58 9 1620 244 60 60 0 0 GG 23.09376 77 0 2072 0 KEEP + Napsa NO AA_7 chr7 52160076 52160076 A G exonic Ap2a1 synonymous SNV NM_001077264:c.T1500C:p.G500G exonic Ap2a1 synonymous SNV uc009grv.1:c.T1500C:p.G500G exonic ENSMUSG00000060279 synonymous SNV ENSMUST00000085399:c.T1500C:p.G500G 7qB4 NA NA chr7 52160076 GCCxCCG A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 391 1 0 21.601232 0.10687 0.02 2.021054 117 14 3125 342 60 60 0 0 AA 60.741571 202 0 5418 0 KEEP - Ap2a1 NO AA_7 chr7 52226678 52226678 C G exonic Cpt1c nonsynonymous SNV NM_001252470:c.G381C:p.R127S exonic Cpt1c nonsynonymous SNV uc009gsb.1:c.G381C:p.R127S exonic ENSMUSG00000007783 nonsynonymous SNV ENSMUST00000063761:c.G381C:p.R127S 7qB4 NA NA chr7 52226678 GAGxCTC C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.194952 0.196312 0.993072 26 0 0 9.371438 0.285714 0.02 -0.122764 10 4 278 111 60 60 0 0 CC 3.307008 11 0 292 0 KEEP - Cpt1c NO AA_7 chr7 52237113 52237113 T G exonic Prmt1 nonsynonymous SNV NM_001252476:c.A289C:p.I97L exonic Prmt1 nonsynonymous SNV uc009gsf.1:c.A292C:p.I98L exonic ENSMUSG00000052429 nonsynonymous SNV ENSMUST00000107840:c.A184C:p.I62L 7qB4 NA NA chr7 52237113 CAAxAAC T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 194 0 0 11.423864 0.088608 0.02 0.995321 72 7 1830 183 60 60 0 0 TT 26.4038 88 0 2245 0 KEEP - Prmt1 NO AA_7 chr7 52625594 52625594 A G exonic Lin7b nonsynonymous SNV NM_011698:c.T59C:p.L20P exonic Lin7b nonsynonymous SNV uc009guv.1:c.T59C:p.L20P exonic ENSMUSG00000003872 nonsynonymous SNV ENSMUST00000003971:c.T59C:p.L20P 7qB4 NA NA chr7 52625594 AGCxGCT A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076902 0.077336 0.994391 24 0 0 13.097796 0.555556 0.02 -0.078906 4 5 110 134 60 60 0 0 AA 3.91026 13 0 362 0 KEEP - Lin7b NO AA_7 chr7 52890432 52890432 T A exonic Rasip1 nonsynonymous SNV NM_028544:c.T1949A:p.L650Q exonic Rasip1 nonsynonymous SNV uc009gwi.1:c.T1949A:p.L650Q exonic ENSMUSG00000044562 nonsynonymous SNV ENSMUST00000169608:c.T869A:p.L290Q 7qB4 NA NA chr7 52890432 AGCxGTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 168 0 0 21.084269 0.16129 0.02 1.151728 52 10 1443 282 60 60 0 0 TT 27.364073 91 0 2488 0 KEEP + Rasip1 YES AA_7 chr7 57170098 57170098 A G exonic Slc6a5 nonsynonymous SNV NM_148931:c.A539G:p.D180G exonic Slc6a5 nonsynonymous SNV uc009hbv.2:c.A563G:p.D188G exonic ENSMUSG00000039728 nonsynonymous SNV ENSMUST00000107605:c.A539G:p.D180G 7qB5 NA NA chr7 57170098 GGGxTGA A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 56 0 0 10.770028 0.185185 0.02 -0.236744 22 5 609 140 60 60 0 0 AA 7.5181 25 0 673 0 KEEP + Slc6a5 NO AA_7 chr7 63153155 63153155 G T intronic Cyfip1 NA NA UTR5 Shyc NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63153155 ACGxCTC G T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 129 0 0 16.014309 0.156863 0.02 1.249381 43 8 1131 218 60 60 0 0 GG 19.846604 66 0 1834 0 KEEP + Cyfip1 NO AA_7 chr7 6468053 6468053 A T exonic Olfr1349 nonsynonymous SNV NM_207136:c.T86A:p.V29E exonic Olfr1349 nonsynonymous SNV uc009fbr.1:c.T86A:p.V29E exonic ENSMUSG00000048067 nonsynonymous SNV ENSMUST00000051982:c.T86A:p.V29E 7qA1 NA NA chr7 6468053 GGCxCGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 90 0 0 10.332802 0.119048 0.02 -0.368259 37 5 1005 146 60 60 0 0 AA 12.623676 42 0 1101 0 KEEP - Olfr1349 YES AA_7 chr7 79818216 79818216 T A intergenic "Mctp2(dist=366735),Gm6567(dist=424422)" NA NA intergenic "Mctp2(dist=366735),DQ546052(dist=431041)" NA NA exonic ENSMUSG00000070035 nonsynonymous SNV ENSMUST00000071888:c.T513A:p.D171E 7qD1 NA NA chr7 79818216 CGAxAGC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 218 2 11 12.318349 0.081395 0.02 0.941427 79 7 2114 195 60 60 0 0 TT 30.061169 100 0 2636 0 KEEP NA Mctp2 YES AA_7 chr7 93312723 93312723 C G exonic Vmn2r75 nonsynonymous SNV NM_001102578:c.G1380C:p.E460D exonic Vmn2r75 nonsynonymous SNV uc009ven.1:c.G1380C:p.E460D exonic ENSMUSG00000090436 nonsynonymous SNV ENSMUST00000167830:c.G1380C:p.E460D 7qD3 "Score=0.897409;Name=No.101508,chr7:92449435" NA chr7 93312723 ATAxTCT C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 197 0 0 30.828007 0.233333 0.02 1.169112 46 14 1272 383 60 60 0 0 CC 35.185304 117 0 3297 0 KEEP - Vmn2r75 NO AA_7 chr7 99768147 99768147 G T exonic Ankrd42 nonsynonymous SNV NM_028665:c.C497A:p.A166E exonic Ankrd42 nonsynonymous SNV uc009ihx.2:c.C497A:p.A166E exonic ENSMUSG00000041343 nonsynonymous SNV ENSMUST00000056106:c.C497A:p.A166E 7qE1 NA NA chr7 99768147 GATxCAT G T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 74 0 0 8.363851 0.153846 0.02 -0.227997 22 4 619 113 60 60 0 0 GG 11.129821 37 0 1047 0 KEEP - Ankrd42 NO AA_7 chr8 108351697 108351697 T A exonic Tsnaxip1 nonsynonymous SNV NM_024445:c.T11A:p.L4Q exonic Tsnaxip1 nonsynonymous SNV uc009nee.1:c.T11A:p.L4Q exonic ENSMUSG00000031893 nonsynonymous SNV ENSMUST00000034365:c.T11A:p.L4Q 8qD3 NA NA chr8 108351697 ACCxACA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 165 0 0 20.330368 0.131579 0.02 1.028923 66 10 1791 284 60 60 0 0 TT 20.450264 68 0 1846 0 KEEP + Tsnaxip1 YES AA_7 chr8 11439322 11439322 A T exonic Col4a2 synonymous SNV NM_009932:c.A3456T:p.T1152T exonic Col4a2 synonymous SNV uc009kvc.2:c.A3456T:p.T1152T exonic ENSMUSG00000031503 synonymous SNV ENSMUST00000033899:c.A3456T:p.T1152T 8qA1.1 NA NA chr8 11439322 CACxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 283 0 0 20.95521 0.098361 0.02 2.410259 110 12 3120 322 60 60 0 0 AA 34.564554 115 0 3131 0 KEEP + Col4a2 YES AA_7 chr8 116223031 116223031 T A intronic Adamts18 NA NA intronic Adamts18 NA NA intronic ENSMUSG00000053399 NA NA 8qE1 NA NA chr8 116223031 GCCxTCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.688863 0.693668 0.993072 44 0 0 10.019376 0.166667 0.02 -0.263072 25 5 702 135 60 60 0 0 TT 3.308239 11 0 303 0 KEEP - Adamts18 YES AA_7 chr8 123628354 123628354 T A exonic Mthfsd nonsynonymous SNV NM_001166482:c.A286T:p.N96Y exonic Mthfsd nonsynonymous SNV uc009nro.1:c.A286T:p.N96Y exonic ENSMUSG00000031816 nonsynonymous SNV ENSMUST00000047282:c.A229T:p.N77Y 8qE1 NA NA chr8 123628354 TGTxAAA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 298 0 0 30.42808 0.120301 0.02 2.126438 117 16 3172 440 60 60 0 1 TT 35.182994 117 0 3156 0 KEEP - Mthfsd YES AA_7 chr8 124884293 124884293 A T exonic Trhr2 nonsynonymous SNV NM_133202:c.T307A:p.Y103N exonic Trhr2 nonsynonymous SNV uc009nsk.1:c.T307A:p.Y103N exonic ENSMUSG00000039079 nonsynonymous SNV ENSMUST00000044123:c.T307A:p.Y103N 8qE1 NA NA chr8 124884293 GGTxCTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 88 0 0 15.173665 0.179487 0.02 -0.341921 32 7 846 198 60 60 0 0 AA 11.122188 37 0 978 0 KEEP - Trhr2 YES AA_7 chr8 127129629 127129629 T G exonic Capn9 nonsynonymous SNV NM_023709:c.T1306G:p.F436V exonic Capn9 nonsynonymous SNV uc009nxf.2:c.T1306G:p.F436V exonic ENSMUSG00000031981 nonsynonymous SNV ENSMUST00000093033:c.T1306G:p.F436V 8qE2 NA NA chr8 127129629 GACxTTT T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888874 0.888875 0.999999 82 0 0 34.086704 0.583333 0.02 -0.359395 10 14 274 345 60 60 0 0 TT 10.828047 36 0 999 0 KEEP + Capn9 NO AA_7 chr8 128260053 128260053 A C exonic Ntpcr nonsynonymous SNV NM_025636:c.A120C:p.E40D exonic Ntpcr nonsynonymous SNV uc009nyj.2:c.A120C:p.E40D exonic ENSMUSG00000031851 nonsynonymous SNV ENSMUST00000034313:c.A120C:p.E40D 8qE2 NA NA chr8 128260053 AGAxGTC A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918107 0.918171 0.999931 77 0 0 15.164252 0.181818 0.02 -0.385809 36 8 1016 204 60 60 0 0 AA 7.519264 25 0 690 0 KEEP + Ntpcr NO AA_7 chr8 19687630 19687630 T A intergenic "Defb7(dist=189855),Gm21119(dist=41946)" NA NA ncRNA_exonic AK134636 NA NA UTR5 ENSMUSG00000087153 NA NA 8qA1.3 "Score=0.984202;Name=No.103897,chr8:19917208" NA chr8 19687630 TGAxGGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.639957 0.641347 0.997832 47 0 1 8.293244 0.148148 0.02 -0.245506 23 4 618 113 60 60 0 0 TT 5.111273 17 0 447 0 KEEP + Defb7 YES AA_7 chr8 23257451 23257451 T A exonic Nek3 nonsynonymous SNV NM_001162947:c.A823T:p.I275L exonic Nek3 nonsynonymous SNV uc012gbb.1:c.A823T:p.I275L exonic ENSMUSG00000031478 nonsynonymous SNV ENSMUST00000033865:c.A823T:p.I275L 8qA2 NA NA chr8 23257451 ATAxCTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 105 2 0 11.299128 0.111111 0.02 1.223038 48 6 1337 166 60 60 0 0 TT 11.129112 37 0 1029 0 KEEP - Nek3 YES AA_7 chr8 24219694 24219694 T A intronic Ank1 NA NA intronic Ank1 NA NA intronic ENSMUSG00000031543 NA NA 8qA2 NA NA chr8 24219694 CTCxCTC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 226 1 0 28.399144 0.162791 0.02 0.941064 72 14 2064 383 60 60 0 0 TT 33.988154 113 0 3157 0 KEEP + Ank1 YES AA_7 chr8 25821906 25821906 T A exonic Adam3 nonsynonymous SNV NM_009619:c.A702T:p.L234F exonic Adam3 nonsynonymous SNV uc009lfc.1:c.A702T:p.L234F exonic ENSMUSG00000031553 nonsynonymous SNV ENSMUST00000033958:c.A702T:p.L234F 8qA2 NA NA chr8 25821906 GTTxAAC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986018 0.986153 0.999863 84 0 0 10.948692 0.101695 0.02 1.17788 53 6 1456 165 60 60 0 0 TT 6.01461 20 0 539 0 KEEP - Adam3 YES AA_7 chr8 25924027 25924027 T A exonic Adam5 nonsynonymous SNV NM_001272057:c.A355T:p.I119L exonic Adam5 nonsynonymous SNV uc009lff.1:c.A355T:p.I119L exonic ENSMUSG00000031554 nonsynonymous SNV ENSMUST00000050300:c.A355T:p.I119L 8qA2 NA NA chr8 25924027 GTAxGAT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 111 2 0 31.883526 0.245614 0.02 1.19542 43 14 1193 390 60 60 0 0 TT 12.921359 43 0 1146 0 KEEP - Adam5 YES AA_7 chr8 30527948 30527948 T A intergenic "Unc5d(dist=197840),4933433F19Rik(dist=1150919)" NA NA intergenic "Unc5d(dist=197840),Dusp26(dist=1672186)" NA NA intergenic "ENSMUSG00000063626(dist=198138),ENSMUSG00000039661(dist=1671995)" NA NA 8qA3 "Score=0.950475;Name=No.101955,chr7:29015222" NA chr8 30527948 AATxAGG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 112 2 5 24.145556 0.234043 0.02 -0.412126 36 11 1003 300 60 60 0 0 TT 15.038287 50 0 1377 0 KEEP NA Unc5d YES AA_7 chr8 3873846 3873846 A C exonic Cd209d synonymous SNV NM_130904:c.T453G:p.T151T exonic Cd209d synonymous SNV uc012fyv.1:c.T363G:p.T121T exonic ENSMUSG00000031495 synonymous SNV ENSMUST00000111028:c.T363G:p.T121T 8qA1.1 NA NA chr8 3873846 GAAxGTC A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.800025 0.800245 0.999725 81 0 0 39.733742 0.514286 0.02 -0.306739 17 18 488 417 60 60 0 0 AA 9.926304 33 0 925 0 KEEP - Cd209d NO AA_7 chr8 42107801 42107801 T A exonic Mtus1 nonsynonymous SNV NM_001005865:c.A269T:p.Q90L exonic Mtus1 nonsynonymous SNV uc009lnk.1:c.A269T:p.Q90L exonic ENSMUSG00000045636 nonsynonymous SNV ENSMUST00000046161:c.A269T:p.Q90L 8qA4 NA NA chr8 42107801 AGCxGTC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 102 0 0 13.684735 0.125 0.02 1.106252 49 7 1399 195 60 60 0 0 TT 11.119823 37 0 1015 0 KEEP - Mtus1 YES AA_7 chr8 44737909 44737909 A T exonic Adam34 nonsynonymous SNV NM_145745:c.T52A:p.C18S exonic Adam34 nonsynonymous SNV uc009loi.2:c.T52A:p.C18S exonic ENSMUSG00000079058 nonsynonymous SNV ENSMUST00000110411:c.T52A:p.C18S 8qA4 "Score=0.944875;Name=No.104124,chr8:44738701" NA chr8 44737909 GGCxGAA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 508 0 0 15.418369 0.044715 0.02 4.526022 235 11 6652 295 60 60 0 0 AA 60.153199 200 0 5534 0 KEEP - Adam34 YES AA_7 chr8 4520172 4520172 A T intronic Cers4 NA NA intronic Lass4 NA NA intronic ENSMUSG00000008206 NA NA 8qA1.1 NA NA chr8 4520172 TAGxACC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 319 0 0 14.443609 0.062893 0.02 3.293263 149 10 4189 258 60 60 0 0 AA 38.164912 127 0 3461 0 KEEP + Cers4 YES AA_7 chr8 4744470 4744470 T A exonic Shcbp1 nonsynonymous SNV NM_011369:c.A1322T:p.H441L exonic Shcbp1 nonsynonymous SNV uc009kua.1:c.A1322T:p.H441L exonic ENSMUSG00000022322 nonsynonymous SNV ENSMUST00000022945:c.A1322T:p.H441L 8qA1.1 NA NA chr8 4744470 TCAxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 164 0 0 15.189527 0.098765 0.02 0.984967 73 8 2005 227 60 60 0 0 TT 18.335959 61 0 1636 0 KEEP - Shcbp1 YES AA_7 chr8 55266019 55266019 T A intronic Vegfc NA NA intronic Vegfc NA NA intronic ENSMUSG00000031520 NA NA 8qB1.3 NA NA chr8 55266019 TTCxGTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 76 0 0 26.78683 0.314286 0.02 -0.306925 24 11 682 310 60 60 0 0 TT 10.227119 34 0 952 0 KEEP + Vegfc YES AA_7 chr8 72904118 72904118 T A exonic Comp nonsynonymous SNV NM_016685:c.T1826A:p.V609E exonic Comp nonsynonymous SNV uc009mad.2:c.T1826A:p.V609E exonic ENSMUSG00000031849 nonsynonymous SNV ENSMUST00000003659:c.T1826A:p.V609E 8qB3.3 NA NA chr8 72904118 ACGxAGT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 179 1 0 10.522458 0.075 0.02 0.993938 74 6 1943 169 60 60 0 0 TT 25.860816 86 0 2292 0 KEEP + Comp YES AA_7 chr8 74235400 74235400 T A splicing Fcho1(NM_028715:exon21:c.1586-2A>T) NA NA splicing Fcho1(uc009met.2:exon21:c.1586-2A>T) NA NA splicing "ENSMUSG00000070000(ENSMUST00000093444:exon20:c.1586-2A>T,ENSMUST00000146100:exon21:c.1586-2A>T,ENSMUST00000136640:exon21:c.1590-2A>T)" NA NA 8qB3.3 NA NA chr8 74235400 ATCxAGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 218 2 0 15.969847 0.077586 0.02 2.373482 107 9 2898 254 60 60 0 0 TT 23.74686 79 0 2105 0 KEEP - Fcho1 YES AA_7 chr8 77745851 77745851 T G exonic Rasd2 nonsynonymous SNV NM_029182:c.T505G:p.F169V exonic Rasd2 nonsynonymous SNV uc009mhg.2:c.T505G:p.F169V exonic ENSMUSG00000034472 nonsynonymous SNV ENSMUST00000132133:c.T505G:p.F169V 8qC1 NA NA chr8 77745851 TACxTCG T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 110 0 0 7.411551 0.086207 0.02 1.088753 53 5 1503 124 60 60 0 0 TT 12.934031 43 0 1201 0 KEEP + Rasd2 NO AA_7 chr8 87453110 87453110 T A intronic Mast1 NA NA intronic Mast1 NA NA intronic ENSMUSG00000053693 NA NA 8qC3 NA NA chr8 87453110 CAGxGCC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979525 0.979526 0.999999 103 0 0 54.149346 0.388889 0.02 1.213006 33 21 882 598 60 60 0 0 TT 10.518754 35 0 912 0 KEEP - Mast1 YES AA_7 chr8 91231065 91231065 C T exonic Cyld synonymous SNV NM_001128170:c.C582T:p.G194G exonic Cyld synonymous SNV uc009mrt.2:c.C582T:p.G194G exonic ENSMUSG00000036712 synonymous SNV ENSMUST00000098519:c.C582T:p.G194G 8qC3 NA NA chr8 91231065 TGGxGTG C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 118 0 0 8.687159 0.081967 0.02 1.062836 56 5 1420 138 60 60 0 0 CC 12.622792 42 0 1075 0 KEEP + Cyld NO AA_7 chr8 95202613 95202613 T A exonic Irx6 nonsynonymous SNV NM_022428:c.T1209A:p.F403L exonic Irx6 nonsynonymous SNV uc009muc.1:c.T1209A:p.F403L exonic ENSMUSG00000031738 nonsynonymous SNV ENSMUST00000034185:c.T1209A:p.F403L 8qC5 NA NA chr8 95202613 TTTxGGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877601 0.877708 0.999879 70 0 0 14.401426 0.175 0.02 -0.349593 33 7 848 191 60 60 0 0 TT 6.616982 22 0 606 0 KEEP + Irx6 YES AA_7 chr8 95829801 95829801 A T intronic Ces1g NA NA intronic Ces1g NA NA intronic ENSMUSG00000057074 NA NA 8qC5 NA NA chr8 95829801 AGAxGGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 256 0 0 15.302643 0.076271 0.02 2.15989 109 9 3101 248 70 60 0 1 AA 36.086336 120 0 3346 0 KEEP - Ces1g YES AA_7 chr8 96805159 96805159 T C intronic Nup93 NA NA intronic Nup93 NA NA intronic ENSMUSG00000032939 NA NA 8qC5 NA NA chr8 96805159 TACxTCA T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865652 0.865745 0.999892 67 0 0 25.473635 0.282051 0.02 -0.341991 28 11 791 303 60 60 0 0 TT 6.918357 23 0 644 0 KEEP + Nup93 NO AA_7 chr9 102626053 102626053 A T exonic Amotl2 nonsynonymous SNV NM_019764:c.A889T:p.S297C exonic Amotl2 nonsynonymous SNV uc009rfx.1:c.A889T:p.S297C exonic ENSMUSG00000032531 nonsynonymous SNV ENSMUST00000035121:c.A889T:p.S297C 9qF1 NA NA chr9 102626053 CCCxGTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 108 0 0 11.34704 0.101695 0.02 1.177814 53 6 1514 169 60 60 0 0 AA 12.632518 42 0 1162 0 KEEP + Amotl2 YES AA_7 chr9 105601368 105601368 C T exonic Col6a6 nonsynonymous SNV NM_001102607:c.G6122A:p.R2041H exonic Col6a6 nonsynonymous SNV uc009ris.1:c.G6122A:p.R2041H exonic ENSMUSG00000043719 nonsynonymous SNV ENSMUST00000098441:c.G6122A:p.R2041H 9qF1 NA NA chr9 105601368 AGGxGCT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999998 88 0 0 11.958001 0.146341 0.02 -0.359256 35 6 874 165 60 60 0 0 CC 10.217507 34 0 861 0 KEEP - Col6a6 NO AA_7 chr9 107834682 107834682 A T UTR3 Actl11 NA NA UTR3 4921517D21Rik NA NA UTR3 ENSMUSG00000066368 NA NA 9qF1 NA NA chr9 107834682 ACCxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 143 0 0 16.431368 0.131148 0.02 1.160371 53 8 1437 229 60 60 0 0 AA 18.917897 63 0 1668 0 KEEP + Actl11 YES AA_7 chr9 108017344 108017344 C G exonic Bsn nonsynonymous SNV NM_007567:c.G3539C:p.G1180A exonic Bsn nonsynonymous SNV uc009rov.1:c.G3539C:p.G1180A exonic ENSMUSG00000032589 nonsynonymous SNV ENSMUST00000035208:c.G3539C:p.G1180A 9qF2 NA NA chr9 108017344 CTGxCCG C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 180 2 0 8.297398 0.060241 0.02 0.96804 78 5 2132 141 60 60 0 0 CC 22.838829 76 0 2094 0 KEEP - Bsn NO AA_7 chr9 108863802 108863802 A T intronic Col7a1 NA NA intronic Col7a1 NA NA intronic ENSMUSG00000025650 NA NA 9qF2 NA NA chr9 108863802 CCTxGTA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 178 0 0 16.012325 0.126984 0.02 1.134074 55 8 1493 226 60 60 0 0 AA 25.863401 86 0 2350 0 KEEP + Col7a1 YES AA_7 chr9 108884435 108884435 A T intronic Col7a1 NA NA intronic Col7a1 NA NA intronic ENSMUSG00000025650 NA NA 9qF2 NA NA chr9 108884435 GATxCCC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 113 0 0 9.21229 0.079365 0.02 1.143254 58 5 1511 144 60 60 0 0 AA 9.750904 38 1 970 15 KEEP + Col7a1 YES AA_7 chr9 109239883 109239883 A T exonic Fbxw28 nonsynonymous SNV NM_001177419:c.T310A:p.W104R exonic Fbxw28 nonsynonymous SNV uc009rsg.2:c.T310A:p.W104R exonic ENSMUSG00000079284 nonsynonymous SNV ENSMUST00000112039:c.T310A:p.W104R 9qF2 "Score=0.928854;Name=No.105615,chr9:109159899" NA chr9 109239883 ACCxTGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 417 1 40 11.502062 0.058824 0.02 2.347035 112 7 3057 197 60 60 0 0 AA 69.156222 230 0 6193 0 KEEP - Fbxw28 YES AA_7 chr9 109602719 109602719 T A intronic Fbxw18 NA NA intronic Fbxw18 NA NA intronic ENSMUSG00000074059 NA NA 9qF2 NA NA chr9 109602719 CTAxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 294 0 0 14.947958 0.089888 0.02 0.914977 81 8 2203 228 60 60 0 0 TT 47.209374 157 0 4241 0 KEEP - Fbxw18 YES AA_7 chr9 111968310 111968310 A T exonic Arpp21 nonsynonymous SNV NM_001177616:c.T2329A:p.C777S exonic Arpp21 nonsynonymous SNV uc009rvy.2:c.T2284A:p.C762S exonic ENSMUSG00000032503 nonsynonymous SNV ENSMUST00000162065:c.T2389A:p.C797S 9qF3 NA NA chr9 111968310 CACxGTT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967424 0.967425 0.999999 94 0 0 22.314091 0.196078 0.02 1.248011 41 10 1139 285 60 60 0 0 AA 10.799564 36 0 947 0 KEEP - Arpp21 YES AA_7 chr9 114401099 114401099 A T exonic Ccr4 nonsynonymous SNV NM_009916:c.T1015A:p.S339T exonic Ccr4 nonsynonymous SNV uc009rxo.2:c.T1015A:p.S339T exonic ENSMUSG00000047898 nonsynonymous SNV ENSMUST00000054414:c.T1015A:p.S339T 9qF3 NA NA chr9 114401099 CCGxGTA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 77 0 0 7.510428 0.108108 0.02 -0.324433 33 4 931 111 60 60 0 0 AA 9.621882 32 0 879 0 KEEP - Ccr4 YES AA_7 chr9 118436263 118436263 T G exonic Golga4 nonsynonymous SNV NM_018748:c.T364G:p.S122A exonic Golga4 nonsynonymous SNV uc009rzr.1:c.T364G:p.S122A exonic ENSMUSG00000038708 nonsynonymous SNV ENSMUST00000084820:c.T364G:p.S122A 9qF3 NA NA chr9 118436263 GAGxCCT T G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 132 0 0 24.862305 0.23913 0.02 -0.403374 35 11 979 306 60 60 0 0 TT 19.547661 65 0 1770 0 KEEP + Golga4 NO AA_7 chr9 119250600 119250600 A T UTR5 Acaa1a NA NA UTR5 Acaa1a NA NA UTR5 ENSMUSG00000036138 NA NA 9qF3 NA NA chr9 119250600 CAGxACC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 137 2 0 9.375764 0.111111 0.02 -0.394623 40 5 1137 138 60 60 0 0 AA 18.646808 62 0 1710 0 KEEP + Acaa1a YES AA_7 chr9 120045232 120045232 A T intergenic "Rpsa(dist=3745),Mobp(dist=13628)" NA NA intergenic "Rpsa(dist=3745),Mobp(dist=13628)" NA NA intergenic "ENSMUSG00000032518(dist=3745),ENSMUSG00000032517(dist=13628)" NA NA 9qF4 NA NA chr9 120045232 TCAxGGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 220 0 0 16.097311 0.092784 0.02 0.746693 88 9 2511 248 60 60 0 0 AA 30.074367 100 0 2778 0 KEEP NA Rpsa YES AA_7 chr9 120486756 120486756 A T ncRNA_exonic 5830454E08Rik NA NA intergenic "Rpl14(dist=2986),AK019838(dist=346817)" NA NA exonic ENSMUSG00000052658 synonymous SNV ENSMUST00000064646:c.A276T:p.R92R 9qF4 NA NA chr9 120486756 CCGxGGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 129 0 0 18.713884 0.169811 0.02 1.230456 44 9 1247 249 60 60 0 0 AA 18.887786 63 0 1736 0 KEEP NA 5830454E08Rik YES AA_7 chr9 122110938 122110938 T A exonic Ano10 nonsynonymous SNV NM_001271873:c.A1691T:p.Q564L exonic Ano10 nonsynonymous SNV uc009seu.1:c.A1193T:p.Q398L exonic ENSMUSG00000037949 nonsynonymous SNV ENSMUST00000042546:c.A1865T:p.Q622L 9qF4 NA NA chr9 122110938 TTCxGTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 70 3 0 28.388376 0.37931 0.02 -0.254317 18 11 508 315 60 60 0 0 TT 10.224831 34 0 920 0 KEEP - Ano10 YES AA_7 chr9 123345350 123345350 A T exonic Lars2 nonsynonymous SNV NM_153168:c.A1352T:p.Q451L exonic Lars2 nonsynonymous SNV uc009sgd.1:c.A1352T:p.Q451L exonic ENSMUSG00000035202 nonsynonymous SNV ENSMUST00000038863:c.A1352T:p.Q451L 9qF4 NA NA chr9 123345350 GGCxGCG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 313 4 0 27.061276 0.108527 0.02 2.259615 115 14 3242 396 60 60 0 0 AA 43.268866 144 0 3888 0 KEEP + Lars2 YES AA_7 chr9 15066813 15066813 G A exonic Med17 nonsynonymous SNV NM_144933:c.C1808T:p.P603L exonic Med17 nonsynonymous SNV uc009ofl.1:c.C1808T:p.P603L exonic ENSMUSG00000031935 nonsynonymous SNV ENSMUST00000034411:c.C1808T:p.P603L 9qA2 NA NA chr9 15066813 TTCxGAA G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 148 1 0 13.718479 0.118644 0.02 1.178216 52 7 1341 197 60 60 0 0 GG 20.123024 67 0 1724 0 KEEP - Med17 NO AA_7 chr9 18289118 18289118 A T exonic Mbd3l1 nonsynonymous SNV NM_028557:c.A94T:p.T32S exonic Mbd3l1 nonsynonymous SNV uc009ogu.1:c.A94T:p.T32S exonic ENSMUSG00000038691 nonsynonymous SNV ENSMUST00000069218:c.A94T:p.T32S 9qA2 NA NA chr9 18289118 TATxCAT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.692164 0.693668 0.997832 47 0 0 8.196511 0.133333 0.02 -0.263037 26 4 697 114 60 60 0 0 AA 4.811231 16 0 424 0 KEEP + Mbd3l1 YES AA_7 chr9 19941747 19941747 C T exonic Olfr869 synonymous SNV NM_146557:c.C186T:p.A62A exonic Olfr869 synonymous SNV uc009oic.2:c.C186T:p.A62A exonic ENSMUSG00000058491 synonymous SNV ENSMUST00000075717:c.C186T:p.A62A 9qA3 NA NA chr9 19941747 GGCxGTG C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 201 0 8 10.094803 0.071429 0.02 0.959235 78 6 1999 166 60 60 0 0 CC 27.647319 92 0 2355 0 KEEP + Olfr869 NO AA_7 chr9 19975231 19975231 A C exonic Olfr870 nonsynonymous SNV NM_146904:c.T783G:p.S261R exonic Olfr870 nonsynonymous SNV uc009oid.1:c.T783G:p.S261R exonic ENSMUSG00000066899 nonsynonymous SNV ENSMUST00000086476:c.T783G:p.S261R 9qA3 "Score=0.939419;Name=No.105331,chr9:20016669" NA chr9 19975231 AGAxCTA A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 147 0 0 32.827803 0.234375 0.02 1.134074 49 15 1339 408 60 60 0 0 AA 19.848571 66 0 1792 0 KEEP - Olfr870 NO AA_7 chr9 21767812 21767812 C G exonic Epor nonsynonymous SNV NM_010149:c.G64C:p.A22P exonic Epor nonsynonymous SNV uc009ond.1:c.G64C:p.A22P exonic ENSMUSG00000006235 nonsynonymous SNV ENSMUST00000006397:c.G64C:p.A22P 9qA3 NA NA chr9 21767812 CTGxCCC C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 156 3 0 13.214126 0.101449 0.02 1.18846 62 7 1740 197 60 60 0 0 CC 18.626929 62 0 1704 0 KEEP - Epor NO AA_7 chr9 38272221 38272221 A T exonic Olfr904 synonymous SNV NM_146801:c.A594T:p.V198V exonic Olfr904 synonymous SNV uc009owl.1:c.A594T:p.V198V exonic ENSMUSG00000051620 synonymous SNV ENSMUST00000058153:c.A594T:p.V198V 9qA5.1 NA NA chr9 38272221 TGTxGTT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 267 1 0 31.226653 0.125 0.02 2.198439 119 17 3268 453 60 60 0 0 AA 32.759518 109 0 2969 0 KEEP + Olfr904 YES AA_7 chr9 38505729 38505729 G T exonic Olfr919 nonsynonymous SNV NM_146440:c.C233A:p.S78Y exonic Olfr919 nonsynonymous SNV uc009owz.1:c.C233A:p.S78Y exonic ENSMUSG00000056961 nonsynonymous SNV ENSMUST00000071425:c.C233A:p.S78Y 9qA5.1 NA NA chr9 38505729 GTGxAGT G T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 232 0 0 19.981457 0.115789 0.02 0.756102 84 11 2344 295 60 60 0 0 GG 34.548683 115 0 3254 0 KEEP - Olfr919 NO AA_7 chr9 38505730 38505730 A T exonic Olfr919 nonsynonymous SNV NM_146440:c.T232A:p.S78T exonic Olfr919 nonsynonymous SNV uc009owz.1:c.T232A:p.S78T exonic ENSMUSG00000056961 nonsynonymous SNV ENSMUST00000071425:c.T232A:p.S78T 9qA5.1 NA NA chr9 38505730 TGGxGTA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 232 0 0 21.428444 0.117021 0.02 0.862377 83 11 2340 309 60 60 0 0 AA 34.590807 115 0 3209 0 KEEP - Olfr919 YES AA_7 chr9 38784101 38784101 C G exonic Olfr933 nonsynonymous SNV NM_146441:c.C839G:p.T280R exonic Olfr933 nonsynonymous SNV uc009oxk.1:c.C839G:p.T280R exonic ENSMUSG00000058515 nonsynonymous SNV ENSMUST00000075680:c.C839G:p.T280R 9qA5.1 NA NA chr9 38784101 CCAxAGT C G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 133 0 0 11.324666 0.09375 0.02 1.125196 58 6 1657 171 60 60 0 0 CC 16.543413 55 0 1542 0 KEEP + Olfr933 NO AA_7 chr9 38881905 38881905 C T intergenic "Olfr937(dist=13656),Olfr938(dist=3476)" NA NA intergenic "Olfr937(dist=13656),Olfr938(dist=3476)" NA NA intergenic "ENSMUSG00000047724(dist=13656),ENSMUSG00000093152(dist=1091)" NA NA 9qA5.1 "Score=0.958949;Name=No.104428,chr8:47314365" NA chr9 38881905 ACAxGGC C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.69366 0.693668 0.999988 61 0 0 7.697856 0.133333 0.02 -0.262979 26 4 675 109 60 60 0 0 CC 8.116248 27 0 699 0 KEEP NA Olfr937 NO AA_7 chr9 39647379 39647379 A G exonic Olfr971 nonsynonymous SNV NM_146614:c.A359G:p.Y120C exonic Olfr971 nonsynonymous SNV uc009oyq.1:c.A359G:p.Y120C exonic ENSMUSG00000061686 nonsynonymous SNV ENSMUST00000075467:c.A359G:p.Y120C 9qA5.1 NA NA chr9 39647379 CATxTGA A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 219 0 0 9.476463 0.068182 0.02 0.923728 82 6 2191 161 60 60 0 0 AA 31.557279 105 0 2761 0 KEEP + Olfr971 NO AA_7 chr9 46098273 46098273 C T exonic Bud13 synonymous SNV NM_146000:c.C1158T:p.H386H exonic Bud13 synonymous SNV uc009phi.1:c.C1158T:p.H386H exonic ENSMUSG00000032077 synonymous SNV ENSMUST00000074957:c.C1158T:p.H386H 9qA5.2 NA NA chr9 46098273 GCAxCAG C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 114 0 0 7.137657 0.083333 0.02 -0.420888 44 4 1210 112 60 60 0 0 CC 15.936225 53 0 1408 0 KEEP + Bud13 NO AA_7 chr9 48400286 48400286 T C exonic Nnmt nonsynonymous SNV NM_010924:c.A544G:p.N182D exonic Nnmt nonsynonymous SNV uc009pik.1:c.A544G:p.N182D exonic ENSMUSG00000032271 nonsynonymous SNV ENSMUST00000034808:c.A544G:p.N182D 9qA5.3 NA NA chr9 48400286 GGTxCCT T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 225 1 0 51.862984 0.255814 0.02 0.905974 64 22 1818 626 60 60 0 0 TT 33.341095 111 0 3052 0 KEEP - Nnmt NO AA_7 chr9 51040966 51040966 A T exonic Pou2af1 nonsynonymous SNV NM_011136:c.A161T:p.H54L exonic Pou2af1 nonsynonymous SNV uc009plg.1:c.A161T:p.H54L exonic ENSMUSG00000032053 nonsynonymous SNV ENSMUST00000034554:c.A161T:p.H54L 9qA5.3 NA NA chr9 51040966 CCCxCCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 225 0 0 12.437181 0.072165 0.02 0.836103 90 7 2446 200 70 60 0 0 AA 28.648629 98 1 2618 7 KEEP + Pou2af1 YES AA_7 chr9 55401287 55401287 T C exonic Scaper nonsynonymous SNV NM_001081341:c.A4084G:p.S1362G exonic Scaper nonsynonymous SNV uc012gtu.1:c.A2605G:p.S869G exonic ENSMUSG00000034007 nonsynonymous SNV ENSMUST00000114279:c.A76G:p.S26G 9qB NA NA chr9 55401287 GACxTGA T C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 66 0 0 23.854028 0.344828 0.02 -0.254246 19 10 539 272 60 60 0 0 TT 8.121483 27 0 755 0 KEEP - Scaper NO AA_7 chr9 58068332 58068332 A C exonic Pml nonsynonymous SNV NM_008884:c.T1798G:p.F600V exonic Pml nonsynonymous SNV uc009pwq.2:c.T1798G:p.F600V exonic ENSMUSG00000036986 nonsynonymous SNV ENSMUST00000041209:c.T1705G:p.F569V 9qB NA NA chr9 58068332 GGAxCTT A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 139 0 0 44.317393 0.283582 0.02 1.107751 48 19 1306 526 60 60 0 0 AA 16.837343 56 0 1501 0 KEEP - Pml NO AA_7 chr9 66250475 66250475 C T exonic Herc1 nonsynonymous SNV NM_145617:c.C3299T:p.P1100L exonic Herc1 nonsynonymous SNV uc009qev.2:c.C3299T:p.P1100L exonic ENSMUSG00000038664 nonsynonymous SNV ENSMUST00000042824:c.C3299T:p.P1100L 9qC NA NA chr9 66250475 TGCxAGC C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 134 0 0 10.303433 0.089552 0.02 0.912459 61 6 1733 162 60 60 0 0 CC 17.146484 57 0 1623 0 KEEP + Herc1 NO AA_7 chr9 67688294 67688294 A T exonic Vps13c nonsynonymous SNV NM_177184:c.A61T:p.N21Y exonic Vps13c nonsynonymous SNV uc009qmr.1:c.A61T:p.N21Y exonic ENSMUSG00000035284 nonsynonymous SNV ENSMUST00000056871:c.A61T:p.N21Y 9qC NA NA chr9 67688294 GAGxACC A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 94 2 0 6.618448 0.114286 0.02 -0.306888 31 4 877 101 60 60 0 0 AA 11.730474 39 0 1083 0 KEEP + Vps13c YES AA_7 chr9 72738628 72738628 A C exonic Prtg nonsynonymous SNV NM_175485:c.A2068C:p.M690L exonic Prtg nonsynonymous SNV uc009qqh.1:c.A2068C:p.M690L exonic ENSMUSG00000036030 nonsynonymous SNV ENSMUST00000055535:c.A2068C:p.M690L 9qD NA NA chr9 72738628 AACxTGG A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 189 2 0 8.677412 0.078125 0.02 1.134082 59 5 1608 139 60 60 0 0 AA 26.465704 88 0 2388 0 KEEP + Prtg NO AA_7 chr9 75190946 75190946 A G intronic Gnb5 NA NA intronic Gnb5 NA NA UTR5 ENSMUSG00000032192 NA NA 9qD NA NA chr9 75190946 TCTxGGA A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 241 1 0 97.581723 0.368932 0.02 2.675154 65 38 1767 1089 60 60 0 0 AA 32.457918 108 0 2884 0 KEEP + Gnb5 NO AA_7 chr9 78536749 78536749 A T exonic Cd109 synonymous SNV NM_153098:c.A2556T:p.V852V exonic Cd109 synonymous SNV uc009qur.2:c.A2556T:p.V852V exonic ENSMUSG00000046186 synonymous SNV ENSMUST00000093812:c.A2556T:p.V852V 9qE1 NA NA chr9 78536749 TGTxGTA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 91 0 0 24.27771 0.333333 0.02 -0.263089 20 10 575 278 60 60 0 0 AA 15.339116 51 0 1413 0 KEEP + Cd109 YES AA_7 chr9 91278930 91278930 A T exonic Zic4 nonsynonymous SNV NM_009576:c.A767T:p.H256L exonic Zic4 nonsynonymous SNV uc009rak.1:c.A788T:p.H263L exonic ENSMUSG00000036972 nonsynonymous SNV ENSMUST00000066384:c.A788T:p.H263L 9qE3.3 NA NA chr9 91278930 CGCxCGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 68 0 0 8.461188 0.137931 0.02 -0.254029 25 4 652 116 60 60 0 0 AA 9.020924 30 0 793 0 KEEP + Zic4 YES AA_7 chr9 98464167 98464167 A T UTR5 Copb2 NA NA UTR5 Copb2 NA NA UTR5 ENSMUSG00000032458 NA NA 9qE3.3 NA NA chr9 98464167 TCCxCGG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 245 2 0 16.617581 0.097826 0.02 0.889264 83 9 2256 251 60 60 0 0 AA 34.98251 120 1 3116 9 KEEP + Copb2 YES AA_7 chrM 13458 13458 A T intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic "BC071253,Cytb" NA NA exonic ENSMUSG00000064367 unknown UNKNOWN NA NA NA chrM 13458 AACxTAA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1782 5 0 92.407572 0.072306 0.02 17.396041 680 53 18511 1496 60 60 0 0 AA 296.150766 993 1 26804 23 KEEP - NONE YES AA_7 chrUn_random 1130422 1130422 A T intergenic "Gm16367(dist=247850),AU018829(dist=253168)" NA NA intronic "AA792892,C87414" NA NA intronic ENSMUSG00000074012 NA NA NA "Score=0.991056;Name=No.92512,chr5:94040349" NA chrUn_random 1130422 ATCxATA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 280 2 12 13.748844 0.072581 0.02 2.303552 115 9 3200 233 60 60 0 0 AA 36.091137 120 0 3307 0 KEEP + Gm16367 YES AA_7 chrX 100589628 100589628 T A UTR3 Chic1 NA NA UTR3 Chic1 NA NA UTR3 ENSMUSG00000031327 NA NA XqD NA NA chrX 100589628 ATGxGGA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 179 2 0 8.582564 0.068493 0.02 1.153456 68 5 1850 141 60 60 0 0 TT 23.732738 79 0 2071 0 KEEP + Chic1 YES AA_7 chrX 103352858 103352858 T A exonic Tlr13 nonsynonymous SNV NM_205820:c.T861A:p.N287K exonic Tlr13 nonsynonymous SNV uc009ubn.1:c.T861A:p.N287K exonic ENSMUSG00000033777 nonsynonymous SNV ENSMUST00000040065:c.T861A:p.N287K XqD NA NA chrX 103352858 GAAxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999997 75 0 0 8.074487 0.125 0.02 -0.350588 35 5 961 122 60 60 0 0 TT 9.623435 32 0 862 0 KEEP + Tlr13 YES AA_7 chrX 119027292 119027292 A T intergenic "Pcdh11x(dist=1003065),Nap1l3(dist=480878)" NA NA intergenic "Pcdh11x(dist=1007233),Nap1l3(dist=480878)" NA NA ncRNA_exonic ENSMUSG00000084110 NA NA XqE3 "Score=0.974369;Name=No.103435,chr7:111411899" NA chrX 119027292 AAGxATG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 167 2 3 16.391323 0.136364 0.02 1.018605 57 9 1608 235 60 57 0 0 AA 23.760344 79 0 2194 0 KEEP NA Pcdh11x YES AA_7 chrX 13063943 13063943 T A exonic Nyx nonsynonymous SNV NM_173415:c.T909A:p.H303Q exonic Nyx nonsynonymous SNV uc009srn.1:c.T909A:p.H303Q exonic ENSMUSG00000051228 nonsynonymous SNV ENSMUST00000050434:c.T909A:p.H303Q XqA1.1 NA NA chrX 13063943 GCAxCTC T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 384 1 0 22.000177 0.094488 0.02 2.474409 115 12 3172 335 60 60 0 0 TT 58.869212 196 0 5295 0 KEEP + Nyx YES AA_7 chrX 133368751 133368751 T A exonic Plp1 nonsynonymous SNV NM_011123:c.T680A:p.I227N exonic Plp1 nonsynonymous SNV uc009ujc.1:c.T680A:p.I227N exonic ENSMUSG00000031425 nonsynonymous SNV ENSMUST00000033800:c.T680A:p.I227N XqF1 NA NA chrX 133368751 CCAxCTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 185 0 0 13.9336 0.091954 0.02 0.834486 79 8 2198 217 60 60 0 0 TT 22.556222 75 0 2058 0 KEEP + Plp1 YES AA_7 chrX 136542299 136542299 A T UTR3 Nup62cl NA NA UTR3 Nup62cl NA NA UTR3 ENSMUSG00000072944 NA NA XqF1 NA NA chrX 136542299 AGCxATT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 118 0 0 9.575706 0.111111 0.02 -0.394604 40 5 1115 140 60 60 0 0 AA 16.841804 56 0 1523 0 KEEP - Nup62cl YES AA_7 chrX 137472283 137472283 A T exonic Vsig1 synonymous SNV NM_026103:c.A591T:p.P197P exonic Vsig1 synonymous SNV uc009uli.2:c.A591T:p.P197P exonic ENSMUSG00000031430 synonymous SNV ENSMUST00000033806:c.A912T:p.P304P XqF1 NA NA chrX 137472283 GCCxTCT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 152 0 0 6.997454 0.090909 0.02 -0.385812 40 4 1102 109 60 60 0 0 AA 24.62603 82 0 2169 0 KEEP + Vsig1 YES AA_7 chrX 146992508 146992508 G A exonic Alas2 nonsynonymous SNV NM_001102446:c.G620A:p.G207E exonic Alas2 nonsynonymous SNV uc009uoj.1:c.G665A:p.G222E exonic ENSMUSG00000025270 nonsynonymous SNV ENSMUST00000066337:c.G665A:p.G222E XqF3 NA NA chrX 146992508 CTGxAGC G A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800133 0.800245 0.99986 63 0 0 10.55594 0.142857 0.02 -0.306902 30 5 843 144 60 60 0 0 GG 5.714352 19 0 525 0 KEEP + Alas2 NO AA_7 chrX 147089270 147089270 A G exonic Tro synonymous SNV NM_001002272:c.T933C:p.I311I exonic Tro synonymous SNV uc009uop.1:c.T756C:p.I252I exonic ENSMUSG00000025272 synonymous SNV ENSMUST00000026307:c.T933C:p.I311I XqF3 NA NA chrX 147089270 CCCxATC A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 837 0 0 110.09024 0.174556 0.02 7.405813 279 59 7790 1498 60 60 0 1 AA 122.697132 408 0 11176 0 KEEP - Tro NO AA_7 chrX 152009530 152009530 A T exonic Ptchd1 stopgain SNV NM_001093750:c.T1221A:p.C407X exonic Ptchd1 stopgain SNV uc009urw.1:c.T1221A:p.C407X exonic ENSMUSG00000041552 stopgain SNV ENSMUST00000038665:c.T1221A:p.C407X XqF3 NA NA chrX 152009530 AATxCAG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800133 0.800245 0.999859 58 2 0 10.156679 0.142857 0.02 -0.306885 30 5 811 140 60 60 0 0 AA 5.412163 18 0 476 0 KEEP - Ptchd1 YES AA_7 chrX 156351872 156351872 A T intronic Sh3kbp1 NA NA intronic Sh3kbp1 NA NA intronic ENSMUSG00000040990 NA NA XqF4 NA NA chrX 156351872 TACxGCT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 123 0 0 9.797192 0.151515 0.02 -0.306855 28 5 772 135 60 60 0 0 AA 20.729796 69 0 1850 0 KEEP + Sh3kbp1 YES AA_7 chrX 156921155 156921155 T A intronic Gpr64 NA NA intronic Gpr64 NA NA intronic ENSMUSG00000031298 NA NA XqF4 NA NA chrX 156921155 TCTxGTG T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 109 0 0 11.548233 0.117647 0.02 1.346313 45 6 1255 167 60 60 0 0 TT 13.534385 45 0 1237 0 KEEP + Gpr64 YES AA_7 chrX 157024832 157024832 A C exonic Phka2 nonsynonymous SNV NM_001177878:c.A3233C:p.N1078T exonic Phka2 nonsynonymous SNV uc009utn.2:c.A3233C:p.N1078T exonic ENSMUSG00000031295 nonsynonymous SNV ENSMUST00000033652:c.A3233C:p.N1078T XqF4 NA NA chrX 157024832 TTAxCAG A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 79 0 0 37.269837 0.384615 0.02 -0.341973 24 15 662 414 60 60 0 0 AA 9.018834 30 0 803 0 KEEP + Phka2 NO AA_7 chrX 157681345 157681345 A T exonic Scml2 nonsynonymous SNV NM_133194:c.A2452T:p.S818C exonic Scml2 nonsynonymous SNV uc009utz.1:c.A313T:p.S105C exonic ENSMUSG00000000037 nonsynonymous SNV ENSMUST00000087090:c.A2230T:p.S744C XqF4 NA NA chrX 157681345 AATxGTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 70 0 0 13.664605 0.230769 0.02 -0.228011 20 6 572 169 60 60 0 0 AA 11.129333 37 0 1034 0 KEEP + Scml2 YES AA_7 chrX 159211449 159211449 A T exonic Rbbp7 nonsynonymous SNV NM_009031:c.A962T:p.Q321L exonic Rbbp7 nonsynonymous SNV uc009uuf.2:c.A962T:p.Q321L exonic ENSMUSG00000031353 nonsynonymous SNV ENSMUST00000033720:c.A962T:p.Q321L XqF4 NA NA chrX 159211449 TCCxGGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 121 0 0 9.159922 0.092593 0.02 1.221707 49 5 1392 140 60 60 0 0 AA 15.941186 53 0 1473 0 KEEP + Rbbp7 YES AA_7 chrX 20441918 20441918 T A exonic Syn1 nonsynonymous SNV NM_001110780:c.A1127T:p.H376L exonic Syn1 nonsynonymous SNV uc009stw.2:c.A1127T:p.H376L exonic ENSMUSG00000037217 nonsynonymous SNV ENSMUST00000041344:c.A1127T:p.H376L XqA1.3 NA NA chrX 20441918 CCAxGCA T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 205 2 0 24.14795 0.12766 0.02 0.87105 82 12 2225 340 60 60 0 0 TT 27.348805 91 0 2423 0 KEEP - Syn1 YES AA_7 chrX 45289453 45289453 A C intronic Ocrl NA NA intronic Ocrl NA NA intronic ENSMUSG00000001173 NA NA XqA4 NA NA chrX 45289453 CTAxGTA A C Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 67 0 0 9.381458 0.238095 0.02 -0.192889 16 5 456 120 60 60 0 0 AA 11.704913 39 0 1072 0 KEEP + Ocrl NO AA_7 chrX 58963868 58963868 A T UTR3 Ldoc1 NA NA UTR3 Ldoc1 NA NA UTR3 ENSMUSG00000057615 NA NA XqA6 NA NA chrX 58963868 ACCxGGT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 149 2 0 10.923266 0.077922 0.02 1.092029 71 6 1993 172 60 60 0 0 AA 17.74319 59 0 1620 0 KEEP + Ldoc1 YES AA_7 chrX 6200799 6200799 C T exonic Shroom4 synonymous SNV NM_001040459:c.C2952T:p.A984A exonic Shroom4 synonymous SNV uc009skz.1:c.C2604T:p.A868A exonic ENSMUSG00000068270 synonymous SNV ENSMUST00000089520:c.C2604T:p.A868A XqA1.1 NA NA chrX 6200799 GGCxGGC C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 224 1 0 48.257281 0.223404 0.02 0.970335 73 21 1859 599 60 60 0 0 CC 27.641402 92 0 2400 0 KEEP + Shroom4 NO AA_7 chrX 70962792 70962792 C T exonic Abcd1 synonymous SNV NM_007435:c.C423T:p.A141A exonic Abcd1 synonymous SNV uc009tmk.1:c.C423T:p.A141A exonic ENSMUSG00000031378 synonymous SNV ENSMUST00000002084:c.C423T:p.A141A XqA7.3 NA NA chrX 70962792 CGCxCTT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 330 2 0 29.734263 0.128 0.02 2.286962 109 16 2954 428 60 60 0 0 CC 55.035104 183 0 5004 0 KEEP + Abcd1 NO AA_7 chrX 71439107 71439107 C T intronic Tktl1 NA NA intronic Tktl1 NA NA intronic ENSMUSG00000031397 NA NA XqA7.3 NA NA chrX 71439107 TAAxCTT C T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851947 0.851984 0.999957 70 0 0 7.960303 0.105263 0.02 -0.333218 34 4 943 116 60 60 0 0 CC 7.820357 26 0 723 0 KEEP + Tktl1 NO AA_7 chrX 71529060 71529060 A G intronic Taz NA NA intronic Taz NA NA intronic ENSMUSG00000009995 NA NA XqA7.3 NA NA chrX 71529060 GTGxCCC A G Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 117 0 0 37.664844 0.333333 0.02 -0.420708 32 16 858 433 60 60 0 0 AA 15.299336 51 0 1337 0 KEEP + Taz NO AA_7 chrX 71582805 71582805 A T exonic Plxna3 synonymous SNV NM_008883:c.A3171T:p.V1057V exonic Plxna3 synonymous SNV uc009too.1:c.A3171T:p.V1057V exonic ENSMUSG00000031398 synonymous SNV ENSMUST00000004326:c.A3171T:p.V1057V XqA7.3 NA NA chrX 71582805 TGTxCGA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 311 0 0 23.138786 0.104348 0.02 2.382752 103 12 2741 341 60 60 0 0 AA 45.964056 153 0 3998 0 KEEP + Plxna3 YES AA_7 chrX 71583991 71583991 A T intronic Plxna3 NA NA intronic Plxna3 NA NA intronic ENSMUSG00000031398 NA NA XqA7.3 NA NA chrX 71583991 GCCxCCA A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 371 0 0 13.43392 0.060606 0.02 2.233051 124 8 3394 227 60 60 0 0 AA 53.483405 181 1 4839 8 KEEP + Plxna3 YES AA_7 chrX 71584899 71584899 T A exonic Plxna3 nonsynonymous SNV NM_008883:c.T4532A:p.L1511Q exonic Plxna3 nonsynonymous SNV uc009top.1:c.T665A:p.L222Q exonic ENSMUSG00000031398 nonsynonymous SNV ENSMUST00000167852:c.T743A:p.L248Q XqA7.3 NA NA chrX 71584899 AGCxGTT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 119 0 0 16.827803 0.210526 0.02 -0.33321 30 8 853 215 60 60 0 0 TT 18.948363 63 0 1742 0 KEEP + Plxna3 YES AA_7 chrX 72204996 72204996 A T intergenic "Gm5936(dist=116288),LOC100503280(dist=7187)" NA NA intergenic "Gm5057(dist=79594),Gab3(dist=7186)" NA NA downstream ENSMUSG00000083981 NA NA XqA7.3 "Score=0.969769;Name=No.113432,chrX:71954628" NA chrX 72204996 ACCxGAT A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 352 0 123 17.0229 0.095745 0.02 0.969187 85 9 2417 256 46 40 0 0 AA 46.908428 156 0 4344 0 KEEP NA Gm5936 YES AA_7 chrX 7708537 7708537 T A exonic Wdr13 nonsynonymous SNV NM_026137:c.A256T:p.S86C exonic Wdr13 nonsynonymous SNV uc009snv.2:c.A256T:p.S86C exonic ENSMUSG00000031166 nonsynonymous SNV ENSMUST00000033506:c.A256T:p.S86C XqA1.1 NA NA chrX 7708537 GGCxGCT T A Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 126 0 0 12.911422 0.104478 0.02 1.108027 60 7 1671 193 60 60 0 0 TT 13.524795 45 0 1225 0 KEEP - Wdr13 YES AA_7 chrX 98472196 98472196 A T exonic Med12 nonsynonymous SNV NM_021521:c.A1042T:p.S348C exonic Med12 nonsynonymous SNV uc009txf.1:c.A757T:p.S253C exonic ENSMUSG00000079487 nonsynonymous SNV ENSMUST00000087948:c.A1042T:p.S348C XqD NA NA chrX 98472196 TTTxGTG A T Ot9364_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index26_ATGAGC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 189 0 0 10.806086 0.083333 0.02 1.063951 66 6 1849 169 60 60 0 0 AA 27.069185 90 0 2489 0 KEEP + Med12 YES AFB1_1 chr10 109151467 109151467 C G intronic Nav3 NA NA intronic Nav3 NA NA intronic ENSMUSG00000020181 NA NA 10qD1 NA NA chr10 109151467 CTAxCGT C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.999315 0.999317 0.999997 115 1 0 19.435139 0.123457 0.02 0.886998 71 10 2040 278 60 60 0 0 CC 9.021676 30 0 828 0 KEEP - Nav3 NO AFB1_1 chr10 126723183 126723183 T G exonic Mbd6 synonymous SNV NM_033072:c.A831C:p.P277P exonic Mbd6 synonymous SNV uc007hiw.1:c.A831C:p.P277P exonic ENSMUSG00000025409 synonymous SNV ENSMUST00000026476:c.A831C:p.P277P 10qD3 NA NA chr10 126723183 GCTxGGG T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.902315 0.909069 0.99257 65 1 0 10.236458 0.285714 0.02 -0.374434 20 8 482 137 60 60 0 0 TT 2.405665 8 0 213 0 KEEP - Mbd6 NO AFB1_1 chr10 22092053 22092053 T C exonic "Raet1a,Raet1b,Raet1d" synonymous SNV NM_009017:c.T675C:p.P225P exonic "Raet1a,Raet1d" synonymous SNV uc007epm.1:c.T663C:p.P221P exonic ENSMUSG00000078452 synonymous SNV ENSMUST00000130977:c.T663C:p.P221P 10qA3 "Score=0.983517;Name=No.5738,chr10:21884787" NA chr10 22092053 ACCxACC T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 332 6 35 12.200571 0.4375 0.02 -0.188717 9 7 200 137 29 29 0 0 TT 73.828338 252 2 6512 14 KEEP NA Raet1a NO AFB1_1 chr10 61744517 61744517 G C intronic Hk1 NA NA intronic Hk1 NA NA intronic ENSMUSG00000037012 NA NA 10qB4 NA NA chr10 61744517 CCCxCCC G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 83 1 0 8.283171 0.264706 0.02 -0.372037 25 9 501 125 60 60 0 0 GG 9.814796 33 0 715 0 KEEP - Hk1 NO AFB1_1 chr10 67003219 67003219 C G exonic Egr2 nonsynonymous SNV NM_010118:c.C896G:p.S299C exonic Egr2 nonsynonymous SNV uc007flx.1:c.C896G:p.S299C exonic ENSMUSG00000037868 nonsynonymous SNV ENSMUST00000048289:c.C896G:p.S299C 10qB5.1 NA NA chr10 67003219 GGTxTGC C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 85 2 0 12.11405 0.294118 0.02 -0.149053 12 5 335 142 60 60 0 0 CC 18.650879 62 0 1770 0 KEEP + Egr2 NO AFB1_1 chr10 80268074 80268074 C A exonic Amh nonsynonymous SNV NM_007445:c.C82A:p.L28M exonic Amh nonsynonymous SNV uc007get.1:c.C82A:p.L28M exonic ENSMUSG00000035262 nonsynonymous SNV ENSMUST00000036016:c.C82A:p.L28M 10qC1 NA NA chr10 80268074 AACxTGG C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 92 0 0 31.016239 0.48 0.02 -0.227733 13 12 344 328 60 60 0 0 CC 14.725468 49 0 1358 0 KEEP + Amh YES AFB1_1 chr10 80297614 80297614 C T exonic Lingo3 nonsynonymous SNV NM_001013758:c.G1226A:p.R409Q exonic Lingo3 nonsynonymous SNV uc007gey.2:c.G1226A:p.R409Q exonic ENSMUSG00000051067 nonsynonymous SNV ENSMUST00000053986:c.G1226A:p.R409Q 10qC1 NA NA chr10 80297614 TCCxGGA C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 74 0 0 7.7336 0.375 0.02 -0.078885 5 3 126 86 60 60 0 0 CC 14.487672 52 1 1385 10 KEEP - Lingo3 NO AFB1_1 chr10 80866159 80866159 C A exonic Nfic synonymous SNV NM_008688:c.G1284T:p.P428P exonic Nfic nonsynonymous SNV uc011xji.1:c.G955T:p.D319Y exonic ENSMUSG00000055053 synonymous SNV ENSMUST00000105319:c.G903T:p.P301P 10qC1 NA NA chr10 80866159 TGTxGGG C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 163 4 0 45.236915 0.196078 0.02 2.69338 82 20 1951 576 60 60 0 0 CC 13.522335 45 0 1232 0 KEEP - Nfic YES AFB1_1 chr10 94875257 94875257 T A UTR3 Socs2 NA NA UTR3 Socs2 NA NA UTR3 ENSMUSG00000020027 NA NA 10qC2 "Score=0.924552;Name=No.7658,chr15:74815820" NA chr10 94875257 TTTxAAA T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.993634 1 0.993634 203 0 6 22.928638 0.088398 0.02 3.171546 165 16 4494 386 60 60 0 1 TT 3.608806 12 0 326 0 KEEP - Socs2 NO AFB1_1 chr10 99478623 99478623 G T UTR5 Kitl NA NA UTR5 "Kitl,Kitlg" NA NA UTR5 ENSMUSG00000019966 NA NA 10qD1 NA NA chr10 99478623 GCTxCCT G T AFB1_1_ATCACG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.994378 0.999987 0.994391 122 1 0 147.866974 0.514286 0.02 2.568019 51 54 1437 1537 60 60 0 0 GG 3.910835 13 0 377 0 KEEP + Kitl YES AFB1_1 chr11 101330303 101330303 C G exonic Rnd2 synonymous SNV NM_009708:c.C159G:p.R53R exonic Rnd2 synonymous SNV uc007lpb.1:c.C159G:p.R53R exonic ENSMUSG00000001313 synonymous SNV ENSMUST00000001347:c.C159G:p.R53R 11qD NA NA chr11 101330303 GCGxCGC C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.99986 39 1 0 12.038839 0.333333 0.02 -0.131541 10 5 286 138 60 29 0 0 CC 5.713297 19 0 519 0 KEEP + Rnd2 NO AFB1_1 chr11 101330304 101330304 C T exonic Rnd2 nonsynonymous SNV NM_009708:c.C160T:p.R54C exonic Rnd2 nonsynonymous SNV uc007lpb.1:c.C160T:p.R54C exonic ENSMUSG00000001313 nonsynonymous SNV ENSMUST00000001347:c.C160T:p.R54C 11qD NA NA chr11 101330304 CGCxGCA C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 37 1 0 12.124089 0.357143 0.02 -0.122703 9 5 221 137 60 29 0 0 CC 5.646365 19 0 449 0 KEEP + Rnd2 NO AFB1_1 chr11 101879768 101879768 G A intronic Mpp3 NA NA UTR3 Mpp3 NA NA UTR3 ENSMUSG00000052373 NA NA 11qD NA NA chr11 101879768 AGAxAGA G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139815 0.139832 0.999879 34 1 0 8.024279 0.5 0.02 -0.10524 3 3 89 84 60 60 0 0 GG 6.6184 22 0 633 0 KEEP - Mpp3 NO AFB1_1 chr11 29460686 29460686 G T intronic 1700034F02Rik NA NA intronic 1700034F02Rik NA NA intronic ENSMUSG00000020461 NA NA 11qA3.3 NA NA chr11 29460686 CTCxCTC G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 0.999999 75 0 0 10.357022 0.142857 0.02 -0.306819 30 5 788 142 60 60 0 0 GG 10.817147 36 0 904 0 KEEP + 1700034F02Rik YES AFB1_1 chr11 3060093 3060093 G A exonic Sfi1 stopgain SNV NM_030207:c.C907T:p.Q303X exonic Sfi1 stopgain SNV uc007hrt.1:c.C907T:p.Q303X exonic ENSMUSG00000023764 stopgain SNV ENSMUST00000140846:c.C664T:p.Q222X 11qA1 NA NA chr11 3060093 ACTxCCA G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1187 6 0 17.732675 0.032258 0.02 8.390461 420 14 11810 378 60 60 0 0 GG 199.072831 662 0 18221 0 KEEP - Sfi1 NO AFB1_1 chr11 35477611 35477611 A T exonic Slit3 nonsynonymous SNV NM_011412:c.A2767T:p.S923C exonic Slit3 nonsynonymous SNV uc007ild.2:c.A2767T:p.S923C exonic ENSMUSG00000056427 nonsynonymous SNV ENSMUST00000069837:c.A2767T:p.S923C 11qA4 NA NA chr11 35477611 TCTxGCC A T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 112 2 0 7.85484 0.428571 0.02 -0.070101 4 3 114 85 60 60 0 0 AA 27.058251 90 0 2417 0 KEEP + Slit3 NO AFB1_1 chr11 5009578 5009578 C G intronic Emid1 NA NA exonic Emid1 synonymous SNV uc007hwf.1:c.G333C:p.R111R exonic ENSMUSG00000034164 synonymous SNV ENSMUST00000036246:c.G813C:p.R271R 11qA1 NA NA chr11 5009578 GACxCGT C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 53 0 0 7.053439 0.428571 0.02 -0.061373 4 3 116 77 60 60 0 0 CC 11.12955 37 0 1038 0 KEEP - Emid1 NO AFB1_1 chr11 66896397 66896397 G T exonic Myh3 nonsynonymous SNV NM_001099635:c.G393T:p.W131C exonic Myh3 nonsynonymous SNV uc007jlx.1:c.G393T:p.W131C exonic ENSMUSG00000020908 nonsynonymous SNV ENSMUST00000007301:c.G393T:p.W131C 11qB3 NA NA chr11 66896397 ATGxCTG G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 123 0 0 90.567517 0.64 0.02 -0.438464 18 32 511 895 60 60 0 0 GG 18.0418 60 0 1654 0 KEEP + Myh3 YES AFB1_1 chr11 70969552 70969552 G A exonic Nlrp1b synonymous SNV NM_001162414:c.C3484T:p.L1162L exonic Nlrp1b synonymous SNV uc007jxs.1:c.C3484T:p.L1162L exonic ENSMUSG00000070390 synonymous SNV ENSMUST00000094046:c.C3475T:p.L1159L 11qB4 NA NA chr11 70969552 CCAxGTG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.353909 0.353947 0.999892 49 0 1 6.434255 0.157895 0.02 -0.166634 16 3 466 86 60 29 0 0 GG 6.918929 23 0 656 0 KEEP - Nlrp1b NO AFB1_1 chr11 82801017 82801017 C T exonic Slfn9 nonsynonymous SNV NM_172796:c.G787A:p.D263N exonic Slfn9 nonsynonymous SNV uc007kob.1:c.G787A:p.D263N exonic ENSMUSG00000069793 nonsynonymous SNV ENSMUST00000038211:c.G787A:p.D263N 11qC "Score=0.925279;Name=No.13019,chr11:82826104" NA chr11 82801017 AGTxAGG C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 151 1 10 7.493683 0.090909 0.02 -0.394659 40 4 1166 114 60 29 0 0 CC 21.993531 83 1 2385 28 KEEP - Slfn9 NO AFB1_1 chr11 82842594 82842594 G T ncRNA_exonic Slfn10-ps NA NA exonic Slfn10-ps nonsynonymous SNV uc011ybb.1:c.C921A:p.D307E exonic ENSMUSG00000072621 nonsynonymous SNV ENSMUST00000092839:c.C2268A:p.D756E 11qC "Score=0.925279;Name=No.13019,chr11:82797320" NA chr11 82842594 CCTxTCT G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 105 1 0 10.033068 0.119048 0.02 -0.377081 37 5 1039 143 60 60 0 0 GG 13.860565 56 1 1542 28 KEEP - Slfn10-ps YES AFB1_1 chr12 101299482 101299482 G A exonic Kcnk13 nonsynonymous SNV NM_001164426:c.G605A:p.C202Y exonic Kcnk13 nonsynonymous SNV uc007osi.2:c.G605A:p.C202Y exonic ENSMUSG00000045404 nonsynonymous SNV ENSMUST00000049788:c.G605A:p.C202Y 12qE NA NA chr12 101299482 TATxCTT G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 134 0 0 15.409384 0.428571 0.02 -0.122772 8 6 228 167 60 60 0 0 GG 32.148158 107 0 2966 0 KEEP + Kcnk13 NO AFB1_1 chr12 119169723 119169723 G T exonic Dnah11 nonsynonymous SNV NM_010060:c.C10861A:p.L3621I exonic Dnahc11 nonsynonymous SNV uc007pie.1:c.C10861A:p.L3621I exonic ENSMUSG00000018581 nonsynonymous SNV ENSMUST00000084806:c.C10861A:p.L3621I 12qF2 NA NA chr12 119169723 CAAxCTG G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.13983 0.139832 0.999988 42 2 0 13.045223 0.416667 0.02 -0.105238 7 5 202 142 60 60 0 0 GG 8.120912 27 0 747 0 KEEP - Dnah11 YES AFB1_1 chr12 62941441 62941441 G A exonic Lrfn5 nonsynonymous SNV NM_178714:c.G1027A:p.D343N exonic Lrfn5 nonsynonymous SNV uc007nqm.1:c.G1027A:p.D343N exonic ENSMUSG00000035653 nonsynonymous SNV ENSMUST00000055815:c.G1027A:p.D343N 12qC1 NA NA chr12 62941441 CTTxACA G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 88 0 0 28.930886 0.478261 0.02 -0.201703 12 11 351 306 60 60 0 0 GG 14.573098 57 1 1648 24 KEEP + Lrfn5 NO AFB1_1 chr12 65574153 65574153 A T exonic Fscb nonsynonymous SNV NM_001163271:c.T1525A:p.S509T exonic Fscb nonsynonymous SNV uc011yme.1:c.T1525A:p.S509T exonic ENSMUSG00000043060 nonsynonymous SNV ENSMUST00000059833:c.T1525A:p.S509T 12qC1 NA NA chr12 65574153 CAGxTAG A T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 136 0 1 9.167055 0.136364 0.02 -0.393587 38 6 1049 138 60 57 0 0 AA 22.802049 76 0 1992 0 KEEP - Fscb NO AFB1_1 chr12 77676890 77676890 C G exonic Plekhg3 nonsynonymous SNV NM_153804:c.C1919G:p.A640G exonic Plekhg3 nonsynonymous SNV uc011yod.1:c.C80G:p.A27G exonic ENSMUSG00000052609 nonsynonymous SNV ENSMUST00000101279:c.C1916G:p.A639G 12qC3 NA NA chr12 77676890 CGGxCTT C G AFB1_1_ATCACG 7-E185-R-P_1 0 DBSNP COVERED 0.423417 0.423478 0.999855 68 0 0 8.863778 0.2 0.02 -0.17539 16 4 453 113 60 60 0 0 CC 10.828074 36 0 997 0 KEEP + Plekhg3 NO AFB1_1 chr12 86353981 86353981 C G exonic Ylpm1 nonsynonymous SNV NM_178363:c.C1010G:p.A337G exonic Ylpm1 nonsynonymous SNV uc007ogd.1:c.C1010G:p.A337G exonic ENSMUSG00000021244 nonsynonymous SNV ENSMUST00000021670:c.C1010G:p.A337G 12qD2 NA NA chr12 86353981 CTGxCAG C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999997 81 1 0 14.947934 0.162791 0.02 -0.37709 36 7 1020 199 60 60 0 0 CC 9.324025 31 0 856 0 KEEP + Ylpm1 NO AFB1_1 chr12 8883046 8883046 C G intergenic "Sdc1(dist=82553),Laptm4a(dist=45067)" NA NA UTR3 AK084679 NA NA ncRNA_exonic ENSMUSG00000042976 NA NA 12qA1.1 NA NA chr12 8883046 TGGxCGT C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 82 2 0 6.97327 0.214286 0.02 -0.122775 11 3 311 87 60 60 0 0 CC 18.044373 60 0 1657 0 KEEP NA Sdc1 NO AFB1_1 chr13 11739907 11739907 A C intronic Ryr2 NA NA intronic Ryr2 NA NA intronic ENSMUSG00000021313 NA NA 13qA1 NA NA chr13 11739907 ATAxATT A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.99985 0.999987 0.999863 129 1 0 11.789999 0.066667 0.02 2.362985 98 7 2796 196 60 60 0 0 AA 6.015865 20 0 559 0 KEEP - Ryr2 NO AFB1_1 chr13 12503565 12503565 G C exonic Heatr1 nonsynonymous SNV NM_144835:c.G2006C:p.G669A exonic Heatr1 nonsynonymous SNV uc007plk.1:c.G2006C:p.G669A exonic ENSMUSG00000050244 nonsynonymous SNV ENSMUST00000059270:c.G2006C:p.G669A 13qA1 NA NA chr13 12503565 TGGxCAG G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 185 2 0 12.826875 0.084337 0.02 0.967352 76 7 2153 199 60 60 0 0 GG 23.72834 79 0 2191 0 KEEP + Heatr1 NO AFB1_1 chr13 23831613 23831613 G C UTR3 Hist1h1c NA NA UTR3 Hist1h1c NA NA UTR3 ENSMUSG00000036181 NA NA 13qA3.1 NA NA chr13 23831613 ATTxGAC G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.756043 0.760887 0.993634 45 0 0 13.837895 0.212121 0.02 -0.289356 26 7 742 179 60 60 0 0 GG 3.609972 12 0 344 0 KEEP + Hist1h1c NO AFB1_1 chr13 27156280 27156280 C G exonic Prl nonsynonymous SNV NM_001163530:c.C457G:p.Q153E exonic Prl nonsynonymous SNV uc007pxb.2:c.C460G:p.Q154E exonic ENSMUSG00000021342 nonsynonymous SNV ENSMUST00000018061:c.C451G:p.Q151E 13qA3.1 NA NA chr13 27156280 AAGxAGC C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 76 0 0 10.789517 0.138889 0.02 -0.31571 31 5 880 147 60 60 0 0 CC 9.325793 31 0 892 0 KEEP + Prl NO AFB1_1 chr13 48701718 48701718 G A exonic Ptpdc1 synonymous SNV NM_207232:c.C6T:p.A2A exonic Ptpdc1 synonymous SNV uc007qii.1:c.C6T:p.A2A exonic ENSMUSG00000038042 synonymous SNV ENSMUST00000035824:c.C6T:p.A2A 13qA5 NA NA chr13 48701718 TGCxGCC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 150 2 0 6.362538 0.15 0.02 -0.175328 17 3 450 86 60 25 0 0 GG 33.072335 110 0 2946 0 KEEP - Ptpdc1 NO AFB1_1 chr13 54665536 54665536 T C intronic 4833439L19Rik NA NA intronic 4833439L19Rik NA NA intronic ENSMUSG00000025871 NA NA 13qB1 NA NA chr13 54665536 AACxTAA T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 325 4 0 8.822188 0.083333 0.02 1.267336 55 5 1586 139 60 60 0 0 TT 60.084766 204 1 5708 11 KEEP - 4833439L19Rik NO AFB1_1 chr14 106292710 106292710 C T exonic Spry2 synonymous SNV NM_011897:c.G258A:p.P86P exonic Spry2 synonymous SNV uc007uxy.2:c.G258A:p.P86P exonic ENSMUSG00000022114 synonymous SNV ENSMUST00000022709:c.G258A:p.P86P 14qE2.3 NA NA chr14 106292710 CTCxGGC C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 79 0 0 18.039332 0.411765 0.02 -0.149011 10 7 244 197 60 60 0 0 CC 15.027045 50 0 1289 0 KEEP - Spry2 NO AFB1_1 chr14 32357819 32357819 C G intronic Colq NA NA intronic Colq NA NA intronic ENSMUSG00000057606 NA NA 14qB NA NA chr14 32357819 GATxGGG C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.999859 33 0 0 27.463998 0.75 0.02 -0.10522 3 9 75 261 60 60 0 0 CC 5.103989 17 0 445 0 KEEP - Colq NO AFB1_1 chr14 48150297 48150297 C A exonic Fbxo34 nonsynonymous SNV NM_030236:c.C1591A:p.Q531K exonic Fbxo34 nonsynonymous SNV uc007tig.2:c.C1591A:p.Q531K exonic ENSMUSG00000037536 nonsynonymous SNV ENSMUST00000043112:c.C1591A:p.Q531K 14qC1 "Score=0.96921;Name=No.56072,chr7:49303225" NA chr14 48150297 CCCxAGC C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09903 0.099721 0.993072 22 0 0 7.178524 0.3 0.02 -0.087697 7 3 202 84 60 23 0 0 CC 3.309229 11 0 318 0 KEEP + Fbxo34 YES AFB1_1 chr14 54081003 54081003 C G intergenic "Olfr1507(dist=965633),A430107P09Rik(dist=204612)" NA NA ncRNA_intronic "TCRA,TCR[alpha]" NA NA intronic ENSMUSG00000076830 NA NA 14qC2 "Score=0.969859;Name=No.53366,chr14:53293662" NA chr14 54081003 GTAxAAA C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 288 6 77 9.768737 0.222222 0.02 -0.184172 14 4 399 120 22 25 0 0 CC 65.271822 217 0 6098 0 KEEP NA Olfr1507 NO AFB1_1 chr14 54450837 54450837 A C intergenic "A430107P09Rik(dist=162827),Dad1(dist=404323)" NA NA intronic Gm16452 NA NA intronic ENSMUSG00000076861 NA NA 14qC2 NA NA chr14 54450837 AGAxAAT A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 95 1 0 19.812533 0.169811 0.02 1.328723 44 9 1264 260 60 60 0 0 AA 11.102923 37 0 1009 0 KEEP NA A430107P09Rik NO AFB1_1 chr14 66196788 66196788 A C exonic Elp3 synonymous SNV NM_001253812:c.T648G:p.T216T exonic Elp3 synonymous SNV uc007ujk.1:c.T591G:p.T197T exonic ENSMUSG00000022031 synonymous SNV ENSMUST00000022609:c.T648G:p.T216T 14qD1 NA NA chr14 66196788 TGAxGTA A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.641278 0.641347 0.999892 55 0 0 6.430497 0.142857 0.02 -0.245514 24 4 690 95 60 60 0 0 AA 6.917626 23 0 634 0 KEEP - Elp3 NO AFB1_1 chr14 73768251 73768251 A C intronic Itm2b NA NA UTR5 Itm2b NA NA intronic ENSMUSG00000022108 NA NA 14qD3 NA NA chr14 73768251 ACAxCAG A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 79 0 0 7.199472 0.4 0.02 -0.181248 12 8 303 94 60 60 0 0 AA 11.701886 39 0 1025 0 KEEP - Itm2b NO AFB1_1 chr14 8725495 8725495 G C exonic Flnb nonsynonymous SNV NM_134080:c.G2050C:p.A684P exonic Flnb nonsynonymous SNV uc007sek.1:c.G2050C:p.A684P exonic ENSMUSG00000025278 nonsynonymous SNV ENSMUST00000052678:c.G2050C:p.A684P 14qA1 NA NA chr14 8725495 CTGxCGC G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.995335 0.999992 0.995343 123 0 0 36.109713 0.157407 0.02 2.542244 91 17 2521 484 60 60 0 0 GG 4.210624 14 0 383 0 KEEP + Flnb NO AFB1_1 chr15 102865362 102865362 C G exonic Hoxc4 nonsynonymous SNV NM_013553:c.C209G:p.T70S exonic Hoxc4 nonsynonymous SNV uc007xxg.1:c.C209G:p.T70S exonic ENSMUSG00000075394 nonsynonymous SNV ENSMUST00000100164:c.C209G:p.T70S 15qF3 NA NA chr15 102865362 GCAxCAG C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.979524 0.979526 0.999997 97 0 0 9.575859 0.089286 0.02 1.302467 51 5 1419 145 60 60 0 0 CC 9.623304 32 0 885 0 KEEP + Hoxc4 NO AFB1_1 chr15 76073037 76073037 G A exonic Parp10 synonymous SNV NM_001163576:c.C460T:p.L154L exonic Parp10 synonymous SNV uc007wjj.2:c.C460T:p.L154L exonic ENSMUSG00000063268 synonymous SNV ENSMUST00000165738:c.C460T:p.L154L 15qD3 NA NA chr15 76073037 GCAxATT G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 126 0 0 15.324546 0.6 0.02 -0.087579 4 6 117 154 60 60 0 0 GG 30.08135 100 0 2851 0 KEEP - Parp10 NO AFB1_1 chr15 76135098 76135098 C A exonic Oplah nonsynonymous SNV NM_153122:c.G1054T:p.V352L exonic Oplah nonsynonymous SNV uc007wjo.1:c.G1054T:p.V352L exonic ENSMUSG00000022562 nonsynonymous SNV ENSMUST00000023222:c.G1054T:p.V352L 15qD3 NA NA chr15 76135098 CCAxCGT C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 175 0 0 93.869442 0.445783 0.02 0.967411 46 37 1305 1010 60 60 0 0 CC 19.571313 75 1 1956 27 KEEP - Oplah YES AFB1_1 chr15 78235992 78235992 C A exonic Tst nonsynonymous SNV NM_009437:c.G272T:p.S91I exonic Tst nonsynonymous SNV uc007wpd.1:c.G272T:p.S91I exonic ENSMUSG00000044986 nonsynonymous SNV ENSMUST00000058659:c.G272T:p.S91I 15qE1 NA NA chr15 78235992 TTGxTTA C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 70 0 0 10.86944 0.185185 0.02 -0.236787 22 5 635 141 60 60 0 0 CC 11.722744 39 0 1099 0 KEEP - Tst YES AFB1_1 chr15 79115783 79115783 G A exonic Baiap2l2 synonymous SNV NM_177580:c.C36T:p.T12T exonic Baiap2l2 synonymous SNV uc007wtb.1:c.C36T:p.T12T exonic ENSMUSG00000018126 synonymous SNV ENSMUST00000018270:c.C36T:p.T12T 15qE1 NA NA chr15 79115783 CATxGTG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 54 0 0 22.362423 0.571429 0.02 -0.122778 6 8 174 227 60 60 0 0 GG 9.625907 32 0 906 0 KEEP - Baiap2l2 NO AFB1_1 chr15 81542417 81542417 A C intronic Rangap1 NA NA intronic Rangap1 NA NA intronic ENSMUSG00000022391 NA NA 15qE1 NA NA chr15 81542417 CCCxCCC A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 55 0 0 11.021858 0.545455 0.02 -0.157155 5 6 133 115 60 60 0 0 AA 7.613036 29 1 682 9 KEEP - Rangap1 NO AFB1_1 chr15 82235658 82235658 C T intronic Cyp2d10 NA NA intronic "Cyp2d10,Cyp2d11" NA NA intronic ENSMUSG00000014372 NA NA 15qE1 NA NA chr15 82235658 AACxTCC C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 144 4 0 8.620539 0.066667 0.02 1.037526 70 5 1982 142 60 43 0 0 CC 19.229417 64 0 1769 0 KEEP - Cyp2d10 NO AFB1_1 chr15 89015774 89015774 G C intronic Dennd6b NA NA intronic Fam116b NA NA intronic ENSMUSG00000015377 NA NA 15qE3 NA NA chr15 89015774 CCCxCCT G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 237 1 0 6.92979 0.333333 0.02 -0.165573 10 5 230 87 60 60 0 0 GG 53.31217 178 0 4203 0 KEEP - Dennd6b NO AFB1_1 chr16 11994058 11994058 G A intronic Shisa9 NA NA intronic Shisa9 NA NA intronic ENSMUSG00000022494 NA NA 16qA1 NA NA chr16 11994058 AAAxCAC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.999741 0.999881 0.99986 122 1 0 7.255548 0.164179 0.02 0.71874 56 11 1496 145 70 60 0 1 GG 5.714692 19 0 525 0 KEEP + Shisa9 NO AFB1_1 chr16 15716115 15716115 G A exonic Prkdc nonsynonymous SNV NM_011159:c.G4723A:p.A1575T exonic Prkdc nonsynonymous SNV uc007yht.1:c.G4723A:p.A1575T exonic ENSMUSG00000022672 nonsynonymous SNV ENSMUST00000023352:c.G4723A:p.A1575T 16qA2 NA NA chr16 15716115 ATTxCTG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 66 2 0 8.093261 0.148148 0.02 -0.236767 23 4 646 111 60 60 0 0 GG 10.226783 34 0 948 0 KEEP + Prkdc NO AFB1_1 chr16 32754450 32754450 C T exonic Muc4 nonsynonymous SNV NM_080457:c.C4237T:p.L1413F exonic Muc4 nonsynonymous SNV uc012aeq.1:c.C4237T:p.L1413F exonic ENSMUSG00000079620 nonsynonymous SNV ENSMUST00000096106:c.C4237T:p.L1413F 16qB3 "Score=0.914754;Name=No.61897,chr16:32752082" NA chr16 32754450 ACCxTTC C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 287 6 40 12.58686 0.142857 0.02 1.239196 36 6 1032 172 36 25 0 0 CC 54.056555 186 1 5215 17 KEEP + Muc4 NO AFB1_1 chr16 32754476 32754476 C G exonic Muc4 nonsynonymous SNV NM_080457:c.C4263G:p.S1421R exonic Muc4 nonsynonymous SNV uc012aeq.1:c.C4263G:p.S1421R exonic ENSMUSG00000079620 nonsynonymous SNV ENSMUST00000096106:c.C4263G:p.S1421R 16qB3 "Score=0.914754;Name=No.61897,chr16:32752082" NA chr16 32754476 AAGxAAG C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 298 7 41 12.146612 0.117647 0.02 1.212909 45 6 1266 173 60 25 0 0 CC 58.584356 204 1 5699 26 KEEP + Muc4 NO AFB1_1 chr16 32756458 32756458 T A exonic Muc4 nonsynonymous SNV NM_080457:c.T6245A:p.L2082Q exonic Muc4 nonsynonymous SNV uc012aeq.1:c.T6245A:p.L2082Q exonic ENSMUSG00000079620 nonsynonymous SNV ENSMUST00000096106:c.T6245A:p.L2082Q 16qB3 "Score=0.914754;Name=No.61897,chr16:32752082" NA chr16 32756458 CCCxAAG T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 215 2 0 11.70015 0.1 0.02 1.169087 54 6 1505 173 60 29 0 0 TT 39.666349 132 0 3611 0 KEEP + Muc4 NO AFB1_1 chr16 32777810 32777810 G T exonic Muc4 nonsynonymous SNV NM_080457:c.G9742T:p.A3248S exonic Muc4 nonsynonymous SNV uc007yzh.1:c.G208T:p.A70S exonic ENSMUSG00000079620 nonsynonymous SNV ENSMUST00000115119:c.G208T:p.A70S 16qB3 NA NA chr16 32777810 AACxCCT G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 94 1 0 10.324842 0.147059 0.02 -0.298052 29 5 760 141 60 60 0 0 GG 14.067274 47 0 1214 0 KEEP + Muc4 YES AFB1_1 chr16 35860692 35860692 G C exonic Parp14 nonsynonymous SNV NM_001039530:c.C656G:p.A219G exonic Parp14 nonsynonymous SNV uc007zbs.2:c.C656G:p.A219G exonic ENSMUSG00000034422 nonsynonymous SNV ENSMUST00000042665:c.C656G:p.A219G 16qB3 NA NA chr16 35860692 GGGxCAA G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 125 2 0 8.219307 0.121212 0.02 -0.298165 29 4 821 116 60 60 0 0 GG 22.234118 74 0 1999 0 KEEP - Parp14 NO AFB1_1 chr16 44433845 44433845 A C exonic Wdr52 nonsynonymous SNV NM_001033247:c.A2818C:p.I940L exonic Wdr52 nonsynonymous SNV uc012agb.1:c.A2818C:p.I940L exonic ENSMUSG00000071550 nonsynonymous SNV ENSMUST00000120049:c.A2818C:p.I940L 16qB4 NA NA chr16 44433845 AAAxTTT A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.9978 0.999968 0.997832 118 1 0 23.849126 0.118812 0.02 2.80001 89 12 2511 341 60 60 0 0 AA 4.812375 16 0 441 0 KEEP + Wdr52 NO AFB1_1 chr17 13560989 13560989 A C exonic Tcp10c synonymous SNV NM_001167578:c.A963C:p.P321P exonic "Gm9880,Tcp10c" synonymous SNV uc008amh.2:c.A828C:p.P276P exonic ENSMUSG00000052469 synonymous SNV ENSMUST00000080075:c.A963C:p.P321P 17qA1 "Score=0.988245;Name=No.65318,chr17:13215505" NA chr17 13560989 CCCxAAT A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 87 0 0 10.178389 0.116279 0.02 -0.377088 38 5 1072 145 57 29 0 0 AA 11.416092 38 0 1025 0 KEEP + Tcp10c NO AFB1_1 chr17 20250748 20250748 C T intergenic "Vmn2r104(dist=65579),Fpr-rs6(dist=68294)" NA NA intergenic "Vmn2r104(dist=65579),Fpr-rs6(dist=68294)" NA NA exonic ENSMUSG00000071276 nonsynonymous SNV ENSMUST00000095637:c.G443A:p.G148E 17qA3.2 NA NA chr17 20250748 GATxCCA C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 65 1 0 19.342519 0.285714 0.02 -0.245561 20 8 584 228 60 60 0 0 CC 10.528216 35 0 997 0 KEEP NA Vmn2r104 NO AFB1_1 chr17 22588022 22588022 G C intronic Zfp946 NA NA intronic Zfp946 NA NA intronic ENSMUSG00000071266 NA NA 17qA3.3 NA NA chr17 22588022 ATTxTGA G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.989943 0.992094 0.997832 80 0 0 11.766366 0.095238 0.02 1.24104 57 6 1623 175 60 60 0 0 GG 4.813589 16 0 465 0 KEEP + Zfp946 NO AFB1_1 chr17 23819206 23819206 G T UTR3 Cldn6 NA NA UTR3 Cldn6 NA NA UTR3 ENSMUSG00000023906 NA NA 17qA3.3 NA NA chr17 23819206 CCAxCCC G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 65 1 0 10.341239 0.16129 0.02 -0.271857 26 5 742 139 60 60 0 0 GG 9.325006 31 0 876 0 KEEP + Cldn6 YES AFB1_1 chr17 35294485 35294485 C A exonic Prrc2a nonsynonymous SNV NM_001199044:c.G2273T:p.R758L exonic Prrc2a nonsynonymous SNV uc008cgj.2:c.G2273T:p.R758L exonic ENSMUSG00000024393 nonsynonymous SNV ENSMUST00000171992:c.G2273T:p.R758L 17qB1 NA NA chr17 35294485 GAGxGTT C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.739582 0.739671 0.999879 55 0 0 21.841763 0.28125 0.02 -0.280448 23 9 558 258 60 60 0 0 CC 6.608654 22 0 536 0 KEEP - Prrc2a YES AFB1_1 chr17 36220713 36220713 C G exonic H2-Bl unknown UNKNOWN exonic H2-Bl nonsynonymous SNV uc012asc.1:c.G286C:p.A96P exonic ENSMUSG00000073406 nonsynonymous SNV ENSMUST00000025333:c.G262C:p.A88P 17qB1 "Score=0.951462;Name=No.65666,chr17:36245854" NA chr17 36220713 TGGxGAT C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 705 7 0 110.198117 0.280488 0.02 3.621712 118 46 3061 1305 60 60 0 0 CC 137.458882 458 0 11557 0 KEEP - H2-Bl NO AFB1_1 chr17 43762435 43762435 G A exonic Tdrd6 nonsynonymous SNV NM_001161366:c.C4670T:p.A1557V exonic Tdrd6 nonsynonymous SNV uc008cpi.2:c.C4670T:p.A1557V exonic ENSMUSG00000040140 nonsynonymous SNV ENSMUST00000045717:c.C4670T:p.A1557V 17qB3 NA NA chr17 43762435 CCAxCAC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 98 2 0 9.068703 0.222222 0.02 -0.157866 14 4 414 113 60 60 0 0 GG 18.950269 63 0 1770 0 KEEP - Tdrd6 NO AFB1_1 chr17 47137605 47137605 C A exonic Ubr2 stopgain SNV NM_001177374:c.G268T:p.E90X exonic Ubr2 stopgain SNV uc008cup.2:c.G268T:p.E90X exonic ENSMUSG00000023977 stopgain SNV ENSMUST00000113335:c.G268T:p.E90X 17qC NA NA chr17 47137605 GCTxGAG C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 75 0 0 14.00403 0.25 0.02 -0.210391 18 6 472 170 60 60 0 0 CC 12.623703 42 0 1097 0 KEEP - Ubr2 YES AFB1_1 chr17 67981777 67981777 G A exonic Lrrc30 synonymous SNV NM_001033340:c.C147T:p.H49H exonic Lrrc30 synonymous SNV uc008dkf.1:c.C147T:p.H49H exonic ENSMUSG00000073375 synonymous SNV ENSMUST00000097290:c.C147T:p.H49H 17qE1.1 NA NA chr17 67981777 GACxTGC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 55 0 0 20.847184 0.444444 0.02 -0.1578 10 8 258 224 60 60 0 0 GG 10.768194 36 0 854 0 KEEP - Lrrc30 NO AFB1_1 chr18 20535493 20535493 T G intronic Dsg1b NA NA intronic Dsg1b NA NA intronic ENSMUSG00000061928 NA NA 18qA2 "Score=0.899388;Name=No.69608,chr18:20405213" NA chr18 20535493 GGAxTCT T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 122 0 3 7.421147 0.121212 0.02 -0.289377 29 4 813 108 60 60 0 0 TT 22.554649 75 0 2026 0 KEEP + Dsg1b NO AFB1_1 chr18 33992218 33992218 T A intronic Epb4.1l4a NA NA intronic "Epb4.1l4a,Epb41l4a" NA NA intronic ENSMUSG00000024376 NA NA 18qB1 NA NA chr18 33992218 AACxTTC T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 125 0 0 9.201777 0.25 0.02 -0.140315 12 4 344 112 60 60 0 0 TT 25.567668 85 0 2380 0 KEEP - Epb4.1l4a NO AFB1_1 chr18 37679457 37679457 C T exonic Pcdhb22 synonymous SNV NM_053147:c.C1323T:p.D441D exonic Pcdhb22 synonymous SNV uc012bby.1:c.C1323T:p.D441D exonic ENSMUSG00000073591 synonymous SNV ENSMUST00000097609:c.C1323T:p.D441D 18qB3 NA NA chr18 37679457 CGAxATC C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 278 0 0 7.720379 0.121212 0.02 -0.289383 29 4 814 111 60 21 0 0 CC 59.851719 199 0 5505 0 KEEP + Pcdhb22 NO AFB1_1 chr18 37679458 37679458 A G exonic Pcdhb22 nonsynonymous SNV NM_053147:c.A1324G:p.I442V exonic Pcdhb22 nonsynonymous SNV uc012bby.1:c.A1324G:p.I442V exonic ENSMUSG00000073591 nonsynonymous SNV ENSMUST00000097609:c.A1324G:p.I442V 18qB3 NA NA chr18 37679458 GACxTCA A G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 276 0 0 8.164283 0.117647 0.02 -0.298157 30 4 840 116 60 21 0 0 AA 58.606683 195 0 5167 0 KEEP + Pcdhb22 NO AFB1_1 chr18 42891530 42891530 C G exonic Ppp2r2b nonsynonymous SNV NM_028392:c.G367C:p.V123L exonic Ppp2r2b nonsynonymous SNV uc008eub.1:c.G358C:p.V120L exonic ENSMUSG00000024500 nonsynonymous SNV ENSMUST00000025377:c.G367C:p.V123L 18qB3 NA NA chr18 42891530 TGAxTTT C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 107 0 0 19.03741 0.466667 0.02 -0.131553 8 7 236 202 60 60 0 0 CC 20.756269 69 0 1964 0 KEEP - Ppp2r2b NO AFB1_1 chr18 61470715 61470715 T G exonic Ppargc1b synonymous SNV NM_133249:c.A1030C:p.R344R exonic Ppargc1b synonymous SNV uc008fbx.1:c.A1030C:p.R344R exonic ENSMUSG00000033871 synonymous SNV ENSMUST00000075299:c.A1030C:p.R344R 18qE1 NA NA chr18 61470715 CCCxTAG T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 129 0 0 8.062177 0.142857 0.02 -0.30691 30 5 870 119 60 60 0 0 TT 25.565714 85 0 2354 0 KEEP - Ppargc1b NO AFB1_1 chr18 62070843 62070843 A C intronic Ablim3 NA NA intronic Ablim3 NA NA intronic ENSMUSG00000032735 NA NA 18qE1 NA NA chr18 62070843 CCCxCCC A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 178 0 0 6.390024 0.416667 0.02 -0.104433 7 5 185 76 60 60 0 0 AA 38.403605 134 2 3402 15 KEEP - Ablim3 NO AFB1_1 chr18 74466780 74466780 T A intronic Ccdc11 NA NA intronic Ccdc11 NA NA intronic ENSMUSG00000035394 NA NA 18qE2 NA NA chr18 74466780 TTCxAAT T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.711964 0.717315 0.99254 42 0 0 15.950337 0.225806 0.02 -0.27187 24 7 695 198 60 60 0 0 TT 2.707103 9 0 251 0 KEEP + Ccdc11 NO AFB1_1 chr19 16836714 16836714 A G intronic Vps13a NA NA intronic Vps13a NA NA intronic ENSMUSG00000046230 NA NA 19qB NA NA chr19 16836714 ATTxTCC A G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.992702 0.999994 0.992708 125 2 0 25.643293 0.126126 0.02 2.22147 97 14 2660 372 60 60 0 0 AA 3.007332 10 0 269 0 KEEP - Vps13a NO AFB1_1 chr19 45076484 45076484 C G exonic Sema4g synonymous SNV NM_011976:c.C2511G:p.V837V exonic Sema4g synonymous SNV uc008hqf.1:c.C2511G:p.V837V exonic ENSMUSG00000025207 synonymous SNV ENSMUST00000026225:c.C2511G:p.V837V 19qC3 NA NA chr19 45076484 TGTxTGA C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.351495 0.353947 0.993072 38 0 0 16.108864 0.368421 0.02 -0.166528 12 7 338 182 60 60 0 0 CC 3.309341 11 0 320 0 KEEP + Sema4g NO AFB1_1 chr19 46210900 46210900 C A exonic Pitx3 nonsynonymous SNV NM_008852:c.G517T:p.A173S exonic Pitx3 nonsynonymous SNV uc008hsl.1:c.G517T:p.A173S exonic ENSMUSG00000025229 nonsynonymous SNV ENSMUST00000026259:c.G517T:p.A173S 19qC3 NA NA chr19 46210900 AGGxGAA C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 110 0 0 86.359047 0.638298 0.02 -0.420805 17 30 412 854 60 60 0 0 CC 14.120305 47 0 1159 0 KEEP - Pitx3 YES AFB1_1 chr1 133226073 133226073 C A intronic Srgap2 NA NA intronic Srgap2 NA NA intronic ENSMUSG00000026425 NA NA 1qE4 NA NA chr1 133226073 ATGxGCA C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.81835 0.818465 0.99986 58 1 0 41.390056 0.444444 0.02 -0.315598 20 16 531 445 60 60 0 0 CC 5.710618 19 0 487 0 KEEP - Srgap2 YES AFB1_1 chr1 135937058 135937058 C A exonic Fmod nonsynonymous SNV NM_021355:c.C258A:p.F86L exonic Fmod nonsynonymous SNV uc007crd.1:c.C258A:p.F86L exonic ENSMUSG00000041559 nonsynonymous SNV ENSMUST00000048183:c.C258A:p.F86L 1qE4 NA NA chr1 135937058 CTTxCCC C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 227 2 0 44.534158 0.548387 0.02 -0.271836 14 17 408 457 60 60 0 0 CC 49.910457 166 0 4643 0 KEEP + Fmod YES AFB1_1 chr1 137035882 137035882 G T intronic Ptpn7 NA NA intronic Ptpn7 NA NA intronic ENSMUSG00000031506 NA NA 1qE4 NA NA chr1 137035882 GCAxATC G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 78 0 0 14.768869 0.352941 0.02 -0.149082 11 6 318 167 60 60 0 0 GG 15.642829 52 0 1484 0 KEEP + Ptpn7 YES AFB1_1 chr1 158565196 158565196 C T exonic Abl2 nonsynonymous SNV NM_001136104:c.C1409T:p.A470V exonic Abl2 nonsynonymous SNV uc007dcl.2:c.C1409T:p.A470V exonic ENSMUSG00000026596 nonsynonymous SNV ENSMUST00000027888:c.C1409T:p.A470V 1qH1 NA NA chr1 158565196 CAGxGTT C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.865197 0.865745 0.999366 60 1 0 25.72165 0.289474 0.02 -0.341888 27 11 708 304 60 60 0 0 CC 5.091058 17 0 429 0 KEEP + Abl2 NO AFB1_1 chr1 173286846 173286846 G C exonic Pfdn2 nonsynonymous SNV NM_011070:c.G175C:p.D59H exonic Pfdn2 nonsynonymous SNV uc007doc.1:c.G175C:p.D59H exonic ENSMUSG00000006412 nonsynonymous SNV ENSMUST00000006579:c.G157C:p.D53H 1qH3 NA NA chr1 173286846 ATCxATA G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.780953 0.78106 0.999863 54 6 0 7.821215 0.121212 0.02 -0.298008 29 4 750 112 60 60 0 0 GG 6.012407 20 0 537 0 KEEP + Pfdn2 NO AFB1_1 chr1 180034226 180034226 C T intergenic "Gm16432(dist=55804),Desi2(dist=83322)" NA NA ncRNA_exonic EG545391 NA NA exonic ENSMUSG00000066667 nonsynonymous SNV ENSMUST00000111149:c.C1048T:p.L350F 1qH4 "Score=0.946144;Name=No.519,chr1:179767643" NA chr1 180034226 GTCxTTA C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 49 0 0 8.737149 0.16 0.02 -0.21926 21 4 617 116 60 23 0 0 CC 5.109775 17 0 477 0 KEEP NA Gm16432 NO AFB1_1 chr1 182514037 182514037 G A exonic Parp1 synonymous SNV NM_007415:c.G1014A:p.K338K exonic Parp1 synonymous SNV uc007dwi.1:c.G1014A:p.K338K exonic ENSMUSG00000026496 synonymous SNV ENSMUST00000027777:c.G1014A:p.K338K 1qH4 NA NA chr1 182514037 AAAxGTA G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 68 0 0 7.732677 0.375 0.02 -0.070158 5 3 143 86 60 60 0 0 GG 14.137934 47 0 1327 0 KEEP + Parp1 NO AFB1_1 chr1 182900276 182900276 C G intronic Tmem63a NA NA intronic Tmem63a NA NA intronic ENSMUSG00000026519 NA NA 1qH4 NA NA chr1 182900276 GAGxCAG C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 0.999999 68 1 0 16.281198 0.241379 0.02 -0.254305 22 7 614 199 60 60 0 0 CC 10.51132 35 0 945 0 KEEP + Tmem63a NO AFB1_1 chr1 192849495 192849495 G T exonic Mfsd7b nonsynonymous SNV NM_001081259:c.C478A:p.L160M exonic Mfsd7b nonsynonymous SNV uc007ebv.1:c.C478A:p.L160M exonic ENSMUSG00000066595 nonsynonymous SNV ENSMUST00000085635:c.C478A:p.L160M 1qH6 NA NA chr1 192849495 GCAxCCA G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.291975 0.292001 0.999909 41 0 0 14.768809 0.352941 0.02 -0.149084 11 6 317 167 60 60 0 0 GG 7.203517 24 0 640 0 KEEP - Mfsd7b YES AFB1_1 chr1 193186184 193186184 G C exonic Ppp2r5a nonsynonymous SNV NM_144880:c.C517G:p.P173A exonic Ppp2r5a nonsynonymous SNV uc007eci.1:c.C517G:p.P173A exonic ENSMUSG00000026626 nonsynonymous SNV ENSMUST00000067976:c.C517G:p.P173A 1qH6 NA NA chr1 193186184 CAGxACT G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 75 3 0 6.610803 0.166667 0.02 -0.157867 15 3 439 87 60 25 0 0 GG 12.935117 43 0 1225 0 KEEP - Ppp2r5a NO AFB1_1 chr1 38386644 38386644 T A intronic Aff3 NA NA intronic Aff3 NA NA intronic ENSMUSG00000037138 NA NA 1qB NA NA chr1 38386644 AACxACT T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 70 0 0 23.028872 0.409091 0.02 -0.192929 13 9 372 252 60 60 0 0 TT 12.030798 40 0 1114 0 KEEP - Aff3 NO AFB1_1 chr1 60558554 60558554 G C intronic Raph1 NA NA intronic Raph1 NA NA intronic ENSMUSG00000026014 NA NA 1qC2 NA NA chr1 60558554 CAGxCTT G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.961266 0.967425 0.993634 66 0 0 16.627457 0.153846 0.02 1.239192 44 8 1266 225 60 60 0 0 GG 3.609598 12 0 337 0 KEEP - Raph1 NO AFB1_1 chr1 63224329 63224329 T G exonic Eef1b2 nonsynonymous SNV NM_018796:c.T82G:p.Y28D exonic Eef1b2 nonsynonymous SNV uc007bfz.2:c.T82G:p.Y28D exonic ENSMUSG00000025967 nonsynonymous SNV ENSMUST00000129339:c.T82G:p.Y28D 1qC2 NA NA chr1 63224329 AGGxACG T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119875 0.120436 0.995343 31 0 0 7.05155 0.454545 0.02 -0.095916 6 5 149 80 60 60 0 0 TT 4.209315 14 0 365 0 KEEP + Eef1b2 NO AFB1_1 chr1 6792638 6792638 C T exonic St18 nonsynonymous SNV NM_173868:c.C515T:p.S172F exonic St18 nonsynonymous SNV uc007aga.1:c.C515T:p.S172F exonic ENSMUSG00000033740 nonsynonymous SNV ENSMUST00000139838:c.C515T:p.S172F 1qA1 NA NA chr1 6792638 ATTxCGA C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 91 2 0 45.125226 0.571429 0.02 -0.245559 12 16 349 458 60 60 0 0 CC 16.244153 54 0 1536 0 KEEP + St18 NO AFB1_1 chr2 102291301 102291301 G T exonic Fjx1 synonymous SNV NM_010218:c.C445A:p.R149R exonic Fjx1 synonymous SNV uc008lhw.1:c.C445A:p.R149R exonic ENSMUSG00000075012 synonymous SNV ENSMUST00000099678:c.C445A:p.R149R 2qE2 NA NA chr2 102291301 CCCxTGC G T AFB1_1_ATCACG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.421991 0.423478 0.99649 41 2 0 44.799958 0.714286 0.02 -0.184134 6 15 152 431 60 60 0 0 GG 4.50356 15 0 385 0 KEEP - Fjx1 YES AFB1_1 chr2 113436582 113436582 G T intronic Fmn1 NA NA intronic Fmn1 NA NA intronic ENSMUSG00000044042 NA NA 2qE4 NA NA chr2 113436582 GGGxTTT G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 77 0 0 10.592879 0.333333 0.02 -0.286588 14 7 362 131 60 60 2 0 GG 11.427887 38 0 1024 0 KEEP + Fmn1 YES AFB1_1 chr2 118067350 118067350 A C intronic Fsip1 NA NA intronic Fsip1 NA NA intronic ENSMUSG00000027344 NA NA 2qE5 NA NA chr2 118067350 GCAxTCT A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 74 0 0 10.464166 0.131579 0.02 -0.333241 33 5 933 145 60 60 0 0 AA 10.527468 35 0 972 0 KEEP - Fsip1 NO AFB1_1 chr2 119096426 119096426 C A exonic Rhov nonsynonymous SNV NM_145530:c.G259T:p.A87S exonic Rhov nonsynonymous SNV uc008ltm.2:c.G259T:p.A87S exonic ENSMUSG00000034226 nonsynonymous SNV ENSMUST00000037360:c.G259T:p.A87S 2qE5 NA NA chr2 119096426 CTGxGGT C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 236 2 0 14.808077 0.285714 0.02 -0.184117 15 6 398 174 60 60 0 0 CC 51.315977 171 0 4233 0 KEEP - Rhov YES AFB1_1 chr2 129110679 129110679 G A exonic Ckap2l synonymous SNV NM_181589:c.C1314T:p.A438A exonic Ckap2l synonymous SNV uc008mho.2:c.C1314T:p.A438A exonic ENSMUSG00000048327 synonymous SNV ENSMUST00000052708:c.C1314T:p.A438A 2qF1 NA NA chr2 129110679 ACTxGCT G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 99 3 0 64.163608 0.454545 0.02 1.212938 30 25 849 687 60 60 0 0 GG 12.01571 40 0 1099 0 KEEP - Ckap2l NO AFB1_1 chr2 130879434 130879434 G C exonic Adam33 nonsynonymous SNV NM_001163529:c.C1696G:p.P566A exonic "Adam33,mADAM33-alpha" nonsynonymous SNV uc008mkk.2:c.C52G:p.P18A exonic ENSMUSG00000027318 nonsynonymous SNV ENSMUST00000052104:c.C1696G:p.P566A 2qF1 NA NA chr2 130879434 AAGxCAG G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 121 0 0 14.765003 0.714286 0.02 -0.061389 2 5 58 142 60 60 0 0 GG 27.958668 93 0 2588 0 KEEP - Adam33 NO AFB1_1 chr2 139993901 139993901 C G exonic Esf1 nonsynonymous SNV NM_001081090:c.G250C:p.E84Q exonic Esf1 nonsynonymous SNV uc008mpn.1:c.G250C:p.E84Q exonic ENSMUSG00000045624 nonsynonymous SNV ENSMUST00000046030:c.G250C:p.E84Q 2qF3 NA NA chr2 139993901 CTTxATC C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.995299 0.999956 0.995343 117 2 0 19.811417 0.10101 0.02 0.925276 89 10 2591 291 70 60 0 0 CC 4.204467 14 0 390 0 KEEP - Esf1 NO AFB1_1 chr2 142675689 142675689 C G exonic Kif16b nonsynonymous SNV NM_001081133:c.G610C:p.A204P exonic Kif16b nonsynonymous SNV uc008mpz.1:c.G610C:p.A204P exonic ENSMUSG00000038844 nonsynonymous SNV ENSMUST00000043589:c.G610C:p.A204P 2qG1 NA NA chr2 142675689 CTGxGTC C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 54 0 0 7.333852 0.272727 0.02 -0.096398 8 3 192 87 60 60 0 0 CC 12.589588 42 0 927 0 KEEP - Kif16b NO AFB1_1 chr2 143777988 143777988 C A exonic Rrbp1 synonymous SNV NM_024281:c.G3873T:p.S1291S exonic Rrbp1 synonymous SNV uc008mqj.1:c.G3873T:p.S1291S exonic ENSMUSG00000027422 synonymous SNV ENSMUST00000016072:c.G3873T:p.S1291S 2qG1 NA NA chr2 143777988 CTGxGAT C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 84 0 0 16.351001 0.5 0.02 -0.105198 6 6 150 171 60 60 0 0 CC 15.326364 51 0 1291 0 KEEP - Rrbp1 YES AFB1_1 chr2 151532778 151532778 C G exonic Tmem74b nonsynonymous SNV NM_001160363:c.C688G:p.Q230E exonic 5430405G05Rik nonsynonymous SNV uc008nei.2:c.C688G:p.Q230E exonic ENSMUSG00000044364 nonsynonymous SNV ENSMUST00000060196:c.C688G:p.Q230E 2qG3 NA NA chr2 151532778 ACTxAGG C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.612352 0.612407 0.999909 55 3 0 39.457149 0.518519 0.02 -0.236803 13 14 384 409 60 60 0 0 CC 7.220215 24 0 694 0 KEEP + Tmem74b NO AFB1_1 chr2 152104797 152104797 G A exonic Csnk2a1 nonsynonymous SNV NM_007788:c.G1153A:p.A385T exonic Csnk2a1 nonsynonymous SNV uc008nfa.2:c.G1153A:p.A385T exonic ENSMUSG00000074698 nonsynonymous SNV ENSMUST00000099224:c.G1153A:p.A385T 2qG3 "Score=0.995643;Name=No.1036,chr1:158455417" NA chr2 152104797 CCAxCTG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 131 0 5 6.492559 0.176471 0.02 -0.149086 14 3 401 85 36 36 0 0 GG 32.769797 109 0 2962 0 KEEP + Csnk2a1 NO AFB1_1 chr2 153219464 153219464 G C exonic Asxl1 nonsynonymous SNV NM_001039939:c.G823C:p.A275P exonic Asxl1 nonsynonymous SNV uc008nhs.1:c.G823C:p.A275P exonic ENSMUSG00000042548 nonsynonymous SNV ENSMUST00000036193:c.G823C:p.A275P 2qH1 NA NA chr2 153219464 CATxCCC G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 136 0 0 7.79916 0.5 0.02 -0.087043 4 4 94 83 60 60 0 0 GG 26.74843 91 1 2519 5 KEEP + Asxl1 NO AFB1_1 chr2 161384692 161384692 G T exonic Ptprt synonymous SNV NM_021464:c.C3100A:p.R1034R exonic Ptprt synonymous SNV uc008nru.1:c.C727A:p.R243R exonic ENSMUSG00000053141 synonymous SNV ENSMUST00000109445:c.C3100A:p.R1034R 2qH2 NA NA chr2 161384692 CCCxGAT G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.799738 0.800245 0.999366 52 0 0 26.589395 0.314286 0.02 -0.306808 24 11 652 308 60 60 0 0 GG 5.09464 17 0 427 0 KEEP - Ptprt YES AFB1_1 chr2 164389560 164389560 C A exonic Wfdc2 nonsynonymous SNV NM_026323:c.C227A:p.P76Q exonic Wfdc2 nonsynonymous SNV uc008nve.1:c.C227A:p.P76Q exonic ENSMUSG00000017723 nonsynonymous SNV ENSMUST00000017867:c.C227A:p.P76Q 2qH3 NA NA chr2 164389560 GACxGAG C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 67 0 0 21.091891 0.36 0.02 -0.219037 16 9 426 239 60 60 0 0 CC 9.918841 33 0 854 0 KEEP + Wfdc2 YES AFB1_1 chr2 178207105 178207105 G C exonic Cdh26 nonsynonymous SNV NM_198656:c.G1901C:p.G634A exonic Cdh26 nonsynonymous SNV uc008ohr.1:c.G1901C:p.G634A exonic ENSMUSG00000039155 nonsynonymous SNV ENSMUST00000042092:c.G1901C:p.G634A 2qH4 NA NA chr2 178207105 GTGxCCA G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120431 0.120436 0.999957 40 0 0 6.93251 0.272727 0.02 -0.096462 8 3 227 83 60 60 0 0 GG 7.808586 26 0 701 0 KEEP + Cdh26 NO AFB1_1 chr2 26207747 26207747 C G upstream;downstream Dnlz;Card9 NA NA upstream;downstream Dnlz;Card9 NA NA UTR3 ENSMUSG00000026928 NA NA 2qA3 NA NA chr2 26207747 ATTxTAA C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 135 0 0 10.883772 0.092308 0.02 1.01127 59 6 1704 167 60 60 0 0 CC 14.138789 47 0 1343 0 KEEP NA Dnlz NO AFB1_1 chr2 26819620 26819620 C G exonic Rexo4 synonymous SNV NM_207234:c.G219C:p.P73P exonic Rexo4 synonymous SNV uc008iwn.1:c.G219C:p.P73P exonic ENSMUSG00000052406 synonymous SNV ENSMUST00000064244:c.G150C:p.P50P 2qA3 NA NA chr2 26819620 CGGxGGT C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 125 0 0 23.068063 0.428571 0.02 -0.184037 12 9 313 250 60 60 0 0 CC 27.924266 93 0 2357 0 KEEP - Rexo4 NO AFB1_1 chr2 28401351 28401351 A T intronic Ralgds NA NA intronic Ralgds NA NA intronic ENSMUSG00000026821 NA NA 2qA3 NA NA chr2 28401351 CCTxCAG A T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119875 0.120436 0.995343 28 0 0 7.232737 0.272727 0.02 -0.096457 8 3 219 86 60 60 0 0 AA 4.175446 14 0 352 0 KEEP + Ralgds NO AFB1_1 chr2 32941538 32941538 G A intronic Garnl3 NA NA UTR5 Garnl3 NA NA UTR5 ENSMUSG00000038860 NA NA 2qB NA NA chr2 32941538 AAAxGAA G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.908944 0.909069 0.999863 87 0 0 23.735468 0.25641 0.02 -0.376841 29 10 803 286 60 60 0 1 GG 5.70785 19 0 517 0 KEEP - Garnl3 NO AFB1_1 chr2 84577687 84577687 T A splicing Ypel4(NM_001005342:exon4:c.294+2T>A) NA NA splicing Ypel4(uc008kjc.1:exon4:c.294+2T>A) NA NA splicing "ENSMUSG00000034059(ENSMUST00000090729:exon4:c.294+2T>A,ENSMUST00000111643:exon3:c.126+2T>A)" NA NA 2qD NA NA chr2 84577687 ATGxAAG T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 59 0 0 6.679607 0.1875 0.02 -0.140305 13 3 360 86 60 60 0 0 TT 11.721527 39 0 1022 0 KEEP + Ypel4 NO AFB1_1 chr2 93709211 93709211 T A UTR5 Accsl NA NA UTR5 Accsl NA NA UTR5 ENSMUSG00000075023 NA NA 2qE1 NA NA chr2 93709211 CAGxCCG T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 217 3 0 28.400024 0.392857 0.02 -0.245543 17 11 477 313 60 60 0 0 TT 49.542795 165 0 4399 0 KEEP - Accsl NO AFB1_1 chr2 94141871 94141871 C G UTR3 Ttc17 NA NA UTR3 Ttc17 NA NA UTR3 ENSMUSG00000027194 NA NA 2qE1 NA NA chr2 94141871 GAGxCGA C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999998 81 1 0 33.96898 0.333333 0.02 -0.368311 28 14 793 389 60 60 0 0 CC 10.226247 34 0 939 0 KEEP - Ttc17 NO AFB1_1 chr3 142054743 142054743 G A exonic Pdlim5 synonymous SNV NM_001190857:c.C30T:p.G10G exonic Pdlim5 synonymous SNV uc012cyt.1:c.C30T:p.G10G exonic ENSMUSG00000028273 synonymous SNV ENSMUST00000058626:c.C30T:p.G10G 3qH1 "Score=0.928523;Name=No.82395,chr4:145167866" NA chr3 142054743 TGGxCCG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.78095 0.78106 0.999859 57 1 0 13.085168 0.176471 0.02 -0.298163 28 6 791 171 60 25 0 0 GG 5.413856 18 0 495 0 KEEP - Pdlim5 NO AFB1_1 chr3 142168370 142168370 A T exonic Gbp5 nonsynonymous SNV NM_153564:c.A896T:p.Y299F exonic Gbp5 nonsynonymous SNV uc008rop.1:c.A896T:p.Y299F exonic ENSMUSG00000040264 nonsynonymous SNV ENSMUST00000065526:c.A560T:p.Y187F 3qH1 NA NA chr3 142168370 CTTxTGT A T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.32057 0.322807 0.993072 32 0 0 9.268988 0.222222 0.02 -0.157844 14 4 388 115 60 60 0 0 AA 3.307978 11 0 295 0 KEEP + Gbp5 NO AFB1_1 chr3 157589784 157589784 C A intergenic "Cth(dist=1757),Ankrd13c(dist=20646)" NA NA intergenic "Cth(dist=1757),Ankrd13c(dist=20646)" NA NA ncRNA_exonic ENSMUSG00000028177 NA NA 3qH4 NA NA chr3 157589784 TCTxAGA C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999999 55 0 0 12.324258 0.357143 0.02 -0.122704 9 5 249 139 60 60 0 0 CC 10.529584 35 0 1015 0 KEEP NA Cth YES AFB1_1 chr3 36501858 36501858 C G exonic Bbs7 nonsynonymous SNV NM_027810:c.G742C:p.D248H exonic Bbs7 nonsynonymous SNV uc008ozp.2:c.G742C:p.D248H exonic ENSMUSG00000037325 nonsynonymous SNV ENSMUST00000040148:c.G742C:p.D248H 3qB NA NA chr3 36501858 TATxAAA C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 65 0 0 9.66861 0.222222 0.02 -0.157869 14 4 410 119 60 60 0 0 CC 10.228653 34 0 984 0 KEEP - Bbs7 NO AFB1_1 chr3 66782095 66782095 G C intronic Shox2 NA NA intronic Shox2 NA NA intronic ENSMUSG00000027833 NA NA 3qE1 NA NA chr3 66782095 CTCxCAA G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139817 0.139832 0.999892 38 0 0 10.093237 0.333333 0.02 -0.105158 8 4 186 115 60 60 0 0 GG 6.908245 23 0 552 0 KEEP - Shox2 NO AFB1_1 chr3 82812286 82812286 T C intronic Fgg NA NA intronic Fgg NA NA intronic ENSMUSG00000033860 NA NA 3qE3 NA NA chr3 82812286 AATxGAC T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.908971 0.909069 0.999892 72 0 0 79.86807 0.651163 0.02 -0.377051 15 28 427 786 60 60 0 0 TT 6.918203 23 0 641 0 KEEP + Fgg NO AFB1_1 chr3 90306071 90306071 C T exonic Chtop nonsynonymous SNV NM_023215:c.G436A:p.G146R exonic 2500003M10Rik nonsynonymous SNV uc008qcn.1:c.G508A:p.G170R exonic ENSMUSG00000001017 nonsynonymous SNV ENSMUST00000001043:c.G436A:p.G146R 3qF1 NA NA chr3 90306071 CTCxACG C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 46 3 0 11.55362 0.208333 0.02 -0.210464 19 5 535 145 60 25 0 0 CC 5.715499 19 0 539 0 KEEP - Chtop NO AFB1_1 chr3 90306074 90306074 G A exonic Chtop nonsynonymous SNV NM_023215:c.C433T:p.R145C exonic 2500003M10Rik nonsynonymous SNV uc008qcn.1:c.C505T:p.R169C exonic ENSMUSG00000001017 nonsynonymous SNV ENSMUST00000001043:c.C433T:p.R145C 3qF1 NA NA chr3 90306074 CACxCCC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 50 3 0 10.584334 0.178571 0.02 -0.245398 23 5 575 139 60 25 0 0 GG 5.710537 19 0 485 0 KEEP - Chtop NO AFB1_1 chr3 90306079 90306079 A G exonic Chtop nonsynonymous SNV NM_023215:c.T428C:p.L143P exonic 2500003M10Rik nonsynonymous SNV uc008qcn.1:c.T500C:p.L167P exonic ENSMUSG00000001017 nonsynonymous SNV ENSMUST00000001043:c.T428C:p.L143P 3qF1 NA NA chr3 90306079 CCTxGGC A G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 49 3 0 11.182784 0.178571 0.02 -0.245505 23 5 632 145 60 25 0 0 AA 5.714713 19 0 524 0 KEEP - Chtop NO AFB1_1 chr3 95851054 95851054 C T exonic Vps45 nonsynonymous SNV NM_013841:c.G443A:p.R148Q exonic Vps45 nonsynonymous SNV uc008qly.2:c.G443A:p.R148Q exonic ENSMUSG00000015747 nonsynonymous SNV ENSMUST00000015891:c.G443A:p.R148Q 3qF2.1 NA NA chr3 95851054 TTTxGAC C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.997832 1 0.997832 230 0 0 44.35224 0.107981 0.02 4.914531 190 23 4787 650 60 60 0 0 CC 4.805266 16 0 383 0 KEEP - Vps45 NO AFB1_1 chr4 100810462 100810462 G C intronic Raver2 NA NA intronic Raver2 NA NA intronic ENSMUSG00000035275 NA NA 4qC6 NA NA chr4 100810462 GAAxACG G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999998 75 0 0 23.930941 0.25641 0.02 -0.342031 29 10 842 288 60 60 0 0 GG 9.92535 33 0 928 0 KEEP + Raver2 NO AFB1_1 chr4 111609722 111609722 G C exonic Skint8 nonsynonymous SNV NM_001100466:c.G703C:p.A235P exonic Skint8 nonsynonymous SNV uc008udl.1:c.G703C:p.A235P exonic ENSMUSG00000078599 nonsynonymous SNV ENSMUST00000106572:c.G703C:p.A235P 4qD1 NA NA chr4 111609722 CTAxCAA G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 137 4 3 23.197124 0.666667 0.02 -0.105235 4 8 114 227 37 60 0 0 GG 31.282319 104 0 2915 0 KEEP + Skint8 NO AFB1_1 chr4 115836940 115836940 T A exonic Tspan1 nonsynonymous SNV NM_133681:c.A248T:p.K83M exonic Tspan1 nonsynonymous SNV uc008ugk.1:c.A248T:p.K83M exonic ENSMUSG00000028699 nonsynonymous SNV ENSMUST00000030465:c.A248T:p.K83M 4qD1 NA NA chr4 115836940 CACxTGT T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.902771 0.909069 0.993072 55 1 0 9.679447 0.116279 0.02 -0.377095 38 5 1087 140 60 60 0 0 TT 3.306626 11 0 290 0 KEEP - Tspan1 NO AFB1_1 chr4 126570500 126570500 A C intronic Zmym4 NA NA intronic Zmym4 NA NA intronic ENSMUSG00000042446 NA NA 4qD2.2 NA NA chr4 126570500 GTAxGTG A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 74 0 0 28.636224 0.478261 0.02 -0.201574 12 11 328 303 60 60 0 0 AA 12.329552 41 0 1132 0 KEEP - Zmym4 NO AFB1_1 chr4 134384234 134384234 G C exonic Tmem57 nonsynonymous SNV NM_025382:c.C842G:p.S281C exonic Tmem57 nonsynonymous SNV uc008vfq.1:c.C842G:p.S281C exonic ENSMUSG00000028826 nonsynonymous SNV ENSMUST00000030628:c.C842G:p.S281C 4qD3 NA NA chr4 134384234 TTAxAGT G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 89 0 0 7.567074 0.1 0.02 -0.350821 36 4 1067 113 60 60 0 0 GG 11.732789 39 0 1126 0 KEEP - Tmem57 NO AFB1_1 chr4 135608659 135608659 A C intronic Rpl11 NA NA intronic Rpl11 NA NA intronic ENSMUSG00000059291 NA NA 4qD3 NA NA chr4 135608659 AACxCCC A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16171 0.162467 0.995343 40 0 0 9.903829 0.5 0.02 -0.113498 6 6 161 107 60 60 0 0 AA 4.179309 14 0 315 0 KEEP - Rpl11 NO AFB1_1 chr4 137193023 137193023 T G intronic Usp48 NA NA intronic Usp48 NA NA UTR3 ENSMUSG00000043411 NA NA 4qD3 NA NA chr4 137193023 CACxTAG T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.99257 1 0.99257 197 1 0 11.01902 0.042781 0.02 3.14337 179 8 5101 215 60 60 0 0 TT 2.406283 8 0 222 0 KEEP + Usp48 NO AFB1_1 chr4 148823925 148823925 A T UTR3 Rbp7 NA NA UTR3 Rbp7 NA NA UTR3 ENSMUSG00000028996 NA NA 4qE2 NA NA chr4 148823925 TCTxCGA A T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 118 0 0 53.128841 0.558824 0.02 -0.298157 15 19 415 542 60 60 0 0 AA 22.851551 76 0 2006 0 KEEP - Rbp7 NO AFB1_1 chr4 150012647 150012647 C G exonic Slc45a1 synonymous SNV NM_173774:c.G888C:p.L296L exonic Slc45a1 synonymous SNV uc008vxt.1:c.G888C:p.L296L exonic ENSMUSG00000039838 synonymous SNV ENSMUST00000037827:c.G888C:p.L296L 4qE2 NA NA chr4 150012647 CCCxAGG C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 64 2 0 11.168305 0.277778 0.02 -0.15777 13 5 364 134 60 60 0 0 CC 10.350624 42 1 1166 21 KEEP - Slc45a1 NO AFB1_1 chr4 45412409 45412409 T G exonic Slc25a51 nonsynonymous SNV NM_001009949:c.A601C:p.S201R exonic Mcart1 nonsynonymous SNV uc008ssr.2:c.A601C:p.S201R exonic ENSMUSG00000045973 nonsynonymous SNV ENSMUST00000116341:c.A601C:p.S201R 4qB1 "Score=0.947541;Name=No.87911,chr7:135297487" NA chr4 45412409 GGCxCTC T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 310 0 0 8.006046 0.086207 0.02 1.088854 53 5 1462 130 60 60 0 0 TT 66.895992 223 0 5990 0 KEEP - Slc25a51 NO AFB1_1 chr4 58818503 58818503 T C exonic AI314180 nonsynonymous SNV NM_172381:c.A5132G:p.E1711G exonic AI314180 nonsynonymous SNV uc008sze.1:c.A5132G:p.E1711G exonic ENSMUSG00000050812 nonsynonymous SNV ENSMUST00000102889:c.A5132G:p.E1711G 4qB3 NA NA chr4 58818503 AGCxCCT T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999999 59 0 0 6.764132 0.4 0.02 -0.095967 6 4 169 78 60 60 0 0 TT 8.690655 34 1 856 13 KEEP - AI314180 NO AFB1_1 chr4 62125000 62125000 T G exonic Wdr31 nonsynonymous SNV NM_023597:c.A77C:p.K26T exonic Wdr31 nonsynonymous SNV uc008tet.1:c.A77C:p.K26T exonic ENSMUSG00000028391 nonsynonymous SNV ENSMUST00000030087:c.A77C:p.K26T 4qB3 NA NA chr4 62125000 AGTxTTC T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 92 0 0 50.846033 0.527778 0.02 -0.315694 17 19 487 526 60 60 0 0 TT 14.436418 48 0 1317 0 KEEP - Wdr31 NO AFB1_1 chr5 104483354 104483354 T C exonic Nudt9 synonymous SNV NM_028794:c.T411C:p.N137N exonic Nudt9 synonymous SNV uc008yka.1:c.T411C:p.N137N exonic ENSMUSG00000029310 synonymous SNV ENSMUST00000031250:c.T411C:p.N137N 5qE5 NA NA chr5 104483354 GAAxGGC T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 85 7 0 10.782824 0.178571 0.02 -0.245526 23 5 634 141 60 37 0 0 TT 13.82812 46 0 1224 0 KEEP + Nudt9 NO AFB1_1 chr5 104483355 104483355 G A exonic Nudt9 nonsynonymous SNV NM_028794:c.G412A:p.G138S exonic Nudt9 nonsynonymous SNV uc008yka.1:c.G412A:p.G138S exonic ENSMUSG00000029310 nonsynonymous SNV ENSMUST00000031250:c.G412A:p.G138S 5qE5 NA NA chr5 104483355 AATxGCC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 84 7 0 10.869447 0.185185 0.02 -0.236786 22 5 633 141 60 37 0 0 GG 13.536889 45 0 1280 0 KEEP + Nudt9 NO AFB1_1 chr5 104490737 104490737 G A exonic Nudt9 synonymous SNV NM_028794:c.G834A:p.A278A exonic Nudt9 synonymous SNV uc008yka.1:c.G834A:p.A278A exonic ENSMUSG00000029310 synonymous SNV ENSMUST00000031250:c.G834A:p.A278A 5qE5 NA NA chr5 104490737 TGCxTGG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.760782 0.760887 0.999863 57 5 0 12.772152 0.181818 0.02 -0.28928 27 6 701 167 60 37 0 0 GG 6.011923 20 0 516 0 KEEP + Nudt9 NO AFB1_1 chr5 110633986 110633986 A C exonic Golga3 nonsynonymous SNV NM_008146:c.A2603C:p.H868P exonic Golga3 nonsynonymous SNV uc008yqc.1:c.A2723C:p.H908P exonic ENSMUSG00000029502 nonsynonymous SNV ENSMUST00000031477:c.A2723C:p.H908P 5qF NA NA chr5 110633986 TTCxCCA A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.38739 0.387407 0.999957 52 0 0 34.477712 0.6 0.02 -0.175386 8 12 218 346 60 60 0 0 AA 7.819101 26 0 701 0 KEEP + Golga3 NO AFB1_1 chr5 118520413 118520413 C A exonic Fbxw8 nonsynonymous SNV NM_172721:c.G1483T:p.G495W exonic Fbxw8 nonsynonymous SNV uc008zge.1:c.G1483T:p.G495W exonic ENSMUSG00000032867 nonsynonymous SNV ENSMUST00000049474:c.G1483T:p.G495W 5qF NA NA chr5 118520413 GCCxCTC C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 109 0 0 20.2991 0.421053 0.02 -0.166614 11 8 312 221 60 60 0 0 CC 22.728429 76 0 2046 0 KEEP - Fbxw8 YES AFB1_1 chr5 120582119 120582119 G T ncRNA_intronic Gm10390 NA NA ncRNA_intronic AK169507 NA NA ncRNA_exonic ENSMUSG00000072671 NA NA 5qF NA NA chr5 120582119 TCCxGGC G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 0.999999 51 0 0 16.067392 0.461538 0.02 -0.113947 7 6 169 171 60 60 0 0 GG 10.465689 35 0 813 0 KEEP - Gm10390 YES AFB1_1 chr5 122278757 122278757 C A exonic Sh2b3 nonsynonymous SNV NM_008507:c.G302T:p.R101L exonic Sh2b3 nonsynonymous SNV uc008zkg.1:c.G302T:p.R101L exonic ENSMUSG00000042594 nonsynonymous SNV ENSMUST00000040308:c.G302T:p.R101L 5qF NA NA chr5 122278757 CTGxGTG C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.902315 0.909069 0.99257 53 1 0 19.22151 0.209302 0.02 -0.376811 34 9 883 245 60 60 0 0 CC 2.399062 8 0 184 0 KEEP - Sh2b3 YES AFB1_1 chr5 129527955 129527955 G A exonic Ran nonsynonymous SNV NM_009391:c.G325A:p.V109I exonic Ran nonsynonymous SNV uc008zss.1:c.G325A:p.V109I exonic ENSMUSG00000029430 nonsynonymous SNV ENSMUST00000111343:c.G325A:p.V109I 5qG1.3 "Score=0.989017;Name=No.78336,chr2:41841491" NA chr5 129527955 CTGxTAC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 165 29 3 7.456616 0.051546 0.02 0.844589 92 5 2618 136 60 37 0 0 GG 19.550754 65 0 1805 0 KEEP + Ran NO AFB1_1 chr5 130475368 130475368 C G exonic Gusb nonsynonymous SNV NM_010368:c.G752C:p.G251A exonic Gusb nonsynonymous SNV uc008ztu.1:c.G185C:p.G62A exonic ENSMUSG00000025534 nonsynonymous SNV ENSMUST00000026613:c.G752C:p.G251A 5qG1.3 NA NA chr5 130475368 CTGxCCT C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.963687 0.963774 0.999909 81 0 0 16.603025 0.156863 0.02 1.248184 43 8 1196 224 60 60 0 0 CC 7.212939 24 0 653 0 KEEP - Gusb NO AFB1_1 chr5 134697667 134697667 G A exonic Ncf1 nonsynonymous SNV NM_010876:c.C1126T:p.H376Y exonic Ncf1 nonsynonymous SNV uc008zvh.2:c.C1126T:p.H376Y exonic ENSMUSG00000015950 nonsynonymous SNV ENSMUST00000016094:c.C1168T:p.H390Y 5qG2 NA NA chr5 134697667 GGTxCAG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 80 0 0 29.016127 0.769231 0.02 -0.113992 3 10 85 273 60 60 0 0 GG 16.845832 56 0 1594 0 KEEP - Ncf1 NO AFB1_1 chr5 144267851 144267851 G A exonic Rac1 synonymous SNV NM_009007:c.C571T:p.L191L exonic Rac1 synonymous SNV uc009akk.1:c.C571T:p.L191L exonic ENSMUSG00000001847 synonymous SNV ENSMUST00000080537:c.C571T:p.L191L 5qG2 "Score=0.966165;Name=No.59813,chr15:93243428" NA chr5 144267851 ACAxCAG G A AFB1_1_ATCACG 7-E185-R-P_1 0 DBSNP COVERED 0.999968 0.999968 1 178 0 4 14.092069 0.079208 0.02 2.309073 93 8 2599 224 60 36 0 0 GG 20.15513 67 0 1912 0 KEEP - Rac1 NO AFB1_1 chr5 146810108 146810108 C T exonic Cyp3a25 synonymous SNV NM_019792:c.G273A:p.K91K exonic Cyp3a25 synonymous SNV uc009amz.2:c.G273A:p.K91K exonic ENSMUSG00000029630 synonymous SNV ENSMUST00000068317:c.G273A:p.K91K 5qG3 "Score=0.948135;Name=No.91048,chr5:146880716" NA chr5 146810108 AATxTTG C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 140 2 4 7.721566 0.097561 0.02 -0.359588 37 4 1089 115 60 23 0 0 CC 18.38431 71 1 2058 28 KEEP - Cyp3a25 NO AFB1_1 chr5 20953223 20953223 G C intronic Fam185a NA NA intronic Fam185a NA NA intronic ENSMUSG00000047221 NA NA 5qA3 NA NA chr5 20953223 GATxTGA G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.99986 28 0 0 14.88643 0.625 0.02 -0.07016 3 5 83 148 60 60 0 0 GG 5.713642 19 0 512 0 KEEP + Fam185a NO AFB1_1 chr5 3344472 3344472 G A exonic Cdk6 nonsynonymous SNV NM_009873:c.G106A:p.G36S exonic Cdk6 nonsynonymous SNV uc008wgv.1:c.G106A:p.G36S exonic ENSMUSG00000040274 nonsynonymous SNV ENSMUST00000042410:c.G106A:p.G36S 5qA1 "Score=0.933791;Name=No.38061,chr13:3356653" NA chr5 3344472 AACxGCG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 122 0 0 20.124273 0.214286 0.02 -0.385535 33 9 775 253 60 25 0 0 GG 18.935411 63 0 1632 0 KEEP + Cdk6 NO AFB1_1 chr5 34542359 34542359 T A exonic Zfyve28 nonsynonymous SNV NM_001015039:c.A2143T:p.R715W exonic Zfyve28 nonsynonymous SNV uc008xca.1:c.A2143T:p.R715W exonic ENSMUSG00000037224 nonsynonymous SNV ENSMUST00000094868:c.A2143T:p.R715W 5qB2 NA NA chr5 34542359 ACCxGGT T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09903 0.099721 0.993072 21 0 0 20.784981 0.7 0.02 -0.087697 3 7 84 201 60 60 0 0 TT 3.308703 11 0 307 0 KEEP - Zfyve28 NO AFB1_1 chr5 34542360 34542360 G A exonic Zfyve28 synonymous SNV NM_001015039:c.C2142T:p.T714T exonic Zfyve28 synonymous SNV uc008xca.1:c.C2142T:p.T714T exonic ENSMUSG00000037224 synonymous SNV ENSMUST00000094868:c.C2142T:p.T714T 5qB2 NA NA chr5 34542360 CCTxGTG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098994 0.099721 0.992708 20 0 0 20.984893 0.7 0.02 -0.087702 3 7 87 203 60 60 0 0 GG 3.008314 10 0 287 0 KEEP - Zfyve28 NO AFB1_1 chr6 124382118 124382118 A T exonic Clstn3 nonsynonymous SNV NM_153508:c.T2588A:p.V863D exonic Clstn3 nonsynonymous SNV uc009dqw.2:c.T2588A:p.V863D exonic ENSMUSG00000008153 nonsynonymous SNV ENSMUST00000008297:c.T2588A:p.V863D 6qF2 NA NA chr6 124382118 ATAxCCA A T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.353901 0.353947 0.999869 45 0 0 30.629062 0.578947 0.02 -0.166615 8 11 224 310 60 60 0 0 AA 6.313193 21 0 559 0 KEEP - Clstn3 NO AFB1_1 chr6 129968831 129968831 C A intronic "Klra15,Klra19,Klra22,Klra6" NA NA ncRNA_intronic Ly49A NA NA intronic ENSMUSG00000061769 NA NA 6qF3 NA NA chr6 129968831 GGGxAAG C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 134 1 0 9.396925 0.086207 0.02 1.16912 53 5 1476 144 60 45 0 0 CC 18.211892 64 1 1774 9 KEEP NA Klra15 YES AFB1_1 chr6 130075132 130075132 G A exonic "Klra21,Klra8" synonymous SNV NM_001101620:c.C357T:p.I119I exonic "Klra21,Klra8" synonymous SNV uc009ehn.2:c.C357T:p.I119I exonic ENSMUSG00000089727 synonymous SNV ENSMUST00000014476:c.C357T:p.I119I 6qF3 "Score=0.927638;Name=No.94097,chr6:130075880" NA chr6 130075132 TTTxATG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 160 5 15 9.189657 0.098039 0.02 1.150081 46 5 1335 139 60 25 0 0 GG 30.083516 100 0 2877 0 KEEP NA Klra21 NO AFB1_1 chr6 130176500 130176500 A T exonic Klra7 nonsynonymous SNV NM_014194:c.T521A:p.I174N exonic Klra7 nonsynonymous SNV uc012etx.1:c.T431A:p.I144N exonic ENSMUSG00000067599 nonsynonymous SNV ENSMUST00000112012:c.T431A:p.I144N 6qF3 "Score=0.952842;Name=No.94102,chr6:130240217" NA chr6 130176500 GAAxTCT A T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 80 1 4 8.415067 0.166667 0.02 -0.210458 20 4 558 112 60 23 0 0 AA 13.83501 46 0 1261 0 KEEP - Klra7 NO AFB1_1 chr6 142057964 142057964 C A exonic Slco1a6 synonymous SNV NM_023718:c.G774T:p.L258L exonic Slco1a6 synonymous SNV uc009eow.2:c.G774T:p.L258L exonic ENSMUSG00000079262 synonymous SNV ENSMUST00000111827:c.G774T:p.L258L 6qG2 NA NA chr6 142057964 GGTxAGG C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 222 0 18 15.930237 0.259259 0.02 -0.236775 20 7 582 193 57 36 0 0 CC 49.025589 163 0 4669 0 KEEP - Slco1a6 YES AFB1_1 chr6 148758444 148758444 A C exonic Ipo8 nonsynonymous SNV NM_001081113:c.T867G:p.F289L exonic Ipo8 nonsynonymous SNV uc009etl.1:c.T867G:p.F289L exonic ENSMUSG00000040029 nonsynonymous SNV ENSMUST00000048418:c.T867G:p.F289L 6qG3 NA NA chr6 148758444 AGAxAAT A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999999 0.999999 161 0 0 24.697665 0.105691 0.02 2.311782 110 13 3138 365 60 60 0 0 AA 10.527681 35 0 976 0 KEEP - Ipo8 NO AFB1_1 chr6 149277044 149277044 A G exonic 2810474O19Rik nonsynonymous SNV NM_026054:c.A3065G:p.D1022G exonic 2810474O19Rik nonsynonymous SNV uc009eud.2:c.A3065G:p.D1022G exonic ENSMUSG00000032712 nonsynonymous SNV ENSMUST00000046689:c.A3065G:p.D1022G 6qG3 NA NA chr6 149277044 AAGxCAA A G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.995711 0.999218 0.99649 97 1 0 41.769749 0.225 0.02 1.091971 62 18 1749 517 60 60 0 0 AA 4.509828 15 0 402 0 KEEP + 2810474O19Rik NO AFB1_1 chr6 4480973 4480973 C G exonic Col1a2 nonsynonymous SNV NM_007743:c.C2114G:p.A705G exonic Col1a2 nonsynonymous SNV uc009avm.1:c.C2114G:p.A705G exonic ENSMUSG00000029661 nonsynonymous SNV ENSMUST00000169615:c.C1811G:p.A604G 6qA1 NA NA chr6 4480973 CTGxCGG C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 179 2 0 20.731279 0.257143 0.02 -0.306905 26 9 726 251 60 60 0 0 CC 36.939844 123 0 3349 0 KEEP + Col1a2 NO AFB1_1 chr6 52184762 52184762 C A exonic Hoxa10 nonsynonymous SNV NM_008263:c.G172T:p.A58S exonic Hoxa10 nonsynonymous SNV uc009bym.1:c.G172T:p.A58S exonic ENSMUSG00000000938 nonsynonymous SNV ENSMUST00000000962:c.G121T:p.A41S 6qB3 NA NA chr6 52184762 GGGxGTA C A AFB1_1_ATCACG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL UNCOVERED 0.099721 0.099721 0.999997 48 1 0 13.900829 0.555556 0.02 -0.08766 4 5 101 142 60 60 0 0 CC 8.712656 29 0 774 0 KEEP - Hoxa10 YES AFB1_1 chr6 73010267 73010267 C A exonic Dnah6 stopgain SNV NM_001164669:c.G9985T:p.E3329X exonic Dnahc6 stopgain SNV uc009cjk.2:c.G9985T:p.E3329X exonic ENSMUSG00000052861 stopgain SNV ENSMUST00000114040:c.G9829T:p.E3277X 6qC1 NA NA chr6 73010267 TCTxAGA C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.899232 0.899314 0.999909 74 0 0 23.261839 0.238095 0.02 -0.36834 32 10 925 285 60 60 0 0 CC 7.220237 24 0 694 0 KEEP - Dnah6 YES AFB1_1 chr6 83218333 83218333 C G exonic Slc4a5 nonsynonymous SNV NM_001166067:c.C1066G:p.P356A exonic Slc4a5 nonsynonymous SNV uc012enx.1:c.C1066G:p.P356A exonic ENSMUSG00000068323 nonsynonymous SNV ENSMUST00000039212:c.C1066G:p.P356A 6qC3 NA NA chr6 83218333 ATGxCAG C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 99 4 0 11.381141 0.238095 0.02 -0.184154 16 5 453 140 60 60 0 0 CC 19.209779 64 0 1718 0 KEEP + Slc4a5 NO AFB1_1 chr6 91216388 91216388 C G exonic Fbln2 synonymous SNV NM_001081437:c.C2751G:p.S917S exonic Fbln2 synonymous SNV uc009cxx.1:c.C2751G:p.S917S exonic ENSMUSG00000064080 synonymous SNV ENSMUST00000113498:c.C2751G:p.S917S 6qD1 NA NA chr6 91216388 CTCxTGC C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 130 0 0 6.332256 0.272727 0.02 -0.096456 8 3 232 77 60 60 0 0 CC 31.281332 104 0 2916 0 KEEP + Fbln2 NO AFB1_1 chr7 109388539 109388539 G T exonic Rhog nonsynonymous SNV NM_019566:c.C220A:p.Q74K exonic Rhog nonsynonymous SNV uc009irk.1:c.C220A:p.Q74K exonic ENSMUSG00000073982 nonsynonymous SNV ENSMUST00000098230:c.C220A:p.Q74K 7qE3 "Score=0.916519;Name=No.88069,chr4:97900903" NA chr7 109388539 TCTxAGG G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 94 0 1 12.332629 0.130435 0.02 -0.403426 40 6 1163 172 60 48 0 0 GG 13.236071 44 0 1259 0 KEEP - Rhog YES AFB1_1 chr7 109388553 109388553 G A exonic Rhog nonsynonymous SNV NM_019566:c.C206T:p.T69I exonic Rhog nonsynonymous SNV uc009irk.1:c.C206T:p.T69I exonic ENSMUSG00000073982 nonsynonymous SNV ENSMUST00000098230:c.C206T:p.T69I 7qE3 "Score=0.916519;Name=No.88069,chr4:97900903" NA chr7 109388553 AGGxTGC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 93 0 1 7.454446 0.088889 0.02 -0.39437 41 4 1139 114 60 48 0 0 GG 13.53432 45 0 1235 0 KEEP - Rhog NO AFB1_1 chr7 127001516 127001516 G C exonic Dcun1d3 nonsynonymous SNV NM_001163703:c.C486G:p.I162M exonic Dcun1d3 nonsynonymous SNV uc009jly.2:c.C486G:p.I162M exonic ENSMUSG00000048787 nonsynonymous SNV ENSMUST00000059851:c.C486G:p.I162M 7qF2 NA NA chr7 127001516 ACAxATC G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 40 0 0 9.169474 0.222222 0.02 -0.15781 14 4 401 114 60 60 0 0 GG 5.715807 19 0 545 0 KEEP - Dcun1d3 NO AFB1_1 chr7 130624193 130624193 C G exonic Zkscan2 nonsynonymous SNV NM_001081329:c.G2054C:p.R685T exonic Zkscan2 nonsynonymous SNV uc009jps.1:c.G2054C:p.R685T exonic ENSMUSG00000030757 nonsynonymous SNV ENSMUST00000042470:c.G2054C:p.R685T 7qF3 NA NA chr7 130624193 AGTxTTT C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.993064 0.999992 0.993072 123 0 0 33.869915 0.148148 0.02 2.434467 92 16 2717 459 60 60 0 0 CC 3.309256 11 0 318 0 KEEP - Zkscan2 NO AFB1_1 chr7 135212192 135212192 C G exonic Itgam nonsynonymous SNV NM_001082960:c.C220G:p.H74D exonic Itgam nonsynonymous SNV uc009jxw.1:c.C220G:p.H74D exonic ENSMUSG00000030786 nonsynonymous SNV ENSMUST00000064821:c.C220G:p.H74D 7qF3 NA NA chr7 135212192 TGTxACC C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999997 48 0 0 17.069917 0.545455 0.02 -0.096473 5 6 146 175 60 60 0 0 CC 9.315542 31 0 858 0 KEEP + Itgam NO AFB1_1 chr7 135212236 135212236 C T intronic Itgam NA NA intronic Itgam NA NA intronic ENSMUSG00000030786 NA NA 7qF3 NA NA chr7 135212236 GCTxCTG C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 31 0 0 19.44163 0.538462 0.02 -0.114006 6 7 171 200 60 60 0 0 CC 5.11354 17 0 476 0 KEEP + Itgam NO AFB1_1 chr7 135228510 135228510 T G exonic Itgam nonsynonymous SNV NM_001082960:c.T1072G:p.S358A exonic Itgam nonsynonymous SNV uc009jxw.1:c.T1072G:p.S358A exonic ENSMUSG00000030786 nonsynonymous SNV ENSMUST00000064821:c.T1072G:p.S358A 7qF3 NA NA chr7 135228510 GCTxCCA T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.99986 45 0 0 14.457183 0.3 0.02 -0.175392 14 6 399 169 60 60 0 0 TT 5.715061 19 0 530 0 KEEP + Itgam NO AFB1_1 chr7 135270649 135270649 G A intergenic "Itgam(dist=8644),Itgax(dist=2433)" NA NA UTR3 Itgam NA NA UTR3 ENSMUSG00000030786 NA NA 7qF3 NA NA chr7 135270649 AGCxGAA G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 62 2 0 19.013514 0.32 0.02 -0.219109 17 8 420 220 60 60 0 0 GG 10.223903 34 0 918 0 KEEP NA Itgam NO AFB1_1 chr7 135333423 135333423 G A intronic Itgad NA NA intronic Itgad NA NA intronic ENSMUSG00000070369 NA NA 7qF3 "Score=0.98419;Name=No.101633,chr7:135278984" NA chr7 135333423 TAAxTGG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 139 0 6 16.235161 0.166667 0.02 -0.438037 40 8 1113 218 60 29 0 0 GG 21.342339 71 0 1937 0 KEEP + Itgad NO AFB1_1 chr7 135333574 135333574 G A exonic Itgad synonymous SNV NM_001029872:c.G1695A:p.A565A exonic Itgad synonymous SNV uc009jyd.2:c.G1593A:p.A531A exonic ENSMUSG00000070369 synonymous SNV ENSMUST00000098012:c.G1539A:p.A513A 7qF3 "Score=0.98419;Name=No.101633,chr7:135278984" NA chr7 135333574 GGCxGCT G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 77 0 4 35.831585 0.388889 0.02 -0.31567 22 14 606 396 46 60 0 0 GG 9.001791 30 0 762 0 KEEP + Itgad NO AFB1_1 chr7 135335947 135335947 G A ncRNA_intronic 4931431B13Rik NA NA ncRNA_intronic AK007137 NA NA intronic ENSMUSG00000070369 NA NA 7qF3 NA NA chr7 135335947 GAAxACC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 65 0 0 7.243219 0.333333 0.02 -0.087699 6 3 176 83 60 60 0 0 GG 13.536866 45 0 1283 0 KEEP - 4931431B13Rik NO AFB1_1 chr7 135410886 135410886 T C exonic Slc5a2 synonymous SNV NM_133254:c.T333C:p.F111F exonic Slc5a2 synonymous SNV uc009jyu.1:c.T333C:p.F111F exonic ENSMUSG00000030781 synonymous SNV ENSMUST00000118169:c.T333C:p.F111F 7qF3 NA NA chr7 135410886 TTTxGTG T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 58 0 0 6.542497 0.333333 0.02 -0.087677 6 3 170 76 60 60 0 0 TT 11.428348 38 0 1036 0 KEEP + Slc5a2 NO AFB1_1 chr7 135415429 135415429 T G UTR3 BC017158 NA NA UTR3 BC017158 NA NA UTR3 ENSMUSG00000030780 NA NA 7qF3 NA NA chr7 135415429 CTCxGGG T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 146 3 0 25.525131 0.478261 0.02 -0.201632 12 11 344 272 60 60 0 0 TT 30.958486 103 0 2785 0 KEEP - BC017158 NO AFB1_1 chr7 135434179 135434179 A G intronic BC017158 NA NA intronic BC017158 NA NA intronic ENSMUSG00000030780 NA NA 7qF3 NA NA chr7 135434179 AGGxCAA A G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 51 0 0 15.165419 0.375 0.02 -0.140305 10 6 277 169 60 60 0 0 AA 9.624095 32 0 873 0 KEEP - BC017158 NO AFB1_1 chr7 135589166 135589166 T C exonic Tial1 synonymous SNV NM_009383:c.A606G:p.E202E exonic Tial1 synonymous SNV uc009jyy.1:c.A606G:p.E202E exonic ENSMUSG00000030846 synonymous SNV ENSMUST00000033135:c.A555G:p.E185E 7qF3 NA NA chr7 135589166 ACTxTCT T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 99 0 0 39.483595 0.538462 0.02 -0.236784 12 14 339 406 60 60 0 0 TT 18.348055 61 0 1697 0 KEEP - Tial1 NO AFB1_1 chr7 135888604 135888604 C T exonic Sec23ip synonymous SNV NM_001029982:c.C69T:p.S23S exonic Sec23ip synonymous SNV uc009jzj.2:c.C69T:p.S23S exonic ENSMUSG00000055319 synonymous SNV ENSMUST00000042942:c.C69T:p.S23S 7qF3 NA NA chr7 135888604 CTCxTCC C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043786 0.043787 0.999988 38 1 0 14.865393 0.714286 0.02 -0.061387 2 5 56 143 60 60 0 0 CC 8.120753 27 0 757 0 KEEP + Sec23ip NO AFB1_1 chr7 136400681 136400681 T C exonic Ppapdc1a synonymous SNV NM_001080963:c.T54C:p.F18F exonic Ppapdc1a synonymous SNV uc009jzl.1:c.T54C:p.F18F exonic ENSMUSG00000070366 synonymous SNV ENSMUST00000094018:c.T54C:p.F18F 7qF3 NA NA chr7 136400681 CTTxGTG T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 63 0 0 25.564065 0.625 0.02 -0.140251 6 10 170 254 60 60 0 0 TT 12.932965 43 0 1180 0 KEEP + Ppapdc1a NO AFB1_1 chr7 144651099 144651099 G T ncRNA_intronic Gm12669 NA NA intronic Glrx3 NA NA intronic ENSMUSG00000031068 NA NA 7qF4 NA NA chr7 144651099 GACxTTT G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.717215 0.717315 0.99986 52 0 0 47.649052 0.548387 0.02 -0.271687 14 17 332 488 60 60 0 0 GG 5.705831 19 0 448 0 KEEP + Gm12669 YES AFB1_1 chr7 148824775 148824775 C A exonic Muc6 unknown UNKNOWN exonic Muc6 synonymous SNV uc009klu.2:c.G5292T:p.S1764S exonic ENSMUSG00000048191 synonymous SNV ENSMUST00000062451:c.G5673T:p.S1891S 7qF5 NA NA chr7 148824775 TTGxGAG C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 818 2 57 32.860616 0.061093 0.02 7.437491 292 19 7232 548 60 60 0 0 CC 116.795359 389 0 9729 0 KEEP - Muc6 YES AFB1_1 chr7 26122931 26122931 G T exonic Megf8 nonsynonymous SNV NM_001160400:c.G2236T:p.A746S exonic Megf8 nonsynonymous SNV uc009fsj.2:c.G2236T:p.A746S exonic ENSMUSG00000045039 nonsynonymous SNV ENSMUST00000128119:c.G2236T:p.A746S 7qA3 NA NA chr7 26122931 TGGxCTC G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 81 0 0 10.522911 0.444444 0.02 -0.07892 5 4 138 113 60 60 0 0 GG 17.745307 59 0 1637 0 KEEP + Megf8 YES AFB1_1 chr7 27816278 27816278 G T exonic Cyp2a12 synonymous SNV NM_133657:c.G648T:p.G216G exonic Cyp2a12 synonymous SNV uc009fux.1:c.G648T:p.G216G exonic ENSMUSG00000060407 synonymous SNV ENSMUST00000075552:c.G648T:p.G216G 7qA3 "Score=0.931319;Name=No.100292,chr7:27679822" NA chr7 27816278 AGGxCAG G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 85 1 1 9.676628 0.363636 0.02 -0.105224 7 4 196 109 60 60 0 0 GG 19.549499 65 0 1780 0 KEEP + Cyp2a12 YES AFB1_1 chr7 31661010 31661010 A G exonic Cd22 nonsynonymous SNV NM_009845:c.T625C:p.S209P exonic Cd22 nonsynonymous SNV uc009ggr.2:c.T625C:p.S209P exonic ENSMUSG00000030577 nonsynonymous SNV ENSMUST00000019248:c.T625C:p.S209P 7qB1 NA NA chr7 31661010 AGGxGGT A G AFB1_1_ATCACG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.689252 0.693668 0.993634 42 0 0 33.685354 0.433333 0.02 -0.263079 17 13 482 364 60 60 0 0 AA 3.610169 12 0 349 0 KEEP - Cd22 NO AFB1_1 chr7 3863607 3863607 G A exonic Lilra6 synonymous SNV NM_011090:c.C1503T:p.L501L exonic Lilra6 synonymous SNV uc009ewp.2:c.C1503T:p.L501L exonic ENSMUSG00000030427 synonymous SNV ENSMUST00000038176:c.C1503T:p.L501L 7qA1 "Score=0.942681;Name=No.96083,chr7:4224202" NA chr7 3863607 GGAxAGG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 287 0 23 19.263918 0.071429 0.02 3.726329 143 11 4188 312 60 29 0 0 GG 27.976333 93 0 2664 0 KEEP - Lilra6 NO AFB1_1 chr7 38767892 38767892 G A exonic Uri1 synonymous SNV NM_011274:c.C222T:p.V74V exonic C80913 synonymous SNV uc009gkp.2:c.C222T:p.V74V exonic ENSMUSG00000030421 synonymous SNV ENSMUST00000085513:c.C222T:p.V74V 7qB2 NA NA chr7 38767892 CATxACG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 52 0 0 7.924235 0.5 0.02 -0.052617 3 3 87 83 60 60 0 0 GG 11.431093 38 0 1087 0 KEEP - Uri1 NO AFB1_1 chr7 48544837 48544837 T G exonic Gm5592 nonsynonymous SNV NM_001033782:c.T2172G:p.S724R exonic Gm5592 nonsynonymous SNV uc009glk.1:c.T2172G:p.S724R exonic ENSMUSG00000072259 nonsynonymous SNV ENSMUST00000097044:c.T2172G:p.S724R 7qB3 "Score=0.960073;Name=No.101182,chr7:48330835" NA chr7 48544837 CAGxTCC T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 208 0 0 13.20229 0.171429 0.02 -0.306926 29 6 811 173 55 37 0 0 TT 48.115585 160 0 4325 0 KEEP + Gm5592 NO AFB1_1 chr7 48544848 48544848 C T exonic Gm5592 nonsynonymous SNV NM_001033782:c.C2183T:p.P728L exonic Gm5592 nonsynonymous SNV uc009glk.1:c.C2183T:p.P728L exonic ENSMUSG00000072259 nonsynonymous SNV ENSMUST00000097044:c.C2183T:p.P728L 7qB3 "Score=0.960073;Name=No.101182,chr7:48330835" NA chr7 48544848 GACxTAA C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 224 0 0 16.451192 0.225806 0.02 -0.271808 24 7 674 203 55 37 0 0 CC 54.443953 181 0 5078 0 KEEP + Gm5592 NO AFB1_1 chr7 52113855 52113855 G T exonic Pnkp nonsynonymous SNV NM_021549:c.G231T:p.Q77H exonic Pnkp nonsynonymous SNV uc009grg.1:c.G231T:p.Q77H exonic ENSMUSG00000002963 nonsynonymous SNV ENSMUST00000003044:c.G231T:p.Q77H 7qB4 NA NA chr7 52113855 CCAxGAG G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 83 2 0 11.667361 0.277778 0.02 -0.157851 13 5 372 139 60 60 0 0 GG 15.341615 51 0 1456 0 KEEP + Pnkp YES AFB1_1 chr7 52990489 52990489 C T intronic Sult2b1 NA NA intronic Sult2b1 NA NA intronic ENSMUSG00000003271 NA NA 7qB4 NA NA chr7 52990489 CACxGCC C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999997 41 0 0 6.753148 1 0.02 -0.01754 0 2 0 58 0 60 0 0 CC 9.620134 32 0 848 0 KEEP - Sult2b1 NO AFB1_1 chr7 52990547 52990547 A G exonic Sult2b1 synonymous SNV NM_017465:c.T372C:p.P124P exonic Sult2b1 synonymous SNV uc009gxa.1:c.T474C:p.P158P exonic ENSMUSG00000003271 synonymous SNV ENSMUST00000107735:c.T474C:p.P158P 7qB4 NA NA chr7 52990547 AATxGGG A G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 81 0 0 10.122006 0.444444 0.02 -0.078921 5 4 144 109 60 60 0 0 AA 17.743117 59 0 1597 0 KEEP - Sult2b1 NO AFB1_1 chr7 53059014 53059014 A C exonic Lmtk3 nonsynonymous SNV NM_001005511:c.A4271C:p.N1424T exonic "Lmtk3,aatyk3" nonsynonymous SNV uc009gxe.1:c.A4271C:p.N1424T exonic ENSMUSG00000062044 nonsynonymous SNV ENSMUST00000120005:c.A4271C:p.N1424T 7qB4 NA NA chr7 53059014 AGAxCTG A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 231 4 0 13.036768 0.166667 0.02 -0.368065 35 7 972 179 60 60 0 0 AA 44.799939 149 0 4022 0 KEEP + Lmtk3 NO AFB1_1 chr7 53186381 53186381 A C intronic Ccdc114 NA NA UTR3 Ccdc114 NA NA UTR3 ENSMUSG00000040189 NA NA 7qB4 NA NA chr7 53186381 GTGxCAG A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 94 0 0 19.347817 0.307692 0.02 -0.228 18 8 504 225 60 60 0 0 AA 17.411132 58 0 1591 0 KEEP + Ccdc114 NO AFB1_1 chr7 86052305 86052305 A T UTR3 Aen NA NA UTR3 Aen NA NA UTR3 ENSMUSG00000030609 NA NA 7qD3 NA NA chr7 86052305 GTCxCGG A T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138942 0.139832 0.993634 24 0 0 19.99896 0.583333 0.02 -0.105234 5 7 138 202 60 60 0 0 AA 3.608323 12 0 317 0 KEEP + Aen NO AFB1_1 chr7 86579119 86579119 A G exonic Fanci nonsynonymous SNV NM_145946:c.A2386G:p.T796A exonic Fanci nonsynonymous SNV uc009hyi.1:c.A2107G:p.T703A exonic ENSMUSG00000039187 nonsynonymous SNV ENSMUST00000137667:c.A2302G:p.T768A 7qD3 NA NA chr7 86579119 ATGxCCA A G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 0.999999 53 0 0 16.265222 0.461538 0.02 -0.114008 7 6 199 173 60 60 0 0 AA 10.52737 35 0 972 0 KEEP + Fanci NO AFB1_1 chr7 98860294 98860294 C T intronic Dlg2 NA NA intronic Dlg2 NA NA exonic ENSMUSG00000052572 nonsynonymous SNV ENSMUST00000107193:c.C109T:p.H37Y 7qE1 NA NA chr7 98860294 CAAxACG C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.994904 0.999559 0.995343 100 0 0 91.959774 0.445783 0.02 0.86095 46 37 1282 991 60 60 0 0 CC 4.199221 14 0 379 0 KEEP + Dlg2 NO AFB1_1 chr8 107372105 107372105 T C intronic Ces2c NA NA intronic Ces2c NA NA intronic ENSMUSG00000061825 NA NA 8qD3 NA NA chr8 107372105 AAGxTTT T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 264 4 0 14.761927 0.132075 0.02 1.328766 46 7 1296 204 60 60 0 0 TT 50.525019 168 0 4611 0 KEEP + Ces2c NO AFB1_1 chr8 108404855 108404855 C A UTR5 Edc4 NA NA UTR5 Edc4 NA NA UTR5 ENSMUSG00000036270 NA NA 8qD3 NA NA chr8 108404855 GAAxTGC C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.988129 0.993703 0.994391 79 0 0 13.106223 0.107692 0.02 1.027439 58 7 1616 194 60 60 0 0 CC 3.908291 13 0 339 0 KEEP + Edc4 YES AFB1_1 chr8 109707537 109707537 G A exonic Cyb5b nonsynonymous SNV NM_025558:c.G410A:p.R137H exonic Cyb5b nonsynonymous SNV uc009nhg.1:c.G410A:p.R137H exonic ENSMUSG00000031924 nonsynonymous SNV ENSMUST00000034400:c.G410A:p.R137H 8qD3 NA NA chr8 109707537 ATCxTCA G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 124 1 0 6.47325 0.2 0.02 -0.131514 12 3 324 83 60 60 0 0 GG 26.14697 87 0 2212 0 KEEP + Cyb5b NO AFB1_1 chr8 111480477 111480477 C A exonic Zfhx3 stopgain SNV NM_007496:c.C10647A:p.Y3549X exonic Zfhx3 stopgain SNV uc009nid.1:c.C10647A:p.Y3549X exonic ENSMUSG00000038872 stopgain SNV ENSMUST00000043896:c.C10647A:p.Y3549X 8qD3 NA NA chr8 111480477 GTAxCAC C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 40 0 0 8.769245 0.222222 0.02 -0.157831 14 4 388 110 60 60 0 0 CC 5.954317 20 0 483 0 KEEP + Zfhx3 YES AFB1_1 chr8 11227072 11227072 C A exonic Col4a1 nonsynonymous SNV NM_009931:c.G1606T:p.D536Y exonic Col4a1 nonsynonymous SNV uc009kvb.2:c.G1606T:p.D536Y exonic ENSMUSG00000031502 nonsynonymous SNV ENSMUST00000033898:c.G1606T:p.D536Y 8qA1.1 NA NA chr8 11227072 TGTxAAA C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.949137 0.954491 0.994391 65 0 0 15.562933 0.163265 0.02 -0.429622 41 8 1201 212 60 60 0 0 CC 3.910672 13 0 371 0 KEEP - Col4a1 YES AFB1_1 chr8 112970476 112970476 T G exonic Hydin nonsynonymous SNV NM_172916:c.T2890G:p.L964V exonic Hydin nonsynonymous SNV uc009nkr.1:c.T2890G:p.L964V exonic ENSMUSG00000059854 nonsynonymous SNV ENSMUST00000043141:c.T2890G:p.L964V 8qE1 NA NA chr8 112970476 AACxTGG T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 64 0 0 13.102913 0.25 0.02 -0.210442 18 6 506 161 60 60 0 0 TT 10.222225 34 0 930 0 KEEP + Hydin NO AFB1_1 chr8 114529607 114529607 T C exonic Kars synonymous SNV NM_053092:c.A141G:p.L47L exonic Kars synonymous SNV uc009nne.2:c.A141G:p.L47L exonic ENSMUSG00000031948 synonymous SNV ENSMUST00000034426:c.A141G:p.L47L 8qE1 NA NA chr8 114529607 GTTxAGC T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 117 21 0 10.033211 0.119048 0.02 -0.36829 37 5 1022 143 60 60 0 0 TT 23.98144 80 0 2116 0 KEEP - Kars NO AFB1_1 chr8 125945572 125945572 G A exonic Tubb3 nonsynonymous SNV NM_023279:c.G1343A:p.G448E exonic Tubb3 nonsynonymous SNV uc009nvt.1:c.G1343A:p.G448E exonic ENSMUSG00000062380 nonsynonymous SNV ENSMUST00000071134:c.G1343A:p.G448E 8qE1 "Score=0.962016;Name=No.94952,chr6:136348774" NA chr8 125945572 AGGxGCC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 67 0 1 8.980325 0.181818 0.02 -0.192929 18 4 512 116 60 25 0 0 GG 12.030613 40 0 1108 0 KEEP + Tubb3 NO AFB1_1 chr8 126861118 126861118 A C intronic Galnt2 NA NA intronic Galnt2 NA NA intronic "ENSMUSG00000089704,ENSMUSG00000092329" NA NA 8qE2 NA NA chr8 126861118 TGGxACA A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.196298 0.196312 0.999931 40 0 0 6.673312 0.214286 0.02 -0.122776 11 3 315 84 60 23 0 0 AA 7.519335 25 0 689 0 KEEP + Galnt2 NO AFB1_1 chr8 129847988 129847988 C A exonic Pard3 synonymous SNV NM_001013580:c.C225A:p.S75S exonic Pard3 synonymous SNV uc009nzk.2:c.C225A:p.S75S exonic ENSMUSG00000025812 synonymous SNV ENSMUST00000160717:c.C225A:p.S75S 8qE2 NA NA chr8 129847988 GTCxAAC C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.985529 0.986153 0.999366 81 2 0 73.924826 0.474576 0.02 1.177823 31 28 890 783 60 60 0 0 CC 5.114005 17 0 485 0 KEEP + Pard3 YES AFB1_1 chr8 16234130 16234130 C T exonic Csmd1 nonsynonymous SNV NM_053171:c.G1613A:p.R538Q exonic Csmd1 nonsynonymous SNV uc009kzp.1:c.G1613A:p.R538Q exonic ENSMUSG00000060924 nonsynonymous SNV ENSMUST00000110789:c.G518A:p.R173Q 8qA1.2 NA NA chr8 16234130 GTCxGCT C T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 35 1 0 7.079671 0.3 0.02 -0.08764 7 3 171 83 60 60 0 0 CC 7.207517 24 0 570 0 KEEP - Csmd1 NO AFB1_1 chr8 16234131 16234131 G A exonic Csmd1 nonsynonymous SNV NM_053171:c.C1612T:p.R538W exonic Csmd1 nonsynonymous SNV uc009kzp.1:c.C1612T:p.R538W exonic ENSMUSG00000060924 nonsynonymous SNV ENSMUST00000110789:c.C517T:p.R173W 8qA1.2 NA NA chr8 16234131 TCCxCTT G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 34 1 0 6.878943 0.3 0.02 -0.087668 7 3 186 81 60 60 0 0 GG 7.216335 24 0 640 0 KEEP - Csmd1 NO AFB1_1 chr8 19497717 19497717 T A UTR3 Defb7 NA NA UTR3 Defb7 NA NA UTR3 ENSMUSG00000037790 NA NA 8qA1.3 NA NA chr8 19497717 GAAxTTG T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 36 0 0 6.878497 0.3 0.02 -0.087687 7 3 196 81 60 37 0 0 TT 7.216989 24 0 649 0 KEEP + Defb7 NO AFB1_1 chr8 22466594 22466594 G A exonic Defa-rs1 nonsynonymous SNV NM_007844:c.C61T:p.P21S exonic Defa-rs1 nonsynonymous SNV uc009lbp.1:c.C61T:p.P21S exonic ENSMUSG00000074437 nonsynonymous SNV ENSMUST00000098890:c.C61T:p.P21S 8qA2 "Score=0.983823;Name=No.103997,chr8:22704716" NA chr8 22466594 TAGxATC G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 327 7 62 17.251098 0.163265 0.02 -0.429735 41 8 1189 229 53 25 0 0 GG 67.799883 234 1 6576 24 KEEP - Defa-rs1 NO AFB1_1 chr8 24068735 24068735 T C intergenic "Kat6a(dist=15001),Ank1(dist=16573)" NA NA intergenic "Myst3(dist=15001),Ank1(dist=16619)" NA NA ncRNA_exonic ENSMUSG00000058567 NA NA 8qA2 NA NA chr8 24068735 CTCxGTA T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 302 0 9 9.089335 0.061224 0.02 0.93413 92 6 2613 160 60 23 0 0 TT 49.625977 165 0 4553 0 KEEP NA Kat6a NO AFB1_1 chr8 34974758 34974758 G A intronic Rbpms NA NA intronic Rbpms NA NA intronic ENSMUSG00000031586 NA NA 8qA4 NA NA chr8 34974758 TGGxATT G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.991954 0.992094 0.999859 81 0 0 14.003493 0.111111 0.02 1.142703 56 7 1627 202 60 60 0 0 GG 5.413359 18 0 501 0 KEEP - Rbpms NO AFB1_1 chr8 3531505 3531505 C A exonic Pnpla6 nonsynonymous SNV NM_015801:c.C1777A:p.Q593K exonic Pnpla6 nonsynonymous SNV uc009krt.1:c.C1861A:p.Q621K exonic ENSMUSG00000004565 nonsynonymous SNV ENSMUST00000004681:c.C1777A:p.Q593K 8qA1.1 NA NA chr8 3531505 CGCxAGA C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 145 3 0 38.49563 0.583333 0.02 -0.210459 10 14 284 389 60 60 0 0 CC 31.276127 104 0 2921 0 KEEP + Pnpla6 YES AFB1_1 chr8 63014478 63014478 T A intronic Aadat NA NA intronic Aadat NA NA intronic ENSMUSG00000057228 NA NA 8qB3.1 NA NA chr8 63014478 CAGxGTT T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.421102 0.423478 0.994391 35 0 0 26.858469 0.47619 0.02 -0.184151 11 10 303 284 60 60 0 0 TT 3.909358 13 0 349 0 KEEP + Aadat NO AFB1_1 chr8 75226871 75226871 A C exonic Nwd1 nonsynonymous SNV NM_176940:c.A3458C:p.Q1153P exonic Nwd1 nonsynonymous SNV uc009mgn.2:c.A2978C:p.Q993P exonic ENSMUSG00000048148 nonsynonymous SNV ENSMUST00000093427:c.A3458C:p.Q1153P 8qB3.3 NA NA chr8 75226871 TCCxGGT A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120425 0.120436 0.999909 39 0 0 19.80486 0.727273 0.02 -0.096388 3 8 86 188 60 60 0 0 AA 7.218765 24 0 667 0 KEEP + Nwd1 NO AFB1_1 chr8 87595831 87595831 C G exonic Dhps nonsynonymous SNV NM_001039514:c.C86G:p.A29G exonic Dhps nonsynonymous SNV uc009mpf.1:c.C86G:p.A29G exonic ENSMUSG00000060038 nonsynonymous SNV ENSMUST00000078665:c.C86G:p.A29G 8qC3 NA NA chr8 87595831 GCGxCCA C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 51 0 0 11.602252 0.25 0.02 -0.175393 15 5 428 141 60 60 0 0 CC 8.118587 27 0 732 0 KEEP + Dhps NO AFB1_1 chr8 96824785 96824785 G T exonic Nup93 nonsynonymous SNV NM_172410:c.G920T:p.G307V exonic Nup93 nonsynonymous SNV uc009mwb.1:c.G551T:p.G184V exonic ENSMUSG00000032939 nonsynonymous SNV ENSMUST00000109547:c.G920T:p.G307V 8qC5 NA NA chr8 96824785 CAGxACT G T AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 105 0 0 10.066509 0.15625 0.02 -0.280645 27 5 792 137 60 60 0 0 GG 15.985225 58 1 1639 13 KEEP + Nup93 YES AFB1_1 chr8 97461194 97461194 T G exonic Gpr114 nonsynonymous SNV NM_001033468:c.T758G:p.I253S exonic Gpr114 nonsynonymous SNV uc009mxi.2:c.T758G:p.I253S exonic ENSMUSG00000061577 nonsynonymous SNV ENSMUST00000074570:c.T758G:p.I253S 8qD1 NA NA chr8 97461194 GCAxCTC T G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 79 0 0 29.63222 0.478261 0.02 -0.201694 12 11 335 313 60 60 0 0 TT 14.435077 48 0 1302 0 KEEP + Gpr114 NO AFB1_1 chr8 97527335 97527335 G A exonic Gpr56 synonymous SNV NM_001198894:c.G249A:p.E83E exonic Gpr56 synonymous SNV uc009mxo.2:c.G249A:p.E83E exonic ENSMUSG00000031785 synonymous SNV ENSMUST00000093271:c.G249A:p.E83E 8qD1 NA NA chr8 97527335 AGAxCCT G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 107 2 0 6.37367 0.2 0.02 -0.131485 12 3 331 82 60 60 0 0 GG 23.46045 78 0 2169 0 KEEP + Gpr56 NO AFB1_1 chr9 108208112 108208112 C G exonic Tcta nonsynonymous SNV NM_133986:c.G164C:p.G55A exonic Tcta nonsynonymous SNV uc009rpd.1:c.G164C:p.G55A exonic ENSMUSG00000039461 nonsynonymous SNV ENSMUST00000044725:c.G164C:p.G55A 9qF2 NA NA chr9 108208112 ATGxCCA C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 48 1 0 9.481342 0.235294 0.02 -0.149089 13 4 372 116 60 60 0 0 CC 8.701981 29 0 777 0 KEEP - Tcta NO AFB1_1 chr9 110275502 110275502 G A exonic Scap nonsynonymous SNV NM_001001144:c.G433A:p.E145K exonic Scap nonsynonymous SNV uc009rtw.2:c.G433A:p.E145K exonic ENSMUSG00000032485 nonsynonymous SNV ENSMUST00000098350:c.G433A:p.E145K 9qF2 NA NA chr9 110275502 GAGxAGG G A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.387356 0.387407 0.999869 44 0 0 17.915928 0.35 0.02 -0.175404 13 7 379 202 60 60 0 0 GG 6.307037 21 0 570 0 KEEP + Scap NO AFB1_1 chr9 121153598 121153598 A C intronic Ulk4 NA NA intronic Ulk4 NA NA intronic ENSMUSG00000040936 NA NA 9qF4 NA NA chr9 121153598 ACTxCCA A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139822 0.139832 0.999931 42 0 0 9.683672 0.583333 0.02 -0.104015 5 7 113 100 60 60 0 0 AA 5.634831 23 2 575 11 KEEP - Ulk4 NO AFB1_1 chr9 66702459 66702459 C A intronic Rab8b NA NA intronic Rab8b NA NA intronic ENSMUSG00000036943 NA NA 9qC NA NA chr9 66702459 CTGxTCC C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 82 0 0 8.680434 0.181818 0.02 -0.19294 18 4 523 113 60 60 0 0 CC 15.035997 50 0 1370 0 KEEP - Rab8b YES AFB1_1 chr9 96588130 96588130 C A exonic Zbtb38 nonsynonymous SNV NM_175537:c.G1319T:p.S440I exonic Zbtb38 nonsynonymous SNV uc009rcp.1:c.G1319T:p.S440I exonic ENSMUSG00000040433 nonsynonymous SNV ENSMUST00000171500:c.G1319T:p.S440I 9qE3.3 NA NA chr9 96588130 GCAxTCC C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 164 0 0 42.321267 0.470588 0.02 -0.298151 18 16 504 449 60 60 0 0 CC 34.563316 115 0 3090 0 KEEP - Zbtb38 YES AFB1_1 chrX 11635033 11635033 C A exonic Bcor synonymous SNV NM_001168321:c.G1449T:p.P483P exonic Bcor synonymous SNV uc009sqq.2:c.G1449T:p.P483P exonic ENSMUSG00000040363 synonymous SNV ENSMUST00000043441:c.G1449T:p.P483P XqA1.1 NA NA chrX 11635033 TTTxGGA C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 62 0 0 33.064749 1 0.02 -0.087695 0 10 0 283 0 60 0 0 CC 14.134277 47 0 1297 0 KEEP - Bcor YES AFB1_1 chrX 132529059 132529059 G C UTR3 Arxes2 NA NA UTR3 2900062L11Rik NA NA UTR3 ENSMUSG00000048040 NA NA XqF1 "Score=0.992226;Name=No.114286,chrX:132567200" NA chrX 132529059 TTGxAAA G C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 108 1 0 20.282577 0.333333 0.02 -0.21048 16 8 463 231 60 60 0 0 GG 21.596574 72 0 2021 0 KEEP + Arxes2 NO AFB1_1 chrX 147078288 147078288 A C UTR3 Pfkfb1 NA NA UTR3 Pfkfb1 NA NA UTR3 ENSMUSG00000025271 NA NA XqF3 NA NA chrX 147078288 ATAxGTT A C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.893084 0.899314 0.993072 53 0 0 9.135987 0.119048 0.02 -0.368309 37 5 1050 134 60 60 0 0 AA 3.308162 11 0 303 0 KEEP + Pfkfb1 NO AFB1_1 chrX 147089208 147089208 A G exonic Tro nonsynonymous SNV NM_001002272:c.T995C:p.I332T exonic Tro nonsynonymous SNV uc009uop.1:c.T818C:p.I273T exonic ENSMUSG00000025272 nonsynonymous SNV ENSMUST00000026307:c.T995C:p.I332T XqF3 NA NA chrX 147089208 TCAxTCT A G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 643 2 1 9.006253 0.050847 0.02 2.552593 112 6 3096 164 60 23 0 0 AA 127.384682 428 1 11536 11 KEEP - Tro NO AFB1_1 chrX 160598800 160598800 T A exonic Ace2 nonsynonymous SNV NM_027286:c.T688A:p.F230I exonic Ace2 nonsynonymous SNV uc009uvg.1:c.T688A:p.F230I exonic ENSMUSG00000015405 nonsynonymous SNV ENSMUST00000073973:c.T688A:p.F230I XqF5 NA NA chrX 160598800 ACCxTCG T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.954405 0.954491 0.999909 77 0 0 160.335905 1 0.02 -0.429628 0 49 0 1370 0 60 0 0 TT 7.218711 24 0 665 0 KEEP + Ace2 NO AFB1_1 chrX 160598801 160598801 T A exonic Ace2 nonsynonymous SNV NM_027286:c.T689A:p.F230Y exonic Ace2 nonsynonymous SNV uc009uvg.1:c.T689A:p.F230Y exonic ENSMUSG00000015405 nonsynonymous SNV ENSMUST00000073973:c.T689A:p.F230Y XqF5 NA NA chrX 160598801 CCTxCGC T A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.948316 0.948402 0.999909 75 0 0 154.162527 1 0.02 -0.420881 0 48 0 1313 0 60 0 0 TT 7.219132 24 0 672 0 KEEP + Ace2 NO AFB1_1 chrX 166421884 166421884 A G intronic Mid1 NA NA ncRNA_intronic Fxy NA NA ncRNA_intronic ENSMUSG00000087263 NA NA XqF5 NA NA chrX 166421884 ATTxCAG A G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 353 3 0 9.265117 0.040268 0.02 2.075131 143 6 3947 173 60 37 0 0 AA 46.88488 156 0 4147 0 KEEP + Mid1 NO AFB1_1 chrX 53873592 53873592 C A exonic Slc9a6 nonsynonymous SNV NM_172780:c.C418A:p.P140T exonic Slc9a6 nonsynonymous SNV uc009tgk.2:c.C418A:p.P140T exonic ENSMUSG00000060681 nonsynonymous SNV ENSMUST00000077741:c.C418A:p.P140T XqA5 NA NA chrX 53873592 AGTxCAA C A AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999998 51 0 0 14.664569 0.375 0.02 -0.140315 10 6 293 164 60 60 0 0 CC 9.926204 33 0 926 0 KEEP + Slc9a6 YES AFB1_1 chrX 94273606 94273606 C G exonic Pgr15l synonymous SNV NM_001033361:c.C1263G:p.V421V exonic Pgr15l synonymous SNV uc009tur.1:c.C1263G:p.V421V exonic ENSMUSG00000031212 synonymous SNV ENSMUST00000033556:c.C1263G:p.V421V XqC3 NA NA chrX 94273606 GGTxTCT C G AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16246 0.162467 0.999957 41 0 0 8.722114 0.307692 0.02 -0.113969 9 4 264 103 60 60 0 0 CC 7.821476 26 0 744 0 KEEP + Pgr15l NO AFB1_1 chrY 730532 730532 T C exonic Usp9y nonsynonymous SNV NM_148943:c.A1640G:p.K547R exonic Usp9y nonsynonymous SNV uc009uzo.1:c.A1640G:p.K547R exonic ENSMUSG00000069044 nonsynonymous SNV ENSMUST00000091188:c.A1640G:p.K547R YqA1 NA NA chrY 730532 ATTxTTT T C AFB1_1_ATCACG 7-E185-R-P_1 0 NOVEL COVERED 0.989288 0.996724 0.99254 81 1 0 11.857467 0.088235 0.02 1.179738 62 6 1770 178 60 60 0 0 TT 2.70715 9 0 252 0 KEEP - Usp9y NO AFB1_2 chr10 114657271 114657271 G C exonic Tbc1d15 nonsynonymous SNV NM_025706:c.C851G:p.T284S exonic Tbc1d15 nonsynonymous SNV uc007hax.2:c.C851G:p.T284S exonic ENSMUSG00000020130 nonsynonymous SNV ENSMUST00000020339:c.C851G:p.T284S 10qD2 NA NA chr10 114657271 CTAxTGA G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.982687 0.989542 0.993072 74 0 0 21.558308 0.163934 0.02 1.258554 51 10 1485 286 60 60 0 0 GG 3.308948 11 0 312 0 KEEP - Tbc1d15 NO AFB1_2 chr10 118305298 118305298 C A exonic Dyrk2 nonsynonymous SNV NM_001014390:c.G106T:p.G36W exonic Dyrk2 nonsynonymous SNV uc007hea.1:c.G106T:p.G36W exonic ENSMUSG00000028630 nonsynonymous SNV ENSMUST00000004281:c.G106T:p.G36W 10qD2 NA NA chr10 118305298 CCCxCGC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.980603 0.987943 0.99257 71 1 0 74.333195 0.5 0.02 1.16925 30 30 832 781 60 60 0 0 CC 2.404514 8 0 209 0 KEEP - Dyrk2 YES AFB1_2 chr10 127798132 127798132 G T exonic Cs stopgain SNV NM_026444:c.G1339T:p.E447X exonic Cs stopgain SNV uc007hmj.1:c.G1339T:p.E447X exonic ENSMUSG00000005683 stopgain SNV ENSMUST00000005826:c.G1339T:p.E447X 10qD3 NA NA chr10 127798132 CTGxAAA G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 121 0 0 19.249819 0.183673 0.02 -0.429726 40 9 1164 251 60 60 0 0 GG 20.111178 67 0 1873 0 KEEP + Cs YES AFB1_2 chr10 128063565 128063565 C T upstream Rps26 NA NA upstream Rps26 NA NA upstream ENSMUSG00000025362 NA NA 10qD3 NA NA chr10 128063565 CGGxGGC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 222 0 0 103.529338 0.387387 0.02 2.417791 68 43 1729 1152 60 60 0 0 CC 28.082921 94 0 2169 0 KEEP - Rps26 NO AFB1_2 chr10 18565212 18565212 G T exonic Perp nonsynonymous SNV NM_022032:c.G214T:p.A72S exonic Perp nonsynonymous SNV uc007emz.1:c.G214T:p.A72S exonic ENSMUSG00000019851 nonsynonymous SNV ENSMUST00000019998:c.G214T:p.A72S 10qA3 NA NA chr10 18565212 TACxGTG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036594 0.036766 0.995343 24 0 0 11.648712 0.666667 0.02 -0.052617 2 4 56 114 60 60 0 0 GG 4.209703 14 0 376 0 KEEP + Perp YES AFB1_2 chr10 23901436 23901436 C T intronic Stx7 NA NA intronic Stx7 NA NA intronic ENSMUSG00000019998 NA NA 10qA4 NA NA chr10 23901436 AGGxCGT C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.351366 0.353947 0.992708 32 2 0 9.175799 0.210526 0.02 -0.165647 15 4 412 115 60 60 0 0 CC 3.007582 10 0 275 0 KEEP + Stx7 NO AFB1_2 chr10 39667928 39667928 A C exonic G630090E17Rik synonymous SNV NM_001173500:c.T141G:p.G47G exonic G630090E17Rik synonymous SNV uc007ewi.1:c.T141G:p.G47G exonic ENSMUSG00000071335 synonymous SNV ENSMUST00000095749:c.T141G:p.G47G 10qB1 NA NA chr10 39667928 TGCxCCT A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 73 0 0 6.669767 0.392857 0.02 -0.272381 17 11 426 100 60 60 0 0 AA 8.132841 29 1 731 5 KEEP - G630090E17Rik NO AFB1_2 chr10 4997873 4997873 G T exonic Syne1 nonsynonymous SNV NM_153399:c.G3238T:p.V1080F exonic Syne1 nonsynonymous SNV uc007egp.1:c.G1762T:p.V588F exonic ENSMUSG00000019769 nonsynonymous SNV ENSMUST00000056571:c.G3268T:p.V1090F 10qA1 NA NA chr10 4997873 CCCxTCC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 60 0 0 41.944958 0.6 0.02 -0.219231 10 15 281 421 60 60 0 0 GG 8.709641 29 0 721 0 KEEP + Syne1 YES AFB1_2 chr10 51348210 51348210 T C exonic Gprc6a nonsynonymous SNV NM_153071:c.A343G:p.R115G exonic Gprc6a nonsynonymous SNV uc007fau.1:c.A343G:p.R115G exonic ENSMUSG00000019905 nonsynonymous SNV ENSMUST00000020062:c.A343G:p.R115G 10qB3 NA NA chr10 51348210 ACCxCAG T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.353901 0.353947 0.999869 43 0 0 24.484357 0.473684 0.02 -0.166631 10 9 290 259 60 60 0 0 TT 6.316602 21 0 585 0 KEEP - Gprc6a NO AFB1_2 chr10 51446575 51446575 G T exonic Rfx6 nonsynonymous SNV NM_177306:c.G1691T:p.R564L exonic Rfx6 nonsynonymous SNV uc011xdt.1:c.G881T:p.R294L exonic ENSMUSG00000019900 nonsynonymous SNV ENSMUST00000050455:c.G1691T:p.R564L 10qB3 NA NA chr10 51446575 TGCxCTC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 86 2 0 19.244058 0.285714 0.02 -0.24548 20 8 533 227 60 60 0 0 GG 13.445799 48 1 1171 8 KEEP + Rfx6 YES AFB1_2 chr10 59569243 59569243 G C exonic Spock2 nonsynonymous SNV NM_052994:c.G28C:p.A10P exonic Spock2 nonsynonymous SNV uc007fek.1:c.G28C:p.A10P exonic ENSMUSG00000058297 nonsynonymous SNV ENSMUST00000121820:c.G28C:p.A10P 10qB4 NA NA chr10 59569243 CTGxCTC G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 106 0 0 6.673676 0.214286 0.02 -0.12275 11 3 308 84 60 60 0 0 GG 23.451447 78 0 2101 0 KEEP + Spock2 NO AFB1_2 chr10 62779548 62779548 T G exonic Herc4 nonsynonymous SNV NM_026101:c.T2939G:p.L980R exonic Herc4 nonsynonymous SNV uc011xfl.1:c.T2576G:p.L859R exonic ENSMUSG00000020064 nonsynonymous SNV ENSMUST00000020258:c.T2939G:p.L980R 10qB4 NA NA chr10 62779548 TTCxATG T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999859 1 0.999859 308 3 0 46.587058 0.087719 0.02 6.648147 260 25 7347 714 60 60 0 0 TT 5.413151 18 0 487 0 KEEP + Herc4 NO AFB1_2 chr10 69413795 69413795 G T exonic Ank3 synonymous SNV NM_170730:c.G159T:p.P53P exonic Ank3 synonymous SNV uc007fnc.1:c.G159T:p.P53P exonic ENSMUSG00000069601 synonymous SNV ENSMUST00000047061:c.G159T:p.P53P 10qB5.3 NA NA chr10 69413795 CCCxGTG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 DBSNP COVERED 0.934492 0.934492 1 108 0 0 64.427742 0.5 0.02 -0.403327 23 23 608 673 60 60 0 0 GG 15.875368 53 0 1419 0 KEEP + Ank3 YES AFB1_2 chr10 79464960 79464960 A T intronic Abca7 NA NA intronic Abca7 NA NA intronic ENSMUSG00000035722 NA NA 10qC1 NA NA chr10 79464960 GTGxGAG A T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.322764 0.322807 0.999869 42 2 0 14.085608 0.333333 0.02 -0.15783 12 6 344 162 60 60 0 0 AA 6.316599 21 0 586 0 KEEP + Abca7 NO AFB1_2 chr10 79464961 79464961 G T intronic Abca7 NA NA intronic Abca7 NA NA intronic ENSMUSG00000035722 NA NA 10qC1 NA NA chr10 79464961 TGAxAGT G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.322764 0.322807 0.999869 43 2 0 14.286223 0.333333 0.02 -0.157858 12 6 355 164 60 60 0 0 GG 6.317609 21 0 605 0 KEEP + Abca7 YES AFB1_2 chr10 80828312 80828312 C A intronic 4930404N11Rik NA NA intronic 4930404N11Rik NA NA UTR3 ENSMUSG00000034854 NA NA 10qC1 NA NA chr10 80828312 CACxTGT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.882244 0.888875 0.99254 50 1 0 9.789044 0.121951 0.02 -0.359564 36 5 1037 140 60 60 0 0 CC 2.686814 9 0 229 0 KEEP - 4930404N11Rik YES AFB1_2 chr11 101078398 101078398 T G exonic Ezh1 nonsynonymous SNV NM_007970:c.A166C:p.T56P exonic Ezh1 nonsynonymous SNV uc007lnw.2:c.A157C:p.T53P exonic ENSMUSG00000006920 nonsynonymous SNV ENSMUST00000100417:c.A157C:p.T53P 11qD NA NA chr11 101078398 GGGxTTT T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 118 0 0 63.504349 0.373134 0.02 1.107671 42 25 1189 708 60 60 0 0 TT 13.834322 46 0 1253 0 KEEP - Ezh1 NO AFB1_2 chr11 106364822 106364822 A G UTR3 Tex2 NA NA UTR3 Tex2 NA NA UTR3 ENSMUSG00000040548 NA NA 11qE1 NA NA chr11 106364822 GGAxAGG A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.712085 0.717315 0.992708 41 0 0 13.751068 0.193548 0.02 -0.271807 25 6 700 175 60 60 0 0 AA 3.007943 10 0 279 0 KEEP - Tex2 NO AFB1_2 chr11 116060050 116060050 G A UTR5 Acox1 NA NA UTR5 Acox1 NA NA UTR5 ENSMUSG00000020777 NA NA 11qE2 NA NA chr11 116060050 GGTxGCG G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999107 0.99911 0.999997 109 1 0 7.811118 0.063291 0.02 1.002568 74 5 2093 135 60 60 0 0 GG 8.721728 29 0 796 0 KEEP - Acox1 NO AFB1_2 chr11 116458304 116458304 C G exonic Aanat nonsynonymous SNV NM_009591:c.C514G:p.Q172E exonic Aanat nonsynonymous SNV uc007mlo.2:c.C514G:p.Q172E exonic ENSMUSG00000020804 nonsynonymous SNV ENSMUST00000153476:c.C514G:p.Q172E 11qE2 NA NA chr11 116458304 TTCxAGG C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 51 0 0 17.351338 1 0.02 -0.052566 0 6 0 145 0 60 0 0 CC 11.130703 37 0 1060 0 KEEP + Aanat NO AFB1_2 chr11 117631893 117631893 T G intronic Tmc6 NA NA intronic Tmc6 NA NA intronic ENSMUSG00000025572 NA NA 11qE2 NA NA chr11 117631893 ATCxTCC T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019979 0.019982 0.999869 25 0 0 7.951185 0.75 0.02 -0.035062 1 3 29 75 60 60 0 0 TT 6.313479 21 0 564 0 KEEP - Tmc6 NO AFB1_2 chr11 121082815 121082815 G T exonic Hexdc nonsynonymous SNV NM_001146073:c.G1383T:p.R461S exonic Hexdc nonsynonymous SNV uc007mvm.2:c.G1383T:p.R461S exonic ENSMUSG00000039307 nonsynonymous SNV ENSMUST00000038831:c.G1383T:p.R461S 11qE2 NA NA chr11 121082815 CAGxTAT G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 56 0 0 19.497908 0.583333 0.02 -0.105236 5 7 145 197 60 60 0 0 GG 8.95338 37 1 1007 20 KEEP + Hexdc YES AFB1_2 chr11 19920778 19920778 G T intronic Spred2 NA NA intronic Spred2 NA NA intronic ENSMUSG00000045671 NA NA 11qA3.1 NA NA chr11 19920778 CTGxTTT G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.984023 0.984161 0.999859 78 0 0 20.599002 0.172414 0.02 1.186607 48 10 1358 274 60 60 0 0 GG 5.414048 18 0 502 0 KEEP + Spred2 YES AFB1_2 chr11 3427608 3427608 A C intronic Smtn NA NA exonic Smtn synonymous SNV uc007hte.2:c.T252G:p.G84G exonic ENSMUSG00000020439 synonymous SNV ENSMUST00000020718:c.T222G:p.G74G 11qA1 NA NA chr11 3427608 AACxCCC A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 76 0 0 6.937896 0.264706 0.02 -0.294295 25 9 616 112 60 60 0 0 AA 8.593273 34 2 854 14 KEEP - Smtn NO AFB1_2 chr11 50211103 50211103 C A intronic Rufy1 NA NA intronic Rufy1 NA NA intronic ENSMUSG00000020375 NA NA 11qB1.3 NA NA chr11 50211103 GGGxCCA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999999 53 0 0 38.815502 1 0.02 -0.105219 0 12 0 331 0 60 0 0 CC 10.828259 36 0 1000 0 KEEP - Rufy1 YES AFB1_2 chr11 53076433 53076433 T C exonic Hspa4 synonymous SNV NM_008300:c.A2112G:p.L704L exonic Hspa4 synonymous SNV uc007ivq.1:c.A2112G:p.L704L exonic ENSMUSG00000020361 synonymous SNV ENSMUST00000020630:c.A2112G:p.L704L 11qB1.3 NA NA chr11 53076433 CCCxAGT T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.996593 0.996724 0.999869 94 0 0 100.910137 0.514286 0.02 1.179619 34 36 985 1048 60 60 0 0 TT 6.015918 20 0 560 0 KEEP - Hspa4 NO AFB1_2 chr11 55096562 55096562 C A exonic Fat2 nonsynonymous SNV NM_001029988:c.G6826T:p.V2276L exonic Fat2 nonsynonymous SNV uc007izf.1:c.G6826T:p.V2276L exonic ENSMUSG00000055333 nonsynonymous SNV ENSMUST00000108864:c.G6826T:p.V2276L 11qB1.3 NA NA chr11 55096562 ATAxCAA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 52 1 0 16.948745 0.291667 0.02 -0.21047 17 7 482 199 60 60 0 0 CC 7.519124 25 0 687 0 KEEP - Fat2 YES AFB1_2 chr11 55854260 55854260 C A exonic Nmur2 synonymous SNV NM_153079:c.G126T:p.V42V exonic Nmur2 synonymous SNV uc007izq.1:c.G126T:p.V42V exonic ENSMUSG00000037393 synonymous SNV ENSMUST00000037682:c.G126T:p.V42V 11qB1.3 NA NA chr11 55854260 GACxACA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 61 0 0 53.545627 0.782609 0.02 -0.201662 5 18 145 502 60 60 0 0 CC 9.325222 31 0 880 0 KEEP - Nmur2 YES AFB1_2 chr11 57861343 57861343 T C exonic Larp1 synonymous SNV NM_028451:c.T1449C:p.V483V exonic Larp1 synonymous SNV uc007jah.2:c.T1449C:p.V483V exonic ENSMUSG00000037331 synonymous SNV ENSMUST00000071487:c.T1449C:p.V483V 11qB1.3 NA NA chr11 57861343 TGTxCCC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 103 2 0 6.378361 0.275862 0.02 -0.25159 21 8 543 100 60 60 1 0 TT 13.68249 46 0 1176 0 KEEP + Larp1 NO AFB1_2 chr11 65907520 65907520 C G exonic Dnah9 nonsynonymous SNV NM_001099633:c.G3724C:p.E1242Q exonic Dnahc9 nonsynonymous SNV uc007jlg.1:c.G3724C:p.E1242Q exonic ENSMUSG00000056752 nonsynonymous SNV ENSMUST00000080665:c.G3724C:p.E1242Q 11qB3 NA NA chr11 65907520 CCTxTTT C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 66 0 0 19.36235 0.266667 0.02 -0.263109 22 8 647 231 60 60 0 0 CC 8.724273 29 0 837 0 KEEP - Dnah9 NO AFB1_2 chr11 67002907 67002907 G C exonic Myh2 synonymous SNV NM_001039545:c.G3444C:p.R1148R exonic Myh2 synonymous SNV uc007jmd.2:c.G3444C:p.R1148R exonic ENSMUSG00000033196 synonymous SNV ENSMUST00000018640:c.G3444C:p.R1148R 11qB3 NA NA chr11 67002907 CCGxGAA G C AFB1_2_TTAGGC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 DBSNP UNCOVERED 0 0.229173 0 41 0 9 33.754071 0.8 0.02 -0.131493 3 12 86 313 36 36 0 0 GG 5.712416 19 0 539 0 KEEP + Myh2 NO AFB1_2 chr11 70969598 70969598 G A exonic Nlrp1b synonymous SNV NM_001162414:c.C3438T:p.A1146A exonic Nlrp1b synonymous SNV uc007jxs.1:c.C3438T:p.A1146A exonic ENSMUSG00000070390 synonymous SNV ENSMUST00000094046:c.C3429T:p.A1143A 11qB4 NA NA chr11 70969598 GCAxGCT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.818429 0.818465 0.999957 64 1 0 10.489918 0.138889 0.02 -0.315706 31 5 889 144 60 25 0 0 GG 7.821195 26 0 737 0 KEEP - Nlrp1b NO AFB1_2 chr11 77280843 77280843 C A exonic Coro6 nonsynonymous SNV NM_139128:c.C751A:p.P251T exonic Coro6 nonsynonymous SNV uc007kgs.1:c.C751A:p.P251T exonic ENSMUSG00000020836 nonsynonymous SNV ENSMUST00000021190:c.C751A:p.P251T 11qB5 NA NA chr11 77280843 GACxCGG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.902771 0.909069 0.993072 54 0 0 9.180761 0.116279 0.02 -0.377099 38 5 1094 135 60 60 0 0 CC 3.308292 11 0 303 0 KEEP + Coro6 YES AFB1_2 chr11 78080691 78080691 A T exonic 2610507B11Rik synonymous SNV NM_001002004:c.A1176T:p.L392L exonic 2610507B11Rik synonymous SNV uc007kir.2:c.A1176T:p.L392L exonic ENSMUSG00000010277 synonymous SNV ENSMUST00000010421:c.A1176T:p.L392L 11qB5 NA NA chr11 78080691 GCTxGCA A T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.423459 0.423478 0.999957 52 0 0 11.802324 0.25 0.02 -0.184161 15 5 429 143 60 60 0 0 AA 7.820602 26 0 727 0 KEEP + 2610507B11Rik NO AFB1_2 chr11 80269836 80269836 T C exonic Psmd11 synonymous SNV NM_178616:c.T543C:p.S181S exonic Psmd11 synonymous SNV uc007kme.1:c.T543C:p.S181S exonic ENSMUSG00000017428 synonymous SNV ENSMUST00000168244:c.T243C:p.S81S 11qB5 NA NA chr11 80269836 GAGxAAT T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.607941 0.612407 0.992708 38 0 0 14.153402 0.222222 0.02 -0.236771 21 6 584 175 60 60 0 0 TT 3.007222 10 0 268 0 KEEP + Psmd11 NO AFB1_2 chr11 82849261 82849261 G C ncRNA_exonic Slfn10-ps NA NA exonic Slfn10-ps nonsynonymous SNV uc007koe.1:c.C234G:p.N78K exonic ENSMUSG00000072621 nonsynonymous SNV ENSMUST00000092839:c.C240G:p.N80K 11qC "Score=0.910566;Name=No.13020,chr11:82825927" NA chr11 82849261 AACxTTA G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 108 0 3 10.233859 0.119048 0.02 -0.368136 37 5 947 145 60 23 0 0 GG 14.947177 60 1 1453 29 KEEP - Slfn10-ps NO AFB1_2 chr11 87628667 87628667 T C exonic Lpo synonymous SNV NM_080420:c.A831G:p.R277R exonic Lpo synonymous SNV uc007kus.2:c.A831G:p.R277R exonic ENSMUSG00000009356 synonymous SNV ENSMUST00000103177:c.A831G:p.R277R 11qC NA NA chr11 87628667 AGCxCTG T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 54 1 0 79.226533 1 0.02 -0.210407 0 24 0 678 0 60 0 0 TT 8.405367 28 0 751 0 KEEP - Lpo NO AFB1_2 chr11 87682978 87682978 A T exonic Epx synonymous SNV NM_007946:c.T1311A:p.P437P exonic Epx synonymous SNV uc007kuw.1:c.T1311A:p.P437P exonic ENSMUSG00000052234 synonymous SNV ENSMUST00000049768:c.T1311A:p.P437P 11qC NA NA chr11 87682978 CAGxGGC A T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 54 0 0 30.01701 0.769231 0.02 -0.114007 3 10 89 283 60 60 0 0 AA 11.430317 38 0 1065 0 KEEP - Epx NO AFB1_2 chr11 88791624 88791624 C A exonic Scpep1 nonsynonymous SNV NM_029023:c.G1030T:p.D344Y exonic Scpep1 nonsynonymous SNV uc011yci.1:c.G874T:p.D292Y exonic ENSMUSG00000000278 nonsynonymous SNV ENSMUST00000100630:c.G874T:p.D292Y 11qC NA NA chr11 88791624 AGTxCCC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 46 0 0 37.454665 0.923077 0.02 -0.113006 1 12 6 329 60 60 0 0 CC 9.324932 31 0 872 0 KEEP - Scpep1 YES AFB1_2 chr11 95866996 95866996 G C UTR5 Igf2bp1 NA NA UTR5 Igf2bp1 NA NA UTR5 ENSMUSG00000013415 NA NA 11qD NA NA chr11 95866996 CGGxCGG G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999988 1 0.999988 218 2 0 194.307275 0.41573 0.02 3.490257 104 74 2987 2115 60 60 0 0 GG 8.117335 27 0 713 0 KEEP - Igf2bp1 NO AFB1_2 chr11 96148014 96148014 C T UTR5 Hoxb7 NA NA UTR5 Hoxb7 NA NA UTR5 ENSMUSG00000038721 NA NA 11qD NA NA chr11 96148014 CGTxCCC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 275 1 0 29.759024 0.084656 0.02 3.482764 173 16 5040 459 60 60 0 0 CC 18.649751 62 0 1753 0 KEEP + Hoxb7 NO AFB1_2 chr12 102025795 102025795 C A intronic 9030617O03Rik NA NA intronic 9030617O03Rik NA NA intronic ENSMUSG00000021185 NA NA 12qE NA NA chr12 102025795 ATTxGTG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 137 1 0 8.563882 0.153846 0.02 -0.227971 22 4 611 115 60 60 0 0 CC 29.166373 97 0 2650 0 KEEP + 9030617O03Rik YES AFB1_2 chr12 102684249 102684249 A G exonic Catsperb synonymous SNV NM_173023:c.A384G:p.V128V exonic Catsperb synonymous SNV uc007otl.2:c.A384G:p.V128V exonic ENSMUSG00000047014 synonymous SNV ENSMUST00000055156:c.A384G:p.V128V 12qE NA NA chr12 102684249 TGTxGAA A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 80 2 0 10.303938 0.128205 0.02 -0.342019 34 5 969 144 60 60 0 0 AA 9.623653 32 0 870 0 KEEP + Catsperb NO AFB1_2 chr12 105389684 105389684 G A exonic Serpina3c synonymous SNV NM_008458:c.C604T:p.L202L exonic Serpina3c synonymous SNV uc007owv.1:c.C604T:p.L202L exonic ENSMUSG00000066361 synonymous SNV ENSMUST00000085050:c.C604T:p.L202L 12qE NA NA chr12 105389684 TCAxTGT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 245 2 1 7.970123 0.125 0.02 -0.349823 35 5 1022 120 60 29 0 0 GG 52.036954 173 0 4856 0 KEEP - Serpina3c NO AFB1_2 chr12 3426843 3426843 G T upstream "1110002L01Rik,Asxl2" NA NA upstream "1110002L01Rik,Asxl2" NA NA upstream "ENSMUSG00000037486,ENSMUSG00000071456" NA NA 12qA1.1 NA NA chr12 3426843 CGCxGCC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 97 2 0 14.191903 0.137255 0.02 1.33792 44 7 1060 197 60 60 0 0 GG 12.621356 42 0 1080 0 KEEP NA 1110002L01Rik YES AFB1_2 chr12 58643429 58643429 G T exonic Foxa1 nonsynonymous SNV NM_008259:c.C991A:p.L331M exonic Foxa1 nonsynonymous SNV uc007nps.1:c.C991A:p.L331M exonic ENSMUSG00000035451 nonsynonymous SNV ENSMUST00000044380:c.C991A:p.L331M 12qC1 NA NA chr12 58643429 CCAxAGT G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999815 0.999956 0.999859 120 1 0 7.728892 0.05102 0.02 0.737884 93 5 2711 139 60 60 0 0 GG 5.414462 18 0 506 0 KEEP - Foxa1 YES AFB1_2 chr12 70298592 70298592 G A exonic Dnaaf2 synonymous SNV NM_027269:c.C681T:p.Y227Y exonic 1110034A24Rik synonymous SNV uc007nrt.1:c.C681T:p.Y227Y exonic ENSMUSG00000020973 synonymous SNV ENSMUST00000021356:c.C681T:p.Y227Y 12qC2 NA NA chr12 70298592 GCGxTAT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 123 0 0 17.686842 0.136364 0.02 1.018566 57 9 1618 248 60 60 0 0 GG 14.432763 48 0 1287 0 KEEP - Dnaaf2 NO AFB1_2 chr12 87049609 87049609 G T exonic Batf synonymous SNV NM_016767:c.G285T:p.V95V exonic Batf synonymous SNV uc007ohd.1:c.G285T:p.V95V exonic ENSMUSG00000034266 synonymous SNV ENSMUST00000040536:c.G285T:p.V95V 12qD2 NA NA chr12 87049609 CGTxCTG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099709 0.099721 0.999879 38 0 0 7.378527 0.3 0.02 -0.087702 7 3 205 86 60 60 0 0 GG 6.617709 22 0 620 0 KEEP + Batf YES AFB1_2 chr12 88329149 88329149 G T exonic Zdhhc22 nonsynonymous SNV NM_001080943:c.C478A:p.L160M exonic Zdhhc22 nonsynonymous SNV uc007oie.1:c.C478A:p.L160M exonic ENSMUSG00000048483 nonsynonymous SNV ENSMUST00000095521:c.C478A:p.L160M 12qD2 NA NA chr12 88329149 CCAxGGG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 61 0 0 6.782225 0.230769 0.02 -0.114011 10 3 292 84 60 60 0 0 GG 13.221719 44 0 1214 0 KEEP - Zdhhc22 YES AFB1_2 chr12 88653712 88653712 G A exonic Sptlc2 nonsynonymous SNV NM_011479:c.C1499T:p.P500L exonic Sptlc2 nonsynonymous SNV uc007oiu.1:c.C140T:p.P47L exonic ENSMUSG00000021036 nonsynonymous SNV ENSMUST00000021424:c.C1499T:p.P500L 12qD2 NA NA chr12 88653712 ATCxGGG G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 47 0 0 19.842653 0.538462 0.02 -0.113998 6 7 164 204 60 60 0 0 GG 8.722086 29 0 799 0 KEEP - Sptlc2 NO AFB1_2 chr13 108679694 108679694 C A exonic Zswim6 synonymous SNV NM_145456:c.G549T:p.V183V exonic Zswim6 synonymous SNV uc007rup.2:c.G549T:p.V183V exonic ENSMUSG00000032846 synonymous SNV ENSMUST00000105097:c.G549T:p.V183V 13qD2.1 NA NA chr13 108679694 CCCxACC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.260933 0.260965 0.999879 40 0 0 18.737618 0.466667 0.02 -0.140314 8 7 228 199 60 60 0 0 CC 6.601556 22 0 607 0 KEEP - Zswim6 YES AFB1_2 chr13 115764296 115764296 C T intronic Itga1 NA NA intronic Itga1 NA NA intronic ENSMUSG00000042284 NA NA 13qD2.2 NA NA chr13 115764296 TTTxTTA C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 93 0 0 8.898105 0.428571 0.02 -0.137232 8 6 232 103 60 60 0 0 CC 18.350097 61 0 1749 0 KEEP - Itga1 NO AFB1_2 chr13 21808315 21808315 G T exonic Hist1h2ai nonsynonymous SNV NM_178182:c.G25T:p.G9C exonic Hist1h2ai nonsynonymous SNV uc007prb.1:c.G25T:p.G9C exonic ENSMUSG00000071516 nonsynonymous SNV ENSMUST00000070124:c.G25T:p.G9C 13qA3.1 NA NA chr13 21808315 GGCxGCA G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.996593 0.996724 0.999869 97 1 0 31.876296 0.2 0.02 1.179936 56 14 1434 404 60 60 0 0 GG 6.299594 21 0 494 0 KEEP + Hist1h2ai YES AFB1_2 chr13 21827262 21827262 G C exonic Hist1h4j nonsynonymous SNV NM_178210:c.G298C:p.G100R exonic Hist1h4j nonsynonymous SNV uc007pre.1:c.G298C:p.G100R exonic ENSMUSG00000067455 nonsynonymous SNV ENSMUST00000087714:c.G298C:p.G100R 13qA3.1 NA NA chr13 21827262 TACxGGT G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 127 0 4 25.488387 0.213115 0.02 1.160573 48 13 1245 330 60 60 0 0 GG 16.837055 56 0 1492 0 KEEP + Hist1h4j NO AFB1_2 chr13 22134583 22134583 G A exonic Hist1h2ag nonsynonymous SNV NM_178186:c.C214T:p.R72C exonic Hist1h2ag nonsynonymous SNV uc007psd.1:c.C214T:p.R72C exonic ENSMUSG00000069301 nonsynonymous SNV ENSMUST00000091741:c.C214T:p.R72C 13qA3.1 "Score=0.903828;Name=No.32662,chr13:21901658,No.32664,chr13:21924951" NA chr13 22134583 CGCxGGC G A AFB1_2_TTAGGC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.490234 0.490544 0.999366 90 1 40 12.731027 0.26087 0.02 -0.201634 17 6 461 156 29 36 0 0 GG 11.73014 39 0 1108 0 KEEP - Hist1h2ag NO AFB1_2 chr13 24082948 24082948 C A UTR5 Scgn NA NA UTR5 Scgn NA NA UTR5 ENSMUSG00000021337 NA NA 13qA3.1 NA NA chr13 24082948 CTTxGGT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 72 0 0 38.282864 0.722222 0.02 -0.15782 5 13 124 367 60 60 0 0 CC 13.147033 49 1 1138 14 KEEP - Scgn YES AFB1_2 chr13 34390826 34390826 C A intronic Slc22a23 NA NA intronic Slc22a23 NA NA intronic ENSMUSG00000038267 NA NA 13qA3.3 NA NA chr13 34390826 GGGxTGA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.99986 37 0 0 18.937636 0.466667 0.02 -0.13155 8 7 231 201 60 60 0 0 CC 5.713016 19 0 514 0 KEEP - Slc22a23 YES AFB1_2 chr13 38438154 38438154 C A exonic Bmp6 nonsynonymous SNV NM_007556:c.C353A:p.A118D exonic Bmp6 nonsynonymous SNV uc007qdp.1:c.C353A:p.A118D exonic ENSMUSG00000039004 nonsynonymous SNV ENSMUST00000171970:c.C353A:p.A118D 13qA3.3 NA NA chr13 38438154 CGGxCCG C A AFB1_2_TTAGGC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.795757 0.800245 0.994391 48 0 0 51.088419 0.575758 0.02 -0.298146 14 19 402 518 60 60 0 0 CC 3.906656 13 0 350 0 KEEP + Bmp6 YES AFB1_2 chr13 47183987 47183987 A C intronic Dek NA NA intronic Dek NA NA intronic ENSMUSG00000021377 NA NA 13qA5 NA NA chr13 47183987 GCTxGAA A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.668463 0.668523 0.999909 60 0 0 22.781355 0.37931 0.02 -0.254231 18 11 524 259 60 60 0 0 AA 7.217961 24 0 658 0 KEEP - Dek NO AFB1_2 chr13 54832824 54832824 T C intronic Cdhr2 NA NA intronic Cdhr2 NA NA intronic ENSMUSG00000034918 NA NA 13qB1 NA NA chr13 54832824 CTTxCCC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139813 0.139832 0.999863 33 0 0 10.059292 0.777778 0.02 -0.100966 2 7 39 90 60 60 0 0 TT 5.942618 20 0 489 0 KEEP + Cdhr2 NO AFB1_2 chr13 56731171 56731171 A C exonic Tgfbi nonsynonymous SNV NM_009369:c.A1106C:p.E369A exonic Tgfbi nonsynonymous SNV uc011zae.1:c.A1106C:p.E369A exonic ENSMUSG00000035493 nonsynonymous SNV ENSMUST00000045173:c.A1106C:p.E369A 13qB1 NA NA chr13 56731171 ATGxGCT A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.489481 0.490544 0.997832 40 0 0 13.030362 0.26087 0.02 -0.201682 17 6 487 159 60 60 0 0 AA 4.812752 16 0 448 0 KEEP + Tgfbi NO AFB1_2 chr13 58394416 58394416 T G exonic Kif27 nonsynonymous SNV NM_175214:c.A3545C:p.Q1182P exonic Kif27 nonsynonymous SNV uc011zao.1:c.A2156C:p.Q719P exonic ENSMUSG00000060176 nonsynonymous SNV ENSMUST00000043605:c.A3545C:p.Q1182P 13qB1 NA NA chr13 58394416 TGCxGCA T G AFB1_2_TTAGGC 7-E185-R-P_1 0 DBSNP COVERED 0.351787 0.353947 0.993897 48 0 0 7.464332 0.210526 0.02 -0.166596 15 4 432 98 60 60 0 0 TT 7.817263 26 0 701 0 KEEP - Kif27 NO AFB1_2 chr13 58501646 58501646 T A intronic Hnrnpk NA NA intronic "Hnrnpk,Hnrpk" NA NA intronic ENSMUSG00000021546 NA NA 13qB1 NA NA chr13 58501646 AAGxAAC T A AFB1_2_TTAGGC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.99254 1 0.99254 141 2 0 77.118282 0.25 0.02 2.233061 99 33 2696 936 60 60 0 0 TT 2.706585 9 0 243 0 KEEP - Hnrnpk NO AFB1_2 chr13 74175608 74175608 C A UTR3 Cep72 NA NA UTR3 Cep72 NA NA UTR3 ENSMUSG00000021572 NA NA 13qC1 NA NA chr13 74175608 TAGxAGC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.196303 0.196312 0.999957 45 0 0 9.571231 0.285714 0.02 -0.12278 10 4 290 113 60 60 0 0 CC 7.808834 26 0 716 0 KEEP - Cep72 YES AFB1_2 chr14 27852379 27852379 C A exonic Il17rd synonymous SNV NM_134437:c.C90A:p.S30S exonic "Il17rd,Sef" synonymous SNV uc007stk.1:c.C90A:p.S30S exonic ENSMUSG00000040717 synonymous SNV ENSMUST00000035336:c.C90A:p.S30S 14qA3 NA NA chr14 27852379 CTCxGGC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 56 0 0 23.135124 1 0.02 -0.061385 0 7 0 198 0 60 0 0 CC 12.837299 43 0 953 0 KEEP + Il17rd YES AFB1_2 chr14 30795861 30795861 T G exonic Actr8 nonsynonymous SNV NM_027493:c.T200G:p.L67R exonic Actr8 nonsynonymous SNV uc007sum.2:c.T200G:p.L67R exonic ENSMUSG00000015971 nonsynonymous SNV ENSMUST00000016115:c.T200G:p.L67R 14qB NA NA chr14 30795861 CACxTCC T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 96 0 0 8.569033 0.222222 0.02 -0.157849 14 4 403 108 60 60 0 0 TT 18.949747 63 0 1758 0 KEEP + Actr8 NO AFB1_2 chr14 31981742 31981742 C A UTR5 Stab1 NA NA UTR5 Stab1 NA NA UTR5 ENSMUSG00000042286 NA NA 14qB NA NA chr14 31981742 AGGxAGC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.99986 45 0 0 25.964228 0.4 0.02 -0.219207 15 10 425 285 60 60 0 0 CC 5.711268 19 0 532 0 KEEP - Stab1 YES AFB1_2 chr14 41988887 41988887 A T intronic Sftpd NA NA intronic Sftpd NA NA intronic ENSMUSG00000021795 NA NA 14qB NA NA chr14 41988887 TGCxGGT A T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162452 0.162467 0.999909 41 0 0 23.453419 0.615385 0.02 -0.114014 5 8 145 234 60 60 0 0 AA 7.218194 24 0 656 0 KEEP - Sftpd NO AFB1_2 chr14 48740846 48740846 C T exonic Peli2 synonymous SNV NM_033602:c.C15T:p.G5G exonic Peli2 synonymous SNV uc007tjh.1:c.C15T:p.G5G exonic ENSMUSG00000021846 synonymous SNV ENSMUST00000073150:c.C15T:p.G5G 14qC1 NA NA chr14 48740846 GGGxCAG C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.993634 1 0.993634 170 2 0 109.872216 0.326531 0.02 2.101796 99 48 2759 1273 60 60 0 0 CC 3.605894 12 0 313 0 KEEP + Peli2 NO AFB1_2 chr14 56402390 56402390 C T exonic Adcy4 synonymous SNV NM_080435:c.G126A:p.V42V exonic Adcy4 synonymous SNV uc007uat.1:c.G126A:p.V42V exonic ENSMUSG00000022220 synonymous SNV ENSMUST00000002398:c.G126A:p.V42V 14qC3 NA NA chr14 56402390 TGCxACC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 103 0 0 9.069057 0.222222 0.02 -0.157841 14 4 389 113 60 60 0 0 CC 21.640543 72 0 2001 0 KEEP - Adcy4 NO AFB1_2 chr14 69262297 69262297 G T intronic Adam28 NA NA intronic Adam28 NA NA intronic ENSMUSG00000014725 NA NA 14qD2 NA NA chr14 69262297 AGCxCTC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 80 1 0 11.649584 0.666667 0.02 -0.052608 2 4 52 114 60 60 0 0 GG 18.028323 60 0 1496 0 KEEP - Adam28 YES AFB1_2 chr15 100143469 100143469 T G exonic Mettl7a1 synonymous SNV NM_027334:c.T543G:p.S181S exonic Mettl7a1 synonymous SNV uc007xqv.1:c.T543G:p.S181S exonic ENSMUSG00000054619 synonymous SNV ENSMUST00000067752:c.T543G:p.S181S 15qF1 "Score=0.932893;Name=No.57825,chr15:100165334" NA chr15 100143469 GTCxACC T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 183 2 0 11.971025 0.07619 0.02 2.417226 97 8 2710 204 60 60 0 0 TT 17.439396 58 0 1550 0 KEEP + Mettl7a1 NO AFB1_2 chr15 100143671 100143671 G C UTR3 Mettl7a1 NA NA UTR3 Mettl7a1 NA NA UTR3 ENSMUSG00000054619 NA NA 15qF1 "Score=0.932893;Name=No.57825,chr15:100165334" NA chr15 100143671 GTGxTGG G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 116 2 2 14.701207 0.12963 0.02 1.29369 47 7 1307 204 60 29 0 0 GG 14.415019 48 0 1292 0 KEEP + Mettl7a1 NO AFB1_2 chr15 101320092 101320092 C T exonic 5430421N21Rik synonymous SNV NM_001201323:c.G495A:p.E165E exonic 5430421N21Rik synonymous SNV uc007xtj.2:c.G495A:p.E165E exonic ENSMUSG00000067613 synonymous SNV ENSMUST00000023718:c.G495A:p.E165E 15qF2 NA NA chr15 101320092 ACAxTCA C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 147 9 1 10.518719 0.166667 0.02 -0.263081 25 5 705 140 60 37 0 0 CC 25.863074 86 0 2362 0 KEEP - 5430421N21Rik NO AFB1_2 chr15 102320247 102320247 A C intronic Pcbp2 NA NA intronic Pcbp2 NA NA intronic ENSMUSG00000056851 NA NA 15qF3 NA NA chr15 102320247 TGTxATT A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 51 0 0 6.892275 0.176471 0.02 -0.14909 14 3 401 89 60 60 0 0 AA 7.217559 24 0 657 0 KEEP + Pcbp2 NO AFB1_2 chr15 25661758 25661758 G T exonic Myo10 stopgain SNV NM_019472:c.G964T:p.E322X exonic Myo10 stopgain SNV uc007vjb.1:c.G865T:p.E289X exonic ENSMUSG00000022272 stopgain SNV ENSMUST00000137601:c.G865T:p.E289X 15qB1 NA NA chr15 25661758 GAGxAAG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 160 1 0 8.270452 0.285714 0.02 -0.122749 10 4 291 100 60 60 0 0 GG 34.824382 116 0 3254 0 KEEP + Myo10 YES AFB1_2 chr15 39658448 39658448 C A exonic Dpys nonsynonymous SNV NM_001164466:c.G1054T:p.V352F exonic Dpys nonsynonymous SNV uc007vok.2:c.G1054T:p.V352F exonic ENSMUSG00000022304 nonsynonymous SNV ENSMUST00000022915:c.G1054T:p.V352F 15qB3.1 NA NA chr15 39658448 CGAxACC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 255 0 0 26.634956 0.434783 0.02 -0.210378 13 10 356 287 60 60 0 0 CC 53.535691 178 0 5021 0 KEEP - Dpys YES AFB1_2 chr15 54894507 54894507 G C intronic Taf2 NA NA intronic Taf2 NA NA intronic ENSMUSG00000037343 NA NA 15qD1 NA NA chr15 54894507 CTAxAGA G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.992627 0.999919 0.992708 106 2 0 23.688107 0.126316 0.02 0.764159 83 12 2451 336 60 60 0 0 GG 3.008324 10 0 287 0 KEEP - Taf2 NO AFB1_2 chr15 77319602 77319602 G T UTR3 Apol10a NA NA UTR3 Apol10a NA NA UTR3 ENSMUSG00000050982 NA NA 15qE1 "Score=0.96243;Name=No.57807,chr15:77429169" NA chr15 77319602 GACxCCC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 111 0 3 74.195495 0.54 0.02 -0.43831 23 27 595 763 60 60 0 0 GG 15.014378 50 0 1320 0 KEEP + Apol10a YES AFB1_2 chr15 78632173 78632173 C A exonic Card10 nonsynonymous SNV NM_130859:c.G410T:p.R137L exonic Card10 nonsynonymous SNV uc007wrj.1:c.G263T:p.R88L exonic ENSMUSG00000033170 nonsynonymous SNV ENSMUST00000170584:c.G263T:p.R88L 15qE1 NA NA chr15 78632173 CCCxGGC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.291975 0.292001 0.999909 43 1 0 9.582892 0.235294 0.02 -0.148986 13 4 315 117 60 60 0 0 CC 7.161381 24 0 555 0 KEEP - Card10 YES AFB1_2 chr15 79988205 79988205 T G exonic Tab1 nonsynonymous SNV NM_025609:c.T1093G:p.F365V exonic Tab1 nonsynonymous SNV uc007wve.1:c.T1093G:p.F365V exonic ENSMUSG00000022414 nonsynonymous SNV ENSMUST00000023050:c.T1093G:p.F365V 15qE1 NA NA chr15 79988205 AACxTTG T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 173 3 0 66.512693 0.490909 0.02 1.115123 28 27 808 702 60 60 0 0 TT 29.176354 97 0 2711 0 KEEP + Tab1 NO AFB1_2 chr15 84765812 84765812 G T exonic Nup50 nonsynonymous SNV NM_016714:c.G856T:p.G286C exonic Nup50 nonsynonymous SNV uc007xcq.1:c.G856T:p.G286C exonic ENSMUSG00000016619 nonsynonymous SNV ENSMUST00000165443:c.G856T:p.G286C 15qE2 NA NA chr15 84765812 TCTxGCT G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.92654 0.92664 0.999892 70 0 0 46.246467 0.4 0.02 -0.394218 27 18 758 508 60 60 0 0 GG 6.918411 23 0 648 0 KEEP + Nup50 YES AFB1_2 chr15 89184340 89184340 T C exonic Lmf2 nonsynonymous SNV NM_178919:c.A691G:p.T231A exonic Lmf2 nonsynonymous SNV uc007xge.2:c.A160G:p.T54A exonic ENSMUSG00000022614 nonsynonymous SNV ENSMUST00000023283:c.A691G:p.T231A 15qE3 NA NA chr15 89184340 AGGxGGC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 115 0 0 26.450263 0.4 0.02 -0.262996 18 12 500 295 60 60 0 0 TT 19.839615 66 0 1750 0 KEEP - Lmf2 NO AFB1_2 chr15 95742726 95742726 C T intronic Ano6 NA NA intronic Ano6 NA NA intronic ENSMUSG00000064210 NA NA 15qF1 NA NA chr15 95742726 TTTxTTT C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 222 0 0 37.630013 0.107955 0.02 3.542075 157 19 4633 547 60 60 0 0 CC 11.430832 38 0 1084 0 KEEP + Ano6 NO AFB1_2 chr15 98681385 98681385 A G exonic Kmt2d nonsynonymous SNV NM_001033276:c.T8488C:p.F2830L exonic Mll2 nonsynonymous SNV uc007xoc.2:c.T8488C:p.F2830L exonic ENSMUSG00000048154 nonsynonymous SNV ENSMUST00000023741:c.T8488C:p.F2830L 15qF1 NA NA chr15 98681385 GGAxCCG A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 23 0 0 7.201553 0.25 0.02 -0.105226 9 3 246 87 60 60 0 0 AA 3.300624 11 0 280 0 KEEP - Kmt2d NO AFB1_2 chr15 98685725 98685725 C G intronic Kmt2d NA NA intronic Mll2 NA NA intronic ENSMUSG00000048154 NA NA 15qF1 NA NA chr15 98685725 TCCxCCC C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 119 1 0 22.983773 0.314286 0.02 -0.315639 24 11 688 272 60 60 0 0 CC 19.187145 64 0 1750 0 KEEP - Kmt2d NO AFB1_2 chr15 98748381 98748381 T G UTR5 Lmbr1l NA NA UTR5 Lmbr1l NA NA UTR5 ENSMUSG00000022999 NA NA 15qF1 NA NA chr15 98748381 GGGxGTC T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 80 0 0 13.162852 0.52 0.02 -0.214174 12 13 295 149 60 60 0 0 TT 9.885751 40 1 1010 19 KEEP - Lmbr1l NO AFB1_2 chr15 99523308 99523308 G T intronic Asic1 NA NA exonic Accn2 synonymous SNV uc011zzg.1:c.G507T:p.G169G exonic ENSMUSG00000023017 synonymous SNV ENSMUST00000109052:c.G507T:p.G169G 15qF1 NA NA chr15 99523308 TGGxGTG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 157 0 0 39.560785 0.269841 0.02 1.241128 46 17 1300 474 60 60 0 0 GG 23.760545 79 0 2196 0 KEEP + Asic1 YES AFB1_2 chr15 99778089 99778089 A C intergenic "1700030F18Rik(dist=16000),Larp4(dist=22407)" NA NA exonic Fam186a nonsynonymous SNV uc007xqk.1:c.T704G:p.V235G exonic ENSMUSG00000045350 nonsynonymous SNV ENSMUST00000100209:c.T704G:p.V235G 15qF1 NA NA chr15 99778089 GAAxCCT A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 72 2 0 21.084181 0.290323 0.02 -0.271836 22 9 615 249 60 60 0 0 AA 11.716739 39 0 1018 0 KEEP NA 1700030F18Rik NO AFB1_2 chr16 10201381 10201381 C T intronic Atf7ip2 NA NA intronic Atf7ip2 NA NA intronic ENSMUSG00000039200 NA NA 16qA1 NA NA chr16 10201381 TACxTTA C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.954388 0.954491 0.999892 74 1 0 10.278307 0.102041 0.02 -0.429704 44 5 1249 149 60 60 0 0 CC 6.918471 23 0 647 0 KEEP + Atf7ip2 NO AFB1_2 chr16 11253961 11253961 C A exonic Gspt1 nonsynonymous SNV NM_001130008:c.G130T:p.G44W exonic Gspt1 nonsynonymous SNV uc007yfe.2:c.G130T:p.G44W exonic ENSMUSG00000062203 nonsynonymous SNV ENSMUST00000080030:c.G130T:p.G44W 16qA1 NA NA chr16 11253961 TCCxGCC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.991954 0.992094 0.999859 105 1 0 78.669387 0.596154 0.02 1.242258 21 31 454 791 60 60 0 0 CC 5.406332 18 0 429 0 KEEP - Gspt1 YES AFB1_2 chr16 17807591 17807591 A G exonic Scarf2 nonsynonymous SNV NM_153790:c.A2416G:p.T806A exonic "NSR1,Scarf2" nonsynonymous SNV uc007ymf.1:c.A952G:p.T318A exonic ENSMUSG00000012017 nonsynonymous SNV ENSMUST00000012161:c.A2416G:p.T806A 16qA3 NA NA chr16 17807591 AAAxCCC A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999996 0.999999 159 1 0 18.890865 0.096154 0.02 2.57688 94 10 2615 284 60 60 0 0 AA 10.818173 36 0 941 0 KEEP + Scarf2 NO AFB1_2 chr16 29217799 29217799 C A exonic Hrasls stopgain SNV NM_013751:c.C102A:p.Y34X exonic Hrasls stopgain SNV uc007yvw.1:c.C102A:p.Y34X exonic ENSMUSG00000022525 stopgain SNV ENSMUST00000089824:c.C102A:p.Y34X 16qB2 NA NA chr16 29217799 GTAxTTG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 151 2 0 98.878395 0.614035 0.02 1.195357 22 35 635 987 60 60 0 0 CC 21.658018 72 0 2032 0 KEEP + Hrasls YES AFB1_2 chr16 29217800 29217800 T C exonic Hrasls synonymous SNV NM_013751:c.T103C:p.L35L exonic Hrasls synonymous SNV uc007yvw.1:c.T103C:p.L35L exonic ENSMUSG00000022525 synonymous SNV ENSMUST00000089824:c.T103C:p.L35L 16qB2 NA NA chr16 29217800 TACxTGG T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 154 2 0 107.097304 0.616667 0.02 1.267328 23 37 668 1068 60 60 0 0 TT 21.656638 72 0 2007 0 KEEP + Hrasls NO AFB1_2 chr16 31812917 31812917 C T intronic Dlg1 NA NA ncRNA_intronic mKIAA4187 NA NA intronic ENSMUSG00000022770 NA NA 16qB2 NA NA chr16 31812917 GGTxTGA C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 73 0 0 9.846527 0.125 0.02 -0.35074 35 5 1016 140 60 60 0 0 CC 9.024866 30 0 859 0 KEEP + Dlg1 NO AFB1_2 chr16 32752309 32752309 G T exonic Muc4 nonsynonymous SNV NM_080457:c.G2100T:p.K700N exonic Muc4 nonsynonymous SNV uc012aeq.1:c.G2100T:p.K700N exonic ENSMUSG00000079620 nonsynonymous SNV ENSMUST00000096106:c.G2100T:p.K700N 16qB3 "Score=0.914754;Name=No.61897,chr16:32754252" NA chr16 32752309 CAAxGGG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 390 19 36 10.925818 0.09375 0.02 1.133968 58 6 1683 167 60 45 0 0 GG 77.464461 261 1 7388 9 KEEP + Muc4 YES AFB1_2 chr16 35866295 35866295 C A exonic Parp14 nonsynonymous SNV NM_001039530:c.G267T:p.M89I exonic Parp14 nonsynonymous SNV uc007zbs.2:c.G267T:p.M89I exonic ENSMUSG00000034422 nonsynonymous SNV ENSMUST00000042665:c.G267T:p.M89I 16qB3 NA NA chr16 35866295 GGGxATC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 97 0 0 29.457601 0.458333 0.02 -0.210481 13 11 380 314 60 60 0 0 CC 18.342282 61 0 1716 0 KEEP - Parp14 YES AFB1_2 chr16 38251497 38251497 C A exonic Nr1i2 nonsynonymous SNV NM_001098404:c.G788T:p.C263F exonic Nr1i2 nonsynonymous SNV uc007zep.1:c.G788T:p.C263F exonic ENSMUSG00000022809 nonsynonymous SNV ENSMUST00000023504:c.G911T:p.C304F 16qB3 NA NA chr16 38251497 AAGxAGT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 289 2 0 28.671216 0.625 0.02 -0.140316 6 10 172 285 60 60 0 0 CC 65.563057 218 0 6083 0 KEEP - Nr1i2 YES AFB1_2 chr16 38602505 38602505 T A exonic Arhgap31 nonsynonymous SNV NM_020260:c.A3311T:p.D1104V exonic Arhgap31 nonsynonymous SNV uc007zfg.1:c.A3311T:p.D1104V exonic ENSMUSG00000022799 nonsynonymous SNV ENSMUST00000023487:c.A3311T:p.D1104V 16qB4 NA NA chr16 38602505 AGGxCAG T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 94 0 0 44.739817 0.339623 0.02 1.230491 35 18 953 509 60 60 0 0 TT 11.719032 39 0 1034 0 KEEP - Arhgap31 NO AFB1_2 chr16 44217951 44217951 C T exonic Gm608 nonsynonymous SNV NM_001029889:c.C2680T:p.H894Y exonic Gm608 nonsynonymous SNV uc012afz.1:c.C2680T:p.H894Y exonic ENSMUSG00000068284 nonsynonymous SNV ENSMUST00000119746:c.C2680T:p.H894Y 16qB4 NA NA chr16 44217951 TCCxACG C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 102 0 0 20.970434 0.4 0.02 -0.175398 12 8 345 230 60 60 0 0 CC 20.443039 68 0 1912 0 KEEP + Gm608 NO AFB1_2 chr16 59554050 59554050 C G exonic Crybg3 nonsynonymous SNV NM_174848:c.G1524C:p.Q508H exonic Crybg3 nonsynonymous SNV uc007zpk.2:c.G1524C:p.Q508H exonic ENSMUSG00000022723 nonsynonymous SNV ENSMUST00000044604:c.G1128C:p.Q376H 16qC1.3 NA NA chr16 59554050 AGTxTGC C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 49 0 0 8.569047 0.222222 0.02 -0.157848 14 4 405 108 60 60 0 0 CC 8.7241 29 0 832 0 KEEP - Crybg3 NO AFB1_2 chr16 60424982 60424982 C T exonic Epha6 nonsynonymous SNV NM_007938:c.G679A:p.D227N exonic Epha6 nonsynonymous SNV uc007zpo.1:c.G679A:p.D227N exonic ENSMUSG00000055540 nonsynonymous SNV ENSMUST00000068860:c.G679A:p.D227N 16qC1.3 NA NA chr16 60424982 CATxGGA C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 72 0 0 10.842109 0.16129 0.02 -0.271712 26 5 662 144 60 60 0 0 CC 11.415909 38 0 937 0 KEEP - Epha6 NO AFB1_2 chr16 64770632 64770632 C T exonic 4930453N24Rik nonsynonymous SNV NM_026273:c.G58A:p.D20N exonic 4930453N24Rik nonsynonymous SNV uc007zqb.1:c.G58A:p.D20N exonic ENSMUSG00000059920 nonsynonymous SNV ENSMUST00000076991:c.G58A:p.D20N 16qC1.3 NA NA chr16 64770632 TGTxCAG C T AFB1_2_TTAGGC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.289823 0.292001 0.99254 29 2 0 6.392604 0.176471 0.02 -0.14909 14 3 407 84 60 37 0 0 CC 2.707624 9 0 264 0 KEEP - 4930453N24Rik NO AFB1_2 chr16 87416464 87416464 T C exonic Ltn1 nonsynonymous SNV NM_001081068:c.A1453G:p.N485D exonic Ltn1 nonsynonymous SNV uc007zuh.1:c.A1186G:p.N396D exonic ENSMUSG00000052299 nonsynonymous SNV ENSMUST00000039449:c.A1453G:p.N485D 16qC3.3 NA NA chr16 87416464 CGTxCTC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 104 0 0 14.951533 0.14 0.02 -0.438487 43 7 1225 204 60 60 0 0 TT 13.508489 45 0 1224 0 KEEP - Ltn1 NO AFB1_2 chr16 91583618 91583618 A C exonic Tmem50b nonsynonymous SNV NM_030018:c.T115G:p.W39G exonic Tmem50b nonsynonymous SNV uc007zxr.1:c.T115G:p.W39G exonic ENSMUSG00000022964 nonsynonymous SNV ENSMUST00000023686:c.T115G:p.W39G 16qC3.3 NA NA chr16 91583618 TCCxCCA A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.353904 0.353947 0.999879 44 0 0 7.611985 0.473684 0.02 -0.161567 10 9 234 94 60 60 0 0 AA 5.30992 20 1 513 6 KEEP - Tmem50b NO AFB1_2 chr16 91851163 91851163 A C exonic Itsn1 nonsynonymous SNV NM_001110275:c.A2659C:p.T887P exonic Itsn1 nonsynonymous SNV uc007zyl.1:c.A580C:p.T194P exonic ENSMUSG00000022957 nonsynonymous SNV ENSMUST00000143023:c.A376C:p.T126P 16qC4 NA NA chr16 91851163 TTTxCCC A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.717238 0.717315 0.999892 58 0 0 8.511581 0.4 0.02 -0.263808 18 12 465 120 60 60 0 0 AA 6.896092 23 0 532 0 KEEP + Itsn1 NO AFB1_2 chr16 93855640 93855640 G C intronic Morc3 NA NA intronic Morc3 NA NA intronic ENSMUSG00000039456 NA NA 16qC4 NA NA chr16 93855640 GCTxTTT G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.954357 0.954491 0.999859 71 0 0 10.178307 0.102041 0.02 -0.429752 44 5 1292 148 60 60 0 0 GG 5.402614 18 0 494 0 KEEP + Morc3 NO AFB1_2 chr16 98172877 98172877 A G exonic Zbtb21 nonsynonymous SNV NM_001081684:c.T1370C:p.V457A exonic Zfp295 nonsynonymous SNV uc008adw.1:c.T1370C:p.V457A exonic ENSMUSG00000046962 nonsynonymous SNV ENSMUST00000063605:c.T1370C:p.V457A 16qC4 NA NA chr16 98172877 GCTxCTG A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.52183 0.522161 0.999366 44 0 0 6.307099 0.125 0.02 -0.210449 21 3 577 88 60 60 0 0 AA 5.107649 17 0 433 0 KEEP - Zbtb21 NO AFB1_2 chr17 23806895 23806895 C A exonic Thoc6 nonsynonymous SNV NM_001008425:c.G505T:p.D169Y exonic Thoc6 nonsynonymous SNV uc008ass.1:c.G505T:p.D169Y exonic ENSMUSG00000041319 nonsynonymous SNV ENSMUST00000047436:c.G505T:p.D169Y 17qA3.3 NA NA chr17 23806895 AGTxTGT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 244 4 0 6.801245 0.25 0.02 -0.105241 9 3 264 83 60 60 0 0 CC 58.583695 195 0 5502 0 KEEP - Thoc6 YES AFB1_2 chr17 24019548 24019548 G T exonic Dcpp1 synonymous SNV NM_019910:c.G303T:p.S101S exonic Dcpp1 synonymous SNV uc008atz.1:c.G303T:p.S101S exonic ENSMUSG00000061980 synonymous SNV ENSMUST00000068580:c.G303T:p.S101S 17qA3.3 NA NA chr17 24019548 TTCxGCT G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 93 0 1 6.680004 0.1875 0.02 -0.14027 13 3 346 86 60 37 0 0 GG 20.428257 68 0 1681 0 KEEP + Dcpp1 YES AFB1_2 chr17 25033328 25033328 G T upstream;downstream Nme3;Mrps34 NA NA UTR3 Mrps34 NA NA UTR3 "ENSMUSG00000024163,ENSMUSG00000038880" NA NA 17qA3.3 NA NA chr17 25033328 GCAxGAC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119538 0.120436 0.99254 21 0 0 31.210731 0.909091 0.02 -0.09646 1 10 29 279 60 60 0 0 GG 2.707427 9 0 257 0 KEEP NA Nme3 YES AFB1_2 chr17 27702810 27702810 C A upstream AI413582 NA NA upstream AI413582 NA NA exonic ENSMUSG00000073429 nonsynonymous SNV ENSMUST00000097361:c.C670A:p.Q224K 17qA3.3 NA NA chr17 27702810 GCGxAGC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.982161 0.989542 0.99254 72 1 0 152.373384 0.836066 0.02 1.160452 10 51 285 1399 60 60 0 0 CC 2.707103 9 0 251 0 KEEP - AI413582 YES AFB1_2 chr17 29109326 29109326 C A UTR3 Stk38 NA NA UTR3 Stk38 NA NA UTR3 ENSMUSG00000024006 NA NA 17qA3.3 NA NA chr17 29109326 TCCxGGT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.935217 0.941741 0.993072 59 0 0 22.712112 0.212766 0.02 -0.411987 37 10 980 285 60 60 0 0 CC 3.307501 11 0 299 0 KEEP - Stk38 YES AFB1_2 chr17 3164159 3164159 C T exonic Scaf8 nonsynonymous SNV NM_134123:c.C488T:p.T163I exonic "Rbm16,Scaf8" nonsynonymous SNV uc008aej.2:c.C488T:p.T163I exonic ENSMUSG00000046201 nonsynonymous SNV ENSMUST00000076734:c.C488T:p.T163I 17qA1 "Score=0.952137;Name=No.27570,chr12:3170347" NA chr17 3164159 TGAxACC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 107 1 0 12.560678 0.1875 0.02 -0.280524 26 6 722 164 60 60 0 0 CC 18.340713 61 0 1694 0 KEEP + Scaf8 NO AFB1_2 chr17 33283761 33283761 G T intergenic "Morc2b(dist=7133),Olfr55(dist=29600)" NA NA ncRNA_intronic Zfp422-rs1 NA NA intergenic "ENSMUSG00000048602(dist=7133),ENSMUSG00000079309(dist=29600)" NA NA 17qB1 NA NA chr17 33283761 AGGxGGA G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 106 2 0 23.698223 0.207547 0.02 1.230443 42 11 1203 302 60 60 0 0 GG 14.135594 47 0 1299 0 KEEP NA Morc2b YES AFB1_2 chr17 34163137 34163137 C T UTR3 H2-Ke6 NA NA UTR3 H2-Ke6 NA NA ncRNA_exonic ENSMUSG00000092595 NA NA 17qB1 NA NA chr17 34163137 GTCxGGC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 73 0 0 23.154794 0.615385 0.02 -0.11399 5 8 132 231 60 60 0 0 CC 15.019673 50 0 1309 0 KEEP - H2-Ke6 NO AFB1_2 chr17 34952036 34952036 C A exonic C4a unknown UNKNOWN exonic C4a nonsynonymous SNV uc008cdp.1:c.G3065T:p.R1022M ncRNA_exonic ENSMUSG00000015451 NA NA 17qB1 "Score=0.953125;Name=No.65650,chr17:34847295" NA chr17 34952036 GTCxTGT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 80 0 0 13.444026 0.206897 0.02 -0.25433 23 6 665 170 60 60 0 0 CC 12.933576 43 0 1204 0 KEEP - C4a YES AFB1_2 chr17 35989868 35989868 C G exonic Mdc1 nonsynonymous SNV NM_001010833:c.C3362G:p.A1121G exonic Mdc1 nonsynonymous SNV uc008cir.1:c.C3362G:p.A1121G exonic ENSMUSG00000061607 nonsynonymous SNV ENSMUST00000082337:c.C3362G:p.A1121G 17qB1 NA NA chr17 35989868 GGGxCAC C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 84 0 0 6.328116 0.136364 0.02 -0.192944 19 3 551 87 60 60 0 0 CC 17.66325 59 0 1585 0 KEEP + Mdc1 NO AFB1_2 chr17 39981098 39981098 C T intergenic "Gm9041(dist=198486),Gm21946(dist=106367)" NA NA ncRNA_exonic Mir715 NA NA intergenic "ENSMUSG00000078022(dist=383714),ENSMUSG00000045999(dist=3950)" NA NA 17qB1 NA NA chr17 39981098 CTCxGTG C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1182 6 0 14.270437 0.034722 0.02 5.952859 278 10 6987 283 70 60 0 0 CC 213.181169 713 1 18637 9 KEEP NA Gm9041 NO AFB1_2 chr17 91020190 91020190 T A intronic Nrxn1 NA NA UTR3 mKIAA0578 NA NA intronic ENSMUSG00000024109 NA NA 17qE5 NA NA chr17 91020190 TTTxGAA T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999891 0.999999 0.999892 148 2 0 40.887877 0.154472 0.02 2.508373 104 19 2977 548 60 60 0 0 TT 6.891882 23 0 619 0 KEEP - Nrxn1 NO AFB1_2 chr18 20124807 20124807 C G exonic Dsc3 nonsynonymous SNV NM_007882:c.G2152C:p.A718P exonic Dsc3 nonsynonymous SNV uc008eea.2:c.G2152C:p.A718P exonic ENSMUSG00000059898 nonsynonymous SNV ENSMUST00000079894:c.G2152C:p.A718P 18qA2 NA NA chr18 20124807 GGGxAGT C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.99649 1 0.99649 157 2 0 40.327787 0.138686 0.02 2.484175 118 19 3455 552 60 60 0 0 CC 4.51242 15 0 430 0 KEEP - Dsc3 NO AFB1_2 chr18 34738338 34738338 C A exonic Nme5 nonsynonymous SNV NM_080637:c.G3T:p.M1I exonic Nme5 nonsynonymous SNV uc008eks.1:c.G3T:p.M1I exonic ENSMUSG00000035984 nonsynonymous SNV ENSMUST00000154342:c.G3T:p.M1I 18qB1 NA NA chr18 34738338 CTCxATT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.981888 0.981955 0.999931 84 1 0 11.640787 0.105263 0.02 1.293634 51 6 1481 171 60 60 0 0 CC 7.52059 25 0 715 0 KEEP - Nme5 YES AFB1_2 chr18 36942695 36942695 G T exonic Hars synonymous SNV NM_008214:c.C60A:p.G20G exonic Hars synonymous SNV uc008eop.2:c.C60A:p.G20G exonic ENSMUSG00000001380 synonymous SNV ENSMUST00000001416:c.C60A:p.G20G 18qB2 NA NA chr18 36942695 AAGxCCC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 290 3 0 9.658419 0.5 0.02 -0.068768 4 4 92 101 60 60 0 0 GG 64.256974 219 1 5993 13 KEEP - Hars YES AFB1_2 chr18 37596830 37596830 C A exonic Pcdhb12 synonymous SNV NM_053137:c.C1374A:p.P458P exonic Pcdhb12 synonymous SNV uc008epx.1:c.C1374A:p.P458P exonic ENSMUSG00000043458 synonymous SNV ENSMUST00000055495:c.C1392A:p.P464P 18qB3 "Score=0.902439;Name=No.69632,chr18:37581243" NA chr18 37596830 TCCxGCC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 236 2 0 10.667706 0.15625 0.02 -0.280449 27 5 677 143 60 22 0 0 CC 48.907495 172 1 4348 26 KEEP + Pcdhb12 YES AFB1_2 chr18 37596839 37596839 T G exonic Pcdhb12 nonsynonymous SNV NM_053137:c.T1383G:p.H461Q exonic Pcdhb12 nonsynonymous SNV uc008epx.1:c.T1383G:p.H461Q exonic ENSMUSG00000043458 nonsynonymous SNV ENSMUST00000055495:c.T1401G:p.H467Q 18qB3 "Score=0.902439;Name=No.69632,chr18:37581243" NA chr18 37596839 GCAxATA T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 249 2 0 10.994157 0.151515 0.02 -0.289289 28 5 764 147 60 22 0 0 TT 51.208049 180 1 4741 27 KEEP + Pcdhb12 NO AFB1_2 chr18 61981507 61981507 G T intronic Ablim3 NA NA intronic Ablim3 NA NA intronic ENSMUSG00000032735 NA NA 18qE1 NA NA chr18 61981507 CCAxAGA G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 80 0 0 12.892614 0.454545 0.02 -0.096466 6 5 176 138 60 60 0 0 GG 17.138982 57 0 1605 0 KEEP - Ablim3 YES AFB1_2 chr18 62014841 62014841 T A intronic Ablim3 NA NA intronic Ablim3 NA NA intronic ENSMUSG00000032735 NA NA 18qE1 NA NA chr18 62014841 GCCxATG T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 162 2 1 12.002209 0.25 0.02 -0.1754 15 5 432 145 60 60 0 0 TT 34.867709 116 0 3172 0 KEEP - Ablim3 NO AFB1_2 chr18 74729471 74729471 A T exonic Myo5b nonsynonymous SNV NM_201600:c.A78T:p.E26D exonic Myo5b nonsynonymous SNV uc008fpo.1:c.A78T:p.E26D exonic ENSMUSG00000025885 nonsynonymous SNV ENSMUST00000074157:c.A78T:p.E26D 18qE2 NA NA chr18 74729471 TGAxTTA A T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 69 1 0 15.936663 0.212121 0.02 -0.289377 26 7 721 200 60 60 0 0 AA 9.022942 30 0 823 0 KEEP + Myo5b NO AFB1_2 chr18 86668470 86668470 A T exonic Neto1 stopgain SNV NM_144946:c.A1519T:p.R507X exonic Neto1 stopgain SNV uc008fuz.2:c.A1519T:p.R507X exonic ENSMUSG00000050321 stopgain SNV ENSMUST00000058829:c.A1519T:p.R507X 18qE4 NA NA chr18 86668470 TCCxGAC A T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.387356 0.387407 0.999869 46 0 0 38.076869 0.65 0.02 -0.175383 7 13 197 375 60 60 0 0 AA 6.316669 21 0 587 0 KEEP + Neto1 NO AFB1_2 chr19 16043617 16043617 G C exonic Cep78 stopgain SNV NM_198019:c.C1340G:p.S447X exonic Cep78 stopgain SNV uc008gwq.1:c.C401G:p.S134X exonic ENSMUSG00000041491 stopgain SNV ENSMUST00000047704:c.C1340G:p.S447X 19qA NA NA chr19 16043617 TCTxAAG G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.987814 0.987943 0.999869 87 0 0 147.191028 0.783333 0.02 1.365948 13 47 387 1384 60 60 0 0 GG 6.317807 21 0 610 0 KEEP - Cep78 NO AFB1_2 chr19 17589626 17589626 C A exonic Pcsk5 nonsynonymous SNV NM_001190483:c.G2872T:p.D958Y exonic Pcsk5 nonsynonymous SNV uc008gxp.2:c.G2872T:p.D958Y exonic ENSMUSG00000024713 nonsynonymous SNV ENSMUST00000025618:c.G2872T:p.D958Y 19qB NA NA chr19 17589626 CACxTGC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.455625 0.457757 0.995343 37 0 0 17.063562 0.318182 0.02 -0.192937 15 7 434 197 60 60 0 0 CC 4.211164 14 0 392 0 KEEP - Pcsk5 YES AFB1_2 chr19 20776719 20776719 C A exonic Aldh1a7 nonsynonymous SNV NM_011921:c.G1182T:p.M394I exonic Aldh1a7 nonsynonymous SNV uc008gyn.1:c.G1182T:p.M394I exonic ENSMUSG00000024747 nonsynonymous SNV ENSMUST00000025656:c.G1182T:p.M394I 19qB NA NA chr19 20776719 GCGxATC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 108 0 0 26.506099 0.692308 0.02 -0.114009 4 9 117 257 60 60 0 0 CC 23.462687 78 0 2200 0 KEEP - Aldh1a7 YES AFB1_2 chr19 24018519 24018519 C A exonic Apba1 synonymous SNV NM_177034:c.C2215A:p.R739R exonic Apba1 synonymous SNV uc008hai.1:c.C2215A:p.R739R exonic ENSMUSG00000024897 synonymous SNV ENSMUST00000167716:c.C1045A:p.R349R 19qB NA NA chr19 24018519 TCCxGAG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 38 0 0 22.663275 0.571429 0.02 -0.122773 6 8 169 230 60 60 0 0 CC 4.809716 16 0 420 0 KEEP + Apba1 YES AFB1_2 chr19 25753111 25753111 C A exonic Dmrt2 nonsynonymous SNV NM_145831:c.C1583A:p.A528D exonic Dmrt2 nonsynonymous SNV uc008hbm.1:c.C1583A:p.A528D exonic ENSMUSG00000048138 nonsynonymous SNV ENSMUST00000053068:c.C1583A:p.A528D 19qC1 NA NA chr19 25753111 TAGxCAA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999998 59 0 0 8.969445 0.190476 0.02 -0.184174 17 4 494 115 60 60 0 0 CC 9.924528 33 0 903 0 KEEP + Dmrt2 YES AFB1_2 chr19 32874527 32874527 A C exonic Pten nonsynonymous SNV NM_008960:c.A430C:p.K144Q exonic Pten nonsynonymous SNV uc008hfq.1:c.A430C:p.K144Q exonic ENSMUSG00000013663 nonsynonymous SNV ENSMUST00000013807:c.A430C:p.K144Q 19qC1 NA NA chr19 32874527 GGCxAAT A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 73 0 0 104.828672 0.809524 0.02 -0.368328 8 34 227 975 60 60 0 0 AA 8.42121 28 0 768 0 KEEP + Pten NO AFB1_2 chr19 34953432 34953432 C A exonic Pank1 synonymous SNV NM_001114339:c.G135T:p.T45T exonic Pank1 synonymous SNV uc008hgw.2:c.G135T:p.T45T exonic ENSMUSG00000033610 synonymous SNV ENSMUST00000036584:c.G135T:p.T45T 19qC2 NA NA chr19 34953432 TCCxGTC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.859287 0.865745 0.99254 48 1 0 10.504914 0.128205 0.02 -0.341835 34 5 872 146 60 60 0 0 CC 2.704869 9 0 230 0 KEEP - Pank1 YES AFB1_2 chr19 36955043 36955043 T A exonic Tnks2 synonymous SNV NM_001163635:c.T2655A:p.L885L exonic Tnks2 synonymous SNV uc008hhu.2:c.T2655A:p.L885L exonic ENSMUSG00000024811 synonymous SNV ENSMUST00000164665:c.T801A:p.L267L 19qC2 NA NA chr19 36955043 CCTxGGA T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 93 0 0 47.629639 0.727273 0.02 -0.192936 6 16 174 456 60 60 0 0 TT 17.445469 58 0 1609 0 KEEP + Tnks2 NO AFB1_2 chr19 44171747 44171747 A G exonic Chuk nonsynonymous SNV NM_001162410:c.T635C:p.F212S exonic Chuk nonsynonymous SNV uc008hpg.2:c.T635C:p.F212S exonic ENSMUSG00000025199 nonsynonymous SNV ENSMUST00000026217:c.T635C:p.F212S 19qC3 NA NA chr19 44171747 TCAxACA A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.999859 47 1 0 20.142789 0.285714 0.02 -0.245563 20 8 574 236 60 37 0 0 AA 5.414333 18 0 503 0 KEEP - Chuk NO AFB1_2 chr19 46548124 46548124 G T exonic Sufu nonsynonymous SNV NM_001025391:c.G1085T:p.R362L exonic Sufu nonsynonymous SNV uc008hto.1:c.G1088T:p.R363L exonic ENSMUSG00000025231 nonsynonymous SNV ENSMUST00000111866:c.G953T:p.R318L 19qC3 NA NA chr19 46548124 TCCxCAC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999999 52 0 0 27.665357 0.75 0.02 -0.105213 3 9 70 263 60 60 0 0 GG 10.520204 35 0 905 0 KEEP + Sufu YES AFB1_2 chr19 5647168 5647168 G T exonic Rela nonsynonymous SNV NM_009045:c.G1402T:p.V468L exonic Rela nonsynonymous SNV uc008gef.1:c.G1252T:p.V418L exonic ENSMUSG00000024927 nonsynonymous SNV ENSMUST00000025867:c.G1402T:p.V468L 19qA NA NA chr19 5647168 TCTxTGG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 0.999997 42 0 0 8.953466 0.75 0.02 -0.035078 1 3 28 85 60 60 0 0 GG 8.710435 29 0 794 0 KEEP + Rela YES AFB1_2 chr19 9086022 9086022 C G exonic Ahnak nonsynonymous SNV NM_009643:c.C10179G:p.N3393K exonic Ahnak nonsynonymous SNV uc008goj.1:c.C10179G:p.N3393K exonic ENSMUSG00000069833 nonsynonymous SNV ENSMUST00000092956:c.C10179G:p.N3393K 19qA "Score=0.951474;Name=No.72597,chr19:9083079" NA chr19 9086022 GAAxATC C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 132 0 18 8.411576 0.102564 0.02 -0.342023 35 4 999 121 43 23 0 0 CC 19.251331 64 0 1806 0 KEEP + Ahnak NO AFB1_2 chr1 107615403 107615403 G T exonic 2310035C23Rik stopgain SNV NM_029349:c.G1876T:p.E626X exonic 2310035C23Rik stopgain SNV uc007cgn.2:c.G790T:p.E264X exonic ENSMUSG00000026319 stopgain SNV ENSMUST00000039173:c.G1876T:p.E626X 1qE2.1 NA NA chr1 107615403 ATGxAAG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.993633 1 0.993634 145 1 0 78.714136 0.263566 0.02 2.161229 95 34 2793 948 60 60 0 0 GG 3.60984 12 0 341 0 KEEP + 2310035C23Rik YES AFB1_2 chr1 14745543 14745543 G T exonic Msc nonsynonymous SNV NM_010827:c.C287A:p.A96D exonic Msc nonsynonymous SNV uc007aja.1:c.C287A:p.A96D exonic "ENSMUSG00000025930,ENSMUSG00000054493" nonsynonymous SNV ENSMUST00000027062:c.C287A:p.A96D 1qA3 NA NA chr1 14745543 GCGxCCG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.999859 29 0 0 6.932494 0.272727 0.02 -0.096464 8 3 229 83 60 60 0 0 GG 5.413944 18 0 497 0 KEEP - Msc YES AFB1_2 chr1 154621574 154621574 C T UTR3 Arpc5 NA NA UTR3 Arpc5 NA NA UTR3 ENSMUSG00000008475 NA NA 1qG3 "Score=0.966717;Name=No.17192,chr12:25176459" NA chr1 154621574 CTTxCTT C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.871627 0.877708 0.993072 54 1 3 10.254555 0.125 0.02 -0.349455 35 5 1003 144 60 37 0 0 CC 3.308885 11 0 310 0 KEEP + Arpc5 NO AFB1_2 chr1 154621576 154621576 T G UTR3 Arpc5 NA NA UTR3 Arpc5 NA NA UTR3 ENSMUSG00000008475 NA NA 1qG3 "Score=0.966717;Name=No.17192,chr12:25176459" NA chr1 154621576 TCCxTTT T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.859748 0.865745 0.993072 53 1 3 8.50934 0.128205 0.02 -0.34199 34 5 985 126 60 37 0 0 TT 3.308668 11 0 306 0 KEEP + Arpc5 NO AFB1_2 chr1 193177802 193177802 C A exonic Ppp2r5a nonsynonymous SNV NM_144880:c.G1279T:p.G427C exonic Ppp2r5a nonsynonymous SNV uc007eci.1:c.G1279T:p.G427C exonic ENSMUSG00000026626 nonsynonymous SNV ENSMUST00000067976:c.G1279T:p.G427C 1qH6 NA NA chr1 193177802 TGCxGTT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 83 5 0 17.331944 0.259259 0.02 -0.23671 20 7 531 207 52 37 0 0 CC 15.023183 50 0 1253 0 KEEP - Ppp2r5a YES AFB1_2 chr1 193177812 193177812 C A exonic Ppp2r5a nonsynonymous SNV NM_144880:c.G1269T:p.M423I exonic Ppp2r5a nonsynonymous SNV uc007eci.1:c.G1269T:p.M423I exonic ENSMUSG00000026626 nonsynonymous SNV ENSMUST00000067976:c.G1269T:p.M423I 1qH6 NA NA chr1 193177812 CTCxATG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 77 5 0 16.63046 0.259259 0.02 -0.236788 20 7 577 200 60 37 0 0 CC 13.838366 46 0 1322 0 KEEP - Ppp2r5a YES AFB1_2 chr1 196774146 196774146 A C exonic Cd34 nonsynonymous SNV NM_001111059:c.A193C:p.T65P exonic Cd34 nonsynonymous SNV uc007eep.2:c.A193C:p.T65P exonic ENSMUSG00000016494 nonsynonymous SNV ENSMUST00000016638:c.A193C:p.T65P 1qH6 NA NA chr1 196774146 AGTxCCA A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 106 0 0 7.542039 0.538462 0.02 -0.111759 6 7 150 83 60 60 0 0 AA 23.106564 77 0 1961 0 KEEP + Cd34 NO AFB1_2 chr1 43010343 43010343 C A intronic Gpr45 NA NA intronic Gpr45 NA NA exonic ENSMUSG00000079587 stopgain SNV ENSMUST00000055874:c.C387A:p.C129X 1qB NA NA chr1 43010343 CTGxGAG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 37 0 0 33.085278 0.785714 0.02 -0.12277 3 11 83 310 60 60 0 0 CC 6.894263 23 0 594 0 KEEP + Gpr45 YES AFB1_2 chr1 63723838 63723838 C A exonic Dytn nonsynonymous SNV NM_001081658:c.G149T:p.G50V exonic Dytn nonsynonymous SNV uc007bgi.1:c.G149T:p.G50V exonic ENSMUSG00000069085 nonsynonymous SNV ENSMUST00000090313:c.G149T:p.G50V 1qC2 NA NA chr1 63723838 TCCxCAG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019979 0.019982 0.999863 32 0 0 8.953586 0.75 0.02 -0.035076 1 3 27 85 60 60 0 0 CC 6.015301 20 0 558 0 KEEP - Dytn YES AFB1_2 chr1 65270088 65270088 T A exonic Pikfyve nonsynonymous SNV NM_011086:c.T1363A:p.F455I exonic Pikfyve nonsynonymous SNV uc007bhq.1:c.T1330A:p.F444I exonic ENSMUSG00000025949 nonsynonymous SNV ENSMUST00000097707:c.T1330A:p.F444I 1qC2 NA NA chr1 65270088 GAAxTTT T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 38 0 0 8.869023 0.222222 0.02 -0.157845 14 4 393 111 60 60 0 0 TT 5.112574 17 0 460 0 KEEP + Pikfyve NO AFB1_2 chr1 87918747 87918747 G T exonic Spata3 nonsynonymous SNV NM_001122732:c.G124T:p.A42S exonic Spata3 nonsynonymous SNV uc007bur.2:c.G124T:p.A42S exonic ENSMUSG00000026226 nonsynonymous SNV ENSMUST00000052854:c.G124T:p.A42S 1qC5 NA NA chr1 87918747 CCCxCCT G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 80 0 0 50.515795 0.708333 0.02 -0.227989 7 17 191 487 60 70 0 0 GG 13.19762 44 0 1054 0 KEEP + Spata3 YES AFB1_2 chr1 90145105 90145105 G A intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90145105 TCTxTGT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 92 1 0 7.725756 0.142857 0.02 -0.245551 24 4 692 108 60 60 0 0 GG 15.641541 52 0 1481 0 KEEP + Mroh2a NO AFB1_2 chr1 90152671 90152671 G A exonic Mroh2a synonymous SNV NM_001281466:c.G4029A:p.L1343L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G4053A:p.L1351L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G4029A:p.L1343L 1qD NA NA chr1 90152671 GCTxGCA G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 254 2 0 6.493201 0.142857 0.02 -0.184166 18 3 518 88 60 60 0 0 GG 54.42771 181 0 5105 0 KEEP + Mroh2a NO AFB1_2 chr1 99630638 99630638 C A exonic Ppip5k2 nonsynonymous SNV NM_173760:c.G2111T:p.W704L exonic Ppip5k2 nonsynonymous SNV uc007cfk.2:c.G2111T:p.W704L exonic ENSMUSG00000040648 nonsynonymous SNV ENSMUST00000163249:c.G2129T:p.W710L 1qD NA NA chr1 99630638 GACxATC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 48 3 0 34.276442 0.6 0.02 -0.175398 8 12 231 344 60 60 0 0 CC 7.219051 24 0 682 0 KEEP - Ppip5k2 YES AFB1_2 chr2 120522086 120522086 C A intergenic "Haus2(dist=75532),Cdan1(dist=19804)" NA NA exonic AK087617 nonsynonymous SNV uc012cch.1:c.C579A:p.N193K exonic ENSMUSG00000033705 nonsynonymous SNV ENSMUST00000140843:c.C1833A:p.N611K 2qE5 NA NA chr2 120522086 AAAxCAA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 72 0 0 7.390607 0.241379 0.02 -0.261305 22 7 614 110 60 60 0 0 CC 8.720584 29 0 792 0 KEEP NA Haus2 YES AFB1_2 chr2 121267055 121267055 T A exonic Ell3 nonsynonymous SNV NM_145973:c.A491T:p.H164L exonic Ell3 nonsynonymous SNV uc008lzc.1:c.A491T:p.H164L exonic ENSMUSG00000027246 nonsynonymous SNV ENSMUST00000116432:c.A491T:p.H164L 2qE5 NA NA chr2 121267055 TGGxGGC T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 97 1 0 18.876895 0.4375 0.02 -0.140321 9 7 260 203 60 60 0 0 TT 20.129803 67 0 1758 0 KEEP - Ell3 NO AFB1_2 chr2 122175106 122175106 C G exonic Shf nonsynonymous SNV NM_001013829:c.G700C:p.A234P exonic Shf nonsynonymous SNV uc008maq.1:c.G319C:p.A107P exonic ENSMUSG00000033256 nonsynonymous SNV ENSMUST00000110530:c.G682C:p.A228P 2qE5 NA NA chr2 122175106 TGGxCAC C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.739567 0.739671 0.999859 56 2 0 10.865632 0.15625 0.02 -0.28064 27 5 778 145 60 60 0 0 CC 5.414089 18 0 500 0 KEEP - Shf NO AFB1_2 chr2 127365544 127365544 C T exonic Prom2 nonsynonymous SNV NM_138750:c.G587A:p.S196N exonic Prom2 nonsynonymous SNV uc008mfp.2:c.G587A:p.S196N exonic ENSMUSG00000027376 nonsynonymous SNV ENSMUST00000028855:c.G587A:p.S196N 2qF1 NA NA chr2 127365544 AGGxTGA C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999999 54 0 0 19.404926 0.636364 0.02 -0.096458 4 7 116 192 60 60 0 0 CC 10.528619 35 0 999 0 KEEP - Prom2 NO AFB1_2 chr2 127948945 127948945 T G UTR3 Acoxl NA NA UTR3 Acoxl NA NA UTR3 ENSMUSG00000027380 NA NA 2qF1 NA NA chr2 127948945 AGGxGCA T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.54878 0.552887 0.99257 38 0 0 13.891245 0.4 0.02 -0.217871 12 8 325 160 60 60 0 0 TT 2.405919 8 0 217 0 KEEP + Acoxl NO AFB1_2 chr2 131386783 131386783 G T intronic Adra1d NA NA intronic Adra1d NA NA intronic ENSMUSG00000027335 NA NA 2qF1 NA NA chr2 131386783 GGGxAAG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024073 0.024074 0.999988 33 0 0 11.619424 0.8 0.02 -0.043842 1 4 29 108 60 60 0 0 GG 8.121649 27 0 758 0 KEEP - Adra1d YES AFB1_2 chr2 155161072 155161072 T A intronic Pigu NA NA UTR3 Pigu NA NA intronic ENSMUSG00000038383 NA NA 2qH1 NA NA chr2 155161072 AGCxTTG T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 67 0 0 10.176782 0.363636 0.02 -0.09647 7 4 203 114 60 60 0 0 TT 13.23479 44 0 1230 0 KEEP - Pigu NO AFB1_2 chr2 160734045 160734045 G T exonic Emilin3 nonsynonymous SNV NM_182840:c.C1519A:p.L507M exonic Emilin3 nonsynonymous SNV uc008nrk.1:c.C1519A:p.L507M exonic ENSMUSG00000050700 nonsynonymous SNV ENSMUST00000057169:c.C1519A:p.L507M 2qH2 NA NA chr2 160734045 CCAxCCT G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 76 0 0 23.983966 0.473684 0.02 -0.166623 10 9 287 254 60 60 0 0 GG 14.438459 48 0 1350 0 KEEP - Emilin3 YES AFB1_2 chr2 161390404 161390404 C A exonic Ptprt nonsynonymous SNV NM_021464:c.G2923T:p.A975S exonic Ptprt nonsynonymous SNV uc008nru.1:c.G550T:p.A184S exonic ENSMUSG00000053141 nonsynonymous SNV ENSMUST00000109441:c.G2923T:p.A975S 2qH2 NA NA chr2 161390404 TGGxAGA C A AFB1_2_TTAGGC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL UNCOVERED 0.120436 0.120436 1 84 4 0 16.769505 0.545455 0.02 -0.096473 5 6 149 172 60 60 0 0 CC 18.044164 60 0 1755 0 KEEP - Ptprt YES AFB1_2 chr2 173034571 173034571 T C exonic Zbp1 nonsynonymous SNV NM_021394:c.A1006G:p.M336V exonic Zbp1 nonsynonymous SNV uc008odo.2:c.A1006G:p.M336V exonic ENSMUSG00000027514 nonsynonymous SNV ENSMUST00000029018:c.A1006G:p.M336V 2qH3 NA NA chr2 173034571 CCAxGAC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 135 2 0 11.430802 0.263158 0.02 -0.166614 14 5 394 138 60 60 0 0 TT 28.270264 94 0 2554 0 KEEP - Zbp1 NO AFB1_2 chr2 174469187 174469187 T C exonic Zfp831 synonymous SNV NM_001099328:c.T153C:p.T51T exonic Zfp831 synonymous SNV uc008ofh.1:c.T153C:p.T51T exonic ENSMUSG00000050600 synonymous SNV ENSMUST00000059452:c.T153C:p.T51T 2qH4 NA NA chr2 174469187 AACxGTG T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 58 3 0 13.860665 0.461538 0.02 -0.113962 7 6 203 149 60 60 0 0 TT 12.03037 40 0 1105 0 KEEP + Zfp831 NO AFB1_2 chr2 181323924 181323924 C A exonic Znf512b nonsynonymous SNV NM_001164597:c.G1052T:p.G351V exonic Znf512b nonsynonymous SNV uc012cms.1:c.G1145T:p.G382V exonic ENSMUSG00000000823 nonsynonymous SNV ENSMUST00000128553:c.G1082T:p.G361V 2qH4 NA NA chr2 181323924 GGGxCGT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077329 0.077336 0.999909 37 0 0 13.498578 0.555556 0.02 -0.078924 4 5 116 138 60 60 0 0 CC 7.181721 24 0 629 0 KEEP - Znf512b YES AFB1_2 chr2 23063569 23063569 C A exonic 4931423N10Rik synonymous SNV NM_027635:c.C238A:p.R80R exonic 4931423N10Rik synonymous SNV uc008iof.2:c.C238A:p.R80R exonic ENSMUSG00000026774 synonymous SNV ENSMUST00000028113:c.C238A:p.R80R 2qA3 NA NA chr2 23063569 GTGxGGC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 90 0 0 20.046038 0.285714 0.02 -0.245395 20 8 484 235 60 60 0 0 CC 14.686534 49 0 1201 0 KEEP + 4931423N10Rik YES AFB1_2 chr2 25232129 25232129 C T UTR3 Sapcd2 NA NA UTR3 "2010317E24Rik,Ang" NA NA UTR3 ENSMUSG00000026955 NA NA 2qA3 NA NA chr2 25232129 CCTxCAG C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 23 2 0 13.145327 0.416667 0.02 -0.105239 7 5 202 143 60 60 0 0 CC 3.308481 11 0 307 0 KEEP + Sapcd2 NO AFB1_2 chr2 29002871 29002871 A G exonic Setx nonsynonymous SNV NM_198033:c.A3847G:p.K1283E exonic Setx nonsynonymous SNV uc008izm.1:c.A3847G:p.K1283E exonic ENSMUSG00000043535 nonsynonymous SNV ENSMUST00000061578:c.A3847G:p.K1283E 2qA3 NA NA chr2 29002871 AGGxAGG A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 89 1 0 13.095507 0.153846 0.02 -0.34196 33 6 922 175 60 60 0 0 AA 13.532169 45 0 1233 0 KEEP + Setx NO AFB1_2 chr2 29924802 29924802 A G intronic Set NA NA intronic Set NA NA intronic ENSMUSG00000054766 NA NA 2qB NA NA chr2 29924802 ATTxAGT A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 102 2 0 9.463186 0.210526 0.02 -0.166621 15 4 422 118 60 60 0 0 AA 22.519616 75 0 1990 0 KEEP + Set NO AFB1_2 chr2 29946802 29946802 G T exonic Zdhhc12 nonsynonymous SNV NM_001037762:c.C767A:p.A256D exonic Zdhhc12 nonsynonymous SNV uc008jbd.1:c.C809A:p.A270D exonic ENSMUSG00000015335 nonsynonymous SNV ENSMUST00000081838:c.C809A:p.A270D 2qB NA NA chr2 29946802 TCAxCCG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 146 0 0 54.697832 0.306667 0.02 1.028808 52 23 1488 638 60 60 0 0 GG 16.844611 56 0 1577 0 KEEP - Zdhhc12 YES AFB1_2 chr2 32542279 32542279 G A exonic Fpgs synonymous SNV NM_010236:c.C949T:p.L317L exonic Fpgs synonymous SNV uc008jgm.2:c.C949T:p.L317L exonic ENSMUSG00000009566 synonymous SNV ENSMUST00000028148:c.C949T:p.L317L 2qB NA NA chr2 32542279 CCAxCCA G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 74 1 0 28.566371 0.588235 0.02 -0.175403 7 10 207 288 60 60 0 0 GG 14.684404 49 0 1349 0 KEEP - Fpgs NO AFB1_2 chr2 32542280 32542280 C G exonic Fpgs nonsynonymous SNV NM_010236:c.G948C:p.W316C exonic Fpgs nonsynonymous SNV uc008jgm.2:c.G948C:p.W316C exonic ENSMUSG00000009566 nonsynonymous SNV ENSMUST00000028148:c.G948C:p.W316C 2qB NA NA chr2 32542280 CAGxCAA C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 73 1 0 29.071256 0.625 0.02 -0.166629 6 10 174 289 60 60 0 0 CC 14.716807 49 0 1327 0 KEEP - Fpgs NO AFB1_2 chr2 34226451 34226451 G C intronic Pbx3 NA NA intronic "Pbx1,Pbx3" NA NA UTR5 ENSMUSG00000038718 NA NA 2qB NA NA chr2 34226451 TTAxCAT G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 79 0 0 12.623924 0.15 0.02 -0.350803 34 6 987 171 60 60 0 0 GG 10.827324 36 0 987 0 KEEP - Pbx3 NO AFB1_2 chr2 35796321 35796321 G A exonic Ttll11 nonsynonymous SNV NM_029774:c.C557T:p.T186M exonic Ttll11 nonsynonymous SNV uc008jky.2:c.C557T:p.T186M exonic ENSMUSG00000026885 nonsynonymous SNV ENSMUST00000028248:c.C557T:p.T186M 2qB NA NA chr2 35796321 TCCxTCA G A AFB1_2_TTAGGC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL UNCOVERED 0.043787 0.043787 0.999998 51 2 0 14.865362 0.714286 0.02 -0.061388 2 5 56 143 60 60 0 0 GG 9.927001 33 0 937 0 KEEP - Ttll11 NO AFB1_2 chr2 35796322 35796322 T A exonic Ttll11 nonsynonymous SNV NM_029774:c.A556T:p.T186S exonic Ttll11 nonsynonymous SNV uc008jky.2:c.A556T:p.T186S exonic ENSMUSG00000026885 nonsynonymous SNV ENSMUST00000028248:c.A556T:p.T186S 2qB NA NA chr2 35796322 CCGxCAT T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999997 55 0 0 14.364376 0.714286 0.02 -0.061384 2 5 58 138 60 60 0 0 TT 9.294459 31 0 826 0 KEEP - Ttll11 NO AFB1_2 chr2 69596360 69596360 C T exonic Ccdc173 nonsynonymous SNV NM_001077684:c.G1462A:p.V488I exonic 4930578N16Rik nonsynonymous SNV uc008jyo.1:c.G1462A:p.V488I exonic ENSMUSG00000070883 nonsynonymous SNV ENSMUST00000094942:c.G1462A:p.V488I 2qC2 NA NA chr2 69596360 TTAxCAT C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 108 0 0 83.803812 0.457143 0.02 1.081443 38 32 1061 895 60 60 0 0 CC 11.127492 37 0 1006 0 KEEP - Ccdc173 NO AFB1_2 chr2 74582325 74582325 T A exonic Hoxd3 nonsynonymous SNV NM_010468:c.T257A:p.L86H exonic Hoxd3 nonsynonymous SNV uc008kee.1:c.T257A:p.L86H exonic ENSMUSG00000079277 nonsynonymous SNV ENSMUST00000047830:c.T257A:p.L86H 2qC3 NA NA chr2 74582325 AACxCAA T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 87 0 0 32.23794 0.545455 0.02 -0.192926 10 12 290 331 60 60 0 0 TT 16.843271 56 0 1557 0 KEEP + Hoxd3 NO AFB1_2 chr2 76680783 76680783 A C intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76680783 AAAxAAA A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 52 0 0 10.185023 0.4 0.02 -0.087697 6 4 173 112 60 60 0 0 AA 11.128733 37 0 1026 0 KEEP - Ttn NO AFB1_2 chr2 91521727 91521727 C T exonic Atg13 synonymous SNV NM_145528:c.G912A:p.T304T exonic Atg13 synonymous SNV uc008kwn.1:c.G912A:p.T304T exonic ENSMUSG00000027244 synonymous SNV ENSMUST00000076803:c.G912A:p.T304T 2qE1 NA NA chr2 91521727 GGGxGTG C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 85 0 0 6.879357 0.3 0.02 -0.087649 7 3 178 81 60 60 0 0 CC 18.322731 61 0 1521 0 KEEP - Atg13 NO AFB1_2 chr3 116215948 116215948 G A upstream Dbt NA NA upstream Dbt NA NA upstream ENSMUSG00000000340 NA NA 3qG1 NA NA chr3 116215948 CTCxTTC G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.519729 0.522161 0.995343 38 0 0 16.851514 0.291667 0.02 -0.210331 17 7 410 198 60 60 0 0 GG 4.141815 14 0 304 0 KEEP + Dbt NO AFB1_2 chr3 142054695 142054695 C T exonic Pdlim5 nonsynonymous SNV NM_001190857:c.G78A:p.M26I exonic Pdlim5 nonsynonymous SNV uc012cyt.1:c.G78A:p.M26I exonic ENSMUSG00000028273 nonsynonymous SNV ENSMUST00000058626:c.G78A:p.M26I 3qH1 "Score=0.928523;Name=No.82395,chr4:145167866" NA chr3 142054695 AGGxATG C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.693584 0.693668 0.999879 65 2 9 7.796736 0.133333 0.02 -0.263101 26 4 757 110 60 25 0 0 CC 6.617796 22 0 622 0 KEEP - Pdlim5 NO AFB1_2 chr3 15738764 15738764 T C exonic LOC100038947 nonsynonymous SNV NM_001173459:c.A275G:p.D92G exonic "LOC100038947,Sirpb1b,Sirpb1c" nonsynonymous SNV uc008oqz.1:c.A194G:p.D65G exonic ENSMUSG00000074677 nonsynonymous SNV ENSMUST00000050623:c.A275G:p.D92G 3qA1 "Score=0.971974;Name=No.81402,chr3:15521912" NA chr3 15738764 ACAxCTG T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 297 9 12 14.207754 0.114754 0.02 1.125287 54 7 1503 203 60 60 0 0 TT 63.130675 210 0 5773 0 KEEP - LOC100038947 NO AFB1_2 chr3 40771332 40771332 C T exonic Larp1b nonsynonymous SNV NM_001040399:c.C263T:p.P88L exonic Larp1b nonsynonymous SNV uc008pca.1:c.C263T:p.P88L exonic ENSMUSG00000037814 nonsynonymous SNV ENSMUST00000048490:c.C263T:p.P88L 3qB NA NA chr3 40771332 GACxAGA C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.582561 0.58293 0.999366 41 2 0 19.610915 0.32 0.02 -0.228007 17 8 486 226 60 37 0 0 CC 5.113365 17 0 475 0 KEEP + Larp1b NO AFB1_2 chr3 51659988 51659988 T C exonic Maml3 synonymous SNV NM_001004176:c.A1476G:p.Q492Q exonic Maml3 synonymous SNV uc008pef.2:c.A1476G:p.Q492Q exonic ENSMUSG00000061143 synonymous SNV ENSMUST00000082294:c.A111G:p.Q37Q 3qC NA NA chr3 51659988 TTGxTGC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 24 0 0 21.285587 0.7 0.02 -0.096471 3 7 84 206 60 60 0 0 TT 3.603562 12 0 303 0 KEEP - Maml3 NO AFB1_2 chr3 57281357 57281357 C A exonic Wwtr1 nonsynonymous SNV NM_001168281:c.G861T:p.Q287H exonic Wwtr1 nonsynonymous SNV uc008phb.2:c.G690T:p.Q230H exonic ENSMUSG00000027803 nonsynonymous SNV ENSMUST00000029380:c.G690T:p.Q230H 3qD NA NA chr3 57281357 CTGxTGC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 85 0 0 12.959104 0.1875 0.02 -0.280639 26 6 753 168 60 60 0 0 CC 14.137002 47 0 1310 0 KEEP - Wwtr1 YES AFB1_2 chr3 63757753 63757753 G T exonic Slc33a1 nonsynonymous SNV NM_001272035:c.C949A:p.L317M exonic Slc33a1 nonsynonymous SNV uc008pkc.1:c.C949A:p.L317M exonic ENSMUSG00000027822 nonsynonymous SNV ENSMUST00000029402:c.C949A:p.L317M 3qE1 NA NA chr3 63757753 TCAxAAG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.993634 1 0.993634 170 1 0 140.517038 0.363057 0.02 3.610938 100 57 2947 1580 60 60 0 0 GG 3.610151 12 0 348 0 KEEP - Slc33a1 YES AFB1_2 chr3 86155300 86155300 G T intronic Lrba NA NA intronic Lrba NA NA intronic ENSMUSG00000028080 NA NA 3qF1 NA NA chr3 86155300 GTCxGTG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139826 0.139832 0.999957 41 0 0 13.145694 0.416667 0.02 -0.105228 7 5 196 143 60 60 0 0 GG 7.818633 26 0 704 0 KEEP + Lrba YES AFB1_2 chr3 89009836 89009836 G A exonic Gba synonymous SNV NM_001077411:c.G651A:p.K217K exonic Gba synonymous SNV uc008pyc.1:c.G651A:p.K217K exonic ENSMUSG00000028048 synonymous SNV ENSMUST00000077367:c.G651A:p.K217K 3qF1 NA NA chr3 89009836 CAAxGGT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 69 0 0 6.592369 0.176471 0.02 -0.149098 14 3 413 86 60 60 0 0 GG 12.934481 43 0 1211 0 KEEP + Gba NO AFB1_2 chr3 89553600 89553600 A G exonic Adar nonsynonymous SNV NM_001038587:c.A2164G:p.T722A exonic Adar nonsynonymous SNV uc008pzy.2:c.A1276G:p.T426A exonic ENSMUSG00000027951 nonsynonymous SNV ENSMUST00000118341:c.A1354G:p.T452A 3qF1 NA NA chr3 89553600 CCCxCGT A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 65 0 0 9.856893 0.2 0.02 -0.219124 20 5 533 129 60 60 0 0 AA 10.224901 34 0 917 0 KEEP + Adar NO AFB1_2 chr3 93251191 93251191 C A exonic Tchh nonsynonymous SNV NM_001163098:c.C4015A:p.R1339S exonic Tchh nonsynonymous SNV uc012cti.1:c.C4015A:p.R1339S exonic ENSMUSG00000052415 nonsynonymous SNV ENSMUST00000064257:c.C4015A:p.R1339S 3qF2.1 NA NA chr3 93251191 CGCxGCC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.850137 0.851984 0.997832 56 0 0 49.076077 0.473684 0.02 -0.333092 20 18 479 519 60 60 0 0 CC 4.806364 16 0 391 0 KEEP + Tchh YES AFB1_2 chr3 94882018 94882018 A G intronic Pip5k1a NA NA intronic Pip5k1a NA NA intronic ENSMUSG00000028126 NA NA 3qF2.1 NA NA chr3 94882018 CAGxCTC A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.934489 0.934492 0.999997 83 0 0 17.591464 0.173913 0.02 -0.403363 38 8 1064 230 60 60 0 0 AA 8.414511 28 0 762 0 KEEP - Pip5k1a NO AFB1_2 chr4 104351342 104351342 C G exonic Dab1 synonymous SNV NM_010014:c.C342G:p.S114S exonic Dab1 synonymous SNV uc008txv.1:c.C342G:p.S114S exonic ENSMUSG00000028519 synonymous SNV ENSMUST00000106825:c.C282G:p.S94S 4qC6 NA NA chr4 104351342 TTCxTAC C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 56 0 0 16.370653 0.666667 0.02 -0.078913 3 6 88 160 60 60 0 0 CC 12.032499 40 0 1139 0 KEEP + Dab1 NO AFB1_2 chr4 106947897 106947897 G A splicing Hspb11(NM_028394:exon4:c.274+1G>A) NA NA splicing "Hspb11(uc008tzn.1:exon4:c.274+1G>A,uc008tzp.1:exon4:c.274+1G>A)" NA NA splicing "ENSMUSG00000063172(ENSMUST00000152717:exon4:c.274+1G>A,ENSMUST00000106749:exon4:c.274+1G>A,ENSMUST00000046558:exon4:c.274+1G>A)" NA NA 4qC7 NA NA chr4 106947897 AAGxTGT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077287 0.077336 0.999366 29 0 0 7.343424 0.333333 0.02 -0.078924 6 3 169 84 60 60 0 0 GG 5.11262 17 0 460 0 KEEP + Hspb11 NO AFB1_2 chr4 117584676 117584676 C A exonic Ipo13 stopgain SNV NM_146152:c.G523T:p.E175X exonic Ipo13 stopgain SNV uc008ujg.1:c.G523T:p.E175X exonic ENSMUSG00000033365 stopgain SNV ENSMUST00000036156:c.G523T:p.E175X 4qD2.1 NA NA chr4 117584676 CCTxGGG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 59 0 0 15.159002 0.3 0.02 -0.175321 14 6 359 176 60 60 0 0 CC 9.312375 31 0 767 0 KEEP - Ipo13 YES AFB1_2 chr4 117815158 117815158 G C exonic Kdm4a nonsynonymous SNV NM_001161823:c.C2671G:p.R891G exonic Kdm4a nonsynonymous SNV uc008ujn.2:c.C2671G:p.R891G exonic ENSMUSG00000033326 nonsynonymous SNV ENSMUST00000050288:c.C2671G:p.R891G 4qD2.1 NA NA chr4 117815158 CACxCTA G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 44 0 0 9.069789 0.190476 0.02 -0.18414 17 4 474 116 60 60 0 0 GG 6.011399 20 0 521 0 KEEP - Kdm4a NO AFB1_2 chr4 119769123 119769123 A G exonic Hivep3 nonsynonymous SNV NM_010657:c.A2030G:p.K677R exonic Hivep3 nonsynonymous SNV uc008una.1:c.A2030G:p.K677R exonic ENSMUSG00000028634 nonsynonymous SNV ENSMUST00000106307:c.A2030G:p.K677R 4qD2.1 NA NA chr4 119769123 AAAxGAC A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 44 2 0 10.570706 0.185185 0.02 -0.236751 22 5 625 138 60 60 0 0 AA 5.113398 17 0 474 0 KEEP + Hivep3 NO AFB1_2 chr4 120726014 120726014 T A intronic Col9a2 NA NA intronic Col9a2 NA NA intronic ENSMUSG00000028626 NA NA 4qD2.2 NA NA chr4 120726014 AGCxTCT T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999863 36 1 0 7.243872 0.333333 0.02 -0.078902 6 3 166 83 60 60 0 0 TT 6.008968 20 0 540 0 KEEP + Col9a2 NO AFB1_2 chr4 128789769 128789769 C G exonic Hpca nonsynonymous SNV NM_001130419:c.G485C:p.G162A exonic Hpca nonsynonymous SNV uc008uwc.1:c.G485C:p.G162A exonic ENSMUSG00000028785 nonsynonymous SNV ENSMUST00000095807:c.G485C:p.G162A 4qD2.2 NA NA chr4 128789769 TTGxCTG C G AFB1_2_TTAGGC 7-E185-R-P_1 0 DBSNP COVERED 0.612391 0.612407 0.999974 71 0 0 15.930378 0.259259 0.02 -0.236759 20 7 572 193 60 60 0 0 CC 11.429196 38 0 1055 0 KEEP - Hpca NO AFB1_2 chr4 138630452 138630452 C A exonic Htr6 synonymous SNV NM_021358:c.G225T:p.V75V exonic Htr6 synonymous SNV uc008vlr.1:c.G225T:p.V75V exonic ENSMUSG00000028747 synonymous SNV ENSMUST00000068036:c.G225T:p.V75V 4qD3 NA NA chr4 138630452 TCCxACC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 95 0 0 21.310731 0.470588 0.02 -0.149081 9 8 255 226 60 60 0 0 CC 19.249386 64 0 1799 0 KEEP - Htr6 YES AFB1_2 chr4 140652967 140652967 A G exonic Spata21 nonsynonymous SNV NM_177867:c.A625G:p.T209A exonic Spata21 nonsynonymous SNV uc008vnv.1:c.A625G:p.T209A exonic ENSMUSG00000045004 nonsynonymous SNV ENSMUST00000051907:c.A625G:p.T209A 4qD3 NA NA chr4 140652967 GTGxCTG A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.717215 0.717315 0.99986 58 1 0 10.741052 0.16129 0.02 -0.271839 26 5 721 143 60 60 0 0 AA 5.714371 19 0 522 0 KEEP + Spata21 NO AFB1_2 chr4 143953791 143953791 T C UTR3 Gm13119 NA NA UTR3 Gm13119 NA NA UTR3 ENSMUSG00000070619 NA NA 4qE1 "Score=0.955248;Name=No.86443,chr4:143551900" NA chr4 143953791 AAGxCTA T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 247 6 86 10.141235 0.056075 0.02 2.45217 101 6 2806 173 60 20 0 0 TT 13.166373 54 1 1495 29 KEEP + Gm13119 NO AFB1_2 chr4 24513459 24513459 G T exonic Mms22l nonsynonymous SNV NM_199467:c.G2803T:p.A935S exonic Mms22l nonsynonymous SNV uc008sdy.1:c.G1978T:p.A660S exonic ENSMUSG00000045751 nonsynonymous SNV ENSMUST00000050446:c.G2683T:p.A895S 4qA3 NA NA chr4 24513459 AGTxCAG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.99623 0.996233 0.999998 105 0 0 23.708761 0.15942 0.02 1.090083 58 11 1686 316 60 60 0 0 GG 9.926082 33 0 922 0 KEEP + Mms22l YES AFB1_2 chr4 28870441 28870441 A G intronic Epha7 NA NA intronic Epha7 NA NA intronic ENSMUSG00000028289 NA NA 4qA4 NA NA chr4 28870441 GTAxACT A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 93 0 0 18.609349 0.368421 0.02 -0.166632 12 7 343 207 60 60 0 0 AA 17.74392 59 0 1626 0 KEEP + Epha7 NO AFB1_2 chr4 88322003 88322003 A G downstream Gm13280 NA NA downstream Gm13280 NA NA UTR3 ENSMUSG00000078355 NA NA 4qC4 NA NA chr4 88322003 CATxCAT A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 77 0 0 22.831013 0.333333 0.02 -0.263074 18 9 495 260 60 60 0 0 AA 14.133157 47 0 1249 0 KEEP - Gm13280 NO AFB1_2 chr5 104035583 104035583 C A exonic Slc10a6 nonsynonymous SNV NM_029415:c.G1100T:p.S367I exonic Slc10a6 nonsynonymous SNV uc008yjp.1:c.G1100T:p.S367I exonic ENSMUSG00000029321 nonsynonymous SNV ENSMUST00000031263:c.G1100T:p.S367I 5qE5 NA NA chr5 104035583 TGGxTAG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.320408 0.322807 0.99257 26 0 0 6.592435 0.176471 0.02 -0.157861 14 3 405 86 60 60 0 0 CC 2.402456 8 0 201 0 KEEP - Slc10a6 YES AFB1_2 chr5 108353716 108353716 A C exonic Fam69a nonsynonymous SNV NM_026062:c.T77G:p.V26G exonic Fam69a nonsynonymous SNV uc008yni.2:c.T77G:p.V26G exonic ENSMUSG00000029270 nonsynonymous SNV ENSMUST00000031198:c.T77G:p.V26G 5qF NA NA chr5 108353716 TTCxCCC A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 189 0 0 10.868324 0.232759 0.02 0.683925 89 27 2235 251 60 60 0 0 AA 13.841769 48 1 1221 5 KEEP - Fam69a NO AFB1_2 chr5 114064271 114064271 C G exonic Cmklr1 nonsynonymous SNV NM_008153:c.G677C:p.G226A exonic Cmklr1 nonsynonymous SNV uc012ebo.1:c.G677C:p.G226A exonic ENSMUSG00000042190 nonsynonymous SNV ENSMUST00000047936:c.G677C:p.G226A 5qF NA NA chr5 114064271 AAGxCGC C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 94 0 0 25.561684 0.23913 0.02 -0.403418 35 11 1010 313 60 60 0 0 CC 13.529626 45 0 1239 0 KEEP - Cmklr1 NO AFB1_2 chr5 116445498 116445498 G T intronic Cit NA NA intronic Cit NA NA intronic ENSMUSG00000029516 NA NA 5qF NA NA chr5 116445498 CGGxGTG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.457701 0.457757 0.999879 49 0 0 39.812991 0.636364 0.02 -0.192918 8 14 221 394 60 60 0 0 GG 6.616769 22 0 605 0 KEEP + Cit YES AFB1_2 chr5 121121534 121121534 C A intronic Rasal1 NA NA intronic Rasal1 NA NA intronic ENSMUSG00000029602 NA NA 5qF NA NA chr5 121121534 CTTxTCT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 45 0 0 12.138661 0.333333 0.02 -0.131552 10 5 297 139 60 60 0 0 CC 8.422158 28 0 797 0 KEEP + Rasal1 YES AFB1_2 chr5 121198574 121198574 G C exonic Oas2 nonsynonymous SNV NM_145227:c.C535G:p.Q179E exonic Oas2 nonsynonymous SNV uc008zhw.2:c.C535G:p.Q179E exonic ENSMUSG00000032690 nonsynonymous SNV ENSMUST00000053909:c.C535G:p.Q179E 5qF NA NA chr5 121198574 ATTxCAG G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 93 1 0 35.086061 0.433333 0.02 -0.263103 17 13 494 378 60 60 0 0 GG 16.53849 55 0 1538 0 KEEP - Oas2 NO AFB1_2 chr5 122907344 122907344 T C exonic Atp2a2 nonsynonymous SNV NM_001110140:c.A2951G:p.K984R exonic Atp2a2 nonsynonymous SNV uc008zli.2:c.A2951G:p.K984R exonic ENSMUSG00000029467 nonsynonymous SNV ENSMUST00000031423:c.A2960G:p.K987R 5qF NA NA chr5 122907344 AACxTGA T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 87 0 0 47.339333 0.64 0.02 -0.219215 9 16 252 468 60 60 0 0 TT 16.541719 55 0 1519 0 KEEP - Atp2a2 NO AFB1_2 chr5 136559946 136559946 A C UTR5 Rasa4 NA NA UTR5 Rasa4 NA NA UTR5 ENSMUSG00000004952 NA NA 5qG2 NA NA chr5 136559946 CGAxCCC A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.999859 58 0 0 6.976006 0.416667 0.02 -0.203922 14 10 383 97 60 60 0 0 AA 5.112871 17 0 465 0 KEEP + Rasa4 NO AFB1_2 chr5 138010626 138010626 T C UTR3 Actl6b NA NA UTR3 Actl6b NA NA UTR3 ENSMUSG00000029712 NA NA 5qG2 NA NA chr5 138010626 CCCxCCC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099086 0.099721 0.993634 26 0 0 6.653295 0.428571 0.02 -0.087313 4 3 107 73 60 60 0 0 TT 3.571677 12 0 285 0 KEEP + Actl6b NO AFB1_2 chr5 144076587 144076587 G C exonic E130309D02Rik nonsynonymous SNV NM_172726:c.C187G:p.P63A exonic E130309D02Rik nonsynonymous SNV uc009ajy.2:c.C187G:p.P63A exonic ENSMUSG00000039244 nonsynonymous SNV ENSMUST00000046418:c.C187G:p.P63A 5qG2 NA NA chr5 144076587 TGGxCTG G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 68 0 0 25.129296 0.5625 0.02 -0.140313 7 9 201 256 60 60 0 0 GG 12.329827 41 0 1123 0 KEEP - E130309D02Rik NO AFB1_2 chr5 144634733 144634733 G T exonic Eif2ak1 nonsynonymous SNV NM_013557:c.G391T:p.A131S exonic Eif2ak1 nonsynonymous SNV uc009aks.1:c.G391T:p.A131S exonic ENSMUSG00000029613 nonsynonymous SNV ENSMUST00000100487:c.G391T:p.A131S 5qG2 NA NA chr5 144634733 TCTxCCA G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 75 0 0 6.87366 0.214286 0.02 -0.122747 11 3 309 86 60 60 0 0 GG 14.136712 47 0 1326 0 KEEP + Eif2ak1 YES AFB1_2 chr5 147766961 147766961 G A exonic Gtf3a synonymous SNV NM_025652:c.G945A:p.E315E exonic Gtf3a synonymous SNV uc009ano.2:c.G942A:p.E314E exonic ENSMUSG00000016503 synonymous SNV ENSMUST00000016647:c.G360A:p.E120E 5qG3 NA NA chr5 147766961 GGAxAGA G A AFB1_2_TTAGGC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.353946 0.353947 0.999997 50 3 0 11.830944 0.263158 0.02 -0.166613 14 5 394 142 60 37 0 0 GG 8.722671 29 0 841 0 KEEP + Gtf3a NO AFB1_2 chr5 34786246 34786246 A C exonic Fam193a nonsynonymous SNV NM_001243123:c.A1906C:p.T636P exonic Fam193a nonsynonymous SNV uc008xch.1:c.A1045C:p.T349P exonic ENSMUSG00000037210 nonsynonymous SNV ENSMUST00000094867:c.A1045C:p.T349P 5qB2 NA NA chr5 34786246 AGCxCCA A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.522089 0.522161 0.999863 49 1 0 8.583958 0.375 0.02 -0.206309 15 9 404 114 60 60 0 0 AA 6.014707 20 0 539 0 KEEP + Fam193a NO AFB1_2 chr5 37717613 37717613 C A exonic Evc nonsynonymous SNV NM_021292:c.G581T:p.R194L exonic Evc nonsynonymous SNV uc008xfp.1:c.G50T:p.R17L exonic ENSMUSG00000029122 nonsynonymous SNV ENSMUST00000031005:c.G581T:p.R194L 5qB3 NA NA chr5 37717613 ACCxGGA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 42 0 0 7.633114 0.375 0.02 -0.070139 5 3 133 85 60 60 0 0 CC 8.410228 28 0 694 0 KEEP - Evc YES AFB1_2 chr5 38619052 38619052 A G intronic Lyar NA NA intronic Lyar NA NA intronic ENSMUSG00000067367 NA NA 5qB3 NA NA chr5 38619052 TTCxTGT A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.993624 0.999991 0.993634 122 1 0 14.743443 0.092593 0.02 2.247667 98 10 2775 244 60 60 0 0 AA 3.608727 12 0 323 0 KEEP + Lyar NO AFB1_2 chr5 53981710 53981710 A T exonic Rbpj nonsynonymous SNV NM_009035:c.A122T:p.H41L exonic Rbpj nonsynonymous SNV uc008xli.1:c.A122T:p.H41L exonic ENSMUSG00000039191 nonsynonymous SNV ENSMUST00000037618:c.A122T:p.H41L 5qC1 NA NA chr5 53981710 CGCxTGC A T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.888312 0.888875 0.999366 61 0 0 44.864715 0.425 0.02 -0.359536 23 17 634 486 60 60 0 0 AA 5.112347 17 0 457 0 KEEP + Rbpj NO AFB1_2 chr5 64041268 64041268 C A UTR5 3110047P20Rik NA NA ncRNA_exonic BC079612 NA NA exonic ENSMUSG00000054714 nonsynonymous SNV ENSMUST00000067917:c.G236T:p.R79L 5qC3.1 NA NA chr5 64041268 CTGxGAA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077168 0.077336 0.997832 26 0 0 10.122165 0.444444 0.02 -0.078911 5 4 139 109 60 60 0 0 CC 4.796505 16 0 390 0 KEEP + 3110047P20Rik YES AFB1_2 chr5 72863180 72863180 A C exonic Corin nonsynonymous SNV NM_001122756:c.T119G:p.V40G exonic Corin nonsynonymous SNV uc008xrj.2:c.T317G:p.V106G exonic ENSMUSG00000005220 nonsynonymous SNV ENSMUST00000005352:c.T317G:p.V106G 5qC3.2 NA NA chr5 72863180 GTCxCCA A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 71 1 0 20.563834 0.347826 0.02 -0.201688 15 8 410 232 60 60 0 0 AA 11.728355 39 0 1051 0 KEEP - Corin NO AFB1_2 chr5 77380715 77380715 G C UTR5 Paics NA NA UTR5 Paics NA NA UTR5 ENSMUSG00000029247 NA NA 5qC3.3 NA NA chr5 77380715 TGGxCTG G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 97 0 0 9.805944 0.166667 0.02 -0.314347 30 6 866 139 60 60 0 0 GG 17.132206 57 0 1550 0 KEEP + Paics NO AFB1_2 chr5 7976859 7976859 C A exonic Steap4 nonsynonymous SNV NM_054098:c.C821A:p.T274K exonic Steap4 nonsynonymous SNV uc008wjg.1:c.C821A:p.T274K exonic ENSMUSG00000012428 nonsynonymous SNV ENSMUST00000115421:c.C821A:p.T274K 5qA1 NA NA chr5 7976859 GCAxAAA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 71 1 0 7.001729 0.25 0.02 -0.148304 12 4 347 90 60 60 1 0 CC 12.934181 43 0 1205 0 KEEP + Steap4 YES AFB1_2 chr5 86962729 86962729 G T exonic Tmprss11f nonsynonymous SNV NM_178730:c.C689A:p.A230D exonic Tmprss11f nonsynonymous SNV uc008xxs.1:c.C689A:p.A230D exonic ENSMUSG00000048764 nonsynonymous SNV ENSMUST00000116553:c.C689A:p.A230D 5qE1 NA NA chr5 86962729 CCAxCCC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.260941 0.260965 0.999909 45 0 0 11.869974 0.3125 0.02 -0.140306 11 5 319 138 60 60 0 0 GG 7.218938 24 0 670 0 KEEP - Tmprss11f YES AFB1_2 chr5 90974375 90974375 T A intronic Afm NA NA intronic Afm NA NA intronic ENSMUSG00000029369 NA NA 5qE1 NA NA chr5 90974375 TTGxATG T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.609555 0.612407 0.995343 44 2 0 25.141761 0.37037 0.02 -0.236756 17 10 465 281 60 60 0 0 TT 4.210129 14 0 375 0 KEEP + Afm NO AFB1_2 chr6 113412739 113412739 A C exonic Il17re nonsynonymous SNV NM_145826:c.A398C:p.K133T exonic Il17re nonsynonymous SNV uc009dgh.1:c.A398C:p.K133T exonic ENSMUSG00000043088 nonsynonymous SNV ENSMUST00000058548:c.A398C:p.K133T 6qE3 NA NA chr6 113412739 AAAxGTG A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 91 0 0 16.30346 0.25 0.02 -0.280595 24 8 696 203 60 60 0 0 AA 15.937424 53 0 1458 0 KEEP + Il17re NO AFB1_2 chr6 118342816 118342816 C A intronic Bms1 NA NA intronic Bms1 NA NA intronic ENSMUSG00000030138 NA NA 6qF1 NA NA chr6 118342816 GCAxCTA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 27 0 0 9.423719 0.307692 0.02 -0.114001 9 4 257 110 60 60 0 0 CC 3.909887 13 0 357 0 KEEP - Bms1 YES AFB1_2 chr6 119889740 119889740 A C intronic Wnk1 NA NA intronic Wnk1 NA NA intronic ENSMUSG00000045962 NA NA 6qF1 NA NA chr6 119889740 AAAxTAG A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 75 0 0 31.253911 0.342857 0.02 -0.306925 23 12 633 353 60 60 0 0 AA 9.623603 32 0 866 0 KEEP - Wnk1 NO AFB1_2 chr6 129134124 129134124 C T intronic Clec2d NA NA intronic Clec2d NA NA intronic ENSMUSG00000030157 NA NA 6qF3 "Score=0.913211;Name=No.94083,chr6:128843612" NA chr6 129134124 TGCxATG C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 62 0 0 9.781303 0.235294 0.02 -0.149092 13 4 373 119 57 25 0 0 CC 12.332307 41 0 1147 0 KEEP + Clec2d NO AFB1_2 chr6 129653573 129653573 G T exonic Klri1 nonsynonymous SNV NM_001012520:c.C263A:p.A88D exonic Klri1 nonsynonymous SNV uc009egq.1:c.C263A:p.A88D exonic ENSMUSG00000067610 nonsynonymous SNV ENSMUST00000088046:c.C263A:p.A88D 6qF3 NA NA chr6 129653573 AAGxCTC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 68 2 0 14.106769 0.285714 0.02 -0.184167 15 6 435 167 60 60 0 0 GG 12.331812 41 0 1133 0 KEEP - Klri1 YES AFB1_2 chr6 130102452 130102452 C T ncRNA_intronic Klra14-ps NA NA ncRNA_intronic Ly49A NA NA ncRNA_intronic ENSMUSG00000072721 NA NA 6qF3 "Score=0.927638;Name=No.94097,chr6:130012765" NA chr6 130102452 AAAxTCA C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 114 19 5 11.231773 0.571429 0.02 -0.061382 3 4 81 114 20 25 0 0 CC 27.655236 92 0 2491 0 KEEP - Klra14-ps NO AFB1_2 chr6 130102463 130102463 G C ncRNA_exonic Klra14-ps NA NA exonic Klra14 nonsynonymous SNV uc012etu.1:c.C650G:p.S217C ncRNA_exonic ENSMUSG00000072721 NA NA 6qF3 "Score=0.927638;Name=No.94097,chr6:130012765" NA chr6 130102463 TTAxATT G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 131 22 3 10.385077 0.4 0.02 -0.087702 6 4 176 114 37 25 0 0 GG 29.764035 99 0 2822 0 KEEP - Klra14-ps NO AFB1_2 chr6 132986224 132986224 C A exonic Tas2r103 nonsynonymous SNV NM_053211:c.G896T:p.W299L exonic Tas2r103 nonsynonymous SNV uc012eug.1:c.G896T:p.W299L exonic ENSMUSG00000030196 nonsynonymous SNV ENSMUST00000032317:c.G896T:p.W299L 6qG1 NA NA chr6 132986224 AGCxACA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.970547 0.973965 0.99649 74 2 0 132.14623 0.796296 0.02 1.319952 11 43 319 1235 60 60 0 0 CC 4.512269 15 0 427 0 KEEP - Tas2r103 YES AFB1_2 chr6 29364861 29364861 C G exonic Ccdc136 nonsynonymous SNV NM_001201378:c.C1546G:p.Q516E exonic Ccdc136 nonsynonymous SNV uc009bdl.1:c.C505G:p.Q169E exonic ENSMUSG00000029769 nonsynonymous SNV ENSMUST00000031781:c.C1672G:p.Q558E 6qA3.3 NA NA chr6 29364861 CTGxAGA C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019911 0.019982 0.99649 22 0 0 13.506202 1 0.02 -0.03508 0 4 0 116 0 60 0 0 CC 4.511415 15 0 413 0 KEEP + Ccdc136 NO AFB1_2 chr6 32001574 32001574 C T UTR5 1700012A03Rik NA NA UTR5 1700012A03Rik NA NA UTR5 ENSMUSG00000029766 NA NA 6qA3.3 NA NA chr6 32001574 CACxTCC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 55 0 0 6.561729 0.15 0.02 -0.175397 17 3 488 88 60 60 0 0 CC 9.625537 32 0 896 0 KEEP + 1700012A03Rik NO AFB1_2 chr6 39068434 39068434 G C upstream "4930599N23Rik,Parp12" NA NA upstream "AK016417,Parp12" NA NA ncRNA_exonic ENSMUSG00000073144 NA NA 6qB1 NA NA chr6 39068434 GGGxCGC G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.711964 0.717315 0.99254 42 1 0 7.936508 0.129032 0.02 -0.27174 27 4 756 112 60 60 0 0 GG 2.703511 9 0 237 0 KEEP NA 4930599N23Rik NO AFB1_2 chr6 47469184 47469184 G A exonic Cul1 synonymous SNV NM_012042:c.G1647A:p.Q549Q exonic Cul1 synonymous SNV uc009bsz.1:c.G1647A:p.Q549Q exonic ENSMUSG00000029686 synonymous SNV ENSMUST00000031697:c.G1647A:p.Q549Q 6qB2.3 NA NA chr6 47469184 GCAxTCT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 103 0 0 21.056198 0.380952 0.02 -0.192932 13 8 365 233 60 60 0 0 GG 18.887316 63 0 1736 0 KEEP + Cul1 NO AFB1_2 chr6 47469185 47469185 T G exonic Cul1 nonsynonymous SNV NM_012042:c.T1648G:p.S550A exonic Cul1 nonsynonymous SNV uc009bsz.1:c.T1648G:p.S550A exonic ENSMUSG00000029686 nonsynonymous SNV ENSMUST00000031697:c.T1648G:p.S550A 6qB2.3 NA NA chr6 47469185 CAGxCTT T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 101 0 0 20.956001 0.380952 0.02 -0.192935 13 8 370 232 60 60 0 0 TT 18.645754 62 0 1696 0 KEEP + Cul1 NO AFB1_2 chr6 55447020 55447020 A G exonic Adcyap1r1 nonsynonymous SNV NM_001025372:c.A1262G:p.N421S exonic Adcyap1r1 nonsynonymous SNV uc009cau.1:c.A1262G:p.N421S exonic ENSMUSG00000029778 nonsynonymous SNV ENSMUST00000172084:c.A1199G:p.N400S 6qB3 NA NA chr6 55447020 TGAxCCG A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 0.999999 61 0 0 11.93899 0.333333 0.02 -0.131517 10 5 273 137 60 60 0 0 AA 10.801544 36 0 973 0 KEEP + Adcyap1r1 NO AFB1_2 chr6 5960485 5960485 G A exonic Dync1i1 nonsynonymous SNV NM_001191023:c.G1672A:p.A558T exonic Dync1i1 nonsynonymous SNV uc009awm.2:c.G1621A:p.A541T exonic ENSMUSG00000029757 nonsynonymous SNV ENSMUST00000115554:c.G1621A:p.A541T 6qA1 NA NA chr6 5960485 GGAxCAT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 47 0 0 20.569749 0.4 0.02 -0.175399 12 8 353 226 60 60 0 0 GG 6.918788 23 0 654 0 KEEP + Dync1i1 NO AFB1_2 chr6 67789816 67789816 T A intergenic "4930515G16Rik(dist=274123),Rprl1(dist=1487115)" NA NA ncRNA_intronic abParts NA NA exonic ENSMUSG00000076507 nonsynonymous SNV ENSMUST00000103308:c.T30A:p.F10L 6qC1 "Score=0.939088;Name=No.93770,chr6:67999421" NA chr6 67789816 TTTxGGC T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 308 8 1 14.302612 0.25 0.02 -0.210481 18 6 519 173 60 60 0 0 TT 67.368587 224 0 6129 0 KEEP NA 4930515G16Rik NO AFB1_2 chr6 72288348 72288348 C G intronic Usp39 NA NA intronic Usp39 NA NA intronic ENSMUSG00000056305 NA NA 6qC1 NA NA chr6 72288348 TCAxAAA C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999997 45 2 0 8.324637 0.5 0.02 -0.052621 3 3 87 87 60 60 0 0 CC 9.32221 31 0 849 0 KEEP - Usp39 NO AFB1_2 chr6 90976967 90976967 G C exonic Nup210 nonsynonymous SNV NM_018815:c.C4293G:p.D1431E exonic Nup210 nonsynonymous SNV uc009cxt.1:c.C1821G:p.D607E exonic ENSMUSG00000030091 nonsynonymous SNV ENSMUST00000032179:c.C4293G:p.D1431E 6qD1 NA NA chr6 90976967 GAAxTCA G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119541 0.120436 0.99257 19 0 0 17.47032 0.545455 0.02 -0.096476 5 6 145 179 60 60 0 0 GG 2.405266 8 0 208 0 KEEP - Nup210 NO AFB1_2 chr6 97879791 97879791 C T intronic Mitf NA NA intronic Mitf NA NA intronic ENSMUSG00000035158 NA NA 6qD3 NA NA chr6 97879791 CCCxTAG C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 56 0 0 32.221943 0.611111 0.02 -0.157866 7 11 203 322 60 60 0 0 CC 9.925176 33 0 920 0 KEEP + Mitf NO AFB1_2 chr7 108727452 108727452 G A exonic Art2b synonymous SNV NM_019915:c.C792T:p.S264S exonic Art2b synonymous SNV uc009ioy.1:c.C792T:p.S264S exonic ENSMUSG00000030651 synonymous SNV ENSMUST00000063920:c.C792T:p.S264S 7qE3 NA NA chr7 108727452 TCTxGAT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 85 0 8 11.567189 0.277778 0.02 -0.157858 13 5 380 138 36 36 0 0 GG 12.065194 50 1 1421 28 KEEP - Art2b NO AFB1_2 chr7 109559820 109559820 C G exonic Stim1 nonsynonymous SNV NM_009287:c.C555G:p.S185R exonic Stim1 nonsynonymous SNV uc009irm.1:c.C555G:p.S185R exonic ENSMUSG00000030987 nonsynonymous SNV ENSMUST00000033289:c.C555G:p.S185R 7qE3 NA NA chr7 109559820 GAGxCAC C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 72 0 0 14.706985 0.285714 0.02 -0.18417 15 6 432 173 60 60 0 0 CC 12.933354 43 0 1197 0 KEEP + Stim1 NO AFB1_2 chr7 116604298 116604298 G A exonic Trim66 synonymous SNV NM_001170912:c.C2394T:p.P798P exonic Trim66 synonymous SNV uc009jdq.2:c.C2394T:p.P798P exonic ENSMUSG00000031026 synonymous SNV ENSMUST00000033339:c.C2088T:p.P696P 7qE3 NA NA chr7 116604298 CACxGGC G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 114 1 0 14.155296 0.222222 0.02 -0.236635 21 6 530 175 60 60 0 0 GG 22.222898 74 0 1783 0 KEEP - Trim66 NO AFB1_2 chr7 120476284 120476284 T C exonic Btbd10 nonsynonymous SNV NM_133700:c.A424G:p.S142G exonic Btbd10 nonsynonymous SNV uc009jhl.1:c.A424G:p.S142G exonic ENSMUSG00000038187 nonsynonymous SNV ENSMUST00000117577:c.A448G:p.S150G 7qF1 NA NA chr7 120476284 AGCxACC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 130 1 1 8.714579 0.166667 0.02 -0.21048 20 4 577 115 60 60 0 0 TT 26.139368 87 0 2365 0 KEEP - Btbd10 NO AFB1_2 chr7 130267888 130267888 C G intronic Tnrc6a NA NA intronic Tnrc6a NA NA intronic ENSMUSG00000052707 NA NA 7qF3 NA NA chr7 130267888 GAGxCAG C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.99986 38 0 0 7.002267 0.25 0.02 -0.10518 9 3 238 85 60 60 0 0 CC 5.652008 19 0 499 0 KEEP + Tnrc6a NO AFB1_2 chr7 133343402 133343402 G A intronic Xpo6 NA NA intronic Xpo6 NA NA intronic ENSMUSG00000000131 NA NA 7qF3 NA NA chr7 133343402 CTGxACC G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 36 0 0 19.040885 0.538462 0.02 -0.114006 6 7 176 196 60 60 0 0 GG 5.112093 17 0 466 0 KEEP - Xpo6 NO AFB1_2 chr7 133641099 133641099 C A exonic Atxn2l nonsynonymous SNV NM_183020:c.G1112T:p.R371L exonic Atxn2l nonsynonymous SNV uc009jrr.1:c.G353T:p.R118L exonic ENSMUSG00000032637 nonsynonymous SNV ENSMUST00000040202:c.G1112T:p.R371L 7qF3 NA NA chr7 133641099 GGGxGCC C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 40 0 0 12.539968 0.333333 0.02 -0.13151 10 5 266 143 60 60 0 0 CC 7.506801 25 0 590 0 KEEP - Atxn2l YES AFB1_2 chr7 135148249 135148249 C T exonic Trim72 synonymous SNV NM_001079932:c.C252T:p.G84G exonic Trim72 synonymous SNV uc009jxv.2:c.C252T:p.G84G exonic ENSMUSG00000042828 synonymous SNV ENSMUST00000081042:c.C252T:p.G84G 7qF3 NA NA chr7 135148249 AGGxCAC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 126 0 0 6.753148 1 0.02 -0.01754 0 2 0 58 0 60 0 0 CC 30.630539 102 0 2784 0 KEEP + Trim72 NO AFB1_2 chr7 135347326 135347326 A T intronic Itgad NA NA intronic Itgad NA NA intronic ENSMUSG00000070369 NA NA 7qF3 NA NA chr7 135347326 CAGxTCT A T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 43 0 0 14.969156 0.352941 0.02 -0.149077 11 6 308 169 60 37 0 0 AA 6.891411 23 0 612 0 KEEP + Itgad NO AFB1_2 chr7 135415598 135415598 G A exonic Slc5a2 nonsynonymous SNV NM_133254:c.G1910A:p.R637Q exonic Slc5a2 nonsynonymous SNV uc009jyu.1:c.G1910A:p.R637Q exonic ENSMUSG00000030781 nonsynonymous SNV ENSMUST00000118169:c.G1910A:p.R637Q 7qF3 NA NA chr7 135415598 GGCxGCT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 72 0 0 12.524194 0.357143 0.02 -0.122714 9 5 224 141 60 60 0 0 GG 16.2321 54 0 1422 0 KEEP + Slc5a2 NO AFB1_2 chr7 138540357 138540357 C G UTR5 Ikzf5 NA NA UTR5 Ikzf5 NA NA UTR5 ENSMUSG00000040167 NA NA 7qF3 NA NA chr7 138540357 AGTxTGT C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 59 1 1 6.552865 1 0.02 -0.017538 0 2 0 56 0 60 0 0 CC 16.237785 54 0 1539 0 KEEP - Ikzf5 NO AFB1_2 chr7 149687684 149687684 C T ncRNA_intronic Gm14492 NA NA intronic "Gm14492,Tnnt3" NA NA intronic "ENSMUSG00000043795,ENSMUSG00000061723" NA NA 7qF5 NA NA chr7 149687684 CTCxCCC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 74 0 0 8.562257 0.217391 0.02 -0.384897 18 5 487 114 60 60 0 1 CC 8.354137 28 0 722 0 KEEP - Gm14492 NO AFB1_2 chr7 150951067 150951067 G T exonic Mrgprg nonsynonymous SNV NM_203492:c.C212A:p.T71K exonic Mrgprg nonsynonymous SNV uc009kpy.1:c.C212A:p.T71K exonic ENSMUSG00000050276 nonsynonymous SNV ENSMUST00000058092:c.C212A:p.T71K 7qF5 NA NA chr7 150951067 ATCxTAG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 70 0 0 9.824699 0.307692 0.02 -0.113967 9 4 234 114 60 60 0 0 GG 14.676184 49 0 1197 0 KEEP - Mrgprg YES AFB1_2 chr7 17788957 17788957 T G UTR5 Psg29 NA NA UTR5 Psg29 NA NA UTR5 ENSMUSG00000023159 NA NA 7qA2 NA NA chr7 17788957 TGGxGCC T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 70 1 0 7.219756 0.666667 0.02 -0.084066 3 6 67 72 60 60 0 0 TT 14.912482 52 1 1305 6 KEEP + Psg29 NO AFB1_2 chr7 20334620 20334620 C G exonic Pvrl2 nonsynonymous SNV NM_001159724:c.G32C:p.R11T exonic Pvrl2 nonsynonymous SNV uc009fnd.2:c.G32C:p.R11T exonic ENSMUSG00000062300 nonsynonymous SNV ENSMUST00000075447:c.G32C:p.R11T 7qA3 NA NA chr7 20334620 AATxTGG C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 139 2 0 39.064597 0.333333 0.02 -0.420932 32 16 917 447 60 60 0 0 CC 19.991274 71 1 2017 12 KEEP - Pvrl2 NO AFB1_2 chr7 28960018 28960018 G T exonic Fbl nonsynonymous SNV NM_007991:c.G317T:p.R106L exonic Fbl nonsynonymous SNV uc009fxy.1:c.G317T:p.R106L exonic ENSMUSG00000046865 nonsynonymous SNV ENSMUST00000042405:c.G317T:p.R106L 7qA3 NA NA chr7 28960018 GTCxCGG G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 69 4 5 11.070666 0.185185 0.02 -0.245438 22 5 569 143 60 20 0 0 GG 8.416369 28 0 723 0 KEEP + Fbl YES AFB1_2 chr7 31018166 31018166 T G intronic Polr2i NA NA intronic Polr2i NA NA intronic ENSMUSG00000019738 NA NA 7qB1 NA NA chr7 31018166 GGGxAGG T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 63 0 0 7.499341 0.571429 0.02 -0.122244 3 4 84 77 60 60 0 0 TT 8.92129 38 4 745 20 KEEP + Polr2i NO AFB1_2 chr7 31018172 31018172 T G intronic Polr2i NA NA intronic Polr2i NA NA intronic ENSMUSG00000019738 NA NA 7qB1 NA NA chr7 31018172 GGGxGGG T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 66 0 0 19.005834 0.875 0.02 -0.14885 1 7 30 170 60 60 0 0 TT 10.399909 42 2 915 18 KEEP + Polr2i NO AFB1_2 chr7 31501048 31501048 T G intronic Atp4a NA NA intronic "Atp4a,Gapdhs" NA NA intronic ENSMUSG00000005553 NA NA 7qB1 NA NA chr7 31501048 GGGxGGG T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 36 0 0 6.387456 0.6 0.02 -0.112002 4 6 81 66 60 60 0 0 TT 2.638059 15 2 374 16 KEEP + Atp4a NO AFB1_2 chr7 31502398 31502398 C A intronic Atp4a NA NA intronic "Atp4a,Gapdhs" NA NA intronic ENSMUSG00000005553 NA NA 7qB1 NA NA chr7 31502398 TGGxGCT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139529 0.139832 0.997832 31 0 0 12.345109 0.416667 0.02 -0.1052 7 5 186 135 60 60 0 0 CC 4.744226 16 0 370 0 KEEP + Atp4a YES AFB1_2 chr7 46663929 46663929 C T exonic Gm5114 synonymous SNV NM_177890:c.G1635A:p.R545R exonic Gm5114 synonymous SNV uc009gkz.1:c.G1635A:p.R545R exonic ENSMUSG00000053742 synonymous SNV ENSMUST00000031488:c.G1635A:p.R545R 7qB3 "Score=0.96265;Name=No.101122,chr7:39348778" NA chr7 46663929 GTTxCTC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 246 4 23 8.39273 0.148148 0.02 -0.236782 23 4 665 114 57 29 0 0 CC 51.732769 172 0 4829 0 KEEP - Gm5114 NO AFB1_2 chr7 52968731 52968731 G A exonic Sphk2 nonsynonymous SNV NM_001172561:c.C305T:p.A102V exonic Sphk2 nonsynonymous SNV uc009gwt.2:c.C305T:p.A102V exonic ENSMUSG00000057342 nonsynonymous SNV ENSMUST00000072836:c.C305T:p.A102V 7qB4 NA NA chr7 52968731 TCCxCCC G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 59 0 0 7.444301 0.333333 0.02 -0.087605 6 3 152 85 60 60 0 0 GG 13.178305 44 0 1107 0 KEEP - Sphk2 NO AFB1_2 chr7 53082982 53082982 C T exonic Grwd1 nonsynonymous SNV NM_153419:c.G739A:p.G247S exonic Grwd1 nonsynonymous SNV uc009gxj.2:c.G427A:p.G143S exonic ENSMUSG00000053801 nonsynonymous SNV ENSMUST00000098448:c.G427A:p.G143S 7qB4 NA NA chr7 53082982 CACxCTC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 165 1 0 13.774605 0.5 0.02 -0.087694 5 5 140 144 60 60 0 0 CC 39.083639 130 0 3595 0 KEEP - Grwd1 NO AFB1_2 chr7 54069467 54069467 A G intronic Gtf2h1 NA NA intronic Gtf2h1 NA NA intronic ENSMUSG00000006599 NA NA 7qB4 NA NA chr7 54069467 AATxCCA A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 73 2 0 6.350382 0.12 0.02 -0.219222 22 3 607 89 60 60 0 0 AA 12.023078 40 0 1054 0 KEEP + Gtf2h1 NO AFB1_2 chr7 54254201 54254201 G C exonic Spty2d1 nonsynonymous SNV NM_175318:c.C349G:p.Q117E exonic Spty2d1 nonsynonymous SNV uc009gzx.2:c.C349G:p.Q117E exonic ENSMUSG00000049516 nonsynonymous SNV ENSMUST00000061639:c.C349G:p.Q117E 7qB4 NA NA chr7 54254201 CCTxGTT G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 200 1 0 15.501052 0.304348 0.02 -0.201677 16 7 462 183 60 60 0 0 GG 43.31639 144 0 4079 0 KEEP - Spty2d1 NO AFB1_2 chr7 63463113 63463113 G A exonic Herc2 nonsynonymous SNV NM_010418:c.G12073A:p.E4025K exonic "Herc2,rjs" nonsynonymous SNV uc009hdx.1:c.G1204A:p.E402K exonic ENSMUSG00000030451 nonsynonymous SNV ENSMUST00000041015:c.G11851A:p.E3951K 7qB5 NA NA chr7 63463113 ACAxAGT G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 50 0 0 19.711352 0.32 0.02 -0.219226 17 8 487 227 60 60 0 0 GG 6.295462 21 0 563 0 KEEP + Herc2 NO AFB1_2 chr7 86238861 86238861 T C intronic Acan NA NA intronic Acan NA NA intronic ENSMUSG00000030607 NA NA 7qD3 NA NA chr7 86238861 TGTxCCC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.229142 0.229173 0.999863 41 0 0 13.022882 0.357143 0.02 -0.131547 9 5 254 146 60 60 0 0 TT 6.015453 20 0 551 0 KEEP + Acan NO AFB1_2 chr7 86238862 86238862 C T intronic Acan NA NA intronic Acan NA NA intronic ENSMUSG00000030607 NA NA 7qD3 NA NA chr7 86238862 GTTxCCC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.229142 0.229173 0.999863 41 0 0 12.722515 0.357143 0.02 -0.131552 9 5 263 143 60 60 0 0 CC 6.016284 20 0 568 0 KEEP + Acan NO AFB1_2 chr7 86820280 86820280 G A exonic Ticrr nonsynonymous SNV NM_029835:c.G1667A:p.R556H exonic 5730590G19Rik nonsynonymous SNV uc009hyp.1:c.G1667A:p.R556H exonic ENSMUSG00000046591 nonsynonymous SNV ENSMUST00000035977:c.G1667A:p.R556H 7qD3 NA NA chr7 86820280 AACxCAG G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 54 0 0 7.45509 0.428571 0.02 -0.061366 4 3 105 81 60 60 0 0 GG 11.721557 39 0 993 0 KEEP + Ticrr NO AFB1_2 chr7 88696832 88696832 C T intronic Fsd2 NA NA intronic Fsd2 NA NA intronic ENSMUSG00000038663 NA NA 7qD3 NA NA chr7 88696832 GACxGAT C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 57 2 0 16.167864 0.461538 0.02 -0.113942 7 6 164 172 60 60 0 0 CC 9.315684 31 0 787 0 KEEP - Fsd2 NO AFB1_2 chr7 89796973 89796973 A C UTR5 Fam154b NA NA UTR5 Fam154b NA NA UTR5 ENSMUSG00000038570 NA NA 7qD3 NA NA chr7 89796973 CTTxGGC A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 84 0 0 6.953373 1 0.02 -0.035081 0 2 0 60 0 60 0 1 AA 18.031137 60 0 1644 0 KEEP - Fam154b NO AFB1_2 chr7 97325264 97325264 A C exonic Picalm synonymous SNV NM_001252520:c.A1113C:p.A371A exonic Picalm synonymous SNV uc009igw.1:c.A756C:p.A252A exonic ENSMUSG00000039361 synonymous SNV ENSMUST00000049537:c.A1113C:p.A371A 7qE1 NA NA chr7 97325264 TGCxCCA A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 65 0 0 6.495233 0.5 0.02 -0.08681 5 5 132 72 60 60 0 0 AA 10.927779 41 2 1078 12 KEEP + Picalm NO AFB1_2 chr8 112791360 112791360 C T intronic Hydin NA NA intronic Hydin NA NA ncRNA_exonic ENSMUSG00000090569 NA NA 8qE1 NA NA chr8 112791360 GTGxGCA C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 232 2 0 13.646413 0.206897 0.02 -0.271676 23 6 560 172 60 60 0 0 CC 50.114414 167 0 4002 0 KEEP + Hydin NO AFB1_2 chr8 19934267 19934267 C A UTR3 "Gm15319,Gm21119" NA NA UTR3 Gm15319 NA NA ncRNA_UTR3 ENSMUSG00000074449 NA NA 8qA1.3 "Score=0.989257;Name=No.104285,chr8_random:819725" NA chr8 19934267 GGTxACA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.995336 0.999993 0.995343 159 3 32 18.535591 0.090909 0.02 2.52405 100 10 2930 283 35 37 0 1 CC 6.015035 20 0 554 0 KEEP NA Gm15319 YES AFB1_2 chr8 19934269 19934269 C A UTR3 "Gm15319,Gm21119" NA NA UTR3 Gm15319 NA NA ncRNA_UTR3 ENSMUSG00000074449 NA NA 8qA1.3 "Score=0.989257;Name=No.104285,chr8_random:819725" NA chr8 19934269 TCAxATT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.996483 0.999993 0.99649 157 2 29 19.232678 0.090909 0.02 2.425748 100 10 2888 290 35 37 0 1 CC 6.615532 22 0 588 0 KEEP NA Gm15319 YES AFB1_2 chr8 20020175 20020175 G A ncRNA_exonic "2610005L07Rik,6820431F20Rik" NA NA exonic Gm10348 synonymous SNV uc009lbg.1:c.C100T:p.L34L ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020175 GCAxGTC G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 283 5 53 12.568963 0.157895 0.02 -0.368301 32 6 931 169 57 36 0 0 GG 61.338219 204 0 5771 0 KEEP NA 2610005L07Rik NO AFB1_2 chr8 22676726 22676726 T A exonic "Gm14850,Gm21498" stoploss SNV NM_001177522:c.T280A:p.X94R exonic Gm14850 stoploss SNV uc012gax.1:c.T280A:p.X94R exonic ENSMUSG00000065956 stoploss SNV ENSMUST00000084040:c.T280A:p.X94R 8qA2 "Score=0.973598;Name=No.103957,chr8:22195082" NA chr8 22676726 AGCxGAA T A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 486 3 187 107.380972 0.211982 0.02 5.271113 171 46 4905 1341 36 29 0 0 TT 24.362966 81 0 2239 0 KEEP NA Gm14850 NO AFB1_2 chr8 32305706 32305706 T G exonic Fut10 nonsynonymous SNV NM_001012517:c.T26G:p.L9R exonic Fut10 nonsynonymous SNV uc009ljj.1:c.T26G:p.L9R exonic ENSMUSG00000046152 nonsynonymous SNV ENSMUST00000066173:c.T26G:p.L9R 8qA3 NA NA chr8 32305706 AGCxTCT T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 118 0 0 15.733158 0.333333 0.02 -0.184136 14 7 402 182 60 60 0 0 TT 23.15992 77 0 2141 0 KEEP + Fut10 NO AFB1_2 chr8 3598994 3598994 G C intronic Camsap3 NA NA intronic 2310057J16Rik NA NA intronic ENSMUSG00000044433 NA NA 8qA1.1 NA NA chr8 3598994 GAGxCTA G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 65 0 0 8.124424 0.5 0.02 -0.052619 3 3 87 85 60 60 0 0 GG 14.780415 53 1 1418 10 KEEP + Camsap3 NO AFB1_2 chr8 37574871 37574871 C A exonic 6430573F11Rik synonymous SNV NM_176952:c.C573A:p.P191P exonic "6430573F11Rik,Kiaa1456" synonymous SNV uc009llp.1:c.C312A:p.P104P exonic ENSMUSG00000039620 synonymous SNV ENSMUST00000171777:c.C573A:p.P191P 8qA4 NA NA chr8 37574871 CCCxGGT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 78 0 0 32.723151 0.428571 0.02 -0.245483 16 12 413 353 60 60 0 0 CC 14.572346 49 0 1155 0 KEEP + 6430573F11Rik YES AFB1_2 chr8 46440988 46440988 T G exonic Fam149a nonsynonymous SNV NM_153535:c.A704C:p.D235A exonic Fam149a nonsynonymous SNV uc009lox.1:c.A704C:p.D235A exonic ENSMUSG00000070044 nonsynonymous SNV ENSMUST00000093526:c.A704C:p.D235A 8qB1.1 NA NA chr8 46440988 TTAxCAA T G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 84 0 0 6.595194 0.142857 0.02 -0.183905 18 3 485 89 60 60 0 0 TT 12.664547 49 1 1340 19 KEEP - Fam149a NO AFB1_2 chr8 48499091 48499091 G T intergenic "Stox2(dist=61389),Trappc11(dist=76391)" NA NA intergenic "Stox2(dist=61389),D030016E14Rik(dist=76391)" NA NA exonic ENSMUSG00000060559 synonymous SNV ENSMUST00000074466:c.G609T:p.R203R 8qB1.1 NA NA chr8 48499091 GCGxGAC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 0.999998 58 0 0 6.479875 0.1875 0.02 -0.14029 13 3 364 84 60 60 0 0 GG 10.223749 34 0 945 0 KEEP NA Stox2 YES AFB1_2 chr8 63490967 63490967 G T exonic Nek1 nonsynonymous SNV NM_175089:c.G292T:p.A98S exonic Nek1 nonsynonymous SNV uc012ged.1:c.G55T:p.A19S exonic ENSMUSG00000031644 nonsynonymous SNV ENSMUST00000034065:c.G292T:p.A98S 8qB3.1 NA NA chr8 63490967 GGCxCTC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.990645 0.996233 0.994391 86 0 0 156.768579 0.753623 0.02 1.287114 17 52 463 1487 60 60 0 0 GG 3.909629 13 0 351 0 KEEP + Nek1 YES AFB1_2 chr8 63578781 63578781 G T exonic Nek1 stopgain SNV NM_175089:c.G2464T:p.E822X exonic Nek1 stopgain SNV uc012gef.1:c.G2389T:p.E797X exonic ENSMUSG00000031644 stopgain SNV ENSMUST00000172204:c.G2389T:p.E797X 8qB3.1 NA NA chr8 63578781 ACTxAAA G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999248 0.999317 0.999931 111 0 0 17.833352 0.111111 0.02 0.984823 72 9 2122 258 60 60 0 0 GG 7.520905 25 0 719 0 KEEP + Nek1 YES AFB1_2 chr8 74457156 74457156 G T exonic Zfp617 nonsynonymous SNV NM_133358:c.G1430T:p.C477F exonic Zfp617 nonsynonymous SNV uc009mez.2:c.G1430T:p.C477F exonic ENSMUSG00000066880 nonsynonymous SNV ENSMUST00000093438:c.G1427T:p.C476F 8qB3.3 "Score=0.99492;Name=No.3745,chr1:87909975" NA chr8 74457156 TGTxTAA G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.845654 0.851984 0.99257 46 0 0 21.262196 0.236842 0.02 -0.333257 29 9 833 260 60 60 0 0 GG 2.406567 8 0 228 0 KEEP + Zfp617 YES AFB1_2 chr8 74991813 74991813 C T exonic Cherp synonymous SNV NM_138585:c.G1005A:p.Q335Q exonic Cherp synonymous SNV uc009mga.1:c.G1005A:p.Q335Q exonic ENSMUSG00000052488 synonymous SNV ENSMUST00000079510:c.G1005A:p.Q335Q 8qB3.3 NA NA chr8 74991813 TTGxTGC C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.194853 0.196312 0.99257 23 0 0 6.873128 0.214286 0.02 -0.122787 11 3 326 86 60 60 0 0 CC 2.393944 8 0 201 0 KEEP - Cherp NO AFB1_2 chr8 87412493 87412493 A C exonic Gcdh nonsynonymous SNV NM_008097:c.T1203G:p.N401K exonic Gcdh nonsynonymous SNV uc009mny.1:c.T1176G:p.N392K exonic ENSMUSG00000003809 nonsynonymous SNV ENSMUST00000003907:c.T1176G:p.N392K 8qC3 NA NA chr8 87412493 CCCxTTT A C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 113 0 0 47.082707 0.9375 0.02 -0.139998 1 15 29 416 60 60 0 0 AA 22.840785 76 0 2038 0 KEEP - Gcdh NO AFB1_2 chr9 106127095 106127095 G T exonic Tlr9 nonsynonymous SNV NM_031178:c.G1253T:p.R418L exonic Tlr9 nonsynonymous SNV uc009rjh.1:c.G1253T:p.R418L exonic ENSMUSG00000045322 nonsynonymous SNV ENSMUST00000062241:c.G1253T:p.R418L 9qF1 NA NA chr9 106127095 TTCxCTT G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 97 0 0 14.765776 0.272727 0.02 -0.192902 16 6 440 175 60 60 0 0 GG 19.224363 64 0 1550 0 KEEP + Tlr9 YES AFB1_2 chr9 107447814 107447814 T C intronic Nprl2 NA NA intronic Nprl2 NA NA intronic ENSMUSG00000010057 NA NA 9qF1 NA NA chr9 107447814 CCCxGCC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 130 0 0 6.525883 0.461538 0.02 -0.112148 7 6 189 77 60 60 0 0 TT 29.349243 98 0 2641 0 KEEP + Nprl2 NO AFB1_2 chr9 121687327 121687327 G T exonic Klhl40 nonsynonymous SNV NM_028202:c.G434T:p.C145F exonic Kbtbd5 nonsynonymous SNV uc009sdv.2:c.G434T:p.C145F exonic ENSMUSG00000074001 nonsynonymous SNV ENSMUST00000098272:c.G434T:p.C145F 9qF4 NA NA chr9 121687327 ACTxCGC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 57 0 0 9.891145 0.333333 0.02 -0.105238 8 4 231 113 60 60 0 0 GG 11.126028 37 0 1019 0 KEEP + Klhl40 YES AFB1_2 chr9 123737324 123737324 C A exonic Fyco1 nonsynonymous SNV NM_001110253:c.G2907T:p.E969D exonic Fyco1 nonsynonymous SNV uc009sgu.2:c.G2907T:p.E969D exonic ENSMUSG00000025241 nonsynonymous SNV ENSMUST00000167595:c.G2907T:p.E969D 9qF4 NA NA chr9 123737324 AATxTCA C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.229143 0.229173 0.999869 40 0 0 9.231066 0.266667 0.02 -0.131553 11 4 326 111 60 60 0 0 CC 6.317587 21 0 605 0 KEEP - Fyco1 YES AFB1_2 chr9 20612149 20612149 C A exonic Col5a3 nonsynonymous SNV NM_016919:c.G752T:p.G251V exonic Col5a3 nonsynonymous SNV uc009ojf.1:c.G752T:p.G251V exonic ENSMUSG00000004098 nonsynonymous SNV ENSMUST00000004201:c.G752T:p.G251V 9qA3 NA NA chr9 20612149 TTGxCCT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 107 0 0 23.298602 0.203704 0.02 1.22167 43 11 1239 299 60 60 0 0 CC 13.234416 44 0 1221 0 KEEP - Col5a3 YES AFB1_2 chr9 29219235 29219235 C A intronic Ntm NA NA exonic Ntm nonsynonymous SNV uc009oqt.1:c.G73T:p.V25L exonic ENSMUSG00000059974 nonsynonymous SNV ENSMUST00000115236:c.G73T:p.V25L 9qA4 NA NA chr9 29219235 GTAxAAG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 97 1 5 13.270516 0.181818 0.02 -0.289403 27 6 773 172 60 60 0 0 CC 15.314335 54 1 1503 8 KEEP - Ntm YES AFB1_2 chr9 37228604 37228604 C A exonic Robo3 nonsynonymous SNV NM_001164767:c.G2648T:p.R883L exonic Robo3 nonsynonymous SNV uc009ouw.1:c.G2582T:p.R861L exonic ENSMUSG00000032128 nonsynonymous SNV ENSMUST00000034643:c.G2582T:p.R861L 9qA4 NA NA chr9 37228604 AACxGTT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999997 42 0 0 8.22573 0.5 0.02 -0.052596 3 3 72 86 60 60 0 0 CC 9.615722 32 0 803 0 KEEP - Robo3 YES AFB1_2 chr9 43599142 43599142 G A exonic Pvrl1 synonymous SNV NM_021424:c.G102A:p.Q34Q exonic Pvrl1 synonymous SNV uc009pbj.1:c.G102A:p.Q34Q exonic ENSMUSG00000032012 synonymous SNV ENSMUST00000034510:c.G102A:p.Q34Q 9qA5.1 NA NA chr9 43599142 GCAxGTG G A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139743 0.139832 0.999366 30 0 0 18.996466 0.583333 0.02 -0.105222 5 7 144 192 60 60 0 0 GG 5.113906 17 0 485 0 KEEP + Pvrl1 NO AFB1_2 chr9 57463344 57463344 T G intronic Lman1l NA NA ncRNA_intronic slamp NA NA intronic ENSMUSG00000056271 NA NA 9qB NA NA chr9 57463344 GGGxGGG T G AFB1_2_TTAGGC 7-E185-R-P_1 0 DBSNP COVERED 0.86562 0.865745 0.999855 102 0 0 7.778421 0.419355 0.02 -0.331845 18 13 431 113 60 60 0 0 TT 10.6875 36 0 856 0 KEEP - Lman1l NO AFB1_2 chr9 74885731 74885731 C G exonic Arpp19 nonsynonymous SNV NM_021548:c.C8G:p.A3G exonic Arpp19 nonsynonymous SNV uc009qro.1:c.C8G:p.A3G exonic ENSMUSG00000007656 nonsynonymous SNV ENSMUST00000007800:c.C8G:p.A3G 9qD NA NA chr9 74885731 CCGxGGA C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 203 7 0 11.554525 0.208333 0.02 -0.210393 19 5 501 145 60 25 0 0 CC 43.490288 145 0 3580 0 KEEP + Arpp19 NO AFB1_2 chr9 89966779 89966779 A G intronic Ctsh NA NA intronic Ctsh NA NA intronic ENSMUSG00000032359 NA NA 9qE3.1 NA NA chr9 89966779 GGCxGGG A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 71 0 0 6.573056 0.275862 0.02 -0.26989 21 8 563 102 60 60 0 0 AA 9.92264 33 0 893 0 KEEP + Ctsh NO AFB1_2 chr9 92161184 92161184 A G intronic Plscr1 NA NA intronic Plscr1 NA NA intronic ENSMUSG00000032369 NA NA 9qE3.3 NA NA chr9 92161184 ACTxTTC A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.229142 0.229173 0.999863 34 0 0 13.039437 0.333333 0.02 -0.131546 10 5 280 148 60 60 0 0 AA 6.013825 20 0 529 0 KEEP + Plscr1 NO AFB1_2 chrX 104035092 104035092 C G UTR5 Zcchc5 NA NA UTR5 Zcchc5 NA NA UTR5 ENSMUSG00000047686 NA NA XqD NA NA chrX 104035092 AGAxGTC C G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12036 0.120436 0.999366 29 0 0 7.63379 0.272727 0.02 -0.096406 8 3 195 90 60 60 0 0 CC 5.103906 17 0 404 0 KEEP - Zcchc5 NO AFB1_2 chrX 157129437 157129437 C A exonic Ppef1 stopgain SNV NM_011147:c.G226T:p.E76X exonic Ppef1 stopgain SNV uc009utp.1:c.G31T:p.E11X exonic ENSMUSG00000062168 stopgain SNV ENSMUST00000135856:c.G31T:p.E11X XqF4 NA NA chrX 157129437 CTTxATT C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999366 1 0.999366 213 1 0 123.867021 0.276596 0.02 3.624745 136 52 4014 1472 60 60 0 0 CC 5.113997 17 0 486 0 KEEP - Ppef1 YES AFB1_2 chrX 166414822 166414822 T C ncRNA_intronic G530011O06Rik NA NA ncRNA_intronic "Fxy,G530011O06Rik" NA NA ncRNA_intronic ENSMUSG00000072844 NA NA XqF5 NA NA chrX 166414822 AAAxTCA T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 140 0 0 8.643499 0.070423 0.02 1.072648 66 5 1819 141 60 60 0 0 TT 17.743169 59 0 1588 0 KEEP - G530011O06Rik NO AFB1_2 chrX 166419939 166419939 A G exonic Mid1 synonymous SNV NM_010797:c.A987G:p.L329L exonic Mid1 synonymous SNV uc009uxz.1:c.A369G:p.L123L exonic ENSMUSG00000035299 synonymous SNV ENSMUST00000079443:c.A186G:p.L62L XqF5 NA NA chrX 166419939 TCTxCAG A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 252 5 0 9.764998 0.043478 0.02 2.368248 132 6 3649 176 60 50 0 0 AA 28.267021 94 0 2514 0 KEEP + Mid1 NO AFB1_2 chrX 166421921 166421921 A G exonic Mid1 synonymous SNV NM_010797:c.A1047G:p.L349L exonic Mid1 synonymous SNV uc009uxz.1:c.A429G:p.L143L exonic ENSMUSG00000035299 synonymous SNV ENSMUST00000079443:c.A246G:p.L82L XqF5 NA NA chrX 166421921 CCTxATT A G AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 427 3 0 15.26431 0.04712 0.02 3.688138 182 9 5097 267 60 50 0 0 AA 57.07334 190 0 5126 0 KEEP + Mid1 NO AFB1_2 chrX 166421951 166421951 T C exonic Mid1 synonymous SNV NM_010797:c.T1077C:p.F359F exonic Mid1 synonymous SNV uc009uxz.1:c.T459C:p.F153F exonic ENSMUSG00000035299 synonymous SNV ENSMUST00000079443:c.T276C:p.F92F XqF5 NA NA chrX 166421951 GTTxGAC T C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 450 6 0 16.04386 0.045455 0.02 5.244778 210 10 5998 289 60 50 0 0 TT 60.129104 200 0 5443 0 KEEP + Mid1 NO AFB1_2 chrX 20513399 20513399 C A exonic Elk1 nonsynonymous SNV NM_007922:c.G1048T:p.G350W exonic Elk1 nonsynonymous SNV uc009suc.1:c.G1048T:p.G350W exonic ENSMUSG00000009406 nonsynonymous SNV ENSMUST00000009550:c.G1048T:p.G350W XqA1.3 NA NA chrX 20513399 GCCxCGG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 110 1 0 14.557429 0.3 0.02 -0.175382 14 6 393 170 60 60 0 0 CC 21.63817 72 0 1973 0 KEEP - Elk1 YES AFB1_2 chrX 35437828 35437828 G T exonic Rhox11 nonsynonymous SNV NM_198598:c.C327A:p.F109L exonic Rhox11 nonsynonymous SNV uc009szm.1:c.C327A:p.F109L exonic ENSMUSG00000051038 nonsynonymous SNV ENSMUST00000054147:c.C327A:p.F109L XqA3.3 NA NA chrX 35437828 TACxAAC G T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 86 0 0 70.5071 1 0.02 -0.184168 0 21 0 605 0 60 0 0 GG 16.819468 56 0 1352 0 KEEP - Rhox11 YES AFB1_2 chrX 50598520 50598520 C T exonic Fam122b nonsynonymous SNV NM_001166583:c.G652A:p.A218T exonic Fam122b nonsynonymous SNV uc009tey.2:c.G652A:p.A218T exonic ENSMUSG00000036022 nonsynonymous SNV ENSMUST00000114841:c.G652A:p.A218T XqA5 NA NA chrX 50598520 AGGxAGG C T AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 73 0 0 6.83241 0.272727 0.02 -0.096467 8 3 232 82 60 60 0 0 CC 15.642584 52 0 1481 0 KEEP - Fam122b NO AFB1_2 chrX 70479946 70479946 G C exonic Xlr4c nonsynonymous SNV NM_183094:c.C541G:p.L181V exonic Xlr4c nonsynonymous SNV uc009tll.1:c.C541G:p.L181V exonic ENSMUSG00000031362 nonsynonymous SNV ENSMUST00000068551:c.C541G:p.L181V XqA7.3 "Score=0.977896;Name=No.113380,chrX:70431519" NA chrX 70479946 TTAxTTT G C AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 160 1 14 19.280971 0.242424 0.02 -0.289411 25 8 720 234 43 43 0 0 GG 28.870679 96 0 2686 0 KEEP - Xlr4c NO AFB1_2 chrY 599815 599815 C A intronic Ddx3y NA NA intronic "Ddx3x,Ddx3y" NA NA intronic ENSMUSG00000069045 NA NA YqA1 NA NA chrY 599815 TATxAAG C A AFB1_2_TTAGGC 7-E185-R-P_1 0 NOVEL COVERED 0.999366 0.999999 0.999366 147 0 0 112.883427 0.362903 0.02 2.499644 79 45 2336 1267 60 60 0 0 CC 5.114361 17 0 492 0 KEEP - Ddx3y YES AFB1_3 chr10 126953385 126953385 A T intronic Ndufa4l2 NA NA intronic Ndufa4l2 NA NA intronic ENSMUSG00000040280 NA NA 10qD3 NA NA chr10 126953385 GTAxCTG A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 79 0 0 22.961774 0.263158 0.02 -0.33322 28 10 782 277 60 60 0 0 AA 10.826215 36 0 976 0 KEEP + Ndufa4l2 NO AFB1_3 chr10 13850228 13850228 A C exonic Hivep2 nonsynonymous SNV NM_010437:c.A2763C:p.Q921H exonic Hivep2 nonsynonymous SNV uc007eli.1:c.A2763C:p.Q921H exonic ENSMUSG00000015501 nonsynonymous SNV ENSMUST00000015645:c.A2763C:p.Q921H 10qA2 NA NA chr10 13850228 CCAxCTC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 149 2 0 19.12436 0.5 0.02 -0.12277 7 7 194 200 60 60 0 0 AA 33.962089 113 0 3035 0 KEEP + Hivep2 NO AFB1_3 chr10 13851956 13851956 C G exonic Hivep2 nonsynonymous SNV NM_010437:c.C4491G:p.F1497L exonic Hivep2 nonsynonymous SNV uc007eli.1:c.C4491G:p.F1497L exonic ENSMUSG00000015501 nonsynonymous SNV ENSMUST00000015645:c.C4491G:p.F1497L 10qA2 NA NA chr10 13851956 CTTxCAG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 62 0 0 7.232475 0.272727 0.02 -0.096471 8 3 233 86 60 60 0 0 CC 13.833235 46 0 1285 0 KEEP + Hivep2 NO AFB1_3 chr10 17562593 17562593 G T exonic Txlnb nonsynonymous SNV NM_138628:c.G1365T:p.K455N exonic Txlnb nonsynonymous SNV uc007elv.1:c.G1365T:p.K455N exonic ENSMUSG00000039891 nonsynonymous SNV ENSMUST00000037964:c.G1365T:p.K455N 10qA2 NA NA chr10 17562593 AAAxGAA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.259062 0.260965 0.992708 26 1 0 15.06496 0.375 0.02 -0.140316 10 6 290 168 60 60 0 0 GG 3.008371 10 0 288 0 KEEP + Txlnb YES AFB1_3 chr10 23669401 23669401 G C exonic Taar3 nonsynonymous SNV NM_001008429:c.G38C:p.C13S exonic Taar3 nonsynonymous SNV uc007eqf.1:c.G38C:p.C13S exonic ENSMUSG00000069708 nonsynonymous SNV ENSMUST00000045152:c.G38C:p.C13S 10qA4 NA NA chr10 23669401 GCTxTCC G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 61 0 0 18.715693 0.388889 0.02 -0.157862 11 7 315 206 60 60 0 0 GG 10.829267 36 0 1021 0 KEEP + Taar3 NO AFB1_3 chr10 26704147 26704147 G A exonic Lama2 nonsynonymous SNV NM_008481:c.C9149T:p.A3050V exonic Lama2 nonsynonymous SNV uc007esf.1:c.C5888T:p.A1963V exonic ENSMUSG00000019899 nonsynonymous SNV ENSMUST00000105517:c.C3647T:p.A1216V 10qA4 NA NA chr10 26704147 GATxCTG G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 179 4 4 7.332357 0.375 0.02 -0.070155 5 3 144 82 36 36 0 0 GG 36.722283 131 1 3721 25 KEEP - Lama2 NO AFB1_3 chr10 68812839 68812839 C A intronic Cdk1 NA NA intronic Cdk1 NA NA intronic ENSMUSG00000019942 NA NA 10qB5.3 NA NA chr10 68812839 CCAxTTA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.457715 0.457757 0.999909 56 2 0 8.680616 0.181818 0.02 -0.19292 18 4 503 113 60 60 0 0 CC 7.219297 24 0 678 0 KEEP - Cdk1 YES AFB1_3 chr10 70700909 70700909 C G upstream Tfam NA NA intronic Tfam NA NA UTR5 ENSMUSG00000003923 NA NA 10qB5.3 NA NA chr10 70700909 GGCxGAG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.78095 0.78106 0.999859 53 0 0 26.431295 0.363636 0.02 -0.297917 21 12 533 301 60 60 0 0 CC 5.410322 18 0 472 0 KEEP - Tfam NO AFB1_3 chr10 79786448 79786448 C A exonic Pcsk4 nonsynonymous SNV NM_008793:c.G1234T:p.D412Y exonic Pcsk4 nonsynonymous SNV uc011xiq.1:c.G553T:p.D185Y exonic ENSMUSG00000020131 nonsynonymous SNV ENSMUST00000020340:c.G1234T:p.D412Y 10qC1 NA NA chr10 79786448 AGTxCTC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.860234 0.865745 0.993634 52 0 0 6.816814 0.102564 0.02 -0.341999 35 4 998 105 60 60 0 0 CC 3.60914 12 0 330 0 KEEP - Pcsk4 YES AFB1_3 chr10 80640940 80640940 G A exonic Eef2 nonsynonymous SNV NM_007907:c.G361A:p.V121I exonic Eef2 nonsynonymous SNV uc007ggf.1:c.G325A:p.V109I exonic ENSMUSG00000034994 nonsynonymous SNV ENSMUST00000047864:c.G361A:p.V121I 10qC1 NA NA chr10 80640940 CGTxTCA G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 636 118 16 8.960908 0.092593 0.02 1.123886 49 5 1381 138 60 60 0 0 GG 166.283231 553 0 15137 0 KEEP + Eef2 NO AFB1_3 chr11 103319359 103319359 C A intergenic "Plekhm1(dist=45381),Gm884(dist=76532)" NA NA intergenic "DQ726408(dist=10879),Gm884(dist=76532)" NA NA exonic ENSMUSG00000078632 nonsynonymous SNV ENSMUST00000153273:c.G7823T:p.R2608I 11qE1 NA NA chr11 103319359 GCTxTGC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 59 2 0 51.619928 1 0.02 -0.140287 0 16 0 440 0 60 0 0 CC 11.131066 37 0 1067 0 KEEP NA Plekhm1 YES AFB1_3 chr11 113734479 113734479 C G exonic Sdk2 nonsynonymous SNV NM_172800:c.G794C:p.G265A exonic Sdk2 nonsynonymous SNV uc007mfe.1:c.G794C:p.G265A exonic ENSMUSG00000041592 nonsynonymous SNV ENSMUST00000041627:c.G794C:p.G265A 11qE2 NA NA chr11 113734479 ATGxCAC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 94 1 0 23.497201 0.666667 0.02 -0.105241 4 8 117 230 60 60 0 0 CC 17.709255 59 0 1622 0 KEEP - Sdk2 NO AFB1_3 chr11 115794300 115794300 T A UTR5 Recql5 NA NA UTR5 "RecQ5,Recql5" NA NA UTR5 ENSMUSG00000020752 NA NA 11qE2 NA NA chr11 115794300 CTCxGCT T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.03676 0.036766 0.999859 28 0 0 19.458154 1 0.02 -0.052612 0 6 0 166 0 60 0 0 TT 5.412306 18 0 485 0 KEEP - Recql5 NO AFB1_3 chr11 118942722 118942722 C G exonic Cbx4 synonymous SNV NM_007625:c.G1140C:p.P380P exonic Cbx4 synonymous SNV uc007mpv.2:c.G942C:p.P314P exonic ENSMUSG00000039989 synonymous SNV ENSMUST00000026665:c.G1140C:p.P380P 11qE2 NA NA chr11 118942722 GGGxGGG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043461 0.043787 0.99257 15 0 0 8.921651 0.571429 0.02 -0.061284 3 4 79 91 60 60 0 0 CC 2.405994 8 0 218 0 KEEP - Cbx4 NO AFB1_3 chr11 121769589 121769589 C T intergenic "Ptchd3(dist=64839),NONE(dist=NONE)" NA NA intergenic "Ptchd3(dist=64361),NONE(dist=NONE)" NA NA exonic ENSMUSG00000062632 nonsynonymous SNV ENSMUST00000142242:c.G44A:p.R15Q 11qE2 "Score=0.933092;Name=No.13051,chr11:121804463" NA chr11 121769589 TCTxGAG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 140 0 2 13.372045 0.181818 0.02 -0.306796 27 6 698 173 60 23 0 0 CC 24.184241 90 1 2439 27 KEEP NA Ptchd3 NO AFB1_3 chr11 121804898 121804898 A G intergenic "Ptchd3(dist=100148),NONE(dist=NONE)" NA NA intergenic "Ptchd3(dist=99670),NONE(dist=NONE)" NA NA exonic ENSMUSG00000078564 synonymous SNV ENSMUST00000130783:c.T825C:p.G275G 11qE2 "Score=0.933092;Name=No.13051,chr11:121767238" NA chr11 121804898 TTTxCCA A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.760782 0.760887 0.999863 59 1 3 8.159542 0.137931 0.02 -0.289368 25 4 689 113 60 29 0 0 AA 6.014174 20 0 534 0 KEEP NA Ptchd3 NO AFB1_3 chr11 32498758 32498758 A T exonic Stk10 nonsynonymous SNV NM_009288:c.A1325T:p.K442M exonic Stk10 nonsynonymous SNV uc007ijt.1:c.A1325T:p.K442M exonic ENSMUSG00000020272 nonsynonymous SNV ENSMUST00000102821:c.A1325T:p.K442M 11qA4 NA NA chr11 32498758 GCAxGTC A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 134 0 0 18.823657 0.5 0.02 -0.122775 7 7 201 197 60 60 0 0 AA 30.975835 103 0 2836 0 KEEP + Stk10 NO AFB1_3 chr11 33060892 33060892 T C exonic Npm1 synonymous SNV NM_001252260:c.A249G:p.P83P exonic Npm1 synonymous SNV uc007ikd.1:c.A288G:p.P96P exonic ENSMUSG00000057113 synonymous SNV ENSMUST00000075641:c.A288G:p.P96P 11qA4 NA NA chr11 33060892 AGGxGGT T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999997 0.999997 157 1 1 18.312785 0.103448 0.02 2.177656 104 12 2893 293 60 60 0 0 TT 9.022512 30 0 816 0 KEEP - Npm1 NO AFB1_3 chr11 46339718 46339718 G A intronic Gm12169 NA NA intronic Gm12169 NA NA intronic ENSMUSG00000078924 NA NA 11qB1.1 NA NA chr11 46339718 ACAxCCA G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.99986 45 3 1 6.534146 0.157895 0.02 -0.175405 16 3 466 87 36 23 0 0 GG 5.715477 19 0 539 0 KEEP + Gm12169 NO AFB1_3 chr11 54683733 54683733 G T exonic Hint1 nonsynonymous SNV NM_008248:c.G259T:p.D87Y exonic Hint1 nonsynonymous SNV uc007iyj.1:c.G259T:p.D87Y exonic ENSMUSG00000020267 nonsynonymous SNV ENSMUST00000020504:c.G259T:p.D87Y 11qB1.3 NA NA chr11 54683733 GCAxATC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054131 0.054137 0.999892 36 0 0 25.91084 1 0.02 -0.07015 0 8 0 221 0 60 0 0 GG 6.919198 23 0 661 0 KEEP + Hint1 YES AFB1_3 chr11 5471418 5471418 G T exonic Ankrd36 nonsynonymous SNV NM_023816:c.G448T:p.A150S exonic Ankrd36 nonsynonymous SNV uc007hwq.1:c.G448T:p.A150S exonic ENSMUSG00000020481 nonsynonymous SNV ENSMUST00000109855:c.G448T:p.A150S 11qA1 NA NA chr11 5471418 GCCxCCA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 67 0 0 29.387593 1 0.02 -0.078921 0 9 0 251 0 60 0 0 GG 14.429055 48 0 1249 0 KEEP + Ankrd36 YES AFB1_3 chr11 55124574 55124574 G A exonic Fat2 nonsynonymous SNV NM_001029988:c.C1175T:p.T392I exonic Fat2 nonsynonymous SNV uc007izf.1:c.C1175T:p.T392I exonic ENSMUSG00000055333 nonsynonymous SNV ENSMUST00000108864:c.C1175T:p.T392I 11qB1.3 NA NA chr11 55124574 AAAxTGG G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 147 2 0 6.379663 0.1875 0.02 -0.140315 13 3 374 83 60 60 0 0 GG 30.974495 103 0 2876 0 KEEP - Fat2 NO AFB1_3 chr11 58842076 58842076 G C exonic Obscn nonsynonymous SNV NM_001171512:c.C18644G:p.A6215G exonic Obscn nonsynonymous SNV uc011xvk.1:c.C311G:p.A104G exonic ENSMUSG00000061462 nonsynonymous SNV ENSMUST00000047441:c.C18626G:p.A6209G 11qB1.3 NA NA chr11 58842076 CGTxCCT G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 75 0 0 24.036469 1 0.02 -0.061394 0 7 0 207 0 60 0 0 GG 17.381925 58 0 1611 0 KEEP - Obscn NO AFB1_3 chr11 69292980 69292980 G A exonic Dnah2 synonymous SNV NM_001081330:c.C4791T:p.C1597C exonic Dnahc2 synonymous SNV uc007jqg.1:c.C4791T:p.C1597C exonic ENSMUSG00000005237 synonymous SNV ENSMUST00000035539:c.C4791T:p.C1597C 11qB3 NA NA chr11 69292980 AAAxCAC G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 0.999998 64 1 0 8.80172 0.25 0.02 -0.140311 12 4 349 108 60 60 0 0 GG 10.217499 34 0 953 0 KEEP - Dnah2 NO AFB1_3 chr11 72990770 72990770 C T UTR5 Tax1bp3 NA NA UTR5 Tax1bp3 NA NA UTR5 ENSMUSG00000040158 NA NA 11qB4 NA NA chr11 72990770 TCTxACC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.99581 0.999317 0.99649 100 7 0 12.505586 0.08642 0.02 0.984898 74 7 2130 195 60 25 0 0 CC 4.511502 15 0 422 0 KEEP + Tax1bp3 NO AFB1_3 chr11 72990774 72990774 G A UTR5 Tax1bp3 NA NA UTR5 Tax1bp3 NA NA UTR5 ENSMUSG00000040158 NA NA 11qB4 NA NA chr11 72990774 ACCxGGC G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.995603 0.99911 0.99649 99 7 0 13.283739 0.088608 0.02 1.00278 72 7 1882 202 60 25 0 0 GG 4.506132 15 0 366 0 KEEP + Tax1bp3 NO AFB1_3 chr11 72990798 72990798 C T UTR5 Tax1bp3 NA NA UTR5 Tax1bp3 NA NA UTR5 ENSMUSG00000040158 NA NA 11qB4 NA NA chr11 72990798 TTTxGGT C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.976088 0.979526 0.99649 80 11 2 19.581021 0.160714 0.02 1.204445 47 9 1162 260 60 25 0 0 CC 4.500454 15 0 390 0 KEEP + Tax1bp3 NO AFB1_3 chr11 75471238 75471238 A C intronic Myo1c NA NA intronic Myo1c NA NA intronic ENSMUSG00000017774 NA NA 11qB5 NA NA chr11 75471238 CCCxCCC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 70 0 0 6.583944 0.235294 0.02 -0.245001 13 4 321 87 60 60 0 1 AA 9.969007 34 0 776 0 KEEP + Myo1c NO AFB1_3 chr11 75835456 75835456 C G exonic Fam101b nonsynonymous SNV NM_029658:c.G607C:p.A203P exonic Fam101b nonsynonymous SNV uc007kez.2:c.G607C:p.A203P exonic ENSMUSG00000020846 nonsynonymous SNV ENSMUST00000021207:c.G607C:p.A203P 11qB5 NA NA chr11 75835456 TGGxCTC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 120 0 0 53.649589 0.42 0.02 -0.437726 29 21 796 584 60 60 0 0 CC 17.135639 57 0 1534 0 KEEP - Fam101b NO AFB1_3 chr11 85725602 85725602 C G intronic Tbx4 NA NA intronic Tbx4 NA NA intronic ENSMUSG00000000094 NA NA 11qC NA NA chr11 85725602 CTCxTCC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 65 0 0 13.373895 0.5 0.02 -0.087698 5 5 146 140 60 60 0 0 CC 15.641487 52 0 1467 0 KEEP + Tbx4 NO AFB1_3 chr11 85725604 85725604 C T intronic Tbx4 NA NA intronic Tbx4 NA NA intronic ENSMUSG00000000094 NA NA 11qC NA NA chr11 85725604 CCTxCAG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 68 0 0 13.874465 0.5 0.02 -0.087701 5 5 144 145 60 60 0 0 CC 16.541717 55 0 1543 0 KEEP + Tbx4 NO AFB1_3 chr11 94405508 94405508 C G intronic Rsad1 NA NA intronic Rsad1 NA NA intronic ENSMUSG00000039096 NA NA 11qD NA NA chr11 94405508 CAGxACA C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 108 0 0 67.330973 1 0.02 -0.175401 0 20 0 578 0 60 0 0 CC 24.667687 82 0 2355 0 KEEP - Rsad1 NO AFB1_3 chr11 97200248 97200248 A C exonic Gpr179 synonymous SNV NM_001081220:c.T2394G:p.A798A exonic Gpr179 synonymous SNV uc007ldy.1:c.T2394G:p.A798A exonic ENSMUSG00000070337 synonymous SNV ENSMUST00000093942:c.T2394G:p.A798A 11qD NA NA chr11 97200248 GGAxGCC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 96 0 0 42.467498 0.5 0.02 -0.2981 17 17 476 446 60 60 0 0 AA 15.321197 51 0 1368 0 KEEP - Gpr179 NO AFB1_3 chr11 97224478 97224478 C A exonic Socs7 nonsynonymous SNV NM_138657:c.C523A:p.R175S exonic Socs7 nonsynonymous SNV uc007lea.1:c.C523A:p.R175S exonic ENSMUSG00000038485 nonsynonymous SNV ENSMUST00000045540:c.C523A:p.R175S 11qD NA NA chr11 97224478 GGGxGCT C A AFB1_3_GATCAG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.990921 0.9982 0.992708 86 0 0 238.205666 1 0.02 1.055053 0 72 0 2039 0 60 0 0 CC 3.006759 10 0 271 0 KEEP + Socs7 YES AFB1_3 chr11 97547130 97547130 C A upstream;downstream Cisd3;Mllt6 NA NA exonic Cisd3 stopgain SNV uc007lej.2:c.C216A:p.C72X upstream;downstream ENSMUSG00000078695;ENSMUSG00000038437 NA NA 11qD NA NA chr11 97547130 ATGxGCA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 90 0 0 106.214876 1 0.02 -0.289334 0 33 0 905 0 60 0 0 CC 13.160299 44 0 1105 0 KEEP NA Cisd3 YES AFB1_3 chr11 98518913 98518913 G C exonic Gsdma2 nonsynonymous SNV NM_029727:c.G1176C:p.E392D exonic Gsdma2 nonsynonymous SNV uc011yef.1:c.G675C:p.E225D exonic ENSMUSG00000017211 nonsynonymous SNV ENSMUST00000017355:c.G675C:p.E225D 11qD NA NA chr11 98518913 GGAxGAG G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 341 1 0 9.884108 0.178571 0.02 -0.245505 23 5 645 132 60 60 0 0 GG 78.180981 260 0 7307 0 KEEP + Gsdma2 NO AFB1_3 chr11 99995573 99995573 C G exonic Krt15 nonsynonymous SNV NM_008469:c.G633C:p.E211D exonic Krt15 nonsynonymous SNV uc007lkk.2:c.G633C:p.E211D exonic ENSMUSG00000054146 nonsynonymous SNV ENSMUST00000007273:c.G633C:p.E211D 11qD NA NA chr11 99995573 CAGxTCA C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 93 0 0 46.370652 1 0.02 -0.122773 0 14 0 397 0 60 0 0 CC 20.455267 68 0 1928 0 KEEP - Krt15 NO AFB1_3 chr12 101299385 101299385 G C exonic Kcnk13 nonsynonymous SNV NM_001164426:c.G508C:p.A170P exonic Kcnk13 nonsynonymous SNV uc007osi.2:c.G508C:p.A170P exonic ENSMUSG00000045404 nonsynonymous SNV ENSMUST00000049788:c.G508C:p.A170P 12qE NA NA chr12 101299385 GGGxCGG G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 100 0 0 12.622585 0.357143 0.02 -0.122776 9 5 257 142 60 60 0 0 GG 22.85519 76 0 2086 0 KEEP + Kcnk13 NO AFB1_3 chr12 104437982 104437982 T C intronic Prima1 NA NA intronic Prima1 NA NA UTR3 ENSMUSG00000041669 NA NA 12qE NA NA chr12 104437982 TACxTAG T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161432 0.162467 0.993634 25 0 0 12.823338 0.384615 0.02 -0.114008 8 5 231 142 60 60 0 0 TT 3.609396 12 0 335 0 KEEP - Prima1 NO AFB1_3 chr12 105387644 105387644 G C exonic Serpina3c nonsynonymous SNV NM_008458:c.C850G:p.Q284E exonic Serpina3c nonsynonymous SNV uc007owv.1:c.C850G:p.Q284E exonic ENSMUSG00000066361 nonsynonymous SNV ENSMUST00000085050:c.C850G:p.Q284E 12qE NA NA chr12 105387644 CCTxCTG G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 152 2 1 10.603421 0.128205 0.02 -0.342024 34 5 970 147 60 37 0 0 GG 31.564372 105 0 2933 0 KEEP - Serpina3c NO AFB1_3 chr12 16688202 16688202 A T exonic Greb1 nonsynonymous SNV NM_001252071:c.T4856A:p.V1619D exonic Greb1 nonsynonymous SNV uc011ykk.1:c.T4856A:p.V1619D exonic ENSMUSG00000036523 nonsynonymous SNV ENSMUST00000048064:c.T4940A:p.V1647D 12qA1.1 NA NA chr12 16688202 ATGxCGA A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 52 0 0 14.568776 0.352941 0.02 -0.149077 11 6 312 165 60 60 0 0 AA 8.680584 29 0 762 0 KEEP - Greb1 NO AFB1_3 chr12 35809120 35809120 A G exonic Snx13 nonsynonymous SNV NM_001014973:c.A1975G:p.M659V exonic Snx13 nonsynonymous SNV uc007njh.2:c.A1765G:p.M589V exonic ENSMUSG00000020590 nonsynonymous SNV ENSMUST00000048519:c.A1765G:p.M589V 12qA3 NA NA chr12 35809120 GAAxTGA A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.995686 0.995687 0.999999 114 3 0 50.25419 0.294118 0.02 1.197185 48 20 1361 586 60 60 0 0 AA 10.827662 36 0 990 0 KEEP + Snx13 NO AFB1_3 chr12 39056630 39056630 G A exonic Dgkb synonymous SNV NM_178681:c.G1797A:p.E599E exonic Dgkb synonymous SNV uc007nkn.1:c.G1620A:p.E540E exonic ENSMUSG00000036095 synonymous SNV ENSMUST00000040500:c.G1797A:p.E599E 12qA3 NA NA chr12 39056630 AGAxAAA G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 181 0 0 7.127473 0.15625 0.02 0.460126 81 15 1949 173 60 60 0 0 GG 15.943035 53 0 1509 0 KEEP + Dgkb NO AFB1_3 chr12 3980498 3980498 T C exonic Efr3b synonymous SNV NM_001082483:c.A1212G:p.K404K exonic Efr3b synonymous SNV uc011yjt.1:c.A984G:p.K328K exonic ENSMUSG00000020658 synonymous SNV ENSMUST00000077156:c.A1212G:p.K404K 12qA1.1 NA NA chr12 3980498 GACxTTG T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 51 0 0 24.384312 0.473684 0.02 -0.166625 10 9 286 258 60 60 0 0 TT 7.19311 24 0 655 0 KEEP - Efr3b NO AFB1_3 chr12 45676872 45676872 C T exonic Nrcam nonsynonymous SNV NM_001146031:c.C2813T:p.A938V exonic Nrcam nonsynonymous SNV uc007nlt.2:c.C2759T:p.A920V exonic ENSMUSG00000020598 nonsynonymous SNV ENSMUST00000110748:c.C2813T:p.A938V 12qB3 NA NA chr12 45676872 GTGxTCC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 130 3 0 46.953098 0.294118 0.02 1.098907 48 20 1370 553 60 60 0 0 CC 16.842814 56 0 1551 0 KEEP + Nrcam NO AFB1_3 chr12 60202557 60202557 T G exonic Mia2 nonsynonymous SNV NM_177321:c.T215G:p.L72R exonic Mia2 nonsynonymous SNV uc007nqc.1:c.T215G:p.L72R exonic ENSMUSG00000035349 nonsynonymous SNV ENSMUST00000021384:c.T215G:p.L72R 12qC1 NA NA chr12 60202557 AACxTGG T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999999 79 0 0 31.717919 0.358974 0.02 -0.341962 25 14 719 361 60 60 0 0 TT 10.525032 35 0 949 0 KEEP + Mia2 NO AFB1_3 chr12 66163809 66163809 T G UTR3 Prpf39 NA NA UTR3 Prpf39 NA NA UTR3 ENSMUSG00000035597 NA NA 12qC1 NA NA chr12 66163809 AATxAAA T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.830395 0.835716 0.993634 50 0 0 13.543834 0.162162 0.02 -0.324468 31 6 867 178 60 60 0 0 TT 3.607442 12 0 312 0 KEEP + Prpf39 NO AFB1_3 chr12 77904663 77904663 G A intronic Rab15 NA NA intronic Rab15 NA NA intronic "ENSMUSG00000021062,ENSMUSG00000033373" NA NA 12qC3 NA NA chr12 77904663 GAAxATG G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 86 0 0 35.648479 0.705882 0.02 -0.149092 5 12 149 344 60 60 0 0 GG 18.643331 62 0 1739 0 KEEP - Rab15 NO AFB1_3 chr12 86619914 86619914 T C intronic Acyp1 NA NA exonic Acyp1 nonsynonymous SNV uc007ogv.1:c.A260G:p.K87R exonic ENSMUSG00000008822 nonsynonymous SNV ENSMUST00000065913:c.A260G:p.K87R 12qD2 NA NA chr12 86619914 CACxTGC T C AFB1_3_GATCAG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL UNCOVERED 0.09903 0.099721 0.993072 23 0 0 7.278546 0.3 0.02 -0.087699 7 3 202 85 60 60 0 0 TT 3.309444 11 0 323 0 KEEP - Acyp1 NO AFB1_3 chr12 88223768 88223768 C A exonic Irf2bpl synonymous SNV NM_145836:c.G1080T:p.T360T exonic 6430527G18Rik synonymous SNV uc007oia.2:c.G1080T:p.T360T exonic ENSMUSG00000034168 synonymous SNV ENSMUST00000038422:c.G1080T:p.T360T 12qD2 NA NA chr12 88223768 CAGxGTG C A AFB1_3_GATCAG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL UNCOVERED 0.043461 0.043787 0.99257 17 0 0 11.132428 0.571429 0.02 -0.061369 3 4 76 113 60 60 0 0 CC 2.40457 8 0 207 0 KEEP - Irf2bpl YES AFB1_3 chr13 100896921 100896921 A G exonic Smn1 nonsynonymous SNV NM_011420:c.A241G:p.N81D exonic Smn1 nonsynonymous SNV uc007rqg.1:c.A241G:p.N81D exonic ENSMUSG00000021645 nonsynonymous SNV ENSMUST00000022147:c.A241G:p.N81D 13qD1 NA NA chr13 100896921 AAGxATG A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.976863 0.976865 0.999997 98 1 0 31.343586 0.236364 0.02 1.311189 42 13 1195 382 60 60 0 0 AA 9.625559 32 0 896 0 KEEP + Smn1 NO AFB1_3 chr13 103526099 103526099 G T exonic Mast4 synonymous SNV NM_175171:c.C6840A:p.V2280V exonic Mast4 synonymous SNV uc007rsb.2:c.C6840A:p.V2280V exonic ENSMUSG00000034751 synonymous SNV ENSMUST00000171791:c.C6264A:p.V2088V 13qD1 NA NA chr13 103526099 GTGxACA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 131 1 0 8.482574 0.181818 0.02 -0.192751 18 4 514 111 60 60 0 0 GG 27.668099 92 0 2594 0 KEEP - Mast4 YES AFB1_3 chr13 113677772 113677772 C T splicing Skiv2l2(NM_028151:exon20:c.2047-1G>A) NA NA splicing "Skiv2l2(uc007rws.1:exon20:c.2047-1G>A,uc007rwt.1:exon13:c.1015-1G>A)" NA NA splicing ENSMUSG00000016018(ENSMUST00000022281:exon20:c.2047-1G>A) NA NA 13qD2.2 NA NA chr13 113677772 GGGxTAC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 100 1 0 23.228613 0.409091 0.02 -0.192943 13 9 384 254 60 60 0 0 CC 19.547188 65 0 1830 0 KEEP - Skiv2l2 NO AFB1_3 chr13 19282776 19282776 T G intergenic "Amph(dist=39992),Stard3nl(dist=166769)" NA NA exonic AK133996 synonymous SNV uc011ywm.1:c.T342G:p.T114T exonic ENSMUSG00000076746 synonymous SNV ENSMUST00000103555:c.T381G:p.T127T 13qA2 NA NA chr13 19282776 AACxTAT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 51 0 0 6.472917 0.2 0.02 -0.131542 12 3 341 83 60 60 0 0 TT 8.961543 30 0 812 0 KEEP NA Amph NO AFB1_3 chr13 24233505 24233505 C G intronic Lrrc16a NA NA intronic Lrrc16a NA NA intronic ENSMUSG00000021338 NA NA 13qA3.1 NA NA chr13 24233505 TGGxTGC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 49 0 0 7.632626 0.375 0.02 -0.070156 5 3 143 85 60 60 0 0 CC 9.324701 31 0 870 0 KEEP - Lrrc16a NO AFB1_3 chr13 40812794 40812794 A T intronic Tfap2a NA NA intronic Tcfap2a NA NA intronic ENSMUSG00000021359 NA NA 13qA3.3 NA NA chr13 40812794 AGAxGTG A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 0.999997 53 0 0 12.639046 0.333333 0.02 -0.131552 10 5 290 144 60 60 0 0 AA 9.625654 32 0 898 0 KEEP - Tfap2a NO AFB1_3 chr13 4246091 4246091 G C exonic Akr1c19 nonsynonymous SNV NM_001013785:c.G889C:p.D297H exonic Akr1c19 nonsynonymous SNV uc007pjm.2:c.G889C:p.D297H exonic ENSMUSG00000071551 nonsynonymous SNV ENSMUST00000081326:c.G889C:p.D297H 13qA1 NA NA chr13 4246091 CTAxATA G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.997392 0.999559 0.997832 103 0 0 35.577786 0.190476 0.02 0.958517 68 16 2002 457 60 60 0 0 GG 4.813466 16 0 462 0 KEEP + Akr1c19 NO AFB1_3 chr13 46385099 46385099 G T exonic Stmnd1 nonsynonymous SNV NM_001005422:c.G337T:p.D113Y exonic Gm1574 nonsynonymous SNV uc007qhd.1:c.G337T:p.D113Y exonic ENSMUSG00000063529 nonsynonymous SNV ENSMUST00000076622:c.G337T:p.D113Y 13qA5 NA NA chr13 46385099 TCAxACA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.992192 0.995687 0.99649 85 0 0 32.578914 0.220588 0.02 1.000989 53 15 1557 410 60 60 0 0 GG 4.512587 15 0 433 0 KEEP + Stmnd1 YES AFB1_3 chr13 67417528 67417528 G A exonic Zfp595 nonsynonymous SNV NM_177622:c.C1615T:p.R539C exonic Zfp595 nonsynonymous SNV uc007rao.1:c.C1615T:p.R539C exonic ENSMUSG00000057842 nonsynonymous SNV ENSMUST00000109735:c.C1615T:p.R539C 13qB3 NA NA chr13 67417528 AACxGAA G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.997667 0.999835 0.997832 107 0 0 10.733558 0.067416 0.02 0.906258 83 6 2196 174 60 60 0 0 GG 4.810512 16 0 430 0 KEEP - Zfp595 NO AFB1_3 chr13 74460376 74460376 T C UTR3 Sdha NA NA UTR3 Sdha NA NA UTR3 ENSMUSG00000021577 NA NA 13qC1 NA NA chr13 74460376 AACxCAA T C AFB1_3_GATCAG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.519729 0.522161 0.995343 38 0 0 16.648586 0.291667 0.02 -0.210468 17 7 485 196 60 60 0 0 TT 4.211638 14 0 404 0 KEEP - Sdha NO AFB1_3 chr13 91993171 91993171 T C exonic Ckmt2 nonsynonymous SNV NM_198415:c.A1223G:p.K408R exonic Ckmt2 nonsynonymous SNV uc007rkc.1:c.A1223G:p.K408R exonic ENSMUSG00000021622 nonsynonymous SNV ENSMUST00000022122:c.A1223G:p.K408R 13qC3 NA NA chr13 91993171 ACCxTGA T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.882244 0.888875 0.99254 53 2 0 8.120749 0.097561 0.02 -0.359558 37 4 1052 119 60 60 0 0 TT 2.707225 9 0 253 0 KEEP - Ckmt2 NO AFB1_3 chr13 93863645 93863645 C A exonic Cmya5 nonsynonymous SNV NM_023821:c.G4889T:p.G1630V exonic Cmya5 nonsynonymous SNV uc007rkw.2:c.G4673T:p.G1558V exonic ENSMUSG00000047419 nonsynonymous SNV ENSMUST00000062122:c.G4889T:p.G1630V 13qC3 NA NA chr13 93863645 GACxCAG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 64 0 0 17.415951 0.35 0.02 -0.175388 13 7 368 197 60 60 0 0 CC 12.016116 40 0 1086 0 KEEP - Cmya5 YES AFB1_3 chr13 93864274 93864274 T G exonic Cmya5 nonsynonymous SNV NM_023821:c.A4260C:p.K1420N exonic Cmya5 nonsynonymous SNV uc007rkw.2:c.A4044C:p.K1348N exonic ENSMUSG00000047419 nonsynonymous SNV ENSMUST00000062122:c.A4260C:p.K1420N 13qC3 NA NA chr13 93864274 TATxTTG T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.423422 0.423478 0.999869 43 1 0 11.081085 0.238095 0.02 -0.184157 16 5 455 137 60 60 0 0 TT 6.315671 21 0 578 0 KEEP - Cmya5 NO AFB1_3 chr13 96755991 96755991 G T intronic Sv2c NA NA intronic Sv2c NA NA intronic ENSMUSG00000051111 NA NA 13qD1 NA NA chr13 96755991 GTGxGTC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.32057 0.322807 0.993072 30 0 0 12.067534 0.277778 0.02 -0.157851 13 5 367 143 60 60 0 0 GG 3.306949 11 0 296 0 KEEP - Sv2c YES AFB1_3 chr13 99029363 99029363 A C exonic Utp15 nonsynonymous SNV NM_178918:c.T149G:p.L50R exonic Utp15 nonsynonymous SNV uc007rom.1:c.T149G:p.L50R exonic ENSMUSG00000041747 nonsynonymous SNV ENSMUST00000040972:c.T149G:p.L50R 13qD1 NA NA chr13 99029363 GGAxGCT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 167 2 0 28.661646 0.166667 0.02 0.808153 75 15 2142 391 60 60 0 0 AA 19.550334 65 0 1801 0 KEEP - Utp15 NO AFB1_3 chr14 104921815 104921815 C T exonic Rnf219 synonymous SNV NM_026047:c.G15A:p.V5V exonic Rnf219 synonymous SNV uc007uxc.1:c.G15A:p.V5V exonic ENSMUSG00000022120 synonymous SNV ENSMUST00000022716:c.G15A:p.V5V 14qE2.3 NA NA chr14 104921815 CTGxACG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 123 0 0 7.724013 0.5 0.02 -0.052613 3 3 86 81 60 60 0 0 CC 27.370501 91 0 2545 0 KEEP - Rnf219 NO AFB1_3 chr14 15599467 15599467 G T exonic Slc4a7 nonsynonymous SNV NM_001033270:c.G1905T:p.M635I exonic Slc4a7 nonsynonymous SNV uc007sgn.1:c.G1905T:p.M635I exonic ENSMUSG00000021733 nonsynonymous SNV ENSMUST00000057015:c.G1905T:p.M635I 14qA2 NA NA chr14 15599467 TATxCAC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 46 0 0 6.610907 0.166667 0.02 -0.157856 15 3 427 87 60 60 0 0 GG 7.518392 25 0 688 0 KEEP + Slc4a7 YES AFB1_3 chr14 21537984 21537984 A C exonic Zswim8 nonsynonymous SNV NM_001252081:c.A3247C:p.S1083R exonic 2310021P13Rik nonsynonymous SNV uc007sko.1:c.A3268C:p.S1090R exonic ENSMUSG00000021819 nonsynonymous SNV ENSMUST00000022358:c.A3268C:p.S1090R 14qA3 NA NA chr14 21537984 GAAxGTT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 72 4 0 7.13216 0.375 0.02 -0.070151 5 3 143 80 60 60 0 0 AA 14.776785 53 1 1444 10 KEEP + Zswim8 NO AFB1_3 chr14 35380625 35380625 C A exonic Ldb3 nonsynonymous SNV NM_001039071:c.G809T:p.R270L exonic Ldb3 nonsynonymous SNV uc007tbc.1:c.G809T:p.R270L exonic ENSMUSG00000021798 nonsynonymous SNV ENSMUST00000022327:c.G809T:p.R270L 14qB NA NA chr14 35380625 GAGxGAG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999998 56 0 0 10.385889 0.4 0.02 -0.105216 6 4 159 114 60 60 0 0 CC 10.218568 34 0 875 0 KEEP - Ldb3 YES AFB1_3 chr14 54260741 54260741 G T intergenic "Olfr1507(dist=1145371),A430107P09Rik(dist=24874)" NA NA exonic Gm13927 nonsynonymous SNV uc007tsx.1:c.G205T:p.G69W exonic ENSMUSG00000076847 nonsynonymous SNV ENSMUST00000103659:c.G205T:p.G69W 14qC2 "Score=0.964541;Name=No.53384,chr14:53842659" NA chr14 54260741 CCTxGGG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 144 8 9 57.600495 0.392857 0.02 1.302432 34 22 966 634 37 60 0 0 GG 21.356527 71 0 2003 0 KEEP NA Olfr1507 YES AFB1_3 chr14 56122731 56122731 A T exonic Lrrc16b synonymous SNV NM_001024645:c.A3135T:p.P1045P exonic Lrrc16b synonymous SNV uc007typ.1:c.A1722T:p.P574P exonic ENSMUSG00000022211 synonymous SNV ENSMUST00000076236:c.A3135T:p.P1045P 14qC3 NA NA chr14 56122731 TCCxCTC A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.947801 0.948402 0.999366 67 0 0 7.336542 0.083333 0.02 -0.420929 44 4 1240 114 60 60 0 0 AA 5.096752 17 0 406 0 KEEP + Lrrc16b NO AFB1_3 chr14 64647721 64647721 C A exonic Rp1l1 nonsynonymous SNV NM_146246:c.C1918A:p.L640I exonic Rp1l1 nonsynonymous SNV uc007uia.1:c.C1918A:p.L640I exonic ENSMUSG00000046049 nonsynonymous SNV ENSMUST00000058229:c.C1918A:p.L640I 14qD1 NA NA chr14 64647721 GCTxTCC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 59 2 0 55.774158 0.947368 0.02 -0.166596 1 18 30 489 60 60 0 0 CC 9.32555 31 0 886 0 KEEP + Rp1l1 YES AFB1_3 chr14 70977807 70977807 G T exonic Nudt18 nonsynonymous SNV NM_153136:c.G52T:p.G18W exonic Nudt18 nonsynonymous SNV uc007uok.1:c.G52T:p.G18W exonic ENSMUSG00000045211 nonsynonymous SNV ENSMUST00000089049:c.G52T:p.G18W 14qD2 NA NA chr14 70977807 AAGxGGT G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 132 0 0 52.470862 0.612903 0.02 -0.271839 12 19 347 524 60 60 0 0 GG 27.059127 90 0 2441 0 KEEP + Nudt18 YES AFB1_3 chr15 100950134 100950134 A C exonic Ankrd33 nonsynonymous SNV NM_144790:c.A996C:p.Q332H exonic Ankrd33 nonsynonymous SNV uc007xsk.1:c.A996C:p.Q332H exonic ENSMUSG00000047034 nonsynonymous SNV ENSMUST00000070875:c.A996C:p.Q332H 15qF2 NA NA chr15 100950134 CCAxGCT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 0.999999 75 1 0 22.37813 0.285714 0.02 -0.306891 25 10 704 267 60 60 0 0 AA 10.827178 36 0 988 0 KEEP + Ankrd33 NO AFB1_3 chr15 100965715 100965715 A C intronic Acvrl1 NA NA intronic Acvrl1 NA NA intronic ENSMUSG00000000530 NA NA 15qF2 NA NA chr15 100965715 CCCxCCC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 47 0 0 11.477644 0.625 0.02 -0.113575 3 5 85 114 60 60 0 0 AA 8.416093 28 0 722 0 KEEP + Acvrl1 NO AFB1_3 chr15 25294406 25294406 C A exonic Basp1 nonsynonymous SNV NM_027395:c.G259T:p.A87S exonic Basp1 nonsynonymous SNV uc007vix.2:c.G259T:p.A87S exonic ENSMUSG00000045763 nonsynonymous SNV ENSMUST00000058845:c.G259T:p.A87S 15qB1 NA NA chr15 25294406 CGGxCTT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.99416 0.999768 0.994391 105 0 0 68.684378 0.333333 0.02 0.932327 58 29 1645 789 60 60 0 0 CC 3.909488 13 0 351 0 KEEP - Basp1 YES AFB1_3 chr15 25740232 25740232 C T exonic Myo10 nonsynonymous SNV NM_019472:c.C6014T:p.S2005L exonic Myo10 nonsynonymous SNV uc007vje.1:c.C3776T:p.S1259L exonic ENSMUSG00000022272 nonsynonymous SNV ENSMUST00000022882:c.C3776T:p.S1259L 15qB1 NA NA chr15 25740232 TCTxGTT C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 78 0 0 8.259873 0.137931 0.02 -0.254234 25 4 674 114 60 60 0 0 CC 12.907502 43 0 1058 0 KEEP + Myo10 NO AFB1_3 chr15 43083160 43083160 C A exonic Eif3e nonsynonymous SNV NM_008388:c.G1165T:p.G389C exonic Eif3e nonsynonymous SNV uc007vpj.1:c.G1018T:p.G340C exonic ENSMUSG00000022336 nonsynonymous SNV ENSMUST00000022960:c.G1165T:p.G389C 15qB3.2 NA NA chr15 43083160 GACxCTG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 50 0 0 25.08968 0.416667 0.02 -0.210463 14 10 402 274 60 60 0 0 CC 5.715334 19 0 535 0 KEEP - Eif3e YES AFB1_3 chr15 54675978 54675978 A T exonic Enpp2 nonsynonymous SNV NM_015744:c.T2374A:p.S792T exonic Enpp2 nonsynonymous SNV uc007vro.2:c.T2374A:p.S792T exonic ENSMUSG00000022425 nonsynonymous SNV ENSMUST00000041591:c.T2374A:p.S792T 15qD1 NA NA chr15 54675978 AAGxAGA A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 69 0 0 8.364077 0.2 0.02 -0.175386 16 4 456 108 60 60 0 0 AA 11.729556 39 0 1078 0 KEEP - Enpp2 NO AFB1_3 chr15 71284234 71284234 G T intronic Fam135b NA NA intronic Fam135b NA NA intronic ENSMUSG00000036800 NA NA 15qD3 NA NA chr15 71284234 ACAxGTC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 66 0 0 21.192972 0.310345 0.02 -0.254328 20 9 590 247 60 60 0 0 GG 9.015411 30 0 843 0 KEEP - Fam135b YES AFB1_3 chr15 71795133 71795133 A C intronic Col22a1 NA NA intronic Col22a1 NA NA intronic ENSMUSG00000079022 NA NA 15qD3 NA NA chr15 71795133 GTAxGAT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.919883 0.92664 0.992708 55 0 0 22.892544 0.266667 0.02 -0.394538 33 12 946 285 60 60 0 0 AA 3.008132 10 0 283 0 KEEP - Col22a1 NO AFB1_3 chr15 75937148 75937148 C T exonic Eppk1 nonsynonymous SNV NM_144848:c.G5962A:p.D1988N exonic Eppk1 nonsynonymous SNV uc007wio.1:c.G5962A:p.D1988N intergenic "ENSMUSG00000075590(dist=16705),ENSMUSG00000044361(dist=12799)" NA NA 15qD3 NA NA chr15 75937148 GGTxTTT C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 37 0 0 6.57282 0.2 0.02 -0.131546 12 3 345 84 60 60 0 0 CC 5.414709 18 0 512 0 KEEP - Eppk1 NO AFB1_3 chr15 78170986 78170986 C T exonic Csf2rb synonymous SNV NM_007780:c.C513T:p.D171D exonic Csf2rb synonymous SNV uc007wpa.2:c.C513T:p.D171D exonic ENSMUSG00000071713 synonymous SNV ENSMUST00000096355:c.C513T:p.D171D 15qE1 "Score=0.911766;Name=No.57810,chr15:78111728" NA chr15 78170986 GGAxATA C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 155 0 7 7.014994 0.086957 0.02 -0.403386 42 4 1182 110 60 22 0 0 CC 28.874758 96 0 2719 0 KEEP + Csf2rb NO AFB1_3 chr15 79833850 79833850 G A intronic Pdgfb NA NA intronic Pdgfb NA NA intronic ENSMUSG00000000489 NA NA 15qE1 NA NA chr15 79833850 GCAxGGG G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 69 0 0 9.263156 0.210526 0.02 -0.175396 15 4 428 116 60 60 0 0 GG 13.22336 44 0 1230 0 KEEP - Pdgfb NO AFB1_3 chr15 81700831 81700831 A C exonic Phf5a nonsynonymous SNV NM_026737:c.T174G:p.C58W exonic Phf5a nonsynonymous SNV uc007wxo.1:c.T174G:p.C58W exonic ENSMUSG00000061360 nonsynonymous SNV ENSMUST00000023117:c.T174G:p.C58W 15qE1 NA NA chr15 81700831 TACxCAC A C AFB1_3_GATCAG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.64132 0.641347 0.999957 40 7 0 9.98417 0.178571 0.02 -0.245489 23 5 618 133 60 37 0 0 AA 7.820436 26 0 724 0 KEEP - Phf5a NO AFB1_3 chr15 81702309 81702309 G T UTR5 Phf5a NA NA UTR5 Phf5a NA NA UTR5 ENSMUSG00000061360 NA NA 15qE1 NA NA chr15 81702309 CAAxCCG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 90 9 0 27.261698 0.24 0.02 -0.438489 38 12 1097 335 60 37 0 0 GG 12.929135 43 0 1169 0 KEEP - Phf5a YES AFB1_3 chr15 81702323 81702323 G A upstream "Aco2,Phf5a" NA NA upstream "Aco2,Phf5a" NA NA UTR5 ENSMUSG00000061360 NA NA 15qE1 NA NA chr15 81702323 GAAxCTT G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 61 4 0 7.859855 0.137931 0.02 -0.25432 25 4 716 110 60 25 0 0 GG 9.577626 32 0 833 0 KEEP NA Aco2 NO AFB1_3 chr15 88915968 88915968 A C exonic Trabd nonsynonymous SNV NM_026485:c.A854C:p.K285T exonic Trabd nonsynonymous SNV uc007xfc.1:c.A854C:p.K285T exonic ENSMUSG00000015363 nonsynonymous SNV ENSMUST00000081702:c.A854C:p.K285T 15qE3 NA NA chr15 88915968 GGAxGTG A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 157 0 0 26.89863 0.324324 0.02 -0.324438 25 12 719 313 60 60 0 0 AA 29.741907 99 0 2726 0 KEEP + Trabd NO AFB1_3 chr15 90509631 90509631 G T exonic Cpne8 synonymous SNV NM_001033851:c.C105A:p.P35P exonic Cpne8 synonymous SNV uc007xhn.1:c.C105A:p.P35P exonic ENSMUSG00000052560 synonymous SNV ENSMUST00000014777:c.C105A:p.P35P 15qE3 NA NA chr15 90509631 GGCxGGG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.490476 0.490544 0.99986 45 1 0 7.083498 0.230769 0.02 -0.201517 10 3 238 87 60 37 0 0 GG 5.70921 19 0 481 0 KEEP - Cpne8 YES AFB1_3 chr15 90824269 90824269 C G exonic Kif21a nonsynonymous SNV NM_001109040:c.G766C:p.E256Q exonic Kif21a nonsynonymous SNV uc007xhs.2:c.G766C:p.E256Q exonic ENSMUSG00000022629 nonsynonymous SNV ENSMUST00000067205:c.G766C:p.E256Q 15qE3 NA NA chr15 90824269 ATTxGGA C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 67 0 0 10.20274 0.172414 0.02 -0.254122 24 5 592 136 60 60 0 0 CC 9.613816 32 0 800 0 KEEP - Kif21a NO AFB1_3 chr15 97514230 97514230 T A intronic Rpap3 NA NA intronic Rpap3 NA NA intronic ENSMUSG00000022466 NA NA 15qF1 NA NA chr15 97514230 CAAxGGC T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.954475 0.959859 0.994391 64 0 0 42.591282 0.34 0.02 -0.438454 33 17 917 484 60 60 0 0 TT 3.909178 13 0 345 0 KEEP - Rpap3 NO AFB1_3 chr15 97817823 97817823 A G intronic Col2a1 NA NA intronic Col2a1 NA NA intronic ENSMUSG00000022483 NA NA 15qF1 NA NA chr15 97817823 GGGxGGG A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 97 0 0 7.377229 0.210526 0.02 -0.382329 30 8 746 120 60 60 0 0 AA 15.338397 51 0 1396 0 KEEP - Col2a1 NO AFB1_3 chr15 98477566 98477566 C T intronic Ddx23 NA NA intronic Ddx23 NA NA intronic ENSMUSG00000003360 NA NA 15qF1 NA NA chr15 98477566 GGGxTGG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 149 0 0 19.861839 0.264706 0.02 -0.298146 25 9 707 241 60 60 0 0 CC 27.962926 93 0 2548 0 KEEP - Ddx23 NO AFB1_3 chr16 13416704 13416704 G C UTR3 Mkl2 NA NA UTR3 Mkl2 NA NA UTR3 ENSMUSG00000009569 NA NA 16qA1 NA NA chr16 13416704 TTGxCAA G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 74 0 0 20.382642 0.333333 0.02 -0.210481 16 8 460 232 60 60 0 0 GG 13.232848 44 0 1199 0 KEEP + Mkl2 NO AFB1_3 chr16 14232765 14232765 G C exonic Myh11 nonsynonymous SNV NM_001161775:c.C1428G:p.I476M exonic Myh11 nonsynonymous SNV uc007yhd.2:c.C1428G:p.I476M exonic ENSMUSG00000018830 nonsynonymous SNV ENSMUST00000077248:c.C1464G:p.I488M 16qA1 NA NA chr16 14232765 GTTxATG G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 153 1 2 13.903237 0.107692 0.02 1.223458 58 7 1704 202 60 60 0 0 GG 22.244395 74 0 2087 0 KEEP - Myh11 NO AFB1_3 chr16 15809843 15809843 T A exonic Prkdc nonsynonymous SNV NM_011159:c.T10271A:p.L3424H exonic Prkdc nonsynonymous SNV uc007yht.1:c.T10271A:p.L3424H exonic ENSMUSG00000022672 nonsynonymous SNV ENSMUST00000023352:c.T10271A:p.L3424H 16qA2 NA NA chr16 15809843 AACxCCG T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 67 0 0 19.354919 0.380952 0.02 -0.184141 13 8 364 216 60 60 0 0 TT 10.827655 36 0 999 0 KEEP + Prkdc NO AFB1_3 chr16 17567837 17567837 C A exonic P2rx6 nonsynonymous SNV NM_001159561:c.C508A:p.H170N exonic P2rx6 nonsynonymous SNV uc007yli.2:c.C508A:p.H170N exonic ENSMUSG00000022758 nonsynonymous SNV ENSMUST00000023441:c.C508A:p.H170N 16qA3 NA NA chr16 17567837 ACCxACA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.693605 0.693668 0.999909 57 0 0 18.962505 0.266667 0.02 -0.263094 22 8 632 227 60 60 0 0 CC 7.218992 24 0 674 0 KEEP + P2rx6 YES AFB1_3 chr16 32752325 32752325 C T exonic Muc4 nonsynonymous SNV NM_080457:c.C2116T:p.P706S exonic Muc4 nonsynonymous SNV uc012aeq.1:c.C2116T:p.P706S exonic ENSMUSG00000079620 nonsynonymous SNV ENSMUST00000096106:c.C2116T:p.P706S 16qB3 "Score=0.914754;Name=No.61897,chr16:32754252" NA chr16 32752325 AATxCTC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 388 18 30 13.61242 0.101449 0.02 1.090064 62 7 1824 201 60 37 0 0 CC 75.802791 262 1 7342 28 KEEP + Muc4 NO AFB1_3 chr16 36918059 36918059 G T exonic Golgb1 nonsynonymous SNV NM_030035:c.G6796T:p.A2266S exonic Golgb1 nonsynonymous SNV uc007zdh.2:c.G6796T:p.A2266S exonic ENSMUSG00000034243 nonsynonymous SNV ENSMUST00000039855:c.G6796T:p.A2266S 16qB3 NA NA chr16 36918059 AAGxCTT G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999107 0.99911 0.999997 121 1 0 75.739995 0.384615 0.02 1.002441 48 30 1366 840 60 60 0 0 GG 9.624032 32 0 879 0 KEEP + Golgb1 YES AFB1_3 chr16 63863753 63863753 C A intronic Epha3 NA NA intronic Epha3 NA NA intronic ENSMUSG00000052504 NA NA 16qC1.3 NA NA chr16 63863753 CCGxTCC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 112 1 0 16.263514 0.269231 0.02 -0.228007 19 7 542 195 60 60 0 0 CC 22.830812 76 0 2069 0 KEEP - Epha3 YES AFB1_3 chr16 64857098 64857098 T G UTR3 Cggbp1 NA NA UTR3 Cggbp1 NA NA UTR3 ENSMUSG00000054604 NA NA 16qC1.3 NA NA chr16 64857098 GTTxAGT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 157 1 0 26.141623 0.110169 0.02 2.453963 105 13 2970 377 60 60 0 0 TT 11.728354 39 0 1047 0 KEEP + Cggbp1 NO AFB1_3 chr16 75909371 75909371 T G intronic Samsn1 NA NA intronic Samsn1 NA NA intronic ENSMUSG00000022876 NA NA 16qC3.1 NA NA chr16 75909371 AACxTAC T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 64 0 0 8.562706 0.192308 0.02 -0.227971 21 5 605 117 60 60 0 0 TT 9.023626 30 0 841 0 KEEP - Samsn1 NO AFB1_3 chr17 12881909 12881909 C A exonic Igf2r synonymous SNV NM_010515:c.G6393T:p.T2131T exonic Igf2r synonymous SNV uc008aky.1:c.G6393T:p.T2131T exonic ENSMUSG00000023830 synonymous SNV ENSMUST00000024599:c.G6393T:p.T2131T 17qA1 NA NA chr17 12881909 GAGxGTT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.612327 0.612407 0.999869 51 0 0 16.731919 0.259259 0.02 -0.236705 20 7 527 201 60 60 0 0 CC 6.269824 21 0 493 0 KEEP - Igf2r YES AFB1_3 chr17 21857957 21857957 A G exonic Zfp760 nonsynonymous SNV NM_001008501:c.A62G:p.E21G exonic Zfp760 nonsynonymous SNV uc008arf.2:c.A62G:p.E21G exonic ENSMUSG00000067928 nonsynonymous SNV ENSMUST00000115541:c.A62G:p.E21G 17qA3.3 NA NA chr17 21857957 AGGxGTG A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 165 1 0 21.958162 0.163934 0.02 1.160278 51 10 1456 290 60 60 0 0 AA 25.260079 84 0 2317 0 KEEP + Zfp760 NO AFB1_3 chr17 24368740 24368740 C A exonic Ccnf nonsynonymous SNV NM_007634:c.G1208T:p.G403V exonic Ccnf nonsynonymous SNV uc008ave.1:c.G1208T:p.G403V exonic ENSMUSG00000072082 nonsynonymous SNV ENSMUST00000073425:c.G1208T:p.G403V 17qA3.3 NA NA chr17 24368740 TTCxCTT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.977343 0.984161 0.993072 69 0 0 48.614766 0.344828 0.02 1.186616 38 20 1075 553 60 60 0 0 CC 3.308656 11 0 306 0 KEEP - Ccnf YES AFB1_3 chr17 25224987 25224987 A T exonic Ift140 nonsynonymous SNV NM_134126:c.A2750T:p.D917V exonic Ift140 nonsynonymous SNV uc008azo.2:c.A491T:p.D164V exonic ENSMUSG00000024169 nonsynonymous SNV ENSMUST00000168261:c.A176T:p.D59V 17qA3.3 NA NA chr17 25224987 CTGxCTG A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05402 0.054137 0.997832 29 0 0 10.599378 0.5 0.02 -0.070148 4 4 109 111 60 60 0 0 AA 4.811785 16 0 432 0 KEEP + Ift140 NO AFB1_3 chr17 30664307 30664307 C A exonic Btbd9 nonsynonymous SNV NM_027060:c.G489T:p.M163I exonic Btbd9 nonsynonymous SNV uc008btt.2:c.G489T:p.M163I exonic ENSMUSG00000062202 nonsynonymous SNV ENSMUST00000079924:c.G489T:p.M163I 17qA3.3 NA NA chr17 30664307 GAAxATG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 213 0 0 7.535609 0.093023 0.02 -0.377071 39 4 1088 114 60 60 0 0 CC 43.619236 145 0 4142 0 KEEP - Btbd9 YES AFB1_3 chr17 3159189 3159189 A T exonic Scaf8 synonymous SNV NM_134123:c.A186T:p.G62G exonic "Rbm16,Scaf8" synonymous SNV uc008aej.2:c.A186T:p.G62G exonic ENSMUSG00000046201 synonymous SNV ENSMUST00000076734:c.A186T:p.G62G 17qA1 NA NA chr17 3159189 TGGxCTA A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 135 0 0 32.185163 0.351351 0.02 -0.324452 24 13 666 364 60 60 0 0 AA 24.659249 82 0 2237 0 KEEP + Scaf8 NO AFB1_3 chr17 32514722 32514722 T G intronic Wiz NA NA exonic Wiz nonsynonymous SNV uc008bwt.2:c.A982C:p.S328R exonic ENSMUSG00000024050 nonsynonymous SNV ENSMUST00000003725:c.A982C:p.S328R 17qB1 NA NA chr17 32514722 GGCxCAT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 188 4 0 20.078156 0.285714 0.02 -0.306762 25 10 676 244 60 60 0 0 TT 35.489908 118 0 3280 0 KEEP - Wiz NO AFB1_3 chr17 32530891 32530891 A T intronic Rasal3 NA NA intronic Rasal3 NA NA intronic ENSMUSG00000052142 NA NA 17qB1 NA NA chr17 32530891 CTGxGTT A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 105 1 0 19.647021 0.230769 0.02 -0.34201 30 9 860 245 60 60 0 0 AA 18.649335 62 0 1737 0 KEEP - Rasal3 NO AFB1_3 chr17 33019948 33019948 C A exonic Zfp870 nonsynonymous SNV NM_207245:c.G1354T:p.G452W exonic Zfp870 nonsynonymous SNV uc008bxp.2:c.G1354T:p.G452W exonic ENSMUSG00000057254 nonsynonymous SNV ENSMUST00000077984:c.G1351T:p.G451W 17qB1 NA NA chr17 33019948 TCCxACA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 92 2 0 40.807522 0.363636 0.02 -0.385872 28 16 804 457 60 60 0 0 CC 11.731539 39 0 1103 0 KEEP - Zfp870 YES AFB1_3 chr17 3439737 3439737 A C exonic Tiam2 nonsynonymous SNV NM_001122998:c.A2392C:p.T798P exonic Tiam2 nonsynonymous SNV uc008aeo.1:c.A2392C:p.T798P exonic ENSMUSG00000023800 nonsynonymous SNV ENSMUST00000072156:c.A2392C:p.T798P 17qA1 NA NA chr17 3439737 GGAxCTC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 165 0 0 15.177906 0.4 0.02 -0.131527 9 6 245 167 60 60 0 0 AA 35.460255 118 0 3219 0 KEEP + Tiam2 NO AFB1_3 chr17 34997804 34997804 T G exonic Cfb nonsynonymous SNV NM_001142706:c.A559C:p.T187P exonic Cfb nonsynonymous SNV uc008cdy.2:c.A559C:p.T187P exonic "ENSMUSG00000090231,ENSMUSG00000092511" nonsynonymous SNV ENSMUST00000025229:c.A559C:p.T187P 17qB1 NA NA chr17 34997804 AAGxAAC T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.877584 0.877708 0.999859 60 1 0 12.524787 0.15 0.02 -0.350728 34 6 921 170 60 60 0 0 TT 5.412049 18 0 471 0 KEEP - Cfb NO AFB1_3 chr17 34997806 34997806 A G exonic Cfb nonsynonymous SNV NM_001142706:c.T557C:p.V186A exonic Cfb nonsynonymous SNV uc008cdy.2:c.T557C:p.V186A exonic "ENSMUSG00000090231,ENSMUSG00000092511" nonsynonymous SNV ENSMUST00000025229:c.T557C:p.V186A 17qB1 NA NA chr17 34997806 GTAxCAA A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.877584 0.877708 0.999859 60 1 0 13.223585 0.15 0.02 -0.350769 34 6 951 177 60 60 0 0 AA 5.411997 18 0 482 0 KEEP - Cfb NO AFB1_3 chr17 35160431 35160431 A C exonic Vwa7 nonsynonymous SNV NM_138582:c.A1628C:p.K543T exonic D17H6S56E-3 nonsynonymous SNV uc008cfa.1:c.A1628C:p.K543T exonic ENSMUSG00000007030 nonsynonymous SNV ENSMUST00000007245:c.A1628C:p.K543T 17qB1 NA NA chr17 35160431 TCAxGAG A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 90 1 0 11.138068 0.333333 0.02 -0.131516 10 5 282 129 60 60 0 0 AA 22.256323 74 0 2055 0 KEEP + Vwa7 NO AFB1_3 chr17 35400976 35400976 A T exonic "H2-D1,H2-L" nonsynonymous SNV NM_010380:c.A536T:p.H179L exonic H2-D1 nonsynonymous SNV uc008chg.1:c.A536T:p.H179L exonic ENSMUSG00000073411 nonsynonymous SNV ENSMUST00000087173:c.A536T:p.H179L 17qB1 "Score=0.916841;Name=No.65635,chr17:34130870" NA chr17 35400976 AGCxTTA A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 231 1 0 12.037438 0.074468 0.02 0.870945 87 7 2417 195 60 29 0 0 AA 35.781793 119 0 3180 0 KEEP NA H2-D1 NO AFB1_3 chr17 35400977 35400977 T A exonic "H2-D1,H2-L" nonsynonymous SNV NM_010380:c.T537A:p.H179Q exonic H2-D1 nonsynonymous SNV uc008chg.1:c.T537A:p.H179Q exonic ENSMUSG00000073411 nonsynonymous SNV ENSMUST00000087173:c.T537A:p.H179Q 17qB1 "Score=0.916841;Name=No.65635,chr17:34130870" NA chr17 35400977 GCAxTAC T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 232 1 0 11.639583 0.074468 0.02 0.773029 87 7 2460 191 60 29 0 0 TT 36.391771 121 0 3318 0 KEEP NA H2-D1 NO AFB1_3 chr17 36067591 36067591 C G exonic Ppp1r10 nonsynonymous SNV NM_001163818:c.C2312G:p.P771R exonic Ppp1r10 nonsynonymous SNV uc008cjj.2:c.C2312G:p.P771R exonic ENSMUSG00000039220 nonsynonymous SNV ENSMUST00000087211:c.C2312G:p.P771R 17qB1 "Score=0.953791;Name=No.67359,chr5:30132998" NA chr17 36067591 GCCxTGG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 109 2 0 30.148284 0.285714 0.02 -0.42965 35 14 1010 362 60 60 0 0 CC 14.7393 49 0 1380 0 KEEP + Ppp1r10 NO AFB1_3 chr17 36220723 36220723 T C exonic H2-Bl unknown UNKNOWN exonic H2-Bl synonymous SNV uc012asc.1:c.A276G:p.E92E exonic ENSMUSG00000073406 synonymous SNV ENSMUST00000025333:c.A252G:p.E84E 17qB1 "Score=0.951462;Name=No.65666,chr17:36245854" NA chr17 36220723 TGTxTCC T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 764 9 1 19.271324 0.051643 0.02 5.307564 202 11 5701 328 60 37 0 0 TT 139.426862 464 0 12592 0 KEEP - H2-Bl NO AFB1_3 chr17 46557440 46557440 G C exonic Zfp318 nonsynonymous SNV NM_021346:c.G3419C:p.R1140T exonic Zfp318 nonsynonymous SNV uc008csr.2:c.G3419C:p.R1140T exonic ENSMUSG00000015597 nonsynonymous SNV ENSMUST00000047394:c.G2783C:p.R928T 17qC NA NA chr17 46557440 ATAxAAA G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.963773 0.963774 0.999999 91 0 0 27.643847 0.235294 0.02 1.247949 39 12 1139 340 60 60 0 0 GG 10.517258 35 0 992 0 KEEP + Zfp318 NO AFB1_3 chr17 47120178 47120178 C T exonic Ubr2 nonsynonymous SNV NM_001177374:c.G977A:p.G326E exonic Ubr2 nonsynonymous SNV uc008cup.2:c.G977A:p.G326E exonic ENSMUSG00000023977 nonsynonymous SNV ENSMUST00000113335:c.G977A:p.G326E 17qC NA NA chr17 47120178 TATxCAA C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 0.999999 123 1 0 20.353146 0.135135 0.02 1.046276 64 10 1842 283 60 60 0 0 CC 10.823848 36 0 1010 0 KEEP - Ubr2 NO AFB1_3 chr17 53585101 53585101 C A exonic Efhb nonsynonymous SNV NM_172497:c.G1317T:p.L439F exonic Efhb nonsynonymous SNV uc008czm.1:c.G35T:p.C12F exonic ENSMUSG00000023931 nonsynonymous SNV ENSMUST00000024725:c.G1317T:p.L439F 17qC NA NA chr17 53585101 GTAxAAA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 54 0 0 10.193209 0.333333 0.02 -0.105163 8 4 213 116 60 60 0 0 CC 11.129847 37 0 1045 0 KEEP - Efhb YES AFB1_3 chr17 57559803 57559803 C T exonic Emr1 stopgain SNV NM_010130:c.C1309T:p.Q437X exonic Emr1 stopgain SNV uc008det.2:c.C1309T:p.Q437X exonic ENSMUSG00000004730 stopgain SNV ENSMUST00000004850:c.C1309T:p.Q437X 17qD NA NA chr17 57559803 GAGxAAG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.384517 0.387407 0.99254 32 0 0 11.002299 0.25 0.02 -0.175383 15 5 425 135 60 60 0 0 CC 2.707191 9 0 253 0 KEEP + Emr1 NO AFB1_3 chr17 71455652 71455652 G T exonic Myom1 nonsynonymous SNV NM_001083934:c.G3625T:p.A1209S exonic Myom1 nonsynonymous SNV uc008dly.1:c.G3625T:p.A1209S exonic ENSMUSG00000024049 nonsynonymous SNV ENSMUST00000024847:c.G3625T:p.A1209S 17qE1.3 NA NA chr17 71455652 AAAxCAA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 142 0 0 19.223307 0.195652 0.02 -0.403406 37 9 1068 248 60 60 0 0 GG 24.060676 80 0 2237 0 KEEP + Myom1 YES AFB1_3 chr17 75010453 75010453 A C exonic Birc6 nonsynonymous SNV NM_007566:c.A5517C:p.E1839D exonic Birc6 nonsynonymous SNV uc008dog.1:c.A1530C:p.E510D exonic ENSMUSG00000024073 nonsynonymous SNV ENSMUST00000024879:c.A5433C:p.E1811D 17qE2 NA NA chr17 75010453 AGAxGTA A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 124 0 0 55.115261 0.45098 0.02 1.239313 28 23 797 594 60 60 0 0 AA 17.747432 59 0 1659 0 KEEP + Birc6 NO AFB1_3 chr17 88118777 88118777 T A exonic Msh2 nonsynonymous SNV NM_008628:c.T2360A:p.L787H exonic Msh2 nonsynonymous SNV uc008dvb.1:c.T2360A:p.L787H exonic ENSMUSG00000024151 nonsynonymous SNV ENSMUST00000024967:c.T2360A:p.L787H 17qE4 NA NA chr17 88118777 AACxTAC T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 99 2 0 10.056375 0.142857 0.02 -0.306943 30 5 863 139 60 60 0 0 TT 15.641713 52 0 1460 0 KEEP + Msh2 NO AFB1_3 chr18 38412586 38412586 T C exonic 0610009O20Rik nonsynonymous SNV NM_024179:c.T376C:p.F126L exonic 0610009O20Rik nonsynonymous SNV uc008erx.2:c.T376C:p.F126L exonic ENSMUSG00000024442 nonsynonymous SNV ENSMUST00000025314:c.T376C:p.F126L 18qB3 NA NA chr18 38412586 CGCxTCC T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 58 0 0 10.184948 0.4 0.02 -0.087698 6 4 174 112 60 60 0 0 TT 11.731454 39 0 1099 0 KEEP + 0610009O20Rik NO AFB1_3 chr18 59192664 59192664 C A exonic Adamts19 stopgain SNV NM_175506:c.C3273A:p.C1091X exonic Adamts19 stopgain SNV uc008ezs.1:c.C3273A:p.C1091X exonic ENSMUSG00000053441 stopgain SNV ENSMUST00000052907:c.C3273A:p.C1091X 18qD3 NA NA chr18 59192664 ATGxTAC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 70 1 0 19.936388 0.28125 0.02 -0.280565 23 9 669 239 60 60 0 0 CC 10.215093 34 0 939 0 KEEP + Adamts19 YES AFB1_3 chr18 74836303 74836303 G T exonic Myo5b nonsynonymous SNV NM_201600:c.G1801T:p.A601S exonic Myo5b nonsynonymous SNV uc008fpp.1:c.G1801T:p.A601S exonic ENSMUSG00000025885 nonsynonymous SNV ENSMUST00000074157:c.G1801T:p.A601S 18qE2 NA NA chr18 74836303 CCAxCCA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 91 0 0 21.293341 0.310345 0.02 -0.254314 20 9 575 248 60 60 0 0 GG 16.235279 54 0 1503 0 KEEP + Myo5b YES AFB1_3 chr18 80325829 80325829 G C exonic Adnp2 nonsynonymous SNV NM_175028:c.C2103G:p.C701W exonic Adnp2 nonsynonymous SNV uc008fsk.1:c.C2103G:p.C701W exonic ENSMUSG00000053950 nonsynonymous SNV ENSMUST00000066743:c.C2103G:p.C701W 18qE3 NA NA chr18 80325829 GTTxCAA G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 105 0 0 21.761876 0.264706 0.02 -0.306947 25 9 718 260 60 60 0 0 GG 18.924048 63 0 1754 0 KEEP - Adnp2 NO AFB1_3 chr18 86885795 86885795 A C intronic Cbln2 NA NA intronic Cbln2 NA NA intronic ENSMUSG00000024647 NA NA 18qE4 NA NA chr18 86885795 GTAxGTT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196309 0.196312 0.999988 45 0 0 10.620317 0.357143 0.02 -0.122738 9 5 258 122 60 60 0 0 AA 8.121235 27 0 758 0 KEEP + Cbln2 NO AFB1_3 chr18 89375951 89375951 T G intronic Cd226 NA NA ncRNA_intronic dnam-1 NA NA intronic ENSMUSG00000034028 NA NA 18qE4 NA NA chr18 89375951 TTTxTTT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 104 0 0 18.248404 0.228571 0.02 -0.30694 27 8 773 226 60 60 0 1 TT 15.34057 51 0 1425 0 KEEP + Cd226 NO AFB1_3 chr19 16819296 16819296 C G exonic Vps13a nonsynonymous SNV NM_173028:c.G1141C:p.E381Q exonic Vps13a nonsynonymous SNV uc008gwv.1:c.G1141C:p.E381Q exonic ENSMUSG00000046230 nonsynonymous SNV ENSMUST00000068156:c.G1141C:p.E381Q 19qB NA NA chr19 16819296 TTTxAGG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999909 1 0.999909 245 1 0 77.513947 0.163551 0.02 5.396023 179 35 5205 1022 60 60 0 0 CC 7.22017 24 0 693 0 KEEP - Vps13a NO AFB1_3 chr19 23750837 23750837 A G intergenic "1700028P14Rik(dist=23535),Ptar1(dist=11053)" NA NA intergenic "1700028P14Rik(dist=23535),Ptar1(dist=11053)" NA NA ncRNA_exonic ENSMUSG00000051255 NA NA 19qB NA NA chr19 23750837 GAAxGTC A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 265 2 1 50.147892 0.186992 0.02 2.598329 100 23 2867 649 60 60 0 0 AA 34.590227 115 0 3211 0 KEEP NA 1700028P14Rik NO AFB1_3 chr19 26705339 26705339 C A exonic Smarca2 nonsynonymous SNV NM_011416:c.C535A:p.L179M exonic Smarca2 nonsynonymous SNV uc008hbn.1:c.C535A:p.L179M exonic ENSMUSG00000024921 nonsynonymous SNV ENSMUST00000025862:c.C535A:p.L179M 19qC1 NA NA chr19 26705339 CAGxTGC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.490485 0.490544 0.999879 47 0 0 22.606592 0.391304 0.02 -0.201708 14 9 413 250 60 60 0 0 CC 6.608416 22 0 606 0 KEEP + Smarca2 YES AFB1_3 chr19 27312720 27312720 G C exonic Vldlr nonsynonymous SNV NM_001161420:c.G626C:p.S209T exonic Vldlr nonsynonymous SNV uc008hbt.2:c.G626C:p.S209T exonic ENSMUSG00000024924 nonsynonymous SNV ENSMUST00000047645:c.G503C:p.S168T 19qC1 NA NA chr19 27312720 TCAxCTG G C AFB1_3_GATCAG 7-E185-R-P_1 0 DBSNP COVERED 0.612407 0.612407 1 93 0 0 25.241024 0.37037 0.02 -0.236784 17 10 491 282 60 60 0 0 GG 17.747164 59 0 1666 0 KEEP + Vldlr NO AFB1_3 chr19 28614825 28614825 A G exonic Glis3 synonymous SNV NM_175459:c.T462C:p.S154S exonic Glis3 synonymous SNV uc008hci.1:c.T462C:p.S154S exonic ENSMUSG00000052942 synonymous SNV ENSMUST00000159178:c.T462C:p.S154S 19qC1 NA NA chr19 28614825 GGGxCTG A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.712346 0.717315 0.993072 42 1 0 10.241857 0.16129 0.02 -0.271807 26 5 708 138 60 60 0 0 AA 3.308148 11 0 298 0 KEEP - Glis3 NO AFB1_3 chr19 4003592 4003592 A T exonic Doc2g nonsynonymous SNV NM_021791:c.A22T:p.S8C exonic Doc2g nonsynonymous SNV uc008fyd.1:c.A22T:p.S8C exonic ENSMUSG00000024871 nonsynonymous SNV ENSMUST00000025806:c.A22T:p.S8C 19qA NA NA chr19 4003592 GCCxGTG A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 109 2 0 13.554893 0.3 0.02 -0.175329 14 6 404 160 60 60 0 0 AA 24.027191 80 0 2142 0 KEEP + Doc2g NO AFB1_3 chr19 40641187 40641187 G C intronic Aldh18a1 NA NA intronic Aldh18a1 NA NA intronic ENSMUSG00000025007 NA NA 19qC3 NA NA chr19 40641187 CAGxCTG G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.78095 0.78106 0.99986 55 0 0 10.724299 0.147059 0.02 -0.298054 29 5 812 145 60 60 0 0 GG 5.699092 19 0 505 0 KEEP - Aldh18a1 NO AFB1_3 chr19 41859300 41859300 C A exonic Arhgap19 nonsynonymous SNV NM_001163495:c.G802T:p.A268S exonic Arhgap19 nonsynonymous SNV uc008hmh.2:c.G802T:p.A268S exonic ENSMUSG00000025154 nonsynonymous SNV ENSMUST00000026150:c.G802T:p.A268S 19qC3 NA NA chr19 41859300 GAGxAAG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 97 7 0 18.22546 0.205128 0.02 -0.342015 31 8 878 230 60 60 0 0 CC 14.139236 47 0 1352 0 KEEP - Arhgap19 YES AFB1_3 chr19 4200440 4200440 C A intronic Rad9a NA NA intronic Rad9 NA NA intronic ENSMUSG00000024824 NA NA 19qA NA NA chr19 4200440 GAAxTCT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 59 0 0 10.854768 0.2 0.02 -0.219242 20 5 576 139 60 60 0 0 CC 9.624518 32 0 883 0 KEEP - Rad9a YES AFB1_3 chr19 4201382 4201382 G T exonic Rad9a nonsynonymous SNV NM_011237:c.C52A:p.H18N exonic Rad9 nonsynonymous SNV uc008fzh.1:c.C52A:p.H18N exonic ENSMUSG00000024824 nonsynonymous SNV ENSMUST00000025740:c.C52A:p.H18N 19qA NA NA chr19 4201382 AATxGAC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 243 1 0 58.015303 0.458333 0.02 -0.420933 26 22 741 619 60 60 0 0 GG 50.212782 167 0 4693 0 KEEP - Rad9a YES AFB1_3 chr19 44149985 44149985 T G exonic Chuk nonsynonymous SNV NM_001162410:c.A2127C:p.E709D exonic Chuk nonsynonymous SNV uc008hpg.2:c.A2144C:p.N715T exonic ENSMUSG00000025199 nonsynonymous SNV ENSMUST00000026217:c.A2144C:p.N715T 19qC3 NA NA chr19 44149985 CAGxTCA T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 90 2 0 6.472944 0.2 0.02 -0.131539 12 3 339 83 60 37 0 0 TT 18.34758 61 0 1690 0 KEEP - Chuk NO AFB1_3 chr19 5142349 5142349 G A exonic Pacs1 nonsynonymous SNV NM_153129:c.C1993T:p.H665Y exonic Pacs1 nonsynonymous SNV uc008gcj.1:c.C1993T:p.H665Y exonic ENSMUSG00000024855 nonsynonymous SNV ENSMUST00000164003:c.C1594T:p.H532Y 19qA NA NA chr19 5142349 GATxAGA G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 95 0 0 12.984992 0.176471 0.02 -0.298186 28 6 818 170 60 60 0 0 GG 15.9386 53 0 1511 0 KEEP - Pacs1 NO AFB1_3 chr19 5286313 5286313 C T exonic Sf3b2 nonsynonymous SNV NM_030109:c.G1454A:p.R485H exonic Sf3b2 nonsynonymous SNV uc008gcm.2:c.G1454A:p.R485H exonic ENSMUSG00000024853 nonsynonymous SNV ENSMUST00000025774:c.G1454A:p.R485H 19qA NA NA chr19 5286313 TGGxGTG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 78 0 0 7.977742 0.125 0.02 -0.280481 28 4 718 113 60 60 0 0 CC 11.417879 38 0 949 0 KEEP - Sf3b2 NO AFB1_3 chr19 56797124 56797124 G T exonic Adrb1 nonsynonymous SNV NM_007419:c.G263T:p.R88L exonic Adrb1 nonsynonymous SNV uc008hze.2:c.G263T:p.R88L exonic ENSMUSG00000035283 nonsynonymous SNV ENSMUST00000038949:c.G263T:p.R88L 19qD2 NA NA chr19 56797124 CGCxGCT G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 102 0 0 8.715808 0.166667 0.02 -0.210354 20 4 505 115 60 60 0 0 GG 21.903575 73 0 1742 0 KEEP + Adrb1 YES AFB1_3 chr19 56865417 56865417 C A downstream A630007B06Rik NA NA downstream A630007B06Rik NA NA UTR3 ENSMUSG00000035173 NA NA 19qD2 NA NA chr19 56865417 GCTxTGT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 129 0 0 11.374829 0.12766 0.02 -0.412192 41 6 1200 163 60 60 0 0 CC 19.855203 66 0 1900 0 KEEP - A630007B06Rik YES AFB1_3 chr19 57686072 57686072 A C exonic Atrnl1 nonsynonymous SNV NM_181415:c.A229C:p.T77P exonic Atrnl1 nonsynonymous SNV uc008iai.2:c.A229C:p.T77P exonic ENSMUSG00000054843 nonsynonymous SNV ENSMUST00000059255:c.A229C:p.T77P 19qD2 NA NA chr19 57686072 TCCxCCT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 60 0 0 9.778326 0.347826 0.02 -0.199552 15 8 370 125 60 60 0 0 AA 6.296886 21 0 524 0 KEEP + Atrnl1 NO AFB1_3 chr19 59309306 59309306 G C exonic Kcnk18 nonsynonymous SNV NM_207261:c.G392C:p.G131A exonic Kcnk18 nonsynonymous SNV uc008ibh.1:c.G392C:p.G131A exonic ENSMUSG00000040901 nonsynonymous SNV ENSMUST00000065204:c.G392C:p.G131A 19qD3 NA NA chr19 59309306 ATGxCCA G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 184 2 0 14.330642 0.26087 0.02 -0.2017 17 6 482 172 60 60 0 0 GG 41.472034 138 0 3796 0 KEEP + Kcnk18 NO AFB1_3 chr19 7052803 7052803 A T intronic Fkbp2 NA NA intronic Fkbp2 NA NA intronic ENSMUSG00000056629 NA NA 19qA NA NA chr19 7052803 GGGxCCA A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 150 0 0 10.912945 0.294118 0.02 -0.149067 12 5 341 130 60 60 0 0 AA 35.152978 117 0 3167 0 KEEP - Fkbp2 NO AFB1_3 chr19 7856583 7856583 C G UTR3 Slc22a26 NA NA UTR3 BC014805 NA NA UTR3 ENSMUSG00000053303 NA NA 19qA NA NA chr19 7856583 AGGxCAA C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999852 0.999989 0.999863 127 1 0 85.630491 0.327103 0.02 2.452351 72 35 2023 983 60 60 0 0 CC 5.714371 19 0 518 0 KEEP - Slc22a26 NO AFB1_3 chr19 8963420 8963420 C T exonic 1810009A15Rik nonsynonymous SNV NM_025463:c.C5T:p.A2V exonic "1810009A15Rik,AK011444" nonsynonymous SNV uc008gns.1:c.G91A:p.A31T exonic ENSMUSG00000071653 nonsynonymous SNV ENSMUST00000096251:c.C5T:p.A2V 19qA NA NA chr19 8963420 TGGxACC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.970819 0.97082 0.999999 96 9 1 7.952212 0.096154 0.02 1.035241 47 5 1341 127 60 60 0 0 CC 10.527478 35 0 981 0 KEEP + 1810009A15Rik NO AFB1_3 chr1 109168582 109168582 T C exonic Serpinb3c nonsynonymous SNV NM_201363:c.A785G:p.K262R exonic Serpinb3c nonsynonymous SNV uc007chk.2:c.A785G:p.K262R exonic ENSMUSG00000073601 nonsynonymous SNV ENSMUST00000027565:c.A785G:p.K262R 1qE2.1 "Score=0.906139;Name=No.366,chr1:109003834" NA chr1 109168582 AACxTGG T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 91 0 0 14.687229 0.137255 0.02 1.346273 44 7 1256 202 60 60 0 0 TT 11.129417 37 0 1034 0 KEEP - Serpinb3c NO AFB1_3 chr1 131492238 131492238 G T exonic Thsd7b nonsynonymous SNV NM_172485:c.G431T:p.R144L exonic Thsd7b nonsynonymous SNV uc007clv.2:c.G431T:p.R144L exonic ENSMUSG00000042581 nonsynonymous SNV ENSMUST00000152305:c.G200T:p.R67L 1qE4 NA NA chr1 131492238 TGCxCTG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 94 0 0 33.511707 0.521739 0.02 -0.201658 11 12 286 347 60 60 0 0 GG 18.924616 63 0 1550 0 KEEP + Thsd7b YES AFB1_3 chr1 152584382 152584382 C A exonic Hmcn1 synonymous SNV NM_001024720:c.G4275T:p.A1425A exonic Hmcn1 synonymous SNV uc007cyj.1:c.G4275T:p.A1425A exonic ENSMUSG00000066842 synonymous SNV ENSMUST00000074783:c.G4275T:p.A1425A 1qG1 NA NA chr1 152584382 TCCxGCA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.948316 0.948402 0.999909 78 1 0 40.370062 0.333333 0.02 -0.420754 32 16 811 460 60 60 0 0 CC 7.216712 24 0 651 0 KEEP - Hmcn1 YES AFB1_3 chr1 152666493 152666493 A T exonic Hmcn1 synonymous SNV NM_001024720:c.T789A:p.P263P exonic Hmcn1 synonymous SNV uc007cyj.1:c.T789A:p.P263P exonic ENSMUSG00000066842 synonymous SNV ENSMUST00000074783:c.T789A:p.P263P 1qG1 NA NA chr1 152666493 GAAxGGA A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.818408 0.818465 0.999931 68 0 0 9.990938 0.138889 0.02 -0.315677 31 5 873 139 60 60 0 0 AA 7.520171 25 0 704 0 KEEP - Hmcn1 NO AFB1_3 chr1 154695786 154695786 C T exonic Smg7 synonymous SNV NM_001005507:c.G1773A:p.E591E exonic Smg7 synonymous SNV uc007czo.2:c.G1773A:p.E591E exonic ENSMUSG00000042772 synonymous SNV ENSMUST00000073441:c.G1773A:p.E591E 1qG3 NA NA chr1 154695786 GGTxTCA C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 349 4 0 8.392601 0.148148 0.02 -0.236798 23 4 674 114 60 60 0 0 CC 81.816931 272 0 7767 0 KEEP - Smg7 NO AFB1_3 chr1 154695787 154695787 T C exonic Smg7 nonsynonymous SNV NM_001005507:c.A1772G:p.E591G exonic Smg7 nonsynonymous SNV uc007czo.2:c.A1772G:p.E591G exonic ENSMUSG00000042772 nonsynonymous SNV ENSMUST00000073441:c.A1772G:p.E591G 1qG3 NA NA chr1 154695787 GTCxCAG T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 351 4 0 8.559273 0.137931 0.02 -0.254258 25 4 707 117 60 60 0 0 TT 80.63229 270 1 7565 5 KEEP - Smg7 NO AFB1_3 chr1 173489374 173489374 T C UTR5 Cd244 NA NA UTR5 Cd244 NA NA UTR5 ENSMUSG00000004709 NA NA 1qH3 NA NA chr1 173489374 TCCxGCT T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 134 0 0 13.627855 0.166667 0.02 -0.42093 35 7 1003 185 60 60 0 0 TT 24.656324 82 0 2262 0 KEEP + Cd244 NO AFB1_3 chr1 177908391 177908391 A C intronic Pld5 NA NA UTR3 B020018G12Rik NA NA UTR3 ENSMUSG00000078184 NA NA 1qH4 "Score=0.917349;Name=No.1111,chr2:103389954" NA chr1 177908391 AAAxGCA A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999852 0.999993 0.99986 137 0 8 34.195031 0.165138 0.02 2.238857 91 18 2611 468 60 60 0 0 AA 5.712617 19 0 516 0 KEEP - Pld5 NO AFB1_3 chr1 182682504 182682504 C A UTR3 Acbd3 NA NA UTR3 Acbd3 NA NA UTR3 ENSMUSG00000026499 NA NA 1qH4 NA NA chr1 182682504 GAGxTGC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.320398 0.322807 0.99254 27 0 0 8.868842 0.222222 0.02 -0.157858 14 4 406 111 60 60 0 0 CC 2.70731 9 0 255 0 KEEP + Acbd3 YES AFB1_3 chr1 188528607 188528607 G T exonic Tgfb2 nonsynonymous SNV NM_009367:c.C47A:p.P16Q exonic Tgfb2 nonsynonymous SNV uc007dzo.2:c.C47A:p.P16Q exonic ENSMUSG00000039239 nonsynonymous SNV ENSMUST00000045288:c.C47A:p.P16Q 1qH5 NA NA chr1 188528607 ACCxGGA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.979459 0.979526 0.999931 84 0 0 21.86515 0.178571 0.02 1.204145 46 10 1294 285 60 60 0 0 GG 7.516147 25 0 661 0 KEEP - Tgfb2 YES AFB1_3 chr1 193186200 193186200 C T exonic Ppp2r5a synonymous SNV NM_144880:c.G501A:p.L167L exonic Ppp2r5a synonymous SNV uc007eci.1:c.G501A:p.L167L exonic ENSMUSG00000026626 synonymous SNV ENSMUST00000067976:c.G501A:p.L167L 1qH6 NA NA chr1 193186200 TCTxAAG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 71 3 0 6.411017 0.166667 0.02 -0.157864 15 3 439 85 60 37 0 0 CC 12.334918 41 0 1194 0 KEEP - Ppp2r5a NO AFB1_3 chr1 195154185 195154185 G T exonic Lamb3 nonsynonymous SNV NM_001277928:c.G911T:p.G304V exonic Lamb3 nonsynonymous SNV uc007eek.1:c.G911T:p.G304V exonic ENSMUSG00000026639 nonsynonymous SNV ENSMUST00000016315:c.G911T:p.G304V 1qH6 NA NA chr1 195154185 AGGxCCA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 108 0 0 6.701366 0.25 0.02 -0.105231 9 3 256 82 60 60 0 0 GG 26.747053 89 0 2414 0 KEEP + Lamb3 YES AFB1_3 chr1 36853090 36853090 T G exonic Tmem131 synonymous SNV NM_018872:c.A4794C:p.T1598T exonic Tmem131 synonymous SNV uc007arc.1:c.A1080C:p.T360T exonic ENSMUSG00000026116 synonymous SNV ENSMUST00000027290:c.A4794C:p.T1598T 1qB NA NA chr1 36853090 AGGxGTT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387354 0.387407 0.999863 48 1 0 7.514745 0.3 0.02 -0.173373 14 6 352 100 60 60 0 0 TT 5.130349 19 1 477 5 KEEP - Tmem131 NO AFB1_3 chr1 40659793 40659793 G T exonic Slc9a4 nonsynonymous SNV NM_177084:c.G1076T:p.S359I exonic Slc9a4 nonsynonymous SNV uc007aul.1:c.G1076T:p.S359I exonic ENSMUSG00000026065 nonsynonymous SNV ENSMUST00000027233:c.G1076T:p.S359I 1qB NA NA chr1 40659793 TGAxCAG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 107 0 0 14.868831 0.352941 0.02 -0.149085 11 6 318 168 60 60 0 0 GG 20.753983 69 0 1937 0 KEEP + Slc9a4 YES AFB1_3 chr1 58302784 58302784 T C exonic Aox4 nonsynonymous SNV NM_023631:c.T1850C:p.V617A exonic Aox4 nonsynonymous SNV uc007bbo.1:c.T1850C:p.V617A exonic ENSMUSG00000038242 nonsynonymous SNV ENSMUST00000040442:c.T1850C:p.V617A 1qC1.3 NA NA chr1 58302784 TTGxCAC T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 75 0 0 8.88041 0.181818 0.02 -0.192926 18 4 508 115 60 60 0 0 TT 12.631833 42 0 1149 0 KEEP + Aox4 NO AFB1_3 chr1 75133052 75133052 G C exonic Cnppd1 nonsynonymous SNV NM_026977:c.C1145G:p.P382R exonic 1810031K17Rik nonsynonymous SNV uc007bnp.1:c.C1145G:p.P382R exonic ENSMUSG00000033159 nonsynonymous SNV ENSMUST00000168720:c.C1145G:p.P382R 1qC3 NA NA chr1 75133052 AATxGAG G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 64 0 0 6.582455 0.230769 0.02 -0.113996 10 3 284 82 60 60 0 0 GG 13.235101 44 0 1245 0 KEEP - Cnppd1 NO AFB1_3 chr1 75358967 75358967 A C exonic Des nonsynonymous SNV NM_010043:c.A716C:p.K239T exonic Des nonsynonymous SNV uc007box.1:c.A716C:p.K239T exonic ENSMUSG00000026208 nonsynonymous SNV ENSMUST00000027409:c.A716C:p.K239T 1qC4 NA NA chr1 75358967 TTAxGAA A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 68 0 0 6.996256 0.148148 0.02 -0.236732 23 4 654 100 60 60 0 0 AA 10.492415 35 0 950 0 KEEP + Des NO AFB1_3 chr1 82515618 82515618 G C exonic Col4a4 nonsynonymous SNV NM_007735:c.C1231G:p.P411A exonic Col4a4 nonsynonymous SNV uc007brt.1:c.C1231G:p.P411A exonic ENSMUSG00000067158 nonsynonymous SNV ENSMUST00000087027:c.C1231G:p.P411A 1qC5 NA NA chr1 82515618 CTGxAAA G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.813874 0.818465 0.994391 52 0 0 8.058944 0.111111 0.02 -0.315737 32 4 943 116 60 60 0 0 GG 3.910291 13 0 365 0 KEEP - Col4a4 NO AFB1_3 chr1 88255762 88255762 G T intronic Ncl NA NA intronic Ncl NA NA intronic ENSMUSG00000026234 NA NA 1qD NA NA chr1 88255762 TCGxCGC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 61 2 0 9.175996 0.363636 0.02 -0.096454 7 4 201 104 60 60 0 0 GG 12.0211 40 0 1086 0 KEEP - Ncl YES AFB1_3 chr1 90127348 90127348 C A exonic Mroh2a nonsynonymous SNV NM_001281466:c.C541A:p.L181M exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C541A:p.L181M exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000061013:c.C541A:p.L181M 1qD NA NA chr1 90127348 AAGxTGG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 249 2 0 9.081631 0.102041 0.02 -0.429681 44 5 1253 137 60 60 0 0 CC 48.729852 162 0 4605 0 KEEP + Mroh2a YES AFB1_3 chr1 9536453 9536453 C T exonic Rrs1 synonymous SNV NM_021511:c.C849T:p.D283D exonic Rrs1 synonymous SNV uc007agk.2:c.C849T:p.D283D exonic ENSMUSG00000061024 synonymous SNV ENSMUST00000072079:c.C849T:p.D283D 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536453 GGAxGTG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999365 0.999998 0.999366 147 2 12 11.700565 0.058824 0.02 2.347547 112 7 2804 199 60 23 0 0 CC 6.61039 22 0 547 0 KEEP + Rrs1 NO AFB1_3 chr1 9536458 9536458 C T exonic Rrs1 nonsynonymous SNV NM_021511:c.C854T:p.T285M exonic Rrs1 nonsynonymous SNV uc007agk.2:c.C854T:p.T285M exonic ENSMUSG00000061024 nonsynonymous SNV ENSMUST00000072079:c.C854T:p.T285M 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536458 TGAxGAG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999358 0.999992 0.999366 137 2 12 10.093469 0.055046 0.02 2.435159 103 6 2588 173 60 23 0 0 CC 6.514953 22 0 511 0 KEEP + Rrs1 NO AFB1_3 chr2 109848317 109848317 A T exonic Lgr4 nonsynonymous SNV NM_172671:c.A1455T:p.E485D exonic Lgr4 nonsynonymous SNV uc008lmq.1:c.A1455T:p.E485D exonic ENSMUSG00000050199 nonsynonymous SNV ENSMUST00000111037:c.A1383T:p.E461D 2qE3 NA NA chr2 109848317 AGAxGAT A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 119 0 0 6.579682 0.1875 0.02 -0.140303 13 3 364 85 60 60 0 0 AA 25.567184 85 0 2376 0 KEEP + Lgr4 NO AFB1_3 chr2 118554216 118554216 T C upstream Plcb2 NA NA upstream Plcb2 NA NA upstream ENSMUSG00000040061 NA NA 2qE5 NA NA chr2 118554216 GGGxGGC T C AFB1_3_GATCAG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.882244 0.888875 0.99254 50 0 0 14.208009 0.170732 0.02 -0.359497 34 7 950 190 60 60 0 0 TT 2.707285 9 0 254 0 KEEP - Plcb2 NO AFB1_3 chr2 119590315 119590315 T G exonic Rpap1 nonsynonymous SNV NM_001163701:c.A4045C:p.S1349R exonic Rpap1 nonsynonymous SNV uc008lul.2:c.A4045C:p.S1349R exonic ENSMUSG00000034032 nonsynonymous SNV ENSMUST00000048493:c.A4045C:p.S1349R 2qE5 NA NA chr2 119590315 TACxCCT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 306 2 0 20.256662 0.321429 0.02 -0.245514 19 9 543 236 60 60 0 0 TT 65.231022 217 0 5982 0 KEEP - Rpap1 NO AFB1_3 chr2 121125960 121125960 G T exonic Map1a nonsynonymous SNV NM_001173506:c.G806T:p.G269V exonic Mtap1a nonsynonymous SNV uc008lyj.2:c.G806T:p.G269V exonic ENSMUSG00000027254 nonsynonymous SNV ENSMUST00000110639:c.G806T:p.G269V 2qE5 NA NA chr2 121125960 CGGxAAA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 57 0 0 6.70136 0.25 0.02 -0.105232 9 3 259 82 60 60 0 0 GG 12.622583 42 0 1154 0 KEEP + Map1a YES AFB1_3 chr2 124914479 124914479 A C UTR3 Myef2 NA NA UTR3 Myef2 NA NA UTR3 ENSMUSG00000027201 NA NA 2qF1 NA NA chr2 124914479 ACTxTCC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.920221 0.92664 0.993072 56 0 0 9.776296 0.111111 0.02 -0.394585 40 5 1101 142 60 60 0 0 AA 3.307633 11 0 291 0 KEEP - Myef2 NO AFB1_3 chr2 129977549 129977549 A C intronic Tgm6 NA NA intronic Tgm6 NA NA intronic ENSMUSG00000027403 NA NA 2qF1 NA NA chr2 129977549 GTAxGTG A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.78095 0.78106 0.99986 58 0 0 15.563288 0.235294 0.02 -0.298126 26 8 750 198 60 60 0 0 AA 5.715033 19 0 530 0 KEEP + Tgm6 NO AFB1_3 chr2 135213591 135213591 C G exonic Plcb1 nonsynonymous SNV NM_001145830:c.C3394G:p.R1132G exonic Plcb1 nonsynonymous SNV uc008mnx.2:c.C3394G:p.R1132G exonic ENSMUSG00000051177 nonsynonymous SNV ENSMUST00000163224:c.C2626G:p.R876G 2qF3 NA NA chr2 135213591 ATCxGCC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.980739 0.987943 0.992708 74 0 0 48.462358 0.333333 0.02 1.169381 40 20 974 555 60 60 0 0 CC 3.006314 10 0 266 0 KEEP + Plcb1 NO AFB1_3 chr2 157048540 157048540 G T exonic Mroh8 nonsynonymous SNV NM_001039557:c.C2351A:p.A784E exonic 4922505G16Rik nonsynonymous SNV uc008nou.2:c.C2351A:p.A784E exonic ENSMUSG00000074627 nonsynonymous SNV ENSMUST00000099137:c.C2084A:p.A695E 2qH1 NA NA chr2 157048540 AGTxCAA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999999 53 0 0 12.622649 0.357143 0.02 -0.122774 9 5 256 142 60 60 0 0 GG 10.5155 35 0 966 0 KEEP - Mroh8 YES AFB1_3 chr2 162792367 162792367 A G exonic L3mbtl1 nonsynonymous SNV NM_001081338:c.A1748G:p.K583R exonic L3mbtl nonsynonymous SNV uc008nsd.1:c.A1748G:p.K583R exonic ENSMUSG00000035576 nonsynonymous SNV ENSMUST00000109436:c.A1625G:p.K542R 2qH2 NA NA chr2 162792367 CCAxGAC A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 82 2 0 8.395914 0.173913 0.02 -0.201699 19 4 541 111 60 60 0 0 AA 12.331634 41 0 1140 0 KEEP + L3mbtl1 NO AFB1_3 chr2 168580357 168580357 C A exonic Sall4 nonsynonymous SNV NM_175303:c.G2062T:p.G688W exonic Sall4 nonsynonymous SNV uc008obf.1:c.G2062T:p.G688W exonic ENSMUSG00000027547 nonsynonymous SNV ENSMUST00000029061:c.G2062T:p.G688W 2qH3 NA NA chr2 168580357 CCCxGCT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 115 0 0 23.837057 0.277778 0.02 -0.315589 26 10 673 283 60 60 0 0 CC 22.22697 74 0 1943 0 KEEP - Sall4 YES AFB1_3 chr2 180338819 180338819 T G intronic Col9a3 NA NA intronic Col9a3 NA NA intronic ENSMUSG00000027570 NA NA 2qH4 NA NA chr2 180338819 AGCxTCC T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 81 0 0 18.066879 0.4 0.02 -0.175345 12 8 342 201 60 60 0 0 TT 15.640425 52 0 1448 0 KEEP + Col9a3 NO AFB1_3 chr2 25434453 25434453 C G exonic Gm996 nonsynonymous SNV NM_001005424:c.G965C:p.R322P exonic Gm996 nonsynonymous SNV uc008isq.1:c.G965C:p.R322P exonic ENSMUSG00000029419 nonsynonymous SNV ENSMUST00000114217:c.G965C:p.R322P 2qA3 NA NA chr2 25434453 CCAxGCC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 197 0 0 10.527267 0.135135 0.02 -0.324319 32 5 816 145 60 60 0 0 CC 41.129069 137 0 3304 0 KEEP - Gm996 NO AFB1_3 chr2 26951056 26951056 A C exonic Adamtsl2 nonsynonymous SNV NM_029981:c.A1431C:p.E477D exonic Adamtsl2 nonsynonymous SNV uc008ixa.1:c.A1431C:p.E477D exonic ENSMUSG00000036040 nonsynonymous SNV ENSMUST00000091233:c.A1431C:p.E477D 2qA3 NA NA chr2 26951056 AGAxGAG A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 80 2 0 14.081204 0.241379 0.02 -0.254283 22 7 629 177 60 60 0 0 AA 12.633588 42 0 1179 0 KEEP + Adamtsl2 NO AFB1_3 chr2 31268850 31268850 A T intergenic "Ncs1(dist=117859),Ass1(dist=56940)" NA NA intergenic "Ncs1(dist=117859),Hmcn2(dist=24732)" NA NA exonic ENSMUSG00000055632 nonsynonymous SNV ENSMUST00000113532:c.A8982T:p.E2994D 2qB NA NA chr2 31268850 TGAxGTT A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 144 2 0 36.113061 0.3 0.02 -0.437497 35 15 979 422 60 60 0 0 AA 23.737348 79 0 2158 0 KEEP NA Ncs1 NO AFB1_3 chr2 31283757 31283757 T C intergenic "Ncs1(dist=132766),Ass1(dist=42033)" NA NA intergenic "Ncs1(dist=132766),Hmcn2(dist=9825)" NA NA exonic ENSMUSG00000055632 nonsynonymous SNV ENSMUST00000113532:c.T11593C:p.S3865P 2qB NA NA chr2 31283757 GACxCAG T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 0.999999 59 1 0 17.836328 0.466667 0.02 -0.131531 8 7 229 190 60 60 0 0 TT 10.527116 35 0 973 0 KEEP NA Ncs1 NO AFB1_3 chr2 31655897 31655897 G T exonic Abl1 nonsynonymous SNV NM_001112703:c.G1907T:p.R636L exonic Abl1 nonsynonymous SNV uc008jeb.2:c.G1907T:p.R636L exonic ENSMUSG00000026842 nonsynonymous SNV ENSMUST00000028190:c.G1850T:p.R617L 2qB NA NA chr2 31655897 AGCxCAG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.519232 0.522161 0.994391 39 0 0 16.85048 0.291667 0.02 -0.21038 17 7 435 198 60 60 0 0 GG 3.9066 13 0 332 0 KEEP + Abl1 YES AFB1_3 chr2 31872835 31872835 A C exonic Nup214 synonymous SNV NM_172268:c.A3153C:p.S1051S exonic Nup214 synonymous SNV uc008jeh.1:c.A3153C:p.S1051S exonic ENSMUSG00000001855 synonymous SNV ENSMUST00000168996:c.A1485C:p.S495S 2qB NA NA chr2 31872835 TTCxCCT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043785 0.043787 0.999957 44 0 0 6.601045 0.666667 0.02 -0.059687 2 4 35 65 60 60 0 0 AA 6.023961 25 1 602 13 KEEP + Nup214 NO AFB1_3 chr2 32548015 32548015 A C exonic Fpgs nonsynonymous SNV NM_010236:c.T277G:p.L93V exonic Fpgs nonsynonymous SNV uc008jgm.2:c.T277G:p.L93V exonic ENSMUSG00000009566 nonsynonymous SNV ENSMUST00000028148:c.T277G:p.L93V 2qB NA NA chr2 32548015 TCAxGTC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 110 0 0 27.89316 0.304348 0.02 -0.403085 32 14 922 335 60 60 0 0 AA 14.703795 49 0 1346 0 KEEP - Fpgs NO AFB1_3 chr2 32941539 32941539 G A intronic Garnl3 NA NA UTR5 Garnl3 NA NA UTR5 ENSMUSG00000038860 NA NA 2qB NA NA chr2 32941539 AAGxAAG G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.99986 75 0 0 19.430454 0.258065 0.02 -0.289225 23 8 673 233 60 29 0 0 GG 5.714703 19 0 534 0 KEEP - Garnl3 NO AFB1_3 chr2 3415401 3415401 T G exonic Hspa14 nonsynonymous SNV NM_015765:c.A627C:p.E209D exonic Hspa14 nonsynonymous SNV uc008ief.1:c.A627C:p.E209D exonic ENSMUSG00000051396 nonsynonymous SNV ENSMUST00000027961:c.A627C:p.E209D 2qA1 NA NA chr2 3415401 AACxTCC T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 104 0 0 7.426747 0.142857 0.02 -0.245542 24 4 689 105 60 60 0 0 TT 19.851079 66 0 1828 0 KEEP - Hspa14 NO AFB1_3 chr2 37876916 37876916 T G exonic Dennd1a nonsynonymous SNV NM_146122:c.A578C:p.Y193S exonic Dennd1a nonsynonymous SNV uc008jni.2:c.A362C:p.Y121S exonic ENSMUSG00000035392 nonsynonymous SNV ENSMUST00000171230:c.A320C:p.Y107S 2qB NA NA chr2 37876916 TCAxACA T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 60 0 0 7.273269 0.214286 0.02 -0.122772 11 3 306 90 60 60 0 0 TT 11.727326 39 0 1039 0 KEEP - Dennd1a NO AFB1_3 chr2 40534545 40534545 T C exonic Lrp1b nonsynonymous SNV NM_053011:c.A12083G:p.E4028G exonic Lrp1b nonsynonymous SNV uc008jom.1:c.A755G:p.E252G exonic ENSMUSG00000049252 nonsynonymous SNV ENSMUST00000052550:c.A12176G:p.E4059G 2qB NA NA chr2 40534545 GGCxCCC T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.908941 0.909069 0.999859 72 0 0 7.402036 0.166667 0.02 -0.375102 35 7 869 122 60 60 0 0 TT 5.411741 18 0 485 0 KEEP - Lrp1b NO AFB1_3 chr2 51945092 51945092 G T exonic Rif1 nonsynonymous SNV NM_175238:c.G1265T:p.G422V exonic Rif1 nonsynonymous SNV uc008jqq.1:c.G1265T:p.G422V exonic ENSMUSG00000036202 nonsynonymous SNV ENSMUST00000069794:c.G1265T:p.G422V 2qC1.1 NA NA chr2 51945092 CAGxTGG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 104 0 0 39.391911 0.326531 0.02 -0.429678 33 16 915 452 60 60 0 0 GG 13.233895 44 0 1218 0 KEEP + Rif1 YES AFB1_3 chr2 66060755 66060755 T C exonic Ttc21b nonsynonymous SNV NM_001047604:c.A2414G:p.E805G exonic Ttc21b nonsynonymous SNV uc008jwx.1:c.A1223G:p.E408G exonic ENSMUSG00000034848 nonsynonymous SNV ENSMUST00000102718:c.A2414G:p.E805G 2qC1.3 NA NA chr2 66060755 TTCxCGT T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999997 84 1 0 40.313891 0.355556 0.02 -0.394633 29 16 828 454 60 60 0 0 TT 9.624341 32 0 888 0 KEEP - Ttc21b NO AFB1_3 chr2 66140498 66140498 C A exonic Scn1a synonymous SNV NM_018733:c.G3597T:p.T1199T exonic Scn1a synonymous SNV uc008jwz.1:c.G3597T:p.T1199T exonic ENSMUSG00000064329 synonymous SNV ENSMUST00000077489:c.G3597T:p.T1199T 2qC1.3 NA NA chr2 66140498 GCAxGTC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229145 0.229173 0.999879 41 0 0 9.23237 0.266667 0.02 -0.13148 11 4 280 111 60 60 0 0 CC 6.612221 22 0 560 0 KEEP - Scn1a YES AFB1_3 chr2 66140499 66140499 G C exonic Scn1a nonsynonymous SNV NM_018733:c.C3596G:p.T1199R exonic Scn1a nonsynonymous SNV uc008jwz.1:c.C3596G:p.T1199R exonic ENSMUSG00000064329 nonsynonymous SNV ENSMUST00000077489:c.C3596G:p.T1199R 2qC1.3 NA NA chr2 66140499 CACxTCC G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229145 0.229173 0.999879 41 0 0 9.532303 0.266667 0.02 -0.131488 11 4 279 114 60 60 0 0 GG 6.575381 22 0 522 0 KEEP - Scn1a NO AFB1_3 chr2 66378372 66378372 A G exonic Scn9a synonymous SNV NM_018852:c.T1926C:p.N642N exonic Scn9a synonymous SNV uc008jxe.2:c.T1533C:p.N511N exonic ENSMUSG00000075316 synonymous SNV ENSMUST00000112354:c.T1920C:p.N640N 2qC1.3 NA NA chr2 66378372 TCCxTTG A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 138 0 0 15.232854 0.333333 0.02 -0.184129 14 7 401 177 60 60 0 0 AA 30.330575 101 0 2676 0 KEEP - Scn9a NO AFB1_3 chr2 69579703 69579703 C T exonic Ppig synonymous SNV NM_001081086:c.C708T:p.S236S exonic Ppig synonymous SNV uc008jyl.1:c.C708T:p.S236S exonic ENSMUSG00000042133 synonymous SNV ENSMUST00000040915:c.C708T:p.S236S 2qC2 NA NA chr2 69579703 TTCxCGA C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 469 22 0 16.366987 0.029268 0.02 9.851518 398 12 11338 341 60 37 0 0 CC 18.345505 61 0 1698 0 KEEP + Ppig NO AFB1_3 chr2 70559793 70559793 G C intronic Tlk1 NA NA ncRNA_intronic mKIAA0137 NA NA intronic ENSMUSG00000041997 NA NA 2qC2 NA NA chr2 70559793 ACAxGAA G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 64 0 0 9.5711 0.185185 0.02 -0.236752 22 5 625 128 60 60 0 0 GG 9.325398 31 0 881 0 KEEP - Tlk1 NO AFB1_3 chr2 71663615 71663615 T G exonic Itga6 synonymous SNV NM_001277970:c.T825G:p.T275T exonic Itga6 synonymous SNV uc008kbc.1:c.T825G:p.T275T exonic ENSMUSG00000027111 synonymous SNV ENSMUST00000028522:c.T825G:p.T275T 2qC2 NA NA chr2 71663615 CACxTTT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 50 0 0 23.14313 0.357143 0.02 -0.245518 18 10 515 263 60 60 0 0 TT 6.016013 20 0 562 0 KEEP + Itga6 NO AFB1_3 chr2 75914049 75914049 G T exonic Pde11a nonsynonymous SNV NM_001081033:c.C1880A:p.A627D exonic Pde11a nonsynonymous SNV uc012bxo.1:c.C713A:p.A238D exonic ENSMUSG00000075270 nonsynonymous SNV ENSMUST00000099992:c.C1880A:p.A627D 2qC3 NA NA chr2 75914049 AGAxCGG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 69 0 0 19.762736 0.347826 0.02 -0.201704 15 8 434 224 60 60 0 0 GG 12.332691 41 0 1153 0 KEEP - Pde11a YES AFB1_3 chr2 76753038 76753038 A G intronic Ttn NA NA intronic Ttn NA NA exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000099980:c.T15723C:p.T5241T 2qC3 NA NA chr2 76753038 AGGxGTG A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 78 0 0 32.875786 0.361111 0.02 -0.315709 23 13 659 369 60 60 0 0 AA 10.82883 36 0 1010 0 KEEP - Ttn NO AFB1_3 chr2 84610402 84610402 C G exonic Serping1 nonsynonymous SNV NM_009776:c.G752C:p.S251T exonic Serping1 nonsynonymous SNV uc008kjd.2:c.G752C:p.S251T exonic ENSMUSG00000023224 nonsynonymous SNV ENSMUST00000023994:c.G752C:p.S251T 2qD NA NA chr2 84610402 CTGxTTC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 70 0 0 37.936532 0.416667 0.02 -0.315645 21 15 592 414 60 60 0 0 CC 9.024152 30 0 846 0 KEEP - Serping1 NO AFB1_3 chr3 106373679 106373679 G A exonic Dram2 nonsynonymous SNV NM_026013:c.G408A:p.M136I exonic Dram2 nonsynonymous SNV uc008qwg.1:c.G408A:p.M136I exonic ENSMUSG00000027900 nonsynonymous SNV ENSMUST00000121034:c.G408A:p.M136I 3qF2.3 NA NA chr3 106373679 CATxTTT G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 53 0 0 9.776775 0.363636 0.02 -0.096456 7 4 195 110 60 60 0 0 GG 11.429614 38 0 1063 0 KEEP + Dram2 NO AFB1_3 chr3 121695792 121695792 A G exonic Arhgap29 nonsynonymous SNV NM_172525:c.A1087G:p.N363D exonic Arhgap29 nonsynonymous SNV uc008rej.1:c.A634G:p.N212D exonic ENSMUSG00000039831 nonsynonymous SNV ENSMUST00000037958:c.A1087G:p.N363D 3qG1 NA NA chr3 121695792 AAAxATC A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.989422 0.989542 0.999879 88 0 0 51.482798 0.327869 0.02 1.357209 41 20 1174 587 60 60 0 0 AA 6.617233 22 0 611 0 KEEP + Arhgap29 NO AFB1_3 chr3 134963713 134963713 G T intronic Bdh2 NA NA intronic Bdh2 NA NA intronic ENSMUSG00000028167 NA NA 3qG3 NA NA chr3 134963713 GCAxTTT G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 61 0 0 6.59309 0.176471 0.02 -0.149029 14 3 378 86 60 60 0 0 GG 11.72806 39 0 1056 0 KEEP + Bdh2 YES AFB1_3 chr3 14547371 14547371 T G exonic Lrrcc1 nonsynonymous SNV NM_001163579:c.T1231G:p.F411V exonic Lrrcc1 nonsynonymous SNV uc008oqh.2:c.T1231G:p.F411V exonic ENSMUSG00000027550 nonsynonymous SNV ENSMUST00000163660:c.T865G:p.F289V 3qA1 NA NA chr3 14547371 AACxTCT T G AFB1_3_GATCAG 7-E185-R-P_1 0 DBSNP COVERED 0.987829 0.999973 0.987855 129 0 0 34.76504 0.166667 0.02 2.398092 85 17 2423 466 60 60 0 0 TT 6.918344 23 0 644 0 KEEP + Lrrcc1 NO AFB1_3 chr3 153919511 153919511 C A exonic Slc44a5 nonsynonymous SNV NM_001081263:c.C1116A:p.F372L exonic Slc44a5 nonsynonymous SNV uc008ruk.1:c.C1116A:p.F372L exonic ENSMUSG00000028360 nonsynonymous SNV ENSMUST00000089948:c.C1116A:p.F372L 3qH4 NA NA chr3 153919511 CTTxATC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 160 7 0 16.04879 0.5 0.02 -0.105234 6 6 172 168 60 60 0 0 CC 33.078914 110 0 3155 0 KEEP + Slc44a5 YES AFB1_3 chr3 30794883 30794883 T C exonic Gpr160 nonsynonymous SNV NM_001134386:c.T181C:p.S61P exonic Gpr160 nonsynonymous SNV uc008ovj.2:c.T181C:p.S61P exonic ENSMUSG00000037661 nonsynonymous SNV ENSMUST00000108259:c.T181C:p.S61P 3qA3 NA NA chr3 30794883 TTCxCAC T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 87 0 0 13.068553 0.157895 0.02 -0.33324 32 6 903 174 60 60 0 0 TT 13.810281 46 0 1265 0 KEEP + Gpr160 NO AFB1_3 chr3 32775816 32775816 A G exonic Usp13 synonymous SNV NM_001013024:c.A816G:p.Q272Q exonic Usp13 synonymous SNV uc008owr.1:c.A816G:p.Q272Q exonic ENSMUSG00000056900 synonymous SNV ENSMUST00000072312:c.A816G:p.Q272Q 3qA3 NA NA chr3 32775816 TCAxGAA A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 60 0 0 6.979326 0.1875 0.02 -0.140319 13 3 373 89 60 60 0 0 AA 11.129568 37 0 1037 0 KEEP + Usp13 NO AFB1_3 chr3 33729576 33729576 T C intronic Ccdc39 NA NA intronic Ccdc39 NA NA intronic ENSMUSG00000027676 NA NA 3qA3 NA NA chr3 33729576 TCTxACC T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 150 0 0 65.665659 0.254717 0.02 2.657529 79 27 2194 789 60 60 0 0 TT 11.730765 39 0 1085 0 KEEP - Ccdc39 NO AFB1_3 chr3 68841549 68841549 G T exonic Trim59 nonsynonymous SNV NM_025863:c.C379A:p.H127N exonic Trim59 nonsynonymous SNV uc008pmd.2:c.C379A:p.H127N exonic ENSMUSG00000034317 nonsynonymous SNV ENSMUST00000107802:c.C379A:p.H127N 3qE1 "Score=0.953112;Name=No.59281,chr15:91387097" NA chr3 68841549 CATxATG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 116 0 9 7.082174 0.230769 0.02 -0.114014 10 3 292 87 36 36 0 0 GG 28.278364 94 0 2705 0 KEEP - Trim59 YES AFB1_3 chr3 87618245 87618245 C A intronic Insrr NA NA intronic Insrr NA NA intronic "ENSMUSG00000005640,ENSMUSG00000028073" NA NA 3qF1 NA NA chr3 87618245 GGCxTGG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 70 0 0 10.854813 0.2 0.02 -0.219238 20 5 575 139 60 60 0 0 CC 12.333113 41 0 1157 0 KEEP + Insrr YES AFB1_3 chr3 87618252 87618252 G A intronic Insrr NA NA intronic Insrr NA NA intronic "ENSMUSG00000005640,ENSMUSG00000028073" NA NA 3qF1 NA NA chr3 87618252 TGGxAGC G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 69 0 0 8.363714 0.153846 0.02 -0.228015 22 4 638 113 60 60 0 0 GG 11.731745 39 0 1105 0 KEEP + Insrr NO AFB1_3 chr3 87710554 87710554 C A exonic Hdgf stopgain SNV NM_008231:c.C5A:p.S2X exonic Hdgf stopgain SNV uc008ptc.2:c.C5A:p.S2X exonic ENSMUSG00000004897 stopgain SNV ENSMUST00000005017:c.C5A:p.S2X 3qF1 NA NA chr3 87710554 TGTxGCG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999998 52 0 0 7.44394 0.333333 0.02 -0.078905 6 3 158 85 60 60 0 0 CC 9.92252 33 0 887 0 KEEP + Hdgf YES AFB1_3 chr3 87742678 87742678 C G exonic Isg20l2 synonymous SNV NM_177663:c.C975G:p.L325L exonic Isg20l2 synonymous SNV uc008ptj.1:c.C975G:p.L325L exonic ENSMUSG00000048039 synonymous SNV ENSMUST00000055984:c.C975G:p.L325L 3qF1 "Score=0.941803;Name=No.83098,chr6:128925684" NA chr3 87742678 GCTxCTG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 112 2 0 14.630403 0.26087 0.02 -0.201718 17 6 497 175 60 60 0 0 CC 21.357135 71 0 2003 0 KEEP + Isg20l2 NO AFB1_3 chr3 88789243 88789243 C G exonic Ash1l synonymous SNV NM_138679:c.C4506G:p.G1502G exonic Ash1l synonymous SNV uc008pxj.1:c.C4506G:p.G1502G exonic ENSMUSG00000028053 synonymous SNV ENSMUST00000090933:c.C4506G:p.G1502G 3qF1 NA NA chr3 88789243 TGGxTCT C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 83 0 0 17.002074 0.304348 0.02 -0.201701 16 7 456 198 60 60 0 0 CC 15.319845 51 0 1412 0 KEEP + Ash1l NO AFB1_3 chr3 93250642 93250642 C G exonic Tchh nonsynonymous SNV NM_001163098:c.C3466G:p.Q1156E exonic Tchh nonsynonymous SNV uc012cti.1:c.C3466G:p.Q1156E exonic ENSMUSG00000052415 nonsynonymous SNV ENSMUST00000064257:c.C3466G:p.Q1156E 3qF2.1 NA NA chr3 93250642 GAGxAAG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.992091 0.992094 0.999997 104 0 6 21.8386 0.166667 0.02 1.24126 50 10 1380 288 60 60 0 0 CC 8.42197 28 0 782 0 KEEP + Tchh NO AFB1_3 chr3 95391375 95391375 A C UTR3 Hormad1 NA NA exonic Hormad1 nonsynonymous SNV uc008qkd.1:c.A1174C:p.T392P exonic ENSMUSG00000028109 nonsynonymous SNV ENSMUST00000029754:c.A1174C:p.T392P 3qF2.1 NA NA chr3 95391375 CATxCCT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 282 3 106 8.578367 0.05 0.02 0.916707 95 5 2579 148 36 23 0 0 AA 15.268978 61 1 1643 29 KEEP + Hormad1 NO AFB1_3 chr3 96494192 96494192 C T UTR3 Ankrd35 NA NA UTR3 Ankrd35 NA NA UTR3 ENSMUSG00000038354 NA NA 3qF2.1 NA NA chr3 96494192 GTGxCCT C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.797437 0.800245 0.99649 54 0 0 9.7581 0.142857 0.02 -0.306785 30 5 845 136 60 29 0 0 CC 4.510424 15 0 408 0 KEEP + Ankrd35 NO AFB1_3 chr4 102699241 102699241 T G exonic Insl5 nonsynonymous SNV NM_011831:c.A57C:p.E19D exonic Insl5 nonsynonymous SNV uc008txa.1:c.A57C:p.E19D exonic ENSMUSG00000066090 nonsynonymous SNV ENSMUST00000084382:c.A57C:p.E19D 4qC6 NA NA chr4 102699241 TACxTCC T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 0.999999 55 0 0 14.262409 0.461538 0.02 -0.113975 7 6 198 153 60 60 0 0 TT 10.516934 35 0 957 0 KEEP - Insl5 NO AFB1_3 chr4 111239201 111239201 T C intronic Agbl4 NA NA intronic Agbl4 NA NA intronic ENSMUSG00000061298 NA NA 4qD1 NA NA chr4 111239201 GACxCTC T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054135 0.054137 0.999957 39 2 0 10.498876 0.5 0.02 -0.070155 4 4 116 110 60 60 0 0 TT 7.820931 26 0 732 0 KEEP + Agbl4 NO AFB1_3 chr4 119094598 119094598 C A exonic Ppcs stopgain SNV NM_026494:c.G361T:p.E121X exonic Ppcs stopgain SNV uc008umm.1:c.G361T:p.E121X exonic ENSMUSG00000028636 stopgain SNV ENSMUST00000030385:c.G361T:p.E121X 4qD2.1 "Score=0.96713;Name=No.66946,chr17:8453520" NA chr4 119094598 CTTxGGC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 67 0 0 12.785978 0.176471 0.02 -0.298104 28 6 774 168 60 29 0 0 CC 9.009363 30 0 755 0 KEEP - Ppcs YES AFB1_3 chr4 125720170 125720170 G A exonic Csf3r nonsynonymous SNV NM_001252651:c.G1657A:p.D553N exonic Csf3r nonsynonymous SNV uc012dla.1:c.G1657A:p.D553N exonic ENSMUSG00000028859 nonsynonymous SNV ENSMUST00000106163:c.G1657A:p.D553N 4qD2.2 NA NA chr4 125720170 TCAxATG G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 70 1 0 6.882172 0.230769 0.02 -0.114014 10 3 295 85 60 60 0 0 GG 14.138745 47 0 1345 0 KEEP + Csf3r NO AFB1_3 chr4 125989201 125989201 C G exonic Col8a2 nonsynonymous SNV NM_199473:c.C1759G:p.P587A exonic Col8a2 nonsynonymous SNV uc008utd.1:c.C1759G:p.P587A exonic ENSMUSG00000056174 nonsynonymous SNV ENSMUST00000070132:c.C1759G:p.P587A 4qD2.2 NA NA chr4 125989201 ATGxCGG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 79 0 0 18.823704 0.5 0.02 -0.149084 7 7 200 197 60 60 0 0 CC 15.317888 51 0 1379 0 KEEP + Col8a2 NO AFB1_3 chr4 129989652 129989652 A C exonic Fabp3 nonsynonymous SNV NM_010174:c.A191C:p.N64T exonic Fabp3 nonsynonymous SNV uc008uzd.1:c.A191C:p.N64T exonic ENSMUSG00000028773 nonsynonymous SNV ENSMUST00000070532:c.A191C:p.N64T 4qD2.2 NA NA chr4 129989652 TCAxCTT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.99986 42 0 1 6.473053 0.2 0.02 -0.131531 12 3 332 83 36 36 0 0 AA 5.712844 19 0 512 0 KEEP + Fabp3 NO AFB1_3 chr4 133611800 133611800 T G intergenic "Lin28a(dist=37069),Aim1l(dist=12567)" NA NA intergenic "Lin28a(dist=37069),Aim1l(dist=12567)" NA NA exonic ENSMUSG00000049410 nonsynonymous SNV ENSMUST00000105884:c.T659G:p.L220R 4qD3 NA NA chr4 133611800 TGCxTAT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 139 0 0 9.766746 0.227273 0.02 -0.192908 17 5 489 125 60 60 0 0 TT 30.378622 101 0 2800 0 KEEP NA Lin28a NO AFB1_3 chr4 133927622 133927622 T A exonic Extl1 nonsynonymous SNV NM_019578:c.A12T:p.R4S exonic Extl1 nonsynonymous SNV uc012dmu.1:c.A12T:p.R4S exonic ENSMUSG00000028838 nonsynonymous SNV ENSMUST00000030643:c.A12T:p.R4S 4qD3 NA NA chr4 133927622 TCTxCTC T A AFB1_3_GATCAG 7-E185-R-P_1 0 DBSNP COVERED 0.691096 0.693668 0.996292 62 0 0 27.18512 0.366667 0.02 -0.263084 19 11 543 305 60 60 0 0 TT 8.120743 27 0 744 0 KEEP - Extl1 NO AFB1_3 chr4 138617398 138617398 G T exonic Htr6 nonsynonymous SNV NM_021358:c.C1260A:p.F420L exonic Htr6 nonsynonymous SNV uc008vlr.1:c.C1260A:p.F420L exonic ENSMUSG00000028747 nonsynonymous SNV ENSMUST00000068036:c.C1260A:p.F420L 4qD3 NA NA chr4 138617398 GAAxAAG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 144 1 0 13.480736 0.24 0.02 -0.219251 19 6 558 166 60 60 0 0 GG 28.569293 95 0 2703 0 KEEP - Htr6 YES AFB1_3 chr4 139713379 139713379 G T exonic Igsf21 stopgain SNV NM_198610:c.C180A:p.Y60X exonic Igsf21 stopgain SNV uc008vmu.2:c.C180A:p.Y60X exonic ENSMUSG00000040972 stopgain SNV ENSMUST00000039331:c.C180A:p.Y60X 4qD3 NA NA chr4 139713379 CCGxTAC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 127 0 0 11.266371 0.227273 0.02 -0.192925 17 5 480 140 60 60 0 0 GG 25.866805 86 0 2383 0 KEEP - Igsf21 YES AFB1_3 chr4 141240076 141240076 A G exonic Rsc1a1 nonsynonymous SNV NM_023544:c.T1439C:p.L480P exonic Rsc1a1 nonsynonymous SNV uc012dod.1:c.T1439C:p.L480P exonic ENSMUSG00000040715 nonsynonymous SNV ENSMUST00000105782:c.T1439C:p.L480P 4qE1 NA NA chr4 141240076 GCAxGTT A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 60 0 0 27.886578 0.37931 0.02 -0.254304 18 11 518 310 60 60 0 0 AA 8.702735 29 0 788 0 KEEP - Rsc1a1 NO AFB1_3 chr4 143207457 143207457 A C exonic Gm13083 nonsynonymous SNV NM_001126324:c.A1423C:p.S475R exonic Gm13083 nonsynonymous SNV uc012doo.1:c.A1423C:p.S475R exonic ENSMUSG00000066688 nonsynonymous SNV ENSMUST00000105773:c.A1423C:p.S475R 4qE1 "Score=0.931403;Name=No.86435,chr4:143472458" NA chr4 143207457 GTGxGTA A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 132 0 4 29.558012 0.302326 0.02 -0.377043 30 13 844 348 60 60 0 0 AA 22.839741 76 0 2098 0 KEEP + Gm13083 NO AFB1_3 chr4 147415854 147415854 G A exonic Mthfr nonsynonymous SNV NM_001161798:c.G272A:p.R91H exonic Mthfr nonsynonymous SNV uc008vtw.1:c.G149A:p.R50H exonic ENSMUSG00000029009 nonsynonymous SNV ENSMUST00000069604:c.G272A:p.R91H 4qE2 "Score=0.980769;Name=No.87274,chr5:78902899" NA chr4 147415854 GGCxCAG G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 82 3 2 9.271834 0.285714 0.02 -0.122741 10 4 268 110 60 36 0 0 GG 14.331708 57 1 1392 26 KEEP + Mthfr NO AFB1_3 chr4 147904740 147904740 G T intronic Mtor NA NA intronic Mtor NA NA intronic ENSMUSG00000028991 NA NA 4qE2 NA NA chr4 147904740 GGTxGTA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999999 67 0 0 17.999701 0.275862 0.02 -0.254215 21 8 583 216 60 60 0 0 GG 10.511216 35 0 955 0 KEEP + Mtor YES AFB1_3 chr4 153640293 153640293 C T exonic Megf6 stopgain SNV NM_001162977:c.C3151T:p.R1051X exonic Megf6 stopgain SNV uc008wbq.2:c.C73T:p.R25X exonic ENSMUSG00000057751 stopgain SNV ENSMUST00000030897:c.C3151T:p.R1051X 4qE2 NA NA chr4 153640293 TGCxGAA C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229145 0.229173 0.999879 40 0 0 22.216843 0.533333 0.02 -0.1315 7 8 175 229 60 60 0 0 CC 6.614969 22 0 594 0 KEEP + Megf6 NO AFB1_3 chr4 154365103 154365103 G C intronic Plch2 NA NA intronic Plch2 NA NA intronic ENSMUSG00000029055 NA NA 4qE2 NA NA chr4 154365103 CCTxAAC G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.320408 0.322807 0.99257 26 0 0 18.615629 0.388889 0.02 -0.157861 11 7 316 205 60 60 0 0 GG 2.406723 8 0 231 0 KEEP - Plch2 NO AFB1_3 chr4 154452646 154452646 C A exonic Rer1 synonymous SNV NM_026395:c.G243T:p.A81A exonic Rer1 synonymous SNV uc008wct.1:c.G243T:p.A81A exonic ENSMUSG00000029048 synonymous SNV ENSMUST00000030914:c.G243T:p.A81A 4qE2 NA NA chr4 154452646 GAAxGCA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 74 1 0 19.325357 0.5 0.02 -0.122755 7 7 185 202 60 60 0 0 CC 13.221628 44 0 1099 0 KEEP - Rer1 YES AFB1_3 chr4 41071357 41071357 A G UTR5 Nol6 NA NA UTR5 Nol6 NA NA UTR5 ENSMUSG00000028430 NA NA 4qA5 NA NA chr4 41071357 CCCxCCC A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 46 0 0 12.862434 0.352941 0.02 -0.148926 11 6 294 148 60 60 0 0 AA 8.051954 27 0 672 0 KEEP - Nol6 NO AFB1_3 chr4 43032198 43032198 T G exonic Pigo nonsynonymous SNV NM_020035:c.A2991C:p.E997D exonic Pigo nonsynonymous SNV uc008sov.1:c.A2991C:p.E997D exonic ENSMUSG00000028454 nonsynonymous SNV ENSMUST00000164949:c.A1128C:p.E376D 4qA5 NA NA chr4 43032198 CTCxTCC T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139814 0.139832 0.999869 37 0 0 6.70133 0.25 0.02 -0.105234 9 3 258 82 60 60 0 0 TT 6.306042 21 0 563 0 KEEP - Pigo NO AFB1_3 chr4 43230076 43230076 A G intronic Unc13b NA NA intronic Unc13b NA NA intronic ENSMUSG00000028456 NA NA 4qA5 NA NA chr4 43230076 ACAxGTC A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 58 0 0 21.483809 0.321429 0.02 -0.244346 19 9 507 248 60 60 0 0 AA 8.722952 29 0 810 0 KEEP + Unc13b NO AFB1_3 chr4 43243060 43243060 A T intronic Unc13b NA NA intronic Unc13b NA NA intronic ENSMUSG00000028456 NA NA 4qA5 NA NA chr4 43243060 CCCxCCT A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999892 1 0.999892 174 0 0 16.166059 0.177778 0.02 -0.120429 111 24 2506 318 60 60 0 0 AA 6.912241 23 0 605 0 KEEP + Unc13b NO AFB1_3 chr4 43243070 43243070 A T intronic Unc13b NA NA intronic Unc13b NA NA intronic ENSMUSG00000028456 NA NA 4qA5 NA NA chr4 43243070 TCTxCTT A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999891 0.999999 0.999892 157 0 0 6.966422 0.125 0.02 0.009045 105 15 2446 189 60 60 0 0 AA 6.913151 23 0 604 0 KEEP + Unc13b NO AFB1_3 chr4 43466526 43466526 C A exonic Cd72 nonsynonymous SNV NM_001110320:c.G249T:p.R83S exonic Cd72 nonsynonymous SNV uc008spr.2:c.G249T:p.R83S exonic ENSMUSG00000028459 nonsynonymous SNV ENSMUST00000030179:c.G249T:p.R83S 4qB1 NA NA chr4 43466526 CTGxCTG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 84 0 0 33.700858 0.464286 0.02 -0.254308 15 13 431 359 60 60 0 0 CC 13.83576 46 0 1274 0 KEEP - Cd72 YES AFB1_3 chr4 43673194 43673194 T A exonic Fam221b nonsynonymous SNV NM_175517:c.A1266T:p.E422D exonic 4930412F15Rik nonsynonymous SNV uc008sqt.1:c.A1266T:p.E422D exonic ENSMUSG00000043633 nonsynonymous SNV ENSMUST00000056474:c.A1266T:p.E422D 4qB1 NA NA chr4 43673194 TTCxTCG T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077287 0.077336 0.999366 30 0 0 10.42257 0.444444 0.02 -0.078926 5 4 143 112 60 60 0 0 TT 5.113567 17 0 476 0 KEEP - Fam221b NO AFB1_3 chr4 58151647 58151647 C G exonic Svep1 nonsynonymous SNV NM_022814:c.G1316C:p.C439S exonic Svep1 nonsynonymous SNV uc008syr.1:c.G1316C:p.C439S exonic ENSMUSG00000028369 nonsynonymous SNV ENSMUST00000042850:c.G1316C:p.C439S 4qB3 NA NA chr4 58151647 GGGxACG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.57966 0.58293 0.994391 43 0 0 29.554685 0.423077 0.02 -0.228017 15 11 427 320 60 60 0 0 CC 3.909385 13 0 361 0 KEEP - Svep1 NO AFB1_3 chr4 63394455 63394455 A C intronic Tnfsf15 NA NA intronic Tnfsf15 NA NA intronic ENSMUSG00000050395 NA NA 4qC1 NA NA chr4 63394455 AGCxCCT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.228106 0.229173 0.995343 36 0 0 15.587949 0.642857 0.02 -0.130066 5 9 133 154 60 60 0 0 AA 2.455566 12 2 300 10 KEEP - Tnfsf15 NO AFB1_3 chr4 71418902 71418902 T G intergenic "Megf9(dist=1222940),Tle1(dist=359274)" NA NA intergenic "Megf9(dist=1222940),AK083054(dist=352081)" NA NA exonic ENSMUSG00000066141 nonsynonymous SNV ENSMUST00000084489:c.A39C:p.K13N 4qC2 NA NA chr4 71418902 TAGxTTC T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 69 0 0 10.960339 0.192308 0.02 -0.227993 21 5 585 141 60 60 0 0 TT 12.330005 41 0 1128 0 KEEP NA Megf9 NO AFB1_3 chr4 82970003 82970003 C G exonic Ttc39b nonsynonymous SNV NM_027238:c.G14C:p.G5A exonic Ttc39b nonsynonymous SNV uc008tkq.1:c.G14C:p.G5A exonic ENSMUSG00000038172 nonsynonymous SNV ENSMUST00000030205:c.G14C:p.G5A 4qC3 NA NA chr4 82970003 CTGxCCA C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.518353 0.522161 0.992708 36 0 0 11.553607 0.208333 0.02 -0.210465 19 5 533 145 60 60 0 0 CC 3.006457 10 0 266 0 KEEP - Ttc39b NO AFB1_3 chr5 102355473 102355473 T C exonic Wdfy3 nonsynonymous SNV NM_172882:c.A2905G:p.S969G exonic Wdfy3 nonsynonymous SNV uc008yis.2:c.A2905G:p.S969G exonic ENSMUSG00000043940 nonsynonymous SNV ENSMUST00000174598:c.A2905G:p.S969G 5qE5 NA NA chr5 102355473 AACxCGG T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 142 0 0 15.836378 0.2 0.02 -0.306944 28 7 802 201 60 60 0 0 TT 24.362673 81 0 2246 0 KEEP - Wdfy3 NO AFB1_3 chr5 104602990 104602990 T G intronic Dspp NA NA intronic Dspp NA NA intronic ENSMUSG00000053268 NA NA 5qE5 NA NA chr5 104602990 ATCxTAT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.99519 0.998696 0.99649 92 1 0 48.559053 0.315789 0.02 1.028922 52 24 1492 577 60 60 0 0 TT 4.512027 15 0 421 0 KEEP + Dspp NO AFB1_3 chr5 108998778 108998778 A C UTR3 Gak NA NA UTR3 Gak NA NA UTR3 ENSMUSG00000062234 NA NA 5qF NA NA chr5 108998778 ATCxCCT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999998 60 0 0 6.851853 0.368421 0.02 -0.172018 12 7 310 91 60 60 0 0 AA 9.903027 33 0 862 0 KEEP - Gak NO AFB1_3 chr5 112820975 112820975 T C exonic Asphd2 nonsynonymous SNV NM_028386:c.A11G:p.E4G exonic Asphd2 nonsynonymous SNV uc008yth.1:c.A11G:p.E4G exonic ENSMUSG00000029348 nonsynonymous SNV ENSMUST00000031291:c.A11G:p.E4G 5qF NA NA chr5 112820975 CACxCCA T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054131 0.054137 0.999879 38 2 0 6.355869 0.5 0.02 -0.069691 4 4 114 69 60 60 0 0 TT 5.620371 21 1 488 5 KEEP - Asphd2 NO AFB1_3 chr5 113121160 113121160 C A exonic Myo18b stopgain SNV NM_028901:c.G7786T:p.E2596X exonic Myo18b stopgain SNV uc008ytr.2:c.G7786T:p.E2596X exonic ENSMUSG00000072720 stopgain SNV ENSMUST00000086617:c.G7786T:p.E2596X 5qF NA NA chr5 113121160 TTTxCAC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 90 4 0 18.199385 0.275862 0.02 -0.254321 21 8 611 218 60 60 0 0 CC 15.040603 50 0 1419 0 KEEP - Myo18b YES AFB1_3 chr5 115879981 115879981 C A intronic Msi1 NA NA intronic Msi1 NA NA intronic ENSMUSG00000054256 NA NA 5qF NA NA chr5 115879981 TCCxGCA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.99986 1 0.99986 180 1 0 77.311798 0.216561 0.02 3.700504 123 34 3262 967 60 60 0 0 CC 5.706839 19 0 458 0 KEEP + Msi1 YES AFB1_3 chr5 124265046 124265046 G C intronic Kntc1 NA NA intronic Kntc1 NA NA intronic ENSMUSG00000029414 NA NA 5qF NA NA chr5 124265046 GTAxATG G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 87 0 0 9.771246 0.285714 0.02 -0.122782 10 4 292 115 60 60 0 0 GG 19.252697 64 0 1838 0 KEEP + Kntc1 NO AFB1_3 chr5 124837505 124837505 G C exonic Sbno1 nonsynonymous SNV NM_001081203:c.C3023G:p.A1008G exonic Sbno1 nonsynonymous SNV uc008zpp.1:c.C3020G:p.A1007G exonic ENSMUSG00000038095 nonsynonymous SNV ENSMUST00000065263:c.C3023G:p.A1008G 5qF NA NA chr5 124837505 TTAxCAA G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 80 3 0 8.669609 0.190476 0.02 -0.184173 17 4 498 112 60 60 0 0 GG 15.92512 53 0 1460 0 KEEP - Sbno1 NO AFB1_3 chr5 138226857 138226857 C G exonic Mepce nonsynonymous SNV NM_144913:c.G434C:p.R145P exonic Mepce nonsynonymous SNV uc009ady.1:c.G434C:p.R145P exonic ENSMUSG00000029726 nonsynonymous SNV ENSMUST00000031740:c.G434C:p.R145P 5qG2 NA NA chr5 138226857 CGGxGCC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 136 0 0 20.520383 0.214286 0.02 -0.368288 33 9 916 257 60 60 0 0 CC 22.814569 76 0 1929 0 KEEP - Mepce NO AFB1_3 chr5 139870533 139870533 T G UTR3 Gpr146 NA NA UTR3 Gpr146 NA NA UTR3 ENSMUSG00000044197 NA NA 5qG2 NA NA chr5 139870533 AACxTTA T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 75 2 0 31.628273 0.35 0.02 -0.350727 26 14 745 362 60 60 0 0 TT 9.023894 30 0 840 0 KEEP + Gpr146 NO AFB1_3 chr5 144016499 144016499 G T exonic Zfp316 nonsynonymous SNV NM_017467:c.C1443A:p.H481Q exonic Zfp316 nonsynonymous SNV uc009ajw.2:c.C1443A:p.H481Q exonic ENSMUSG00000046658 nonsynonymous SNV ENSMUST00000085728:c.C417A:p.H139Q 5qG2 NA NA chr5 144016499 GCAxTGA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 56 0 0 13.886266 0.333333 0.02 -0.15784 12 6 342 160 60 60 0 0 GG 9.325224 31 0 879 0 KEEP - Zfp316 YES AFB1_3 chr5 144488828 144488828 C A exonic Usp42 nonsynonymous SNV NM_029749:c.G59T:p.G20V exonic Usp42 nonsynonymous SNV uc009akp.1:c.G59T:p.G20V exonic ENSMUSG00000051306 nonsynonymous SNV ENSMUST00000053287:c.G59T:p.G20V 5qG2 NA NA chr5 144488828 CTGxCAG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 66 0 0 20.599368 0.421053 0.02 -0.166619 11 8 312 224 60 60 0 0 CC 12.931567 43 0 1179 0 KEEP - Usp42 YES AFB1_3 chr5 145886482 145886482 G A exonic Arpc1b nonsynonymous SNV NM_023142:c.G536A:p.R179Q exonic Arpc1b nonsynonymous SNV uc009amb.2:c.G536A:p.R179Q exonic ENSMUSG00000029622 nonsynonymous SNV ENSMUST00000136074:c.G389A:p.R130Q 5qG2 NA NA chr5 145886482 AACxGCC G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 98 5 9 7.680568 0.095238 0.02 -0.37658 38 4 929 115 60 25 0 0 GG 12.268947 41 0 971 0 KEEP + Arpc1b NO AFB1_3 chr5 145886494 145886494 C T exonic Arpc1b nonsynonymous SNV NM_023142:c.C548T:p.T183I exonic Arpc1b nonsynonymous SNV uc009amb.2:c.C548T:p.T183I exonic ENSMUSG00000029622 nonsynonymous SNV ENSMUST00000136074:c.C401T:p.T134I 5qG2 NA NA chr5 145886494 CTAxACC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 94 6 7 7.36111 0.111111 0.02 -0.324444 32 4 888 109 36 25 0 0 CC 13.232468 44 0 1209 0 KEEP + Arpc1b NO AFB1_3 chr5 145886497 145886497 C T exonic Arpc1b nonsynonymous SNV NM_023142:c.C551T:p.P184L exonic Arpc1b nonsynonymous SNV uc009amb.2:c.C551T:p.P184L exonic ENSMUSG00000029622 nonsynonymous SNV ENSMUST00000136074:c.C404T:p.P135L 5qG2 NA NA chr5 145886497 CACxGTG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 93 6 5 7.71254 0.114286 0.02 -0.315599 31 4 825 112 36 25 0 0 CC 13.224274 44 0 1152 0 KEEP + Arpc1b NO AFB1_3 chr5 145886827 145886827 G C exonic Arpc1b nonsynonymous SNV NM_023142:c.G775C:p.V259L exonic Arpc1b nonsynonymous SNV uc009amb.2:c.G775C:p.V259L exonic ENSMUSG00000029622 nonsynonymous SNV ENSMUST00000136074:c.G628C:p.V210L 5qG2 NA NA chr5 145886827 CTAxTGG G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 89 2 1 10.741076 0.16129 0.02 -0.289369 26 5 716 143 60 23 0 0 GG 13.835101 46 0 1266 0 KEEP + Arpc1b NO AFB1_3 chr5 148450949 148450949 T G exonic Flt1 nonsynonymous SNV NM_010228:c.A1824C:p.Q608H exonic Flt1 nonsynonymous SNV uc009aoh.1:c.A1824C:p.Q608H exonic ENSMUSG00000029648 nonsynonymous SNV ENSMUST00000031653:c.A1824C:p.Q608H 5qG3 NA NA chr5 148450949 TTTxTGC T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 93 2 0 8.193089 0.148148 0.02 -0.236772 23 4 652 112 60 60 0 0 TT 15.641393 52 0 1456 0 KEEP - Flt1 NO AFB1_3 chr5 150005588 150005588 A G exonic Uspl1 nonsynonymous SNV NM_001013378:c.A404G:p.E135G exonic Uspl1 nonsynonymous SNV uc009apg.2:c.A362G:p.E121G exonic ENSMUSG00000041264 nonsynonymous SNV ENSMUST00000050472:c.A404G:p.E135G 5qG3 NA NA chr5 150005588 GTGxACC A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 144 1 0 15.123582 0.08 0.02 0.91656 92 8 2620 234 60 60 0 0 AA 11.128997 37 0 1028 0 KEEP + Uspl1 NO AFB1_3 chr5 30345996 30345996 A C exonic Il6 nonsynonymous SNV NM_031168:c.A544C:p.K182Q exonic Il6 nonsynonymous SNV uc008wuw.1:c.A493C:p.K165Q exonic ENSMUSG00000025746 nonsynonymous SNV ENSMUST00000026845:c.A544C:p.K182Q 5qB1 NA NA chr5 30345996 CAGxAGG A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999946 0.999989 0.999957 138 0 0 14.1832 0.074766 0.02 2.452112 99 8 2816 227 60 60 0 0 AA 7.820663 26 0 726 0 KEEP + Il6 NO AFB1_3 chr5 30470743 30470743 C A exonic Hadha nonsynonymous SNV NM_178878:c.G409T:p.V137F exonic Hadha nonsynonymous SNV uc008wvc.1:c.G409T:p.V137F exonic ENSMUSG00000025745 nonsynonymous SNV ENSMUST00000156859:c.G409T:p.V137F 5qB1 NA NA chr5 30470743 CAAxGGG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 117 1 0 17.662555 0.181818 0.02 -0.385699 36 8 927 229 60 60 0 0 CC 19.226307 64 0 1570 0 KEEP - Hadha YES AFB1_3 chr5 35429370 35429370 T C intronic Dok7 NA NA intronic Dok7 NA NA intronic ENSMUSG00000044716 NA NA 5qB2 NA NA chr5 35429370 ACCxCAG T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 87 0 0 7.560593 0.111111 0.02 -0.315696 32 4 905 111 60 60 0 0 TT 13.809749 46 0 1257 0 KEEP + Dok7 NO AFB1_3 chr5 35930834 35930834 G T exonic Acox3 stopgain SNV NM_030721:c.G16T:p.E6X exonic Acox3 stopgain SNV uc008xdz.1:c.G145T:p.E49X exonic ENSMUSG00000029098 stopgain SNV ENSMUST00000114238:c.G145T:p.E49X 5qB3 NA NA chr5 35930834 CCGxAAG G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 98 0 0 9.605116 0.128205 0.02 -0.342036 34 5 995 137 60 60 0 0 GG 15.328773 51 0 1403 0 KEEP + Acox3 YES AFB1_3 chr5 77524153 77524153 C A UTR5 Hopx NA NA UTR5 Hopx NA NA ncRNA_exonic ENSMUSG00000087541 NA NA 5qC3.3 NA NA chr5 77524153 CCTxCTT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.994565 0.999218 0.995343 94 0 0 57.548069 0.3125 0.02 0.895817 55 25 1578 672 60 60 0 0 CC 4.203844 14 0 378 0 KEEP - Hopx YES AFB1_3 chr5 88126231 88126231 A G intronic Csn2 NA NA intronic Csn2 NA NA intronic ENSMUSG00000063157 NA NA 5qE1 NA NA chr5 88126231 ATTxAAA A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999859 1 0.999859 294 0 0 164.632326 0.25 0.02 6.57358 204 68 5725 1986 60 60 0 1 AA 5.413543 18 0 491 0 KEEP - Csn2 NO AFB1_3 chr5 8955448 8955448 C A exonic Abcb4 synonymous SNV NM_008830:c.C3330A:p.G1110G exonic Abcb4 synonymous SNV uc008wkr.2:c.C3330A:p.G1110G exonic ENSMUSG00000042476 synonymous SNV ENSMUST00000003717:c.C3330A:p.G1110G 5qA1 NA NA chr5 8955448 GGGxATT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 144 1 0 39.155916 0.217949 0.02 1.10949 61 17 1740 488 60 60 0 0 CC 15.640729 52 0 1459 0 KEEP + Abcb4 YES AFB1_3 chr5 93369228 93369228 C G exonic Shroom3 nonsynonymous SNV NM_001077595:c.C285G:p.F95L exonic Shroom3 nonsynonymous SNV uc008ydu.1:c.C285G:p.F95L exonic ENSMUSG00000029381 nonsynonymous SNV ENSMUST00000172706:c.C285G:p.F95L 5qE2 NA NA chr5 93369228 CTTxGAG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 153 1 0 15.438494 0.2 0.02 -0.306785 28 7 718 197 60 60 0 0 CC 28.246797 94 0 2393 0 KEEP + Shroom3 NO AFB1_3 chr5 98612498 98612498 G C exonic Prdm8 synonymous SNV NM_029947:c.G189C:p.T63T exonic Prdm8 synonymous SNV uc008ygb.1:c.G189C:p.T63T exonic ENSMUSG00000035456 synonymous SNV ENSMUST00000112959:c.G189C:p.T63T 5qE3 NA NA chr5 98612498 CACxGAC G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 92 0 0 13.066364 0.230769 0.02 -0.236661 20 6 516 163 60 60 0 0 GG 16.187056 54 0 1397 0 KEEP + Prdm8 NO AFB1_3 chr6 128568636 128568636 C T intronic Klrb1a NA NA intronic Klrb1a NA NA intronic ENSMUSG00000030361 NA NA 6qF3 "Score=0.909134;Name=No.94073,chr6:128733645" NA chr6 128568636 AAGxGAG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 153 1 1 12.826215 0.15 0.02 -0.385553 34 6 820 173 60 29 0 2 CC 24.36053 91 1 2218 28 KEEP - Klrb1a NO AFB1_3 chr6 128931278 128931278 C G exonic Clec2g nonsynonymous SNV NM_001168223:c.C267G:p.N89K exonic Clec2g nonsynonymous SNV uc009eey.2:c.C252G:p.N84K exonic ENSMUSG00000000248 nonsynonymous SNV ENSMUST00000075789:c.C240G:p.N80K 6qF3 "Score=0.924444;Name=No.94076,chr6:128605086" NA chr6 128931278 AAAxTGG C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 106 0 0 7.978569 0.125 0.02 -0.280363 28 4 767 113 60 57 0 0 CC 19.851597 66 0 1835 0 KEEP + Clec2g NO AFB1_3 chr6 129968843 129968843 T C intronic "Klra15,Klra19,Klra22,Klra6" NA NA ncRNA_intronic Ly49A NA NA intronic ENSMUSG00000061769 NA NA 6qF3 NA NA chr6 129968843 CTCxACA T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 146 2 1 16.985168 0.148148 0.02 1.221651 46 8 1320 230 60 45 0 0 TT 21.95154 73 0 2017 0 KEEP NA Klra15 NO AFB1_3 chr6 130090282 130090282 A G intronic "Klra12,Klra15,Klra22" NA NA ncRNA_intronic Ly49A NA NA upstream ENSMUSG00000079282 NA NA 6qF3 "Score=0.927638;Name=No.94097,chr6:130012765" NA chr6 130090282 ATGxTGT A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 32 4 4 13.305976 1 0.02 -0.114008 0 4 0 114 0 25 1 0 AA 5.113235 17 0 470 0 KEEP NA Klra12 NO AFB1_3 chr6 142607033 142607033 T G exonic Abcc9 nonsynonymous SNV NM_001044720:c.A1995C:p.E665D exonic Abcc9 nonsynonymous SNV uc009epm.1:c.A1995C:p.E665D exonic ENSMUSG00000030249 nonsynonymous SNV ENSMUST00000087527:c.A1995C:p.E665D 6qG2 NA NA chr6 142607033 GTCxTCC T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 187 0 0 13.074472 0.4 0.02 -0.131502 9 6 258 146 60 60 0 0 TT 43.005317 143 0 3937 0 KEEP - Abcc9 NO AFB1_3 chr6 14668031 14668031 A C exonic Ppp1r3a synonymous SNV NM_080464:c.T2883G:p.G961G exonic Ppp1r3a synonymous SNV uc009ayw.1:c.T2883G:p.G961G exonic ENSMUSG00000042717 synonymous SNV ENSMUST00000045096:c.T2883G:p.G961G 6qA1 NA NA chr6 14668031 CGGxCCC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162444 0.162467 0.99986 39 1 0 6.48539 0.461538 0.02 -0.112832 7 6 161 76 60 60 0 0 AA 5.709854 19 0 483 0 KEEP - Ppp1r3a NO AFB1_3 chr6 30497167 30497167 C A exonic Cpa2 synonymous SNV NM_001024698:c.C441A:p.I147I exonic Cpa2 synonymous SNV uc009bfn.1:c.C441A:p.I147I exonic ENSMUSG00000071553 synonymous SNV ENSMUST00000096066:c.C441A:p.I147I 6qA3.3 NA NA chr6 30497167 TATxGGT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 83 0 0 14.887931 0.333333 0.02 -0.157809 12 6 324 170 60 60 0 0 CC 17.121911 57 0 1393 0 KEEP + Cpa2 YES AFB1_3 chr6 30497168 30497168 G A exonic Cpa2 nonsynonymous SNV NM_001024698:c.G442A:p.G148S exonic Cpa2 nonsynonymous SNV uc009bfn.1:c.G442A:p.G148S exonic ENSMUSG00000071553 nonsynonymous SNV ENSMUST00000096066:c.G442A:p.G148S 6qA3.3 NA NA chr6 30497168 ATCxGTT G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 84 0 0 14.718241 0.315789 0.02 -0.166557 13 6 339 170 60 60 0 0 GG 17.137353 57 0 1518 0 KEEP + Cpa2 NO AFB1_3 chr6 37991118 37991118 A T exonic Svopl nonsynonymous SNV NM_177200:c.T127A:p.F43I exonic Svopl nonsynonymous SNV uc009bjm.1:c.T127A:p.F43I exonic ENSMUSG00000029830 nonsynonymous SNV ENSMUST00000096040:c.T127A:p.F43I 6qB1 NA NA chr6 37991118 CGAxGCC A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 77 0 0 13.730454 0.26087 0.02 -0.201699 17 6 488 166 60 60 0 0 AA 13.235185 44 0 1233 0 KEEP - Svopl NO AFB1_3 chr6 48627753 48627753 C G exonic Gimap9 nonsynonymous SNV NM_174960:c.C274G:p.P92A exonic Gimap9 nonsynonymous SNV uc009bvh.1:c.C274G:p.P92A exonic ENSMUSG00000051124 nonsynonymous SNV ENSMUST00000147936:c.C244G:p.P82A 6qB2.3 NA NA chr6 48627753 GGGxCTC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 62 0 0 9.163294 0.210526 0.02 -0.166617 15 4 422 115 60 60 0 0 CC 11.412897 38 0 1024 0 KEEP + Gimap9 NO AFB1_3 chr6 49084827 49084827 C A intronic Igf2bp3 NA NA intronic Igf2bp3 NA NA intronic ENSMUSG00000029814 NA NA 6qB2.3 NA NA chr6 49084827 AAGxAAT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 219 0 0 70.852619 0.26087 0.02 2.38193 85 30 2434 852 60 60 0 0 CC 26.166993 87 0 2430 0 KEEP - Igf2bp3 YES AFB1_3 chr6 83004687 83004687 C A UTR5 Aup1 NA NA UTR5 "Aup1,Htra2" NA NA UTR5 ENSMUSG00000068328 NA NA 6qC3 NA NA chr6 83004687 CGGxGGA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.99649 1 0.99649 162 3 0 96.434994 0.28169 0.02 2.119411 102 40 2599 1140 60 60 0 0 CC 4.490649 15 0 385 0 KEEP + Aup1 YES AFB1_3 chr6 85569999 85569999 T G exonic Alms1 nonsynonymous SNV NM_145223:c.T1812G:p.S604R exonic Alms1 nonsynonymous SNV uc009cpz.1:c.T1812G:p.S604R exonic ENSMUSG00000063810 nonsynonymous SNV ENSMUST00000072018:c.T1812G:p.S604R 6qC3 NA NA chr6 85569999 CAGxCGT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 45 0 0 6.592574 0.176471 0.02 -0.149078 14 3 393 86 60 60 0 0 TT 7.815764 26 0 694 0 KEEP + Alms1 NO AFB1_3 chr6 92109250 92109250 C T exonic Nr2c2 nonsynonymous SNV NM_011630:c.C977T:p.A326V exonic Nr2c2 nonsynonymous SNV uc009cyp.2:c.C977T:p.A326V exonic ENSMUSG00000005893 nonsynonymous SNV ENSMUST00000113460:c.C977T:p.A326V 6qD1 NA NA chr6 92109250 GTGxTTC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.963657 0.963774 0.999879 76 0 0 11.647616 0.117647 0.02 1.247967 45 6 1291 168 60 60 0 0 CC 6.616562 22 0 611 0 KEEP + Nr2c2 NO AFB1_3 chr7 109388205 109388205 C T exonic Rhog nonsynonymous SNV NM_019566:c.G554A:p.G185E exonic Rhog nonsynonymous SNV uc009irk.1:c.G554A:p.G185E exonic ENSMUSG00000073982 nonsynonymous SNV ENSMUST00000098230:c.G554A:p.G185E 7qE3 "Score=0.916519;Name=No.88069,chr4:97900903" NA chr7 109388205 CGCxCAC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 247 4 0 6.328288 0.136364 0.02 -0.192922 19 3 535 87 60 48 0 0 CC 51.077845 170 0 4591 0 KEEP - Rhog NO AFB1_3 chr7 109388508 109388508 A G exonic Rhog nonsynonymous SNV NM_019566:c.T251C:p.I84T exonic Rhog nonsynonymous SNV uc009irk.1:c.T251C:p.I84T exonic ENSMUSG00000073982 nonsynonymous SNV ENSMUST00000098230:c.T251C:p.I84T 7qE3 "Score=0.916519;Name=No.88069,chr4:97900903" NA chr7 109388508 GCAxTGG A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 74 0 2 10.49925 0.172414 0.02 -0.254314 24 5 680 139 60 29 0 0 AA 11.718789 39 0 1037 0 KEEP - Rhog NO AFB1_3 chr7 124787023 124787023 A G exonic Xylt1 nonsynonymous SNV NM_175645:c.A1778G:p.K593R exonic Xylt1 nonsynonymous SNV uc009jjm.1:c.A1778G:p.K593R exonic ENSMUSG00000030657 nonsynonymous SNV ENSMUST00000032892:c.A1778G:p.K593R 7qF2 NA NA chr7 124787023 GAAxGTT A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 78 0 0 34.594781 0.571429 0.02 -0.184175 9 12 260 351 60 60 0 0 AA 14.976874 50 0 1360 0 KEEP + Xylt1 NO AFB1_3 chr7 127422000 127422000 T C exonic Abca14 nonsynonymous SNV NM_026458:c.T3223C:p.F1075L exonic Abca14 nonsynonymous SNV uc009jmn.1:c.T3223C:p.F1075L exonic ENSMUSG00000062017 nonsynonymous SNV ENSMUST00000084640:c.T3223C:p.F1075L 7qF2 NA NA chr7 127422000 GTTxTTA T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.260954 0.260965 0.999957 44 0 0 19.477347 0.4375 0.02 -0.140326 9 7 259 209 60 60 0 0 TT 7.820563 26 0 725 0 KEEP + Abca14 NO AFB1_3 chr7 128103659 128103659 C A exonic Cdr2 nonsynonymous SNV NM_007672:c.G450T:p.Q150H exonic Cdr2 nonsynonymous SNV uc012ftc.1:c.G450T:p.Q150H exonic ENSMUSG00000030878 nonsynonymous SNV ENSMUST00000033169:c.G450T:p.Q150H 7qF2 NA NA chr7 128103659 CTCxTGG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 64 1 0 14.564628 0.714286 0.02 -0.061386 2 5 58 140 60 60 0 0 CC 14.439583 48 0 1370 0 KEEP - Cdr2 YES AFB1_3 chr7 130330150 130330150 A C exonic Tnrc6a synonymous SNV NM_144925:c.A4551C:p.S1517S exonic Tnrc6a synonymous SNV uc009jpf.1:c.A744C:p.S248S exonic ENSMUSG00000052707 synonymous SNV ENSMUST00000171930:c.A828C:p.S276S 7qF3 NA NA chr7 130330150 TTCxCCA A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.99986 37 0 0 8.513266 0.545455 0.02 -0.094637 5 6 131 91 60 60 0 0 AA 3.058755 17 2 461 18 KEEP + Tnrc6a NO AFB1_3 chr7 133995145 133995145 G C intronic Doc2a NA NA intronic Doc2a NA NA UTR3 ENSMUSG00000030689 NA NA 7qF3 NA NA chr7 133995145 TCAxGGA G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 80 0 0 8.370776 0.285714 0.02 -0.122752 10 4 286 101 60 60 0 0 GG 17.447532 58 0 1650 0 KEEP + Doc2a NO AFB1_3 chr7 134535938 134535938 T A exonic E430018J23Rik synonymous SNV NM_198011:c.A390T:p.P130P exonic E430018J23Rik synonymous SNV uc009jvg.2:c.A117T:p.P39P exonic ENSMUSG00000078580 nonsynonymous SNV ENSMUST00000074249:c.A353T:p.H118L 7qF3 "Score=0.909062;Name=No.101632,chr7:134546974" NA chr7 134535938 GCGxGGC T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 172 0 0 16.77001 0.545455 0.02 -0.096465 5 6 140 172 60 60 0 0 TT 44.784905 149 0 3913 0 KEEP - E430018J23Rik NO AFB1_3 chr7 135276851 135276851 A C exonic Itgax nonsynonymous SNV NM_021334:c.A634C:p.S212R exonic Itgax nonsynonymous SNV uc009jyb.1:c.A634C:p.S212R exonic ENSMUSG00000030789 nonsynonymous SNV ENSMUST00000033053:c.A691C:p.S231R 7qF3 NA NA chr7 135276851 TCAxGCC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 90 0 0 20.748638 0.615385 0.02 -0.113971 5 8 144 207 60 60 0 0 AA 18.915001 63 0 1733 0 KEEP + Itgax NO AFB1_3 chr7 148627648 148627648 T G exonic Lrdd nonsynonymous SNV NM_022654:c.A797C:p.H266P exonic Lrdd nonsynonymous SNV uc009klc.1:c.A797C:p.H266P exonic ENSMUSG00000025507 nonsynonymous SNV ENSMUST00000106005:c.A797C:p.H266P 7qF5 NA NA chr7 148627648 AGGxGGA T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099708 0.099721 0.999869 36 0 0 7.403308 0.6 0.02 -0.085146 4 6 101 77 60 60 0 0 TT 4.968004 20 1 516 9 KEEP - Lrdd NO AFB1_3 chr7 149042720 149042720 C G exonic Muc5b nonsynonymous SNV NM_028801:c.C3924G:p.C1308W exonic Muc5b nonsynonymous SNV uc009kmc.1:c.C3924G:p.C1308W exonic ENSMUSG00000066108 nonsynonymous SNV ENSMUST00000084424:c.C3924G:p.C1308W 7qF5 NA NA chr7 149042720 GTGxCAT C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 181 0 0 22.09908 0.5 0.02 -0.140319 8 8 229 231 60 60 0 0 CC 39.96092 133 0 3633 0 KEEP + Muc5b NO AFB1_3 chr7 149687682 149687682 T C ncRNA_intronic Gm14492 NA NA intronic "Gm14492,Tnnt3" NA NA intronic "ENSMUSG00000043795,ENSMUSG00000061723" NA NA 7qF5 NA NA chr7 149687682 CTCxCCC T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 64 0 0 8.386176 0.235294 0.02 -0.271518 13 4 327 105 60 60 0 0 TT 6.111148 28 1 640 20 KEEP - Gm14492 NO AFB1_3 chr7 151007084 151007084 C A exonic Nadsyn1 stopgain SNV NM_030221:c.G139T:p.E47X exonic Nadsyn1 stopgain SNV uc009kqa.1:c.G139T:p.E47X exonic ENSMUSG00000031090 stopgain SNV ENSMUST00000033415:c.G139T:p.E47X 7qF5 NA NA chr7 151007084 TTTxTAG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 55 0 0 10.730757 0.571429 0.02 -0.061382 3 4 86 109 60 60 0 0 CC 11.431655 38 0 1092 0 KEEP - Nadsyn1 YES AFB1_3 chr7 18765985 18765985 C A intronic Igfl3 NA NA intronic Igfl3 NA NA intronic ENSMUSG00000066756 NA NA 7qA2 NA NA chr7 18765985 CCCxTAT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999998 52 1 0 7.443302 0.333333 0.02 -0.078932 6 3 177 85 60 60 0 0 CC 10.227966 34 0 970 0 KEEP + Igfl3 YES AFB1_3 chr7 20011709 20011709 G A exonic Mark4 synonymous SNV NM_172279:c.C1974T:p.F658F exonic "Mark4,mKIAA1860" synonymous SNV uc009flw.1:c.C258T:p.F86F exonic ENSMUSG00000030397 synonymous SNV ENSMUST00000085715:c.C1974T:p.F658F 7qA3 NA NA chr7 20011709 GGGxAAT G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 78 0 0 43.775284 0.681818 0.02 -0.192933 7 15 202 426 60 60 0 0 GG 14.439262 48 0 1363 0 KEEP - Mark4 NO AFB1_3 chr7 27972342 27972342 T A exonic Snrpa nonsynonymous SNV NM_001046637:c.A746T:p.H249L exonic Snrpa nonsynonymous SNV uc009fvg.1:c.A746T:p.H249L exonic ENSMUSG00000061479 nonsynonymous SNV ENSMUST00000080356:c.A746T:p.H249L 7qA3 NA NA chr7 27972342 TCAxGGC T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 0.999999 50 2 0 10.722962 0.444444 0.02 -0.078926 5 4 140 115 60 48 0 0 TT 10.82484 36 0 961 0 KEEP - Snrpa NO AFB1_3 chr7 35070257 35070257 T G UTR5 4931406P16Rik NA NA UTR5 4931406P16Rik NA NA UTR5 ENSMUSG00000066571 NA NA 7qB1 NA NA chr7 35070257 GGGxTCT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 125 0 0 7.879945 0.3125 0.02 -0.417543 33 15 823 140 60 60 0 0 TT 12.389026 47 3 1199 15 KEEP - 4931406P16Rik NO AFB1_3 chr7 4709554 4709554 G T exonic Fam71e2 nonsynonymous SNV NM_172895:c.C1760A:p.A587D exonic Fam71e2 nonsynonymous SNV uc012ewx.1:c.C1760A:p.A587D exonic ENSMUSG00000049952 nonsynonymous SNV ENSMUST00000068750:c.C1439A:p.A480D 7qA1 NA NA chr7 4709554 GTGxCAA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999997 65 1 0 50.126777 0.580645 0.02 -0.271851 13 18 368 507 60 60 0 0 GG 9.624412 32 0 878 0 KEEP - Fam71e2 YES AFB1_3 chr7 50686120 50686120 C A exonic Lim2 nonsynonymous SNV NM_177693:c.C160A:p.Q54K exonic Lim2 nonsynonymous SNV uc009gmp.1:c.C160A:p.Q54K exonic ENSMUSG00000004613 nonsynonymous SNV ENSMUST00000004732:c.C160A:p.Q54K 7qB4 NA NA chr7 50686120 CTGxAGA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 89 2 0 22.013865 0.533333 0.02 -0.131548 7 8 203 227 60 60 0 0 CC 18.951574 63 0 1795 0 KEEP + Lim2 YES AFB1_3 chr7 50892253 50892253 A G exonic Ceacam18 nonsynonymous SNV NM_028236:c.A179G:p.E60G exonic Ceacam18 nonsynonymous SNV uc009gnf.1:c.A179G:p.E60G exonic ENSMUSG00000030472 nonsynonymous SNV ENSMUST00000032663:c.A179G:p.E60G 7qB4 NA NA chr7 50892253 TGGxGTA A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 90 2 0 32.906512 0.48 0.02 -0.219248 13 12 372 347 60 60 0 0 AA 17.446971 58 0 1637 0 KEEP + Ceacam18 NO AFB1_3 chr7 52263960 52263960 G C exonic Scaf1 nonsynonymous SNV NM_001008422:c.C864G:p.S288R exonic Scaf1 nonsynonymous SNV uc009gso.1:c.C864G:p.S288R exonic ENSMUSG00000038406 nonsynonymous SNV ENSMUST00000085383:c.C864G:p.S288R 7qB4 NA NA chr7 52263960 GCGxCTG G C AFB1_3_GATCAG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.999556 0.999559 0.999997 114 0 0 124.263985 0.535714 0.02 0.95859 39 45 1114 1280 60 60 0 0 GG 8.718445 29 0 820 0 KEEP - Scaf1 NO AFB1_3 chr7 53053886 53053886 C A exonic Lmtk3 nonsynonymous SNV NM_001005511:c.C3907A:p.P1303T exonic "Lmtk3,aatyk3" nonsynonymous SNV uc009gxe.1:c.C3907A:p.P1303T exonic ENSMUSG00000062044 nonsynonymous SNV ENSMUST00000120005:c.C3907A:p.P1303T 7qB4 NA NA chr7 53053886 GAGxCAG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 82 0 0 7.332415 0.375 0.02 -0.070153 5 3 143 82 60 60 0 0 CC 16.77974 56 0 1522 0 KEEP + Lmtk3 YES AFB1_3 chr7 74904225 74904225 C A exonic Synm nonsynonymous SNV NM_183312:c.G290T:p.R97L exonic Synm nonsynonymous SNV uc009hiv.1:c.G290T:p.R97L exonic ENSMUSG00000030554 nonsynonymous SNV ENSMUST00000051389:c.G290T:p.R97L 7qC NA NA chr7 74904225 TCCxGCT C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 55 0 0 11.00049 0.5 0.02 -0.070139 4 4 102 115 60 60 0 0 CC 11.409887 38 0 994 0 KEEP - Synm YES AFB1_3 chr7 88070585 88070585 A G intronic Sec11a NA NA intronic Sec11a NA NA intronic ENSMUSG00000025724 NA NA 7qD3 NA NA chr7 88070585 AGAxCAA A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 87 0 0 16.582446 1 0.02 -0.043848 0 5 0 142 0 60 0 0 AA 24.642289 82 0 2179 0 KEEP - Sec11a NO AFB1_3 chr7 89746580 89746580 T C exonic Adamtsl3 synonymous SNV NM_001190374:c.T4233C:p.P1411P exonic Adamtsl3 synonymous SNV uc009ida.2:c.T4233C:p.P1411P exonic ENSMUSG00000070469 synonymous SNV ENSMUST00000094237:c.T1353C:p.P451P 7qD3 NA NA chr7 89746580 CCCxAAG T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 53 0 0 19.858804 1 0.02 -0.061361 0 6 0 170 0 60 0 0 TT 12.626386 42 0 1141 0 KEEP + Adamtsl3 NO AFB1_3 chr8 101724141 101724141 A C exonic Cdh8 nonsynonymous SNV NM_001039154:c.T827G:p.F276C exonic Cdh8 nonsynonymous SNV uc009mzq.1:c.T293G:p.F98C exonic ENSMUSG00000036510 nonsynonymous SNV ENSMUST00000093249:c.T827G:p.F276C 8qD1 NA NA chr8 101724141 GCAxATT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 94 0 0 12.48567 0.176471 0.02 -0.298161 28 6 797 165 60 60 0 0 AA 14.738146 49 0 1361 0 KEEP - Cdh8 NO AFB1_3 chr8 107455817 107455817 G A exonic Ces2e nonsynonymous SNV NM_001163756:c.G1213A:p.A405T exonic Ces2e nonsynonymous SNV uc009nbg.2:c.G1213A:p.A405T exonic ENSMUSG00000031886 nonsynonymous SNV ENSMUST00000034355:c.G1213A:p.A405T 8qD3 NA NA chr8 107455817 CAAxCAC G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 113 0 0 9.626615 0.113636 0.02 -0.38587 39 5 1122 140 60 60 0 0 GG 17.12591 57 0 1594 0 KEEP + Ces2e NO AFB1_3 chr8 107773322 107773322 A C exonic D230025D16Rik nonsynonymous SNV NM_145604:c.A1010C:p.N337T exonic D230025D16Rik nonsynonymous SNV uc009nbu.2:c.A467C:p.N156T exonic ENSMUSG00000031889 nonsynonymous SNV ENSMUST00000034361:c.A1010C:p.N337T 8qD3 NA NA chr8 107773322 AAAxTGC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.948401 0.948402 0.999999 99 0 0 24.530939 0.229167 0.02 -0.420927 37 11 1046 305 60 60 0 0 AA 10.827317 36 0 985 0 KEEP + D230025D16Rik NO AFB1_3 chr8 109422426 109422426 A C exonic Cirh1a nonsynonymous SNV NM_011574:c.A436C:p.S146R exonic Cirh1a nonsynonymous SNV uc009ngr.2:c.A436C:p.S146R exonic ENSMUSG00000041438 nonsynonymous SNV ENSMUST00000047629:c.A436C:p.S146R 8qD3 NA NA chr8 109422426 AAAxGTA A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 77 0 0 10.437124 0.333333 0.02 -0.131507 10 5 286 122 60 60 0 0 AA 14.737453 49 0 1355 0 KEEP + Cirh1a NO AFB1_3 chr8 119946849 119946849 C T intronic Cmip NA NA intronic 4933407C03Rik NA NA intronic ENSMUSG00000034390 NA NA 8qE1 NA NA chr8 119946849 CGCxGCA C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 0.999999 108 1 0 11.343036 0.090909 0.02 1.108209 60 6 1416 172 60 60 0 0 CC 10.812567 36 0 866 0 KEEP + Cmip NO AFB1_3 chr8 124065688 124065688 G T UTR5 1700018B08Rik NA NA UTR5 1700018B08Rik NA NA UTR5 ENSMUSG00000031809 NA NA 8qE1 NA NA chr8 124065688 TGCxCTA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 89 1 0 39.283622 0.454545 0.02 -0.289276 18 15 501 420 60 60 0 0 GG 14.087941 47 0 1180 0 KEEP - 1700018B08Rik YES AFB1_3 chr8 13073704 13073704 A G exonic Proz nonsynonymous SNV NM_025834:c.A974G:p.E325G exonic Proz nonsynonymous SNV uc009kwu.1:c.A974G:p.E325G exonic ENSMUSG00000031445 nonsynonymous SNV ENSMUST00000033822:c.A974G:p.E325G 8qA1.1 NA NA chr8 13073704 AGGxATG A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 140 0 0 12.4728 0.12766 0.02 -0.412168 41 6 1160 174 60 60 0 0 AA 22.557553 75 0 2070 0 KEEP + Proz NO AFB1_3 chr8 19497727 19497727 C T UTR3 Defb7 NA NA UTR3 Defb7 NA NA UTR3 ENSMUSG00000037790 NA NA 8qA1.3 NA NA chr8 19497727 CTCxATG C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.322777 0.322807 0.999909 41 0 1 11.867313 0.277778 0.02 -0.157858 13 5 376 141 60 37 0 0 CC 7.204487 24 0 675 0 KEEP + Defb7 NO AFB1_3 chr8 20019797 20019797 G A ncRNA_intronic "2610005L07Rik,6820431F20Rik" NA NA exonic Gm10348 stopgain SNV uc009lbg.1:c.C478T:p.R160X ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20019797 ATCxGAA G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 253 3 80 7.861289 0.105263 0.02 -0.333082 34 4 878 115 43 29 0 0 GG 42.987507 143 0 3781 0 KEEP NA 2610005L07Rik NO AFB1_3 chr8 20020149 20020149 C T ncRNA_intronic "2610005L07Rik,6820431F20Rik" NA NA exonic Gm10348 synonymous SNV uc009lbg.1:c.G126A:p.Q42Q ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020149 AAGxTGC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 211 7 51 9.596368 0.151515 0.02 -0.324304 28 5 747 133 60 37 0 0 CC 44.118177 147 0 3878 0 KEEP NA 2610005L07Rik NO AFB1_3 chr8 24068784 24068784 G A intergenic "Kat6a(dist=15050),Ank1(dist=16524)" NA NA intergenic "Myst3(dist=15050),Ank1(dist=16570)" NA NA ncRNA_exonic ENSMUSG00000058567 NA NA 8qA2 NA NA chr8 24068784 CAGxGCT G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 262 0 6 13.324979 0.084337 0.02 1.048112 76 7 2184 204 60 22 0 0 GG 44.43466 148 0 4085 0 KEEP NA Kat6a NO AFB1_3 chr8 24068789 24068789 T C intergenic "Kat6a(dist=15055),Ank1(dist=16519)" NA NA intergenic "Myst3(dist=15055),Ank1(dist=16565)" NA NA ncRNA_exonic ENSMUSG00000058567 NA NA 8qA2 NA NA chr8 24068789 CTAxATT T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 255 0 5 10.625702 0.069767 0.02 0.932327 80 6 2217 172 60 22 0 0 TT 42.993488 143 0 3806 0 KEEP NA Kat6a NO AFB1_3 chr8 24268051 24268051 C A intronic Nkx6-3 NA NA intronic Nkx6-3 NA NA intronic ENSMUSG00000063672 NA NA 8qA2 NA NA chr8 24268051 TTGxAGG C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.936459 0.941741 0.994391 76 0 0 27.561002 0.26087 0.02 -0.412016 34 12 972 333 60 60 0 1 CC 3.910449 13 0 366 0 KEEP + Nkx6-3 YES AFB1_3 chr8 26310655 26310655 T A exonic Tacc1 nonsynonymous SNV NM_177089:c.A188T:p.E63V exonic Tacc1 nonsynonymous SNV uc009lfs.1:c.A188T:p.E63V exonic ENSMUSG00000065954 nonsynonymous SNV ENSMUST00000084030:c.A188T:p.E63V 8qA2 NA NA chr8 26310655 GTCxCAA T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999997 1 0.999997 237 2 0 14.940473 0.050761 0.02 3.064458 187 10 5302 273 60 60 0 1 TT 7.562442 30 1 840 13 KEEP - Tacc1 NO AFB1_3 chr8 27268877 27268877 C T UTR5 Thap1 NA NA UTR5 Thap1 NA NA UTR5 ENSMUSG00000037214 NA NA 8qA2 NA NA chr8 27268877 CCCxTTC C T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999863 1 0.999863 153 2 0 17.859766 0.08 0.02 2.250678 115 10 3134 282 60 25 0 0 CC 6.013637 20 0 546 0 KEEP + Thap1 NO AFB1_3 chr8 98240075 98240075 G T exonic Setd6 nonsynonymous SNV NM_001035123:c.G239T:p.R80L exonic Setd6 nonsynonymous SNV uc009myv.1:c.G239T:p.R80L exonic ENSMUSG00000031671 nonsynonymous SNV ENSMUST00000034096:c.G239T:p.R80L 8qD1 NA NA chr8 98240075 CGCxGGA G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 49 0 0 18.739531 0.466667 0.02 -0.1315 8 7 201 199 60 60 0 0 GG 8.405892 28 0 642 0 KEEP + Setd6 YES AFB1_3 chr9 109457649 109457649 A C intronic Fbxw15 NA NA intronic Fbxw15 NA NA intronic ENSMUSG00000074060 NA NA 9qF2 NA NA chr9 109457649 AGAxGCA A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 110 1 0 35.660454 0.271186 0.02 1.079975 43 16 1225 430 60 60 0 0 AA 15.038155 50 0 1374 0 KEEP - Fbxw15 NO AFB1_3 chr9 119581394 119581394 A C intronic Scn10a NA NA intronic Scn10a NA NA intronic ENSMUSG00000034533 NA NA 9qF4 NA NA chr9 119581394 TTAxCTC A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.608972 0.612407 0.994391 41 0 0 21.121346 0.333333 0.02 -0.236444 18 9 472 243 60 60 0 0 AA 3.909673 13 0 352 0 KEEP - Scn10a NO AFB1_3 chr9 120350539 120350539 A C exonic Myrip nonsynonymous SNV NM_144557:c.A1736C:p.K579T exonic Myrip nonsynonymous SNV uc009scn.1:c.A1736C:p.K579T exonic ENSMUSG00000041794 nonsynonymous SNV ENSMUST00000048121:c.A1736C:p.K579T 9qF4 NA NA chr9 120350539 AGAxGCT A C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 70 0 0 12.7062 0.285714 0.02 -0.184135 15 6 430 153 60 60 0 0 AA 12.332841 41 0 1151 0 KEEP + Myrip NO AFB1_3 chr9 26601647 26601647 A T intronic Glb1l2 NA NA intronic Glb1l2 NA NA intronic ENSMUSG00000036395 NA NA 9qA4 NA NA chr9 26601647 GAGxCCC A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 64 0 0 6.932147 0.375 0.02 -0.070142 5 3 139 78 60 60 0 0 AA 13.828654 46 0 1225 0 KEEP - Glb1l2 NO AFB1_3 chr9 32129790 32129790 G T exonic Kcnj5 synonymous SNV NM_010605:c.C813A:p.V271V exonic Kcnj5 synonymous SNV uc009orw.1:c.C813A:p.V271V exonic ENSMUSG00000032034 synonymous SNV ENSMUST00000034533:c.C813A:p.V271V 9qA4 NA NA chr9 32129790 GGAxACC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 88 0 0 6.472748 0.2 0.02 -0.131555 12 3 357 83 60 60 0 0 GG 20.447293 68 0 1907 0 KEEP - Kcnj5 YES AFB1_3 chr9 53357033 53357033 T C exonic Npat synonymous SNV NM_001081152:c.T175C:p.L59L exonic Npat synonymous SNV uc009pmf.1:c.T175C:p.L59L exonic ENSMUSG00000033054 synonymous SNV ENSMUST00000035850:c.T175C:p.L59L 9qA5.3 NA NA chr9 53357033 AACxTGA T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.999699 0.999768 0.999931 120 0 0 31.142329 0.159091 0.02 1.021781 74 14 2126 412 60 60 0 0 TT 7.519935 25 0 700 0 KEEP + Npat NO AFB1_3 chr9 56483002 56483002 C G intronic Lingo1 NA NA UTR5 Lingo1 NA NA UTR5 ENSMUSG00000049556 NA NA 9qB NA NA chr9 56483002 CCGxCCG C G AFB1_3_GATCAG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.993618 0.999984 0.993634 116 1 0 31.367316 0.142857 0.02 2.469625 90 15 2573 429 60 60 0 0 CC 3.609985 12 0 352 0 KEEP - Lingo1 NO AFB1_3 chr9 58209093 58209093 C A exonic Tbc1d21 synonymous SNV NM_028854:c.G789T:p.T263T exonic Tbc1d21 synonymous SNV uc009pww.1:c.G789T:p.T263T exonic ENSMUSG00000036244 synonymous SNV ENSMUST00000040217:c.G789T:p.T263T 9qB NA NA chr9 58209093 CCCxGTC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 61 0 0 10.129722 1 0.02 -0.026311 0 3 0 87 0 60 0 0 CC 13.824607 46 0 1180 0 KEEP - Tbc1d21 YES AFB1_3 chr9 60358014 60358014 A C intronic Thsd4 NA NA intronic Thsd4 NA NA exonic ENSMUSG00000052445 nonsynonymous SNV ENSMUST00000064303:c.T421G:p.F141V 9qB NA NA chr9 60358014 GGAxGGG A C AFB1_3_GATCAG Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.454419 0.457757 0.992708 32 0 0 10.766455 0.227273 0.02 -0.192922 17 5 484 135 60 60 0 0 AA 3.007903 10 0 279 0 KEEP - Thsd4 NO AFB1_3 chr9 65125877 65125877 C G exonic Cilp nonsynonymous SNV NM_173385:c.C1446G:p.C482W exonic Cilp nonsynonymous SNV uc009qcz.1:c.C1446G:p.C482W exonic ENSMUSG00000042254 nonsynonymous SNV ENSMUST00000094637:c.C1446G:p.C482W 9qC NA NA chr9 65125877 CTGxCAA C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999997 38 0 0 11.431554 0.571429 0.02 -0.06139 3 4 86 116 60 60 0 0 CC 8.675497 29 0 768 0 KEEP + Cilp NO AFB1_3 chr9 72816953 72816953 A T exonic Dyx1c1 nonsynonymous SNV NM_001163725:c.A642T:p.K214N exonic Dyx1c1 nonsynonymous SNV uc012gwu.1:c.A642T:p.K214N exonic "ENSMUSG00000089865,ENSMUSG00000092192" nonsynonymous SNV ENSMUST00000098567:c.A642T:p.K214N 9qD NA NA chr9 72816953 CAAxTTA A T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 116 0 0 20.12287 0.195652 0.02 -0.403399 37 9 1047 257 60 60 0 0 AA 14.436777 48 0 1320 0 KEEP + Dyx1c1 NO AFB1_3 chr9 97426754 97426754 C A exonic Clstn2 nonsynonymous SNV NM_022319:c.G1319T:p.R440L exonic Clstn2 nonsynonymous SNV uc009rde.1:c.G89T:p.R30L exonic ENSMUSG00000032452 nonsynonymous SNV ENSMUST00000035027:c.G1319T:p.R440L 9qE3.3 NA NA chr9 97426754 GGGxGAA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 85 2 0 14.865186 0.375 0.02 -0.140301 10 6 279 166 60 60 0 0 CC 17.681186 59 0 1440 0 KEEP - Clstn2 YES AFB1_3 chrX 105065822 105065822 T G exonic Fam46d nonsynonymous SNV NM_001163104:c.T170G:p.V57G exonic Fam46d nonsynonymous SNV uc012hnv.1:c.T170G:p.V57G exonic ENSMUSG00000073007 nonsynonymous SNV ENSMUST00000143975:c.T170G:p.V57G XqD NA NA chrX 105065822 TTGxTGT T G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.03676 0.036766 0.99986 26 0 0 8.324839 0.5 0.02 -0.052617 3 3 83 87 60 60 0 0 TT 5.714415 19 0 519 0 KEEP + Fam46d NO AFB1_3 chrX 131256066 131256066 G T UTR3 Armcx1 NA NA UTR3 Armcx1 NA NA UTR3 ENSMUSG00000033460 NA NA XqE3 NA NA chrX 131256066 TTAxATC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.968715 0.97082 0.997832 71 0 0 9.102244 0.09434 0.02 1.132528 48 5 1406 139 60 60 0 0 GG 4.813253 16 0 459 0 KEEP + Armcx1 YES AFB1_3 chrX 13177498 13177498 C G exonic Cask nonsynonymous SNV NM_001284503:c.G1000C:p.D334H exonic Cask nonsynonymous SNV uc009srp.1:c.G1000C:p.D334H exonic ENSMUSG00000031012 nonsynonymous SNV ENSMUST00000156096:c.G922C:p.D308H XqA1.1 NA NA chrX 13177498 GGTxTTC C G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 40 0 0 36.873564 0.65 0.02 -0.175391 7 13 206 363 60 60 0 0 CC 5.11315 17 0 479 0 KEEP - Cask NO AFB1_3 chrX 147632719 147632719 G T exonic Wnk3 nonsynonymous SNV NM_001271678:c.G37T:p.D13Y intergenic "Tsr2(dist=101633),A230072E10Rik(dist=93798)" NA NA ncRNA_exonic ENSMUSG00000041245 NA NA XqF3 NA NA chrX 147632719 GAAxATT G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 74 0 0 69.140997 0.727273 0.02 -0.289383 9 24 265 661 60 60 0 0 GG 9.025214 30 0 867 0 KEEP + Wnk3 YES AFB1_3 chrX 147904071 147904071 G T exonic Fam120c nonsynonymous SNV NM_198105:c.G3074T:p.R1025L exonic Fam120c nonsynonymous SNV uc009upc.1:c.G3074T:p.R1025L exonic ENSMUSG00000025262 nonsynonymous SNV ENSMUST00000073364:c.G3074T:p.R1025L XqF3 NA NA chrX 147904071 CCCxCTC G T AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 73 1 0 9.171295 0.222222 0.02 -0.15768 14 4 340 114 60 60 0 0 GG 13.771602 46 0 1099 0 KEEP + Fam120c YES AFB1_3 chrX 57532040 57532040 C A exonic Atp11c stopgain SNV NM_001001798:c.G1597T:p.E533X exonic Atp11c stopgain SNV uc009tic.1:c.G1546T:p.E516X exonic ENSMUSG00000062949 stopgain SNV ENSMUST00000033480:c.G1597T:p.E533X XqA6 NA NA chrX 57532040 GTTxATA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.991846 0.9982 0.993634 88 0 0 53.440102 0.297297 0.02 1.046248 52 22 1505 625 60 60 0 0 CC 3.610161 12 0 348 0 KEEP - Atp11c YES AFB1_3 chrX 71102840 71102840 T A exonic L1cam nonsynonymous SNV NM_008478:c.A2789T:p.D930V exonic L1cam nonsynonymous SNV uc009tmv.1:c.A2789T:p.D930V exonic ENSMUSG00000031391 nonsynonymous SNV ENSMUST00000066576:c.A2774T:p.D925V XqA7.3 NA NA chrX 71102840 GTGxCCG T A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 54 0 0 47.980677 0.8 0.02 -0.175382 4 16 113 447 60 60 0 0 TT 9.622454 32 0 864 0 KEEP - L1cam NO AFB1_3 chrX 71597708 71597708 G A UTR3 Lage3 NA NA UTR3 Lage3 NA NA UTR3 ENSMUSG00000015289 NA NA XqA7.3 NA NA chrX 71597708 ATGxGTC G A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.850137 0.851984 0.997832 57 2 0 12.768771 0.157895 0.02 -0.33325 32 6 917 171 60 46 0 0 GG 4.812859 16 0 450 0 KEEP - Lage3 NO AFB1_3 chrX 71612868 71612868 G C exonic "Ubl4,Ubl4a" nonsynonymous SNV NM_145405:c.C421G:p.R141G exonic Ubl4 nonsynonymous SNV uc009tos.2:c.C421G:p.R141G exonic ENSMUSG00000015290 nonsynonymous SNV ENSMUST00000155676:c.C421G:p.R141G XqA7.3 NA NA chrX 71612868 AGCxGCT G C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 64 1 0 12.646921 0.416667 0.02 -0.105166 7 5 165 138 60 60 0 0 GG 12.318527 41 0 1030 0 KEEP NA Ubl4 NO AFB1_3 chrX 7207332 7207332 C A exonic Cacna1f nonsynonymous SNV NM_019582:c.C4480A:p.P1494T exonic Cacna1f nonsynonymous SNV uc012hei.1:c.C826A:p.P276T exonic ENSMUSG00000031142 nonsynonymous SNV ENSMUST00000156047:c.C628A:p.P210T XqA1.1 NA NA chrX 7207332 CAGxCCC C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 139 2 0 10.322349 0.444444 0.02 -0.078926 5 4 145 111 60 60 0 0 CC 31.871638 106 0 2908 0 KEEP + Cacna1f YES AFB1_3 chrX 81618700 81618700 T C intronic Dmd NA NA intronic Dmd NA NA intronic ENSMUSG00000045103 NA NA XqC1 NA NA chrX 81618700 TTAxTTA T C AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL COVERED 0.987827 0.995084 0.992708 79 0 0 113.704711 0.61194 0.02 1.304747 26 41 725 1136 70 60 0 0 TT 3.007435 10 0 271 0 KEEP + Dmd NO AFB1_3 chrX 93485834 93485834 C A exonic Vsig4 nonsynonymous SNV NM_177789:c.G407T:p.R136L exonic Vsig4 nonsynonymous SNV uc009tui.1:c.G407T:p.R136L exonic ENSMUSG00000044206 nonsynonymous SNV ENSMUST00000050707:c.G407T:p.R136L XqC3 NA NA chrX 93485834 TTCxGAA C A AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 73 2 0 7.954999 0.428571 0.02 -0.061386 4 3 112 86 60 60 0 0 CC 17.117468 57 0 1435 0 KEEP - Vsig4 YES AFB1_3 chrX 97812237 97812237 A G splicing Arr3(NM_133205:exon13:c.906-2A>G) NA NA splicing Arr3(uc009twd.2:exon13:c.906-2A>G) NA NA splicing "ENSMUSG00000060890(ENSMUST00000113769:exon13:c.906-2A>G,ENSMUST00000082016:exon12:c.1304-2A>G)" NA NA XqC3 NA NA chrX 97812237 TCAxGTC A G AFB1_3_GATCAG 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 66 0 0 10.999472 0.5 0.02 -0.070158 4 4 114 115 60 60 0 0 AA 14.737538 49 0 1360 0 KEEP + Arr3 NO AID_1 chr10 127101331 127101331 C T exonic Nab2 nonsynonymous SNV NM_001122895:c.G947A:p.S316N exonic Nab2 nonsynonymous SNV uc007hkc.2:c.G947A:p.S316N exonic ENSMUSG00000025402 nonsynonymous SNV ENSMUST00000026469:c.G947A:p.S316N 10qD3 NA NA chr10 127101331 AAGxTAA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 235 0 0 70.876213 0.367089 0.02 1.002486 50 29 1435 796 60 60 0 0 CC 36.656026 122 0 3375 0 KEEP + Nab2 YES AID_1 chr10 127303929 127303929 C A intronic BC089597 NA NA intronic BC089597 NA NA intronic ENSMUSG00000074639 NA NA 10qD3 NA NA chr10 127303929 TACxATT C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1068 0 0 2436.357124 0.930572 0.02 21.404653 57 764 1680 21624 60 60 0 0 CC 35.488083 118 0 3366 0 KEEP + BC089597 NO AID_1 chr10 128348930 128348930 G A intronic Cd63 NA NA intronic Cd63 NA NA intronic ENSMUSG00000025351 NA NA 10qD3 NA NA chr10 128348930 TAAxCAG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 100 0 0 33.745063 0.451613 0.02 -0.398886 17 14 458 364 60 60 0 0 GG 14.935 50 0 1278 0 KEEP + Cd63 YES AID_1 chr10 129106960 129106960 A T exonic Olfr801 nonsynonymous SNV NM_146285:c.T614A:p.L205H exonic Olfr801 nonsynonymous SNV uc007hqi.1:c.T614A:p.L205H exonic ENSMUSG00000058513 nonsynonymous SNV ENSMUST00000072063:c.T614A:p.L205H 10qD3 NA NA chr10 129106960 ACAxGTG A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 171 1 0 41.122383 0.285714 0.02 1.134103 45 18 1281 489 60 60 0 0 AA 26.142942 87 0 2418 0 KEEP - Olfr801 NO AID_1 chr10 24315717 24315717 G A exonic Ctgf synonymous SNV NM_010217:c.G99A:p.Q33Q exonic Ctgf synonymous SNV uc011xbr.1:c.G99A:p.Q33Q exonic ENSMUSG00000019997 synonymous SNV ENSMUST00000020171:c.G99A:p.Q33Q 10qA4 NA NA chr10 24315717 TCAxTGC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043633 0.043787 0.99649 25 0 0 7.754662 0.428571 0.02 -0.061388 4 3 117 84 60 60 0 0 GG 4.512283 15 0 427 0 KEEP + Ctgf YES AID_1 chr10 24316328 24316328 G A exonic Ctgf synonymous SNV NM_010217:c.G462A:p.K154K exonic Ctgf synonymous SNV uc011xbr.1:c.G462A:p.K154K exonic ENSMUSG00000019997 synonymous SNV ENSMUST00000020171:c.G462A:p.K154K 10qA4 NA NA chr10 24316328 CAAxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 128 4 0 27.631809 0.255319 0.02 -0.412159 35 12 993 335 60 60 0 0 GG 20.131764 67 0 1836 0 KEEP + Ctgf YES AID_1 chr10 78657384 78657384 T C exonic Vmn2r80 synonymous SNV NM_001103368:c.T2298C:p.S766S exonic Vmn2r80 synonymous SNV uc009uzz.1:c.T2298C:p.S766S exonic ENSMUSG00000091888 synonymous SNV ENSMUST00000165834:c.T2298C:p.S766S 10qC1 NA NA chr10 78657384 GAGxTAC T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 447 0 0 126.541378 0.296512 0.02 4.052948 121 51 3353 1476 60 60 0 0 TT 67.308152 224 0 6013 0 KEEP + Vmn2r80 NO AID_1 chr10 80642478 80642478 A C exonic Eef2 nonsynonymous SNV NM_007907:c.A1087C:p.T363P exonic Eef2 nonsynonymous SNV uc007gge.2:c.A1087C:p.T363P exonic ENSMUSG00000034994 nonsynonymous SNV ENSMUST00000047864:c.A1087C:p.T363P 10qC1 NA NA chr10 80642478 GTCxCTG A C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 122 0 0 24.180454 0.30303 0.02 -0.29715 23 10 639 282 60 60 0 0 AA 19.241245 64 0 1715 0 KEEP + Eef2 NO AID_1 chr11 100118647 100118647 G A exonic Krt17 synonymous SNV NM_010663:c.C1194T:p.Y398Y exonic Krt17 synonymous SNV uc007lks.1:c.C1194T:p.Y398Y exonic ENSMUSG00000035557 nonsynonymous SNV ENSMUST00000107407:c.C233T:p.T78I 11qD NA NA chr11 100118647 CTTxTAC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 125 0 0 48.989434 0.33871 0.02 1.054073 41 21 1180 562 60 60 0 0 GG 15.942286 53 0 1494 0 KEEP - Krt17 YES AID_1 chr11 102807429 102807429 C G exonic C1ql1 nonsynonymous SNV NM_011795:c.G347C:p.S116T exonic C1ql1 nonsynonymous SNV uc007lsz.2:c.G347C:p.S116T exonic ENSMUSG00000045532 nonsynonymous SNV ENSMUST00000057849:c.G347C:p.S116T 11qE1 NA NA chr11 102807429 CCGxTGC C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.227586 0.229173 0.993072 28 0 0 9.331111 0.266667 0.02 -0.131551 11 4 324 112 60 60 0 0 CC 3.305602 11 0 302 0 KEEP - C1ql1 NO AID_1 chr11 106362434 106362434 G A downstream Snord104 NA NA downstream Snord104 NA NA upstream;downstream ENSMUSG00000080540;ENSMUSG00000065126 NA NA 11qE1 NA NA chr11 106362434 TTCxCTT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 155 0 0 35.893809 0.246154 0.02 1.027974 49 16 1329 440 60 60 0 0 GG 21.044501 70 0 1860 0 KEEP NA Snord104 YES AID_1 chr11 115884865 115884865 G A intronic H3f3b NA NA intronic H3f3b NA NA intronic ENSMUSG00000016559 NA NA 11qE2 "Score=0.978137;Name=No.12829,chr1:180229445" NA chr11 115884865 AGAxCAA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 102 0 0 14.757757 0.162791 0.02 -0.376075 36 7 990 197 60 60 0 0 GG 14.116948 47 0 1294 0 KEEP - H3f3b YES AID_1 chr11 118216328 118216328 G T exonic Timp2 nonsynonymous SNV NM_011594:c.C77A:p.A26D exonic Timp2 nonsynonymous SNV uc007mow.1:c.C77A:p.A26D exonic ENSMUSG00000017466 nonsynonymous SNV ENSMUST00000017610:c.C77A:p.A26D 11qE2 NA NA chr11 118216328 CAGxCGT G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16246 0.162467 0.999957 44 0 0 9.891252 0.333333 0.02 -0.113452 8 4 227 113 60 60 0 0 GG 7.819715 26 0 711 0 KEEP - Timp2 NO AID_1 chr11 121817933 121817933 T C intergenic "Ptchd3(dist=113183),NONE(dist=NONE)" NA NA intergenic "Ptchd3(dist=112705),NONE(dist=NONE)" NA NA intronic ENSMUSG00000078564 NA NA 11qE2 "Score=0.950902;Name=No.13053,chr11:121784069" NA chr11 121817933 CCCxGTG T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 195 17 0 9.718004 0.090909 0.02 1.162391 50 5 1404 146 60 37 0 0 TT 28.87144 96 0 2635 0 KEEP NA Ptchd3 NO AID_1 chr11 34403393 34403393 G T exonic Dock2 nonsynonymous SNV NM_033374:c.C2398A:p.P800T exonic Dock2 nonsynonymous SNV uc007ikx.1:c.C2398A:p.P800T exonic ENSMUSG00000020143 nonsynonymous SNV ENSMUST00000101364:c.C259A:p.P87T 11qA4 NA NA chr11 34403393 AAGxGAT G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 93 2 0 10.126471 0.135135 0.02 -0.324495 32 5 932 141 60 60 0 0 GG 9.014155 30 0 824 0 KEEP - Dock2 NO AID_1 chr11 50191882 50191882 G A exonic Hnrnph1 nonsynonymous SNV NM_021510:c.G50A:p.G17D exonic Hnrnph1 nonsynonymous SNV uc007isk.1:c.G50A:p.G17D exonic ENSMUSG00000007850 nonsynonymous SNV ENSMUST00000069304:c.G50A:p.G17D 11qB1.3 NA NA chr11 50191882 GGGxCTT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 139 2 0 17.954907 0.225 0.02 -0.349407 31 9 879 229 60 60 0 0 GG 19.227946 64 0 1729 0 KEEP + Hnrnph1 YES AID_1 chr11 60525459 60525459 T G intronic Llgl1 NA NA intronic Llgl1 NA NA intronic ENSMUSG00000020536 NA NA 11qB2 NA NA chr11 60525459 GAAxTTT T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 70 2 0 19.992354 0.296296 0.02 -0.236763 19 8 523 233 60 60 0 0 TT 9.32256 31 0 833 0 KEEP + Llgl1 NO AID_1 chr11 66904313 66904313 C G exonic Myh3 nonsynonymous SNV NM_001099635:c.C2225G:p.A742G exonic Myh3 nonsynonymous SNV uc007jlx.1:c.C2225G:p.A742G exonic ENSMUSG00000020908 nonsynonymous SNV ENSMUST00000007301:c.C2225G:p.A742G 11qB3 NA NA chr11 66904313 AAGxTTG C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 150 1 0 29.182033 0.2 0.02 1.214739 52 13 1487 371 60 60 0 0 CC 18.648694 62 0 1726 0 KEEP + Myh3 NO AID_1 chr11 67669702 67669702 A G exonic Usp43 nonsynonymous SNV NM_173754:c.T2680C:p.S894P exonic Usp43 nonsynonymous SNV uc007jnd.1:c.T517C:p.S173P exonic ENSMUSG00000020905 nonsynonymous SNV ENSMUST00000021288:c.T2680C:p.S894P 11qB3 NA NA chr11 67669702 ATGxGGA A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 125 0 0 25.730624 0.229167 0.02 -0.420946 37 11 1054 317 60 60 0 0 AA 18.041736 60 0 1660 0 KEEP - Usp43 NO AID_1 chr11 69723775 69723775 T C exonic Neurl4 nonsynonymous SNV NM_001013414:c.T3541C:p.F1181L exonic Neurl4 nonsynonymous SNV uc011xxf.1:c.T3475C:p.F1159L exonic ENSMUSG00000047284 nonsynonymous SNV ENSMUST00000108617:c.T3475C:p.F1159L 11qB3 NA NA chr11 69723775 GACxTCC T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999999 79 2 0 10.272855 0.185185 0.02 -0.254262 22 5 634 135 60 60 0 0 TT 10.517713 35 0 953 0 KEEP + Neurl4 NO AID_1 chr11 72789070 72789070 C A exonic Atp2a3 nonsynonymous SNV NM_001163336:c.C1013A:p.S338Y exonic Atp2a3 nonsynonymous SNV uc007jzo.2:c.C1013A:p.S338Y exonic ENSMUSG00000020788 nonsynonymous SNV ENSMUST00000021142:c.C1013A:p.S338Y 11qB4 NA NA chr11 72789070 CTTxTGT C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582854 0.58293 0.999869 60 0 0 8.064306 0.153846 0.02 -0.227993 22 4 639 110 60 60 0 0 CC 6.317361 21 0 600 0 KEEP + Atp2a3 NO AID_1 chr11 73701694 73701694 A C exonic Olfr394 nonsynonymous SNV NM_147007:c.T179G:p.F60C exonic Olfr394 nonsynonymous SNV uc007kbe.1:c.T179G:p.F60C exonic ENSMUSG00000056921 nonsynonymous SNV ENSMUST00000071478:c.T179G:p.F60C 11qB4 NA NA chr11 73701694 AGAxACA A C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 304 0 0 191.048449 0.548387 0.02 2.697001 56 68 1586 1957 60 60 0 0 AA 36.996608 123 0 3425 0 KEEP - Olfr394 NO AID_1 chr11 74978865 74978865 C A UTR3 Hic1 NA NA UTR3 Hic1 NA NA UTR3 ENSMUSG00000043099 NA NA 11qB5 NA NA chr11 74978865 CACxTAG C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 146 0 0 47.409549 0.322581 0.02 1.15153 42 20 1222 548 60 60 0 0 CC 18.045297 60 0 1653 0 KEEP - Hic1 NO AID_1 chr11 74979767 74979767 G A exonic Hic1 synonymous SNV NM_001098203:c.C1317T:p.C439C exonic Hic1 synonymous SNV uc007kdc.1:c.C1317T:p.C439C exonic ENSMUSG00000043099 synonymous SNV ENSMUST00000055619:c.C1797T:p.C599C 11qB5 NA NA chr11 74979767 GATxCAC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 228 0 0 78.522689 0.346939 0.02 0.738404 64 34 1846 898 60 60 0 0 GG 30.043865 100 0 2742 0 KEEP - Hic1 YES AID_1 chr11 79990694 79990694 C G exonic Adap2 nonsynonymous SNV NM_172133:c.C1029G:p.C343W exonic Adap2 nonsynonymous SNV uc007klk.1:c.C1029G:p.C343W exonic ENSMUSG00000020709 nonsynonymous SNV ENSMUST00000021050:c.C1029G:p.C343W 11qB5 NA NA chr11 79990694 CTGxCCC C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 133 1 0 27.490593 0.210526 0.02 1.293733 45 12 1279 345 60 60 0 0 CC 16.240092 54 0 1491 0 KEEP - Adap2 NO AID_1 chr11 86397659 86397659 C T ncRNA_exonic Mir21 NA NA ncRNA_exonic Mir21 NA NA ncRNA_exonic ENSMUSG00000065455 NA NA 11qC NA NA chr11 86397659 GTAxAGC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 63 0 0 13.56495 0.272727 0.02 -0.192924 16 6 457 163 60 60 0 0 CC 10.226727 34 0 948 0 KEEP - Mir21 YES AID_1 chr11 86397661 86397661 G A UTR3 Vmp1 NA NA UTR3 Tmem49 NA NA UTR3 ENSMUSG00000018171 NA NA 11qC NA NA chr11 86397661 ACAxCCA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 63 0 0 14.264828 0.272727 0.02 -0.192945 16 6 471 170 60 60 0 0 GG 10.226517 34 0 951 0 KEEP - Vmp1 YES AID_1 chr11 86397690 86397690 G A UTR3 Vmp1 NA NA UTR3 Tmem49 NA NA UTR3 ENSMUSG00000018171 NA NA 11qC NA NA chr11 86397690 GGGxCAA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 77 0 0 10.669679 0.185185 0.02 -0.244816 22 5 629 139 60 60 0 0 GG 9.86092 33 0 872 0 KEEP - Vmp1 YES AID_1 chr11 86397694 86397694 G A UTR3 Vmp1 NA NA UTR3 Tmem49 NA NA UTR3 ENSMUSG00000018171 NA NA 11qC NA NA chr11 86397694 CAAxCAC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 77 0 0 10.569622 0.185185 0.02 -0.245538 22 5 640 138 60 60 0 0 GG 10.225217 34 0 943 0 KEEP - Vmp1 YES AID_1 chr11 86397695 86397695 C G UTR3 Vmp1 NA NA UTR3 Tmem49 NA NA UTR3 ENSMUSG00000018171 NA NA 11qC NA NA chr11 86397695 AAGxACG C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 78 0 0 20.091818 0.296296 0.02 -0.245313 19 8 552 234 60 60 0 0 CC 10.518685 35 0 961 0 KEEP - Vmp1 NO AID_1 chr11 86397710 86397710 C A UTR3 Vmp1 NA NA UTR3 Tmem49 NA NA UTR3 ENSMUSG00000018171 NA NA 11qC NA NA chr11 86397710 AGGxAGG C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 63 0 0 17.563773 0.318182 0.02 -0.201706 15 7 435 202 60 60 0 0 CC 9.003736 30 0 827 0 KEEP - Vmp1 NO AID_1 chr11 86398831 86398831 G A exonic Vmp1 synonymous SNV NM_029478:c.C1200T:p.N400N exonic Tmem49 synonymous SNV uc007ksv.1:c.C1200T:p.N400N exonic ENSMUSG00000018171 synonymous SNV ENSMUST00000018315:c.C1200T:p.N400N 11qC "Score=0.912605;Name=No.15454,chr5:30157519" NA chr11 86398831 TGAxTTC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 111 0 0 27.829534 0.272727 0.02 -0.38588 32 12 941 333 60 60 0 0 GG 15.943192 53 0 1508 0 KEEP - Vmp1 YES AID_1 chr11 86398974 86398974 C T intronic Vmp1 NA NA intronic Tmem49 NA NA intronic ENSMUSG00000018171 NA NA 11qC NA NA chr11 86398974 GAAxAAT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 107 1 0 21.42215 0.222222 0.02 -0.394649 35 10 1034 270 60 60 0 0 CC 13.837513 46 0 1310 0 KEEP - Vmp1 YES AID_1 chr11 86400031 86400031 C T exonic Vmp1 synonymous SNV NM_029478:c.G1044A:p.K348K exonic Tmem49 synonymous SNV uc007ksv.1:c.G1044A:p.K348K exonic ENSMUSG00000018171 synonymous SNV ENSMUST00000018315:c.G1044A:p.K348K 11qC NA NA chr11 86400031 AAGxTTC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 108 2 0 35.673318 0.411765 0.02 -0.298162 20 14 574 390 60 60 0 0 CC 14.711171 49 0 1347 0 KEEP - Vmp1 YES AID_1 chr12 35087642 35087642 G C exonic Hdac9 nonsynonymous SNV NM_024124:c.C878G:p.A293G exonic Hdac9 nonsynonymous SNV uc007njb.1:c.C746G:p.A249G exonic ENSMUSG00000004698 nonsynonymous SNV ENSMUST00000073838:c.C746G:p.A249G 12qA3 NA NA chr12 35087642 AGAxCTG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 1 64 0 0 34.844574 0.666667 0.02 -0.157861 6 12 183 341 60 60 0 0 GG 11.09807 37 0 1016 0 KEEP - Hdac9 NO AID_1 chr13 108838419 108838419 A G UTR3 Smim15 NA NA UTR3 2810008M24Rik NA NA UTR3 ENSMUSG00000071180 NA NA 13qD2.1 NA NA chr13 108838419 GACxCTC A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 164 2 0 18.843179 0.166667 0.02 1.07132 50 10 1375 258 60 60 0 0 AA 21.948809 73 0 1949 0 KEEP + Smim15 NO AID_1 chr13 113524346 113524346 C A UTR3 Slc38a9 NA NA UTR3 Slc38a9 NA NA UTR3 ENSMUSG00000069056 NA NA 13qD2.2 NA NA chr13 113524346 TAAxTTA C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 74 0 0 7.838868 0.129032 0.02 -0.271443 27 4 761 111 60 60 0 0 CC 9.024046 30 0 845 0 KEEP + Slc38a9 NO AID_1 chr13 21871894 21871894 G A exonic Hist1h1b nonsynonymous SNV NM_020034:c.C530T:p.A177V exonic Hist1h1b nonsynonymous SNV uc007pri.1:c.C530T:p.A177V exonic ENSMUSG00000058773 nonsynonymous SNV ENSMUST00000080511:c.C530T:p.A177V 13qA3.1 NA NA chr13 21871894 GCAxCAG G A 1-AID-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.552883 0.552887 0.999992 74 0 0 8.339142 0.16 0.02 -0.219091 21 4 589 112 60 60 0 0 GG 12.306047 41 0 1136 0 KEEP - Hist1h1b YES AID_1 chr13 22132903 22132903 G A exonic Hist1h4i nonsynonymous SNV NM_175656:c.C290T:p.T97I exonic Hist1h4i nonsynonymous SNV uc007psc.1:c.C290T:p.T97I exonic ENSMUSG00000060639 nonsynonymous SNV ENSMUST00000102977:c.C290T:p.T97I 13qA3.1 NA NA chr13 22132903 AGAxTAC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 88 0 0 23.89563 0.27027 0.02 -0.342039 27 10 796 285 60 60 0 0 GG 12.62966 42 0 1179 0 KEEP - Hist1h4i YES AID_1 chr13 22132906 22132906 C A exonic Hist1h4i nonsynonymous SNV NM_175656:c.G287T:p.R96L exonic Hist1h4i nonsynonymous SNV uc007psc.1:c.G287T:p.R96L exonic ENSMUSG00000060639 nonsynonymous SNV ENSMUST00000102977:c.G287T:p.R96L 13qA3.1 NA NA chr13 22132906 GTAxGGC C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 92 0 0 21.281816 0.243243 0.02 -0.341432 28 9 773 259 60 60 0 0 CC 13.227357 44 0 1147 0 KEEP - Hist1h4i NO AID_1 chr13 23636903 23636903 G A UTR3 Hist1h3f NA NA UTR3 Hist1h3f NA NA UTR3 ENSMUSG00000059309 NA NA 13qA3.1 "Score=0.973684;Name=No.32697,chr13:23652443" NA chr13 23636903 TGAxCAC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 127 1 25 22.481431 0.243902 0.02 -0.359543 31 10 907 276 60 60 0 0 GG 19.552942 65 0 1846 0 KEEP + Hist1h3f YES AID_1 chr13 23636904 23636904 C T UTR3 Hist1h3f NA NA UTR3 Hist1h3f NA NA UTR3 ENSMUSG00000059309 NA NA 13qA3.1 "Score=0.973684;Name=No.32697,chr13:23652443" NA chr13 23636904 GAGxACC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 127 1 25 21.881752 0.243902 0.02 -0.359534 31 10 884 270 60 60 0 0 CC 19.246726 64 0 1753 0 KEEP + Hist1h3f YES AID_1 chr13 23665878 23665878 C T exonic Hist1h2bf nonsynonymous SNV NM_178195:c.G182A:p.G61D exonic Hist1h2bf nonsynonymous SNV uc007puf.1:c.G182A:p.G61D exonic ENSMUSG00000069268 nonsynonymous SNV ENSMUST00000105106:c.G182A:p.G61D 13qA3.1 "Score=0.928571;Name=No.32663,chr13:21924949,No.32661,chr13:21901601" NA chr13 23665878 ATGxCCA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 175 0 11 37.685129 0.285714 0.02 1.204132 40 16 1146 446 60 50 0 0 CC 24.654904 82 0 2221 0 KEEP - Hist1h2bf YES AID_1 chr13 23677508 23677508 C T exonic Hist1h2be synonymous SNV NM_001177653:c.G318A:p.E106E exonic Hist1h2be synonymous SNV uc007pui.2:c.G318A:p.E106E exonic ENSMUSG00000047246 synonymous SNV ENSMUST00000051091:c.G318A:p.E106E 13qA3.1 NA NA chr13 23677508 CAGxTCC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999999 79 0 4 13.464556 0.230769 0.02 -0.228015 20 6 582 167 60 60 0 0 CC 10.806191 36 0 970 0 KEEP - Hist1h2be YES AID_1 chr13 23714074 23714074 C T exonic Hist1h1e nonsynonymous SNV NM_015787:c.G293A:p.G98D exonic Hist1h1e nonsynonymous SNV uc007puj.2:c.G293A:p.G98D exonic ENSMUSG00000051627 nonsynonymous SNV ENSMUST00000062045:c.G293A:p.G98D 13qA3.1 NA NA chr13 23714074 GTGxCCT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162114 0.162467 0.997832 35 0 1 15.664829 0.461538 0.02 -0.113997 7 6 195 167 60 60 0 0 CC 4.812403 16 0 442 0 KEEP - Hist1h1e YES AID_1 chr13 23838811 23838811 C A exonic Hist1h2bb nonsynonymous SNV NM_175664:c.C148A:p.H50N exonic Hist1h2bb nonsynonymous SNV uc007pus.1:c.C148A:p.H50N exonic ENSMUSG00000075031 nonsynonymous SNV ENSMUST00000099703:c.C148A:p.H50N 13qA3.1 NA NA chr13 23838811 GTGxACC C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 111 0 10 15.249364 0.189189 0.02 -0.37708 30 7 849 197 60 60 0 0 CC 15.321559 51 0 1400 0 KEEP + Hist1h2bb NO AID_1 chr13 41860153 41860153 C T exonic Adtrp nonsynonymous SNV NM_001145875:c.G667A:p.A223T exonic 9530008L14Rik nonsynonymous SNV uc007qfh.1:c.G763A:p.A255T exonic ENSMUSG00000058022 nonsynonymous SNV ENSMUST00000072012:c.G763A:p.A255T 13qA4 NA NA chr13 41860153 TTGxTAT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 158 1 0 33.13203 0.254545 0.02 1.311176 41 14 1194 400 60 60 0 0 CC 18.349369 61 0 1727 0 KEEP - Adtrp YES AID_1 chr13 46784536 46784536 G C exonic Nup153 nonsynonymous SNV NM_175749:c.C2524G:p.P842A exonic Nup153 nonsynonymous SNV uc007qhj.2:c.C2524G:p.P842A exonic ENSMUSG00000021374 nonsynonymous SNV ENSMUST00000021803:c.C2524G:p.P842A 13qA5 NA NA chr13 46784536 CGGxCTT G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161432 0.162467 0.993634 29 0 0 10.023884 0.307692 0.02 -0.114009 9 4 258 116 60 60 0 0 GG 3.608854 12 0 325 0 KEEP - Nup153 NO AID_1 chr13 46894678 46894678 C T exonic Kif13a nonsynonymous SNV NM_010617:c.G2188A:p.A730T exonic Kif13a nonsynonymous SNV uc007qhn.1:c.G2188A:p.A730T exonic ENSMUSG00000021375 nonsynonymous SNV ENSMUST00000056978:c.G2188A:p.A730T 13qA5 NA NA chr13 46894678 TGGxGGG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 85 0 0 47.25723 0.5625 0.02 -0.289234 14 18 352 482 60 60 0 0 CC 11.721139 39 0 993 0 KEEP - Kif13a YES AID_1 chr13 50342327 50342327 A G exonic Gm906 nonsynonymous SNV NM_001033438:c.T1331C:p.L444P exonic Gm906 nonsynonymous SNV uc007qka.1:c.T1331C:p.L444P exonic ENSMUSG00000074904 nonsynonymous SNV ENSMUST00000099521:c.T1331C:p.L444P 13qA5 "Score=0.980643;Name=No.32831,chr13:50757826" NA chr13 50342327 ACAxGCA A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582905 0.58293 0.999957 71 0 4 20.247981 0.307692 0.02 -0.228013 18 8 512 234 60 60 0 0 AA 8.716985 29 0 796 0 KEEP - Gm906 NO AID_1 chr13 54148576 54148576 A T exonic Drd1a synonymous SNV NM_010076:c.T987A:p.I329I exonic Drd1a synonymous SNV uc011yzm.1:c.T987A:p.I329I exonic ENSMUSG00000021478 synonymous SNV ENSMUST00000021932:c.T987A:p.I329I 13qB1 NA NA chr13 54148576 AATxATG A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 62 0 0 10.966666 0.227273 0.02 -0.192906 17 5 467 137 60 60 0 0 AA 9.922414 33 0 885 0 KEEP - Drd1a NO AID_1 chr13 54569995 54569995 C T exonic Thoc3 synonymous SNV NM_028597:c.G174A:p.V58V exonic Thoc3 synonymous SNV uc007qod.2:c.G174A:p.V58V exonic ENSMUSG00000025872 synonymous SNV ENSMUST00000026990:c.G174A:p.V58V 13qB1 NA NA chr13 54569995 GTGxACC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 48 1 0 6.373385 0.2 0.02 -0.131507 12 3 333 82 60 60 0 0 CC 8.696626 29 0 791 0 KEEP - Thoc3 YES AID_1 chr13 54723287 54723287 G A intronic Faf2 NA NA intronic "Faf2,mKIAA0887" NA NA exonic ENSMUSG00000025873 nonsynonymous SNV ENSMUST00000135015:c.G86A:p.S29N 13qB1 NA NA chr13 54723287 GCAxCCC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999999 69 0 0 34.566734 0.466667 0.02 -0.262999 16 14 461 369 60 60 0 0 GG 10.526196 35 0 957 0 KEEP + Faf2 YES AID_1 chr13 55430963 55430963 C T exonic Mxd3 synonymous SNV NM_016662:c.G66A:p.E22E exonic Mxd3 synonymous SNV uc007qqn.1:c.G66A:p.E22E exonic ENSMUSG00000021485 synonymous SNV ENSMUST00000021941:c.G66A:p.E22E 13qB1 NA NA chr13 55430963 TCTxTCG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 106 1 0 19.620777 0.2 0.02 -0.403223 36 9 1037 251 60 60 0 0 CC 13.489822 45 0 1248 0 KEEP - Mxd3 YES AID_1 chr13 65442490 65442490 A G intergenic "Zfp369(dist=43387),Gm10324(dist=771899)" NA NA intergenic "Zfp369(dist=43387),AK145544(dist=57800)" NA NA intergenic "ENSMUSG00000021514(dist=36961),ENSMUSG00000090514(dist=38211)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442490 ACCxTGT A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 238 19 29 11.813905 0.08642 0.02 0.800171 74 7 2000 188 60 20 0 0 AA 30.674498 102 0 2747 0 KEEP NA Zfp369 NO AID_1 chr13 65442544 65442544 C A intergenic "Zfp369(dist=43441),Gm10324(dist=771845)" NA NA intergenic "Zfp369(dist=43441),AK145544(dist=57746)" NA NA intergenic "ENSMUSG00000021514(dist=37015),ENSMUSG00000090514(dist=38157)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442544 AACxTTT C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 171 17 46 12.846008 0.127273 0.02 1.071279 48 7 1395 186 60 20 0 0 CC 20.154559 67 0 1920 0 KEEP NA Zfp369 NO AID_1 chr13 65611713 65611713 T C intergenic "Zfp369(dist=212610),Gm10324(dist=602676)" NA NA ncRNA_intronic AK145544 NA NA intergenic "ENSMUSG00000090514(dist=58049),ENSMUSG00000063905(dist=1901)" NA NA 13qB3 "Score=0.976682;Name=No.33504,chr13:65690476" NA chr13 65611713 TCAxGTG T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 253 3 55 10.086341 0.1 0.02 0.983608 63 7 1740 166 43 43 0 0 TT 27.654913 92 0 2452 0 KEEP - Zfp369 NO AID_1 chr13 66542024 66542024 C T UTR5 2410141K09Rik NA NA ncRNA_exonic AK010804 NA NA UTR5 ENSMUSG00000074832 NA NA 13qB3 "Score=0.975838;Name=No.33715,chr13:65695984" NA chr13 66542024 ACAxAGA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.982687 0.989542 0.993072 154 3 55 10.260606 0.098361 0.02 1.062533 55 6 1564 159 46 23 0 0 CC 7.21194 24 0 668 0 KEEP - 2410141K09Rik YES AID_1 chr14 20420773 20420773 T A exonic Gm5458 nonsynonymous SNV NM_001024706:c.A236T:p.D79V exonic Gm5458 nonsynonymous SNV uc011zgi.1:c.A236T:p.D79V exonic ENSMUSG00000071574 nonsynonymous SNV ENSMUST00000096121:c.A236T:p.D79V 14qA3 "Score=0.986572;Name=No.49681,chr14:7155478" NA chr14 20420773 ATGxCAT T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1816 223 698 279.223793 0.279621 0.02 10.630837 304 118 8531 3315 46 46 0 0 TT 212.934432 708 0 19576 0 KEEP - Gm5458 NO AID_1 chr14 21515351 21515351 C T exonic Fut11 synonymous SNV NM_028428:c.C1038T:p.Y346Y exonic Fut11 synonymous SNV uc007skk.1:c.C1038T:p.Y346Y exonic ENSMUSG00000039357 synonymous SNV ENSMUST00000048016:c.C1038T:p.Y346Y 14qA3 NA NA chr14 21515351 ATAxCTG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 180 0 0 41.320834 0.285714 0.02 1.142786 45 18 1266 491 60 60 0 0 CC 24.642432 82 0 2230 0 KEEP - Fut11 YES AID_1 chr14 21656273 21656273 C A UTR5 Plau NA NA UTR5 Plau NA NA UTR5 ENSMUSG00000021822 NA NA 14qA3 NA NA chr14 21656273 GAAxTGC C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 196 0 0 55.413764 0.298701 0.02 1.110994 54 23 1473 648 60 60 0 0 CC 24.641274 82 0 2202 0 KEEP + Plau NO AID_1 chr14 21656276 21656276 C A UTR5 Plau NA NA UTR5 Plau NA NA UTR5 ENSMUSG00000021822 NA NA 14qA3 NA NA chr14 21656276 CTGxTGT C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 205 0 0 58.113782 0.303797 0.02 1.09337 55 24 1528 677 60 60 0 0 CC 25.562381 85 0 2328 0 KEEP + Plau NO AID_1 chr14 22804390 22804390 C T exonic Zfp503 nonsynonymous SNV NM_145459:c.G1679A:p.G560D exonic Zfp503 nonsynonymous SNV uc007slv.1:c.G1679A:p.G560D exonic ENSMUSG00000039081 nonsynonymous SNV ENSMUST00000043409:c.G1679A:p.G560D 14qA3 NA NA chr14 22804390 TAGxCCG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 101 0 0 17.703251 0.242424 0.02 -0.295733 25 8 671 218 60 60 0 0 CC 16.519824 55 0 1495 0 KEEP - Zfp503 YES AID_1 chr14 22806503 22806503 G A exonic Zfp503 synonymous SNV NM_145459:c.C253T:p.L85L exonic Zfp503 synonymous SNV uc007slv.1:c.C253T:p.L85L exonic ENSMUSG00000039081 synonymous SNV ENSMUST00000112440:c.C253T:p.L85L 14qA3 NA NA chr14 22806503 TCAxCAT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 84 0 0 21.393343 0.310345 0.02 -0.262535 20 9 578 249 60 60 0 0 GG 11.413724 38 0 1030 0 KEEP - Zfp503 YES AID_1 chr14 67858315 67858315 G A exonic Ebf2 nonsynonymous SNV NM_001276387:c.G469A:p.E157K exonic Ebf2 nonsynonymous SNV uc007ukx.1:c.G469A:p.E157K exonic ENSMUSG00000022053 nonsynonymous SNV ENSMUST00000022637:c.G469A:p.E157K 14qD1 NA NA chr14 67858315 CACxAGG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 130 0 0 133.723494 1 0.02 -0.359468 0 41 0 1142 0 60 0 0 GG 18.039657 60 0 1622 0 KEEP + Ebf2 YES AID_1 chr15 11171335 11171335 A T intronic Adamts12 NA NA intronic Adamts12 NA NA intronic ENSMUSG00000047497 NA NA 15qA1 NA NA chr15 11171335 CCAxGTT A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552812 0.552887 0.999863 55 0 0 16.10273 0.28 0.02 -0.219227 18 7 510 192 60 60 0 0 AA 6.016296 20 0 567 0 KEEP + Adamts12 NO AID_1 chr15 61817492 61817492 G A exonic Myc nonsynonymous SNV NM_001177353:c.G16A:p.A6T exonic Myc nonsynonymous SNV uc007vyg.1:c.G13A:p.A5T exonic ENSMUSG00000022346 nonsynonymous SNV ENSMUST00000022971:c.G16A:p.A6T 15qD1 NA NA chr15 61817492 TGGxCGT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 462 3 0 95.153747 0.218274 0.02 3.448619 154 43 4408 1195 60 60 0 0 GG 50.219382 167 0 4569 0 KEEP + Myc YES AID_1 chr15 61817521 61817521 G A intronic Myc NA NA intronic Myc NA NA intronic ENSMUSG00000022346 NA NA 15qD1 NA NA chr15 61817521 TCTxGTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 430 3 0 92.431345 0.213542 0.02 3.687959 151 41 4435 1161 60 60 0 0 GG 44.210618 147 0 4129 0 KEEP + Myc YES AID_1 chr15 73354615 73354615 T C exonic Dennd3 nonsynonymous SNV NM_001081066:c.T542C:p.V181A exonic Dennd3 nonsynonymous SNV uc007wce.1:c.T542C:p.V181A exonic ENSMUSG00000036661 nonsynonymous SNV ENSMUST00000043414:c.T542C:p.V181A 15qD3 NA NA chr15 73354615 GCGxGAT T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.91817 0.918171 0.999999 92 0 0 19.540723 0.227273 0.02 -0.385379 34 10 937 250 60 60 0 0 TT 10.826695 36 0 976 0 KEEP + Dennd3 NO AID_1 chr15 76007041 76007041 A C exonic Plec nonsynonymous SNV NM_011117:c.T9278G:p.I3093S exonic Plec nonsynonymous SNV uc007wir.2:c.T9191G:p.I3064S exonic ENSMUSG00000022565 nonsynonymous SNV ENSMUST00000023226:c.T9191G:p.I3064S 15qD3 NA NA chr15 76007041 TCGxTGA A C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 56 1 0 13.854242 0.214286 0.02 -0.244977 22 6 557 173 60 60 0 0 AA 7.215195 24 0 643 0 KEEP - Plec NO AID_1 chr15 76023928 76023928 G A intronic Plec NA NA intronic Plec NA NA intronic ENSMUSG00000022565 NA NA 15qD3 NA NA chr15 76023928 GAGxCAA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 158 0 0 41.07309 0.268657 0.02 1.108522 49 18 1335 494 60 60 0 0 GG 21.335665 71 0 1885 0 KEEP - Plec YES AID_1 chr15 99649930 99649930 T C exonic Lima1 nonsynonymous SNV NM_023063:c.A145G:p.T49A exonic Lima1 nonsynonymous SNV uc007xqh.2:c.A145G:p.T49A exonic ENSMUSG00000023022 nonsynonymous SNV ENSMUST00000109024:c.A145G:p.T49A 15qF1 NA NA chr15 99649930 TGGxTTG T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 175 0 0 50.093538 0.269231 0.02 1.109651 57 21 1557 598 60 60 0 0 TT 21.313729 71 0 1888 0 KEEP - Lima1 NO AID_1 chr16 16303543 16303543 A C exonic Yars2 nonsynonymous SNV NM_198246:c.A467C:p.D156A exonic Yars2 nonsynonymous SNV uc007yie.1:c.A467C:p.D156A exonic ENSMUSG00000022792 nonsynonymous SNV ENSMUST00000059955:c.A467C:p.D156A 16qA2 NA NA chr16 16303543 CGGxCGG A C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 44 0 0 18.68187 0.411765 0.02 -0.147722 10 7 256 203 60 60 0 0 AA 6.915638 23 0 608 0 KEEP + Yars2 NO AID_1 chr16 20501556 20501556 A G exonic Eif2b5 nonsynonymous SNV NM_172265:c.A428G:p.D143G exonic Eif2b5 nonsynonymous SNV uc007ypu.2:c.A428G:p.D143G exonic ENSMUSG00000003235 nonsynonymous SNV ENSMUST00000003320:c.A428G:p.D143G 16qA3 NA NA chr16 20501556 CTGxCTT A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 82 0 0 40.664266 0.410256 0.02 -0.341889 23 16 630 445 60 60 0 0 AA 9.623977 32 0 870 0 KEEP + Eif2b5 NO AID_1 chr16 20552374 20552374 T G exonic Abcf3 nonsynonymous SNV NM_013852:c.T1156G:p.F386V exonic Abcf3 nonsynonymous SNV uc007ypz.1:c.T1156G:p.F386V exonic ENSMUSG00000003234 nonsynonymous SNV ENSMUST00000003319:c.T1156G:p.F386V 16qA3 NA NA chr16 20552374 AACxTCC T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 245 2 0 73.322939 0.370787 0.02 0.90658 56 33 1598 831 60 60 0 0 TT 32.182109 107 0 2955 0 KEEP + Abcf3 NO AID_1 chr16 22894395 22894395 C T intronic Ahsg NA NA ncRNA_exonic AK149453 NA NA intronic ENSMUSG00000022868 NA NA 16qB1 NA NA chr16 22894395 CCAxAGC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999997 105 6 0 18.91899 0.2 0.02 -0.402033 36 9 1043 244 60 60 0 0 CC 9.624479 32 0 881 0 KEEP - Ahsg YES AID_1 chr16 30066266 30066266 G A exonic Hes1 synonymous SNV NM_008235:c.G222A:p.K74K exonic Hes1 synonymous SNV uc007ywl.1:c.G222A:p.K74K exonic ENSMUSG00000022528 synonymous SNV ENSMUST00000023171:c.G222A:p.K74K 16qB2 NA NA chr16 30066266 CAAxCTA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612352 0.612407 0.999909 65 0 0 13.253356 0.222222 0.02 -0.236781 21 6 605 166 60 60 0 0 GG 7.21935 24 0 678 0 KEEP + Hes1 YES AID_1 chr16 30066980 30066980 C T exonic Hes1 synonymous SNV NM_008235:c.C315T:p.S105S exonic Hes1 synonymous SNV uc007ywl.1:c.C315T:p.S105S exonic ENSMUSG00000022528 synonymous SNV ENSMUST00000023171:c.C315T:p.S105S 16qB2 NA NA chr16 30066980 GAGxGTG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 137 5 0 16.217432 0.173913 0.02 -0.409715 38 8 985 216 60 60 0 0 CC 18.614306 62 0 1565 0 KEEP + Hes1 YES AID_1 chr16 49922993 49922993 A T intergenic "Cd47(dist=11197),Gm6936(dist=57580)" NA NA intergenic "AK018679(dist=7872),AK135986(dist=27768)" NA NA intergenic "ENSMUSG00000055447(dist=7870),ENSMUSG00000022641(dist=268964)" NA NA 16qB5 NA NA chr16 49922993 AGAxTTC A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 99 0 0 37.521843 0.32 0.02 -0.438423 34 16 949 435 60 60 0 0 AA 11.727349 39 0 1052 0 KEEP NA Cd47 NO AID_1 chr16 52047566 52047566 A T intronic Cblb NA NA exonic Cblb stoploss SNV uc007zld.1:c.A423T:p.X141C intronic ENSMUSG00000022637 NA NA 16qB5 NA NA chr16 52047566 GTGxGCA A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 158 2 0 15.896698 0.133333 0.02 1.16084 52 8 1455 223 60 60 0 0 AA 18.348401 61 0 1706 0 KEEP + Cblb NO AID_1 chr16 55819111 55819111 G A exonic Nfkbiz synonymous SNV NM_001159394:c.C451T:p.L151L exonic Nfkbiz synonymous SNV uc007zlm.2:c.C451T:p.L151L exonic ENSMUSG00000035356 synonymous SNV ENSMUST00000114458:c.C451T:p.L151L 16qC1.1 NA NA chr16 55819111 TCAxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 126 4 0 35.719671 0.333333 0.02 1.248608 30 15 835 410 70 60 0 0 GG 16.83041 56 0 1526 0 KEEP - Nfkbiz YES AID_1 chr16 60526298 60526298 A T exonic Epha6 nonsynonymous SNV NM_007938:c.T427A:p.W143R exonic Epha6 nonsynonymous SNV uc007zpo.1:c.T427A:p.W143R exonic ENSMUSG00000055540 nonsynonymous SNV ENSMUST00000068860:c.T427A:p.W143R 16qC1.3 NA NA chr16 60526298 TCCxTCC A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760787 0.760887 0.999869 70 2 0 24.781193 0.30303 0.02 -0.28938 23 10 637 288 60 60 0 0 AA 6.315912 21 0 573 0 KEEP - Epha6 NO AID_1 chr17 10511652 10511652 G A exonic Qk synonymous SNV NM_001159516:c.C87T:p.S29S exonic Qk synonymous SNV uc008akb.2:c.C87T:p.S29S exonic ENSMUSG00000062078 synonymous SNV ENSMUST00000042296:c.C87T:p.S29S 17qA1 NA NA chr17 10511652 GCTxCTC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 43 2 0 8.681294 0.235294 0.02 -0.157858 13 4 385 108 60 60 0 0 GG 4.813218 16 0 457 0 KEEP - Qk YES AID_1 chr17 12256002 12256002 C T UTR3 Park2 NA NA UTR3 Park2 NA NA intergenic "ENSMUSG00000023826(dist=1483),ENSMUSG00000023827(dist=55568)" NA NA 17qA1 NA NA chr17 12256002 ATTxTTA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 147 0 0 37.536651 0.253968 0.02 1.14295 47 16 1366 454 60 60 0 0 CC 20.447574 68 0 1944 0 KEEP + Park2 YES AID_1 chr17 15158986 15158986 G A exonic Gm3435 synonymous SNV NM_001123372:c.G1167A:p.Q389Q exonic Gm3435 synonymous SNV uc008anx.2:c.G459A:p.Q153Q exonic ENSMUSG00000073455 synonymous SNV ENSMUST00000061688:c.G1167A:p.Q389Q 17qA2 "Score=0.998852;Name=No.65415,chr17:15120181" NA chr17 15158986 CCAxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 323 3 26 17.564209 0.08 0.02 2.286479 115 10 3304 279 60 46 0 0 GG 39.791187 135 1 3770 7 KEEP + Gm3435 YES AID_1 chr17 23496748 23496748 T A exonic Vmn2r115 nonsynonymous SNV NM_001104579:c.T2227A:p.S743T exonic Vmn2r115 nonsynonymous SNV uc009vbs.1:c.T2227A:p.S743T exonic ENSMUSG00000091076 nonsynonymous SNV ENSMUST00000168175:c.T2227A:p.S743T 17qA3.3 "Score=0.924606;Name=No.65595,chr17:23572303" NA chr17 23496748 GGTxCAG T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 521 4 14 61.996348 0.147465 0.02 4.341167 185 32 5141 861 60 60 0 0 TT 70.682505 235 0 6518 0 KEEP + Vmn2r115 NO AID_1 chr17 23608237 23608237 C G exonic Vmn2r117 nonsynonymous SNV NM_001104581:c.G1561C:p.G521R exonic Vmn2r117 nonsynonymous SNV uc009vbu.1:c.G1561C:p.G521R exonic ENSMUSG00000091407 nonsynonymous SNV ENSMUST00000171996:c.G1561C:p.G521R 17qA3.3 "Score=0.971132;Name=No.65604,chr17:23582224" NA chr17 23608237 GACxACA C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 852 39 39 41.562891 0.088028 0.02 8.119606 259 25 7591 663 60 46 0 0 CC 96.532912 321 0 9137 0 KEEP - Vmn2r117 NO AID_1 chr17 30837374 30837374 A C exonic Dnah8 synonymous SNV NM_013811:c.A3375C:p.I1125I exonic Dnahc8 synonymous SNV uc008bua.1:c.A3375C:p.I1125I exonic ENSMUSG00000033826 synonymous SNV ENSMUST00000035963:c.A3375C:p.I1125I 17qA3.3 NA NA chr17 30837374 CATxAAA A C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 183 2 0 8.813165 0.05814 0.02 1.039372 81 5 2278 147 60 60 0 0 AA 18.347272 61 0 1687 0 KEEP + Dnah8 NO AID_1 chr17 46395926 46395926 A G exonic Tjap1 synonymous SNV NM_001252475:c.T1056C:p.S352S exonic Tjap1 synonymous SNV uc008csg.1:c.T1056C:p.S352S exonic ENSMUSG00000012296 synonymous SNV ENSMUST00000012440:c.T1056C:p.S352S 17qC NA NA chr17 46395926 CTCxCTG A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 54 0 0 8.570142 0.190476 0.02 -0.184139 17 4 467 111 60 60 0 0 AA 7.50295 25 0 648 0 KEEP - Tjap1 NO AID_1 chr17 56717227 56717227 T C intronic Safb2 NA NA intronic Safb2 NA NA intronic ENSMUSG00000042625 NA NA 17qD NA NA chr17 56717227 GTGxCTC T C 1-AID-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.973965 0.973965 1 132 0 0 14.462795 0.132075 0.02 1.320049 46 7 1259 201 60 60 0 0 TT 16.240558 54 0 1469 0 KEEP - Safb2 NO AID_1 chr17 58547155 58547155 C A exonic Cntnap5c synonymous SNV NM_001081653:c.C3714A:p.V1238V exonic Cntnap5c synonymous SNV uc008dew.1:c.C3714A:p.V1238V exonic ENSMUSG00000038048 synonymous SNV ENSMUST00000076038:c.C3714A:p.V1238V 17qD NA NA chr17 58547155 AGTxATT C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.45615 0.457757 0.99649 48 0 0 13.2666 0.272727 0.02 -0.192806 16 6 451 160 60 70 0 0 CC 4.496947 15 0 413 0 KEEP + Cntnap5c NO AID_1 chr17 7932025 7932025 C T UTR3 Fndc1 NA NA UTR3 Fndc1 NA NA UTR3 ENSMUSG00000071984 NA NA 17qA1 NA NA chr17 7932025 TAGxGCA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 43 0 0 18.137743 0.466667 0.02 -0.140289 8 7 219 193 60 60 0 0 CC 6.312512 21 0 547 0 KEEP - Fndc1 YES AID_1 chr17 84586014 84586014 G A exonic Zfp36l2 synonymous SNV NM_001001806:c.C534T:p.F178F exonic Zfp36l2 synonymous SNV uc008dsq.1:c.C534T:p.F178F exonic ENSMUSG00000045817 synonymous SNV ENSMUST00000169458:c.C447T:p.F149F 17qE4 NA NA chr17 84586014 CGCxAAC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 163 0 0 42.771111 0.290323 0.02 1.249977 44 18 1184 504 60 60 0 0 GG 21.940323 73 0 1892 0 KEEP - Zfp36l2 YES AID_1 chr17 84815697 84815697 G A exonic Thada nonsynonymous SNV NM_183021:c.C3268T:p.H1090Y exonic Thada nonsynonymous SNV uc008dst.1:c.C922T:p.H308Y exonic ENSMUSG00000024251 nonsynonymous SNV ENSMUST00000047524:c.C3268T:p.H1090Y 17qE4 NA NA chr17 84815697 GGTxTTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 94 4 1 30.05929 0.302326 0.02 -0.37704 30 13 846 353 60 60 0 0 GG 12.027924 40 0 1102 0 KEEP - Thada YES AID_1 chr18 21234922 21234922 G A intronic Mep1b NA NA intronic Mep1b NA NA intronic ENSMUSG00000024313 NA NA 18qA2 NA NA chr18 21234922 CCTxAGC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 41 2 0 7.478446 0.3 0.02 -0.087709 7 3 213 87 60 60 0 0 GG 7.22012 24 0 692 0 KEEP + Mep1b YES AID_1 chr18 35021085 35021085 C T UTR5 Egr1 NA NA UTR5 Egr1 NA NA UTR5 ENSMUSG00000038418 NA NA 18qB1 NA NA chr18 35021085 TAGxTTC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 89 0 0 20.997532 0.272727 0.02 -0.289394 24 9 687 251 60 60 0 0 CC 12.630613 42 0 1139 0 KEEP + Egr1 YES AID_1 chr18 36356848 36356848 G C upstream Nrg2 NA NA upstream Nrg2 NA NA UTR5 ENSMUSG00000060275 NA NA 18qB2 NA NA chr18 36356848 TCAxCCG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120425 0.120436 0.999909 44 0 0 12.151158 0.5 0.02 -0.094862 5 5 146 128 60 60 0 0 GG 7.209939 24 0 661 0 KEEP NA Nrg2 NO AID_1 chr18 75529182 75529182 G A exonic Smad7 synonymous SNV NM_001042660:c.G573A:p.V191V exonic Smad7 synonymous SNV uc008fqd.1:c.G573A:p.V191V exonic ENSMUSG00000025880 synonymous SNV ENSMUST00000026999:c.G573A:p.V191V 18qE3 NA NA chr18 75529182 GGTxTGC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 188 2 0 47.144378 0.291667 0.02 0.966025 51 21 1469 560 60 60 0 0 GG 21.518547 75 1 2081 9 KEEP + Smad7 YES AID_1 chr18 75529191 75529191 C T exonic Smad7 synonymous SNV NM_001042660:c.C582T:p.N194N exonic Smad7 synonymous SNV uc008fqd.1:c.C582T:p.N194N exonic ENSMUSG00000025880 synonymous SNV ENSMUST00000026999:c.C582T:p.N194N 18qE3 NA NA chr18 75529191 CAAxCCC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 196 2 0 22.212017 0.144737 0.02 1.028823 65 11 1830 306 60 60 0 0 CC 22.196782 74 0 1988 0 KEEP + Smad7 YES AID_1 chr19 10993913 10993913 G C exonic Zp1 nonsynonymous SNV NM_009580:c.C251G:p.T84R exonic Zp1 nonsynonymous SNV uc008grh.1:c.C251G:p.T84R exonic ENSMUSG00000024734 nonsynonymous SNV ENSMUST00000025641:c.C251G:p.T84R 19qA NA NA chr19 10993913 ACTxTGT G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 116 0 0 13.031809 0.130435 0.02 -0.403411 40 6 1140 179 60 60 0 0 GG 14.282912 52 1 1453 12 KEEP - Zp1 NO AID_1 chr19 44863359 44863359 G C intronic Pax2 NA NA intronic Pax2 NA NA intronic ENSMUSG00000004231 NA NA 19qC3 NA NA chr19 44863359 AGAxAGC G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260954 0.260965 0.999957 48 2 0 9.835593 0.266667 0.02 -0.131307 11 4 308 117 60 60 0 0 GG 7.821753 26 0 748 0 KEEP + Pax2 NO AID_1 chr19 4802943 4802943 C A exonic Rbm14 nonsynonymous SNV NM_019869:c.G1410T:p.Q470H exonic Rbm14 nonsynonymous SNV uc008gay.1:c.G1410T:p.Q470H exonic ENSMUSG00000006456 nonsynonymous SNV ENSMUST00000006625:c.G1410T:p.Q470H 19qA NA NA chr19 4802943 CAGxTGG C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.99986 46 1 0 9.08129 0.235294 0.02 -0.175397 13 4 381 112 60 60 0 0 CC 5.699517 19 0 514 0 KEEP - Rbm14 NO AID_1 chr19 5052391 5052391 C T exonic Rin1 synonymous SNV NM_145495:c.C927T:p.S309S exonic Rin1 synonymous SNV uc008gca.1:c.C927T:p.S309S exonic ENSMUSG00000024883 synonymous SNV ENSMUST00000025818:c.C927T:p.S309S 19qA NA NA chr19 5052391 CAGxAGC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 127 0 0 19.968408 0.238095 0.02 -0.37626 32 10 915 252 60 60 0 0 CC 19.849509 66 0 1823 0 KEEP + Rin1 YES AID_1 chr19 5068540 5068540 G A exonic Cd248 nonsynonymous SNV NM_054042:c.G415A:p.E139K exonic Cd248 nonsynonymous SNV uc008gcb.1:c.G415A:p.E139K exonic ENSMUSG00000056481 nonsynonymous SNV ENSMUST00000070630:c.G415A:p.E139K 19qA NA NA chr19 5068540 GGAxAGC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 144 0 0 51.193154 0.384615 0.02 1.32872 32 20 938 567 60 60 0 0 GG 25.55096 85 0 2401 0 KEEP + Cd248 YES AID_1 chr19 50752642 50752642 C T exonic Sorcs1 nonsynonymous SNV NM_001252501:c.G317A:p.G106D exonic Sorcs1 nonsynonymous SNV uc008hwa.2:c.G317A:p.G106D exonic ENSMUSG00000043531 nonsynonymous SNV ENSMUST00000076049:c.G317A:p.G106D 19qD1 NA NA chr19 50752642 CGGxCAG C T 1-AID-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.228915 0.229173 0.998875 51 0 0 18.42336 0.5 0.02 -0.131535 7 7 198 193 60 60 0 0 CC 8.420862 28 0 772 0 KEEP - Sorcs1 YES AID_1 chr19 8838610 8838610 T C exonic Nxf1 nonsynonymous SNV NM_001276704:c.T677C:p.L226P exonic Nxf1 nonsynonymous SNV uc008gmr.1:c.T677C:p.L226P exonic ENSMUSG00000010097 nonsynonymous SNV ENSMUST00000010241:c.T677C:p.L226P 19qA NA NA chr19 8838610 CACxTGA T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 267 0 0 74.657598 0.30303 0.02 1.016167 69 30 1950 867 60 60 0 0 TT 34.26146 114 0 3155 0 KEEP + Nxf1 NO AID_1 chr19 9080372 9080372 T A exonic Ahnak nonsynonymous SNV NM_009643:c.T4529A:p.M1510K exonic Ahnak nonsynonymous SNV uc008goj.1:c.T4529A:p.M1510K exonic ENSMUSG00000069833 nonsynonymous SNV ENSMUST00000088050:c.T3734A:p.M1245K 19qA NA NA chr19 9080372 AAAxGCC T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 122 0 0 40.126821 0.347826 0.02 -0.412121 30 16 819 454 60 60 0 0 TT 17.742743 59 0 1584 0 KEEP + Ahnak NO AID_1 chr1 133874283 133874283 C A exonic Slc45a3 nonsynonymous SNV NM_001177628:c.C466A:p.H156N exonic Slc45a3 nonsynonymous SNV uc007cnz.1:c.C466A:p.H156N exonic ENSMUSG00000026435 nonsynonymous SNV ENSMUST00000027695:c.C466A:p.H156N 1qE4 NA NA chr1 133874283 GACxACT C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 213 0 0 29.283124 0.150538 0.02 0.871258 79 14 2241 397 60 60 0 0 CC 26.768307 89 0 2495 0 KEEP + Slc45a3 NO AID_1 chr1 151947366 151947366 G A exonic Ptgs2 nonsynonymous SNV NM_011198:c.G13A:p.A5T exonic Ptgs2 nonsynonymous SNV uc007cxv.1:c.G13A:p.A5T exonic ENSMUSG00000032487 nonsynonymous SNV ENSMUST00000035065:c.G13A:p.A5T 1qG1 NA NA chr1 151947366 CGAxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717285 0.717315 0.999957 72 0 0 30.593616 0.419355 0.02 -0.271123 18 13 534 336 60 60 0 0 GG 7.819536 26 0 718 0 KEEP + Ptgs2 YES AID_1 chr1 156945664 156945664 G A exonic Ier5 synonymous SNV NM_010500:c.C897T:p.S299S exonic Ier5 synonymous SNV uc007dax.2:c.C897T:p.S299S exonic ENSMUSG00000056708 synonymous SNV ENSMUST00000055322:c.C897T:p.S299S 1qG3 NA NA chr1 156945664 GGGxCTC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 109 0 0 12.145107 0.162162 0.02 -0.385829 31 6 889 164 60 60 0 0 GG 15.338447 51 0 1407 0 KEEP - Ier5 YES AID_1 chr1 158231631 158231631 C T intronic Tdrd5 NA NA intronic Tdrd5 NA NA ncRNA_intronic ENSMUSG00000060985 NA NA 1qG3 NA NA chr1 158231631 ATGxTGA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 107 0 0 12.057333 0.136364 0.02 -0.385872 38 6 1100 168 60 60 0 0 CC 12.031163 40 0 1109 0 KEEP - Tdrd5 YES AID_1 chr1 158248907 158248907 C A intronic Nphs2 NA NA intronic Nphs2 NA NA intronic ENSMUSG00000026602 NA NA 1qG3 NA NA chr1 158248907 AAGxTAA C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 107 1 0 45.891602 0.461538 0.02 -0.342014 21 18 627 490 60 60 0 0 CC 14.123629 47 0 1335 0 KEEP + Nphs2 NO AID_1 chr1 164634690 164634690 C G exonic Prrc2c nonsynonymous SNV NM_001081290:c.G4486C:p.V1496L exonic Prrc2c nonsynonymous SNV uc007dgr.1:c.G4486C:p.V1496L exonic ENSMUSG00000040225 nonsynonymous SNV ENSMUST00000028016:c.G4486C:p.V1496L 1qH2.1 NA NA chr1 164634690 CAAxTGC C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 137 2 0 34.045812 0.238095 0.02 1.340006 48 15 1379 419 60 60 0 0 CC 15.641823 52 0 1467 0 KEEP - Prrc2c NO AID_1 chr1 165242539 165242539 G A exonic Prrx1 synonymous SNV NM_001025570:c.C228T:p.T76T exonic Prrx1 synonymous SNV uc007dhh.1:c.C228T:p.T76T exonic ENSMUSG00000026586 synonymous SNV ENSMUST00000027878:c.C228T:p.T76T 1qH2.1 NA NA chr1 165242539 AGGxGTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 38 0 0 11.96742 0.277778 0.02 -0.157855 13 5 373 142 60 60 0 0 GG 5.413715 18 0 495 0 KEEP - Prrx1 YES AID_1 chr1 180034226 180034226 C T intergenic "Gm16432(dist=55804),Desi2(dist=83322)" NA NA ncRNA_exonic EG545391 NA NA exonic ENSMUSG00000066667 nonsynonymous SNV ENSMUST00000111149:c.C1048T:p.L350F 1qH4 "Score=0.946144;Name=No.519,chr1:179767643" NA chr1 180034226 GTCxTTA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 49 1 0 6.362906 0.15 0.02 -0.175285 17 3 481 86 60 46 0 0 CC 5.109775 17 0 477 0 KEEP + Gm16432 YES AID_1 chr1 182098898 182098898 G C intronic Adck3 NA NA intronic Adck3 NA NA intronic ENSMUSG00000026489 NA NA 1qH4 NA NA chr1 182098898 TGGxCTT G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 105 0 0 31.269211 0.325581 0.02 -0.384455 29 14 825 364 60 60 0 0 GG 13.232443 44 0 1212 0 KEEP - Adck3 NO AID_1 chr1 187090829 187090829 C T exonic Rab3gap2 synonymous SNV NM_001163754:c.C2853T:p.S951S exonic Rab3gap2 synonymous SNV uc007dyw.2:c.C1755T:p.S585S exonic ENSMUSG00000039318 synonymous SNV ENSMUST00000069652:c.C2853T:p.S951S 1qH5 NA NA chr1 187090829 CAGxCCT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 67 0 0 8.763702 0.2 0.02 -0.18417 16 4 466 112 60 60 0 0 CC 8.722208 29 0 798 0 KEEP + Rab3gap2 YES AID_1 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457707 0.457757 0.999892 58 0 0 30.13372 0.52381 0.02 -0.192935 10 11 296 312 60 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO AID_1 chr1 26744177 26744177 A G exonic 4931408C20Rik nonsynonymous SNV NM_001033764:c.T95C:p.M32T exonic 4931408C20Rik nonsynonymous SNV uc007amz.2:c.T95C:p.M32T exonic ENSMUSG00000073722 nonsynonymous SNV ENSMUST00000097801:c.T95C:p.M32T 1qA5 NA NA chr1 26744177 CACxTAA A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 323 5 0 14.912977 0.07874 0.02 2.081174 117 10 3218 253 60 60 0 0 AA 44.209341 147 0 3981 0 KEEP - 4931408C20Rik NO AID_1 chr1 31001490 31001490 C T exonic Ptp4a1 nonsynonymous SNV NM_011200:c.G220A:p.A74T exonic Ptp4a1 nonsynonymous SNV uc007anh.1:c.G220A:p.A74T exonic ENSMUSG00000026064 nonsynonymous SNV ENSMUST00000027232:c.G220A:p.A74T 1qA5 "Score=0.99735;Name=No.72510,chr19:40633408" NA chr1 31001490 GTGxACC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 69 0 1 7.964172 0.153846 0.02 -0.228019 22 4 643 109 60 60 0 0 CC 6.911167 23 0 634 0 KEEP - Ptp4a1 YES AID_1 chr1 53273252 53273252 T G intronic Pms1 NA NA intronic Pms1 NA NA intronic ENSMUSG00000026098 NA NA 1qC1.1 NA NA chr1 53273252 AACxTAC T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522093 0.522161 0.999869 51 0 0 22.097359 0.375 0.02 -0.210459 15 9 425 247 60 60 0 0 TT 6.316056 21 0 578 0 KEEP - Pms1 NO AID_1 chr1 59049461 59049461 C A intronic Stradb NA NA intronic "PAPK-A,Stradb" NA NA intronic ENSMUSG00000026027 NA NA 1qC1.3 NA NA chr1 59049461 CTGxTGT C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 86 0 0 10.045874 0.125 0.02 -0.350779 35 5 994 142 60 60 0 0 CC 10.205966 34 0 920 0 KEEP + Stradb NO AID_1 chr1 59539865 59539865 C T exonic Fzd7 nonsynonymous SNV NM_008057:c.C62T:p.A21V exonic Fzd7 nonsynonymous SNV uc011wlq.1:c.C62T:p.A21V exonic ENSMUSG00000041075 nonsynonymous SNV ENSMUST00000114246:c.C62T:p.A21V 1qC1.3 NA NA chr1 59539865 TTGxTCT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 42 0 0 9.341098 0.266667 0.02 -0.130986 11 4 290 112 60 60 0 0 CC 7.519172 25 0 686 0 KEEP + Fzd7 YES AID_1 chr1 71699431 71699431 G A exonic Fn1 synonymous SNV NM_001276408:c.C126T:p.S42S exonic Fn1 synonymous SNV uc007bju.1:c.C126T:p.S42S exonic ENSMUSG00000026193 synonymous SNV ENSMUST00000055226:c.C126T:p.S42S 1qC3 NA NA chr1 71699431 CGGxGAT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 165 0 0 26.608941 0.190476 0.02 1.232278 51 12 1465 342 60 60 0 0 GG 21.634264 72 0 1982 0 KEEP - Fn1 YES AID_1 chr1 71699432 71699432 G A exonic Fn1 nonsynonymous SNV NM_001276408:c.C125T:p.S42F exonic Fn1 nonsynonymous SNV uc007bju.1:c.C125T:p.S42F exonic ENSMUSG00000026193 nonsynonymous SNV ENSMUST00000055226:c.C125T:p.S42F 1qC3 NA NA chr1 71699432 GGGxATT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 166 0 0 26.808541 0.190476 0.02 1.232983 51 12 1479 344 60 60 0 0 GG 21.88846 73 0 2037 0 KEEP - Fn1 YES AID_1 chr1 71699517 71699517 C T exonic Fn1 nonsynonymous SNV NM_001276408:c.G40A:p.A14T exonic Fn1 nonsynonymous SNV uc007bju.1:c.G40A:p.A14T exonic ENSMUSG00000026193 nonsynonymous SNV ENSMUST00000055226:c.G40A:p.A14T 1qC3 NA NA chr1 71699517 CTGxCAG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 123 0 0 35.000474 0.275862 0.02 1.187454 42 16 1179 422 60 60 0 0 CC 15.016627 50 0 1356 0 KEEP - Fn1 YES AID_1 chr1 82678942 82678942 G A exonic Col4a3 nonsynonymous SNV NM_007734:c.G2732A:p.G911E exonic Col4a3 nonsynonymous SNV uc007brv.1:c.G2732A:p.G911E exonic ENSMUSG00000079465 nonsynonymous SNV ENSMUST00000113457:c.G2732A:p.G911E 1qC5 NA NA chr1 82678942 AGGxGCA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 86 1 0 31.131502 0.363636 0.02 -0.289383 21 12 595 348 60 60 0 0 GG 11.730536 39 0 1084 0 KEEP + Col4a3 YES AID_1 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 537 3 0 55.109082 0.097222 0.02 8.606692 260 28 6978 816 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO AID_1 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 558 3 0 91.318584 0.147766 0.02 6.407046 248 43 7207 1237 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 YES AID_1 chr1 90112835 90112835 C T exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1207T:p.R403C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1198T:p.R400C exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1201T:p.R401C 1qD NA NA chr1 90112835 AAGxGCA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 178 2 0 20.385261 0.127907 0.02 0.843331 75 11 2063 294 60 60 0 0 CC 18.044386 60 0 1644 0 KEEP + Ugt1a1 YES AID_1 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 202 2 0 60.802126 0.287234 0.02 0.96987 67 27 1755 724 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 NO AID_1 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 197 0 0 28.070853 0.157895 0.02 0.855149 80 15 2307 388 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO AID_1 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 404 0 0 41.378268 0.129032 0.02 5.484135 135 20 3698 577 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO AID_1 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 500 3 0 77.065947 0.155378 0.02 5.707383 212 39 6080 1055 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a YES AID_1 chr1 90142592 90142592 C T exonic Mroh2a synonymous SNV NM_001281466:c.C2586T:p.H862H exonic Heatr7b1 synonymous SNV uc011wov.1:c.C2595T:p.H865H exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.C2586T:p.H862H 1qD NA NA chr1 90142592 CCAxTTG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 474 6 0 36.665218 0.098039 0.02 5.083576 184 20 5312 555 60 60 0 0 CC 47.181285 157 0 4345 0 KEEP + Mroh2a YES AID_1 chr1 90145105 90145105 G A intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90145105 TCTxTGT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 186 0 0 24.91339 0.147727 0.02 2.317771 75 13 2184 347 60 60 0 0 GG 15.641541 52 0 1481 0 KEEP + Mroh2a YES AID_1 chr1 90145161 90145161 G A exonic Mroh2a stopgain SNV NM_001281466:c.G2876A:p.W959X exonic Heatr7b1 stopgain SNV uc011wov.1:c.G2885A:p.W962X exonic ENSMUSG00000079429 stopgain SNV ENSMUST00000113130:c.G2876A:p.W959X 1qD NA NA chr1 90145161 AGTxGGA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 218 0 0 10.064773 0.078947 0.02 2.355864 70 6 2030 163 70 60 0 0 GG 18.91133 63 0 1746 0 KEEP + Mroh2a YES AID_1 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 250 2 0 48.722878 0.192982 0.02 2.464653 92 22 2688 625 70 60 0 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a YES AID_1 chr1 90147949 90147949 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3319T:p.R1107W exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3328T:p.R1110W exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3319T:p.R1107W 1qD NA NA chr1 90147949 ATGxGGG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 220 2 0 38.006744 0.183673 0.02 2.26726 80 18 2003 497 70 60 0 0 CC 28.221001 94 0 2168 0 KEEP + Mroh2a YES AID_1 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 238 6 0 24.298179 0.108333 0.02 2.527037 107 13 2952 358 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO AID_1 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999998 91 0 0 24.260935 0.261905 0.02 -0.368281 31 11 884 295 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a YES AID_1 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 230 0 0 41.92634 0.159091 0.02 2.331818 111 21 3027 570 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO AID_1 chr1 90161760 90161760 G A exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.C1772T:p.P591L exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc011wow.1:c.C1376T:p.P459L exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000100097:c.C473T:p.P158L 1qD NA NA chr1 90161760 CAGxGCC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 131 0 0 31.670024 0.205882 0.02 1.18846 54 14 1540 400 60 60 0 0 GG 11.731581 39 0 1104 0 KEEP - A730008H23Rik YES AID_1 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 519 4 0 77.418853 0.15415 0.02 6.331016 214 39 5741 1059 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP - A730008H23Rik NO AID_1 chr1 90598051 90598051 G A exonic Arl4c synonymous SNV NM_177305:c.C189T:p.S63S exonic Arl4c synonymous SNV uc007byt.1:c.C189T:p.S63S exonic ENSMUSG00000049866 synonymous SNV ENSMUST00000051236:c.C189T:p.S63S 1qD NA NA chr1 90598051 GCAxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 201 2 0 47.885556 0.247059 0.02 0.94104 64 21 1838 585 60 60 0 0 GG 27.974178 93 0 2610 0 KEEP - Arl4c YES AID_1 chr1 94336375 94336375 G C UTR3 Ndufa10 NA NA UTR3 Ndufa10 NA NA UTR3 ENSMUSG00000026260 NA NA 1qD NA NA chr1 94336375 CAGxCAT G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 69 0 0 10.982333 0.178571 0.02 -0.245561 23 5 667 143 60 60 0 0 GG 9.019459 30 0 828 0 KEEP - Ndufa10 NO AID_1 chr1 9536938 9536938 G T UTR3 Rrs1 NA NA UTR3 Rrs1 NA NA UTR3 ENSMUSG00000061024 NA NA 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536938 CTTxACT G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 466 9 5 22.103098 0.063415 0.02 5.054958 192 13 5695 369 60 60 0 0 GG 41.529006 148 1 4229 28 KEEP + Rrs1 NO AID_1 chr2 111752901 111752901 A G exonic Olfr1306 nonsynonymous SNV NM_001011803:c.T185C:p.L62P exonic Olfr1306 nonsynonymous SNV uc008loc.1:c.T185C:p.L62P exonic ENSMUSG00000074954 nonsynonymous SNV ENSMUST00000099607:c.T185C:p.L62P 2qE3 NA NA chr2 111752901 AAAxGAA A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 215 3 1 54.464408 0.275 0.02 1.091921 58 22 1674 644 60 60 0 0 AA 32.784742 109 0 3034 0 KEEP - Olfr1306 NO AID_1 chr2 117939075 117939075 C T exonic Thbs1 nonsynonymous SNV NM_011580:c.C437T:p.A146V exonic Thbs1 nonsynonymous SNV uc008lrq.1:c.C437T:p.A146V exonic ENSMUSG00000040152 nonsynonymous SNV ENSMUST00000039559:c.C437T:p.A146V 2qE5 NA NA chr2 117939075 AAGxTCT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 109 0 0 11.759019 0.136364 0.02 -0.385754 38 6 1087 165 60 60 0 0 CC 13.809285 46 0 1240 0 KEEP + Thbs1 YES AID_1 chr2 119865322 119865322 C T intronic Pla2g4b NA NA intronic Pla2g4b NA NA intronic ENSMUSG00000033852 NA NA 2qE5 NA NA chr2 119865322 GTGxCCA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58285 0.58293 0.999863 54 0 0 16.36365 0.269231 0.02 -0.228001 19 7 537 196 60 60 0 0 CC 6.014978 20 0 544 0 KEEP + Pla2g4b YES AID_1 chr2 120879262 120879262 T A exonic Tgm5 nonsynonymous SNV NM_028799:c.A985T:p.I329F exonic Tgm5 nonsynonymous SNV uc008lxl.1:c.A985T:p.I329F exonic ENSMUSG00000053675 nonsynonymous SNV ENSMUST00000028721:c.A985T:p.I329F 2qE5 NA NA chr2 120879262 GAAxCCT T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 237 0 0 20.16878 0.111111 0.02 0.827156 88 11 2441 299 60 60 0 0 TT 29.129515 97 0 2608 0 KEEP - Tgm5 NO AID_1 chr2 126148809 126148809 C T exonic Atp8b4 nonsynonymous SNV NM_001080944:c.G3322A:p.A1108T exonic Atp8b4 nonsynonymous SNV uc008mdm.2:c.G1399A:p.A467T exonic ENSMUSG00000060131 nonsynonymous SNV ENSMUST00000040128:c.G3322A:p.A1108T 2qF1 NA NA chr2 126148809 GAGxTTT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 69 2 0 18.766074 0.347826 0.02 -0.201504 15 8 412 214 60 60 0 0 CC 10.227118 34 0 955 0 KEEP - Atp8b4 YES AID_1 chr2 127364492 127364492 A G exonic Prom2 nonsynonymous SNV NM_138750:c.T884C:p.L295P exonic Prom2 nonsynonymous SNV uc008mfp.2:c.T884C:p.L295P exonic ENSMUSG00000027376 nonsynonymous SNV ENSMUST00000028855:c.T884C:p.L295P 2qF1 NA NA chr2 127364492 GCGxGCA A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 176 0 0 28.366874 0.156627 0.02 1.057036 70 13 1985 378 60 60 0 0 AA 20.736956 69 0 1887 0 KEEP - Prom2 NO AID_1 chr2 131038872 131038872 G A UTR3 Ap5s1 NA NA UTR3 2310035K24Rik NA NA UTR3 ENSMUSG00000068264 NA NA 2qF1 NA NA chr2 131038872 CGCxAGT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 171 2 0 87.709268 0.435897 0.02 1.110132 44 34 1120 947 60 60 0 0 GG 19.780178 66 0 1622 0 KEEP + Ap5s1 YES AID_1 chr2 13496145 13496145 C T exonic Vim synonymous SNV NM_011701:c.C87T:p.S29S exonic Vim synonymous SNV uc008ikb.2:c.C87T:p.S29S exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.C87T:p.S29S 2qA1 NA NA chr2 13496145 GAGxTAT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 123 0 0 36.892768 0.3 0.02 -0.438508 35 15 1026 430 60 60 0 0 CC 15.629417 52 0 1456 0 KEEP + Vim YES AID_1 chr2 13496199 13496199 C T exonic Vim synonymous SNV NM_011701:c.C141T:p.S47S exonic Vim synonymous SNV uc008ikb.2:c.C141T:p.S47S exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.C141T:p.S47S 2qA1 NA NA chr2 13496199 CAGxACT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 82 0 0 9.425974 0.147059 0.02 -0.306176 29 5 828 132 60 60 0 0 CC 11.129344 37 0 1038 0 KEEP + Vim YES AID_1 chr2 13496385 13496385 G A exonic Vim synonymous SNV NM_011701:c.G327A:p.E109E exonic Vim synonymous SNV uc008ikb.2:c.G327A:p.E109E exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.G327A:p.E109E 2qA1 NA NA chr2 13496385 GGAxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 34 0 0 6.882319 0.230769 0.02 -0.114004 10 3 286 85 60 60 0 0 GG 5.11359 17 0 477 0 KEEP + Vim YES AID_1 chr2 13496461 13496461 C T exonic Vim nonsynonymous SNV NM_011701:c.C403T:p.L135F exonic Vim nonsynonymous SNV uc008ikb.2:c.C403T:p.L135F exonic ENSMUSG00000026728 nonsynonymous SNV ENSMUST00000028062:c.C403T:p.L135F 2qA1 NA NA chr2 13496461 GAGxTCG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 42 0 0 7.72134 0.307692 0.02 -0.122713 9 4 263 93 60 60 0 0 CC 6.917501 23 0 630 0 KEEP + Vim YES AID_1 chr2 13496470 13496470 C T exonic Vim nonsynonymous SNV NM_011701:c.C412T:p.L138F exonic Vim nonsynonymous SNV uc008ikb.2:c.C412T:p.L138F exonic ENSMUSG00000026728 nonsynonymous SNV ENSMUST00000028062:c.C412T:p.L138F 2qA1 NA NA chr2 13496470 CAGxTCA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196298 0.196312 0.999931 43 0 0 6.401356 0.25 0.02 -0.122764 9 3 257 79 60 60 0 0 CC 7.518762 25 0 683 0 KEEP + Vim YES AID_1 chr2 13496472 13496472 C T exonic Vim synonymous SNV NM_011701:c.C414T:p.L138L exonic Vim synonymous SNV uc008ikb.2:c.C414T:p.L138L exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.C414T:p.L138L 2qA1 NA NA chr2 13496472 GCTxAAG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162456 0.162467 0.999931 44 0 0 9.77631 0.363636 0.02 -0.114008 7 4 210 110 60 60 0 0 CC 7.520878 25 0 719 0 KEEP + Vim YES AID_1 chr2 13496527 13496527 C T exonic Vim synonymous SNV NM_011701:c.C469T:p.L157L exonic Vim synonymous SNV uc008ikb.2:c.C469T:p.L157L exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.C469T:p.L157L 2qA1 NA NA chr2 13496527 GAGxTGC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 68 0 0 23.071212 0.5 0.02 -0.166618 9 9 272 242 60 60 0 0 CC 11.367025 38 0 1030 0 KEEP + Vim YES AID_1 chr2 13496638 13496638 G A intronic Vim NA NA intronic Vim NA NA intronic ENSMUSG00000026728 NA NA 2qA1 NA NA chr2 13496638 TACxCGA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 50 0 0 9.002562 0.25 0.02 -0.140265 12 4 320 110 60 60 0 0 GG 7.514053 25 0 654 0 KEEP + Vim YES AID_1 chr2 152655072 152655072 C G intronic Bcl2l1 NA NA UTR3 Bcl2l1 NA NA UTR3 ENSMUSG00000007659 NA NA 2qH1 NA NA chr2 152655072 TAAxAGA C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 91 1 0 12.954281 0.146341 0.02 -0.359541 35 6 982 175 60 60 0 0 CC 14.735623 49 0 1324 0 KEEP - Bcl2l1 NO AID_1 chr2 158451201 158451201 G A exonic Actr5 synonymous SNV NM_175419:c.G324A:p.L108L exonic Actr5 synonymous SNV uc008nql.1:c.G324A:p.L108L exonic ENSMUSG00000037761 synonymous SNV ENSMUST00000045644:c.G324A:p.L108L 2qH1 NA NA chr2 158451201 ACTxCAG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.55282 0.552887 0.999879 62 0 0 8.040325 0.16 0.02 -0.219 21 4 599 109 60 60 0 0 GG 6.617884 22 0 624 0 KEEP + Actr5 YES AID_1 chr2 164424666 164424666 G A intronic Wfdc8 NA NA intronic Wfdc8 NA NA intronic ENSMUSG00000070533 NA NA 2qH3 NA NA chr2 164424666 ATTxGTT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 34 0 0 6.892259 0.176471 0.02 -0.149091 14 3 404 89 60 60 0 0 GG 4.211032 14 0 390 0 KEEP - Wfdc8 YES AID_1 chr2 164721585 164721585 T C exonic Zfp335 nonsynonymous SNV NM_199027:c.A2605G:p.I869V exonic Zfp335 nonsynonymous SNV uc008nwr.1:c.A2605G:p.I869V exonic ENSMUSG00000039834 nonsynonymous SNV ENSMUST00000041361:c.A2605G:p.I869V 2qH3 NA NA chr2 164721585 CAAxCTG T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 133 2 0 31.005742 0.295455 0.02 -0.385814 31 13 848 364 60 60 0 0 TT 21.050252 70 0 1878 0 KEEP - Zfp335 NO AID_1 chr2 167363852 167363852 G C exonic Snai1 nonsynonymous SNV NM_011427:c.G63C:p.E21D exonic Snai1 nonsynonymous SNV uc008nzy.1:c.G63C:p.E21D exonic ENSMUSG00000042821 nonsynonymous SNV ENSMUST00000052631:c.G63C:p.E21D 2qH3 NA NA chr2 167363852 CGAxCTG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.999859 34 0 0 7.401496 0.25 0.02 -0.105231 9 3 249 89 60 60 0 0 GG 5.412842 18 0 488 0 KEEP + Snai1 NO AID_1 chr2 172074867 172074867 G A exonic Mc3r nonsynonymous SNV NM_008561:c.G508A:p.V170I exonic Mc3r nonsynonymous SNV uc008ocl.1:c.G508A:p.V170I exonic ENSMUSG00000038537 nonsynonymous SNV ENSMUST00000038532:c.G508A:p.V170I 2qH3 NA NA chr2 172074867 TGGxTCT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 195 2 0 124.08506 0.534091 0.02 0.923847 41 47 1143 1281 60 60 0 0 GG 24.060873 80 0 2197 0 KEEP + Mc3r YES AID_1 chr2 172981587 172981587 A T exonic Pck1 nonsynonymous SNV NM_011044:c.A947T:p.K316M exonic Pck1 nonsynonymous SNV uc008odm.1:c.A947T:p.K316M exonic ENSMUSG00000027513 nonsynonymous SNV ENSMUST00000029017:c.A947T:p.K316M 2qH3 NA NA chr2 172981587 TGAxGTT A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 122 0 0 19.133324 0.166667 0.02 1.221658 45 9 1290 254 60 60 0 0 AA 14.437962 48 0 1339 0 KEEP + Pck1 NO AID_1 chr2 173101620 173101620 G C exonic Pmepa1 nonsynonymous SNV NM_022995:c.C66G:p.C22W exonic Pmepa1 nonsynonymous SNV uc008odq.1:c.C66G:p.C22W exonic ENSMUSG00000038400 nonsynonymous SNV ENSMUST00000036248:c.C66G:p.C22W 2qH3 NA NA chr2 173101620 CTGxCAG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 87 0 0 11.359937 0.192308 0.02 -0.228011 21 5 597 145 60 60 0 0 GG 13.231497 44 0 1197 0 KEEP - Pmepa1 NO AID_1 chr2 179923295 179923295 G T exonic Lama5 nonsynonymous SNV NM_001081171:c.C5623A:p.L1875I exonic Lama5 nonsynonymous SNV uc008oip.1:c.C5623A:p.L1875I exonic ENSMUSG00000015647 nonsynonymous SNV ENSMUST00000015791:c.C5623A:p.L1875I 2qH4 NA NA chr2 179923295 GAAxGCA G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 145 4 0 8.56299 0.092593 0.02 1.221634 49 5 1445 134 60 60 0 0 GG 15.942045 53 0 1499 0 KEEP - Lama5 NO AID_1 chr2 30268648 30268648 T G exonic Crat nonsynonymous SNV NM_007760:c.A146C:p.Y49S exonic Crat nonsynonymous SNV uc008jcl.1:c.A146C:p.Y49S exonic ENSMUSG00000026853 nonsynonymous SNV ENSMUST00000028207:c.A146C:p.Y49S 2qB NA NA chr2 30268648 TAAxAGT T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 54 0 0 13.76511 0.230769 0.02 -0.227976 20 6 545 170 60 60 0 0 TT 6.917318 23 0 626 0 KEEP - Crat NO AID_1 chr2 31951615 31951615 G C exonic Ppapdc3 nonsynonymous SNV NM_145521:c.G284C:p.R95P exonic Ppapdc3 nonsynonymous SNV uc008jel.1:c.G284C:p.R95P exonic ENSMUSG00000051373 nonsynonymous SNV ENSMUST00000057423:c.G284C:p.R95P 2qB NA NA chr2 31951615 AGCxACT G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 116 0 0 7.5158 0.086957 0.02 -0.41153 42 4 1040 115 60 60 0 0 GG 16.517408 55 0 1334 0 KEEP + Ppapdc3 NO AID_1 chr2 66321743 66321743 C T exonic Scn9a nonsynonymous SNV NM_018852:c.G5660A:p.R1887H exonic Scn9a nonsynonymous SNV uc008jxd.1:c.G5660A:p.R1887H exonic ENSMUSG00000075316 nonsynonymous SNV ENSMUST00000112354:c.G5654A:p.R1885H 2qC1.3 NA NA chr2 66321743 GCAxGCT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612341 0.612407 0.999892 59 0 0 18.794586 0.296296 0.02 -0.236628 19 8 477 221 60 60 0 0 CC 6.90516 23 0 571 0 KEEP + Scn9a YES AID_1 chr2 76727460 76727460 T G exonic Ttn nonsynonymous SNV NM_011652:c.A18679C:p.K6227Q exonic Ttn nonsynonymous SNV uc008kfn.1:c.A18679C:p.K6227Q exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000148747:c.A406C:p.K136Q 2qC3 NA NA chr2 76727460 TTTxTAA T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 71 0 0 27.82602 0.333333 0.02 -0.289406 22 11 631 317 60 60 0 0 TT 10.226614 34 0 943 0 KEEP - Ttn NO AID_1 chr2 83719490 83719490 G T exonic Fam171b nonsynonymous SNV NM_175514:c.G1348T:p.V450L exonic Fam171b nonsynonymous SNV uc008kie.1:c.G1348T:p.V450L exonic ENSMUSG00000048388 nonsynonymous SNV ENSMUST00000051454:c.G1348T:p.V450L 2qD NA NA chr2 83719490 ATGxTGA G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 74 0 0 43.876217 0.447368 0.02 -0.332806 21 17 575 471 60 60 0 0 GG 8.721158 29 0 785 0 KEEP + Fam171b NO AID_1 chr2 88327117 88327117 C G exonic Olfr1184 nonsynonymous SNV NM_146823:c.C227G:p.T76R exonic Olfr1184 nonsynonymous SNV uc008kpw.1:c.C227G:p.T76R exonic ENSMUSG00000051424 nonsynonymous SNV ENSMUST00000050038:c.C227G:p.T76R 2qD NA NA chr2 88327117 TGAxACC C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 150 0 0 40.808239 0.25 0.02 1.188506 51 17 1456 493 60 60 0 0 CC 21.656376 72 0 2015 0 KEEP + Olfr1184 NO AID_1 chr3 106191636 106191636 C T exonic BC051070 synonymous SNV NM_178412:c.G1200A:p.L400L exonic BC051070 synonymous SNV uc008qvy.1:c.G1200A:p.L400L exonic ENSMUSG00000027902 synonymous SNV ENSMUST00000029510:c.G1200A:p.L400L 3qF2.3 NA NA chr3 106191636 CTTxAAG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999997 72 0 0 34.085001 0.433333 0.02 -0.271818 17 13 505 368 60 60 0 0 CC 9.626672 32 0 920 0 KEEP - BC051070 YES AID_1 chr3 108505940 108505940 G C exonic Gpsm2 nonsynonymous SNV NM_029522:c.C121G:p.R41G exonic Gpsm2 nonsynonymous SNV uc008qzo.2:c.C121G:p.R41G exonic ENSMUSG00000027883 nonsynonymous SNV ENSMUST00000145558:c.C121G:p.R41G 3qF3 NA NA chr3 108505940 CGCxGCA G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 146 0 0 8.583467 0.089286 0.02 1.302644 51 5 1358 135 60 60 0 0 GG 19.22821 64 0 1620 0 KEEP - Gpsm2 NO AID_1 chr3 138189619 138189619 C G intronic Eif4e NA NA intronic Eif4e NA NA intronic ENSMUSG00000028156 NA NA 3qG3 NA NA chr3 138189619 AAGxCCG C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 57 1 0 14.957182 0.3 0.02 -0.175402 14 6 406 174 60 60 0 0 CC 8.721702 29 0 800 0 KEEP + Eif4e NO AID_1 chr3 145312269 145312269 C T exonic Cyr61 nonsynonymous SNV NM_010516:c.G194A:p.S65N exonic Cyr61 nonsynonymous SNV uc008rqq.2:c.G194A:p.S65N exonic ENSMUSG00000028195 nonsynonymous SNV ENSMUST00000029846:c.G194A:p.S65N 3qH2 NA NA chr3 145312269 TTGxTGC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 169 0 0 34.411326 0.230769 0.02 1.125185 50 15 1453 425 60 60 0 0 CC 18.891132 68 1 1936 14 KEEP - Cyr61 YES AID_1 chr3 157610816 157610816 G A exonic Ankrd13c nonsynonymous SNV NM_001013806:c.G326A:p.G109D exonic Ankrd13c nonsynonymous SNV uc008rvk.1:c.G326A:p.G109D exonic ENSMUSG00000039988 nonsynonymous SNV ENSMUST00000040787:c.G326A:p.G109D 3qH4 NA NA chr3 157610816 GCGxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 65 1 0 15.620988 0.25 0.02 -0.244439 21 7 563 191 60 60 0 0 GG 8.421444 28 0 772 0 KEEP + Ankrd13c YES AID_1 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 61 1 0 8.164064 0.153846 0.02 -0.23678 22 4 632 111 60 37 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 YES AID_1 chr3 37318355 37318355 C T exonic Nudt6 synonymous SNV NM_153561:c.G138A:p.E46E exonic Nudt6 synonymous SNV uc008par.1:c.G138A:p.E46E exonic ENSMUSG00000050174 synonymous SNV ENSMUST00000052645:c.G138A:p.E46E 3qB NA NA chr3 37318355 CAGxTCG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 138 0 0 19.923117 0.192308 0.02 1.239231 42 10 1235 262 60 60 0 0 CC 18.949678 63 0 1759 0 KEEP - Nudt6 YES AID_1 chr3 58220996 58220996 G A exonic Tsc22d2 synonymous SNV NM_001081229:c.G1386A:p.G462G exonic Tsc22d2 synonymous SNV uc008php.1:c.G1386A:p.G462G exonic ENSMUSG00000027806 synonymous SNV ENSMUST00000099090:c.G1386A:p.G462G 3qD NA NA chr3 58220996 TGGxGTT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260941 0.260965 0.999909 43 0 0 12.470098 0.3125 0.02 -0.140318 11 5 317 144 60 60 0 0 GG 6.918429 23 0 645 0 KEEP + Tsc22d2 YES AID_1 chr3 79690265 79690265 G A exonic Fam198b synonymous SNV NM_133187:c.G117A:p.L39L exonic Fam198b synonymous SNV uc008pny.2:c.G117A:p.L39L exonic ENSMUSG00000027955 synonymous SNV ENSMUST00000029567:c.G117A:p.L39L 3qE3 NA NA chr3 79690265 CCTxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 118 0 0 19.681069 0.243243 0.02 -0.332268 28 9 824 243 60 60 0 0 GG 18.94868 63 0 1769 0 KEEP + Fam198b YES AID_1 chr3 87587643 87587643 C G exonic Ntrk1 nonsynonymous SNV NM_001033124:c.G1135C:p.A379P exonic Ntrk1 nonsynonymous SNV uc008psw.1:c.G1135C:p.A379P exonic ENSMUSG00000028072 nonsynonymous SNV ENSMUST00000029712:c.G1135C:p.A379P 3qF1 NA NA chr3 87587643 CAGxCAT C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 378 4 0 32.821674 0.120301 0.02 2.420716 117 16 3353 464 60 60 0 0 CC 49.900715 166 0 4558 0 KEEP - Ntrk1 NO AID_1 chr3 88306715 88306715 A T exonic Lmna nonsynonymous SNV NM_001002011:c.T311A:p.L104Q exonic Lmna nonsynonymous SNV uc008pvj.2:c.T311A:p.L104Q exonic ENSMUSG00000028063 nonsynonymous SNV ENSMUST00000029699:c.T311A:p.L104Q 3qF1 NA NA chr3 88306715 TCTxGCT A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 146 0 0 13.720634 0.142857 0.02 -0.43842 42 7 1167 191 60 60 0 0 AA 22.253338 74 0 1994 0 KEEP - Lmna NO AID_1 chr3 90045911 90045911 C T exonic Creb3l4 synonymous SNV NM_030080:c.G411A:p.S137S exonic Creb3l4 synonymous SNV uc008qbp.1:c.G246A:p.S82S exonic ENSMUSG00000027938 synonymous SNV ENSMUST00000029547:c.G411A:p.S137S 3qF1 NA NA chr3 90045911 ATGxGAA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 130 0 0 53.788449 0.428571 0.02 -0.429541 28 21 714 583 60 60 0 0 CC 17.720598 59 0 1419 0 KEEP - Creb3l4 YES AID_1 chr3 90417777 90417777 G A exonic S100a6 nonsynonymous SNV NM_011313:c.G89A:p.S30N exonic S100a6 nonsynonymous SNV uc008qdb.1:c.G89A:p.S30N exonic ENSMUSG00000001025 nonsynonymous SNV ENSMUST00000001051:c.G89A:p.S30N 3qF1 NA NA chr3 90417777 TGAxCAA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 143 0 0 29.094728 0.220339 0.02 1.177818 46 13 1326 364 60 60 0 0 GG 20.453392 68 0 1896 0 KEEP + S100a6 YES AID_1 chr3 90417781 90417781 G T exonic S100a6 nonsynonymous SNV NM_011313:c.G93T:p.K31N exonic S100a6 nonsynonymous SNV uc008qdb.1:c.G93T:p.K31N exonic ENSMUSG00000001025 nonsynonymous SNV ENSMUST00000001051:c.G93T:p.K31N 3qF1 NA NA chr3 90417781 CAAxAAG G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 148 0 0 25.098429 0.196721 0.02 1.062587 49 12 1426 325 60 60 0 0 GG 21.037494 70 0 1960 0 KEEP + S100a6 NO AID_1 chr3 90418115 90418115 G C exonic S100a6 nonsynonymous SNV NM_011313:c.G141C:p.K47N exonic S100a6 nonsynonymous SNV uc008qdb.1:c.G141C:p.K47N exonic ENSMUSG00000001025 nonsynonymous SNV ENSMUST00000001051:c.G141C:p.K47N 3qF1 NA NA chr3 90418115 GAAxCTG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 99 0 0 11.288646 0.176471 0.02 -0.298145 28 6 826 153 60 60 0 0 GG 16.244136 54 0 1536 0 KEEP + S100a6 NO AID_1 chr3 93248220 93248220 T C exonic Tchh synonymous SNV NM_001163098:c.T1044C:p.R348R exonic Tchh synonymous SNV uc012cti.1:c.T1044C:p.R348R exonic ENSMUSG00000052415 synonymous SNV ENSMUST00000064257:c.T1044C:p.R348R 3qF2.1 NA NA chr3 93248220 GCGxGAG T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 137 2 0 60.794017 0.510638 0.02 -0.420828 23 24 636 635 60 60 0 0 TT 17.17073 65 1 1739 22 KEEP + Tchh NO AID_1 chr3 96051286 96051286 G A UTR3 Hist2h3c1 NA NA downstream Hist2h3c1 NA NA UTR3 ENSMUSG00000070392 NA NA 3qF2.1 "Score=0.997155;Name=No.81851,chr3:96042384" NA chr3 96051286 AGAxCTA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 130 1 2 27.660781 0.26087 0.02 -0.438457 34 12 989 334 60 60 0 0 GG 18.787396 68 1 1914 15 KEEP NA Hist2h3c1 YES AID_1 chr4 104830509 104830509 G A exonic Ppap2b nonsynonymous SNV NM_080555:c.G80A:p.R27K exonic Ppap2b nonsynonymous SNV uc008tye.1:c.G80A:p.R27K exonic ENSMUSG00000028517 nonsynonymous SNV ENSMUST00000064139:c.G80A:p.R27K 4qC6 NA NA chr4 104830509 CGAxGAA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 0.999999 66 2 0 14.968713 0.352941 0.02 -0.149089 11 6 323 169 60 60 0 0 GG 10.827226 36 0 994 0 KEEP + Ppap2b YES AID_1 chr4 106233948 106233948 G C exonic Dhcr24 nonsynonymous SNV NM_053272:c.G177C:p.K59N exonic Dhcr24 nonsynonymous SNV uc008tyl.1:c.G177C:p.K59N exonic ENSMUSG00000034926 nonsynonymous SNV ENSMUST00000047973:c.G177C:p.K59N 4qC7 NA NA chr4 106233948 CAAxCTG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 236 1 0 75.844546 0.352941 0.02 1.039333 55 30 1592 855 60 60 0 0 GG 35.742492 119 0 3260 0 KEEP + Dhcr24 NO AID_1 chr4 116311592 116311592 G A exonic Akr1a1 synonymous SNV NM_021473:c.C726T:p.G242G exonic Akr1a4 synonymous SNV uc008uha.1:c.C726T:p.G242G exonic ENSMUSG00000028692 synonymous SNV ENSMUST00000030455:c.C726T:p.G242G 4qD1 NA NA chr4 116311592 TCGxCCA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 117 0 0 17.559619 0.228571 0.02 -0.306165 27 8 752 219 60 60 0 0 GG 14.436613 48 0 1330 0 KEEP - Akr1a1 YES AID_1 chr4 118148451 118148451 T A exonic Tie1 nonsynonymous SNV NM_011587:c.A2684T:p.N895I exonic Tie1 nonsynonymous SNV uc008ukh.1:c.A2684T:p.N895I exonic ENSMUSG00000033191 nonsynonymous SNV ENSMUST00000047421:c.A2684T:p.N895I 4qD2.1 NA NA chr4 118148451 ATAxTGG T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 73 0 0 10.660564 0.192308 0.02 -0.236204 21 5 582 138 60 60 0 0 TT 10.526205 35 0 953 0 KEEP - Tie1 NO AID_1 chr4 120377158 120377158 G C exonic Kcnq4 nonsynonymous SNV NM_001081142:c.C1318G:p.R440G exonic Kcnq4 nonsynonymous SNV uc008unm.1:c.C1318G:p.R440G exonic ENSMUSG00000028631 nonsynonymous SNV ENSMUST00000030376:c.C1318G:p.R440G 4qD2.2 NA NA chr4 120377158 TTCxGTC G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 104 2 0 23.131667 0.333333 0.02 -0.297583 22 11 584 270 60 60 0 0 GG 16.532709 55 0 1440 0 KEEP - Kcnq4 NO AID_1 chr4 135700217 135700217 G A exonic Id3 synonymous SNV NM_008321:c.G309A:p.E103E exonic Id3 synonymous SNV uc012dnf.1:c.G309A:p.E103E exonic ENSMUSG00000007872 synonymous SNV ENSMUST00000008016:c.G309A:p.E103E 4qD3 NA NA chr4 135700217 TGAxCTC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 390 6 0 109.544212 0.348837 0.02 2.259645 84 45 2405 1243 60 60 0 0 GG 57.492174 195 1 5415 10 KEEP + Id3 YES AID_1 chr4 135700218 135700218 C T exonic Id3 nonsynonymous SNV NM_008321:c.C310T:p.L104F exonic Id3 nonsynonymous SNV uc012dnf.1:c.C310T:p.L104F exonic ENSMUSG00000007872 nonsynonymous SNV ENSMUST00000008016:c.C310T:p.L104F 4qD3 NA NA chr4 135700218 GAGxTCA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 389 6 0 34.398927 0.140625 0.02 2.268698 110 18 3144 483 60 60 0 0 CC 58.904595 196 0 5426 0 KEEP + Id3 YES AID_1 chr4 140354780 140354780 C T intronic Padi3 NA NA intronic Padi3 NA NA intronic ENSMUSG00000025328 NA NA 4qD3 NA NA chr4 140354780 GACxCTG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 138 2 0 22.180212 0.175439 0.02 1.293652 47 10 1351 289 60 60 0 0 CC 17.729859 59 0 1614 0 KEEP - Padi3 YES AID_1 chr4 140562091 140562091 G A exonic Atp13a2 nonsynonymous SNV NM_001164366:c.G2960A:p.S987N exonic Atp13a2 nonsynonymous SNV uc008vnn.2:c.G2960A:p.S987N exonic ENSMUSG00000036622 nonsynonymous SNV ENSMUST00000037055:c.G2960A:p.S987N 4qD3 NA NA chr4 140562091 TGAxTGT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 143 0 0 41.453402 0.361702 0.02 -0.420851 30 17 870 467 60 60 0 0 GG 23.161065 77 0 2158 0 KEEP + Atp13a2 YES AID_1 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139743 0.139832 0.999366 37 0 0 6.601242 0.25 0.02 -0.105238 9 3 265 81 60 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 YES AID_1 chr4 145489259 145489259 G C intergenic "Gm13238(dist=61364),1700095A21Rik(dist=161907)" NA NA exonic Gm13051 nonsynonymous SNV uc008vsa.1:c.G585C:p.Q195H exonic ENSMUSG00000078500 nonsynonymous SNV ENSMUST00000123460:c.G585C:p.Q195H 4qE1 "Score=0.986863;Name=No.86634,chr4:146677141" NA chr4 145489259 CCAxAGA G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999997 153 0 57 20.717861 0.2 0.02 -0.394661 36 9 1051 262 60 36 0 0 GG 17.147532 57 0 1638 0 KEEP + Gm13238 NO AID_1 chr4 148742503 148742503 G C exonic Ube4b nonsynonymous SNV NM_022022:c.C1074G:p.F358L exonic Ube4b nonsynonymous SNV uc008vwg.2:c.C1074G:p.F358L exonic ENSMUSG00000028960 nonsynonymous SNV ENSMUST00000103212:c.C1074G:p.F358L 4qE2 NA NA chr4 148742503 GAGxAAG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 61 0 0 15.816755 0.315789 0.02 -0.166648 13 6 390 181 60 60 0 0 GG 9.018961 30 0 841 0 KEEP - Ube4b NO AID_1 chr4 151735063 151735063 A C exonic Chd5 nonsynonymous SNV NM_001081376:c.A1301C:p.D434A exonic Chd5 nonsynonymous SNV uc008wai.1:c.A1301C:p.D434A exonic ENSMUSG00000005045 nonsynonymous SNV ENSMUST00000005175:c.A1301C:p.D434A 4qE2 NA NA chr4 151735063 GTGxTGC A C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 70 0 0 20.114026 0.32 0.02 -0.226528 17 8 463 231 60 60 0 0 AA 8.421664 28 0 780 0 KEEP + Chd5 NO AID_1 chr4 154596013 154596013 C T exonic Ski nonsynonymous SNV NM_011385:c.G617A:p.S206N exonic Ski nonsynonymous SNV uc008wcz.1:c.G617A:p.S206N exonic ENSMUSG00000029050 nonsynonymous SNV ENSMUST00000030917:c.G617A:p.S206N 4qE2 NA NA chr4 154596013 AGGxTGG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 116 0 0 37.523755 0.441176 0.02 -0.298027 19 15 534 405 60 60 0 0 CC 21.615545 72 0 1979 0 KEEP - Ski YES AID_1 chr4 154596550 154596550 C G exonic Ski nonsynonymous SNV NM_011385:c.G80C:p.S27T exonic Ski nonsynonymous SNV uc008wcz.1:c.G80C:p.S27T exonic ENSMUSG00000029050 nonsynonymous SNV ENSMUST00000030917:c.G80C:p.S27T 4qE2 NA NA chr4 154596550 GAGxTCA C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 29 0 0 7.001583 0.25 0.02 -0.105222 9 3 255 85 60 60 0 0 CC 3.309169 11 0 317 0 KEEP - Ski NO AID_1 chr4 155390131 155390131 C G exonic Tnfrsf4 synonymous SNV NM_011659:c.C576G:p.V192V exonic Tnfrsf4 synonymous SNV uc008wfu.1:c.C576G:p.V192V exonic ENSMUSG00000029075 synonymous SNV ENSMUST00000030952:c.C576G:p.V192V 4qE2 NA NA chr4 155390131 AGTxTGG C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 84 0 0 10.518714 0.166667 0.02 -0.2631 25 5 730 140 60 60 0 0 CC 12.331559 41 0 1156 0 KEEP + Tnfrsf4 NO AID_1 chr4 94717625 94717625 C T exonic Jun nonsynonymous SNV NM_010591:c.G338A:p.G113D exonic Jun nonsynonymous SNV uc008tsq.2:c.G338A:p.G113D exonic ENSMUSG00000052684 nonsynonymous SNV ENSMUST00000107094:c.G338A:p.G113D 4qC5 NA NA chr4 94717625 AAGxCCT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 149 0 0 18.531458 0.2 0.02 -0.402383 36 9 994 240 60 60 0 0 CC 25.257405 84 0 2284 0 KEEP - Jun YES AID_1 chr5 107569540 107569540 C T exonic Tgfbr3 nonsynonymous SNV NM_011578:c.G1273A:p.E425K exonic Tgfbr3 nonsynonymous SNV uc008ylz.2:c.G1273A:p.E425K exonic ENSMUSG00000029287 nonsynonymous SNV ENSMUST00000031224:c.G1273A:p.E425K 5qE5 NA NA chr5 107569540 GTTxCTT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 117 0 0 32.52158 0.333333 0.02 -0.350788 26 13 748 371 60 60 0 0 CC 18.045298 60 0 1676 0 KEEP - Tgfbr3 YES AID_1 chr5 112879171 112879171 A G exonic Gm6588 nonsynonymous SNV NM_001177504:c.A563G:p.K188R exonic Gm6588 nonsynonymous SNV uc012ebj.1:c.A563G:p.K188R exonic ENSMUSG00000072722 nonsynonymous SNV ENSMUST00000100882:c.A563G:p.K188R 5qF NA NA chr5 112879171 AAAxGTC A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 41 0 0 9.263142 0.210526 0.02 -0.166627 15 4 429 116 60 60 0 0 AA 5.412972 18 0 489 0 KEEP + Gm6588 NO AID_1 chr5 116056479 116056479 C T intronic Gcn1l1 NA NA intronic Gcn1l1 NA NA intronic ENSMUSG00000041638 NA NA 5qF NA NA chr5 116056479 ATGxAGC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 83 2 0 17.790357 0.296296 0.02 -0.236749 19 8 555 211 60 60 0 0 CC 12.327737 41 0 1114 0 KEEP + Gcn1l1 YES AID_1 chr5 118362821 118362821 C A exonic Nos1 nonsynonymous SNV NM_008712:c.C2297A:p.S766Y exonic Nos1 nonsynonymous SNV uc008zfy.1:c.C2297A:p.S766Y exonic ENSMUSG00000029361 nonsynonymous SNV ENSMUST00000111935:c.C1982A:p.S661Y 5qF NA NA chr5 118362821 AATxCCA C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 114 0 0 20.830314 0.25641 0.02 -0.341924 29 10 844 257 60 60 0 0 CC 17.445999 58 0 1632 0 KEEP + Nos1 NO AID_1 chr5 125869821 125869821 C G intronic Ubc NA NA intronic "Uba52,Ubb,Ubc" NA NA exonic ENSMUSG00000072612 nonsynonymous SNV ENSMUST00000100700:c.C130G:p.L44V 5qG1.1 NA NA chr5 125869821 CGGxTTA C G 1-AID-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.967425 0.967425 1 129 0 0 42.023144 0.34 0.02 1.338858 33 17 942 478 60 60 0 0 CC 18.038227 60 0 1678 0 KEEP - Ubc NO AID_1 chr5 130733088 130733088 C T intronic Tyw1 NA NA intronic Tyw1 NA NA intronic ENSMUSG00000056310 NA NA 5qG1.3 NA NA chr5 130733088 TCTxGGG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 532 1 0 153.891732 0.326531 0.02 3.467862 132 64 3383 1771 60 60 0 0 CC 63.620127 218 2 5433 16 KEEP + Tyw1 YES AID_1 chr5 135422130 135422130 G C exonic Cldn4 synonymous SNV NM_009903:c.C486G:p.A162A exonic Cldn4 synonymous SNV uc008zxd.2:c.C486G:p.A162A exonic ENSMUSG00000047501 synonymous SNV ENSMUST00000051401:c.C486G:p.A162A 5qG2 NA NA chr5 135422130 CGAxGCC G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 133 0 0 49.425427 0.375 0.02 1.204215 35 21 1008 555 60 60 0 0 GG 19.816637 66 0 1796 0 KEEP - Cldn4 NO AID_1 chr5 137546924 137546924 C T exonic Serpine1 nonsynonymous SNV NM_008871:c.G250A:p.A84T exonic Serpine1 nonsynonymous SNV uc009abn.2:c.G250A:p.A84T exonic ENSMUSG00000037411 nonsynonymous SNV ENSMUST00000041388:c.G250A:p.A84T 5qG2 NA NA chr5 137546924 TAGxATC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 101 0 0 36.553037 0.482759 0.02 -0.254313 15 14 436 386 60 60 0 0 CC 15.040397 50 0 1414 0 KEEP - Serpine1 YES AID_1 chr5 137547035 137547035 C T exonic Serpine1 nonsynonymous SNV NM_008871:c.G139A:p.V47I exonic Serpine1 nonsynonymous SNV uc009abn.2:c.G139A:p.V47I exonic ENSMUSG00000037411 nonsynonymous SNV ENSMUST00000041388:c.G139A:p.V47I 5qG2 NA NA chr5 137547035 GGAxCAC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423439 0.423478 0.999909 51 2 0 14.007122 0.285714 0.02 -0.184145 15 6 419 166 60 60 0 0 CC 7.219017 24 0 671 0 KEEP - Serpine1 YES AID_1 chr5 142560384 142560384 G A intronic Sdk1 NA NA intronic Sdk1 NA NA intronic ENSMUSG00000039683 NA NA 5qG2 NA NA chr5 142560384 TTTxGAA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 55 0 0 8.981239 0.235294 0.02 -0.149094 13 4 386 111 60 60 0 0 GG 7.821429 26 0 743 0 KEEP + Sdk1 YES AID_1 chr5 143665613 143665613 G A exonic Actb nonsynonymous SNV NM_007393:c.C992T:p.A331V exonic Actb nonsynonymous SNV uc009ajk.1:c.C992T:p.A331V exonic ENSMUSG00000029580 nonsynonymous SNV ENSMUST00000167721:c.C752T:p.A251V 5qG2 "Score=0.941418;Name=No.63423,chr16:37882621" NA chr5 143665613 GGAxCAA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 98 2 0 23.935066 0.294118 0.02 -0.297752 24 10 675 281 60 60 0 0 GG 13.213032 44 0 1195 0 KEEP - Actb YES AID_1 chr5 143666101 143666101 G T exonic Actb nonsynonymous SNV NM_007393:c.C724A:p.L242M exonic Actb nonsynonymous SNV uc009ajk.1:c.C724A:p.L242M exonic ENSMUSG00000029580 nonsynonymous SNV ENSMUST00000167721:c.C484A:p.L162M 5qG2 "Score=0.941418;Name=No.63423,chr16:37882621" NA chr5 143666101 GCAxCTC G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 103 0 0 30.410375 0.282609 0.02 -0.412098 33 13 924 361 60 60 0 0 GG 14.724937 49 0 1333 0 KEEP - Actb NO AID_1 chr5 148184305 148184305 A C intronic Flt3 NA NA intronic Flt3 NA NA intronic ENSMUSG00000042817 NA NA 5qG3 NA NA chr5 148184305 ACCxCGA A C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 156 0 0 67.434833 0.462963 0.02 1.302493 29 25 799 717 60 60 0 0 AA 21.351962 71 0 1914 0 KEEP - Flt3 NO AID_1 chr5 14910639 14910639 A T intronic Gm9758 NA NA intronic Gm9758 NA NA intronic ENSMUSG00000033219 NA NA 5qA1 "Score=0.976005;Name=No.90292,chr5:14924346" NA chr5 14910639 GACxGGC A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 360 2 160 114.08114 0.419048 0.02 2.66638 61 44 1739 1241 46 34 0 0 AA 29.43503 98 0 2682 0 KEEP - Gm9758 NO AID_1 chr5 14911322 14911322 C A intronic Gm9758 NA NA intronic Gm9758 NA NA intronic ENSMUSG00000033219 NA NA 5qA1 "Score=0.976005;Name=No.90292,chr5:14924346" NA chr5 14911322 GACxGAA C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 686 8 179 33.154282 0.071161 0.02 6.510671 248 19 6989 538 57 40 0 0 CC 70.928626 236 0 6351 0 KEEP - Gm9758 NO AID_1 chr5 14937061 14937061 C A intronic Speer4e NA NA ncRNA_intronic Speer8-ps1 NA NA intronic ENSMUSG00000091255 NA NA 5qA1 "Score=0.976972;Name=No.90321,chr5:14974070" NA chr5 14937061 AGAxTGA C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 255 13 7 53.366552 0.163522 0.02 3.665206 133 26 3715 717 60 37 0 0 CC 19.819777 66 0 1736 0 KEEP + Speer4e NO AID_1 chr5 15030242 15030242 A G exonic Gm17019 synonymous SNV NM_182957:c.T555C:p.R185R exonic Gm17019 synonymous SNV uc008wmq.2:c.T555C:p.R185R exonic ENSMUSG00000091897 synonymous SNV ENSMUST00000167908:c.T555C:p.R185R 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030242 CAAxCGT A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1563 34 413 33.616245 0.038529 0.02 13.975123 549 22 15255 635 60 36 0 0 AA 178.733243 601 1 16351 18 KEEP + Gm17019 NO AID_1 chr5 15124617 15124617 G A upstream Speer4d NA NA ncRNA_intronic "Speer7-ps1,Speer8-ps1" NA NA upstream ENSMUSG00000070933 NA NA 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15124617 GATxAGA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 207 22 27 19.053496 0.111111 0.02 0.836279 80 10 2340 279 60 52 0 0 GG 21.956404 73 0 2086 0 KEEP + Speer4d YES AID_1 chr5 15126151 15126151 C A exonic Speer4d nonsynonymous SNV NM_025759:c.C55A:p.Q19K exonic Speer4d nonsynonymous SNV uc008wmr.1:c.C55A:p.Q19K exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000095006:c.C55A:p.Q19K 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15126151 AAGxAGT C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1939 10 625 42.419333 0.048276 0.02 13.651503 552 28 15810 774 57 20 0 0 CC 258.048766 858 0 24079 0 KEEP + Speer4d NO AID_1 chr5 15128347 15128347 A T exonic Speer4d nonsynonymous SNV NM_025759:c.A401T:p.D134V exonic Speer4d nonsynonymous SNV uc008wmr.1:c.A401T:p.D134V exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000119100:c.A245T:p.D82V 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15128347 CTGxTTG A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 2000 37 521 56.173215 0.059801 0.02 14.775483 566 36 15560 978 60 43 0 0 AA 281.586314 937 0 25259 0 KEEP + Speer4d NO AID_1 chr5 17184153 17184153 G C exonic Sema3c nonsynonymous SNV NM_013657:c.G940C:p.D314H exonic Sema3c nonsynonymous SNV uc008wnl.1:c.G940C:p.D314H exonic ENSMUSG00000028780 nonsynonymous SNV ENSMUST00000030568:c.G940C:p.D314H 5qA3 NA NA chr5 17184153 ACTxACA G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 81 0 0 11.498151 0.172414 0.02 -0.25435 24 5 713 149 60 60 0 0 GG 11.425076 38 0 1071 0 KEEP + Sema3c NO AID_1 chr5 21126520 21126520 T G exonic Fbxl13 nonsynonymous SNV NM_001199632:c.A401C:p.D134A exonic Fbxl13 nonsynonymous SNV uc008wop.2:c.A401C:p.D134A exonic ENSMUSG00000048520 nonsynonymous SNV ENSMUST00000051358:c.A401C:p.D134A 5qA3 NA NA chr5 21126520 TTGxCCA T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 72 0 0 26.090744 0.416667 0.02 -0.210467 14 10 395 284 60 60 0 0 TT 12.32999 41 0 1123 0 KEEP - Fbxl13 NO AID_1 chr5 26402123 26402123 G A intronic Gm21671 NA NA intergenic "Speer4a(dist=36078),Gm10471(dist=6589)" NA NA intergenic "ENSMUSG00000073117(dist=17002),ENSMUSG00000073116(dist=6589)" NA NA 5qB1 "Score=0.958652;Name=No.90497,chr5:26366487" NA chr5 26402123 AGCxGGG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 432 4 22 38.273977 0.124183 0.02 4.006306 134 19 3527 541 60 60 0 0 GG 70.637566 235 0 6141 0 KEEP NA Gm21671 YES AID_1 chr5 26430695 26430695 T C exonic 5031410I06Rik nonsynonymous SNV NM_207657:c.A148G:p.R50G exonic 5031410I06Rik nonsynonymous SNV uc008wtf.1:c.A148G:p.R50G exonic ENSMUSG00000051940 nonsynonymous SNV ENSMUST00000063524:c.A148G:p.R50G 5qB1 "Score=0.971388;Name=No.90508,chr5:26432699" NA chr5 26430695 GTCxGTG T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1722 19 323 34.763828 0.050909 0.02 12.467998 522 28 14733 692 60 36 0 0 TT 219.784777 731 0 19937 0 KEEP - 5031410I06Rik NO AID_1 chr5 28398160 28398160 C T exonic Insig1 synonymous SNV NM_153526:c.C183T:p.S61S exonic Insig1 synonymous SNV uc012dtq.1:c.C183T:p.S61S exonic ENSMUSG00000045294 synonymous SNV ENSMUST00000059155:c.C183T:p.S61S 5qB1 NA NA chr5 28398160 CAGxTGG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 45 0 0 6.601826 0.25 0.02 -0.105203 9 3 253 81 60 60 0 0 CC 8.400159 28 0 746 0 KEEP + Insig1 YES AID_1 chr5 36837878 36837878 C G exonic Tbc1d14 nonsynonymous SNV NM_001113364:c.G965C:p.R322P exonic Tbc1d14 nonsynonymous SNV uc008xes.2:c.G965C:p.R322P exonic ENSMUSG00000029192 nonsynonymous SNV ENSMUST00000087550:c.G1535C:p.R512P 5qB3 NA NA chr5 36837878 ATGxGGC C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 53 2 0 19.524966 0.5 0.02 -0.122768 7 7 193 204 60 60 0 0 CC 8.714919 29 0 732 0 KEEP - Tbc1d14 NO AID_1 chr5 58110322 58110322 G C UTR5 Pcdh7 NA NA ncRNA_exonic AK034221 NA NA UTR5 ENSMUSG00000029108 NA NA 5qC1 NA NA chr5 58110322 GCAxTAG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 86 4 0 25.161319 0.4 0.02 -0.219211 15 10 426 277 60 60 0 0 GG 13.83594 46 0 1282 0 KEEP - Pcdh7 NO AID_1 chr5 82766552 82766552 G T intergenic "Lphn3(dist=541797),Mir1187(dist=461417)" NA NA intergenic "AK006457(dist=212817),Mir1187(dist=461417)" NA NA intergenic "ENSMUSG00000087431(dist=539101),ENSMUSG00000080586(dist=461417)" NA NA 5qE1 NA NA chr5 82766552 TGTxGCC G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 409 3 41 95.176549 0.305344 0.02 2.331208 91 40 2661 1111 60 60 0 0 GG 58.042877 193 0 5495 0 KEEP NA Lphn3 NO AID_1 chr5 8738775 8738775 G A exonic Abcb1a synonymous SNV NM_011076:c.G3153A:p.G1051G exonic Abcb1a synonymous SNV uc008wkm.1:c.G795A:p.G265G exonic ENSMUSG00000040584 synonymous SNV ENSMUST00000047753:c.G3153A:p.G1051G 5qA1 NA NA chr5 8738775 GGGxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 69 0 0 18.237711 0.411765 0.02 -0.149065 10 7 279 199 60 60 0 0 GG 14.137327 47 0 1314 0 KEEP + Abcb1a YES AID_1 chr6 113524598 113524598 G A exonic Fancd2 nonsynonymous SNV NM_001033244:c.G3130A:p.D1044N exonic Fancd2 nonsynonymous SNV uc009dgx.2:c.G3130A:p.D1044N exonic ENSMUSG00000034023 nonsynonymous SNV ENSMUST00000036340:c.G3130A:p.D1044N 6qE3 NA NA chr6 113524598 GATxACA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.38736 0.387407 0.999879 57 0 0 14.356842 0.3 0.02 -0.175405 14 6 416 168 60 60 0 0 GG 6.618684 22 0 639 0 KEEP + Fancd2 YES AID_1 chr6 115974931 115974931 C A exonic Tmcc1 synonymous SNV NM_177412:c.G1524T:p.L508L exonic Tmcc1 synonymous SNV uc009djo.2:c.G564T:p.L188L exonic ENSMUSG00000030126 synonymous SNV ENSMUST00000172510:c.G177T:p.L59L 6qE3 NA NA chr6 115974931 ATTxAGC C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 128 14 0 64.909117 0.402985 0.02 1.136555 40 27 1189 717 60 60 0 0 CC 11.726571 39 0 1104 0 KEEP - Tmcc1 NO AID_1 chr6 121302114 121302114 C T intronic Slc6a12 NA NA intronic Slc6a12 NA NA intronic ENSMUSG00000030109 NA NA 6qF1 NA NA chr6 121302114 TTTxTGT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322803 0.322807 0.999988 48 0 0 6.410938 0.166667 0.02 -0.15787 15 3 447 85 60 60 0 0 CC 8.121134 27 0 765 0 KEEP + Slc6a12 YES AID_1 chr6 122511163 122511163 C G exonic Aicda nonsynonymous SNV NM_009645:c.C261G:p.C87W exonic Aicda nonsynonymous SNV uc009dpj.1:c.C261G:p.C87W exonic ENSMUSG00000040627 nonsynonymous SNV ENSMUST00000043301:c.C261G:p.C87W 6qF1 NA NA chr6 122511163 GTGxTAT C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 312 9 0 30.295031 0.089888 0.02 3.81141 162 16 4629 460 60 60 0 0 CC 23.758487 79 0 2186 0 KEEP + Aicda NO AID_1 chr6 124695828 124695828 C T exonic Atn1 synonymous SNV NM_007881:c.G2301A:p.L767L exonic Atn1 synonymous SNV uc009drq.1:c.G2301A:p.L767L exonic ENSMUSG00000004263 synonymous SNV ENSMUST00000088357:c.G2301A:p.L767L 6qF2 NA NA chr6 124695828 GTAxAGG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 71 0 0 21.008926 0.346154 0.02 -0.228002 17 9 500 240 60 60 0 0 CC 8.409942 28 0 766 0 KEEP - Atn1 YES AID_1 chr6 124803120 124803120 C T exonic Leprel2 synonymous SNV NM_013534:c.G1149A:p.K383K exonic Leprel2 synonymous SNV uc009dsf.1:c.G1149A:p.K383K exonic ENSMUSG00000023191 synonymous SNV ENSMUST00000023958:c.G1149A:p.K383K 6qF2 NA NA chr6 124803120 TCTxTTC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851892 0.851984 0.999892 74 0 0 29.400028 0.324324 0.02 -0.333257 25 12 742 338 60 60 0 0 CC 6.918195 23 0 653 0 KEEP - Leprel2 YES AID_1 chr6 132798076 132798076 G A exonic Tas2r123 nonsynonymous SNV NM_207025:c.G917A:p.G306E exonic Tas2r123 nonsynonymous SNV uc009ejq.1:c.G917A:p.G306E exonic ENSMUSG00000057381 nonsynonymous SNV ENSMUST00000071696:c.G917A:p.G306E 6qG1 NA NA chr6 132798076 TGGxAAA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 79 0 0 21.182213 0.243243 0.02 -0.333177 28 9 801 258 60 60 0 0 GG 9.324919 31 0 877 0 KEEP + Tas2r123 YES AID_1 chr6 136752630 136752630 G A exonic Hist4h4 nonsynonymous SNV NM_175652:c.C271T:p.L91F exonic Hist4h4 nonsynonymous SNV uc009emd.1:c.C271T:p.L91F exonic ENSMUSG00000068851 nonsynonymous SNV ENSMUST00000090778:c.C271T:p.L91F 6qG1 NA NA chr6 136752630 TGAxCGC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 204 0 0 16.838635 0.111111 0.02 0.976482 72 9 2063 248 60 60 0 0 GG 28.566027 95 0 2662 0 KEEP - Hist4h4 YES AID_1 chr6 148197997 148197997 G T intronic Tmtc1 NA NA intronic Tmtc1 NA NA intronic ENSMUSG00000030306 NA NA 6qG3 NA NA chr6 148197997 GTGxCAT G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 125 0 0 26.306727 0.222222 0.02 1.221663 42 12 1227 330 60 60 0 0 GG 13.827411 46 0 1277 0 KEEP - Tmtc1 NO AID_1 chr6 29383598 29383598 G A exonic Flnc nonsynonymous SNV NM_001081185:c.G140A:p.C47Y exonic Flnc nonsynonymous SNV uc009bdm.1:c.G140A:p.C47Y exonic ENSMUSG00000068699 nonsynonymous SNV ENSMUST00000065090:c.G140A:p.C47Y 6qA3.3 NA NA chr6 29383598 GGTxCAA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 130 0 0 16.475678 0.177778 0.02 -0.394642 37 8 1077 218 60 60 0 0 GG 19.847811 66 0 1811 0 KEEP + Flnc YES AID_1 chr6 30610834 30610834 C T intronic Cep41 NA NA intronic Tsga14 NA NA intronic ENSMUSG00000029790 NA NA 6qA3.3 NA NA chr6 30610834 GAAxGAT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 227 2 0 91.576344 0.45 0.02 0.985417 44 36 1145 983 60 60 0 0 CC 28.259172 94 0 2447 0 KEEP - Cep41 YES AID_1 chr6 38036009 38036009 T G exonic Atp6v0a4 nonsynonymous SNV NM_080467:c.A599C:p.K200T exonic Atp6v0a4 nonsynonymous SNV uc009bjp.2:c.A599C:p.K200T exonic ENSMUSG00000038600 nonsynonymous SNV ENSMUST00000040259:c.A599C:p.K200T 6qB1 NA NA chr6 38036009 AACxTCA T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 59 0 0 10.866972 0.277778 0.02 -0.157843 13 5 377 131 60 60 0 0 TT 9.02353 30 0 836 0 KEEP - Atp6v0a4 NO AID_1 chr6 41396015 41396015 C T intronic Gm10334 NA NA ncRNA_intronic Z12226 NA NA intronic ENSMUSG00000071517 NA NA 6qB1 "Score=0.964411;Name=No.93602,chr6:41304715" NA chr6 41396015 GCAxGAA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818429 0.818465 0.999957 80 3 0 7.262056 0.111111 0.02 -0.31558 32 4 838 108 60 37 0 0 CC 7.78172 26 0 656 0 KEEP + Gm10334 YES AID_1 chr6 42300966 42300966 C T exonic Zyx nonsynonymous SNV NM_011777:c.C230T:p.P77L exonic Zyx nonsynonymous SNV uc009bqy.1:c.C230T:p.P77L exonic ENSMUSG00000029860 nonsynonymous SNV ENSMUST00000031890:c.C230T:p.P77L 6qB2.1 NA NA chr6 42300966 CTCxCCT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 425 2 0 78.502219 0.2125 0.02 3.978246 126 34 3607 982 60 60 0 0 CC 50.491102 168 0 4621 0 KEEP + Zyx YES AID_1 chr6 47979317 47979317 C T exonic Zfp777 nonsynonymous SNV NM_001081382:c.G1273A:p.G425S exonic Zfp777 nonsynonymous SNV uc009btt.1:c.G1273A:p.G425S exonic ENSMUSG00000071477 nonsynonymous SNV ENSMUST00000095944:c.G1141A:p.G381S 6qB2.3 NA NA chr6 47979317 GACxTTC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 191 0 0 121.297375 0.505747 0.02 1.030546 43 44 1251 1265 60 60 0 0 CC 26.448975 88 0 2446 0 KEEP - Zfp777 YES AID_1 chr6 5027574 5027574 C T exonic Ppp1r9a synonymous SNV NM_181595:c.C1852T:p.L618L exonic Ppp1r9a synonymous SNV uc009avx.1:c.C1852T:p.L618L exonic ENSMUSG00000032827 synonymous SNV ENSMUST00000035813:c.C1852T:p.L618L 6qA1 NA NA chr6 5027574 CTTxTGG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 194 0 0 67.749822 0.329412 0.02 1.048421 57 28 1666 778 60 60 0 0 CC 21.357153 71 0 2018 0 KEEP + Ppp1r9a YES AID_1 chr7 105284405 105284405 T G exonic Capn5 nonsynonymous SNV NM_007602:c.A371C:p.N124T exonic Capn5 nonsynonymous SNV uc009ikc.1:c.A371C:p.N124T exonic ENSMUSG00000035547 nonsynonymous SNV ENSMUST00000040971:c.A371C:p.N124T 7qE2 NA NA chr7 105284405 AAGxTGA T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 103 0 0 17.551051 0.222222 0.02 -0.314767 28 8 743 220 60 60 0 0 TT 14.710595 49 0 1319 0 KEEP - Capn5 NO AID_1 chr7 10967253 10967253 G T intergenic "Vmn1r66(dist=106553),Vmn1r67(dist=64885)" NA NA intergenic "Vmn1r66(dist=106553),Vmn1r67(dist=64885)" NA NA exonic ENSMUSG00000034122 nonsynonymous SNV ENSMUST00000086269:c.C936A:p.H312Q 7qA1 NA NA chr7 10967253 GATxTGG G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 196 4 0 51.496508 0.295775 0.02 1.162082 50 21 1464 602 60 60 0 0 GG 27.372341 91 0 2554 0 KEEP NA Vmn1r66 NO AID_1 chr7 115708475 115708475 A C exonic Olfr504 nonsynonymous SNV NM_001011858:c.T833G:p.V278G exonic Olfr504 nonsynonymous SNV uc009jco.1:c.T833G:p.V278G exonic ENSMUSG00000060105 nonsynonymous SNV ENSMUST00000075595:c.T833G:p.V278G 7qE3 "Score=0.941164;Name=No.101575,chr7:111782411" NA chr7 115708475 AAAxCTG A C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 163 0 0 38.485984 0.285714 0.02 1.302468 40 16 1120 454 60 60 0 0 AA 24.959452 83 0 2265 0 KEEP - Olfr504 NO AID_1 chr7 125633697 125633697 G A exonic Itpripl2 synonymous SNV NM_001033380:c.C1152T:p.D384D exonic Itpripl2 synonymous SNV uc009jjx.1:c.C1152T:p.D384D exonic ENSMUSG00000073858 synonymous SNV ENSMUST00000098091:c.C1152T:p.D384D 7qF2 NA NA chr7 125633697 CAAxTCT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 130 0 0 40.665149 0.410256 0.02 -0.34201 23 16 666 445 60 60 0 0 GG 20.751485 69 0 1888 0 KEEP - Itpripl2 YES AID_1 chr7 125634235 125634235 C A exonic Itpripl2 nonsynonymous SNV NM_001033380:c.G614T:p.S205I exonic Itpripl2 nonsynonymous SNV uc009jjx.1:c.G614T:p.S205I exonic ENSMUSG00000073858 nonsynonymous SNV ENSMUST00000098091:c.G614T:p.S205I 7qF2 NA NA chr7 125634235 CAGxTGC C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 29 0 0 16.469363 0.545455 0.02 -0.096467 5 6 145 169 60 60 0 0 CC 3.609479 12 0 335 0 KEEP - Itpripl2 NO AID_1 chr7 125634751 125634751 C T exonic Itpripl2 nonsynonymous SNV NM_001033380:c.G98A:p.S33N exonic Itpripl2 nonsynonymous SNV uc009jjx.1:c.G98A:p.S33N exonic ENSMUSG00000073858 nonsynonymous SNV ENSMUST00000098091:c.G98A:p.S33N 7qF2 NA NA chr7 125634751 TCGxTGC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 70 0 0 25.962723 0.4 0.02 -0.227988 15 10 439 285 60 60 0 0 CC 11.70734 39 0 1074 0 KEEP - Itpripl2 YES AID_1 chr7 133941438 133941438 G A intronic Aldoa NA NA intronic Aldoa NA NA intronic ENSMUSG00000030695 NA NA 7qF3 NA NA chr7 133941438 AGAxCTC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 81 0 0 18.791047 0.296296 0.02 -0.23679 19 8 565 221 60 60 0 0 GG 10.641115 42 1 1171 18 KEEP - Aldoa YES AID_1 chr7 139158680 139158680 G T exonic Gpr26 nonsynonymous SNV NM_173410:c.G70T:p.G24W exonic Gpr26 nonsynonymous SNV uc009kbs.1:c.G70T:p.G24W exonic ENSMUSG00000040125 nonsynonymous SNV ENSMUST00000045840:c.G70T:p.G24W 7qF3 NA NA chr7 139158680 AACxGGC G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 61 2 0 30.136359 0.52381 0.02 -0.20164 10 11 266 312 60 60 0 0 GG 9.612239 32 0 772 0 KEEP + Gpr26 NO AID_1 chr7 148450095 148450095 G A intronic Irf7 NA NA intronic Irf7 NA NA intronic ENSMUSG00000025498 NA NA 7qF5 NA NA chr7 148450095 TGTxCTA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 74 2 0 10.981069 0.238095 0.02 -0.192928 16 5 470 136 60 60 0 0 GG 11.712229 39 0 1101 0 KEEP - Irf7 YES AID_1 chr7 17460851 17460851 G C exonic Dact3 synonymous SNV NM_001081655:c.G78C:p.G26G exonic Dact3 synonymous SNV uc009fij.1:c.G78C:p.G26G exonic ENSMUSG00000078794 synonymous SNV ENSMUST00000108493:c.G78C:p.G26G 7qA2 NA NA chr7 17460851 CGGxCTC G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120013 0.120436 0.99649 32 0 0 7.678685 0.3 0.02 -0.096472 7 3 202 89 60 60 0 0 GG 4.511214 15 0 411 0 KEEP + Dact3 NO AID_1 chr7 19639885 19639885 G C UTR3 Sympk NA NA UTR3 Sympk NA NA exonic ENSMUSG00000023118 unknown UNKNOWN 7qA3 NA NA chr7 19639885 GGGxGGA G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 83 2 0 9.085198 0.178571 0.02 -0.24552 23 5 661 124 60 60 0 0 GG 11.125638 37 0 1005 0 KEEP + Sympk NO AID_1 chr7 25670179 25670179 G A exonic Rps19 nonsynonymous SNV NM_023133:c.G25A:p.V9I exonic Rps19 nonsynonymous SNV uc009fqq.1:c.G25A:p.V9I exonic ENSMUSG00000040952 nonsynonymous SNV ENSMUST00000124035:c.G133A:p.V45I 7qA3 NA NA chr7 25670179 GACxTTA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 171 0 0 32.046319 0.237288 0.02 1.178012 45 14 1182 394 60 60 0 0 GG 22.796328 76 0 1921 0 KEEP + Rps19 YES AID_1 chr7 26573457 26573457 C A exonic Axl nonsynonymous SNV NM_001190974:c.G41T:p.C14F exonic Axl nonsynonymous SNV uc009ftx.2:c.G41T:p.C14F exonic ENSMUSG00000002602 nonsynonymous SNV ENSMUST00000002677:c.G41T:p.C14F 7qA3 NA NA chr7 26573457 CAGxAGC C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 70 1 0 16.88852 0.275862 0.02 -0.253606 21 8 622 205 60 60 0 0 CC 8.396407 28 0 771 0 KEEP - Axl NO AID_1 chr7 28638577 28638577 A T exonic Zfp59 nonsynonymous SNV NM_011762:c.A434T:p.D145V exonic Zfp59 nonsynonymous SNV uc009fxf.1:c.A434T:p.D145V exonic ENSMUSG00000078779 nonsynonymous SNV ENSMUST00000171387:c.A275T:p.D92V 7qA3 "Score=0.988211;Name=No.94286,chr6:36907022" NA chr7 28638577 GTGxTGC A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 79 0 0 13.353837 0.222222 0.02 -0.236748 21 6 575 167 60 60 0 0 AA 11.100456 37 0 979 0 KEEP + Zfp59 NO AID_1 chr7 36255110 36255110 G A intergenic "Slc7a9(dist=4057),Tdrd12(dist=23519)" NA NA intergenic "Slc7a9(dist=4057),Tdrd12(dist=23519)" NA NA exonic ENSMUSG00000030491 synonymous SNV ENSMUST00000108043:c.C3297T:p.D1099D 7qB2 NA NA chr7 36255110 ATAxTCT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 109 0 0 14.888342 0.175 0.02 -0.350787 33 7 950 196 60 60 0 0 GG 16.542047 55 0 1528 0 KEEP NA Slc7a9 YES AID_1 chr7 46426079 46426079 G T intergenic "NONE(dist=NONE),Gm21276(dist=85915)" NA NA intergenic "NONE(dist=NONE),Gm16387(dist=85915)" NA NA intergenic "NONE(dist=NONE),ENSMUSG00000074169(dist=85915)" NA NA 7qB3 "Score=0.980122;Name=No.101108,chr7:39276342" NA chr7 46426079 TGTxATG G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 426 2 82 9.431363 0.048 0.02 2.294422 119 6 3516 170 60 46 0 0 GG 64.671426 215 0 6178 0 KEEP NA NONE NO AID_1 chr7 53085504 53085504 G A exonic Grwd1 nonsynonymous SNV NM_153419:c.C316T:p.L106F exonic Grwd1 nonsynonymous SNV uc009gxj.2:c.C4T:p.L2F exonic ENSMUSG00000053801 nonsynonymous SNV ENSMUST00000098448:c.C4T:p.L2F 7qB4 NA NA chr7 53085504 GAAxCAT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 78 0 0 8.73726 0.16 0.02 -0.228013 21 4 608 116 60 60 0 0 GG 11.714615 39 0 1066 0 KEEP - Grwd1 YES AID_1 chr7 53317214 53317214 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53317214 GGGxACA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 147 0 0 16.748985 0.142857 0.02 1.267321 48 8 1399 229 60 70 0 0 GG 18.342384 61 0 1708 0 KEEP + Nomo1 YES AID_1 chr7 53323993 53323993 C T intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53323993 TCCxTTG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099505 0.099721 0.997832 29 0 0 10.284943 0.4 0.02 -0.087702 6 4 178 113 60 60 0 0 CC 4.813261 16 0 459 0 KEEP + Nomo1 YES AID_1 chr7 53379241 53379241 T C intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53379241 CAGxCCC T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 82 0 0 33.181799 0.4375 0.02 -0.287788 18 14 503 361 60 60 0 0 TT 10.526153 35 0 953 0 KEEP - Abcc8 NO AID_1 chr7 53435158 53435158 G A intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53435158 GCTxGGC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 25 0 0 9.391398 0.333333 0.02 -0.105202 8 4 221 108 60 60 0 0 GG 3.308892 11 0 311 0 KEEP - Abcc8 YES AID_1 chr7 53543464 53543464 C T exonic Otog synonymous SNV NM_013624:c.C5226T:p.I1742I exonic Otog synonymous SNV uc009gyk.2:c.C5226T:p.I1742I exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000164538:c.C5226T:p.I1742I 7qB4 NA NA chr7 53543464 CATxGAC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 41 2 0 12.214413 0.294118 0.02 -0.149037 12 5 320 143 60 60 0 0 CC 5.407814 18 0 455 0 KEEP + Otog YES AID_1 chr7 53553863 53553863 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553863 ATGxATC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 63 0 0 11.057704 0.217391 0.02 -0.21921 18 5 512 139 60 60 0 0 CC 8.420207 28 0 768 0 KEEP + Otog YES AID_1 chr7 53553867 53553867 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553867 ATCxACC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 66 0 0 11.460457 0.208333 0.02 -0.227471 19 5 536 144 60 60 0 0 CC 9.023407 30 0 837 0 KEEP + Otog YES AID_1 chr7 53890970 53890970 A G intronic Sergef NA NA intronic Sergef NA NA intronic ENSMUSG00000030839 NA NA 7qB4 NA NA chr7 53890970 TCAxCAT A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076843 0.077336 0.993634 21 0 0 7.243408 0.333333 0.02 -0.07892 6 3 167 83 60 60 0 0 AA 3.607242 12 0 316 0 KEEP - Sergef NO AID_1 chr7 53954822 53954822 T C exonic Saal1 synonymous SNV NM_030233:c.A954G:p.E318E exonic Saal1 synonymous SNV uc009gyu.2:c.A954G:p.E318E exonic ENSMUSG00000006763 synonymous SNV ENSMUST00000143082:c.A954G:p.E318E 7qB4 NA NA chr7 53954822 CTGxTCC T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 130 0 0 12.821218 0.139535 0.02 1.436221 37 6 1018 175 60 60 0 0 TT 17.444287 58 0 1591 0 KEEP - Saal1 NO AID_1 chr7 53997787 53997787 G T intronic Saa1 NA NA intronic Saa1 NA NA intronic ENSMUSG00000074115 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:54006945" NA chr7 53997787 GGGxCCT G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 45 0 1 14.862683 0.461538 0.02 -0.113984 7 6 203 159 60 60 0 0 GG 6.918436 23 0 646 0 KEEP - Saa1 NO AID_1 chr7 54028653 54028653 A G intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54028653 AATxCCA A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 100 4 0 9.669561 0.15625 0.02 -0.280445 27 5 711 133 60 60 0 0 AA 16.527518 55 0 1431 0 KEEP - Hps5 NO AID_1 chr7 54070838 54070838 A G intronic Gtf2h1 NA NA intronic Gtf2h1 NA NA intronic ENSMUSG00000006599 NA NA 7qB4 NA NA chr7 54070838 CTCxGGT A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 96 0 0 15.602202 0.28 0.02 -0.236769 18 7 521 187 60 60 0 0 AA 14.125583 47 0 1302 0 KEEP + Gtf2h1 NO AID_1 chr7 54104300 54104300 A G intronic Ldha NA NA intronic Ldha NA NA intronic ENSMUSG00000063229 NA NA 7qB4 NA NA chr7 54104300 AGAxTCA A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.999859 36 0 0 6.779464 0.1875 0.02 -0.140314 13 3 368 87 60 60 0 0 AA 5.411271 18 0 474 0 KEEP + Ldha NO AID_1 chr7 54441179 54441179 G T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.C863A:p.P288H 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441179 TCAxGTG G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 263 3 2 24.788545 0.122642 0.02 2.268077 93 13 2713 357 60 43 0 0 GG 29.167216 97 0 2750 0 KEEP - Mrgpra6 NO AID_1 chr7 54441206 54441206 C T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.G836A:p.S279N 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441206 GCAxTCT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 258 1 2 17.837386 0.086957 0.02 2.180401 105 10 2995 278 60 55 0 0 CC 25.567853 85 0 2393 0 KEEP - Mrgpra6 YES AID_1 chr7 54681932 54681932 T A exonic Mrgpra2a nonsynonymous SNV NM_001172588:c.A947T:p.E316V exonic Mrgpra2a nonsynonymous SNV uc009hag.2:c.A947T:p.E316V exonic ENSMUSG00000039854 nonsynonymous SNV ENSMUST00000060569:c.A869T:p.E290V 7qB4 "Score=0.992523;Name=No.101347,chr7:54709200" NA chr7 54681932 GTCxCAG T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 229 0 23 24.594443 0.210526 0.02 1.186713 45 12 1291 316 46 46 0 0 TT 39.094587 130 0 3632 0 KEEP - Mrgpra2a NO AID_1 chr7 55236551 55236551 A T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.T671A:p.L224H exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.T671A:p.L224H exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.T671A:p.L224H 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236551 AGAxGAA A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 161 3 0 16.449696 0.142857 0.02 1.011916 48 8 1374 226 60 60 0 0 AA 18.945799 63 0 1739 0 KEEP - Mrgpra4 NO AID_1 chr7 55236601 55236601 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G621A:p.T207T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G621A:p.T207T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G621A:p.T207T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236601 TTTxGTC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 221 5 2 19.679577 0.121951 0.02 2.426025 72 10 1963 281 60 60 0 0 CC 27.652936 92 0 2412 0 KEEP - Mrgpra4 YES AID_1 chr7 55236643 55236643 G A exonic Mrgpra4 synonymous SNV NM_153524:c.C579T:p.T193T exonic Mrgpra4 synonymous SNV uc009hak.1:c.C579T:p.T193T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.C579T:p.T193T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236643 CAGxGTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 272 4 2 10.415696 0.064516 0.02 2.488985 87 6 2522 172 60 60 0 0 GG 34.279803 114 0 3142 0 KEEP - Mrgpra4 YES AID_1 chr7 55236700 55236700 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G522A:p.T174T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G522A:p.T174T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G522A:p.T174T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236700 GTTxGTT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 239 0 0 58.249202 0.307692 0.02 0.91508 54 24 1428 677 60 60 0 0 CC 33.35385 111 0 2837 0 KEEP - Mrgpra4 YES AID_1 chr7 55276756 55276756 A G exonic Mrgprx1 synonymous SNV NM_207540:c.T612C:p.I204I exonic Mrgprx1 synonymous SNV uc009hal.1:c.T612C:p.I204I exonic ENSMUSG00000070552 synonymous SNV ENSMUST00000094390:c.T612C:p.I204I 7qB4 NA NA chr7 55276756 GAGxATC A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119875 0.120436 0.995343 27 0 0 10.476999 0.363636 0.02 -0.096471 7 4 201 117 60 60 0 0 AA 4.195495 14 0 372 0 KEEP - Mrgprx1 NO AID_1 chr7 55277022 55277022 T C exonic Mrgprx1 nonsynonymous SNV NM_207540:c.A346G:p.I116V exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.A346G:p.I116V exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.A346G:p.I116V 7qB4 NA NA chr7 55277022 GGAxGCT T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 69 0 0 19.756851 0.321429 0.02 -0.254243 19 9 519 231 60 60 0 0 TT 8.025024 29 1 785 6 KEEP - Mrgprx1 NO AID_1 chr7 55454089 55454089 A G exonic Mrgprb4 synonymous SNV NM_205795:c.T460C:p.L154L exonic Mrgprb4 synonymous SNV uc009han.1:c.T460C:p.L154L exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.T460C:p.L154L 7qB4 NA NA chr7 55454089 ACAxTAG A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 43 1 0 9.702048 0.25 0.02 -0.149075 12 4 330 117 60 60 0 0 AA 6.31582 21 0 574 0 KEEP - Mrgprb4 NO AID_1 chr7 55454369 55454369 C T exonic Mrgprb4 synonymous SNV NM_205795:c.G180A:p.R60R exonic Mrgprb4 synonymous SNV uc009han.1:c.G180A:p.R60R exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.G180A:p.R60R 7qB4 NA NA chr7 55454369 ATTxCTA C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 55 0 0 8.863622 0.2 0.02 -0.184172 16 4 468 113 60 60 0 0 CC 7.512868 25 0 693 0 KEEP - Mrgprb4 YES AID_1 chr7 55644240 55644240 C T exonic Mrgprb8 synonymous SNV NM_207539:c.C288T:p.I96I exonic Mrgprb8 synonymous SNV uc009hao.2:c.C288T:p.I96I exonic ENSMUSG00000050870 synonymous SNV ENSMUST00000056676:c.C288T:p.I96I 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644240 CATxGAC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 172 1 0 59.074763 0.358209 0.02 1.108029 43 24 1132 666 60 60 0 0 CC 19.462916 74 1 1902 26 KEEP + Mrgprb8 YES AID_1 chr7 55644712 55644712 C T exonic Mrgprb8 nonsynonymous SNV NM_207539:c.C760T:p.P254S exonic Mrgprb8 nonsynonymous SNV uc009hao.2:c.C760T:p.P254S exonic ENSMUSG00000050870 nonsynonymous SNV ENSMUST00000056676:c.C760T:p.P254S 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644712 ATGxCTT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552849 0.552887 0.999931 64 0 0 25.362396 0.4 0.02 -0.219241 15 10 434 279 60 60 0 0 CC 7.519446 25 0 691 0 KEEP + Mrgprb8 YES AID_1 chr7 55702613 55702613 T C exonic Mrgprb1 nonsynonymous SNV NM_205810:c.A920G:p.K307R exonic Mrgprb1 nonsynonymous SNV uc009hap.1:c.A920G:p.K307R exonic ENSMUSG00000070547 nonsynonymous SNV ENSMUST00000094384:c.A920G:p.K307R 7qB4 NA NA chr7 55702613 AGCxTGA T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 136 0 0 22.197467 0.172414 0.02 1.284886 48 10 1368 290 60 60 0 0 TT 19.550963 65 0 1806 0 KEEP - Mrgprb1 NO AID_1 chr7 56133457 56133457 T A exonic E2f8 synonymous SNV NM_001013368:c.A306T:p.S102S exonic E2f8 synonymous SNV uc009haz.2:c.A306T:p.S102S exonic ENSMUSG00000046179 synonymous SNV ENSMUST00000058745:c.A306T:p.S102S 7qB4 NA NA chr7 56133457 TCCxGAT T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 173 0 0 45.433667 0.275362 0.02 1.18852 50 19 1414 540 60 60 0 0 TT 23.149536 77 0 2102 0 KEEP - E2f8 NO AID_1 chr7 56803423 56803423 T C exonic Nav2 synonymous SNV NM_175272:c.T3429C:p.S1143S exonic Nav2 synonymous SNV uc009hbm.2:c.T3429C:p.S1143S exonic ENSMUSG00000052512 synonymous SNV ENSMUST00000064395:c.T3429C:p.S1143S 7qB4 NA NA chr7 56803423 CAGxGGG T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 47 2 0 10.802589 0.25 0.02 -0.175358 15 5 413 133 60 60 0 0 TT 5.405568 18 0 465 0 KEEP + Nav2 NO AID_1 chr7 57484324 57484324 T G intronic Nell1 NA NA intronic Nell1 NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57484324 GTCxGCT T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139819 0.139832 0.999909 42 1 0 39.21628 1 0.02 -0.105225 0 12 0 335 0 60 0 0 TT 7.217961 24 0 656 0 KEEP + Nell1 NO AID_1 chr7 57855795 57855795 G A UTR3 4933405O20Rik NA NA UTR3 4933405O20Rik NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57855795 AGAxAGT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076843 0.077336 0.993634 24 0 0 29.58784 1 0.02 -0.078923 0 9 0 253 0 60 0 0 GG 3.609479 12 0 337 0 KEEP + 4933405O20Rik YES AID_1 chr7 58954328 58954328 A G intergenic "Slc17a6(dist=27832),Fancf(dist=161621)" NA NA intergenic "Slc17a6(dist=27832),AK195420(dist=48545)" NA NA intergenic "ENSMUSG00000030500(dist=27833),ENSMUSG00000078088(dist=47733)" NA NA 7qB5 "Score=0.932916;Name=No.87853,chr4:12160047" NA chr7 58954328 GAAxGTT A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 134 0 1 13.606409 1 0.02 1.295812 0 4 0 117 0 37 0 0 AA 14.437559 48 0 1345 0 KEEP NA Slc17a6 NO AID_1 chr7 59116908 59116908 G A exonic Fancf synonymous SNV NM_001115087:c.C717T:p.A239A exonic Fancf synonymous SNV uc012flg.1:c.C717T:p.A239A exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.C717T:p.A239A 7qB5 NA NA chr7 59116908 CTTxGCT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 114 4 0 141.686265 1 0.02 -0.385841 0 43 0 1212 0 60 0 0 GG 13.52681 45 0 1245 0 KEEP - Fancf YES AID_1 chr7 59117508 59117508 A G exonic Fancf synonymous SNV NM_001115087:c.T117C:p.R39R exonic Fancf synonymous SNV uc012flg.1:c.T117C:p.R39R exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.T117C:p.R39R 7qB5 NA NA chr7 59117508 ATAxCGC A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 90 1 0 119.869684 1 0.02 -0.324054 0 37 0 1023 0 60 0 0 AA 11.67874 43 1 1166 11 KEEP - Fancf NO AID_1 chr7 59117648 59117648 C T upstream Fancf NA NA UTR5 Gas2 NA NA UTR5 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59117648 CATxCCG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 67 0 0 76.055477 1 0.02 -0.259208 0 25 0 643 0 60 0 0 CC 11.067771 37 0 1022 0 KEEP + Fancf YES AID_1 chr7 59220735 59220735 G A intronic Gas2 NA NA UTR3 Gas2 NA NA UTR3 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59220735 TGAxCCT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999998 64 0 0 40.478751 1 0.02 -0.184041 0 13 0 343 0 70 0 0 GG 10.223343 34 0 926 0 KEEP + Gas2 YES AID_1 chr7 63027927 63027927 C G exonic Siglech nonsynonymous SNV NM_178706:c.C913G:p.H305D exonic Siglech nonsynonymous SNV uc009hdb.2:c.C865G:p.H289D exonic ENSMUSG00000051504 nonsynonymous SNV ENSMUST00000094360:c.C865G:p.H289D 7qB5 NA NA chr7 63027927 GCAxACG C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139815 0.139832 0.999879 41 0 0 34.266051 1 0.02 -0.105246 0 10 0 295 0 60 0 0 CC 6.617305 22 0 614 0 KEEP + Siglech NO AID_1 chr7 63068956 63068956 A T intronic Tubgcp5 NA NA intronic Tubgcp5 NA NA intronic ENSMUSG00000033790 NA NA 7qB5 NA NA chr7 63068956 TGCxGGC A T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 97 2 0 89.665178 1 0.02 -0.23678 0 27 0 768 0 60 0 0 AA 14.738777 49 0 1371 0 KEEP + Tubgcp5 NO AID_1 chr7 63147515 63147515 G C intronic Cyfip1 NA NA exonic Cyfip1 nonsynonymous SNV uc009hdj.1:c.G1267C:p.G423R exonic ENSMUSG00000030447 nonsynonymous SNV ENSMUST00000168271:c.G1267C:p.G423R 7qB5 NA NA chr7 63147515 ATCxGAG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999999 64 3 0 49.37377 1 0.02 -0.175185 0 17 0 413 0 60 0 0 GG 10.824513 36 0 965 0 KEEP + Cyfip1 NO AID_1 chr7 63148642 63148642 C T intronic Cyfip1 NA NA intronic Cyfip1 NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63148642 CTCxCTG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019833 0.019982 0.99254 16 0 0 13.205805 1 0.02 -0.035077 0 4 0 113 0 60 0 0 CC 2.70719 9 0 252 0 KEEP + Cyfip1 YES AID_1 chr7 63181924 63181924 G A intronic Cyfip1 NA NA intronic "Cyfip1,Shyc" NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63181924 GGGxGGG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 49 0 0 49.056328 0.944444 0.02 -0.200272 1 17 29 428 29 70 1 0 GG 6.015121 20 0 549 0 KEEP + Cyfip1 YES AID_1 chr7 63327733 63327733 A G exonic Herc2 synonymous SNV NM_010418:c.A258G:p.E86E exonic "Herc2,rjs" synonymous SNV uc009hdw.1:c.A258G:p.E86E exonic ENSMUSG00000030451 synonymous SNV ENSMUST00000041015:c.A144G:p.E48E 7qB5 NA NA chr7 63327733 AGAxGAG A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322803 0.322807 0.999988 56 0 0 60.070502 1 0.02 -0.15781 0 18 0 515 0 60 0 0 AA 8.121873 27 0 763 0 KEEP + Herc2 NO AID_1 chr7 63440089 63440089 T C intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440089 TGGxTGT T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139814 0.139832 0.999869 36 0 0 38.8048 1 0.02 -0.105145 0 12 0 331 0 60 0 0 TT 6.315743 21 0 572 0 KEEP + Herc2 NO AID_1 chr7 63440091 63440091 G A intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440091 GTTxTGA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12042 0.120436 0.999863 34 0 0 34.437668 1 0.02 -0.096441 0 11 0 292 0 60 0 0 GG 6.015478 20 0 556 0 KEEP + Herc2 YES AID_1 chr7 63585644 63585644 G A intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63585644 ATTxAGC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 34 0 0 35.840297 1 0.02 -0.113996 0 11 0 306 0 60 0 0 GG 5.113871 17 0 485 0 KEEP + Oca2 YES AID_1 chr7 63612621 63612621 C T intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63612621 TTAxTCG C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196298 0.196312 0.999931 53 2 0 43.294614 1 0.02 -0.122776 0 13 0 371 0 60 0 0 CC 7.520355 25 0 710 0 KEEP + Oca2 YES AID_1 chr7 64677117 64677117 G A exonic Gabra5 synonymous SNV NM_176942:c.C720T:p.S240S exonic Gabra5 synonymous SNV uc009heb.1:c.C720T:p.S240S exonic ENSMUSG00000055078 synonymous SNV ENSMUST00000068456:c.C720T:p.S240S 7qC NA NA chr7 64677117 TGTxCTG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 55 0 0 51.521312 1 0.02 -0.140297 0 16 0 439 0 60 0 0 GG 6.919216 23 0 662 0 KEEP - Gabra5 YES AID_1 chr7 64708281 64708281 C T intronic Gabra5 NA NA intronic Gabra5 NA NA intronic ENSMUSG00000055078 NA NA 7qC NA NA chr7 64708281 ACAxGCC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162447 0.162467 0.999879 37 3 0 27.259204 1 0.02 -0.113794 0 9 0 230 0 60 0 0 CC 6.614702 22 0 581 0 KEEP - Gabra5 YES AID_1 chr7 77504788 77504788 C A exonic Nr2f2 nonsynonymous SNV NM_009697:c.G428T:p.G143V exonic Nr2f2 nonsynonymous SNV uc009hni.1:c.G428T:p.G143V exonic ENSMUSG00000030551 nonsynonymous SNV ENSMUST00000032768:c.G428T:p.G143V 7qD1 NA NA chr7 77504788 ATGxCCA C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 147 1 0 26.319514 0.289474 0.02 -0.342013 27 11 778 310 60 60 0 0 CC 24.66256 82 0 2251 0 KEEP - Nr2f2 NO AID_1 chr7 88169926 88169926 C A exonic Zfp592 nonsynonymous SNV NM_178707:c.C1751A:p.A584D exonic Zfp592 nonsynonymous SNV uc009ibp.2:c.C1751A:p.A584D exonic ENSMUSG00000005621 nonsynonymous SNV ENSMUST00000005761:c.C1751A:p.A584D 7qD3 NA NA chr7 88169926 CGGxCAG C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 73 0 0 14.257189 0.3 0.02 -0.175385 14 6 397 167 60 60 0 0 CC 12.33093 41 0 1128 0 KEEP + Zfp592 NO AID_1 chr7 99774247 99774247 G C intronic Ankrd42 NA NA intronic Ankrd42 NA NA intronic ENSMUSG00000041343 NA NA 7qE1 NA NA chr7 99774247 TATxGTG G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 101 0 0 26.231566 0.275 0.02 -0.350808 29 11 860 312 60 60 0 0 GG 14.131966 47 0 1338 0 KEEP - Ankrd42 NO AID_1 chr8 105197937 105197937 T A exonic Cdh11 nonsynonymous SNV NM_009866:c.A298T:p.I100F exonic Cdh11 nonsynonymous SNV uc009mzu.1:c.A298T:p.I100F exonic ENSMUSG00000031673 nonsynonymous SNV ENSMUST00000075190:c.A298T:p.I100F 8qD2 "Score=0.936759;Name=No.103939,chr8:19990962" NA chr8 105197937 AAAxGGT T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 144 3 4 10.604489 0.103448 0.02 1.267753 52 6 1422 161 60 40 0 0 TT 18.345633 61 0 1658 0 KEEP - Cdh11 NO AID_1 chr8 107860406 107860406 G A exonic Fhod1 nonsynonymous SNV NM_177699:c.C1207T:p.P403S exonic Fhod1 nonsynonymous SNV uc009nct.2:c.C1207T:p.P403S exonic ENSMUSG00000014778 nonsynonymous SNV ENSMUST00000014922:c.C1207T:p.P403S 8qD3 NA NA chr8 107860406 TAGxCGG G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 149 0 0 51.571073 0.314286 0.02 1.179717 48 22 1375 600 60 60 0 0 GG 17.401942 58 0 1569 0 KEEP - Fhod1 YES AID_1 chr8 129116505 129116505 G A exonic Irf2bp2 stopgain SNV NM_001164598:c.C832T:p.Q278X exonic Irf2bp2 stopgain SNV uc009nyw.2:c.C832T:p.Q278X exonic ENSMUSG00000051495 stopgain SNV ENSMUST00000054960:c.C832T:p.Q278X 8qE2 NA NA chr8 129116505 CCTxCTC G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 52 0 0 16.514177 0.388889 0.02 -0.15781 11 7 302 184 60 60 0 0 GG 8.416235 28 0 748 0 KEEP - Irf2bp2 YES AID_1 chr8 129116506 129116506 C T exonic Irf2bp2 synonymous SNV NM_001164598:c.G831A:p.E277E exonic Irf2bp2 synonymous SNV uc009nyw.2:c.G831A:p.E277E exonic ENSMUSG00000051495 synonymous SNV ENSMUST00000054960:c.G831A:p.E277E 8qE2 NA NA chr8 129116506 CTGxTCC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.38739 0.387407 0.999957 51 0 0 29.82675 0.578947 0.02 -0.175378 8 11 232 302 60 60 0 0 CC 7.754887 26 0 705 0 KEEP - Irf2bp2 YES AID_1 chr8 19687857 19687857 G A intergenic "Defb7(dist=190082),Gm21119(dist=41719)" NA NA ncRNA_exonic AK134636 NA NA exonic ENSMUSG00000087153 nonsynonymous SNV ENSMUST00000127799:c.G23A:p.C8Y 8qA1.3 "Score=0.984202;Name=No.103897,chr8:19917208" NA chr8 19687857 TCTxCAT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 233 0 40 8.07926 0.0625 0.02 0.895849 75 5 2184 138 60 39 0 0 GG 27.073141 90 0 2553 0 KEEP + Defb7 YES AID_1 chr8 20020279 20020279 G T ncRNA_exonic 2610005L07Rik NA NA UTR5 Gm10348 NA NA ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020279 TTTxCCC G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 638 5 133 11.749256 0.043243 0.02 3.253014 177 8 5111 222 60 57 0 0 GG 87.495497 291 0 8138 0 KEEP - 2610005L07Rik NO AID_1 chr8 56201551 56201551 C T intergenic "Gpm6a(dist=55320),NONE(dist=NONE)" NA NA intergenic "Gpm6a(dist=55320),NONE(dist=NONE)" NA NA intergenic "ENSMUSG00000031517(dist=55320),ENSMUSG00000092881(dist=1760159)" NA NA 8qB1.3 "Score=0.987647;Name=No.104149,chr8:56203631" NA chr8 56201551 GACxGAC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1023 2 486 18.980582 0.047244 0.02 6.348704 242 12 6669 342 42 35 0 0 CC 112.936033 376 0 9926 0 KEEP NA Gpm6a YES AID_1 chr8 56201592 56201592 C T intergenic "Gpm6a(dist=55361),NONE(dist=NONE)" NA NA intergenic "Gpm6a(dist=55361),NONE(dist=NONE)" NA NA intergenic "ENSMUSG00000031517(dist=55361),ENSMUSG00000092881(dist=1760118)" NA NA 8qB1.3 "Score=0.987647;Name=No.104149,chr8:56203631" NA chr8 56201592 CTTxTCT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1763 10 427 19.928615 0.02627 0.02 13.515869 556 15 16356 428 42 37 0 0 CC 188.067507 628 1 17927 7 KEEP NA Gpm6a YES AID_1 chr8 66683976 66683976 C T intronic Tll1 NA NA intronic Tll1 NA NA intronic ENSMUSG00000053626 NA NA 8qB3.1 NA NA chr8 66683976 CAGxAGC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 180 0 0 23.219746 0.189655 0.02 1.07998 47 11 1331 302 60 60 0 0 CC 25.22518 84 0 2293 0 KEEP - Tll1 YES AID_1 chr8 82575430 82575430 G T exonic Hhip nonsynonymous SNV NM_020259:c.C369A:p.F123L exonic Hhip nonsynonymous SNV uc009mix.2:c.C369A:p.F123L exonic ENSMUSG00000064325 nonsynonymous SNV ENSMUST00000079038:c.C369A:p.F123L 8qC2 NA NA chr8 82575430 GTAxAAG G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 153 2 0 8.599582 0.086207 0.02 1.088668 53 5 1565 136 60 60 0 0 GG 21.961084 73 0 2102 0 KEEP - Hhip NO AID_1 chr8 87445119 87445119 A G exonic Mast1 synonymous SNV NM_019945:c.T1524C:p.T508T exonic Mast1 synonymous SNV uc009mof.1:c.T1524C:p.T508T exonic ENSMUSG00000053693 synonymous SNV ENSMUST00000074363:c.T1524C:p.T508T 8qC3 NA NA chr8 87445119 GGAxGTA A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 116 0 0 34.008193 0.28 0.02 -0.438342 36 14 1022 402 60 60 0 0 AA 18.348241 61 0 1704 0 KEEP + Mast1 NO AID_1 chr8 87501374 87501374 C A exonic Junb nonsynonymous SNV NM_008416:c.G955T:p.A319S exonic Junb nonsynonymous SNV uc012ghn.1:c.G955T:p.A319S exonic ENSMUSG00000052837 nonsynonymous SNV ENSMUST00000064922:c.G955T:p.A319S 8qC3 NA NA chr8 87501374 GCGxCAC C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 184 0 0 26.308903 0.190476 0.02 1.116418 51 12 1470 339 60 60 0 0 CC 27.670573 92 0 2530 0 KEEP - Junb NO AID_1 chr8 87501381 87501381 C T exonic Junb synonymous SNV NM_008416:c.G948A:p.E316E exonic Junb synonymous SNV uc012ghn.1:c.G948A:p.E316E exonic ENSMUSG00000052837 synonymous SNV ENSMUST00000064922:c.G948A:p.E316E 8qC3 NA NA chr8 87501381 TTGxTCC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 194 0 0 25.842245 0.181818 0.02 1.090187 54 12 1547 337 60 60 0 0 CC 27.644797 92 0 2524 0 KEEP - Junb YES AID_1 chr8 87501477 87501477 C T exonic Junb synonymous SNV NM_008416:c.G852A:p.K284K exonic Junb synonymous SNV uc009mop.1:c.G840A:p.K280K exonic ENSMUSG00000052837 synonymous SNV ENSMUST00000064922:c.G852A:p.K284K 8qC3 NA NA chr8 87501477 CCGxTTC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 199 5 0 37.707882 0.25 0.02 1.090194 51 17 1465 462 60 60 0 0 CC 27.98954 94 0 2467 0 KEEP - Junb YES AID_1 chr8 87501741 87501741 C A exonic Junb synonymous SNV NM_008416:c.G588T:p.G196G exonic Junb synonymous SNV uc009mop.1:c.G576T:p.G192G exonic ENSMUSG00000052837 synonymous SNV ENSMUST00000064922:c.G588T:p.G196G 8qC3 NA NA chr8 87501741 GGTxCCG C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490523 0.490544 0.999957 58 0 0 12.066124 0.272727 0.02 -0.201511 16 6 443 148 60 60 0 0 CC 7.81414 26 0 707 0 KEEP - Junb NO AID_1 chr8 87617781 87617781 A G intronic Man2b1 NA NA intronic Man2b1 NA NA intronic ENSMUSG00000005142 NA NA 8qC3 NA NA chr8 87617781 GGGxTGC A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641289 0.641347 0.999909 54 0 0 8.095847 0.269231 0.02 -0.240739 19 7 456 113 60 60 0 0 AA 7.137251 24 0 576 0 KEEP + Man2b1 NO AID_1 chr8 91556623 91556623 G A exonic Sall1 nonsynonymous SNV NM_021390:c.C751T:p.R251C exonic Sall1 nonsynonymous SNV uc009msa.2:c.C751T:p.R251C exonic ENSMUSG00000031665 nonsynonymous SNV ENSMUST00000034090:c.C751T:p.R251C 8qC3 NA NA chr8 91556623 GACxTAT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 80 0 0 16.764159 0.266667 0.02 -0.262932 22 8 559 205 60 60 0 0 GG 13.51765 45 0 1091 0 KEEP - Sall1 YES AID_1 chr8 95727186 95727186 G T exonic Ces1e stopgain SNV NM_133660:c.C1367A:p.S456X exonic Ces1e stopgain SNV uc009muo.2:c.C1367A:p.S456X exonic ENSMUSG00000061959 stopgain SNV ENSMUST00000034173:c.C1367A:p.S456X 8qC5 NA NA chr8 95727186 TCTxACG G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 87 0 0 28.361326 0.292683 0.02 -0.359569 29 12 856 334 60 60 0 0 GG 9.625829 32 0 911 0 KEEP - Ces1e NO AID_1 chr8_random 690820 690820 G A intergenic "Tsnax(dist=89305),NONE(dist=NONE)" NA NA intergenic "Tsnax(dist=89305),AK029792(dist=56894)" NA NA downstream ENSMUSG00000074455 NA NA NA "Score=0.989584;Name=No.105235,chr8_random:819725" NA chr8_random 690820 TTAxACT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1320 2 213 30.207253 0.047506 0.02 9.959193 401 20 11789 555 46 40 0 0 GG 192.514543 640 0 18378 0 KEEP NA Tsnax YES AID_1 chr9 102622640 102622640 G T exonic Amotl2 nonsynonymous SNV NM_019764:c.G168T:p.E56D exonic Amotl2 nonsynonymous SNV uc009rfx.1:c.G168T:p.E56D exonic ENSMUSG00000032531 nonsynonymous SNV ENSMUST00000035121:c.G168T:p.E56D 9qF1 NA NA chr9 102622640 GGAxATC G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 66 0 0 23.539319 0.37037 0.02 -0.236766 17 10 498 265 60 60 0 0 GG 10.829646 36 0 1030 0 KEEP + Amotl2 NO AID_1 chr9 115869498 115869498 C T exonic Gadl1 synonymous SNV NM_028638:c.C753T:p.C251C exonic Gadl1 synonymous SNV uc009ryr.2:c.C753T:p.C251C exonic ENSMUSG00000056880 synonymous SNV ENSMUST00000121770:c.C753T:p.C251C 9qF3 NA NA chr9 115869498 CTGxGCC C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 211 3 0 246.421096 0.987179 0.02 1.003255 1 77 7 2112 60 60 0 0 CC 31.789491 106 0 2696 0 KEEP + Gadl1 YES AID_1 chr9 119395502 119395502 G T exonic Scn5a nonsynonymous SNV NM_001253860:c.C5257A:p.L1753I exonic Scn5a nonsynonymous SNV uc009sbc.1:c.C5257A:p.L1753I exonic ENSMUSG00000032511 nonsynonymous SNV ENSMUST00000065196:c.C5254A:p.L1752I 9qF3 NA NA chr9 119395502 AGAxGAT G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 163 1 0 37.254295 0.268657 0.02 1.108036 49 18 1414 456 60 60 0 0 GG 24.649164 82 0 2293 0 KEEP - Scn5a NO AID_1 chr9 119960758 119960758 C G exonic Cx3cr1 nonsynonymous SNV NM_009987:c.G695C:p.R232T exonic Cx3cr1 nonsynonymous SNV uc009sbz.1:c.G695C:p.R232T exonic ENSMUSG00000052336 nonsynonymous SNV ENSMUST00000064165:c.G695C:p.R232T 9qF4 NA NA chr9 119960758 AGTxTGA C G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 71 0 0 20.042522 0.285714 0.02 -0.245572 20 8 590 235 60 60 0 0 CC 9.325645 31 0 887 0 KEEP - Cx3cr1 NO AID_1 chr9 123573856 123573856 C A intronic Slc6a20a NA NA intronic Slc6a20a NA NA intronic ENSMUSG00000036814 NA NA 9qF4 NA NA chr9 123573856 TTAxCCG C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162452 0.162467 0.999909 42 2 1 15.163826 0.461538 0.02 -0.113999 7 6 205 162 60 60 0 0 CC 7.218401 24 0 663 0 KEEP - Slc6a20a NO AID_1 chr9 14397206 14397206 G A exonic Amotl1 synonymous SNV NM_001081395:c.C1149T:p.G383G exonic Amotl1 synonymous SNV uc009oep.1:c.C1149T:p.G383G exonic ENSMUSG00000013076 synonymous SNV ENSMUST00000013220:c.C1149T:p.G383G 9qA2 NA NA chr9 14397206 GACxCCA G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.999859 37 0 0 12.746031 0.416667 0.02 -0.105204 7 5 183 139 60 60 0 0 GG 5.404802 18 0 437 0 KEEP - Amotl1 YES AID_1 chr9 18941717 18941717 T G exonic Olfr837 synonymous SNV NM_146565:c.T279G:p.T93T exonic Olfr837 synonymous SNV uc009ohe.2:c.T279G:p.T93T ncRNA_exonic ENSMUSG00000059731 NA NA 9qA2 NA NA chr9 18941717 CACxTTA T G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 193 4 1 47.390738 0.277108 0.02 0.959235 60 23 1715 577 60 60 0 0 TT 24.961318 83 0 2298 0 KEEP + Olfr837 NO AID_1 chr9 45478336 45478336 G A exonic Dscaml1 nonsynonymous SNV NM_001081270:c.G1369A:p.A457T exonic Dscaml1 nonsynonymous SNV uc009pfz.1:c.G1369A:p.A457T exonic ENSMUSG00000032087 nonsynonymous SNV ENSMUST00000034592:c.G1369A:p.A457T 9qA5.2 NA NA chr9 45478336 TTTxCCA G A 1-AID-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.851861 0.851984 0.999855 85 2 0 22.895841 0.27027 0.02 -0.33324 27 10 775 275 60 70 0 0 GG 10.82658 36 0 996 0 KEEP + Dscaml1 YES AID_1 chr9 58136726 58136726 T A splicing Loxl1(NM_010729:exon8:c.1818-2A>T) NA NA splicing Loxl1(uc009pwv.2:exon8:c.1818-2A>T) NA NA splicing "ENSMUSG00000032334(ENSMUST00000061799:exon8:c.1818-2A>T,ENSMUST00000064417:exon11:c.1640-2A>T,ENSMUST00000167425:exon5:c.421-2A>T)" NA NA 9qB NA NA chr9 58136726 ACCxAAG T A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 166 0 0 42.725213 0.285714 0.02 1.142982 45 18 1237 505 60 60 0 0 TT 21.650004 72 0 1937 0 KEEP - Loxl1 NO AID_1 chr9 62993163 62993163 G C exonic Skor1 nonsynonymous SNV NM_001163755:c.C1246G:p.P416A exonic Skor1 nonsynonymous SNV uc009qat.2:c.C1330G:p.P444A exonic ENSMUSG00000022245 nonsynonymous SNV ENSMUST00000055281:c.C1330G:p.P444A 9qC NA NA chr9 62993163 GGGxCAA G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 47 2 0 6.493142 0.142857 0.02 -0.184173 18 3 523 88 60 60 0 0 GG 6.012172 20 0 535 0 KEEP - Skor1 NO AID_1 chr9 77602709 77602709 G T exonic Gclc synonymous SNV NM_010295:c.G93T:p.L31L exonic Gclc synonymous SNV uc009qtm.1:c.G93T:p.L31L exonic ENSMUSG00000032350 synonymous SNV ENSMUST00000034905:c.G93T:p.L31L 9qE1 NA NA chr9 77602709 CCTxCAC G T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.195062 0.196312 0.993634 32 2 0 9.87124 0.285714 0.02 -0.122785 10 4 294 116 60 60 0 0 GG 3.604912 12 0 322 0 KEEP + Gclc NO AID_1 chr9 98773442 98773442 T C intergenic "2410012M07Rik(dist=6443),7420426K07Rik(dist=30096)" NA NA intergenic "2410012M07Rik(dist=6443),7420426K07Rik(dist=30096)" NA NA intergenic "ENSMUSG00000090470(dist=6443),ENSMUSG00000074123(dist=30096)" NA NA 9qE3.3 "Score=0.982481;Name=No.84462,chr3:104625932" NA chr9 98773442 CCTxTTC T C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 104 0 1 10.787523 0.121951 0.02 -0.359528 36 5 1025 150 60 60 0 0 TT 13.234457 44 0 1224 0 KEEP NA 2410012M07Rik NO AID_1 chrX 132123553 132123553 C T exonic Nxf7 nonsynonymous SNV NM_130888:c.G295A:p.A99T exonic Nxf7 nonsynonymous SNV uc012hor.1:c.G25A:p.A9T exonic ENSMUSG00000031410 nonsynonymous SNV ENSMUST00000033784:c.G295A:p.A99T XqF1 NA NA chrX 132123553 GCGxCGT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 269 0 0 91.775516 0.523077 0.02 1.214819 31 34 869 951 60 60 0 0 CC 47.206181 157 0 4354 0 KEEP - Nxf7 YES AID_1 chrX 138157979 138157979 C A exonic Irs4 nonsynonymous SNV NM_010572:c.G1763T:p.R588I exonic Irs4 nonsynonymous SNV uc009ulp.1:c.G1763T:p.R588I exonic ENSMUSG00000054667 nonsynonymous SNV ENSMUST00000067841:c.G1763T:p.R588I XqF2 NA NA chrX 138157979 GATxTTT C A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 306 0 0 39.924193 0.206522 0.02 0.879666 73 19 2125 512 60 60 0 0 CC 44.796003 149 0 4205 0 KEEP - Irs4 NO AID_1 chrX 149344294 149344294 C T intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA ncRNA_intronic ENSMUSG00000083440 NA NA XqF3 NA NA chrX 149344294 CTGxTGT C T 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 305 6 108 114.1884 0.530864 0.02 1.083309 38 43 1076 1180 60 60 0 0 CC 42.399266 141 0 3913 0 KEEP NA Gpr143 YES AID_1 chrX 24140520 24140520 A G exonic Gm4297 synonymous SNV NM_001100446:c.T339C:p.T113T exonic Gm4297 synonymous SNV uc009svb.1:c.T339C:p.T113T exonic ENSMUSG00000081218 synonymous SNV ENSMUST00000119285:c.T339C:p.T113T XqA2 "Score=0.978209;Name=No.108458,chrX:26142762" NA chrX 24140520 ATGxGTT A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 595 5 245 109.054748 0.470588 0.02 1.048084 45 40 1294 1155 55 34 0 0 AA 81.337418 280 1 7826 27 KEEP - Gm4297 NO AID_1 chrX 38646604 38646604 A G intergenic "Cypt14(dist=1429823),Gria3(dist=107874)" NA NA intergenic "Cypt14(dist=1429823),Gria3(dist=107427)" NA NA downstream ENSMUSG00000081880 NA NA XqA3.3 "Score=0.937075;Name=No.105006,chr8:78235369" NA chrX 38646604 TCAxAAG A G 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 163 5 11 18.374296 0.177778 0.02 1.3572 37 8 1060 237 60 37 0 0 AA 15.305636 51 0 1400 0 KEEP NA Cypt14 NO AID_1 chrX 71491415 71491415 G A exonic Flna nonsynonymous SNV NM_010227:c.C361T:p.L121F exonic Flna nonsynonymous SNV uc009tny.1:c.C361T:p.L121F exonic ENSMUSG00000031328 nonsynonymous SNV ENSMUST00000033699:c.C361T:p.L121F XqA7.3 NA NA chrX 71491415 CGAxCTT G A 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 40 0 0 10.32882 0.571429 0.02 -0.06989 3 4 90 105 60 60 0 0 GG 8.587054 29 0 752 0 KEEP - Flna YES AID_1 chrX 93119963 93119963 G C exonic Zc3h12b nonsynonymous SNV NM_001034907:c.G925C:p.E309Q exonic Zc3h12b nonsynonymous SNV uc009tua.1:c.G925C:p.E309Q exonic ENSMUSG00000035045 nonsynonymous SNV ENSMUST00000082183:c.G925C:p.E309Q XqC3 NA NA chrX 93119963 CCAxAAT G C 1-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 73 0 0 26.291487 0.555556 0.02 -0.157593 8 10 214 269 60 60 0 0 GG 12.635122 42 0 1210 0 KEEP + Zc3h12b NO AID_2 chr10 11329904 11329904 T G intergenic "Epm2a(dist=152629),Utrn(dist=772082)" NA NA intergenic "Epm2a(dist=152629),Utrn(dist=772082)" NA NA downstream ENSMUSG00000045455 NA NA 10qA1 "Score=0.99901;Name=No.11918,chrX:131071797" NA chr10 11329904 AACxTCT T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612333 0.612407 0.999879 103 1 41 8.292807 0.148148 0.02 -0.236788 23 4 663 113 46 46 0 0 TT 15.039799 50 0 1400 0 KEEP NA Epm2a NO AID_2 chr10 117146792 117146792 G A exonic Mdm2 synonymous SNV NM_010786:c.C45T:p.S15S exonic Mdm2 synonymous SNV uc007hdm.1:c.C45T:p.S15S exonic ENSMUSG00000020184 synonymous SNV ENSMUST00000020408:c.C45T:p.S15S 10qD2 NA NA chr10 117146792 GGTxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 179 2 0 44.45548 0.266667 0.02 0.930863 55 20 1603 538 60 60 0 0 GG 20.112131 67 0 1837 0 KEEP - Mdm2 YES AID_2 chr10 128063496 128063496 C T intronic Rps26 NA NA intronic Rps26 NA NA intronic ENSMUSG00000025362 NA NA 10qD3 NA NA chr10 128063496 GTAxCCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 346 4 0 10.329573 0.047297 0.02 1.896784 141 7 4038 192 60 60 0 0 CC 36.090649 120 0 3283 0 KEEP - Rps26 YES AID_2 chr10 128254018 128254018 G T exonic Dnajc14 nonsynonymous SNV NM_028873:c.G1803T:p.W601C exonic Dnajc14 nonsynonymous SNV uc007hol.1:c.G1803T:p.W601C exonic ENSMUSG00000025354 nonsynonymous SNV ENSMUST00000026410:c.G1803T:p.W601C 10qD3 NA NA chr10 128254018 GTGxGCT G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 127 0 0 24.297898 0.203704 0.02 1.204846 43 11 1255 309 60 60 0 0 GG 15.921962 53 0 1467 0 KEEP + Dnajc14 NO AID_2 chr10 17443886 17443886 G A exonic Cited2 synonymous SNV NM_010828:c.G135A:p.Q45Q exonic Cited2 synonymous SNV uc007elt.2:c.G135A:p.Q45Q exonic ENSMUSG00000039910 synonymous SNV ENSMUST00000105529:c.G135A:p.Q45Q 10qA2 NA NA chr10 17443886 CCAxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693573 0.693668 0.999863 52 0 0 7.806954 0.133333 0.02 -0.261744 26 4 739 110 60 60 0 0 GG 6.014613 20 0 552 0 KEEP + Cited2 YES AID_2 chr10 17443914 17443914 C T exonic Cited2 nonsynonymous SNV NM_010828:c.C163T:p.H55Y exonic Cited2 nonsynonymous SNV uc007elt.2:c.C163T:p.H55Y exonic ENSMUSG00000039910 nonsynonymous SNV ENSMUST00000105529:c.C163T:p.H55Y 10qA2 NA NA chr10 17443914 GAGxACA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760877 0.760887 0.999988 63 0 0 9.204964 0.151515 0.02 -0.288404 28 5 791 129 60 60 0 0 CC 8.120984 27 0 748 0 KEEP + Cited2 YES AID_2 chr10 17444089 17444089 G T exonic Cited2 nonsynonymous SNV NM_010828:c.G338T:p.S113I exonic Cited2 nonsynonymous SNV uc007elt.2:c.G338T:p.S113I exonic ENSMUSG00000039910 nonsynonymous SNV ENSMUST00000105529:c.G338T:p.S113I 10qA2 NA NA chr10 17444089 CCAxCAT G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 379 0 0 54.021362 0.154286 0.02 3.5423 148 27 4348 738 60 60 0 0 GG 40.565911 135 0 3702 0 KEEP + Cited2 NO AID_2 chr10 17444106 17444106 C T exonic Cited2 nonsynonymous SNV NM_010828:c.C355T:p.L119F exonic Cited2 nonsynonymous SNV uc007elt.2:c.C355T:p.L119F exonic ENSMUSG00000039910 nonsynonymous SNV ENSMUST00000105529:c.C355T:p.L119F 10qA2 NA NA chr10 17444106 AAGxTCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 425 2 0 92.929171 0.21608 0.02 3.331843 156 43 4570 1175 60 60 0 0 CC 42.029409 140 0 3835 0 KEEP + Cited2 YES AID_2 chr10 21714771 21714771 G A splicing "Sgk1(NM_001161845:exon4:c.356-1G>A,NM_001161849:exon2:c.35-1G>A,NM_001161850:exon2:c.119-1G>A,NM_011361:exon2:c.77-1G>A)" NA NA splicing "Sgk1(uc007eov.2:exon4:c.356-1G>A,uc011xbh.1:exon2:c.35-1G>A,uc007eow.2:exon2:c.119-1G>A,uc007eox.2:exon2:c.77-1G>A)" NA NA splicing "ENSMUSG00000019970(ENSMUST00000120509:exon4:c.356-1G>A,ENSMUST00000100036:exon2:c.35-1G>A,ENSMUST00000150089:exon2:c.35-1G>A,ENSMUST00000092673:exon2:c.119-1G>A,ENSMUST00000020145:exon2:c.77-1G>A)" NA NA 10qA3 NA NA chr10 21714771 ATAxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 166 0 0 31.981445 0.194444 0.02 1.162039 58 14 1735 407 60 60 0 0 GG 16.544846 55 0 1565 0 KEEP + Sgk1 YES AID_2 chr10 21714772 21714772 C T exonic Sgk1 nonsynonymous SNV NM_001161849:c.C35T:p.A12V exonic Sgk1 nonsynonymous SNV uc007eow.2:c.C119T:p.A40V exonic ENSMUSG00000019970 nonsynonymous SNV ENSMUST00000020145:c.C77T:p.A26V 10qA3 NA NA chr10 21714772 TAGxTTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 167 0 0 29.290678 0.191781 0.02 1.153342 59 14 1715 381 60 60 0 0 CC 16.542746 55 0 1537 0 KEEP + Sgk1 YES AID_2 chr10 21714838 21714838 C T exonic Sgk1 nonsynonymous SNV NM_001161847:c.C62T:p.A21V exonic Sgk1 nonsynonymous SNV uc007eow.2:c.C185T:p.A62V exonic ENSMUSG00000019970 nonsynonymous SNV ENSMUST00000124350:c.C62T:p.A21V 10qA3 NA NA chr10 21714838 ATGxATG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 153 0 0 27.780078 0.209677 0.02 1.000982 49 13 1450 354 70 60 0 0 CC 15.342372 51 0 1462 0 KEEP + Sgk1 YES AID_2 chr10 21714859 21714859 G A intronic Sgk1 NA NA intronic Sgk1 NA NA intronic ENSMUSG00000019970 NA NA 10qA3 NA NA chr10 21714859 TGGxTTA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 121 0 0 13.344378 0.127273 0.02 1.151557 48 7 1350 191 70 60 0 0 GG 12.319977 41 0 1090 0 KEEP + Sgk1 YES AID_2 chr10 21715329 21715329 C T exonic Sgk1 nonsynonymous SNV NM_001161847:c.C121T:p.L41F exonic Sgk1 nonsynonymous SNV uc007eow.2:c.C244T:p.L82F exonic ENSMUSG00000019970 nonsynonymous SNV ENSMUST00000124350:c.C121T:p.L41F 10qA3 NA NA chr10 21715329 GAGxTTA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693593 0.693668 0.999892 75 4 0 13.646354 0.206897 0.02 -0.262914 23 6 652 172 60 60 0 0 CC 6.889217 23 0 625 0 KEEP + Sgk1 YES AID_2 chr10 21716423 21716423 C T exonic Sgk1 nonsynonymous SNV NM_001161847:c.C527T:p.A176V exonic Sgk1 nonsynonymous SNV uc007eow.2:c.C650T:p.A217V exonic ENSMUSG00000019970 nonsynonymous SNV ENSMUST00000124350:c.C527T:p.A176V 10qA3 NA NA chr10 21716423 ACGxAGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 145 0 0 8.244104 0.076923 0.02 1.02728 60 5 1781 135 60 60 0 0 CC 16.519021 55 0 1552 0 KEEP + Sgk1 YES AID_2 chr10 21716769 21716769 C A intronic Sgk1 NA NA intronic Sgk1 NA NA intronic ENSMUSG00000019970 NA NA 10qA3 NA NA chr10 21716769 TAAxTAC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 210 1 0 28.149464 0.16092 0.02 1.022102 73 14 2110 381 60 60 0 0 CC 24.062493 80 0 2233 0 KEEP + Sgk1 NO AID_2 chr10 21716772 21716772 C T intronic Sgk1 NA NA intronic Sgk1 NA NA intronic ENSMUSG00000019970 NA NA 10qA3 NA NA chr10 21716772 CTAxTTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 208 0 0 29.795913 0.162791 0.02 0.932257 72 14 2082 397 60 60 0 0 CC 23.760848 79 0 2198 0 KEEP + Sgk1 YES AID_2 chr10 24315535 24315535 C G exonic Ctgf nonsynonymous SNV NM_010217:c.C4G:p.L2V exonic Ctgf nonsynonymous SNV uc011xbr.1:c.C4G:p.L2V exonic ENSMUSG00000019997 nonsynonymous SNV ENSMUST00000020171:c.C4G:p.L2V 10qA4 NA NA chr10 24315535 ATGxTCG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 58 0 0 12.13059 0.263158 0.02 -0.184176 14 5 415 145 60 60 0 0 CC 6.015979 20 0 561 0 KEEP - Ctgf NO AID_2 chr10 24315587 24315587 G A exonic Ctgf nonsynonymous SNV NM_010217:c.G56A:p.C19Y exonic Ctgf nonsynonymous SNV uc011xbr.1:c.G56A:p.C19Y exonic ENSMUSG00000019997 nonsynonymous SNV ENSMUST00000020171:c.G56A:p.C19Y 10qA4 NA NA chr10 24315587 TCTxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353723 0.353947 0.999366 38 0 0 8.481416 0.235294 0.02 -0.166617 13 4 379 106 60 60 0 0 GG 5.113042 17 0 470 0 KEEP - Ctgf YES AID_2 chr10 24315725 24315725 C T exonic Ctgf nonsynonymous SNV NM_010217:c.C107T:p.A36V exonic Ctgf nonsynonymous SNV uc011xbr.1:c.C107T:p.A36V exonic ENSMUSG00000019997 nonsynonymous SNV ENSMUST00000020171:c.C107T:p.A36V 10qA4 NA NA chr10 24315725 CAGxCGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 41 0 0 8.565093 0.2 0.02 -0.184063 16 4 440 110 60 60 0 0 CC 5.111476 17 0 459 0 KEEP + Ctgf YES AID_2 chr10 24315802 24315802 C T exonic Ctgf stopgain SNV NM_010217:c.C184T:p.Q62X exonic Ctgf stopgain SNV uc011xbr.1:c.C184T:p.Q62X exonic ENSMUSG00000019997 stopgain SNV ENSMUST00000020171:c.C184T:p.Q62X 10qA4 NA NA chr10 24315802 AAGxAGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 86 4 0 16.527026 0.210526 0.02 -0.34201 30 8 881 212 60 60 0 1 CC 9.32483 31 0 874 0 KEEP + Ctgf YES AID_2 chr10 24315804 24315804 G A exonic Ctgf synonymous SNV NM_010217:c.G186A:p.Q62Q exonic Ctgf synonymous SNV uc011xbr.1:c.G186A:p.Q62Q exonic ENSMUSG00000019997 synonymous SNV ENSMUST00000020171:c.G186A:p.Q62Q 10qA4 NA NA chr10 24315804 GCAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 88 4 0 20.703683 0.25 0.02 -0.333269 27 9 799 252 60 60 0 1 GG 9.626267 32 0 912 0 KEEP + Ctgf YES AID_2 chr10 24315818 24315818 G A exonic Ctgf nonsynonymous SNV NM_010217:c.G200A:p.C67Y exonic Ctgf nonsynonymous SNV uc011xbr.1:c.G200A:p.C67Y exonic ENSMUSG00000019997 nonsynonymous SNV ENSMUST00000020171:c.G200A:p.C67Y 10qA4 NA NA chr10 24315818 TGTxTAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 98 4 0 21.332999 0.227273 0.02 -0.394604 34 10 984 268 60 60 0 0 GG 9.324312 31 0 871 0 KEEP + Ctgf YES AID_2 chr10 24315900 24315900 C T exonic Ctgf synonymous SNV NM_010217:c.C282T:p.C94C exonic Ctgf synonymous SNV uc011xbr.1:c.C282T:p.C94C exonic ENSMUSG00000019997 synonymous SNV ENSMUST00000020171:c.C282T:p.C94C 10qA4 NA NA chr10 24315900 GTGxACT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 80 0 0 9.169702 0.131579 0.02 -0.350362 33 5 945 132 60 60 0 0 CC 8.708124 29 0 806 0 KEEP + Ctgf YES AID_2 chr10 24316149 24316149 G A intronic Ctgf NA NA intronic Ctgf NA NA ncRNA_intronic ENSMUSG00000087400 NA NA 10qA4 NA NA chr10 24316149 CCCxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 510 0 0 72.158452 0.165899 0.02 4.337159 181 36 5384 973 70 60 0 0 GG 53.846352 179 0 5094 0 KEEP + Ctgf YES AID_2 chr10 24316424 24316424 G A intronic Ctgf NA NA intronic Ctgf NA NA ncRNA_intronic ENSMUSG00000087400 NA NA 10qA4 NA NA chr10 24316424 AAAxTTA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 133 0 0 30.67325 0.2 0.02 1.081347 56 14 1610 392 60 60 0 0 GG 15.03883 50 0 1395 0 KEEP + Ctgf YES AID_2 chr10 40985297 40985297 A C intronic Fig4 NA NA intronic Fig4 NA NA intronic ENSMUSG00000038417 NA NA 10qB1 NA NA chr10 40985297 TTAxGAA A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 140 0 0 7.707023 0.092308 0.02 0.531545 59 6 1710 135 60 60 0 0 AA 15.340985 51 0 1434 0 KEEP - Fig4 NO AID_2 chr10 52248684 52248684 G T intergenic "Nus1(dist=88686),Zfa-ps(dist=13442)" NA NA intergenic "Nus1(dist=88686),Zfa(dist=13440)" NA NA exonic ENSMUSG00000092112 nonsynonymous SNV ENSMUST00000172340:c.G359T:p.G120V 10qB3 "Score=0.977099;Name=No.11350,chr8:56203814" NA chr10 52248684 ATGxGAG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 196 6 75 12.354989 0.146341 0.02 -0.359543 35 6 1012 169 57 43 0 0 GG 27.637863 92 0 2541 0 KEEP NA Nus1 NO AID_2 chr10 52248685 52248685 G T intergenic "Nus1(dist=88687),Zfa-ps(dist=13441)" NA NA intergenic "Nus1(dist=88687),Zfa(dist=13439)" NA NA exonic ENSMUSG00000092112 synonymous SNV ENSMUST00000172340:c.G360T:p.G120G 10qB3 "Score=0.977099;Name=No.11350,chr8:56203814" NA chr10 52248685 TGGxAGA G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 197 7 77 11.925689 0.15 0.02 -0.350724 34 6 983 164 57 43 0 0 GG 28.26171 94 0 2628 0 KEEP NA Nus1 NO AID_2 chr10 57695036 57695036 C A exonic Dux nonsynonymous SNV NM_001081954:c.G388T:p.A130S exonic Dux nonsynonymous SNV uc007fcv.2:c.G388T:p.A130S upstream ENSMUSG00000075046 NA NA 10qB4 "Score=0.969256;Name=No.5883,chr10:57683794" NA chr10 57695036 AGGxTTG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 646 9 244 9.452041 0.039106 0.02 2.922416 172 7 5012 189 36 22 0 0 CC 79.361163 264 0 7435 0 KEEP - Dux NO AID_2 chr10 59413304 59413304 G A exonic Ddit4 synonymous SNV NM_029083:c.C670T:p.L224L exonic Ddit4 synonymous SNV uc007fee.1:c.C670T:p.L224L exonic ENSMUSG00000020108 synonymous SNV ENSMUST00000020308:c.C670T:p.L224L 10qB4 NA NA chr10 59413304 GCAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 97 0 0 30.757432 0.302326 0.02 -0.37709 30 13 888 360 60 60 0 0 GG 11.129882 37 0 1047 0 KEEP - Ddit4 YES AID_2 chr10 74608221 74608221 G C intronic Bcr NA NA intronic Bcr NA NA intronic ENSMUSG00000009681 NA NA 10qC1 NA NA chr10 74608221 CTGxTGG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 107 0 0 20.402224 0.157895 0.02 1.375709 48 9 1349 269 60 60 0 0 GG 11.727058 39 0 1042 0 KEEP + Bcr NO AID_2 chr10 79616716 79616716 G A exonic Midn synonymous SNV NM_021565:c.G672A:p.R224R exonic Midn synonymous SNV uc007gcb.1:c.G543A:p.R181R exonic ENSMUSG00000035621 synonymous SNV ENSMUST00000146516:c.G222A:p.R74R 10qC1 NA NA chr10 79616716 CCGxGGA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 236 0 0 8.595803 0.051095 0.02 2.183062 130 7 3715 168 60 60 0 0 GG 27.592184 92 0 2487 0 KEEP + Midn YES AID_2 chr10 79616717 79616717 G T exonic Midn stopgain SNV NM_021565:c.G673T:p.G225X exonic Midn stopgain SNV uc007gcb.1:c.G544T:p.G182X exonic ENSMUSG00000035621 stopgain SNV ENSMUST00000146516:c.G223T:p.G75X 10qC1 NA NA chr10 79616717 CGGxGAG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 243 0 0 8.334022 0.05036 0.02 1.772462 132 7 3793 169 60 60 0 0 GG 27.896497 93 0 2537 0 KEEP + Midn NO AID_2 chr10 79617107 79617107 G A exonic Midn nonsynonymous SNV NM_021565:c.G866A:p.S289N exonic Midn nonsynonymous SNV uc007gcb.1:c.G737A:p.S246N exonic ENSMUSG00000035621 nonsynonymous SNV ENSMUST00000146516:c.G416A:p.S139N 10qC1 NA NA chr10 79617107 GCAxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959858 0.959859 0.999999 108 2 0 9.082651 0.102041 0.02 -0.437552 44 5 1252 137 60 60 0 0 GG 10.828539 36 0 1007 0 KEEP + Midn YES AID_2 chr10 79849514 79849514 G A exonic Mex3d synonymous SNV NM_198615:c.C652T:p.L218L exonic Mex3d synonymous SNV uc007gcz.1:c.C652T:p.L218L exonic ENSMUSG00000048696 synonymous SNV ENSMUST00000062946:c.C652T:p.L218L 10qC1 NA NA chr10 79849514 CCAxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 152 0 0 9.958317 0.073171 0.02 0.878444 76 6 2164 164 60 60 0 0 GG 14.436494 48 0 1319 0 KEEP - Mex3d YES AID_2 chr10 93499050 93499050 C T exonic Fgd6 nonsynonymous SNV NM_053072:c.C11T:p.A4V exonic Fgd6 nonsynonymous SNV uc011xlz.1:c.C11T:p.A4V exonic ENSMUSG00000020021 nonsynonymous SNV ENSMUST00000020208:c.C11T:p.A4V 10qC2 NA NA chr10 93499050 CTGxCGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999998 87 0 0 11.331495 0.15 0.02 -0.368254 34 6 974 158 60 60 0 0 CC 9.923366 33 0 908 0 KEEP + Fgd6 YES AID_2 chr10 98726316 98726316 C G UTR5 Dusp6 NA NA UTR5 Dusp6 NA NA UTR5 ENSMUSG00000019960 NA NA 10qD1 NA NA chr10 98726316 CAGxTCG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 281 4 0 61.061881 0.206349 0.02 2.473685 100 26 2880 765 60 60 0 0 CC 33.068252 110 0 3019 0 KEEP + Dusp6 NO AID_2 chr10 98726454 98726454 G A exonic Dusp6 synonymous SNV NM_026268:c.G129A:p.E43E exonic Dusp6 synonymous SNV uc007gxk.2:c.G129A:p.E43E exonic ENSMUSG00000019960 synonymous SNV ENSMUST00000020118:c.G129A:p.E43E 10qD1 NA NA chr10 98726454 GGAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 570 7 0 16.326957 0.045082 0.02 4.632422 233 11 6749 305 60 60 0 0 GG 64.666299 215 0 5987 0 KEEP + Dusp6 YES AID_2 chr10 98726457 98726457 G A exonic Dusp6 synonymous SNV NM_026268:c.G132A:p.L44L exonic Dusp6 synonymous SNV uc007gxk.2:c.G132A:p.L44L exonic ENSMUSG00000019960 synonymous SNV ENSMUST00000020118:c.G132A:p.L44L 10qD1 NA NA chr10 98726457 GCTxTAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 567 7 0 243.183106 0.411523 0.02 4.24127 143 100 4139 2670 60 60 0 0 GG 63.132849 210 0 5771 0 KEEP + Dusp6 YES AID_2 chr10 98727472 98727472 G A exonic Dusp6 nonsynonymous SNV NM_026268:c.G695A:p.G232D exonic Dusp6 nonsynonymous SNV uc007gxk.2:c.G695A:p.G232D exonic ENSMUSG00000019960 nonsynonymous SNV ENSMUST00000020118:c.G695A:p.G232D 10qD1 NA NA chr10 98727472 TTGxCAT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 277 0 0 8.795042 0.045455 0.02 2.127463 126 6 3633 165 60 60 0 0 GG 25.849381 96 1 2632 28 KEEP + Dusp6 YES AID_2 chr11 100831499 100831499 C T exonic Ptrf synonymous SNV NM_008986:c.G282A:p.E94E exonic Ptrf synonymous SNV uc007lmr.1:c.G282A:p.E94E exonic ENSMUSG00000004044 synonymous SNV ENSMUST00000060792:c.G282A:p.E94E 11qD NA NA chr11 100831499 CAGxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 217 0 0 58.275154 0.320513 0.02 1.100913 53 25 1518 676 60 60 0 0 CC 32.781964 109 0 3009 0 KEEP - Ptrf YES AID_2 chr11 102054462 102054462 G T exonic G6pc3 nonsynonymous SNV NM_175935:c.G599T:p.G200V exonic G6pc3 nonsynonymous SNV uc007lqt.1:c.G599T:p.G200V exonic ENSMUSG00000034793 nonsynonymous SNV ENSMUST00000078975:c.G599T:p.G200V 11qD NA NA chr11 102054462 ATGxGTT G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 67 2 0 10.857283 0.217391 0.02 -0.20171 18 5 528 137 60 60 0 0 GG 9.625952 32 0 904 0 KEEP + G6pc3 NO AID_2 chr11 102467048 102467048 C A exonic Fzd2 nonsynonymous SNV NM_020510:c.C1003A:p.L335I exonic Fzd2 nonsynonymous SNV uc011yft.1:c.C1003A:p.L335I exonic ENSMUSG00000050288 nonsynonymous SNV ENSMUST00000057893:c.C1003A:p.L335I 11qE1 NA NA chr11 102467048 ATAxTCT C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 112 0 0 28.971036 0.307692 0.02 -0.342026 27 12 787 337 60 60 1 0 CC 18.047579 60 0 1678 0 KEEP + Fzd2 NO AID_2 chr11 102467050 102467050 C T exonic Fzd2 synonymous SNV NM_020510:c.C1005T:p.L335L exonic Fzd2 synonymous SNV uc011yft.1:c.C1005T:p.L335L exonic ENSMUSG00000050288 synonymous SNV ENSMUST00000057893:c.C1005T:p.L335L 11qE1 NA NA chr11 102467050 ACTxTTC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 114 0 0 32.179924 0.317073 0.02 -0.359586 28 13 832 371 60 60 1 0 CC 18.04993 60 0 1723 0 KEEP + Fzd2 YES AID_2 chr11 102770319 102770319 C T exonic Kif18b synonymous SNV NM_197959:c.G1617A:p.E539E exonic Kif18b synonymous SNV uc007lsy.2:c.G1617A:p.E539E exonic ENSMUSG00000051378 synonymous SNV ENSMUST00000021311:c.G1617A:p.E539E 11qE1 NA NA chr11 102770319 AAAxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.99986 50 0 0 14.868711 0.352941 0.02 -0.14909 11 6 323 168 60 60 0 0 CC 5.715153 19 0 534 0 KEEP - Kif18b YES AID_2 chr11 103595213 103595213 A G intronic Wnt9b NA NA intronic Wnt9b NA NA intronic ENSMUSG00000018486 NA NA 11qE1 NA NA chr11 103595213 GGAxGAT A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.321674 0.322807 0.99649 39 0 0 14.986602 0.333333 0.02 -0.157864 12 6 354 171 60 60 0 0 AA 4.512027 15 0 421 0 KEEP - Wnt9b NO AID_2 chr11 116719816 116719816 G A exonic Mfsd11 nonsynonymous SNV NM_178620:c.G181A:p.A61T exonic Mfsd11 nonsynonymous SNV uc007mmp.1:c.G181A:p.A61T exonic ENSMUSG00000020818 nonsynonymous SNV ENSMUST00000151185:c.G29A:p.C10Y 11qE2 NA NA chr11 116719816 TCTxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 208 0 0 9.992098 0.071429 0.02 0.860647 78 6 2298 165 60 60 0 0 GG 26.425628 88 0 2478 0 KEEP + Mfsd11 YES AID_2 chr11 118216226 118216226 G A intronic Timp2 NA NA intronic Timp2 NA NA intronic ENSMUSG00000017466 NA NA 11qE2 NA NA chr11 118216226 CCGxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 57 2 0 9.181238 0.235294 0.02 -0.149095 13 4 383 113 60 60 0 0 GG 7.820817 26 0 729 0 KEEP - Timp2 YES AID_2 chr11 120207943 120207943 C G intronic Actg1 NA NA intronic Actg1 NA NA intronic ENSMUSG00000062825 NA NA 11qE2 "Score=0.994048;Name=No.15302,chr4:103235990" NA chr11 120207943 TAGxCAC C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229148 0.229173 0.999892 43 0 0 12.739136 0.333333 0.02 -0.13155 10 5 288 145 60 60 0 0 CC 6.896971 23 0 610 0 KEEP - Actg1 NO AID_2 chr11 120208945 120208945 C T intronic Actg1 NA NA intronic Actg1 NA NA intronic ENSMUSG00000062825 NA NA 11qE2 "Score=0.994048;Name=No.15302,chr4:103235990" NA chr11 120208945 AAGxATA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 235 2 0 16.386651 0.109756 0.02 0.869417 73 9 2160 244 60 60 0 0 CC 31.560988 105 0 2925 0 KEEP - Actg1 YES AID_2 chr11 29593805 29593805 G A UTR5 Rtn4 NA NA UTR5 Rtn4 NA NA UTR5 ENSMUSG00000020458 NA NA 11qA3.3 NA NA chr11 29593805 GGTxATG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 122 2 0 31.148314 0.285714 0.02 -0.438349 35 14 1005 372 60 60 0 0 GG 13.472298 45 0 1240 0 KEEP + Rtn4 YES AID_2 chr11 33047248 33047248 G A exonic Fgf18 nonsynonymous SNV NM_008005:c.C26T:p.T9I exonic Fgf18 nonsynonymous SNV uc007ikc.1:c.C26T:p.T9I exonic ENSMUSG00000057967 nonsynonymous SNV ENSMUST00000020507:c.C26T:p.T9I 11qA4 NA NA chr11 33047248 CAAxTGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120431 0.120436 0.999957 48 0 0 6.532242 0.272727 0.02 -0.096448 8 3 229 79 60 60 0 0 GG 7.801632 26 0 689 0 KEEP - Fgf18 YES AID_2 chr11 3851921 3851921 A C intergenic "Tcn2(dist=19840),Pes1(dist=12057)" NA NA intergenic "Tcn2(dist=19840),Pes1(dist=12057)" NA NA ncRNA_exonic ENSMUSG00000082816 NA NA 11qA1 "Score=0.967611;Name=No.16048,chr8:95239653" NA chr11 3851921 GGAxGCT A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 680 3 0 19.463181 0.057143 0.02 4.241299 231 14 6633 360 60 60 0 0 AA 96.231207 320 0 8895 0 KEEP NA Tcn2 NO AID_2 chr11 45805666 45805666 G C intronic Sox30 NA NA intronic Sox30 NA NA intronic ENSMUSG00000040489 NA NA 11qB1.1 NA NA chr11 45805666 CTGxGGG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 88 0 0 17.930358 0.257143 0.02 -0.324382 26 9 749 223 60 60 0 0 GG 13.533439 45 0 1241 0 KEEP + Sox30 NO AID_2 chr11 45869651 45869651 G A exonic Adam19 synonymous SNV NM_009616:c.G36A:p.L12L exonic Adam19 synonymous SNV uc007iny.1:c.G36A:p.L12L exonic ENSMUSG00000011256 synonymous SNV ENSMUST00000011400:c.G36A:p.L12L 11qB1.1 NA NA chr11 45869651 CTTxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 164 4 0 38.88414 0.34 0.02 -0.438393 33 17 980 447 60 60 0 0 GG 23.721116 79 0 2162 0 KEEP + Adam19 YES AID_2 chr11 48973539 48973539 C T exonic Olfr1394 nonsynonymous SNV NM_146276:c.C22T:p.H8Y exonic Olfr1394 nonsynonymous SNV uc007ipt.1:c.C22T:p.H8Y exonic ENSMUSG00000048378 nonsynonymous SNV ENSMUST00000052668:c.C22T:p.H8Y 11qB1.2 NA NA chr11 48973539 AATxATT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 182 0 0 49.154603 0.333333 0.02 1.169004 40 20 1204 562 60 60 0 0 CC 25.568512 85 0 2431 0 KEEP + Olfr1394 YES AID_2 chr11 54215432 54215432 A C intronic 4930404A10Rik NA NA intronic 4930404A10Rik NA NA ncRNA_exonic ENSMUSG00000078151 NA NA 11qB1.3 "Score=0.997625;Name=No.14664,chr2:163231563" NA chr11 54215432 CTAxGAA A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 315 0 140 25.481405 0.206349 0.02 1.044904 50 13 1448 332 46 46 0 0 AA 50.833748 169 0 4727 0 KEEP + 4930404A10Rik NO AID_2 chr11 58768585 58768585 C T exonic Hist3h2a synonymous SNV NM_178218:c.C346T:p.L116L exonic Hist3h2a synonymous SNV uc007jct.1:c.C346T:p.L116L exonic ENSMUSG00000078851 synonymous SNV ENSMUST00000108817:c.C346T:p.L116L 11qB1.3 NA NA chr11 58768585 GTGxTAC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 161 2 0 51.264499 0.308824 0.02 1.098864 47 21 1376 595 60 60 0 0 CC 19.242607 64 0 1755 0 KEEP + Hist3h2a YES AID_2 chr11 58891988 58891988 A C intronic Obscn NA NA intronic Obscn NA NA intronic ENSMUSG00000061462 NA NA 11qB1.3 NA NA chr11 58891988 GGAxGCT A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 78 0 0 15.807633 0.32 0.02 -0.219153 17 8 485 188 60 60 0 0 AA 12.633 42 0 1175 0 KEEP - Obscn NO AID_2 chr11 60310455 60310455 A C exonic Myo15 nonsynonymous SNV NM_182698:c.A2252C:p.K751T exonic Myo15 nonsynonymous SNV uc007jga.1:c.A2246C:p.K749T exonic ENSMUSG00000042678 nonsynonymous SNV ENSMUST00000081823:c.A2252C:p.K751T 11qB2 NA NA chr11 60310455 TGAxGTT A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 141 0 0 31.693258 0.325581 0.02 -0.377049 29 14 838 368 60 60 0 0 AA 19.850723 66 0 1825 0 KEEP + Myo15 NO AID_2 chr11 6216793 6216793 T G exonic Ogdh nonsynonymous SNV NM_001252283:c.T440G:p.L147R exonic Ogdh nonsynonymous SNV uc007hyh.1:c.T440G:p.L147R exonic ENSMUSG00000020456 nonsynonymous SNV ENSMUST00000079291:c.T115G:p.L39V 11qA1 NA NA chr11 6216793 AACxTGA T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 162 2 0 53.707897 0.370968 0.02 1.249902 39 23 1130 605 60 60 0 0 TT 20.152602 67 0 1868 0 KEEP + Ogdh NO AID_2 chr11 68873868 68873868 G C exonic 2310047M10Rik nonsynonymous SNV NM_028005:c.G569C:p.G190A exonic 2310047M10Rik nonsynonymous SNV uc007jpb.1:c.G569C:p.G190A exonic ENSMUSG00000045176 nonsynonymous SNV ENSMUST00000051888:c.G569C:p.G190A 11qB3 NA NA chr11 68873868 GTGxCGA G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353179 0.353947 0.997832 41 0 0 22.000429 0.421053 0.02 -0.16663 11 8 313 238 60 60 0 0 GG 4.812208 16 0 438 0 KEEP + 2310047M10Rik NO AID_2 chr11 69693590 69693590 C T exonic Kctd11 synonymous SNV NM_153143:c.G123A:p.R41R exonic Kctd11 synonymous SNV uc007jsd.2:c.G123A:p.R41R exonic ENSMUSG00000046731 synonymous SNV ENSMUST00000050555:c.G123A:p.R41R 11qB3 NA NA chr11 69693590 TAGxCGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 53 1 0 23.044688 0.434783 0.02 -0.200336 13 10 376 252 60 60 0 0 CC 6.897548 23 0 614 0 KEEP - Kctd11 YES AID_2 chr11 70208599 70208599 A G exonic Pelp1 synonymous SNV NM_029231:c.T1944C:p.T648T exonic Pelp1 synonymous SNV uc007jup.2:c.T1944C:p.T648T exonic ENSMUSG00000018921 synonymous SNV ENSMUST00000019065:c.T1944C:p.T648T 11qB3 NA NA chr11 70208599 AGGxGTG A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58286 0.58293 0.999879 54 0 0 19.048403 0.307692 0.02 -0.227957 18 8 498 222 60 60 0 0 AA 6.611611 22 0 598 0 KEEP - Pelp1 NO AID_2 chr11 70466339 70466339 C T exonic Pfn1 nonsynonymous SNV NM_011072:c.G275A:p.S92N exonic Pfn1 nonsynonymous SNV uc007jvv.2:c.G275A:p.S92N exonic ENSMUSG00000018293 nonsynonymous SNV ENSMUST00000018437:c.G275A:p.S92N 11qB3 NA NA chr11 70466339 GTGxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 204 2 0 32.966521 0.214286 0.02 1.081331 55 15 1615 416 60 60 0 0 CC 28.872026 96 0 2671 0 KEEP - Pfn1 YES AID_2 chr11 70467858 70467858 C T exonic Pfn1 nonsynonymous SNV NM_011072:c.G125A:p.S42N exonic Pfn1 nonsynonymous SNV uc007jvv.2:c.G125A:p.S42N exonic ENSMUSG00000018293 nonsynonymous SNV ENSMUST00000018437:c.G125A:p.S42N 11qB3 NA NA chr11 70467858 ATGxTAA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 80 0 0 21.370419 0.321429 0.02 -0.244991 19 9 526 247 60 60 0 0 CC 14.123932 47 0 1274 0 KEEP - Pfn1 YES AID_2 chr11 74979005 74979005 C T exonic Hic1 synonymous SNV NM_001098203:c.G2079A:p.P693P exonic Hic1 synonymous SNV uc007kdc.1:c.G2079A:p.P693P exonic ENSMUSG00000043099 synonymous SNV ENSMUST00000055619:c.G2559A:p.P853P 11qB5 NA NA chr11 74979005 CAGxGGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 289 1 0 10.757223 0.07 0.02 2.213269 93 7 2525 184 60 60 0 0 CC 40.827569 136 0 3405 0 KEEP - Hic1 YES AID_2 chr11 74979891 74979891 C T exonic Hic1 nonsynonymous SNV NM_001098203:c.G1193A:p.S398N exonic Hic1 nonsynonymous SNV uc007kdc.1:c.G1193A:p.S398N exonic ENSMUSG00000043099 nonsynonymous SNV ENSMUST00000055619:c.G1673A:p.S558N 11qB5 NA NA chr11 74979891 CTGxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 123 0 0 9.21762 0.090909 0.02 1.212853 50 5 1481 141 60 60 0 0 CC 15.041024 50 0 1426 0 KEEP - Hic1 YES AID_2 chr11 78039701 78039701 C G exonic Supt6 nonsynonymous SNV NM_009297:c.G1708C:p.A570P exonic Supt6h nonsynonymous SNV uc007kip.2:c.G1708C:p.A570P exonic ENSMUSG00000002052 nonsynonymous SNV ENSMUST00000002121:c.G1708C:p.A570P 11qB5 NA NA chr11 78039701 TGGxCAG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 90 0 0 22.062103 0.264706 0.02 -0.29817 25 9 717 263 60 60 0 0 CC 12.019114 40 0 1094 0 KEEP - Supt6 NO AID_2 chr11 86398809 86398809 C T UTR3 Vmp1 NA NA UTR3 Tmem49 NA NA UTR3 ENSMUSG00000018171 NA NA 11qC "Score=0.912605;Name=No.15454,chr5:30157519" NA chr11 86398809 CTGxTTA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 75 0 0 13.606652 0.285714 0.02 -0.184158 15 6 436 162 60 60 0 0 CC 13.532549 45 0 1241 0 KEEP - Vmp1 YES AID_2 chr11 86398869 86398869 C A exonic Vmp1 nonsynonymous SNV NM_029478:c.G1162T:p.A388S exonic Tmem49 nonsynonymous SNV uc007ksv.1:c.G1162T:p.A388S exonic ENSMUSG00000018171 nonsynonymous SNV ENSMUST00000018315:c.G1162T:p.A388S 11qC "Score=0.912605;Name=No.15454,chr5:30157519" NA chr11 86398869 GTGxCAT C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 105 0 0 17.392638 0.242424 0.02 -0.297379 25 8 707 215 60 60 0 0 CC 15.939549 53 0 1457 0 KEEP - Vmp1 NO AID_2 chr11 86398915 86398915 C T exonic Vmp1 synonymous SNV NM_029478:c.G1116A:p.V372V exonic Tmem49 synonymous SNV uc007ksv.1:c.G1116A:p.V372V exonic ENSMUSG00000018171 synonymous SNV ENSMUST00000018315:c.G1116A:p.V372V 11qC "Score=0.912605;Name=No.15454,chr5:30157519" NA chr11 86398915 AACxACC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 135 0 0 30.492637 0.265306 0.02 -0.438507 36 13 1059 366 60 60 0 0 CC 18.337813 61 0 1722 0 KEEP - Vmp1 YES AID_2 chr11 86398921 86398921 C T exonic Vmp1 synonymous SNV NM_029478:c.G1110A:p.K370K exonic Tmem49 synonymous SNV uc007ksv.1:c.G1110A:p.K370K exonic ENSMUSG00000018171 synonymous SNV ENSMUST00000018315:c.G1110A:p.K370K 11qC "Score=0.912605;Name=No.15454,chr5:30157519" NA chr11 86398921 CAGxTTC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 129 0 0 36.248897 0.306122 0.02 -0.438507 34 15 1001 422 60 60 0 0 CC 17.129687 57 0 1594 0 KEEP - Vmp1 YES AID_2 chr11 86398930 86398930 C T exonic Vmp1 nonsynonymous SNV NM_029478:c.G1101A:p.M367I exonic Tmem49 nonsynonymous SNV uc007ksv.1:c.G1101A:p.M367I exonic ENSMUSG00000018171 nonsynonymous SNV ENSMUST00000018315:c.G1101A:p.M367I 11qC "Score=0.912605;Name=No.15454,chr5:30157519" NA chr11 86398930 AAAxATC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 131 0 0 55.549899 0.44898 0.02 -0.438472 27 22 796 597 60 60 0 0 CC 17.747616 59 0 1667 0 KEEP - Vmp1 YES AID_2 chr11 86400002 86400002 G A exonic Vmp1 nonsynonymous SNV NM_029478:c.C1073T:p.P358L exonic Tmem49 nonsynonymous SNV uc007ksv.1:c.C1073T:p.P358L exonic ENSMUSG00000018171 nonsynonymous SNV ENSMUST00000018315:c.C1073T:p.P358L 11qC NA NA chr11 86400002 TGCxGTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 86 0 0 30.132082 0.478261 0.02 -0.236791 12 11 349 318 60 60 0 0 GG 12.610998 42 0 1150 0 KEEP - Vmp1 YES AID_2 chr11 86400052 86400052 G A exonic Vmp1 synonymous SNV NM_029478:c.C1023T:p.Y341Y exonic Tmem49 synonymous SNV uc007ksv.1:c.C1023T:p.Y341Y exonic ENSMUSG00000018171 synonymous SNV ENSMUST00000018315:c.C1023T:p.Y341Y 11qC NA NA chr11 86400052 CAGxTAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 93 0 0 11.15361 0.208333 0.02 -0.236779 19 5 544 141 60 60 0 0 GG 14.433546 48 0 1302 0 KEEP - Vmp1 YES AID_2 chr11 86400098 86400098 G A exonic Vmp1 nonsynonymous SNV NM_029478:c.C977T:p.A326V exonic Tmem49 nonsynonymous SNV uc007ksv.1:c.C977T:p.A326V exonic ENSMUSG00000018171 nonsynonymous SNV ENSMUST00000018315:c.C977T:p.A326V 11qC NA NA chr11 86400098 ACAxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 59 0 0 6.573325 0.214286 0.02 -0.130995 11 3 319 83 60 60 0 0 GG 10.525947 35 0 958 0 KEEP - Vmp1 YES AID_2 chr11 86570796 86570796 C T UTR5 Cltc NA NA UTR5 Cltc NA NA UTR5 ENSMUSG00000047126 NA NA 11qC NA NA chr11 86570796 GCGxTGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 144 3 0 27.693471 0.266667 0.02 -0.40341 33 12 970 333 60 60 0 0 CC 20.740258 69 0 1933 0 KEEP - Cltc YES AID_2 chr11 88936338 88936338 C G exonic Gm525 nonsynonymous SNV NM_001033266:c.C91G:p.Q31E exonic Gm525 nonsynonymous SNV uc007kwg.1:c.C91G:p.Q31E exonic ENSMUSG00000072553 nonsynonymous SNV ENSMUST00000127186:c.C16G:p.Q6E 11qC NA NA chr11 88936338 AAAxAGC C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 193 2 0 54.350579 0.3 0.02 1.278276 49 21 1440 629 60 60 0 0 CC 24.062993 80 0 2236 0 KEEP + Gm525 NO AID_2 chr11 96132960 96132960 C T exonic Hoxb9 synonymous SNV NM_008270:c.C105T:p.N35N exonic Hoxb9 synonymous SNV uc007lbn.1:c.C105T:p.N35N exonic ENSMUSG00000020875 synonymous SNV ENSMUST00000000010:c.C105T:p.N35N 11qD NA NA chr11 96132960 GAAxCCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582905 0.58293 0.999957 70 0 0 22.010253 0.346154 0.02 -0.227996 17 9 485 250 60 60 0 0 CC 7.815515 26 0 700 0 KEEP + Hoxb9 YES AID_2 chr11 96145532 96145532 G A exonic Hoxb8 synonymous SNV NM_010461:c.G480A:p.E160E exonic Hoxb8 synonymous SNV uc007lbp.1:c.G477A:p.E159E exonic ENSMUSG00000056648 synonymous SNV ENSMUST00000052650:c.G480A:p.E160E 11qD NA NA chr11 96145532 GGAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 96 2 0 18.126289 0.210526 0.02 -0.333261 30 8 877 228 60 60 0 0 GG 12.019096 40 0 1099 0 KEEP + Hoxb8 YES AID_2 chr11 96145725 96145725 C T exonic Hoxb8 synonymous SNV NM_010461:c.C673T:p.L225L exonic Hoxb8 synonymous SNV uc007lbp.1:c.C670T:p.L224L exonic ENSMUSG00000056648 synonymous SNV ENSMUST00000052650:c.C673T:p.L225L 11qD NA NA chr11 96145725 AAGxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 97 0 0 41.039871 0.4 0.02 -0.350802 24 16 707 451 60 60 0 0 CC 10.528362 35 0 991 0 KEEP + Hoxb8 YES AID_2 chr11 96214678 96214678 G C exonic Hoxb2 nonsynonymous SNV NM_134032:c.G800C:p.S267T exonic Hoxb2 nonsynonymous SNV uc007lby.1:c.G800C:p.S267T exonic ENSMUSG00000075588 nonsynonymous SNV ENSMUST00000100523:c.G800C:p.S267T 11qD NA NA chr11 96214678 AGAxTGT G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 85 2 0 26.904375 0.34375 0.02 -0.280641 21 11 622 306 60 60 0 0 GG 14.431111 48 0 1320 0 KEEP + Hoxb2 NO AID_2 chr11 99442196 99442196 G A exonic Krtap1-5 synonymous SNV NM_027157:c.C84T:p.S28S exonic Krtap1-5 synonymous SNV uc007ljc.2:c.C84T:p.S28S exonic ENSMUSG00000047253 synonymous SNV ENSMUST00000054532:c.C84T:p.S28S 11qD NA NA chr11 99442196 ACAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 77 0 0 10.469802 0.185185 0.02 -0.236784 22 5 638 137 60 60 0 0 GG 12.031363 40 0 1114 0 KEEP - Krtap1-5 YES AID_2 chr12 11338992 11338992 C T exonic Vsnl1 nonsynonymous SNV NM_012038:c.G193A:p.A65T exonic Vsnl1 nonsynonymous SNV uc011ykf.1:c.G193A:p.A65T exonic ENSMUSG00000054459 nonsynonymous SNV ENSMUST00000072299:c.G193A:p.A65T 12qA1.1 NA NA chr12 11338992 GCGxGAA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 141 0 0 31.498422 0.291667 0.02 -0.42073 34 14 897 374 60 60 0 0 CC 20.387532 68 0 1681 0 KEEP - Vsnl1 YES AID_2 chr12 114526071 114526071 G A intergenic "Tmem121(dist=98338),Adam6b(dist=201705)" NA NA exonic "Igh,Ighg" nonsynonymous SNV uc007pgl.1:c.C214T:p.P72S exonic ENSMUSG00000076612 nonsynonymous SNV ENSMUST00000103416:c.C646T:p.P216S 12qF1 NA NA chr12 114526071 ATGxGAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 163 3 0 8.620552 0.066667 0.02 1.037567 70 5 2022 142 60 60 0 0 GG 16.527737 55 0 1519 0 KEEP - Tmem121 YES AID_2 chr12 31759744 31759744 C T exonic Fam110c nonsynonymous SNV NM_027828:c.C839T:p.A280V exonic Fam110c nonsynonymous SNV uc007nhb.1:c.C839T:p.A280V exonic ENSMUSG00000036136 nonsynonymous SNV ENSMUST00000041133:c.C839T:p.A280V 12qA2 NA NA chr12 31759744 CAGxCTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 121 0 0 30.625605 0.309524 0.02 -0.376678 29 13 829 357 60 60 0 0 CC 18.331014 61 0 1663 0 KEEP + Fam110c YES AID_2 chr12 31759960 31759960 G A exonic Fam110c nonsynonymous SNV NM_027828:c.G1055A:p.C352Y exonic Fam110c nonsynonymous SNV uc007nhb.1:c.G1055A:p.C352Y exonic ENSMUSG00000036136 nonsynonymous SNV ENSMUST00000041133:c.G1055A:p.C352Y 12qA2 NA NA chr12 31759960 ACTxTGT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 63 0 0 29.185106 0.413793 0.02 -0.254142 17 12 476 320 60 60 0 0 GG 8.421299 28 0 771 0 KEEP + Fam110c YES AID_2 chr12 31759962 31759962 G A exonic Fam110c nonsynonymous SNV NM_027828:c.G1057A:p.V353I exonic Fam110c nonsynonymous SNV uc007nhb.1:c.G1057A:p.V353I exonic ENSMUSG00000036136 nonsynonymous SNV ENSMUST00000041133:c.G1057A:p.V353I 12qA2 NA NA chr12 31759962 TGTxTTA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641339 0.641347 0.999988 60 0 0 29.517248 0.428571 0.02 -0.245526 16 12 459 321 60 60 0 0 GG 8.108581 27 0 727 0 KEEP + Fam110c YES AID_2 chr12 38132581 38132581 A T exonic Agmo synonymous SNV NM_178767:c.A1032T:p.A344A exonic Tmem195 synonymous SNV uc007nkh.1:c.A1032T:p.A344A exonic ENSMUSG00000050103 synonymous SNV ENSMUST00000049874:c.A1032T:p.A344A 12qA3 NA NA chr12 38132581 TGCxGTA A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490476 0.490544 0.99986 48 2 0 29.422661 0.5 0.02 -0.201703 11 11 318 308 60 60 0 0 AA 5.71518 19 0 532 0 KEEP + Agmo NO AID_2 chr12 50486161 50486161 G A exonic Foxg1 nonsynonymous SNV NM_001160112:c.G689A:p.C230Y exonic Foxg1 nonsynonymous SNV uc011ylr.1:c.G689A:p.C230Y exonic ENSMUSG00000020950 nonsynonymous SNV ENSMUST00000021333:c.G689A:p.C230Y 12qB3 NA NA chr12 50486161 AGTxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 192 0 0 128.635916 0.691176 0.02 1.081488 21 47 622 1245 60 60 0 0 GG 29.175515 97 0 2710 0 KEEP + Foxg1 YES AID_2 chr12 50486197 50486197 G A exonic Foxg1 nonsynonymous SNV NM_001160112:c.G725A:p.G242D exonic Foxg1 nonsynonymous SNV uc011ylr.1:c.G725A:p.G242D exonic ENSMUSG00000020950 nonsynonymous SNV ENSMUST00000021333:c.G725A:p.G242D 12qB3 NA NA chr12 50486197 CGGxCAA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 178 1 0 15.376405 0.129032 0.02 1.134511 54 8 1544 219 60 60 0 0 GG 26.145912 87 0 2379 0 KEEP + Foxg1 YES AID_2 chr12 50486216 50486216 G A exonic Foxg1 nonsynonymous SNV NM_001160112:c.G744A:p.M248I exonic Foxg1 nonsynonymous SNV uc007nmg.1:c.G3A:p.M1I exonic "ENSMUSG00000020950,ENSMUSG00000089922" nonsynonymous SNV ENSMUST00000110746:c.G3A:p.M1I 12qB3 NA NA chr12 50486216 GATxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 163 1 0 8.129439 0.090909 0.02 1.010269 50 5 1454 130 60 60 0 0 GG 24.272648 81 0 2203 0 KEEP + Foxg1 YES AID_2 chr12 56593496 56593496 C T exonic Nfkbia synonymous SNV NM_010907:c.G18A:p.G6G exonic Nfkbia synonymous SNV uc007nor.2:c.G18A:p.G6G exonic ENSMUSG00000021025 synonymous SNV ENSMUST00000021413:c.G18A:p.G6G 12qC1 NA NA chr12 56593496 GTGxCCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 164 0 0 54.183125 0.428571 0.02 -0.429699 28 21 811 587 60 60 0 0 CC 26.735236 89 0 2416 0 KEEP - Nfkbia YES AID_2 chr12 70473835 70473835 C T exonic Arf6 synonymous SNV NM_007481:c.C55T:p.L19L exonic Arf6 synonymous SNV uc007nsj.1:c.C55T:p.L19L exonic ENSMUSG00000044147 synonymous SNV ENSMUST00000050063:c.C55T:p.L19L 12qC2 NA NA chr12 70473835 ATGxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 256 0 0 22.500425 0.117647 0.02 2.495912 90 12 2642 328 60 60 0 0 CC 32.171915 107 0 2977 0 KEEP + Arf6 YES AID_2 chr12 81210958 81210958 G C exonic Zfp36l1 nonsynonymous SNV NM_007564:c.C635G:p.A212G exonic Zfp36l1 nonsynonymous SNV uc007oal.1:c.C635G:p.A212G exonic ENSMUSG00000021127 nonsynonymous SNV ENSMUST00000021552:c.C635G:p.A212G 12qC3 "Score=0.957762;Name=No.31973,chrX:35533837" NA chr12 81210958 GTGxCAG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 94 0 0 21.798978 0.272727 0.02 -0.297367 24 9 664 259 60 60 0 0 GG 15.847846 53 0 1348 0 KEEP - Zfp36l1 NO AID_2 chr12 81211203 81211203 C T exonic Zfp36l1 synonymous SNV NM_007564:c.G390A:p.K130K exonic Zfp36l1 synonymous SNV uc007oal.1:c.G390A:p.K130K exonic ENSMUSG00000021127 synonymous SNV ENSMUST00000021552:c.G390A:p.K130K 12qC3 "Score=0.957762;Name=No.31973,chrX:35533837" NA chr12 81211203 GTAxTTA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 251 0 0 7.280026 0.052083 0.02 0.746733 91 5 2619 134 60 60 0 0 CC 33.056216 110 0 3012 0 KEEP - Zfp36l1 YES AID_2 chr12 81213799 81213799 G A intronic Zfp36l1 NA NA intronic Zfp36l1 NA NA ncRNA_exonic ENSMUSG00000091645 NA NA 12qC3 NA NA chr12 81213799 CCTxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322793 0.322807 0.999957 57 0 0 26.696579 0.555556 0.02 -0.15785 8 10 238 273 60 60 0 0 GG 7.809884 26 0 736 0 KEEP - Zfp36l1 YES AID_2 chr12 81360982 81360982 G A exonic Actn1 stopgain SNV NM_134156:c.C97T:p.Q33X exonic Actn1 stopgain SNV uc007oap.2:c.C97T:p.Q33X exonic ENSMUSG00000015143 stopgain SNV ENSMUST00000021554:c.C97T:p.Q33X 12qC3 NA NA chr12 81360982 TCTxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.289823 0.292001 0.99254 34 2 0 26.965202 0.588235 0.02 -0.149065 7 10 202 272 60 60 0 0 GG 2.707559 9 0 260 0 KEEP - Actn1 YES AID_2 chr12 8505864 8505864 C A exonic Rhob nonsynonymous SNV NM_007483:c.G575T:p.C192F exonic Rhob nonsynonymous SNV uc007mzp.1:c.G575T:p.C192F exonic ENSMUSG00000054364 nonsynonymous SNV ENSMUST00000067384:c.G575T:p.C192F 12qA1.1 NA NA chr12 8505864 CAGxAGT C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 493 6 0 18.670772 0.060773 0.02 3.489704 170 11 4922 314 60 60 0 0 CC 65.837089 219 0 6020 0 KEEP - Rhob NO AID_2 chr12 8505962 8505962 G A exonic Rhob synonymous SNV NM_007483:c.C477T:p.C159C exonic Rhob synonymous SNV uc007mzp.1:c.C477T:p.C159C exonic ENSMUSG00000054364 synonymous SNV ENSMUST00000067384:c.C477T:p.C159C 12qA1.1 NA NA chr12 8505962 CGAxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 355 6 0 14.124135 0.064286 0.02 2.057425 131 9 3741 243 60 60 0 0 GG 49.004002 163 0 4467 0 KEEP - Rhob YES AID_2 chr12 8506002 8506002 G A exonic Rhob nonsynonymous SNV NM_007483:c.C437T:p.A146V exonic Rhob nonsynonymous SNV uc007mzp.1:c.C437T:p.A146V exonic ENSMUSG00000054364 nonsynonymous SNV ENSMUST00000067384:c.C437T:p.A146V 12qA1.1 NA NA chr12 8506002 ATGxCGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 251 0 0 38.816755 0.180952 0.02 2.469717 86 19 2457 513 60 60 0 0 GG 37.294122 124 0 3403 0 KEEP - Rhob YES AID_2 chr12 8506389 8506389 C T exonic Rhob nonsynonymous SNV NM_007483:c.G50A:p.G17D exonic Rhob nonsynonymous SNV uc007mzp.1:c.G50A:p.G17D exonic ENSMUSG00000054364 nonsynonymous SNV ENSMUST00000067384:c.G50A:p.G17D 12qA1.1 NA NA chr12 8506389 TTGxCGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 105 0 0 36.782902 0.394737 0.02 -0.333192 23 15 653 407 60 60 0 0 CC 16.22446 54 0 1462 0 KEEP - Rhob YES AID_2 chr12 88223152 88223152 C T exonic Irf2bpl nonsynonymous SNV NM_145836:c.G1696A:p.A566T exonic 6430527G18Rik nonsynonymous SNV uc007oia.2:c.G1696A:p.A566T exonic ENSMUSG00000034168 nonsynonymous SNV ENSMUST00000038422:c.G1696A:p.A566T 12qD2 "Score=0.953293;Name=No.13054,chr11:3528824" NA chr12 88223152 CCGxAAA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 40 0 0 8.08175 0.235294 0.02 -0.149052 13 4 388 102 60 60 0 0 CC 5.413931 18 0 503 0 KEEP - Irf2bpl YES AID_2 chr12 92772356 92772356 C T exonic Tshr synonymous SNV NM_011648:c.C720T:p.A240A exonic Tshr synonymous SNV uc007okq.2:c.C720T:p.A240A exonic ENSMUSG00000020963 synonymous SNV ENSMUST00000021346:c.C720T:p.A240A 12qD3 NA NA chr12 92772356 TGCxCTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 80 1 0 16.863364 0.269231 0.02 -0.228027 19 7 556 201 60 60 0 0 CC 12.633252 42 0 1175 0 KEEP + Tshr YES AID_2 chr13 108679578 108679578 C T intronic Zswim6 NA NA intronic Zswim6 NA NA intronic ENSMUSG00000032846 NA NA 13qD2.1 NA NA chr13 108679578 CAGxCCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 76 2 0 23.477004 0.344828 0.02 -0.253482 19 10 497 268 60 60 0 0 CC 9.592385 32 0 847 0 KEEP - Zswim6 YES AID_2 chr13 108679598 108679598 C A exonic Zswim6 synonymous SNV NM_145456:c.G645T:p.L215L exonic Zswim6 synonymous SNV uc007rup.2:c.G645T:p.L215L exonic ENSMUSG00000032846 synonymous SNV ENSMUST00000052377:c.G75T:p.L25L 13qD2.1 NA NA chr13 108679598 TTGxAGG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 77 2 0 25.005697 0.322581 0.02 -0.271872 21 10 612 287 60 60 0 0 CC 10.22569 34 0 943 0 KEEP - Zswim6 NO AID_2 chr13 108679627 108679627 G A exonic Zswim6 synonymous SNV NM_145456:c.C616T:p.L206L exonic Zswim6 synonymous SNV uc007rup.2:c.C616T:p.L206L exonic ENSMUSG00000032846 synonymous SNV ENSMUST00000052377:c.C46T:p.L16L 13qD2.1 NA NA chr13 108679627 CCAxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 78 2 0 29.329225 0.375 0.02 -0.280622 20 12 581 328 60 60 0 0 GG 10.199518 34 0 924 0 KEEP - Zswim6 YES AID_2 chr13 113836420 113836420 G C exonic Gpx8 nonsynonymous SNV NM_027127:c.C164G:p.A55G exonic Gpx8 nonsynonymous SNV uc007rxb.1:c.C164G:p.A55G exonic ENSMUSG00000021760 nonsynonymous SNV ENSMUST00000022282:c.C164G:p.A55G 13qD2.2 NA NA chr13 113836420 TTGxCAT G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 128 4 0 27.160881 0.261905 0.02 -0.377134 31 11 914 324 60 60 0 0 GG 17.441345 58 0 1585 0 KEEP - Gpx8 NO AID_2 chr13 115245916 115245916 C A exonic Fst nonsynonymous SNV NM_008046:c.G472T:p.V158L exonic Fst nonsynonymous SNV uc007rxn.1:c.G472T:p.V158L exonic ENSMUSG00000021765 nonsynonymous SNV ENSMUST00000022287:c.G472T:p.V158L 13qD2.2 NA NA chr13 115245916 GTAxTTC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 83 0 0 33.392468 0.393939 0.02 -0.289382 20 13 569 368 60 60 0 0 CC 11.128628 37 0 1025 0 KEEP - Fst NO AID_2 chr13 115248746 115248746 G A exonic Fst synonymous SNV NM_008046:c.C49T:p.L17L exonic Fst synonymous SNV uc007rxn.1:c.C49T:p.L17L exonic ENSMUSG00000021765 synonymous SNV ENSMUST00000022287:c.C49T:p.L17L 13qD2.2 NA NA chr13 115248746 GTAxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 34 0 0 8.823194 0.307692 0.02 -0.113993 9 4 261 104 60 60 0 0 GG 5.111482 17 0 463 0 KEEP - Fst YES AID_2 chr13 21809977 21809977 G A UTR3 Hist1h3h NA NA UTR3 Hist1h3h NA NA UTR3 ENSMUSG00000069312 NA NA 13qA3.1 NA NA chr13 21809977 AGAxCCA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 41 0 0 9.223597 0.307692 0.02 -0.113999 9 4 257 108 60 60 0 0 GG 6.917645 23 0 634 0 KEEP + Hist1h3h YES AID_2 chr13 21845494 21845494 C T exonic Hist1h2ak nonsynonymous SNV NM_178183:c.G203A:p.G68D exonic Hist1h2ak nonsynonymous SNV uc007prg.1:c.G203A:p.G68D exonic ENSMUSG00000063021 nonsynonymous SNV ENSMUST00000074752:c.G203A:p.G68D 13qA3.1 NA NA chr13 21845494 TTGxCCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 106 0 0 30.369065 0.375 0.02 -0.279252 20 12 549 338 60 60 0 0 CC 14.581714 49 0 1254 0 KEEP - Hist1h2ak YES AID_2 chr13 21872072 21872072 G A exonic Hist1h1b nonsynonymous SNV NM_020034:c.C352T:p.P118S exonic Hist1h1b nonsynonymous SNV uc007pri.1:c.C352T:p.P118S exonic ENSMUSG00000058773 nonsynonymous SNV ENSMUST00000080511:c.C352T:p.P118S 13qA3.1 NA NA chr13 21872072 TGGxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 107 2 0 30.066803 0.276596 0.02 -0.412169 34 13 980 359 60 60 0 0 GG 14.098577 47 0 1231 0 KEEP - Hist1h1b YES AID_2 chr13 21874819 21874819 G T UTR3 Hist1h3i NA NA UTR3 Hist1h3i NA NA UTR3 ENSMUSG00000075032 NA NA 13qA3.1 NA NA chr13 21874819 ACAxGTA G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 76 0 0 35.439481 0.518519 0.02 -0.236626 13 14 387 369 60 60 0 0 GG 11.131022 37 0 1067 0 KEEP - Hist1h3i NO AID_2 chr13 21874961 21874961 C T exonic Hist1h3i synonymous SNV NM_178207:c.G279A:p.L93L exonic Hist1h3i synonymous SNV uc007prj.1:c.G279A:p.L93L exonic ENSMUSG00000075032 synonymous SNV ENSMUST00000099704:c.G279A:p.L93L 13qA3.1 NA NA chr13 21874961 CTGxAGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 114 2 6 37.82359 0.347826 0.02 -0.412175 30 16 906 431 57 57 0 0 CC 13.534523 45 0 1258 0 KEEP - Hist1h3i YES AID_2 chr13 21875024 21875024 C A exonic Hist1h3i synonymous SNV NM_178207:c.G216T:p.V72V exonic Hist1h3i synonymous SNV uc007prj.1:c.G216T:p.V72V exonic ENSMUSG00000075032 synonymous SNV ENSMUST00000099704:c.G216T:p.V72V 13qA3.1 NA NA chr13 21875024 GCGxACC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423439 0.423478 0.999909 69 0 19 14.5569 0.3 0.02 -0.184173 14 6 417 170 57 54 0 0 CC 10.225011 34 0 948 0 KEEP - Hist1h3i NO AID_2 chr13 21875098 21875098 C A exonic Hist1h3i nonsynonymous SNV NM_178207:c.G142T:p.A48S exonic Hist1h3i nonsynonymous SNV uc007prj.1:c.G142T:p.A48S exonic ENSMUSG00000075032 nonsynonymous SNV ENSMUST00000099704:c.G142T:p.A48S 13qA3.1 NA NA chr13 21875098 GCGxCAC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.99986 93 1 38 16.815395 0.35 0.02 -0.184148 13 7 373 191 36 29 0 0 CC 11.367164 38 0 1025 0 KEEP - Hist1h3i NO AID_2 chr13 21904049 21904049 G T downstream "Hist1h4m,Hist1h4n" NA NA downstream Hist1h4n NA NA downstream ENSMUSG00000069306 NA NA 13qA3.1 "Score=0.992464;Name=No.32660,chr13:21923400" NA chr13 21904049 GCAxTAC G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 493 5 167 16.78553 0.109756 0.02 0.976067 73 9 2149 248 70 37 0 0 GG 67.973108 226 0 6270 0 KEEP NA Hist1h4m NO AID_2 chr13 22133010 22133010 C T exonic Hist1h4i synonymous SNV NM_175656:c.G183A:p.V61V exonic Hist1h4i synonymous SNV uc007psc.1:c.G183A:p.V61V exonic ENSMUSG00000060639 synonymous SNV ENSMUST00000102977:c.G183A:p.V61V 13qA3.1 NA NA chr13 22133010 GAAxACC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 241 3 64 36.632333 0.290909 0.02 1.106278 39 16 1111 434 52 36 0 0 CC 29.758304 99 0 2728 0 KEEP - Hist1h4i YES AID_2 chr13 23636904 23636904 C T UTR3 Hist1h3f NA NA UTR3 Hist1h3f NA NA UTR3 ENSMUSG00000059309 NA NA 13qA3.1 "Score=0.973684;Name=No.32697,chr13:23652443" NA chr13 23636904 GAGxACC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 116 1 27 16.145456 0.222222 0.02 -0.315194 28 8 779 206 60 60 0 0 CC 19.246726 64 0 1753 0 KEEP + Hist1h3f YES AID_2 chr13 23647312 23647312 G T exonic Hist1h1d nonsynonymous SNV NM_145713:c.G354T:p.K118N exonic Hist1h1d nonsynonymous SNV uc007pub.2:c.G354T:p.K118N exonic ENSMUSG00000052565 nonsynonymous SNV ENSMUST00000045301:c.G354T:p.K118N 13qA3.1 NA NA chr13 23647312 TAAxCCC G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119538 0.120436 0.99254 20 0 0 7.132475 0.272727 0.02 -0.09647 8 3 232 85 60 60 0 0 GG 2.706845 9 0 246 0 KEEP + Hist1h1d NO AID_2 chr13 23647328 23647328 G A exonic Hist1h1d nonsynonymous SNV NM_145713:c.G370A:p.A124T exonic Hist1h1d nonsynonymous SNV uc007pub.2:c.G370A:p.A124T exonic ENSMUSG00000052565 nonsynonymous SNV ENSMUST00000045301:c.G370A:p.A124T 13qA3.1 NA NA chr13 23647328 AAGxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119541 0.120436 0.99257 19 0 0 6.732406 0.272727 0.02 -0.096464 8 3 231 81 60 60 0 0 GG 2.405969 8 0 217 0 KEEP + Hist1h1d YES AID_2 chr13 23647535 23647535 G A exonic Hist1h1d nonsynonymous SNV NM_145713:c.G577A:p.A193T exonic Hist1h1d nonsynonymous SNV uc007pub.2:c.G577A:p.A193T exonic ENSMUSG00000052565 nonsynonymous SNV ENSMUST00000045301:c.G577A:p.A193T 13qA3.1 NA NA chr13 23647535 AAGxCCA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.259304 0.260965 0.993634 28 0 0 28.670739 0.625 0.02 -0.140322 6 10 179 285 60 60 0 0 GG 3.609758 12 0 340 0 KEEP + Hist1h1d YES AID_2 chr13 23653680 23653680 G T downstream Hist1h3e NA NA downstream Hist1h3e NA NA UTR3 ENSMUSG00000069273 NA NA 13qA3.1 "Score=0.973684;Name=No.32697,chr13:23636352" NA chr13 23653680 GGTxCTC G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 105 2 23 35.204074 0.464286 0.02 -0.245526 15 13 419 374 60 60 0 0 GG 18.030184 60 0 1637 0 KEEP NA Hist1h3e NO AID_2 chr13 23653974 23653974 G A exonic Hist1h3e synonymous SNV NM_178205:c.C261T:p.S87S exonic Hist1h3e synonymous SNV uc007puc.1:c.C261T:p.S87S exonic ENSMUSG00000069273 synonymous SNV ENSMUST00000105107:c.C261T:p.S87S 13qA3.1 "Score=0.973684;Name=No.32697,chr13:23636352" NA chr13 23653974 CGAxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 80 0 11 8.010056 0.173913 0.02 -0.208788 19 4 528 107 38 35 0 0 GG 14.720798 49 0 1324 0 KEEP - Hist1h3e YES AID_2 chr13 23663619 23663619 G A exonic Hist1h2bg synonymous SNV NM_178196:c.G318A:p.E106E exonic Hist1h2bg synonymous SNV uc007pue.2:c.G318A:p.E106E exonic ENSMUSG00000058385 synonymous SNV ENSMUST00000079251:c.G318A:p.E106E 13qA3.1 NA NA chr13 23663619 GGAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 88 0 20 35.058617 0.565217 0.02 -0.201692 10 13 293 357 60 60 0 0 GG 15.340248 51 0 1423 0 KEEP + Hist1h2bg YES AID_2 chr13 23663660 23663660 C T exonic Hist1h2bg nonsynonymous SNV NM_178196:c.C359T:p.T120I exonic Hist1h2bg nonsynonymous SNV uc007pue.2:c.C359T:p.T120I exonic ENSMUSG00000058385 nonsynonymous SNV ENSMUST00000079251:c.C359T:p.T120I 13qA3.1 NA NA chr13 23663660 TCAxTAA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 85 0 0 10.669609 0.185185 0.02 -0.236787 22 5 640 139 60 60 0 0 CC 12.934389 43 0 1211 0 KEEP + Hist1h2bg YES AID_2 chr13 23663683 23663683 G A UTR3 Hist1h2bg NA NA UTR3 Hist1h2bg NA NA UTR3 ENSMUSG00000058385 NA NA 13qA3.1 NA NA chr13 23663683 TGAxTTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 73 0 0 13.702709 0.25 0.02 -0.210468 18 6 516 167 60 60 0 0 GG 11.429627 38 0 1056 0 KEEP + Hist1h2bg YES AID_2 chr13 23667930 23667930 G A exonic Hist1h3d nonsynonymous SNV NM_178204:c.G260A:p.S87N exonic Hist1h3d nonsynonymous SNV uc007pug.1:c.G260A:p.S87N exonic ENSMUSG00000062808 nonsynonymous SNV ENSMUST00000105105:c.G260A:p.S87N 13qA3.1 NA NA chr13 23667930 AGAxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 69 0 15 21.19936 0.421053 0.02 -0.166639 11 8 329 230 60 60 0 0 GG 9.92522 33 0 925 0 KEEP + Hist1h3d YES AID_2 chr13 23668304 23668304 C T downstream Hist1h3d NA NA downstream Hist1h3d NA NA UTR3 ENSMUSG00000062808 NA NA 13qA3.1 NA NA chr13 23668304 TTGxTTA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 98 0 0 20.86259 0.264706 0.02 -0.298123 25 9 722 251 60 60 0 0 CC 15.340403 51 0 1431 0 KEEP NA Hist1h3d YES AID_2 chr13 23673645 23673645 C T exonic Hist1h4d synonymous SNV NM_175654:c.C175T:p.L59L exonic Hist1h4d synonymous SNV uc007puh.1:c.C175T:p.L59L exonic ENSMUSG00000061482 synonymous SNV ENSMUST00000102968:c.C175T:p.L59L 13qA3.1 NA NA chr13 23673645 GTGxTGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 180 4 0 11.044808 0.090909 0.02 1.108674 60 6 1739 169 60 60 0 0 CC 24.047679 80 0 2233 0 KEEP + Hist1h4d YES AID_2 chr13 23673901 23673901 G A downstream Hist1h4d NA NA downstream Hist1h4d NA NA upstream;downstream ENSMUSG00000091963;ENSMUSG00000061482 NA NA 13qA3.1 NA NA chr13 23673901 CTGxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387356 0.387407 0.999869 47 0 0 17.215606 0.35 0.02 -0.175391 13 7 375 195 60 60 0 0 GG 6.28937 21 0 549 0 KEEP NA Hist1h4d YES AID_2 chr13 23677455 23677455 C A exonic Hist1h2be nonsynonymous SNV NM_001177653:c.G371T:p.S124I exonic Hist1h2be nonsynonymous SNV uc007pui.2:c.G371T:p.S124I exonic ENSMUSG00000047246 nonsynonymous SNV ENSMUST00000051091:c.G371T:p.S124I 13qA3.1 NA NA chr13 23677455 GAGxTGG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 80 2 2 16.285079 0.241379 0.02 -0.262825 22 7 614 199 60 60 0 0 CC 12.031275 40 0 1111 0 KEEP - Hist1h2be NO AID_2 chr13 23713880 23713880 C T exonic Hist1h1e nonsynonymous SNV NM_015787:c.G487A:p.A163T exonic Hist1h1e nonsynonymous SNV uc007puj.2:c.G487A:p.A163T exonic ENSMUSG00000051627 nonsynonymous SNV ENSMUST00000062045:c.G487A:p.A163T 13qA3.1 NA NA chr13 23713880 CTGxAGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552849 0.552887 0.999931 55 0 0 8.037972 0.16 0.02 -0.219253 21 4 620 109 60 60 0 0 CC 7.519761 25 0 702 0 KEEP - Hist1h1e YES AID_2 chr13 23714074 23714074 C T exonic Hist1h1e nonsynonymous SNV NM_015787:c.G293A:p.G98D exonic Hist1h1e nonsynonymous SNV uc007puj.2:c.G293A:p.G98D exonic ENSMUSG00000051627 nonsynonymous SNV ENSMUST00000062045:c.G293A:p.G98D 13qA3.1 NA NA chr13 23714074 GTGxCCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 35 0 0 25.026153 0.642857 0.02 -0.122762 5 9 147 247 60 60 0 0 CC 4.812403 16 0 442 0 KEEP - Hist1h1e YES AID_2 chr13 23714123 23714123 G A exonic Hist1h1e nonsynonymous SNV NM_015787:c.C244T:p.L82F exonic Hist1h1e nonsynonymous SNV uc007puj.2:c.C244T:p.L82F exonic ENSMUSG00000051627 nonsynonymous SNV ENSMUST00000062045:c.C244T:p.L82F 13qA3.1 NA NA chr13 23714123 CGAxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 39 0 0 11.938717 0.333333 0.02 -0.131543 10 5 290 137 60 60 0 0 GG 5.413967 18 0 500 0 KEEP - Hist1h1e YES AID_2 chr13 23776444 23776444 G A exonic Hist1h2bc nonsynonymous SNV NM_023422:c.G344A:p.G115D exonic Hist1h2bc nonsynonymous SNV uc007pul.1:c.G344A:p.G115D exonic ENSMUSG00000018102 nonsynonymous SNV ENSMUST00000018246:c.G344A:p.G115D 13qA3.1 NA NA chr13 23776444 AGGxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291961 0.292001 0.999863 68 2 24 11.769782 0.3125 0.02 -0.149078 11 5 316 137 60 60 0 0 GG 10.826656 36 0 979 0 KEEP + Hist1h2bc YES AID_2 chr13 23776466 23776466 C A exonic Hist1h2bc stopgain SNV NM_023422:c.C366A:p.Y122X exonic Hist1h2bc stopgain SNV uc007pul.1:c.C366A:p.Y122X exonic ENSMUSG00000018102 stopgain SNV ENSMUST00000018246:c.C366A:p.Y122X 13qA3.1 NA NA chr13 23776466 GTAxACC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353909 0.353947 0.999892 59 2 13 6.510922 0.166667 0.02 -0.166632 15 3 438 86 60 60 0 0 CC 9.625662 32 0 903 0 KEEP + Hist1h2bc NO AID_2 chr13 23837077 23837077 C T exonic Hist1h3c nonsynonymous SNV NM_175653:c.G290A:p.S97N exonic Hist1h3c nonsynonymous SNV uc007pur.1:c.G290A:p.S97N exonic ENSMUSG00000069310 nonsynonymous SNV ENSMUST00000091752:c.G290A:p.S97N 13qA3.1 NA NA chr13 23837077 TCGxTCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 161 0 4 14.979821 0.160714 0.02 1.205554 47 9 1381 213 57 57 0 0 CC 21.957281 73 0 2042 0 KEEP - Hist1h3c YES AID_2 chr13 23843426 23843426 G T UTR3 Hist1h2ab NA NA UTR3 Hist1h2ab NA NA UTR3 ENSMUSG00000061615 NA NA 13qA3.1 NA NA chr13 23843426 AAAxTTA G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 81 0 0 11.254622 0.2 0.02 -0.219241 20 5 570 143 60 60 0 0 GG 14.42492 48 0 1309 0 KEEP + Hist1h2ab NO AID_2 chr13 23852852 23852852 G A exonic Hist1h4a synonymous SNV NM_178192:c.C175T:p.L59L exonic Hist1h4a synonymous SNV uc007pux.1:c.C175T:p.L59L exonic ENSMUSG00000060093 synonymous SNV ENSMUST00000102964:c.C175T:p.L59L 13qA3.1 NA NA chr13 23852852 TCAxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 260 0 79 8.707105 0.072464 0.02 1.090068 64 5 1887 141 36 36 0 0 GG 36.092698 120 0 3361 0 KEEP - Hist1h4a YES AID_2 chr13 29044510 29044510 C G exonic Sox4 nonsynonymous SNV NM_009238:c.G381C:p.K127N exonic Sox4 nonsynonymous SNV uc007pyk.1:c.G381C:p.K127N exonic ENSMUSG00000076431 nonsynonymous SNV ENSMUST00000067230:c.G381C:p.K127N 13qA3.1 NA NA chr13 29044510 GTAxTTG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 353 2 0 22.699369 0.089552 0.02 2.403259 122 12 3462 345 60 60 0 0 CC 47.511662 158 0 4301 0 KEEP - Sox4 NO AID_2 chr13 3932054 3932054 T G exonic Tubal3 nonsynonymous SNV NM_001033879:c.T587G:p.L196R exonic Tubal3 nonsynonymous SNV uc007pjg.2:c.T587G:p.L196R exonic ENSMUSG00000021216 nonsynonymous SNV ENSMUST00000021639:c.T587G:p.L196R 13qA1 NA NA chr13 3932054 TCCxCAC T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 207 0 0 7.885951 0.071429 0.02 1.180207 65 5 1853 133 60 60 0 0 TT 26.452511 88 0 2436 0 KEEP + Tubal3 NO AID_2 chr13 46061402 46061402 G A intergenic "Atxn1(dist=1042),Stmnd1(dist=307688)" NA NA intergenic "Atxn1(dist=1057),Gm1574(dist=307688)" NA NA exonic ENSMUSG00000038152 nonsynonymous SNV ENSMUST00000038032:c.G229A:p.A77T 13qA5 NA NA chr13 46061402 GTGxCTA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 80 0 0 15.603015 0.25 0.02 -0.245551 21 7 609 191 60 60 0 0 GG 12.871345 43 0 1165 0 KEEP NA Atxn1 YES AID_2 chr13 46061463 46061463 G A intergenic "Atxn1(dist=1103),Stmnd1(dist=307627)" NA NA intergenic "Atxn1(dist=1118),Gm1574(dist=307627)" NA NA exonic ENSMUSG00000038152 nonsynonymous SNV ENSMUST00000038032:c.G290A:p.S97N 13qA5 NA NA chr13 46061463 TAAxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 86 0 0 13.347279 0.2 0.02 -0.271723 24 6 686 170 60 60 0 0 GG 11.111883 37 0 999 0 KEEP NA Atxn1 YES AID_2 chr13 46894678 46894678 C T exonic Kif13a nonsynonymous SNV NM_010617:c.G2188A:p.A730T exonic Kif13a nonsynonymous SNV uc007qhn.1:c.G2188A:p.A730T exonic ENSMUSG00000021375 nonsynonymous SNV ENSMUST00000056978:c.G2188A:p.A730T 13qA5 NA NA chr13 46894678 TGGxGGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 96 0 0 79.140546 0.7 0.02 -0.368197 12 28 300 764 60 60 0 0 CC 11.721139 39 0 993 0 KEEP - Kif13a YES AID_2 chr13 51942195 51942195 C T exonic Gadd45g nonsynonymous SNV NM_011817:c.C47T:p.T16I exonic Gadd45g nonsynonymous SNV uc007qmq.2:c.C47T:p.T16I exonic ENSMUSG00000021453 nonsynonymous SNV ENSMUST00000021903:c.C47T:p.T16I 13qA5 NA NA chr13 51942195 GCAxAGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 298 0 0 84.342329 0.330275 0.02 2.238812 73 36 2149 972 60 60 0 0 CC 39.072616 130 0 3631 0 KEEP + Gadd45g YES AID_2 chr13 51942718 51942718 C T intronic Gadd45g NA NA intronic Gadd45g NA NA intronic ENSMUSG00000021453 NA NA 13qA5 NA NA chr13 51942718 TCAxAGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 91 0 0 8.064036 0.153846 0.02 -0.245555 22 4 648 110 60 60 0 0 CC 15.023262 50 0 1371 0 KEEP + Gadd45g YES AID_2 chr13 51942725 51942725 C T exonic Gadd45g stopgain SNV NM_011817:c.C58T:p.Q20X exonic Gadd45g stopgain SNV uc007qmq.2:c.C58T:p.Q20X exonic ENSMUSG00000021453 stopgain SNV ENSMUST00000021903:c.C58T:p.Q20X 13qA5 NA NA chr13 51942725 ATGxAGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 95 0 0 7.49423 0.148148 0.02 -0.254317 23 4 673 105 60 60 0 0 CC 15.919308 53 0 1441 0 KEEP + Gadd45g YES AID_2 chr13 51942827 51942827 G A intronic Gadd45g NA NA intronic Gadd45g NA NA intronic ENSMUSG00000021453 NA NA 13qA5 NA NA chr13 51942827 TGAxTGT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 94 0 0 17.848618 0.228571 0.02 -0.315694 27 8 771 222 60 60 0 0 GG 15.017686 50 0 1362 0 KEEP + Gadd45g YES AID_2 chr13 54723287 54723287 G A intronic Faf2 NA NA intronic "Faf2,mKIAA0887" NA NA exonic ENSMUSG00000025873 nonsynonymous SNV ENSMUST00000135015:c.G86A:p.S29N 13qB1 NA NA chr13 54723287 GCAxCCC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999999 71 0 0 41.794889 0.615385 0.02 -0.227919 10 16 289 417 60 60 0 0 GG 10.526196 35 0 957 0 KEEP + Faf2 YES AID_2 chr13 65442544 65442544 C A intergenic "Zfp369(dist=43441),Gm10324(dist=771845)" NA NA intergenic "Zfp369(dist=43441),AK145544(dist=57746)" NA NA intergenic "ENSMUSG00000021514(dist=37015),ENSMUSG00000090514(dist=38157)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442544 AACxTTT C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 131 7 31 7.268063 0.1 0.02 -0.350818 36 4 1066 110 60 20 0 0 CC 20.154559 67 0 1920 0 KEEP NA Zfp369 NO AID_2 chr13 65611713 65611713 T C intergenic "Zfp369(dist=212610),Gm10324(dist=602676)" NA NA ncRNA_intronic AK145544 NA NA intergenic "ENSMUSG00000090514(dist=58049),ENSMUSG00000063905(dist=1901)" NA NA 13qB3 "Score=0.976682;Name=No.33504,chr13:65690476" NA chr13 65611713 TCAxGTG T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 242 5 43 24.160282 0.179487 0.02 0.913981 64 14 1746 334 43 23 0 0 TT 27.654913 92 0 2452 0 KEEP - Zfp369 NO AID_2 chr13 66344932 66344932 T A intergenic "Gm10324(dist=121160),2410141K09Rik(dist=174118)" NA NA ncRNA_intronic AK145544 NA NA upstream ENSMUSG00000090502 NA NA 13qB3 "Score=0.983687;Name=No.34212,chr13:66276368" NA chr13 66344932 TGCxCAC T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99519 0.998696 0.99649 172 8 52 10.781991 0.085714 0.02 1.028708 64 6 1850 168 60 29 0 0 TT 7.499707 25 0 682 0 KEEP - Gm10324 NO AID_2 chr13 66542024 66542024 C T UTR5 2410141K09Rik NA NA ncRNA_exonic AK010804 NA NA UTR5 ENSMUSG00000074832 NA NA 13qB3 "Score=0.975838;Name=No.33715,chr13:65695984" NA chr13 66542024 ACAxAGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989331 0.996233 0.993072 147 4 40 17.166413 0.132353 0.02 1.001481 59 9 1651 244 60 43 0 0 CC 7.21194 24 0 668 0 KEEP - 2410141K09Rik YES AID_2 chr14 121990525 121990525 A G intronic Dock9 NA NA intronic Dock9 NA NA intronic ENSMUSG00000025558 NA NA 14qE5 NA NA chr14 121990525 TTAxGTC A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 96 0 0 27.349623 0.323529 0.02 -0.298096 23 11 664 314 60 60 0 0 AA 12.332311 41 0 1145 0 KEEP - Dock9 NO AID_2 chr14 20420773 20420773 T A exonic Gm5458 nonsynonymous SNV NM_001024706:c.A236T:p.D79V exonic Gm5458 nonsynonymous SNV uc011zgi.1:c.A236T:p.D79V exonic ENSMUSG00000071574 nonsynonymous SNV ENSMUST00000096121:c.A236T:p.D79V 14qA3 "Score=0.986572;Name=No.49681,chr14:7155478" NA chr14 20420773 ATGxCAT T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1613 184 651 217.795267 0.29582 0.02 7.42738 219 92 6146 2559 46 46 0 0 TT 212.934432 708 0 19576 0 KEEP - Gm5458 NO AID_2 chr14 21656382 21656382 C T intronic Plau NA NA intronic Plau NA NA intronic ENSMUSG00000021822 NA NA 14qA3 NA NA chr14 21656382 GCAxCAT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 168 6 0 8.317156 0.053191 0.02 0.870811 89 5 2607 144 60 60 0 0 CC 17.442692 58 0 1594 0 KEEP + Plau YES AID_2 chr14 22804332 22804332 C T exonic Zfp503 nonsynonymous SNV NM_145459:c.G1737A:p.M579I exonic Zfp503 nonsynonymous SNV uc007slv.1:c.G1737A:p.M579I exonic ENSMUSG00000039081 nonsynonymous SNV ENSMUST00000043409:c.G1737A:p.M579I 14qA3 NA NA chr14 22804332 GTGxATG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 105 0 0 21.248113 0.232558 0.02 -0.376935 33 10 938 266 60 60 0 0 CC 15.339491 51 0 1427 0 KEEP - Zfp503 YES AID_2 chr14 22804448 22804448 G C exonic Zfp503 nonsynonymous SNV NM_145459:c.C1621G:p.L541V exonic Zfp503 nonsynonymous SNV uc007slv.1:c.C1621G:p.L541V exonic ENSMUSG00000039081 nonsynonymous SNV ENSMUST00000043409:c.C1621G:p.L541V 14qA3 NA NA chr14 22804448 GCAxCTC G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 113 0 0 7.453134 0.088889 0.02 -0.394659 41 4 1198 114 60 60 0 0 GG 15.615365 52 0 1440 0 KEEP - Zfp503 NO AID_2 chr14 22805334 22805334 C T exonic Zfp503 nonsynonymous SNV NM_145459:c.G735A:p.M245I exonic Zfp503 nonsynonymous SNV uc007slv.1:c.G735A:p.M245I exonic ENSMUSG00000039081 nonsynonymous SNV ENSMUST00000112440:c.G735A:p.M245I 14qA3 NA NA chr14 22805334 CAGxATG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043483 0.043787 0.993072 24 0 0 10.830515 0.571429 0.02 -0.061387 3 4 91 110 60 60 0 0 CC 3.307785 11 0 305 0 KEEP - Zfp503 YES AID_2 chr14 28293856 28293856 G T exonic D14Abb1e nonsynonymous SNV NM_028945:c.G4470T:p.E1490D exonic D14Abb1e nonsynonymous SNV uc007stu.2:c.G4470T:p.E1490D exonic ENSMUSG00000040651 nonsynonymous SNV ENSMUST00000022450:c.G4470T:p.E1490D 14qA3 NA NA chr14 28293856 GGAxCTG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 0.999999 73 0 0 18.842307 0.285714 0.02 -0.245559 20 8 586 223 60 60 0 0 GG 10.827253 36 0 998 0 KEEP + D14Abb1e NO AID_2 chr14 32592140 32592140 G A exonic Ankrd28 synonymous SNV NM_001024604:c.C79T:p.L27L exonic Ankrd28 synonymous SNV uc007sya.1:c.C79T:p.L27L exonic ENSMUSG00000014496 synonymous SNV ENSMUST00000014640:c.C79T:p.L27L 14qB NA NA chr14 32592140 TTAxTGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582877 0.58293 0.999909 67 0 0 11.359762 0.192308 0.02 -0.228026 21 5 613 145 60 60 0 0 GG 7.219501 24 0 680 0 KEEP - Ankrd28 YES AID_2 chr14 55195174 55195174 G A exonic Ajuba nonsynonymous SNV NM_010590:c.C928T:p.P310S exonic Jub nonsynonymous SNV uc007twj.1:c.C928T:p.P310S exonic ENSMUSG00000022178 nonsynonymous SNV ENSMUST00000054487:c.C928T:p.P310S 14qC3 NA NA chr14 55195174 AGGxTTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.99986 47 0 0 8.763803 0.2 0.02 -0.175391 16 4 458 112 60 60 0 0 GG 5.678629 19 0 482 0 KEEP - Ajuba YES AID_2 chr14 56336098 56336098 G A intronic Rabggta NA NA intronic Rabggta NA NA intronic ENSMUSG00000040472 NA NA 14qC3 NA NA chr14 56336098 GAGxAGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 67 2 0 25.441065 0.37037 0.02 -0.236791 17 10 501 284 60 60 0 0 GG 9.325572 31 0 885 0 KEEP - Rabggta YES AID_2 chr14 66626923 66626923 T C exonic Gulo nonsynonymous SNV NM_178747:c.A58G:p.S20G exonic Gulo nonsynonymous SNV uc007ujt.1:c.A58G:p.S20G exonic ENSMUSG00000034450 nonsynonymous SNV ENSMUST00000059970:c.A58G:p.S20G 14qD1 NA NA chr14 66626923 GACxGCA T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 160 4 0 33.179491 0.220588 0.02 1.188438 53 15 1525 416 60 60 0 0 TT 17.144063 57 0 1578 0 KEEP - Gulo NO AID_2 chr14 67858315 67858315 G A exonic Ebf2 nonsynonymous SNV NM_001276387:c.G469A:p.E157K exonic Ebf2 nonsynonymous SNV uc007ukx.1:c.G469A:p.E157K exonic ENSMUSG00000022053 nonsynonymous SNV ENSMUST00000022637:c.G469A:p.E157K 14qD1 NA NA chr14 67858315 CACxAGG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 155 0 0 209.619468 1 0.02 1.134531 0 64 0 1792 0 60 0 0 GG 18.039657 60 0 1622 0 KEEP + Ebf2 YES AID_2 chr14 70477345 70477345 G A exonic Egr3 nonsynonymous SNV NM_018781:c.G94A:p.A32T exonic Egr3 nonsynonymous SNV uc007unb.1:c.G94A:p.A32T exonic ENSMUSG00000033730 nonsynonymous SNV ENSMUST00000035908:c.G94A:p.A32T 14qD2 NA NA chr14 70477345 AGCxCGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 266 0 0 30.488789 0.136752 0.02 2.250328 101 16 2778 431 60 60 0 0 GG 33.265698 111 0 2831 0 KEEP + Egr3 YES AID_2 chr14 76410495 76410495 G T exonic Gtf2f2 nonsynonymous SNV NM_026816:c.C58A:p.L20M exonic Gtf2f2 nonsynonymous SNV uc007urb.1:c.C58A:p.L20M exonic ENSMUSG00000067995 nonsynonymous SNV ENSMUST00000088922:c.C58A:p.L20M 14qD3 NA NA chr14 76410495 CCAxCCA G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 133 0 0 30.794548 0.264151 0.02 1.222404 39 14 1126 374 60 60 0 0 GG 15.641572 52 0 1461 0 KEEP - Gtf2f2 NO AID_2 chr14 78684037 78684037 G A intronic Tnfsf11 NA NA intronic Tnfsf11 NA NA intronic ENSMUSG00000022015 NA NA 14qD3 NA NA chr14 78684037 AATxTAA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 112 0 0 10.843365 0.113208 0.02 1.03519 47 6 1383 161 60 60 0 0 GG 12.634226 42 0 1196 0 KEEP - Tnfsf11 YES AID_2 chr14 79852324 79852324 G A exonic Zbtbd6 synonymous SNV NM_001034882:c.G651A:p.E217E exonic Gm5465 synonymous SNV uc007usz.1:c.G651A:p.E217E exonic ENSMUSG00000075502 synonymous SNV ENSMUST00000100359:c.G651A:p.E217E 14qD3 "Score=0.982309;Name=No.53417,chr14:79826366" NA chr14 79852324 GGAxTAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612323 0.612407 0.999863 67 0 9 8.404074 0.148148 0.02 -0.235439 23 4 653 114 46 46 0 0 GG 7.817626 26 0 713 0 KEEP + Zbtbd6 YES AID_2 chr15 101398507 101398507 T G exonic Krt75 nonsynonymous SNV NM_133357:c.A1253C:p.E418A exonic Krt75 nonsynonymous SNV uc007xtp.1:c.A1253C:p.E418A exonic ENSMUSG00000022986 nonsynonymous SNV ENSMUST00000042957:c.A1253C:p.E418A 15qF2 NA NA chr15 101398507 TCTxCAA T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 145 0 0 26.954528 0.179104 0.02 1.394757 55 12 1572 349 60 60 0 0 TT 19.53654 65 0 1755 0 KEEP - Krt75 NO AID_2 chr15 102147652 102147652 C T intronic Espl1 NA NA intronic Espl1 NA NA intronic ENSMUSG00000058290 NA NA 15qF3 NA NA chr15 102147652 ATGxGGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 113 1 0 7.196158 0.090909 0.02 -0.385599 40 4 1019 111 60 60 0 0 CC 15.61936 52 0 1269 0 KEEP + Espl1 YES AID_2 chr15 25552715 25552715 G A UTR5 Myo10 NA NA UTR5 "Myo10,myo10" NA NA UTR5 ENSMUSG00000022272 NA NA 15qB1 NA NA chr15 25552715 TGCxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 86 0 0 10.856065 0.208333 0.02 -0.219056 19 5 469 138 60 60 0 0 GG 10.433461 45 1 1055 28 KEEP + Myo10 YES AID_2 chr15 25552716 25552716 C T UTR5 Myo10 NA NA UTR5 "Myo10,myo10" NA NA UTR5 ENSMUSG00000022272 NA NA 15qB1 NA NA chr15 25552716 GCGxTGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 88 0 0 10.156644 0.2 0.02 -0.227903 20 5 558 132 60 60 0 0 CC 14.119658 47 0 1268 0 KEEP + Myo10 YES AID_2 chr15 25552735 25552735 C T UTR5 Myo10 NA NA UTR5 "Myo10,myo10" NA NA UTR5 ENSMUSG00000022272 NA NA 15qB1 NA NA chr15 25552735 GAGxCGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 102 0 0 9.720341 0.166667 0.02 -0.271806 25 5 699 132 60 60 0 0 CC 15.897754 53 0 1397 0 KEEP + Myo10 YES AID_2 chr15 34372738 34372738 C T ncRNA_intronic Gm12191 NA NA intronic Rpl30 NA NA intronic ENSMUSG00000058600 NA NA 15qB3.1 NA NA chr15 34372738 GCTxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 78 0 0 13.250349 0.193548 0.02 -0.271887 25 6 746 170 60 60 0 0 CC 11.422121 38 0 1072 0 KEEP - Gm12191 YES AID_2 chr15 53176781 53176781 C T exonic Ext1 synonymous SNV NM_010162:c.G138A:p.L46L exonic Ext1 synonymous SNV uc007vrh.1:c.G138A:p.L46L exonic ENSMUSG00000061731 synonymous SNV ENSMUST00000077273:c.G138A:p.L46L 15qC NA NA chr15 53176781 GTGxAAG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 85 0 0 11.97158 0.181818 0.02 -0.289403 27 6 794 159 60 60 0 0 CC 11.102017 37 0 1011 0 KEEP - Ext1 YES AID_2 chr15 59481015 59481015 G C exonic Trib1 nonsynonymous SNV NM_144549:c.G298C:p.A100P exonic Trib1 nonsynonymous SNV uc007vxw.1:c.G298C:p.A100P exonic ENSMUSG00000032501 nonsynonymous SNV ENSMUST00000067543:c.G298C:p.A100P 15qD1 NA NA chr15 59481015 CTAxCTG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 75 2 0 8.658555 0.137931 0.02 -0.254339 25 4 742 118 60 60 0 0 GG 9.925922 33 0 920 0 KEEP + Trib1 NO AID_2 chr15 61817420 61817420 C T UTR5 Myc NA NA UTR5 Myc NA NA UTR5 ENSMUSG00000022346 NA NA 15qD1 NA NA chr15 61817420 GTTxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 256 0 0 132.371986 0.49 0.02 0.916528 51 49 1507 1391 60 60 0 0 CC 37.284582 124 0 3508 0 KEEP + Myc YES AID_2 chr15 61817425 61817425 C T UTR5 Myc NA NA UTR5 Myc NA NA UTR5 ENSMUSG00000022346 NA NA 15qD1 NA NA chr15 61817425 CTGxCTC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 269 0 0 54.00608 0.237624 0.02 2.504768 77 24 2198 666 60 60 0 0 CC 39.100155 130 0 3579 0 KEEP + Myc YES AID_2 chr15 61819831 61819831 C G exonic Myc nonsynonymous SNV NM_001177352:c.C755G:p.S252C exonic Myc nonsynonymous SNV uc007vyi.1:c.C755G:p.S252C exonic ENSMUSG00000022346 nonsynonymous SNV ENSMUST00000160009:c.C755G:p.S252C 15qD1 NA NA chr15 61819831 ACTxTGG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 73 0 0 8.936998 0.16 0.02 -0.228037 21 4 627 118 60 60 0 0 CC 9.616495 32 0 896 0 KEEP + Myc NO AID_2 chr15 76025907 76025907 C T exonic Plec nonsynonymous SNV NM_201394:c.G59A:p.S20N exonic Plec nonsynonymous SNV uc007wir.2:c.G59A:p.S20N exonic ENSMUSG00000022565 nonsynonymous SNV ENSMUST00000023226:c.G59A:p.S20N 15qD3 NA NA chr15 76025907 GAGxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 186 0 0 41.859191 0.223529 0.02 0.949958 66 19 1918 524 60 60 0 0 CC 20.454946 68 0 1923 0 KEEP - Plec YES AID_2 chr15 80042028 80042028 C T exonic Mgat3 nonsynonymous SNV NM_010795:c.C625T:p.P209S exonic Mgat3 nonsynonymous SNV uc007wvf.1:c.C625T:p.P209S exonic ENSMUSG00000042428 nonsynonymous SNV ENSMUST00000044970:c.C625T:p.P209S 15qE1 NA NA chr15 80042028 GTAxCGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 104 0 0 19.531165 0.191489 0.02 -0.41206 38 9 1055 252 60 60 0 0 CC 11.666583 39 0 1041 0 KEEP + Mgat3 YES AID_2 chr15 85068089 85068089 G A exonic Fbln1 nonsynonymous SNV NM_010180:c.G980A:p.C327Y exonic Fbln1 nonsynonymous SNV uc007xdb.2:c.G980A:p.C327Y exonic ENSMUSG00000006369 nonsynonymous SNV ENSMUST00000057410:c.G980A:p.C327Y 15qE2 NA NA chr15 85068089 CATxCAT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 61 0 0 15.963145 0.269231 0.02 -0.228021 19 7 565 192 60 60 0 0 GG 6.918112 23 0 641 0 KEEP + Fbln1 YES AID_2 chr15 99058946 99058946 G C exonic Kcnh3 nonsynonymous SNV NM_010601:c.G622C:p.A208P exonic Kcnh3 nonsynonymous SNV uc011zzc.1:c.G622C:p.A208P exonic ENSMUSG00000037579 nonsynonymous SNV ENSMUST00000041415:c.G622C:p.A208P 15qF1 NA NA chr15 99058946 GTCxCTG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 195 2 0 51.848349 0.272727 0.02 1.10196 56 21 1502 614 60 60 0 0 GG 24.009552 80 0 2028 0 KEEP + Kcnh3 NO AID_2 chr16 30067468 30067468 G A exonic Hes1 nonsynonymous SNV NM_008235:c.G803A:p.G268D exonic Hes1 nonsynonymous SNV uc007ywl.1:c.G803A:p.G268D exonic ENSMUSG00000022528 nonsynonymous SNV ENSMUST00000023171:c.G803A:p.G268D 16qB2 NA NA chr16 30067468 GTGxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 177 0 0 78.056984 0.527273 0.02 1.2139 26 29 722 807 60 60 0 0 GG 29.458815 98 0 2691 0 KEEP + Hes1 YES AID_2 chr16 36875667 36875667 G A upstream Eaf2 NA NA ncRNA_exonic AK089379 NA NA exonic ENSMUSG00000078096 synonymous SNV ENSMUST00000023534:c.G441A:p.G147G 16qB3 NA NA chr16 36875667 CGGxGAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024071 0.024074 0.999892 32 2 0 12.019465 0.8 0.02 -0.043844 1 4 30 112 60 60 0 0 GG 6.91863 23 0 649 0 KEEP + Eaf2 YES AID_2 chr16 92400108 92400108 T A intronic Rcan1 NA NA intronic Rcan1 NA NA intronic ENSMUSG00000022951 NA NA 16qC4 NA NA chr16 92400108 AAAxGCT T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 87 0 0 11.681361 0.238095 0.02 -0.184141 16 5 437 143 60 60 0 0 TT 15.035794 50 0 1339 0 KEEP - Rcan1 NO AID_2 chr16 92400109 92400109 G C intronic Rcan1 NA NA intronic Rcan1 NA NA intronic ENSMUSG00000022951 NA NA 16qC4 NA NA chr16 92400109 AATxCTC G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 87 0 0 11.802 0.25 0.02 -0.17541 15 5 447 143 60 60 0 0 GG 15.041317 50 0 1430 0 KEEP - Rcan1 NO AID_2 chr17 11828206 11828206 C A exonic Park2 nonsynonymous SNV NM_016694:c.C762A:p.H254Q exonic Park2 nonsynonymous SNV uc012ajz.1:c.C192A:p.H64Q exonic ENSMUSG00000023826 nonsynonymous SNV ENSMUST00000066658:c.C759A:p.H253Q 17qA1 NA NA chr17 11828206 CCAxCGT C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 89 2 0 42.656081 0.625 0.02 -0.210474 9 15 263 424 60 60 0 0 CC 15.035758 50 0 1356 0 KEEP + Park2 NO AID_2 chr17 23496748 23496748 T A exonic Vmn2r115 nonsynonymous SNV NM_001104579:c.T2227A:p.S743T exonic Vmn2r115 nonsynonymous SNV uc009vbs.1:c.T2227A:p.S743T exonic ENSMUSG00000091076 nonsynonymous SNV ENSMUST00000168175:c.T2227A:p.S743T 17qA3.3 "Score=0.924606;Name=No.65595,chr17:23572303" NA chr17 23496748 GGTxCAG T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 482 6 12 82.116234 0.223529 0.02 3.047068 132 38 3729 1032 60 60 0 0 TT 70.682505 235 0 6518 0 KEEP + Vmn2r115 NO AID_2 chr17 23608237 23608237 C G exonic Vmn2r117 nonsynonymous SNV NM_001104581:c.G1561C:p.G521R exonic Vmn2r117 nonsynonymous SNV uc009vbu.1:c.G1561C:p.G521R exonic ENSMUSG00000091407 nonsynonymous SNV ENSMUST00000171996:c.G1561C:p.G521R 17qA3.3 "Score=0.971132;Name=No.65604,chr17:23582224" NA chr17 23608237 GACxACA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 774 32 38 52.877947 0.115385 0.02 6.555847 207 27 6101 763 60 43 0 0 CC 96.532912 321 0 9137 0 KEEP - Vmn2r117 NO AID_2 chr17 26645079 26645079 G A exonic Dusp1 nonsynonymous SNV NM_013642:c.C190T:p.H64Y exonic Dusp1 nonsynonymous SNV uc008bee.2:c.C190T:p.H64Y exonic ENSMUSG00000024190 nonsynonymous SNV ENSMUST00000025025:c.C190T:p.H64Y 17qA3.3 NA NA chr17 26645079 TATxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.999859 40 0 0 10.736407 0.333333 0.02 -0.1315 10 5 294 125 60 60 0 0 GG 5.40889 18 0 490 0 KEEP - Dusp1 YES AID_2 chr17 35959223 35959223 G A exonic Ier3 nonsynonymous SNV NM_133662:c.G451A:p.A151T exonic Ier3 nonsynonymous SNV uc008cio.1:c.G451A:p.A151T exonic ENSMUSG00000003541 nonsynonymous SNV ENSMUST00000003635:c.G451A:p.A151T 17qB1 NA NA chr17 35959223 AAAxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 120 0 0 15.56428 0.181818 0.02 -0.385779 36 8 1030 208 60 60 0 0 GG 19.543486 65 0 1763 0 KEEP + Ier3 YES AID_2 chr17 35961042 35961042 C T intronic Flot1 NA NA intronic Flot1 NA NA intronic ENSMUSG00000059714 NA NA 17qB1 NA NA chr17 35961042 TTGxCAC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 131 0 0 16.832684 0.195122 0.02 -0.359547 33 8 945 218 60 60 0 0 CC 21.605253 72 0 1926 0 KEEP + Flot1 YES AID_2 chr17 36175958 36175958 A C exonic "H2-T22,H2-T9" synonymous SNV NM_010397:c.T1086G:p.T362T exonic "H2-T10,H2-T22,H2-T9" synonymous SNV uc008cjt.1:c.T912G:p.T304T exonic ENSMUSG00000056116 synonymous SNV ENSMUST00000166442:c.T981G:p.T327T 17qB1 "Score=0.951462;Name=No.65666,chr17:36245854" NA chr17 36175958 ACAxGTT A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 798 1 2 12.626096 0.038168 0.02 5.982899 252 10 7276 262 60 60 0 0 AA 107.611667 358 0 9980 0 KEEP - H2-T22 NO AID_2 chr17 44872166 44872166 G A intronic Runx2 NA NA intronic "Runx2,Runx3" NA NA intronic "ENSMUSG00000039153,ENSMUSG00000092206" NA NA 17qB3 NA NA chr17 44872166 GGGxTGA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 179 0 0 21.412995 0.208333 0.02 1.097976 38 10 1075 273 60 60 0 0 GG 25.257205 84 0 2297 0 KEEP - Runx2 YES AID_2 chr17 44872175 44872175 C T intronic Runx2 NA NA intronic "Runx2,Runx3" NA NA intronic "ENSMUSG00000039153,ENSMUSG00000092206" NA NA 17qB3 NA NA chr17 44872175 AGTxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 178 0 0 31.108991 0.282609 0.02 1.186562 33 13 973 368 60 60 0 0 CC 25.863715 86 0 2445 0 KEEP - Runx2 YES AID_2 chr17 44872200 44872200 G A exonic Runx2 synonymous SNV NM_001145920:c.C384T:p.T128T exonic Runx2 synonymous SNV uc008cpy.2:c.C312T:p.T104T exonic "ENSMUSG00000039153,ENSMUSG00000092206" synonymous SNV ENSMUST00000113571:c.C384T:p.T128T 17qB3 NA NA chr17 44872200 CAGxGTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 175 0 0 17.427823 0.2 0.02 1.311197 32 8 935 223 60 60 0 0 GG 27.956355 93 0 2546 0 KEEP - Runx2 YES AID_2 chr17 44872206 44872206 G A exonic Runx2 synonymous SNV NM_001145920:c.C378T:p.N126N exonic Runx2 synonymous SNV uc008cpy.2:c.C306T:p.N102N exonic "ENSMUSG00000039153,ENSMUSG00000092206" synonymous SNV ENSMUST00000113571:c.C378T:p.N126N 17qB3 NA NA chr17 44872206 CTTxTTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 175 0 0 30.547415 0.325 0.02 1.115019 27 13 786 353 60 60 0 0 GG 28.257766 94 0 2598 0 KEEP - Runx2 YES AID_2 chr17 44872236 44872236 G A exonic Runx2 synonymous SNV NM_001145920:c.C348T:p.C116C exonic Runx2 synonymous SNV uc008cpy.2:c.C276T:p.C92C exonic "ENSMUSG00000039153,ENSMUSG00000092206" synonymous SNV ENSMUST00000113571:c.C348T:p.C116C 17qB3 NA NA chr17 44872236 GGAxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 129 0 0 10.282971 0.178571 0.02 -0.333215 23 5 662 136 60 60 0 0 GG 22.255937 74 0 2049 0 KEEP - Runx2 YES AID_2 chr17 56266911 56266911 G A exonic Sema6b nonsynonymous SNV NM_001130456:c.C1114T:p.P372S exonic Sema6b nonsynonymous SNV uc008dbd.2:c.C1114T:p.P372S exonic ENSMUSG00000001227 nonsynonymous SNV ENSMUST00000001256:c.C1114T:p.P372S 17qD NA NA chr17 56266911 GTGxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 198 3 1 7.997005 0.065789 0.02 1.029277 71 5 2035 136 60 60 0 0 GG 27.649892 92 0 2526 0 KEEP - Sema6b YES AID_2 chr17 68157145 68157145 T G exonic Lama1 nonsynonymous SNV NM_008480:c.T6948G:p.H2316Q exonic Lama1 nonsynonymous SNV uc008dkh.1:c.T6948G:p.H2316Q exonic ENSMUSG00000032796 nonsynonymous SNV ENSMUST00000035471:c.T6948G:p.H2316Q 17qE1.1 NA NA chr17 68157145 CCAxTTC T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 96 2 0 16.756589 0.225806 0.02 -0.271427 24 7 648 206 60 60 0 0 TT 13.531909 45 0 1218 0 KEEP + Lama1 NO AID_2 chr17 73267931 73267931 C T intronic Lbh NA NA intronic Lbh NA NA intronic ENSMUSG00000024063 NA NA 17qE1.3 NA NA chr17 73267931 CTGxGCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 343 5 0 191.788414 0.635514 0.02 2.443986 39 68 1004 1898 60 60 0 0 CC 45.921464 153 0 3803 0 KEEP + Lbh YES AID_2 chr17 74250043 74250043 G A exonic Xdh synonymous SNV NM_011723:c.C2658T:p.F886F exonic Xdh synonymous SNV uc008dnr.1:c.C372T:p.F124F exonic ENSMUSG00000024066 synonymous SNV ENSMUST00000024866:c.C2658T:p.F886F 17qE2 NA NA chr17 74250043 GTGxAAT G A 2-AID-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.970554 0.97082 0.999725 96 0 0 37.424622 0.301887 0.02 1.23082 37 16 1088 439 60 60 0 0 GG 9.927101 33 0 941 0 KEEP - Xdh YES AID_2 chr17 78600180 78600180 G A exonic Crim1 synonymous SNV NM_015800:c.G72A:p.L24L exonic Crim1 synonymous SNV uc008dou.2:c.G72A:p.L24L exonic ENSMUSG00000024074 synonymous SNV ENSMUST00000112498:c.G72A:p.L24L 17qE2 NA NA chr17 78600180 GCTxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 47 0 0 10.397004 0.384615 0.02 -0.131125 8 5 237 118 60 60 0 0 GG 8.422947 28 0 801 0 KEEP + Crim1 YES AID_2 chr17 78600184 78600184 C T exonic Crim1 synonymous SNV NM_015800:c.C76T:p.L26L exonic Crim1 synonymous SNV uc008dou.2:c.C76T:p.L26L exonic ENSMUSG00000024074 synonymous SNV ENSMUST00000112498:c.C76T:p.L26L 17qE2 NA NA chr17 78600184 CTGxTGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.22917 0.229173 0.999988 47 0 0 12.824102 0.384615 0.02 -0.131526 8 5 225 142 60 60 0 0 CC 8.119384 27 0 740 0 KEEP + Crim1 YES AID_2 chr17 78600326 78600326 G A exonic Crim1 nonsynonymous SNV NM_015800:c.G218A:p.S73N exonic Crim1 nonsynonymous SNV uc008dou.2:c.G218A:p.S73N exonic ENSMUSG00000024074 nonsynonymous SNV ENSMUST00000112498:c.G218A:p.S73N 17qE2 NA NA chr17 78600326 AGAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 83 0 0 38.927535 0.483871 0.02 -0.271822 16 15 448 411 60 60 0 0 GG 12.476614 42 0 1092 0 KEEP + Crim1 YES AID_2 chr17 7932025 7932025 C T UTR3 Fndc1 NA NA UTR3 Fndc1 NA NA UTR3 ENSMUSG00000071984 NA NA 17qA1 NA NA chr17 7932025 TAGxGCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139814 0.139832 0.999869 39 0 0 6.850635 0.272727 0.02 -0.103239 8 3 194 82 60 60 0 0 CC 6.312512 21 0 547 0 KEEP - Fndc1 YES AID_2 chr17 80113831 80113831 C T intronic Cyp1b1 NA NA intronic Cyp1b1 NA NA intronic ENSMUSG00000024087 NA NA 17qE3 NA NA chr17 80113831 CTAxCCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12042 0.120436 0.999869 35 0 0 7.232578 0.272727 0.02 -0.096466 8 3 227 86 60 60 0 0 CC 6.306576 21 0 560 0 KEEP - Cyp1b1 YES AID_2 chr17 80115156 80115156 C A upstream Cyp1b1 NA NA ncRNA_exonic AK006637 NA NA upstream ENSMUSG00000024087 NA NA 17qE3 NA NA chr17 80115156 GCGxCAG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054132 0.054137 0.999909 40 0 0 7.632517 0.375 0.02 -0.07016 5 3 146 85 60 60 0 0 CC 7.218126 24 0 656 0 KEEP + Cyp1b1 NO AID_2 chr17 84585996 84585996 C T exonic Zfp36l2 synonymous SNV NM_001001806:c.G552A:p.E184E exonic Zfp36l2 synonymous SNV uc008dsq.1:c.G552A:p.E184E exonic ENSMUSG00000045817 synonymous SNV ENSMUST00000169458:c.G465A:p.E155E 17qE4 NA NA chr17 84585996 CAGxTCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 147 0 0 19.219112 0.2 0.02 -0.394603 36 9 1036 247 60 60 0 0 CC 24.046208 80 0 2202 0 KEEP - Zfp36l2 YES AID_2 chr17 84586155 84586155 C T exonic Zfp36l2 synonymous SNV NM_001001806:c.G393A:p.E131E exonic Zfp36l2 synonymous SNV uc008dsq.1:c.G393A:p.E131E exonic ENSMUSG00000045817 synonymous SNV ENSMUST00000169458:c.G306A:p.E102E 17qE4 NA NA chr17 84586155 GCGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 96 2 0 15.236463 0.212121 0.02 -0.289406 26 7 760 193 60 60 0 0 CC 14.435833 48 0 1341 0 KEEP - Zfp36l2 YES AID_2 chr17 84586423 84586423 G C exonic Zfp36l2 nonsynonymous SNV NM_001001806:c.C125G:p.A42G exonic Zfp36l2 nonsynonymous SNV uc008dsq.1:c.C125G:p.A42G exonic ENSMUSG00000045817 nonsynonymous SNV ENSMUST00000169458:c.C38G:p.A13G 17qE4 NA NA chr17 84586423 GCAxCAG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 82 0 0 28.4534 0.423077 0.02 -0.22802 15 11 443 309 60 60 0 0 GG 12.932747 43 0 1190 0 KEEP - Zfp36l2 NO AID_2 chr17 84586427 84586427 C T exonic Zfp36l2 nonsynonymous SNV NM_001001806:c.G121A:p.A41T exonic Zfp36l2 nonsynonymous SNV uc008dsq.1:c.G121A:p.A41T exonic ENSMUSG00000045817 nonsynonymous SNV ENSMUST00000169458:c.G34A:p.A12T 17qE4 NA NA chr17 84586427 CAGxCAC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 90 0 0 12.856729 0.206897 0.02 -0.25334 23 6 648 164 60 60 0 0 CC 12.568 42 0 1119 0 KEEP - Zfp36l2 YES AID_2 chr17 84586476 84586476 G A exonic Zfp36l2 synonymous SNV NM_001001806:c.C72T:p.N24N exonic Zfp36l2 synonymous SNV uc008dsq.1:c.C72T:p.N24N exonic ENSMUSG00000045817 synonymous SNV ENSMUST00000060366:c.C72T:p.N24N 17qE4 NA NA chr17 84586476 GAGxTTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 110 0 0 14.841778 0.194444 0.02 -0.3157 29 7 831 192 60 60 0 0 GG 15.940025 53 0 1449 0 KEEP - Zfp36l2 YES AID_2 chr17 89401279 89401279 T C exonic Fshr synonymous SNV NM_013523:c.A549G:p.Q183Q exonic Fshr synonymous SNV uc008dvx.1:c.A549G:p.Q183Q exonic ENSMUSG00000032937 synonymous SNV ENSMUST00000035701:c.A549G:p.Q183Q 17qE5 NA NA chr17 89401279 TTCxTGA T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 88 0 0 18.634969 0.333333 0.02 -0.184182 14 7 409 211 60 60 0 0 TT 14.435733 48 0 1336 0 KEEP - Fshr NO AID_2 chr18 22676105 22676105 T G exonic Asxl3 synonymous SNV NM_001167777:c.T2649G:p.T883T exonic Asxl3 synonymous SNV uc008efm.2:c.T2649G:p.T883T exonic ENSMUSG00000045215 synonymous SNV ENSMUST00000097655:c.T2682G:p.T894T 18qA2 NA NA chr18 22676105 TACxTCC T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 53 0 0 10.454125 0.208333 0.02 -0.210459 19 5 543 134 60 60 0 0 TT 6.918087 23 0 640 0 KEEP + Asxl3 NO AID_2 chr18 24859926 24859926 T A exonic Mocos nonsynonymous SNV NM_026779:c.T2518A:p.L840I exonic Mocos nonsynonymous SNV uc008egz.1:c.T2302A:p.L768I exonic ENSMUSG00000039616 nonsynonymous SNV ENSMUST00000068006:c.T2518A:p.L840I 18qA2 NA NA chr18 24859926 GATxTAT T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 255 1 0 9.079547 0.052632 0.02 2.194943 108 6 3102 164 60 60 0 0 TT 21.655911 72 0 1992 0 KEEP + Mocos NO AID_2 chr18 35021084 35021084 G A UTR5 Egr1 NA NA UTR5 Egr1 NA NA UTR5 ENSMUSG00000038418 NA NA 18qB1 NA NA chr18 35021084 GTAxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 110 0 0 33.026345 0.269231 0.02 1.239164 38 14 1134 395 60 60 0 0 GG 12.930273 43 0 1198 0 KEEP + Egr1 YES AID_2 chr18 35021107 35021107 C A UTR5 Egr1 NA NA UTR5 Egr1 NA NA UTR5 ENSMUSG00000038418 NA NA 18qB1 NA NA chr18 35021107 CCAxCAC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 141 0 0 8.939245 0.073529 0.02 1.098955 63 5 1768 143 60 60 0 0 CC 15.331948 51 0 1366 0 KEEP + Egr1 NO AID_2 chr18 36674830 36674830 G C exonic Hbegf nonsynonymous SNV NM_010415:c.C131G:p.T44S exonic Hbegf nonsynonymous SNV uc008enl.2:c.C131G:p.T44S exonic ENSMUSG00000024486 nonsynonymous SNV ENSMUST00000025363:c.C131G:p.T44S 18qB2 NA NA chr18 36674830 CCAxTGG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 78 2 0 8.009032 0.108108 0.02 -0.333241 33 4 937 116 60 60 0 0 GG 8.722006 29 0 796 0 KEEP - Hbegf NO AID_2 chr18 36823935 36823935 C G exonic Eif4ebp3 nonsynonymous SNV NM_201256:c.C82G:p.L28V exonic Eif4ebp3 nonsynonymous SNV uc008enx.2:c.C82G:p.L28V exonic ENSMUSG00000090264 nonsynonymous SNV ENSMUST00000036765:c.C82G:p.L28V 18qB2 NA NA chr18 36823935 ACAxTAT C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877647 0.877708 0.999931 81 0 0 20.934747 0.225 0.02 -0.35079 31 9 896 259 60 60 0 0 CC 7.512551 25 0 680 0 KEEP + Eif4ebp3 NO AID_2 chr18 70403975 70403975 C T intronic Dynap NA NA intronic 2310002L13Rik NA NA intronic ENSMUSG00000024512 NA NA 18qE2 NA NA chr18 70403975 GTAxCCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 137 0 0 33.468652 0.333333 0.02 1.090126 28 14 802 384 60 60 0 0 CC 14.136708 47 0 1312 0 KEEP - Dynap YES AID_2 chr18 75529148 75529148 G A exonic Smad7 nonsynonymous SNV NM_001042660:c.G539A:p.C180Y exonic Smad7 nonsynonymous SNV uc008fqd.1:c.G539A:p.C180Y exonic ENSMUSG00000025880 nonsynonymous SNV ENSMUST00000026999:c.G539A:p.C180Y 18qE3 NA NA chr18 75529148 GCTxTGA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 160 0 0 8.25145 0.080645 0.02 1.018716 57 5 1670 134 60 60 0 0 GG 18.941341 63 0 1770 0 KEEP + Smad7 YES AID_2 chr18 75529150 75529150 G A exonic Smad7 nonsynonymous SNV NM_001042660:c.G541A:p.E181K exonic Smad7 nonsynonymous SNV uc008fqd.1:c.G541A:p.E181K exonic ENSMUSG00000025880 nonsynonymous SNV ENSMUST00000026999:c.G541A:p.E181K 18qE3 NA NA chr18 75529150 TGTxAAT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 167 0 0 12.508836 0.107692 0.02 1.098836 58 7 1746 188 60 60 0 0 GG 19.553746 65 0 1868 0 KEEP + Smad7 YES AID_2 chr18 75529177 75529177 C T exonic Smad7 synonymous SNV NM_001042660:c.C568T:p.L190L exonic Smad7 synonymous SNV uc008fqd.1:c.C568T:p.L190L exonic ENSMUSG00000025880 synonymous SNV ENSMUST00000026999:c.C568T:p.L190L 18qE3 NA NA chr18 75529177 GAGxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 201 1 0 31.093986 0.189873 0.02 0.993724 64 15 1870 406 60 60 0 0 CC 22.857743 76 0 2110 0 KEEP + Smad7 YES AID_2 chr19 36191245 36191245 C T intronic Ankrd1 NA NA intronic Ankrd1 NA NA intronic ENSMUSG00000024803 NA NA 19qC2 NA NA chr19 36191245 AAGxAAG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 107 0 0 11.62728 0.15 0.02 -0.359358 34 6 952 161 60 60 0 0 CC 15.017588 50 0 1357 0 KEEP - Ankrd1 YES AID_2 chr19 38199042 38199042 G A exonic Rbp4 synonymous SNV NM_001159487:c.C210T:p.S70S exonic Rbp4 synonymous SNV uc008hjd.2:c.C78T:p.S26S exonic ENSMUSG00000024990 synonymous SNV ENSMUST00000025951:c.C210T:p.S70S 19qC3 NA NA chr19 38199042 GAAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 183 0 0 8.038347 0.064103 0.02 0.985543 73 5 2055 137 60 60 0 0 GG 20.754347 69 0 1925 0 KEEP - Rbp4 YES AID_2 chr19 4986223 4986223 G C exonic Npas4 nonsynonymous SNV NM_153553:c.C1912G:p.Q638E exonic Npas4 nonsynonymous SNV uc012bgr.1:c.C1069G:p.Q357E exonic ENSMUSG00000045903 nonsynonymous SNV ENSMUST00000056129:c.C1912G:p.Q638E 19qA NA NA chr19 4986223 TCTxCTG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 88 0 0 7.175871 0.1 0.02 -0.35068 36 4 1032 109 60 60 0 0 GG 13.22464 44 0 1201 0 KEEP - Npas4 NO AID_2 chr19 50752642 50752642 C T exonic Sorcs1 nonsynonymous SNV NM_001252501:c.G317A:p.G106D exonic Sorcs1 nonsynonymous SNV uc008hwa.2:c.G317A:p.G106D exonic ENSMUSG00000043531 nonsynonymous SNV ENSMUST00000076049:c.G317A:p.G106D 19qD1 NA NA chr19 50752642 CGGxCAG C T 2-AID-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.489993 0.490544 0.998875 63 2 0 41.484154 0.652174 0.02 -0.201579 8 15 229 408 60 60 0 0 CC 8.420862 28 0 772 0 KEEP - Sorcs1 YES AID_2 chr19 53604176 53604176 C T exonic Dusp5 synonymous SNV NM_001085390:c.C369T:p.Y123Y exonic Dusp5 synonymous SNV uc008hwx.1:c.C369T:p.Y123Y exonic ENSMUSG00000034765 synonymous SNV ENSMUST00000038287:c.C369T:p.Y123Y 19qD2 NA NA chr19 53604176 CTAxTTC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.023962 0.024074 0.995343 22 0 0 8.552479 0.75 0.02 -0.043843 1 3 31 81 60 60 0 0 CC 4.210568 14 0 386 0 KEEP + Dusp5 YES AID_2 chr19 59534006 59534006 C T exonic Emx2 nonsynonymous SNV NM_010132:c.C301T:p.P101S exonic Emx2 nonsynonymous SNV uc008ibl.1:c.C301T:p.P101S exonic ENSMUSG00000043969 nonsynonymous SNV ENSMUST00000062216:c.C301T:p.P101S 19qD3 NA NA chr19 59534006 CTGxCCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 197 3 0 75.573606 0.378049 0.02 1.057019 51 31 1442 844 60 60 0 0 CC 23.416867 78 0 2057 0 KEEP + Emx2 YES AID_2 chr1 107888309 107888309 C T intronic Zcchc2 NA NA intronic Zcchc2 NA NA intronic ENSMUSG00000038866 NA NA 1qE2.1 NA NA chr1 107888309 TCGxAGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139813 0.139832 0.999863 34 0 0 14.946684 0.5 0.02 -0.105218 6 6 176 157 60 60 0 0 CC 6.016255 20 0 567 0 KEEP + Zcchc2 YES AID_2 chr1 107888312 107888312 C T intronic Zcchc2 NA NA intronic Zcchc2 NA NA intronic ENSMUSG00000038866 NA NA 1qE2.1 NA NA chr1 107888312 CAGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.999859 32 0 0 15.94874 0.5 0.02 -0.105232 6 6 172 167 60 60 0 0 CC 5.412333 18 0 487 0 KEEP + Zcchc2 YES AID_2 chr1 151947372 151947372 C T exonic Ptgs2 synonymous SNV NM_011198:c.C19T:p.L7L exonic Ptgs2 synonymous SNV uc007cxv.1:c.C19T:p.L7L exonic ENSMUSG00000032487 synonymous SNV ENSMUST00000035065:c.C19T:p.L7L 1qG1 NA NA chr1 151947372 GTGxTGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229152 0.229173 0.999909 49 0 0 6.872587 0.2 0.02 -0.131556 12 3 353 87 60 60 0 0 CC 7.219513 24 0 680 0 KEEP + Ptgs2 YES AID_2 chr1 154472172 154472172 C T UTR5 Rgl1 NA NA UTR5 Rgl1 NA NA UTR5 ENSMUSG00000026482 NA NA 1qG3 NA NA chr1 154472172 CTGxATG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522098 0.522161 0.999879 55 0 0 15.948022 0.291667 0.02 -0.210479 17 7 509 189 60 60 0 0 CC 6.618267 22 0 632 0 KEEP - Rgl1 YES AID_2 chr1 154987043 154987043 T G intronic Lamc2 NA NA intronic Lamc2 NA NA intronic ENSMUSG00000026479 NA NA 1qG3 NA NA chr1 154987043 AACxTGA T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 56 0 0 16.914273 0.388889 0.02 -0.15784 11 7 315 188 60 60 0 0 TT 9.301808 31 0 824 0 KEEP - Lamc2 NO AID_2 chr1 155672443 155672443 T C exonic Rgsl1 nonsynonymous SNV NM_001243223:c.A1394G:p.N465S intergenic "Rgsl1(dist=3801),5830403L16Rik(dist=24229)" NA NA ncRNA_exonic ENSMUSG00000042641 NA NA 1qG3 NA NA chr1 155672443 GGGxTCA T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 49 0 0 12.513907 0.294118 0.02 -0.149069 12 5 331 146 60 60 0 0 TT 6.911386 23 0 612 0 KEEP NA Rgsl1 NO AID_2 chr1 156945729 156945729 C T exonic Ier5 nonsynonymous SNV NM_010500:c.G832A:p.G278S exonic Ier5 nonsynonymous SNV uc007dax.2:c.G832A:p.G278S exonic ENSMUSG00000056708 nonsynonymous SNV ENSMUST00000055322:c.G832A:p.G278S 1qG3 NA NA chr1 156945729 CGCxCTC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 176 0 0 11.918482 0.107692 0.02 1.028405 58 7 1597 182 60 60 0 0 CC 24.925607 83 0 2137 0 KEEP - Ier5 YES AID_2 chr1 156945733 156945733 C T exonic Ier5 synonymous SNV NM_010500:c.G828A:p.E276E exonic Ier5 synonymous SNV uc007dax.2:c.G828A:p.E276E exonic ENSMUSG00000056708 synonymous SNV ENSMUST00000055322:c.G828A:p.E276E 1qG3 NA NA chr1 156945733 CTCxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 181 2 0 12.376606 0.121212 0.02 1.116633 58 8 1652 191 60 60 0 0 CC 24.446801 84 1 2291 7 KEEP - Ier5 YES AID_2 chr1 156945805 156945805 G A exonic Ier5 synonymous SNV NM_010500:c.C756T:p.S252S exonic Ier5 synonymous SNV uc007dax.2:c.C756T:p.S252S exonic ENSMUSG00000056708 synonymous SNV ENSMUST00000055322:c.C756T:p.S252S 1qG3 NA NA chr1 156945805 GATxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 248 2 0 7.784454 0.0625 0.02 0.89674 75 5 2185 135 60 60 0 0 GG 36.650639 122 0 3392 0 KEEP - Ier5 YES AID_2 chr1 156945923 156945923 G A exonic Ier5 nonsynonymous SNV NM_010500:c.C638T:p.S213L exonic Ier5 nonsynonymous SNV uc007dax.2:c.C638T:p.S213L exonic ENSMUSG00000056708 nonsynonymous SNV ENSMUST00000055322:c.C638T:p.S213L 1qG3 NA NA chr1 156945923 GCCxAGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 62 0 0 9.381261 0.235294 0.02 -0.175401 13 4 380 115 60 60 0 0 GG 12.569591 42 0 1148 0 KEEP - Ier5 YES AID_2 chr1 156945925 156945925 G A exonic Ier5 synonymous SNV NM_010500:c.C636T:p.C212C exonic Ier5 synonymous SNV uc007dax.2:c.C636T:p.C212C exonic ENSMUSG00000056708 synonymous SNV ENSMUST00000055322:c.C636T:p.C212C 1qG3 NA NA chr1 156945925 CGAxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 63 0 0 8.671716 0.222222 0.02 -0.183959 14 4 382 109 60 60 0 0 GG 12.542357 42 0 1096 0 KEEP - Ier5 YES AID_2 chr1 156945928 156945928 G A exonic Ier5 synonymous SNV NM_010500:c.C633T:p.S211S exonic Ier5 synonymous SNV uc007dax.2:c.C633T:p.S211S exonic ENSMUSG00000056708 synonymous SNV ENSMUST00000055322:c.C633T:p.S211S 1qG3 NA NA chr1 156945928 GCAxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 62 0 0 43.268713 0.882353 0.02 -0.16656 2 15 57 388 60 60 0 0 GG 12.319679 41 0 1089 0 KEEP - Ier5 YES AID_2 chr1 156946501 156946501 G T exonic Ier5 nonsynonymous SNV NM_010500:c.C60A:p.N20K exonic Ier5 nonsynonymous SNV uc007dax.2:c.C60A:p.N20K exonic ENSMUSG00000056708 nonsynonymous SNV ENSMUST00000055322:c.C60A:p.N20K 1qG3 NA NA chr1 156946501 CGAxTTG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 292 0 0 17.956126 0.095238 0.02 2.462186 95 10 2747 275 60 60 0 0 GG 39.668363 132 0 3618 0 KEEP - Ier5 NO AID_2 chr1 16093289 16093289 G A exonic Rpl7 nonsynonymous SNV NM_011291:c.C316T:p.P106S exonic Rpl7 nonsynonymous SNV uc007ajl.2:c.C316T:p.P106S exonic ENSMUSG00000043716 nonsynonymous SNV ENSMUST00000058437:c.C316T:p.P106S 1qA3 NA NA chr1 16093289 CGGxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 236 4 0 8.166701 0.056818 0.02 0.915106 83 5 2405 141 60 60 0 0 GG 26.182332 97 1 2671 28 KEEP - Rpl7 YES AID_2 chr1 16093723 16093723 C T exonic Rpl7 synonymous SNV NM_011291:c.G57A:p.K19K exonic Rpl7 synonymous SNV uc007ajl.2:c.G57A:p.K19K exonic ENSMUSG00000043716 synonymous SNV ENSMUST00000058437:c.G57A:p.K19K 1qA3 NA NA chr1 16093723 TTTxTTA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 77 0 1 33.508247 0.521739 0.02 -0.210477 11 12 331 347 60 60 0 0 CC 10.228454 34 0 979 0 KEEP - Rpl7 YES AID_2 chr1 162005359 162005359 G T exonic 4930523C07Rik nonsynonymous SNV NM_001162896:c.G67T:p.V23F exonic "4930523C07Rik,4930562F07Rik" nonsynonymous SNV uc007dec.2:c.G67T:p.V23F exonic "ENSMUSG00000026729,ENSMUSG00000090394" nonsynonymous SNV ENSMUST00000028061:c.C290A:p.T97K 1qH2.1 NA NA chr1 162005359 GGCxTCT G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 134 0 0 12.624843 0.15 0.02 -0.350697 34 6 917 171 60 60 0 0 GG 20.727766 69 0 1740 0 KEEP - 4930523C07Rik NO AID_2 chr1 165242569 165242569 C T exonic Prrx1 synonymous SNV NM_001025570:c.G198A:p.E66E exonic Prrx1 synonymous SNV uc007dhh.1:c.G198A:p.E66E exonic ENSMUSG00000026586 synonymous SNV ENSMUST00000027878:c.G198A:p.E66E 1qH2.1 NA NA chr1 165242569 TGAxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 55 2 0 17.308695 0.368421 0.02 -0.175351 12 7 338 194 60 60 0 0 CC 8.419864 28 0 756 0 KEEP - Prrx1 YES AID_2 chr1 165242755 165242755 G A exonic Prrx1 synonymous SNV NM_001025570:c.C12T:p.S4S exonic Prrx1 synonymous SNV uc007dhh.1:c.C12T:p.S4S exonic ENSMUSG00000026586 synonymous SNV ENSMUST00000027878:c.C12T:p.S4S 1qH2.1 NA NA chr1 165242755 GTAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 134 2 0 53.342035 0.456522 0.02 -0.420782 25 21 710 571 60 60 0 0 GG 14.26882 55 1 1530 21 KEEP - Prrx1 YES AID_2 chr1 174426364 174426364 C G exonic Igsf9 nonsynonymous SNV NM_001145800:c.C2232G:p.C744W exonic Igsf9 nonsynonymous SNV uc007dqn.2:c.C2232G:p.C744W exonic ENSMUSG00000037995 nonsynonymous SNV ENSMUST00000052629:c.C2232G:p.C744W 1qH3 NA NA chr1 174426364 CTGxTTC C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 367 0 0 11.839162 0.052288 0.02 4.039874 145 8 4196 216 60 60 0 0 CC 41.499663 138 0 3884 0 KEEP + Igsf9 NO AID_2 chr1 180034226 180034226 C T intergenic "Gm16432(dist=55804),Desi2(dist=83322)" NA NA ncRNA_exonic EG545391 NA NA exonic ENSMUSG00000066667 nonsynonymous SNV ENSMUST00000111149:c.C1048T:p.L350F 1qH4 "Score=0.946144;Name=No.519,chr1:179767643" NA chr1 180034226 GTCxTTA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 45 2 0 9.163423 0.2 0.02 -0.175411 16 4 473 116 60 37 0 0 CC 5.109775 17 0 477 0 KEEP + Gm16432 YES AID_2 chr1 180267646 180267646 C T exonic Hnrnpu synonymous SNV NM_016805:c.G57A:p.E19E exonic Hnrnpu synonymous SNV uc011wxl.1:c.G57A:p.E19E exonic ENSMUSG00000039630 synonymous SNV ENSMUST00000037748:c.G57A:p.E19E 1qH4 NA NA chr1 180267646 GAGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 185 0 0 8.31561 0.079365 0.02 1.142824 58 5 1661 135 60 60 0 0 CC 24.963852 83 0 2298 0 KEEP - Hnrnpu YES AID_2 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 56 0 0 40.077017 0.666667 0.02 -0.184067 7 14 195 392 60 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO AID_2 chr1 26744177 26744177 A G exonic 4931408C20Rik nonsynonymous SNV NM_001033764:c.T95C:p.M32T exonic 4931408C20Rik nonsynonymous SNV uc007amz.2:c.T95C:p.M32T exonic ENSMUSG00000073722 nonsynonymous SNV ENSMUST00000097801:c.T95C:p.M32T 1qA5 NA NA chr1 26744177 CACxTAA A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 334 7 0 16.937727 0.081481 0.02 2.002224 124 11 3419 282 60 60 0 0 AA 44.209341 147 0 3981 0 KEEP - 4931408C20Rik NO AID_2 chr1 40499612 40499612 C T intronic Il1rl1 NA NA intronic Il1rl1 NA NA intronic ENSMUSG00000026069 NA NA 1qB NA NA chr1 40499612 AAGxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.999859 52 2 0 20.655469 0.380952 0.02 -0.184175 13 8 383 229 60 60 0 0 CC 5.413714 18 0 503 0 KEEP + Il1rl1 YES AID_2 chr1 50984827 50984827 C T exonic Tmeff2 synonymous SNV NM_019790:c.C36T:p.S12S exonic Tmeff2 synonymous SNV uc007axj.1:c.C36T:p.S12S exonic ENSMUSG00000026109 synonymous SNV ENSMUST00000081851:c.C36T:p.S12S 1qC1.1 NA NA chr1 50984827 CAGxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 253 0 0 71.817642 0.322581 0.02 0.969346 63 30 1819 829 60 60 0 0 CC 34.592119 115 0 3242 0 KEEP + Tmeff2 YES AID_2 chr1 59539922 59539922 G T exonic Fzd7 nonsynonymous SNV NM_008057:c.G119T:p.G40V exonic Fzd7 nonsynonymous SNV uc011wlq.1:c.G119T:p.G40V exonic ENSMUSG00000041075 nonsynonymous SNV ENSMUST00000114246:c.G119T:p.G40V 1qC1.3 NA NA chr1 59539922 AAGxCAT G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 94 0 0 17.130562 0.216216 0.02 -0.324488 29 8 852 217 60 60 0 0 GG 11.714784 39 0 1064 0 KEEP + Fzd7 NO AID_2 chr1 59540013 59540013 G A exonic Fzd7 synonymous SNV NM_008057:c.G210A:p.L70L exonic Fzd7 synonymous SNV uc011wlq.1:c.G210A:p.L70L exonic ENSMUSG00000041075 synonymous SNV ENSMUST00000114246:c.G210A:p.L70L 1qC1.3 NA NA chr1 59540013 CCTxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 137 0 0 32.282845 0.245902 0.02 1.053759 46 15 1355 399 60 60 0 0 GG 15.641399 52 0 1470 0 KEEP + Fzd7 YES AID_2 chr1 59540583 59540583 G A exonic Fzd7 synonymous SNV NM_008057:c.G780A:p.V260V exonic Fzd7 synonymous SNV uc011wlq.1:c.G780A:p.V260V exonic ENSMUSG00000041075 synonymous SNV ENSMUST00000114246:c.G780A:p.V260V 1qC1.3 NA NA chr1 59540583 AGTxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 162 0 0 19.762118 0.236842 0.02 1.037251 29 9 858 245 60 60 0 0 GG 24.317689 81 0 2235 0 KEEP + Fzd7 YES AID_2 chr1 59540586 59540586 G A exonic Fzd7 synonymous SNV NM_008057:c.G783A:p.L261L exonic Fzd7 synonymous SNV uc011wlq.1:c.G783A:p.L261L exonic ENSMUSG00000041075 synonymous SNV ENSMUST00000114246:c.G783A:p.L261L 1qC1.3 NA NA chr1 59540586 GCTxTGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 160 0 0 49.219521 0.5 0.02 1.063021 19 19 558 516 60 60 0 0 GG 24.060065 80 0 2217 0 KEEP + Fzd7 YES AID_2 chr1 59540588 59540588 G A exonic Fzd7 nonsynonymous SNV NM_008057:c.G785A:p.C262Y exonic Fzd7 nonsynonymous SNV uc011wlq.1:c.G785A:p.C262Y exonic ENSMUSG00000041075 nonsynonymous SNV ENSMUST00000114246:c.G785A:p.C262Y 1qC1.3 NA NA chr1 59540588 TGTxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 159 0 0 48.483638 0.513514 0.02 1.083148 18 19 506 505 60 60 0 0 GG 24.05754 80 0 2251 0 KEEP + Fzd7 YES AID_2 chr1 59541264 59541264 C T exonic Fzd7 synonymous SNV NM_008057:c.C1461T:p.Y487Y exonic Fzd7 synonymous SNV uc011wlq.1:c.C1461T:p.Y487Y exonic ENSMUSG00000041075 synonymous SNV ENSMUST00000114246:c.C1461T:p.Y487Y 1qC1.3 NA NA chr1 59541264 CTAxTTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 142 0 0 11.068499 0.095238 0.02 1.134108 57 6 1651 168 60 60 0 0 CC 17.13639 57 0 1569 0 KEEP + Fzd7 YES AID_2 chr1 59541423 59541423 C T exonic Fzd7 synonymous SNV NM_008057:c.C1620T:p.I540I exonic Fzd7 synonymous SNV uc011wlq.1:c.C1620T:p.I540I exonic ENSMUSG00000041075 synonymous SNV ENSMUST00000114246:c.C1620T:p.I540I 1qC1.3 NA NA chr1 59541423 CATxACT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 173 4 0 30.490966 0.220588 0.02 1.099419 53 15 1583 389 60 60 0 0 CC 22.863819 76 0 2194 0 KEEP + Fzd7 YES AID_2 chr1 89661877 89661877 C T intronic Atg16l1 NA NA intronic "APG16L,Atg16l1" NA NA intronic ENSMUSG00000026289 NA NA 1qD NA NA chr1 89661877 GTCxTTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139814 0.139832 0.999869 35 0 0 27.76121 0.75 0.02 -0.105243 3 9 86 264 60 60 0 0 CC 6.316399 21 0 586 0 KEEP + Atg16l1 YES AID_2 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 567 2 0 81.521504 0.124601 0.02 8.487025 274 39 7319 1139 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO AID_2 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 563 0 0 115.047581 0.170492 0.02 8.08624 253 52 7414 1507 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 YES AID_2 chr1 90112715 90112715 C A exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1087A:p.H363N exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1078A:p.H360N exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1081A:p.H361N 1qD NA NA chr1 90112715 GGTxATC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 48 0 0 10.169923 0.185185 0.02 -0.236792 22 5 652 134 60 60 0 0 CC 5.106648 17 0 470 0 KEEP + Ugt1a1 NO AID_2 chr1 90112835 90112835 C T exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1207T:p.R403C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1198T:p.R400C exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1201T:p.R401C 1qD NA NA chr1 90112835 AAGxGCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 165 0 0 36.911996 0.232877 0.02 0.957349 56 17 1553 460 60 60 0 0 CC 18.044386 60 0 1644 0 KEEP + Ugt1a1 YES AID_2 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 188 0 0 31.813614 0.185185 0.02 0.985204 66 15 1742 415 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 NO AID_2 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 211 0 0 49.810532 0.220183 0.02 2.328119 85 24 2515 633 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO AID_2 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 418 5 1 74.53641 0.192982 0.02 5.73912 138 33 3786 952 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO AID_2 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 476 2 0 73.276895 0.15678 0.02 4.24988 199 37 5832 1001 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a YES AID_2 chr1 90142592 90142592 C T exonic Mroh2a synonymous SNV NM_001281466:c.C2586T:p.H862H exonic Heatr7b1 synonymous SNV uc011wov.1:c.C2595T:p.H865H exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.C2586T:p.H862H 1qD NA NA chr1 90142592 CCAxTTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 484 8 0 34.171645 0.090047 0.02 4.808219 192 19 5580 528 60 60 0 0 CC 47.181285 157 0 4345 0 KEEP + Mroh2a YES AID_2 chr1 90145105 90145105 G A intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90145105 TCTxTGT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 170 0 0 23.450301 0.15 0.02 0.808054 68 12 2012 324 60 60 0 0 GG 15.641541 52 0 1481 0 KEEP + Mroh2a YES AID_2 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 252 0 0 53.48685 0.198347 0.02 2.420751 97 24 2857 682 70 70 0 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a YES AID_2 chr1 90147949 90147949 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3319T:p.R1107W exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3328T:p.R1110W exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3319T:p.R1107W 1qD NA NA chr1 90147949 ATGxGGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 224 0 0 36.966183 0.176471 0.02 2.23228 84 18 2043 490 70 70 0 0 CC 28.221001 94 0 2168 0 KEEP + Mroh2a YES AID_2 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 258 0 0 63.474024 0.194444 0.02 2.316154 116 28 3133 809 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO AID_2 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967423 0.967425 0.999998 107 0 0 54.905204 0.423077 0.02 1.141336 30 22 882 598 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a YES AID_2 chr1 90155318 90155318 T A intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90155318 GGTxGGG T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 247 0 0 24.864504 0.183099 0.02 2.369964 58 13 1618 333 60 60 0 0 TT 24.650705 82 0 2193 0 KEEP + Mroh2a NO AID_2 chr1 90155329 90155329 C G intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90155329 TGAxCCT C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 195 0 0 29.799965 0.220339 0.02 2.768145 46 13 1329 371 60 60 0 0 CC 19.853035 66 0 1857 0 KEEP + Mroh2a NO AID_2 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 222 2 0 57.460162 0.204724 0.02 2.276843 101 26 2774 730 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO AID_2 chr1 90161760 90161760 G A exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.C1772T:p.P591L exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc011wow.1:c.C1376T:p.P459L exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000100097:c.C473T:p.P158L 1qD NA NA chr1 90161760 CAGxGCC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 130 0 0 21.187019 0.151515 0.02 1.214696 56 10 1646 286 60 60 0 0 GG 11.731581 39 0 1104 0 KEEP - A730008H23Rik YES AID_2 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 507 10 0 67.69982 0.142857 0.02 4.961017 192 32 5143 923 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP - A730008H23Rik NO AID_2 chr1 90597650 90597650 G A UTR3 Arl4c NA NA UTR3 Arl4c NA NA UTR3 ENSMUSG00000049866 NA NA 1qD NA NA chr1 90597650 GCTxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 50 0 0 8.83103 0.266667 0.02 -0.131547 11 4 325 107 60 60 0 0 GG 7.520467 25 0 710 0 KEEP - Arl4c YES AID_2 chr1 90597755 90597755 G A exonic Arl4c nonsynonymous SNV NM_177305:c.C485T:p.A162V exonic Arl4c nonsynonymous SNV uc007byt.1:c.C485T:p.A162V exonic ENSMUSG00000049866 nonsynonymous SNV ENSMUST00000051236:c.C485T:p.A162V 1qD NA NA chr1 90597755 ATGxCGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999998 74 2 0 26.090293 0.297297 0.02 -0.323474 26 11 727 306 60 60 0 0 GG 9.924374 33 0 910 0 KEEP - Arl4c YES AID_2 chr1 90597919 90597919 C T exonic Arl4c synonymous SNV NM_177305:c.G321A:p.E107E exonic Arl4c synonymous SNV uc007byt.1:c.G321A:p.E107E exonic ENSMUSG00000049866 synonymous SNV ENSMUST00000051236:c.G321A:p.E107E 1qD NA NA chr1 90597919 CAGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 315 5 0 9.22955 0.053571 0.02 2.197297 106 6 3034 165 60 60 0 0 CC 39.282277 131 0 3543 0 KEEP - Arl4c YES AID_2 chr1 90598017 90598017 G C exonic Arl4c nonsynonymous SNV NM_177305:c.C223G:p.L75V exonic Arl4c nonsynonymous SNV uc007byt.1:c.C223G:p.L75V exonic ENSMUSG00000049866 nonsynonymous SNV ENSMUST00000051236:c.C223G:p.L75V 1qD NA NA chr1 90598017 GTAxCTT G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 189 0 0 11.104578 0.083333 0.02 1.145957 66 6 1893 172 60 60 0 0 GG 26.447886 88 0 2425 0 KEEP - Arl4c NO AID_2 chr1 90598018 90598018 C T exonic Arl4c synonymous SNV NM_177305:c.G222A:p.K74K exonic Arl4c synonymous SNV uc007byt.1:c.G222A:p.K74K exonic ENSMUSG00000049866 synonymous SNV ENSMUST00000051236:c.G222A:p.K74K 1qD NA NA chr1 90598018 TAGxTTC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 189 0 0 12.8401 0.09589 0.02 1.038617 66 7 1907 195 60 60 0 0 CC 26.445455 88 0 2441 0 KEEP - Arl4c YES AID_2 chr1 90598072 90598072 G A exonic Arl4c synonymous SNV NM_177305:c.C168T:p.N56N exonic Arl4c synonymous SNV uc007byt.1:c.C168T:p.N56N exonic ENSMUSG00000049866 synonymous SNV ENSMUST00000051236:c.C168T:p.N56N 1qD NA NA chr1 90598072 GCCxTTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 180 0 0 58.212961 0.378788 0.02 1.019641 41 25 1008 653 60 60 0 0 GG 28.526971 95 0 2325 0 KEEP - Arl4c YES AID_2 chr1 92690831 92690831 A C intronic Col6a3 NA NA intronic Col6a3 NA NA intronic ENSMUSG00000048126 NA NA 1qD NA NA chr1 92690831 ACAxGTT A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 119 0 0 32.329038 0.290909 0.02 1.212999 39 16 1132 391 60 60 0 0 AA 14.438243 48 0 1344 0 KEEP - Col6a3 NO AID_2 chr1 93698401 93698401 C T exonic Twist2 synonymous SNV NM_007855:c.C198T:p.S66S exonic Twist2 synonymous SNV uc007cbd.1:c.C198T:p.S66S exonic ENSMUSG00000007805 synonymous SNV ENSMUST00000007949:c.C198T:p.S66S 1qD NA NA chr1 93698401 GAGxCAG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 38 0 0 9.560522 0.277778 0.02 -0.157403 13 5 364 118 60 60 0 0 CC 5.412757 18 0 489 0 KEEP - Twist2 YES AID_2 chr1 93698528 93698528 C T exonic Twist2 synonymous SNV NM_007855:c.C325T:p.L109L exonic Twist2 synonymous SNV uc007cbd.1:c.C325T:p.L109L exonic ENSMUSG00000007805 synonymous SNV ENSMUST00000007949:c.C325T:p.L109L 1qD NA NA chr1 93698528 AAGxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 104 2 0 20.334602 0.225 0.02 -0.359574 31 9 911 253 60 60 0 0 CC 12.3322 41 0 1144 0 KEEP - Twist2 YES AID_2 chr1 9536938 9536938 G T UTR3 Rrs1 NA NA UTR3 Rrs1 NA NA UTR3 ENSMUSG00000061024 NA NA 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536938 CTTxACT G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 495 15 7 39.414663 0.095023 0.02 4.825078 200 21 5968 595 60 60 0 0 GG 41.529006 148 1 4229 28 KEEP + Rrs1 NO AID_2 chr2 102741509 102741509 G A UTR5 Cd44 NA NA UTR5 Cd44 NA NA UTR5 ENSMUSG00000005087 NA NA 2qE2 NA NA chr2 102741509 CGTxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 64 0 0 8.163556 0.210526 0.02 -0.166625 15 4 446 105 60 60 0 0 GG 9.906844 33 0 886 0 KEEP - Cd44 YES AID_2 chr2 111318951 111318951 A C exonic Olfr1288 nonsynonymous SNV NM_146400:c.A9C:p.Q3H exonic Olfr1288 nonsynonymous SNV uc008lno.1:c.A9C:p.Q3H exonic ENSMUSG00000044039 nonsynonymous SNV ENSMUST00000104889:c.A9C:p.Q3H 2qE3 NA NA chr2 111318951 CCAxGTT A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 140 0 0 70.575952 0.583333 0.02 -0.420802 20 28 578 714 60 60 0 0 AA 21.055299 70 0 1954 0 KEEP + Olfr1288 NO AID_2 chr2 117938352 117938352 C T UTR5 Thbs1 NA NA UTR5 Thbs1 NA NA UTR5 ENSMUSG00000040152 NA NA 2qE5 NA NA chr2 117938352 AGGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 166 0 0 35.231831 0.231884 0.02 1.091592 53 16 1484 438 60 60 0 0 CC 22.254965 74 0 2023 0 KEEP + Thbs1 YES AID_2 chr2 117938412 117938412 C T exonic Thbs1 synonymous SNV NM_011580:c.C34T:p.L12L exonic Thbs1 synonymous SNV uc008lrq.1:c.C34T:p.L12L exonic ENSMUSG00000040152 synonymous SNV ENSMUST00000039559:c.C34T:p.L12L 2qE5 NA NA chr2 117938412 TTCxTGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 230 0 0 13.265249 0.075269 0.02 0.977911 86 7 2528 207 60 60 0 0 CC 27.066345 90 0 2517 0 KEEP + Thbs1 YES AID_2 chr2 117938418 117938418 C T exonic Thbs1 nonsynonymous SNV NM_011580:c.C40T:p.H14Y exonic Thbs1 nonsynonymous SNV uc008lrq.1:c.C40T:p.H14Y exonic ENSMUSG00000040152 nonsynonymous SNV ENSMUST00000039559:c.C40T:p.H14Y 2qE5 NA NA chr2 117938418 TTGxATA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 225 0 0 51.462484 0.255556 0.02 0.808083 67 23 1972 627 60 60 0 0 CC 27.373543 91 0 2575 0 KEEP + Thbs1 YES AID_2 chr2 117939075 117939075 C T exonic Thbs1 nonsynonymous SNV NM_011580:c.C437T:p.A146V exonic Thbs1 nonsynonymous SNV uc008lrq.1:c.C437T:p.A146V exonic ENSMUSG00000040152 nonsynonymous SNV ENSMUST00000039559:c.C437T:p.A146V 2qE5 NA NA chr2 117939075 AAGxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 98 0 0 24.671258 0.314286 0.02 -0.306523 24 11 699 289 60 60 0 0 CC 13.809285 46 0 1240 0 KEEP + Thbs1 YES AID_2 chr2 117940143 117940143 G A exonic Thbs1 nonsynonymous SNV NM_011580:c.G701A:p.S234N exonic Thbs1 nonsynonymous SNV uc008lrq.1:c.G701A:p.S234N exonic ENSMUSG00000040152 nonsynonymous SNV ENSMUST00000039559:c.G701A:p.S234N 2qE5 NA NA chr2 117940143 CCAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 114 0 0 58.488554 0.617647 0.02 -0.298158 13 21 378 583 60 60 0 0 GG 17.746326 59 0 1644 0 KEEP + Thbs1 YES AID_2 chr2 117941642 117941642 G A exonic Thbs1 nonsynonymous SNV NM_011580:c.G1106A:p.C369Y exonic Thbs1 nonsynonymous SNV uc008lrq.1:c.G1106A:p.C369Y exonic ENSMUSG00000040152 nonsynonymous SNV ENSMUST00000039559:c.G1106A:p.C369Y 2qE5 NA NA chr2 117941642 AATxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 128 0 0 42.618258 0.346154 0.02 1.141332 34 18 1002 486 60 60 0 0 GG 15.919554 53 0 1443 0 KEEP + Thbs1 YES AID_2 chr2 119596963 119596963 C G exonic Rpap1 nonsynonymous SNV NM_001163701:c.G2251C:p.A751P exonic Rpap1 nonsynonymous SNV uc008lul.2:c.G2251C:p.A751P exonic ENSMUSG00000034032 nonsynonymous SNV ENSMUST00000048493:c.G2251C:p.A751P 2qE5 NA NA chr2 119596963 CTGxCAG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 81 2 0 7.36855 0.117647 0.02 -0.298167 30 4 873 108 60 60 0 0 CC 10.524134 35 0 943 0 KEEP - Rpap1 NO AID_2 chr2 131038872 131038872 G A UTR3 Ap5s1 NA NA UTR3 2310035K24Rik NA NA UTR3 ENSMUSG00000068264 NA NA 2qF1 NA NA chr2 131038872 CGCxAGT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 154 0 0 51.807418 0.333333 0.02 1.14289 42 21 1132 592 60 60 0 0 GG 19.780178 66 0 1622 0 KEEP + Ap5s1 YES AID_2 chr2 13350294 13350294 T G exonic Cubn nonsynonymous SNV NM_001081084:c.A3431C:p.K1144T exonic Cubn nonsynonymous SNV uc008ijz.1:c.A3431C:p.K1144T exonic ENSMUSG00000026726 nonsynonymous SNV ENSMUST00000091436:c.A3431C:p.K1144T 2qA1 NA NA chr2 13350294 CTCxTAA T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 117 0 0 30.883224 0.351351 0.02 -0.324439 24 13 688 351 60 60 0 0 TT 17.144885 57 0 1595 0 KEEP - Cubn NO AID_2 chr2 13480525 13480525 C A intergenic "Trdmt1(dist=14234),Vim(dist=15413)" NA NA intergenic "Trdmt1(dist=14234),Vim(dist=15413)" NA NA UTR3 ENSMUSG00000052389 NA NA 2qA1 NA NA chr2 13480525 GAAxAAA C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 101 1 0 21.697303 0.272727 0.02 -0.289421 24 9 708 258 60 60 0 0 CC 14.724427 49 0 1375 0 KEEP NA Trdmt1 NO AID_2 chr2 13496067 13496067 C T exonic Vim synonymous SNV NM_011701:c.C9T:p.T3T exonic Vim synonymous SNV uc008ikb.2:c.C9T:p.T3T exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.C9T:p.T3T 2qA1 NA NA chr2 13496067 TACxAGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 129 0 0 19.117092 0.204545 0.02 -0.385864 35 9 1033 245 60 60 0 0 CC 18.339229 61 0 1704 0 KEEP + Vim YES AID_2 chr2 13496097 13496097 G T exonic Vim nonsynonymous SNV NM_011701:c.G39T:p.R13S exonic Vim nonsynonymous SNV uc008ikb.2:c.G39T:p.R13S exonic ENSMUSG00000026728 nonsynonymous SNV ENSMUST00000028062:c.G39T:p.R13S 2qA1 NA NA chr2 13496097 CAGxATG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 142 0 0 6.656954 0.088889 0.02 -0.403345 41 4 1174 106 60 60 0 0 GG 19.545549 65 0 1798 0 KEEP + Vim NO AID_2 chr2 13496144 13496144 G T exonic Vim nonsynonymous SNV NM_011701:c.G86T:p.S29I exonic Vim nonsynonymous SNV uc008ikb.2:c.G86T:p.S29I exonic ENSMUSG00000026728 nonsynonymous SNV ENSMUST00000028062:c.G86T:p.S29I 2qA1 NA NA chr2 13496144 GGAxCTA G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 101 0 0 16.156388 0.225806 0.02 -0.288979 24 7 670 200 60 60 0 2 GG 15.32254 51 0 1386 0 KEEP + Vim NO AID_2 chr2 13496199 13496199 C T exonic Vim synonymous SNV NM_011701:c.C141T:p.S47S exonic Vim synonymous SNV uc008ikb.2:c.C141T:p.S47S exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.C141T:p.S47S 2qA1 NA NA chr2 13496199 CAGxACT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 66 0 0 9.966815 0.227273 0.02 -0.201675 17 5 502 127 60 60 0 0 CC 11.129344 37 0 1038 0 KEEP + Vim YES AID_2 chr2 13496207 13496207 G A exonic Vim nonsynonymous SNV NM_011701:c.G149A:p.R50H exonic Vim nonsynonymous SNV uc008ikb.2:c.G149A:p.R50H exonic ENSMUSG00000026728 nonsynonymous SNV ENSMUST00000028062:c.G149A:p.R50H 2qA1 NA NA chr2 13496207 GCCxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999998 59 0 0 11.431106 0.263158 0.02 -0.175365 14 5 390 138 60 60 0 0 GG 9.920524 33 0 862 0 KEEP + Vim YES AID_2 chr2 13496250 13496250 G A exonic Vim synonymous SNV NM_011701:c.G192A:p.R64R exonic Vim synonymous SNV uc008ikb.2:c.G192A:p.R64R exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.G192A:p.R64R 2qA1 NA NA chr2 13496250 CCGxTCC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.99986 36 0 0 14.469911 0.352941 0.02 -0.149031 11 6 293 164 60 60 0 0 GG 5.713509 19 0 510 0 KEEP + Vim YES AID_2 chr2 13496269 13496269 C G exonic Vim nonsynonymous SNV NM_011701:c.C211G:p.R71G exonic Vim nonsynonymous SNV uc008ikb.2:c.C211G:p.R71G exonic ENSMUSG00000026728 nonsynonymous SNV ENSMUST00000028062:c.C211G:p.R71G 2qA1 NA NA chr2 13496269 CTGxGGA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120013 0.120436 0.99649 26 0 0 9.777566 0.363636 0.02 -0.09642 7 4 181 110 60 60 0 0 CC 4.506008 15 0 365 0 KEEP + Vim NO AID_2 chr2 13496386 13496386 C T exonic Vim synonymous SNV NM_011701:c.C328T:p.L110L exonic Vim synonymous SNV uc008ikb.2:c.C328T:p.L110L exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.C328T:p.L110L 2qA1 NA NA chr2 13496386 GAGxTGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.99986 30 0 0 19.782993 0.7 0.02 -0.087691 3 7 90 191 60 60 0 0 CC 5.715181 19 0 535 0 KEEP + Vim YES AID_2 chr2 13496527 13496527 C T exonic Vim synonymous SNV NM_011701:c.C469T:p.L157L exonic Vim synonymous SNV uc008ikb.2:c.C469T:p.L157L exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.C469T:p.L157L 2qA1 NA NA chr2 13496527 GAGxTGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 73 0 0 17.214473 0.388889 0.02 -0.192927 11 7 323 191 60 60 0 0 CC 11.367025 38 0 1030 0 KEEP + Vim YES AID_2 chr2 13500227 13500227 G C exonic Vim nonsynonymous SNV NM_011701:c.G732C:p.E244D exonic Vim nonsynonymous SNV uc008ikb.2:c.G732C:p.E244D exonic ENSMUSG00000026728 nonsynonymous SNV ENSMUST00000028062:c.G732C:p.E244D 2qA1 NA NA chr2 13500227 GGAxCTG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 66 0 0 6.979236 0.1875 0.02 -0.157866 13 3 382 89 60 60 0 0 GG 12.331835 41 0 1137 0 KEEP + Vim NO AID_2 chr2 13500228 13500228 C T exonic Vim synonymous SNV NM_011701:c.C733T:p.L245L exonic Vim synonymous SNV uc008ikb.2:c.C733T:p.L245L exonic ENSMUSG00000026728 synonymous SNV ENSMUST00000028062:c.C733T:p.L245L 2qA1 NA NA chr2 13500228 GAGxTGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 68 0 0 6.679356 0.1875 0.02 -0.157867 13 3 386 86 60 60 0 0 CC 12.33345 41 0 1164 0 KEEP + Vim YES AID_2 chr2 144199101 144199101 T G UTR5 Csrp2bp NA NA UTR5 Csrp2bp NA NA UTR5 ENSMUSG00000027425 NA NA 2qG1 NA NA chr2 144199101 GAGxTGG T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 54 0 0 10.581738 0.238095 0.02 -0.1841 16 5 443 132 60 60 0 0 TT 7.517134 25 0 674 0 KEEP + Csrp2bp NO AID_2 chr2 152562267 152562267 G A exonic Id1 nonsynonymous SNV NM_010495:c.G191A:p.G64D exonic Id1 nonsynonymous SNV uc008ngf.1:c.G191A:p.G64D exonic ENSMUSG00000042745 nonsynonymous SNV ENSMUST00000038368:c.G191A:p.G64D 2qH1 NA NA chr2 152562267 ACGxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 74 0 0 32.474778 0.6 0.02 -0.175368 8 12 223 326 60 60 0 0 GG 11.904708 40 0 1024 0 KEEP + Id1 YES AID_2 chr2 152562340 152562340 G A exonic Id1 synonymous SNV NM_010495:c.G264A:p.L88L exonic Id1 synonymous SNV uc008ngf.1:c.G264A:p.L88L exonic ENSMUSG00000042745 synonymous SNV ENSMUST00000038368:c.G264A:p.L88L 2qH1 NA NA chr2 152562340 CCTxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 70 0 0 13.064562 0.230769 0.02 -0.236781 20 6 587 163 60 60 0 0 GG 10.527652 35 0 981 0 KEEP + Id1 YES AID_2 chr2 152562347 152562347 G A exonic Id1 nonsynonymous SNV NM_010495:c.G271A:p.V91I exonic Id1 nonsynonymous SNV uc008ngf.1:c.G271A:p.V91I exonic ENSMUSG00000042745 nonsynonymous SNV ENSMUST00000038368:c.G271A:p.V91I 2qH1 NA NA chr2 152562347 CATxTAA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999999 70 0 0 12.464785 0.230769 0.02 -0.228 20 6 580 157 60 60 0 0 GG 10.527926 35 0 984 0 KEEP + Id1 YES AID_2 chr2 152562385 152562385 C G exonic Id1 nonsynonymous SNV NM_010495:c.C309G:p.N103K exonic Id1 nonsynonymous SNV uc008ngf.1:c.C309G:p.N103K exonic ENSMUSG00000042745 nonsynonymous SNV ENSMUST00000038368:c.C309G:p.N103K 2qH1 NA NA chr2 152562385 GAAxTCG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 71 0 0 11.56382 0.192308 0.02 -0.227676 21 5 570 147 60 60 0 0 CC 9.623969 32 0 880 0 KEEP + Id1 NO AID_2 chr2 152562658 152562658 C A intronic Id1 NA NA intronic Id1 NA NA UTR3 ENSMUSG00000042745 NA NA 2qH1 NA NA chr2 152562658 CTCxTTG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 193 1 0 18.578812 0.160714 0.02 1.160345 47 9 1373 250 60 60 0 0 CC 30.680618 102 0 2855 0 KEEP + Id1 NO AID_2 chr2 152562734 152562734 C T exonic Id1 synonymous SNV NM_010495:c.C432T:p.R144R exonic Id1 synonymous SNV uc008ngf.1:c.C432T:p.R144R exonic ENSMUSG00000042745 synonymous SNV ENSMUST00000038368:c.C432T:p.R144R 2qH1 NA NA chr2 152562734 TCGxATC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 223 6 0 14.918001 0.113924 0.02 0.896148 70 9 2075 227 60 60 0 0 CC 30.984384 103 0 2939 0 KEEP + Id1 YES AID_2 chr2 152562737 152562737 C T exonic Id1 synonymous SNV NM_010495:c.C435T:p.I145I exonic Id1 synonymous SNV uc008ngf.1:c.C435T:p.I145I exonic ENSMUSG00000042745 synonymous SNV ENSMUST00000038368:c.C435T:p.I145I 2qH1 NA NA chr2 152562737 CATxTTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 220 6 0 17.598988 0.118421 0.02 1.0199 67 9 1995 253 60 60 0 0 CC 30.678364 102 0 2897 0 KEEP + Id1 YES AID_2 chr2 155441178 155441178 T C exonic Myh7b nonsynonymous SNV NM_001085378:c.T569C:p.V190A exonic Myh7b nonsynonymous SNV uc008nla.1:c.T569C:p.V190A exonic ENSMUSG00000074652 nonsynonymous SNV ENSMUST00000092995:c.T569C:p.V190A 2qH1 NA NA chr2 155441178 GGGxCAT T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 195 2 0 11.533972 0.09375 0.02 1.135984 58 6 1557 173 60 60 0 0 TT 26.370149 88 0 2321 0 KEEP + Myh7b NO AID_2 chr2 155860906 155860906 C T intronic Fer1l4 NA NA intronic Fer1l4 NA NA intronic ENSMUSG00000013338 NA NA 2qH1 NA NA chr2 155860906 TGGxGCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 69 0 0 25.132593 0.434783 0.02 -0.201621 13 10 342 272 60 60 0 0 CC 9.887722 33 0 772 0 KEEP - Fer1l4 YES AID_2 chr2 166880765 166880765 A C exonic Znfx1 nonsynonymous SNV NM_001033196:c.T1738G:p.F580V exonic Znfx1 nonsynonymous SNV uc008nzc.1:c.T1738G:p.F580V exonic ENSMUSG00000039501 nonsynonymous SNV ENSMUST00000048988:c.T1738G:p.F580V 2qH3 NA NA chr2 166880765 CAAxGTC A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 89 0 0 12.764887 0.230769 0.02 -0.227994 20 6 575 160 60 60 0 0 AA 16.843954 56 0 1559 0 KEEP - Znfx1 NO AID_2 chr2 167364350 167364350 C T exonic Snai1 synonymous SNV NM_011427:c.C262T:p.L88L exonic Snai1 synonymous SNV uc008nzy.1:c.C262T:p.L88L exonic ENSMUSG00000042821 synonymous SNV ENSMUST00000052631:c.C262T:p.L88L 2qH3 NA NA chr2 167364350 GAGxTGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 67 0 0 28.721772 0.5 0.02 -0.192924 11 11 319 301 60 60 0 0 CC 12.032485 40 0 1134 0 KEEP + Snai1 YES AID_2 chr2 167364385 167364385 C T exonic Snai1 synonymous SNV NM_011427:c.C297T:p.S99S exonic Snai1 synonymous SNV uc008nzy.1:c.C297T:p.S99S exonic ENSMUSG00000042821 synonymous SNV ENSMUST00000052631:c.C297T:p.S99S 2qH3 NA NA chr2 167364385 AAGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 80 0 0 22.178955 0.30303 0.02 -0.289361 23 10 663 262 60 60 0 0 CC 10.813119 36 0 990 0 KEEP + Snai1 YES AID_2 chr2 172074867 172074867 G A exonic Mc3r nonsynonymous SNV NM_008561:c.G508A:p.V170I exonic Mc3r nonsynonymous SNV uc008ocl.1:c.G508A:p.V170I exonic ENSMUSG00000038537 nonsynonymous SNV ENSMUST00000038532:c.G508A:p.V170I 2qH3 NA NA chr2 172074867 TGGxTCT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 173 2 0 45.197586 0.289855 0.02 1.081634 49 20 1388 537 60 60 0 0 GG 24.060873 80 0 2197 0 KEEP + Mc3r YES AID_2 chr2 173101559 173101559 G A intronic Pmepa1 NA NA intronic Pmepa1 NA NA intronic ENSMUSG00000038400 NA NA 2qH3 NA NA chr2 173101559 GGGxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 100 0 0 12.902751 0.25 0.02 -0.227966 18 6 513 159 60 60 0 0 GG 14.734551 49 0 1341 0 KEEP - Pmepa1 YES AID_2 chr2 173101588 173101588 C T splicing Pmepa1(NM_022995:exon2:c.97+1G>A) NA NA splicing Pmepa1(uc008odq.1:exon2:c.97+1G>A) NA NA splicing "ENSMUSG00000038400(ENSMUST00000036248:exon2:c.97+1G>A,ENSMUST00000167854:exon3:c.52+1G>A,ENSMUST00000139306:exon2:c.97+1G>A)" NA NA 2qH3 NA NA chr2 173101588 TCAxTGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 104 0 0 14.210535 0.285714 0.02 -0.219057 15 6 425 168 60 60 0 0 CC 14.739874 49 0 1396 0 KEEP - Pmepa1 YES AID_2 chr2 173101590 173101590 G A exonic Pmepa1 synonymous SNV NM_022995:c.C96T:p.I32I exonic Pmepa1 synonymous SNV uc008odq.1:c.C96T:p.I32I exonic ENSMUSG00000038400 synonymous SNV ENSMUST00000036248:c.C96T:p.I32I 2qH3 NA NA chr2 173101590 ACTxATC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 103 0 0 22.970475 0.428571 0.02 -0.219054 12 9 344 249 60 60 0 0 GG 14.137835 47 0 1346 0 KEEP - Pmepa1 YES AID_2 chr2 173101599 173101599 G A exonic Pmepa1 synonymous SNV NM_022995:c.C87T:p.S29S exonic Pmepa1 synonymous SNV uc008odq.1:c.C87T:p.S29S exonic ENSMUSG00000038400 synonymous SNV ENSMUST00000036248:c.C87T:p.S29S 2qH3 NA NA chr2 173101599 CATxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 100 0 0 21.735933 0.391304 0.02 -0.23578 14 9 388 241 60 60 0 0 GG 13.835659 46 0 1293 0 KEEP - Pmepa1 YES AID_2 chr2 173101647 173101647 C A exonic Pmepa1 nonsynonymous SNV NM_022995:c.G39T:p.Q13H exonic Pmepa1 nonsynonymous SNV uc008odq.1:c.G39T:p.Q13H exonic ENSMUSG00000038400 nonsynonymous SNV ENSMUST00000036248:c.G39T:p.Q13H 2qH3 NA NA chr2 173101647 GGGxTGC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 58 0 0 14.864836 0.375 0.02 -0.157852 10 6 292 166 60 60 0 0 CC 10.213567 34 0 931 0 KEEP - Pmepa1 NO AID_2 chr2 181114584 181114584 A C exonic Zgpat nonsynonymous SNV NM_001048148:c.A1097C:p.K366T exonic Zgpat nonsynonymous SNV uc008omc.1:c.A1097C:p.K366T exonic ENSMUSG00000027582 nonsynonymous SNV ENSMUST00000108807:c.A1097C:p.K366T 2qH4 NA NA chr2 181114584 CAAxGCG A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 90 0 0 45.359314 0.666667 0.02 -0.236267 9 18 260 443 60 60 0 0 AA 15.036839 50 0 1389 0 KEEP + Zgpat NO AID_2 chr2 25218262 25218262 C G exonic Uap1l1 nonsynonymous SNV NM_001033293:c.G1285C:p.A429P exonic Uap1l1 nonsynonymous SNV uc008irr.1:c.G1285C:p.A429P exonic ENSMUSG00000026956 nonsynonymous SNV ENSMUST00000102925:c.G1285C:p.A429P 2qA3 NA NA chr2 25218262 GAGxCAG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291961 0.292001 0.999863 43 0 0 15.469193 0.352941 0.02 -0.14909 11 6 317 174 60 60 0 0 CC 5.018659 19 1 532 6 KEEP - Uap1l1 NO AID_2 chr2 26767687 26767687 C T intronic Rpl7a NA NA intronic Rpl7a NA NA intronic ENSMUSG00000062647 NA NA 2qA3 NA NA chr2 26767687 GTGxTTC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 166 0 0 11.44173 0.105263 0.02 1.293673 51 6 1498 169 60 60 0 0 CC 24.052416 80 0 2238 0 KEEP + Rpl7a YES AID_2 chr2 38860418 38860418 G A intronic Rpl35 NA NA intronic Rpl35 NA NA UTR3 ENSMUSG00000035295 NA NA 2qB NA NA chr2 38860418 CACxGAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 155 2 0 50.589907 0.318182 0.02 1.11652 45 21 1273 585 60 60 0 0 GG 20.433864 68 0 1835 0 KEEP + Rpl35 YES AID_2 chr2 38860419 38860419 G A intronic Rpl35 NA NA intronic Rpl35 NA NA UTR3 ENSMUSG00000035295 NA NA 2qB NA NA chr2 38860419 ACGxAGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 155 2 0 51.690398 0.318182 0.02 1.116386 45 21 1334 596 60 60 0 0 GG 20.455449 68 0 1929 0 KEEP + Rpl35 YES AID_2 chr2 76562899 76562899 T C exonic Ttn synonymous SNV NM_028004:c.A66837G:p.S22279S exonic Ttn synonymous SNV uc008kfo.1:c.A66837G:p.S22279S exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000011934:c.A66837G:p.S22279S 2qC3 NA NA chr2 76562899 CTCxGAG T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.999859 43 0 0 17.651837 0.380952 0.02 -0.184105 13 8 371 199 60 60 0 0 TT 5.414189 18 0 501 0 KEEP - Ttn NO AID_2 chr2 90838829 90838829 C G exonic Celf1 nonsynonymous SNV NM_001244903:c.C83G:p.S28C exonic Celf1 nonsynonymous SNV uc008ktx.1:c.C83G:p.S28C exonic ENSMUSG00000005506 nonsynonymous SNV ENSMUST00000111448:c.C83G:p.S28C 2qE1 NA NA chr2 90838829 GGTxTGA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 79 0 0 9.080002 0.181818 0.02 -0.192957 18 4 539 117 60 60 0 0 CC 14.139397 47 0 1358 0 KEEP + Celf1 NO AID_2 chr3 106191636 106191636 C T exonic BC051070 synonymous SNV NM_178412:c.G1200A:p.L400L exonic BC051070 synonymous SNV uc008qvy.1:c.G1200A:p.L400L exonic ENSMUSG00000027902 synonymous SNV ENSMUST00000029510:c.G1200A:p.L400L 3qF2.3 NA NA chr3 106191636 CTTxAAG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 67 0 0 28.553238 0.423077 0.02 -0.228026 15 11 449 310 60 60 0 0 CC 9.626672 32 0 920 0 KEEP - BC051070 YES AID_2 chr3 107498987 107498987 G A intronic Ahcyl1 NA NA intronic Ahcyl1 NA NA intronic ENSMUSG00000027893 NA NA 3qF2.3 NA NA chr3 107498987 CTAxCCC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 30 0 0 13.023546 0.384615 0.02 -0.11401 8 5 231 144 60 60 0 0 GG 5.113873 17 0 483 0 KEEP - Ahcyl1 YES AID_2 chr3 122816762 122816762 A C exonic Synpo2 nonsynonymous SNV NM_080451:c.T1822G:p.F608V exonic Synpo2 nonsynonymous SNV uc012cxa.1:c.T1822G:p.F608V exonic ENSMUSG00000050315 nonsynonymous SNV ENSMUST00000051443:c.T1822G:p.F608V 3qG1 NA NA chr3 122816762 GGAxGTC A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 139 1 0 11.81596 0.125 0.02 -0.429665 42 6 1181 168 60 60 0 0 AA 20.082667 67 0 1796 0 KEEP - Synpo2 NO AID_2 chr3 126300403 126300403 C T exonic Camk2d nonsynonymous SNV NM_001025438:c.C46T:p.L16F exonic "Camk2d,Camk2g,mKIAA4163" nonsynonymous SNV uc008rge.1:c.C46T:p.L16F exonic ENSMUSG00000053819 nonsynonymous SNV ENSMUST00000066452:c.C46T:p.L16F 3qG1 NA NA chr3 126300403 CAGxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 449 6 0 106.219978 0.309859 0.02 2.22588 98 44 2877 1234 60 60 0 0 CC 60.740732 202 0 5649 0 KEEP + Camk2d YES AID_2 chr3 127427326 127427326 T C exonic Alpk1 synonymous SNV NM_027808:c.A243G:p.Q81Q exonic "Alpk1,mKIAA1527" synonymous SNV uc008rhl.1:c.A243G:p.Q81Q exonic ENSMUSG00000028028 synonymous SNV ENSMUST00000029662:c.A243G:p.Q81Q 3qG2 NA NA chr3 127427326 ATCxTGC T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 119 0 0 8.02117 0.097561 0.02 -0.359567 37 4 1065 118 60 60 0 0 TT 15.939244 53 0 1468 0 KEEP - Alpk1 NO AID_2 chr3 145310699 145310699 G A exonic Cyr61 synonymous SNV NM_010516:c.C1071T:p.C357C exonic Cyr61 synonymous SNV uc008rqq.2:c.C1071T:p.C357C exonic ENSMUSG00000028195 synonymous SNV ENSMUST00000029846:c.C1071T:p.C357C 3qH2 NA NA chr3 145310699 CGGxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 64 2 0 19.562445 0.347826 0.02 -0.201705 15 8 438 222 60 60 0 0 GG 8.418181 28 0 761 0 KEEP - Cyr61 YES AID_2 chr3 145311818 145311818 C T exonic Cyr61 nonsynonymous SNV NM_010516:c.G301A:p.E101K exonic Cyr61 nonsynonymous SNV uc008rqq.2:c.G301A:p.E101K exonic ENSMUSG00000028195 nonsynonymous SNV ENSMUST00000029846:c.G301A:p.E101K 3qH2 NA NA chr3 145311818 ATTxACA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099257 0.099721 0.995343 25 0 0 6.578095 0.3 0.02 -0.087696 7 3 211 78 60 60 0 0 CC 4.211614 14 0 402 0 KEEP - Cyr61 YES AID_2 chr3 145312214 145312214 G A exonic Cyr61 synonymous SNV NM_010516:c.C249T:p.S83S exonic Cyr61 synonymous SNV uc008rqq.2:c.C249T:p.S83S exonic ENSMUSG00000028195 synonymous SNV ENSMUST00000029846:c.C249T:p.S83S 3qH2 NA NA chr3 145312214 GGAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 172 0 0 9.425002 0.108696 0.02 -0.412213 41 5 1217 139 60 60 0 0 GG 25.257804 84 0 2326 0 KEEP - Cyr61 YES AID_2 chr3 145312229 145312229 G A exonic Cyr61 synonymous SNV NM_010516:c.C234T:p.C78C exonic Cyr61 synonymous SNV uc008rqq.2:c.C234T:p.C78C exonic ENSMUSG00000028195 synonymous SNV ENSMUST00000029846:c.C234T:p.C78C 3qH2 NA NA chr3 145312229 ATTxCAT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 172 1 0 25.860282 0.26087 0.02 -0.429698 34 12 1009 316 60 60 0 0 GG 25.266636 84 0 2376 0 KEEP - Cyr61 YES AID_2 chr3 145312258 145312258 G A exonic Cyr61 nonsynonymous SNV NM_010516:c.C205T:p.P69S exonic Cyr61 nonsynonymous SNV uc008rqq.2:c.C205T:p.P69S exonic ENSMUSG00000028195 nonsynonymous SNV ENSMUST00000029846:c.C205T:p.P69S 3qH2 NA NA chr3 145312258 AGGxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 153 1 0 46.476292 0.428571 0.02 -0.384479 24 18 662 503 60 60 0 0 GG 21.896842 73 0 1936 0 KEEP - Cyr61 YES AID_2 chr3 145312269 145312269 C T exonic Cyr61 nonsynonymous SNV NM_010516:c.G194A:p.S65N exonic Cyr61 nonsynonymous SNV uc008rqq.2:c.G194A:p.S65N exonic ENSMUSG00000028195 nonsynonymous SNV ENSMUST00000029846:c.G194A:p.S65N 3qH2 NA NA chr3 145312269 TTGxTGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 138 1 0 29.452376 0.342857 0.02 -0.341989 23 12 668 335 60 60 0 1 CC 18.891132 68 1 1936 14 KEEP - Cyr61 YES AID_2 chr3 145312277 145312277 C T exonic Cyr61 synonymous SNV NM_010516:c.G186A:p.E62E exonic Cyr61 synonymous SNV uc008rqq.2:c.G186A:p.E62E exonic ENSMUSG00000028195 synonymous SNV ENSMUST00000029846:c.G186A:p.E62E 3qH2 NA NA chr3 145312277 GTCxTCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 122 1 0 22.238069 0.28125 0.02 -0.324505 23 9 675 262 60 60 0 0 CC 18.868571 63 0 1720 0 KEEP - Cyr61 YES AID_2 chr3 145312293 145312293 G A exonic Cyr61 nonsynonymous SNV NM_010516:c.C170T:p.A57V exonic Cyr61 nonsynonymous SNV uc008rqq.2:c.C170T:p.A57V exonic ENSMUSG00000028195 nonsynonymous SNV ENSMUST00000029846:c.C170T:p.A57V 3qH2 NA NA chr3 145312293 TTAxCGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 96 1 0 19.062185 0.347826 0.02 -0.245544 15 8 439 217 60 60 0 0 GG 15.940055 53 0 1471 0 KEEP - Cyr61 YES AID_2 chr3 145312311 145312311 C T exonic Cyr61 nonsynonymous SNV NM_010516:c.G152A:p.G51D exonic Cyr61 nonsynonymous SNV uc008rqq.2:c.G152A:p.G51D exonic ENSMUSG00000028195 nonsynonymous SNV ENSMUST00000029846:c.G152A:p.G51D 3qH2 NA NA chr3 145312311 CAGxCGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 82 1 0 19.368751 0.4 0.02 -0.227941 12 8 334 214 60 60 0 0 CC 14.666481 49 0 1296 0 KEEP - Cyr61 YES AID_2 chr3 145312665 145312665 C T intronic Cyr61 NA NA intronic Cyr61 NA NA intronic ENSMUSG00000028195 NA NA 3qH2 NA NA chr3 145312665 AAGxAGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 1 62 0 0 6.513763 0.5 0.02 -0.121785 4 4 109 71 60 60 0 0 CC 11.105621 37 0 989 0 KEEP - Cyr61 YES AID_2 chr3 145312752 145312752 C T exonic Cyr61 nonsynonymous SNV NM_010516:c.G5A:p.S2N exonic Cyr61 nonsynonymous SNV uc008rqq.2:c.G5A:p.S2N exonic ENSMUSG00000028195 nonsynonymous SNV ENSMUST00000029846:c.G5A:p.S2N 3qH2 NA NA chr3 145312752 GAGxTCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999998 54 0 0 9.371084 0.285714 0.02 -0.131551 10 4 296 111 60 60 0 0 CC 9.90893 33 0 904 0 KEEP - Cyr61 YES AID_2 chr3 151873555 151873555 G A UTR5 Fubp1 NA NA UTR5 Fubp1 NA NA UTR5 ENSMUSG00000028034 NA NA 3qH3 NA NA chr3 151873555 TGGxTAT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 319 7 0 14.877475 0.070312 0.02 2.161824 119 9 3389 247 60 60 0 0 GG 39.032075 130 0 3541 0 KEEP + Fubp1 YES AID_2 chr3 46855517 46855517 G T intergenic "Pabpc4l(dist=603654),Gm7977(dist=974417)" NA NA intergenic "Pabpc4l(dist=603654),DQ556350(dist=1223209)" NA NA ncRNA_exonic ENSMUSG00000072387 NA NA 3qC NA NA chr3 46855517 TCCxGGA G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 220 5 0 10.954455 0.075949 0.02 1.065872 73 6 1970 173 70 37 0 0 GG 32.441277 108 0 2822 0 KEEP NA Pabpc4l NO AID_2 chr3 58220910 58220910 G A exonic Tsc22d2 nonsynonymous SNV NM_001081229:c.G1300A:p.V434I exonic Tsc22d2 nonsynonymous SNV uc008php.1:c.G1300A:p.V434I exonic ENSMUSG00000027806 nonsynonymous SNV ENSMUST00000099090:c.G1300A:p.V434I 3qD NA NA chr3 58220910 CCTxTAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139529 0.139832 0.997832 32 0 0 6.532502 0.272727 0.02 -0.105102 8 3 222 79 60 60 0 0 GG 4.813183 16 0 457 0 KEEP + Tsc22d2 YES AID_2 chr3 58221093 58221093 G A exonic Tsc22d2 nonsynonymous SNV NM_001081229:c.G1483A:p.V495I exonic Tsc22d2 nonsynonymous SNV uc008php.1:c.G1483A:p.V495I exonic ENSMUSG00000027806 nonsynonymous SNV ENSMUST00000099090:c.G1483A:p.V495I 3qD NA NA chr3 58221093 GGAxTTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 75 0 0 30.919183 0.428571 0.02 -0.245535 16 12 462 335 60 60 0 0 GG 12.331634 41 0 1136 0 KEEP + Tsc22d2 YES AID_2 chr3 65761735 65761735 G A exonic Ccnl1 nonsynonymous SNV NM_019937:c.C316T:p.P106S exonic Ccnl1 nonsynonymous SNV uc008pku.1:c.C316T:p.P106S exonic ENSMUSG00000027829 nonsynonymous SNV ENSMUST00000029415:c.C316T:p.P106S 3qE1 NA NA chr3 65761735 GCGxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138789 0.139832 0.99254 25 0 0 7.101211 0.25 0.02 -0.105246 9 3 267 86 60 60 0 0 GG 2.707118 9 0 251 0 KEEP - Ccnl1 YES AID_2 chr3 68298517 68298517 G A exonic "Gm21949,Schip1" nonsynonymous SNV NM_001113421:c.G88A:p.D30N exonic "Iqcj-schip1,Schip1" nonsynonymous SNV uc008plr.2:c.G4A:p.D2N exonic ENSMUSG00000027777 nonsynonymous SNV ENSMUST00000029346:c.G22A:p.D8N 3qE1 NA NA chr3 68298517 ATGxATC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139181 0.139832 0.995343 36 0 0 10.091249 0.333333 0.02 -0.10524 8 4 232 115 60 60 0 0 GG 4.211029 14 0 392 0 KEEP + Gm21949 YES AID_2 chr3 79690541 79690541 G A exonic Fam198b synonymous SNV NM_133187:c.G393A:p.K131K exonic Fam198b synonymous SNV uc008pny.2:c.G393A:p.K131K exonic ENSMUSG00000027955 synonymous SNV ENSMUST00000029567:c.G393A:p.K131K 3qE3 NA NA chr3 79690541 GAAxAAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 52 2 0 6.774428 0.2 0.02 -0.131409 12 3 344 86 60 60 0 0 GG 9.0243 30 0 855 0 KEEP + Fam198b YES AID_2 chr3 80841362 80841362 C T exonic Pdgfc nonsynonymous SNV NM_019971:c.C4T:p.L2F exonic Pdgfc nonsynonymous SNV uc008poj.1:c.C4T:p.L2F exonic ENSMUSG00000028019 nonsynonymous SNV ENSMUST00000029652:c.C4T:p.L2F 3qE3 NA NA chr3 80841362 ATGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 111 0 0 8.768149 0.092593 0.02 1.116373 49 5 1385 136 60 60 0 0 CC 15.898628 53 0 1408 0 KEEP + Pdgfc YES AID_2 chr3 88306699 88306699 C T exonic Lmna synonymous SNV NM_001002011:c.G327A:p.V109V exonic Lmna synonymous SNV uc008pvj.2:c.G327A:p.V109V exonic ENSMUSG00000028063 synonymous SNV ENSMUST00000029699:c.G327A:p.V109V 3qF1 NA NA chr3 88306699 ACGxACT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 126 2 0 27.431873 0.315789 0.02 -0.359533 26 12 755 320 60 60 0 0 CC 20.453668 68 0 1900 0 KEEP - Lmna YES AID_2 chr3 88306773 88306773 G A exonic Lmna synonymous SNV NM_001002011:c.C253T:p.L85L exonic Lmna synonymous SNV uc008pvj.2:c.C253T:p.L85L exonic ENSMUSG00000028063 synonymous SNV ENSMUST00000029699:c.C253T:p.L85L 3qF1 NA NA chr3 88306773 CCAxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 178 0 0 47.88801 0.431818 0.02 -0.38579 25 19 726 519 60 60 0 0 GG 30.918232 103 0 2806 0 KEEP - Lmna YES AID_2 chr3 90045911 90045911 C T exonic Creb3l4 synonymous SNV NM_030080:c.G411A:p.S137S exonic Creb3l4 synonymous SNV uc008qbp.1:c.G246A:p.S82S exonic ENSMUSG00000027938 synonymous SNV ENSMUST00000029547:c.G411A:p.S137S 3qF1 NA NA chr3 90045911 ATGxGAA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 118 0 0 29.91928 0.309524 0.02 -0.368156 29 13 761 350 60 60 0 0 CC 17.720598 59 0 1419 0 KEEP - Creb3l4 YES AID_2 chr3 90417749 90417749 G A exonic S100a6 nonsynonymous SNV NM_011313:c.G61A:p.G21S exonic S100a6 nonsynonymous SNV uc008qdb.1:c.G61A:p.G21S exonic ENSMUSG00000001025 nonsynonymous SNV ENSMUST00000001051:c.G61A:p.G21S 3qF1 NA NA chr3 90417749 TCTxGCA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 143 0 0 41.21126 0.333333 0.02 1.23933 34 17 1015 472 60 60 0 1 GG 18.650351 62 0 1761 0 KEEP + S100a6 YES AID_2 chr3 90417750 90417750 G A exonic S100a6 nonsynonymous SNV NM_011313:c.G62A:p.G21D exonic S100a6 nonsynonymous SNV uc008qdb.1:c.G62A:p.G21D exonic ENSMUSG00000001025 nonsynonymous SNV ENSMUST00000001051:c.G62A:p.G21D 3qF1 NA NA chr3 90417750 CTGxCAA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 145 0 0 44.5197 0.346154 0.02 1.329709 34 18 995 505 60 60 0 1 GG 18.647844 62 0 1711 0 KEEP + S100a6 YES AID_2 chr3 90417766 90417766 G A exonic S100a6 synonymous SNV NM_011313:c.G78A:p.K26K exonic S100a6 synonymous SNV uc008qdb.1:c.G78A:p.K26K exonic ENSMUSG00000001025 synonymous SNV ENSMUST00000001051:c.G78A:p.K26K 3qF1 NA NA chr3 90417766 CAAxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 146 0 0 32.56065 0.259259 0.02 1.293641 40 14 1173 393 60 60 0 1 GG 19.218409 64 0 1756 0 KEEP + S100a6 YES AID_2 chr3 93248220 93248220 T C exonic Tchh synonymous SNV NM_001163098:c.T1044C:p.R348R exonic Tchh synonymous SNV uc012cti.1:c.T1044C:p.R348R exonic ENSMUSG00000052415 synonymous SNV ENSMUST00000064257:c.T1044C:p.R348R 3qF2.1 NA NA chr3 93248220 GCGxGAG T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 133 4 0 34.879597 0.348837 0.02 -0.376899 28 15 764 398 60 60 0 0 TT 17.17073 65 1 1739 22 KEEP + Tchh NO AID_2 chr3 96024009 96024009 G A exonic Hist2h2ab synonymous SNV NM_178213:c.G171A:p.E57E exonic Hist2h2ab synonymous SNV uc008qmh.1:c.G171A:p.E57E exonic ENSMUSG00000063689 synonymous SNV ENSMUST00000073115:c.G171A:p.E57E 3qF2.1 NA NA chr3 96024009 GGAxTAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 59 0 0 20.809928 0.470588 0.02 -0.149081 9 8 264 221 60 60 0 0 GG 8.72199 29 0 808 0 KEEP + Hist2h2ab YES AID_2 chr3 96024355 96024355 C T upstream;downstream "Hist2h2be;Hist2h2ab,Hist2h2ac" NA NA upstream;downstream "Hist2h2be;Hist2h2ab,Hist2h2ac" NA NA UTR3 ENSMUSG00000068855 NA NA 3qF2.1 NA NA chr3 96024355 GAGxCTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 57 0 0 16.615181 0.35 0.02 -0.175386 13 7 376 189 60 60 0 0 CC 8.721599 29 0 786 0 KEEP NA Hist2h2be YES AID_2 chr3 96024416 96024416 G A exonic Hist2h2ac nonsynonymous SNV NM_175662:c.C352T:p.P118S exonic Hist2h2ac nonsynonymous SNV uc008qmi.1:c.C352T:p.P118S exonic ENSMUSG00000068855 nonsynonymous SNV ENSMUST00000090782:c.C352T:p.P118S 3qF2.1 NA NA chr3 96024416 TGGxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 122 0 0 27.969574 0.27907 0.02 -0.377101 31 12 905 333 60 60 0 0 GG 17.072782 57 0 1534 0 KEEP - Hist2h2ac YES AID_2 chr3 96024572 96024572 G A exonic Hist2h2ac synonymous SNV NM_175662:c.C196T:p.L66L exonic Hist2h2ac synonymous SNV uc008qmi.1:c.C196T:p.L66L exonic ENSMUSG00000068855 synonymous SNV ENSMUST00000090782:c.C196T:p.L66L 3qF2.1 NA NA chr3 96024572 CCAxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522114 0.522161 0.999909 55 0 5 21.796968 0.375 0.02 -0.210458 15 9 429 244 57 29 0 0 GG 8.119807 27 0 732 0 KEEP - Hist2h2ac YES AID_2 chr3 96043670 96043670 G A UTR3 "Hist2h2aa1,Hist2h2aa2" NA NA UTR3 Hist2h2aa2 NA NA UTR3 ENSMUSG00000064220 NA NA 3qF2.1 "Score=0.997155;Name=No.81851,chr3:96049180" NA chr3 96043670 CCGxCTA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 349 5 138 17.831166 0.155172 0.02 1.045288 49 9 1402 244 37 36 0 0 GG 46.622283 165 1 4458 28 KEEP - Hist2h2aa1 YES AID_2 chr3 96051947 96051947 G A UTR3 Hist2h3c1 NA NA downstream Hist2h3c1 NA NA UTR3 ENSMUSG00000070392 NA NA 3qF2.1 NA NA chr3 96051947 ATAxATA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 300 4 0 99.68735 0.336134 0.02 2.44509 79 40 2352 1136 60 60 0 0 GG 41.200113 137 0 3908 0 KEEP NA Hist2h3c1 YES AID_2 chr4 115527654 115527654 A T intronic Mknk1 NA NA intronic Mknk1 NA NA intronic ENSMUSG00000028708 NA NA 4qD1 NA NA chr4 115527654 TTGxGTA A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 388 4 0 46.564841 0.113208 0.02 4.921663 188 24 5447 676 60 60 0 0 AA 34.890935 116 0 3245 0 KEEP + Mknk1 NO AID_2 chr4 120642125 120642125 C G UTR3 Smap2 NA NA UTR3 Smap2 NA NA UTR3 ENSMUSG00000032870 NA NA 4qD2.2 NA NA chr4 120642125 CAGxCAT C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.581666 0.58293 0.997832 48 0 0 14.281204 0.24 0.02 -0.227991 19 6 540 174 60 60 0 0 CC 4.81108 16 0 428 0 KEEP - Smap2 NO AID_2 chr4 125933238 125933238 C T intronic Map7d1 NA NA intronic Mtap7d1 NA NA intronic ENSMUSG00000028849 NA NA 4qD2.2 NA NA chr4 125933238 TCGxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.999863 36 0 0 9.884662 0.4 0.02 -0.087692 6 4 173 109 60 70 0 0 CC 6.013832 20 0 542 0 KEEP - Map7d1 YES AID_2 chr4 135699983 135699983 C T exonic Id3 nonsynonymous SNV NM_008321:c.C190T:p.L64F exonic Id3 nonsynonymous SNV uc012dnf.1:c.C190T:p.L64F exonic ENSMUSG00000007872 nonsynonymous SNV ENSMUST00000008016:c.C190T:p.L64F 4qD3 NA NA chr4 135699983 CAGxTTA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 250 2 0 35.939503 0.294118 0.02 1.337487 36 15 1059 422 60 60 0 0 CC 42.682386 142 0 3975 0 KEEP + Id3 YES AID_2 chr4 135700007 135700007 C T exonic Id3 nonsynonymous SNV NM_008321:c.C214T:p.R72C exonic Id3 nonsynonymous SNV uc012dnf.1:c.C214T:p.R72C exonic ENSMUSG00000007872 nonsynonymous SNV ENSMUST00000008016:c.C214T:p.R72C 4qD3 NA NA chr4 135700007 CAGxGTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 206 0 0 174.82252 1 0.02 1.212951 0 54 0 1491 0 60 0 0 CC 36.877165 123 0 2966 0 KEEP + Id3 YES AID_2 chr4 135700096 135700096 G A intronic Id3 NA NA intronic Id3 NA NA intronic ENSMUSG00000007872 NA NA 4qD3 NA NA chr4 135700096 GGTxCGA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 185 2 0 51.223013 0.4375 0.02 1.080039 27 21 793 555 60 60 0 1 GG 32.154452 107 0 2972 0 KEEP + Id3 YES AID_2 chr4 135700180 135700180 C T intronic Id3 NA NA intronic Id3 NA NA intronic ENSMUSG00000007872 NA NA 4qD3 NA NA chr4 135700180 TGGxTAA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 286 2 0 56.481539 0.583333 0.02 1.232434 15 21 446 571 60 60 0 0 CC 53.486229 178 0 4924 0 KEEP + Id3 YES AID_2 chr4 135700213 135700213 C G exonic Id3 nonsynonymous SNV NM_008321:c.C305G:p.A102G exonic Id3 nonsynonymous SNV uc012dnf.1:c.C305G:p.A102G exonic ENSMUSG00000007872 nonsynonymous SNV ENSMUST00000008016:c.C305G:p.A102G 4qD3 NA NA chr4 135700213 CAGxTGA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 320 4 0 113.680102 1 0.02 1.180388 0 35 0 971 0 60 0 1 CC 59.165494 197 0 5441 0 KEEP + Id3 NO AID_2 chr4 135700217 135700217 G A exonic Id3 synonymous SNV NM_008321:c.G309A:p.E103E exonic Id3 synonymous SNV uc012dnf.1:c.G309A:p.E103E exonic ENSMUSG00000007872 synonymous SNV ENSMUST00000008016:c.G309A:p.E103E 4qD3 NA NA chr4 135700217 TGAxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 325 6 0 17.462748 0.235294 0.02 1.107667 26 8 760 217 60 60 0 1 GG 57.492174 195 1 5415 10 KEEP + Id3 YES AID_2 chr4 135700233 135700233 G A exonic Id3 nonsynonymous SNV NM_008321:c.G325A:p.V109M exonic Id3 nonsynonymous SNV uc012dnf.1:c.G325A:p.V109M exonic ENSMUSG00000007872 nonsynonymous SNV ENSMUST00000008016:c.G325A:p.V109M 4qD3 NA NA chr4 135700233 CTTxTGA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 320 6 0 14.541869 0.21875 0.02 1.027927 25 7 727 185 60 60 0 0 GG 56.218295 187 0 5161 0 KEEP + Id3 YES AID_2 chr4 145489259 145489259 G C intergenic "Gm13238(dist=61364),1700095A21Rik(dist=161907)" NA NA exonic Gm13051 nonsynonymous SNV uc008vsa.1:c.G585C:p.Q195H exonic ENSMUSG00000078500 nonsynonymous SNV ENSMUST00000123460:c.G585C:p.Q195H 4qE1 "Score=0.986863;Name=No.86634,chr4:146677141" NA chr4 145489259 CCAxAGA G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 151 1 59 29.268014 0.27907 0.02 -0.38582 31 12 920 346 37 60 0 0 GG 17.147532 57 0 1638 0 KEEP + Gm13238 NO AID_2 chr4 148831709 148831709 T G intergenic "Rbp7(dist=2632),Nmnat1(dist=11187)" NA NA intergenic "Rbp7(dist=2632),Nmnat1(dist=9972)" NA NA ncRNA_exonic ENSMUSG00000070572 NA NA 4qE2 NA NA chr4 148831709 AGGxTGA T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986151 0.986153 0.999997 177 2 59 24.318975 0.189655 0.02 1.276145 47 11 1320 313 60 60 0 0 TT 17.441546 58 0 1575 0 KEEP NA Rbp7 NO AID_2 chr4 154595917 154595917 C T exonic Ski nonsynonymous SNV NM_011385:c.G713A:p.S238N exonic Ski nonsynonymous SNV uc008wcz.1:c.G713A:p.S238N exonic ENSMUSG00000029050 nonsynonymous SNV ENSMUST00000030917:c.G713A:p.S238N 4qE2 NA NA chr4 154595917 CTGxTGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 213 0 0 55.975161 0.37931 0.02 1.186561 36 22 1061 622 60 60 0 0 CC 38.495918 128 0 3613 0 KEEP - Ski YES AID_2 chr4 154595958 154595958 G A exonic Ski synonymous SNV NM_011385:c.C672T:p.C224C exonic Ski synonymous SNV uc008wcz.1:c.C672T:p.C224C exonic ENSMUSG00000029050 synonymous SNV ENSMUST00000030917:c.C672T:p.C224C 4qE2 NA NA chr4 154595958 GAAxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 153 0 0 39.2061 0.363636 0.02 -0.385862 28 16 815 441 60 60 0 0 GG 26.857742 92 1 2559 7 KEEP - Ski YES AID_2 chr4 154596063 154596063 C T exonic Ski synonymous SNV NM_011385:c.G567A:p.L189L exonic Ski synonymous SNV uc008wcz.1:c.G567A:p.L189L exonic ENSMUSG00000029050 synonymous SNV ENSMUST00000030917:c.G567A:p.L189L 4qE2 NA NA chr4 154596063 GAGxAGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 107 0 0 43.475342 0.485714 0.02 -0.306902 18 17 515 459 60 60 0 0 CC 19.489226 65 0 1789 0 KEEP - Ski YES AID_2 chr4 154596201 154596201 G A exonic Ski synonymous SNV NM_011385:c.C429T:p.C143C exonic Ski synonymous SNV uc008wcz.1:c.C429T:p.C143C exonic ENSMUSG00000029050 synonymous SNV ENSMUST00000030917:c.C429T:p.C143C 4qE2 NA NA chr4 154596201 ATCxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 180 2 0 38.227846 0.307692 0.02 1.240767 36 16 909 445 60 60 0 0 GG 31.170987 104 0 2529 0 KEEP - Ski YES AID_2 chr4 43536120 43536120 C T exonic Tpm2 nonsynonymous SNV NM_001277875:c.G107A:p.C36Y exonic Tpm2 nonsynonymous SNV uc008sqb.1:c.G107A:p.C36Y exonic ENSMUSG00000028464 nonsynonymous SNV ENSMUST00000030184:c.G107A:p.C36Y 4qB1 NA NA chr4 43536120 TTGxATC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 470 4 0 58.807079 0.137168 0.02 4.499001 195 31 5634 832 60 60 0 0 CC 45.691761 152 0 4206 0 KEEP - Tpm2 YES AID_2 chr4 43795068 43795068 C T ncRNA_exonic Olfr29-ps1 NA NA exonic Olfr155 nonsynonymous SNV uc012ddf.1:c.G43A:p.G15S ncRNA_exonic ENSMUSG00000081420 NA NA 4qB1 NA NA chr4 43795068 TACxGTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 140 0 0 23.123279 0.150685 0.02 1.145212 62 11 1589 313 60 60 0 0 CC 14.385016 48 0 1157 0 KEEP - Olfr29-ps1 YES AID_2 chr4 55544721 55544721 G A intronic Klf4 NA NA intronic Klf4 NA NA intronic ENSMUSG00000003032 NA NA 4qB3 NA NA chr4 55544721 CAAxTCC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 223 1 0 60.419994 0.282609 0.02 0.888551 66 26 1919 718 60 60 0 0 GG 24.645165 82 0 2283 0 KEEP - Klf4 YES AID_2 chr4 62171791 62171791 A T exonic Alad synonymous SNV NM_001276446:c.T651A:p.A217A exonic Alad synonymous SNV uc008tez.1:c.T651A:p.A217A exonic ENSMUSG00000028393 synonymous SNV ENSMUST00000030090:c.T651A:p.A217A 4qB3 NA NA chr4 62171791 AAAxGCT A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 278 4 0 22.639079 0.094203 0.02 2.278581 125 13 3623 351 60 60 0 0 AA 21.656814 72 0 2005 0 KEEP - Alad NO AID_2 chr4 62362182 62362182 C G exonic Rgs3 nonsynonymous SNV NM_134257:c.C2663G:p.A888G exonic Rgs3 nonsynonymous SNV uc012dfv.1:c.C8G:p.A3G exonic ENSMUSG00000059810 nonsynonymous SNV ENSMUST00000107430:c.C269G:p.A90G 4qB3 NA NA chr4 62362182 CAGxCAA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 161 1 0 18.926547 0.125 0.02 1.154165 63 9 1790 264 60 60 0 0 CC 17.351182 58 0 1515 0 KEEP + Rgs3 NO AID_2 chr4 66502155 66502155 C G exonic Tlr4 nonsynonymous SNV NM_021297:c.C2150G:p.A717G exonic Tlr4 nonsynonymous SNV uc008thv.1:c.C2150G:p.A717G exonic ENSMUSG00000039005 nonsynonymous SNV ENSMUST00000048096:c.C2150G:p.A717G 4qC1 NA NA chr4 66502155 TTGxTGC C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 81 2 0 7.759786 0.111111 0.02 -0.324078 32 4 939 113 60 60 0 0 CC 10.52861 35 0 995 0 KEEP + Tlr4 NO AID_2 chr4 86302977 86302977 G C exonic Plin2 nonsynonymous SNV NM_007408:c.C1238G:p.A413G exonic Plin2 nonsynonymous SNV uc008tlz.1:c.C1238G:p.A413G exonic ENSMUSG00000028494 nonsynonymous SNV ENSMUST00000000466:c.C1238G:p.A413G 4qC4 "Score=0.936298;Name=No.86310,chr4:86269307" NA chr4 86302977 CTGxCCT G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 132 0 0 17.240561 0.145161 0.02 1.242022 53 9 1530 240 60 60 0 0 GG 12.931845 43 0 1182 0 KEEP - Plin2 NO AID_2 chr4 94717081 94717081 G C exonic Jun nonsynonymous SNV NM_010591:c.C882G:p.N294K exonic Jun nonsynonymous SNV uc008tsq.2:c.C882G:p.N294K exonic ENSMUSG00000052684 nonsynonymous SNV ENSMUST00000107094:c.C882G:p.N294K 4qC5 NA NA chr4 94717081 GGAxTTT G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 426 2 0 71.280911 0.173684 0.02 3.903385 157 33 4535 936 60 60 0 0 GG 48.987215 163 0 4490 0 KEEP - Jun NO AID_2 chr4 94717116 94717116 G A exonic Jun synonymous SNV NM_010591:c.C847T:p.L283L exonic Jun synonymous SNV uc008tsq.2:c.C847T:p.L283L exonic ENSMUSG00000052684 synonymous SNV ENSMUST00000107094:c.C847T:p.L283L 4qC5 NA NA chr4 94717116 CTAxCCG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 455 2 0 56.645122 0.141414 0.02 5.125592 170 28 4938 783 60 60 0 0 GG 51.928466 180 2 5018 19 KEEP - Jun YES AID_2 chr4 94717584 94717584 G A exonic Jun nonsynonymous SNV NM_010591:c.C379T:p.L127F exonic Jun nonsynonymous SNV uc008tsq.2:c.C379T:p.L127F exonic ENSMUSG00000052684 nonsynonymous SNV ENSMUST00000107094:c.C379T:p.L127F 4qC5 NA NA chr4 94717584 GAAxCGT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 148 4 0 10.994523 0.08 0.02 1.028861 69 6 2023 172 60 60 0 0 GG 15.626906 52 0 1458 0 KEEP - Jun YES AID_2 chr4 94717586 94717586 G T exonic Jun nonsynonymous SNV NM_010591:c.C377A:p.T126K exonic Jun nonsynonymous SNV uc008tsq.2:c.C377A:p.T126K exonic ENSMUSG00000052684 nonsynonymous SNV ENSMUST00000107094:c.C377A:p.T126K 4qC5 NA NA chr4 94717586 AGCxTGT G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 153 4 0 18.499285 0.118421 0.02 1.118679 67 9 1686 262 60 60 0 0 GG 16.212449 54 0 1250 0 KEEP - Jun NO AID_2 chr4 94717645 94717645 C T exonic Jun synonymous SNV NM_010591:c.G318A:p.E106E exonic Jun synonymous SNV uc008tsq.2:c.G318A:p.E106E exonic ENSMUSG00000052684 synonymous SNV ENSMUST00000107094:c.G318A:p.E106E 4qC5 NA NA chr4 94717645 CTGxTCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 275 4 0 13.216666 0.065574 0.02 2.311747 114 8 3318 222 60 60 0 0 CC 29.158872 97 0 2663 0 KEEP - Jun YES AID_2 chr4 94717705 94717705 C T exonic Jun synonymous SNV NM_010591:c.G258A:p.G86G exonic Jun synonymous SNV uc008tsq.2:c.G258A:p.G86G exonic ENSMUSG00000052684 synonymous SNV ENSMUST00000107094:c.G258A:p.G86G 4qC5 NA NA chr4 94717705 GTGxCCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 256 1 0 11.410782 0.06087 0.02 2.374179 108 7 3112 195 60 60 0 0 CC 29.446181 98 0 2645 0 KEEP - Jun YES AID_2 chr4 94717738 94717738 C T exonic Jun synonymous SNV NM_010591:c.G225A:p.E75E exonic Jun synonymous SNV uc008tsq.2:c.G225A:p.E75E exonic ENSMUSG00000052684 synonymous SNV ENSMUST00000107094:c.G225A:p.E75E 4qC5 NA NA chr4 94717738 CAGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 230 1 0 47.603752 0.213592 0.02 2.478413 81 22 2395 603 60 60 0 0 CC 27.067225 90 0 2492 0 KEEP - Jun YES AID_2 chr4 94717892 94717892 C A exonic Jun nonsynonymous SNV NM_010591:c.G71T:p.G24V exonic Jun nonsynonymous SNV uc008tsq.2:c.G71T:p.G24V exonic ENSMUSG00000052684 nonsynonymous SNV ENSMUST00000107094:c.G71T:p.G24V 4qC5 NA NA chr4 94717892 GCAxCGC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 172 0 0 31.58035 0.174419 0.02 1.039358 71 15 2023 417 60 60 0 0 CC 20.150467 67 0 1828 0 KEEP - Jun NO AID_2 chr4 94718047 94718047 G A UTR5 Jun NA NA UTR5 Jun NA NA UTR5 ENSMUSG00000052684 NA NA 4qC5 NA NA chr4 94718047 GGGxATA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 204 3 0 28.241243 0.142857 0.02 0.827456 84 14 2389 390 60 60 0 0 GG 23.731201 79 0 2165 0 KEEP - Jun YES AID_2 chr4 94718088 94718088 G C UTR5 Jun NA NA UTR5 Jun NA NA UTR5 ENSMUSG00000052684 NA NA 4qC5 NA NA chr4 94718088 TAGxAGC G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 184 0 0 22.605608 0.123596 0.02 1.19303 78 11 2299 318 60 60 0 0 GG 22.797077 76 0 2113 0 KEEP - Jun NO AID_2 chr4 94718206 94718206 G A UTR5 Jun NA NA UTR5 Jun NA NA UTR5 ENSMUSG00000052684 NA NA 4qC5 NA NA chr4 94718206 CGAxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 108 0 0 12.157448 0.122449 0.02 -0.438475 43 6 1241 172 60 60 0 0 GG 14.136683 47 0 1307 0 KEEP - Jun YES AID_2 chr4 94718419 94718419 G A UTR5 Jun NA NA UTR5 Jun NA NA ncRNA_exonic ENSMUSG00000087366 NA NA 4qC5 NA NA chr4 94718419 GCGxCTA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 74 0 0 7.637358 0.129032 0.02 -0.271712 27 4 731 109 60 60 0 0 GG 10.223658 34 0 913 0 KEEP - Jun YES AID_2 chr5 104503918 104503918 A C intronic Gm17660 NA NA intronic Scpppq1 NA NA intronic ENSMUSG00000091034 NA NA 5qE5 NA NA chr5 104503918 TGAxGAC A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 157 0 0 99.504002 0.588235 0.02 1.099456 28 40 811 1005 60 60 0 0 AA 18.047157 60 0 1684 0 KEEP - Gm17660 NO AID_2 chr5 109649556 109649556 A C exonic Vmn2r14 synonymous SNV NM_001104625:c.T588G:p.T196T exonic Vmn2r14 synonymous SNV uc009vdl.1:c.T588G:p.T196T exonic ENSMUSG00000091059 synonymous SNV ENSMUST00000170341:c.T588G:p.T196T 5qF NA NA chr5 109649556 CAAxGTG A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 501 2 0 13.07715 0.042373 0.02 4.319866 226 10 6473 262 60 60 0 0 AA 57.752296 192 0 5371 0 KEEP - Vmn2r14 NO AID_2 chr5 111083026 111083026 C T exonic Ddx51 nonsynonymous SNV NM_027156:c.C431T:p.P144L exonic Ddx51 nonsynonymous SNV uc008yre.2:c.C431T:p.P144L exonic ENSMUSG00000029504 nonsynonymous SNV ENSMUST00000031478:c.C431T:p.P144L 5qF NA NA chr5 111083026 CGCxGAA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 176 4 0 35.299641 0.222222 0.02 1.155096 56 16 1412 442 60 60 0 0 CC 21.904954 73 0 1845 0 KEEP + Ddx51 YES AID_2 chr5 124842676 124842676 C A exonic Sbno1 synonymous SNV NM_001081203:c.G2568T:p.L856L exonic Sbno1 synonymous SNV uc008zpp.1:c.G2565T:p.L855L exonic ENSMUSG00000038095 synonymous SNV ENSMUST00000065263:c.G2568T:p.L856L 5qF NA NA chr5 124842676 AAGxAGG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 212 2 0 95.884353 0.361905 0.02 2.469741 67 38 1974 1076 60 60 0 0 CC 25.261777 84 0 2383 0 KEEP - Sbno1 NO AID_2 chr5 125869828 125869828 G A intronic Ubc NA NA intronic "Uba52,Ubb,Ubc" NA NA exonic ENSMUSG00000072612 nonsynonymous SNV ENSMUST00000100700:c.G137A:p.R46Q 5qG1.1 NA NA chr5 125869828 ACCxGAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 145 0 0 32.791438 0.223881 0.02 1.099127 52 15 1372 411 60 60 0 0 GG 18.037052 60 0 1574 0 KEEP - Ubc YES AID_2 chr5 125869829 125869829 G T intronic Ubc NA NA intronic "Uba52,Ubb,Ubc" NA NA exonic ENSMUSG00000072612 synonymous SNV ENSMUST00000100700:c.G138T:p.R46R 5qG1.1 NA NA chr5 125869829 CCGxAGG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 144 0 0 30.802622 0.227273 0.02 1.010051 51 15 1475 390 60 60 0 0 GG 18.047824 60 0 1690 0 KEEP - Ubc NO AID_2 chr5 13399957 13399957 C T UTR5 Sema3a NA NA UTR5 Sema3a NA NA UTR5 ENSMUSG00000028883 NA NA 5qA1 NA NA chr5 13399957 CAGxATG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612341 0.612407 0.999892 63 0 0 18.492113 0.296296 0.02 -0.23674 19 8 546 218 60 60 0 0 CC 6.918358 23 0 647 0 KEEP + Sema3a YES AID_2 chr5 136209423 136209423 C G exonic Por nonsynonymous SNV NM_008898:c.C1109G:p.A370G exonic Por nonsynonymous SNV uc008zyt.1:c.C1109G:p.A370G exonic ENSMUSG00000005514 nonsynonymous SNV ENSMUST00000005651:c.C1109G:p.A370G 5qG2 NA NA chr5 136209423 CGGxCCT C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 284 2 0 27.969719 0.115702 0.02 2.455824 107 14 3068 401 60 60 0 0 CC 29.411232 98 0 2667 0 KEEP + Por NO AID_2 chr5 137041376 137041376 G T intronic Cux1 NA NA exonic Cux1 synonymous SNV uc009aaj.1:c.C192A:p.T64T exonic ENSMUSG00000029705 synonymous SNV ENSMUST00000065599:c.C192A:p.T64T 5qG2 NA NA chr5 137041376 AGGxGTG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 97 4 0 9.228209 0.113636 0.02 -0.385795 39 5 1111 136 60 60 0 0 GG 13.828901 46 0 1265 0 KEEP - Cux1 NO AID_2 chr5 137546978 137546978 G A exonic Serpine1 synonymous SNV NM_008871:c.C196T:p.L66L exonic Serpine1 synonymous SNV uc009abn.2:c.C196T:p.L66L exonic ENSMUSG00000037411 synonymous SNV ENSMUST00000041388:c.C196T:p.L66L 5qG2 NA NA chr5 137546978 CCAxCAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 114 0 0 19.817701 0.196078 0.02 1.150169 41 10 1186 260 60 60 0 0 GG 12.333192 41 0 1161 0 KEEP - Serpine1 YES AID_2 chr5 137904600 137904600 T A exonic Zan nonsynonymous SNV NM_011741:c.A3544T:p.S1182C exonic Zan nonsynonymous SNV uc012eey.1:c.A3544T:p.S1182C exonic ENSMUSG00000079173 nonsynonymous SNV ENSMUST00000164178:c.A3544T:p.S1182C 5qG2 NA NA chr5 137904600 GACxTGG T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 125 0 0 13.543932 0.127273 0.02 1.106316 48 7 1363 193 60 60 0 0 TT 17.1455 57 0 1598 0 KEEP - Zan NO AID_2 chr5 140593267 140593267 A T exonic Mad1l1 nonsynonymous SNV NM_010752:c.T1429A:p.L477M exonic Mad1l1 nonsynonymous SNV uc009ahj.1:c.T1429A:p.L477M exonic ENSMUSG00000029554 nonsynonymous SNV ENSMUST00000100508:c.T160A:p.L54M 5qG2 NA NA chr5 140593267 TCAxCTC A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 193 2 0 8.349853 0.061728 0.02 0.976235 76 5 2090 141 60 60 0 0 AA 22.551321 75 0 2016 0 KEEP - Mad1l1 NO AID_2 chr5 143666882 143666882 C T intronic Actb NA NA intronic Actb NA NA intronic ENSMUSG00000029580 NA NA 5qG2 "Score=0.941418;Name=No.63423,chr16:37882621" NA chr5 143666882 AAGxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999998 86 0 0 19.734911 0.225 0.02 -0.359555 31 9 894 247 60 60 0 0 CC 9.903771 33 0 886 0 KEEP - Actb YES AID_2 chr5 143667100 143667100 C T exonic Actb nonsynonymous SNV NM_007393:c.G179A:p.S60N exonic Actb nonsynonymous SNV uc009ajk.1:c.G179A:p.S60N exonic ENSMUSG00000029580 nonsynonymous SNV ENSMUST00000171419:c.G179A:p.S60N 5qG2 "Score=0.941418;Name=No.63423,chr16:37882621" NA chr5 143667100 TTGxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 214 0 0 57.762914 0.255102 0.02 0.934071 73 25 2133 700 60 60 0 0 CC 24.047544 80 0 2192 0 KEEP - Actb YES AID_2 chr5 143667219 143667219 C T intronic Actb NA NA intronic Actb NA NA intronic ENSMUSG00000029580 NA NA 5qG2 "Score=0.941418;Name=No.63423,chr16:37882621" NA chr5 143667219 CCAxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 233 3 0 23.816024 0.122449 0.02 0.925352 86 12 2479 339 60 60 0 0 CC 28.270387 94 0 2606 0 KEEP - Actb YES AID_2 chr5 146133464 146133464 T G exonic Cyp3a57 nonsynonymous SNV NM_001100180:c.T742G:p.F248V exonic Cyp3a57 nonsynonymous SNV uc009amu.1:c.T742G:p.F248V exonic ENSMUSG00000070419 nonsynonymous SNV ENSMUST00000079268:c.T742G:p.F248V 5qG2 NA NA chr5 146133464 AACxTTT T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 157 0 0 72.343428 0.407407 0.02 0.985135 48 33 1391 804 60 60 0 0 TT 16.543832 55 0 1541 0 KEEP + Cyp3a57 NO AID_2 chr5 146810108 146810108 C T exonic Cyp3a25 synonymous SNV NM_019792:c.G273A:p.K91K exonic Cyp3a25 synonymous SNV uc009amz.2:c.G273A:p.K91K exonic ENSMUSG00000029630 synonymous SNV ENSMUST00000068317:c.G273A:p.K91K 5qG3 "Score=0.948135;Name=No.91048,chr5:146880716" NA chr5 146810108 AATxTTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 228 2 0 8.080978 0.05 0.02 0.818144 95 5 2843 143 60 23 0 0 CC 18.38431 71 1 2058 28 KEEP - Cyp3a25 YES AID_2 chr5 147845128 147845128 G A intronic Lnx2 NA NA intronic Lnx2 NA NA intronic ENSMUSG00000016520 NA NA 5qG3 NA NA chr5 147845128 TGAxAAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.610258 0.612407 0.99649 53 0 0 8.492354 0.148148 0.02 -0.236812 23 4 691 115 60 60 0 0 GG 4.512656 15 0 434 0 KEEP - Lnx2 YES AID_2 chr5 14911322 14911322 C A intronic Gm9758 NA NA intronic Gm9758 NA NA intronic ENSMUSG00000033219 NA NA 5qA1 "Score=0.976005;Name=No.90292,chr5:14924346" NA chr5 14911322 GACxGAA C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 758 12 216 32.361006 0.067138 0.02 6.246024 264 19 7534 535 57 40 0 0 CC 70.928626 236 0 6351 0 KEEP - Gm9758 NO AID_2 chr5 15126151 15126151 C A exonic Speer4d nonsynonymous SNV NM_025759:c.C55A:p.Q19K exonic Speer4d nonsynonymous SNV uc008wmr.1:c.C55A:p.Q19K exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000095006:c.C55A:p.Q19K 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15126151 AAGxAGT C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1964 14 579 48.296104 0.046617 0.02 16.206509 634 31 18466 878 60 34 0 0 CC 253.847234 844 0 23693 0 KEEP + Speer4d NO AID_2 chr5 15128347 15128347 A T exonic Speer4d nonsynonymous SNV NM_025759:c.A401T:p.D134V exonic Speer4d nonsynonymous SNV uc008wmr.1:c.A401T:p.D134V exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000119100:c.A245T:p.D82V 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15128347 CTGxTTG A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 2000 53 519 27.564603 0.033613 0.02 14.693229 575 20 15852 559 60 57 0 0 AA 280.354809 933 0 25162 0 KEEP + Speer4d NO AID_2 chr5 26402123 26402123 G A intronic Gm21671 NA NA intergenic "Speer4a(dist=36078),Gm10471(dist=6589)" NA NA intergenic "ENSMUSG00000073117(dist=17002),ENSMUSG00000073116(dist=6589)" NA NA 5qB1 "Score=0.958652;Name=No.90497,chr5:26366487" NA chr5 26402123 AGCxGGG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 476 6 28 38.67149 0.106952 0.02 3.680592 167 20 4540 567 60 60 0 0 GG 70.637566 235 0 6141 0 KEEP NA Gm21671 YES AID_2 chr5 26445097 26445097 G T intronic Gm10220 NA NA intronic Gm10220 NA NA intronic ENSMUSG00000067698 NA NA 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445097 AAAxTAG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 999 7 293 22.789313 0.054152 0.02 5.480949 262 15 7679 409 57 35 0 0 GG 147.071561 489 0 13858 0 KEEP - Gm10220 NO AID_2 chr5 26445122 26445122 T A intronic Gm10220 NA NA intronic Gm10220 NA NA intronic ENSMUSG00000067698 NA NA 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445122 GGTxGGC T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1613 11 498 26.576697 0.044706 0.02 8.872791 406 19 11369 511 57 35 0 0 TT 221.974617 741 1 20244 7 KEEP - Gm10220 NO AID_2 chr5 36837878 36837878 C G exonic Tbc1d14 nonsynonymous SNV NM_001113364:c.G965C:p.R322P exonic Tbc1d14 nonsynonymous SNV uc008xes.2:c.G965C:p.R322P exonic ENSMUSG00000029192 nonsynonymous SNV ENSMUST00000087550:c.G1535C:p.R512P 5qB3 NA NA chr5 36837878 ATGxGGC C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 74 2 0 29.005117 0.354839 0.02 -0.271387 20 11 524 325 60 60 0 0 CC 8.714919 29 0 732 0 KEEP - Tbc1d14 NO AID_2 chr5 58111576 58111576 C T exonic Pcdh7 synonymous SNV NM_001122758:c.C1233T:p.N411N exonic Pcdh7 synonymous SNV uc008xlt.2:c.C1233T:p.N411N exonic ENSMUSG00000029108 synonymous SNV ENSMUST00000068110:c.C1233T:p.N411N 5qC1 NA NA chr5 58111576 CAAxGTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 100 0 0 24.588265 0.244444 0.02 -0.394222 34 11 828 302 60 60 0 0 CC 15.010966 50 0 1148 0 KEEP + Pcdh7 YES AID_2 chr5 58112634 58112634 C T exonic Pcdh7 nonsynonymous SNV NM_001122758:c.C2291T:p.A764V exonic Pcdh7 nonsynonymous SNV uc008xlt.2:c.C2291T:p.A764V exonic ENSMUSG00000029108 nonsynonymous SNV ENSMUST00000068110:c.C2291T:p.A764V 5qC1 NA NA chr5 58112634 TAGxTAC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 154 2 0 91.23999 0.492754 0.02 1.170938 35 34 1028 958 60 60 0 0 CC 18.650512 62 0 1762 0 KEEP + Pcdh7 YES AID_2 chr5 91503837 91503837 C T intronic Ereg NA NA intronic Ereg NA NA intronic ENSMUSG00000029377 NA NA 5qE1 NA NA chr5 91503837 AAGxCCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 223 2 0 10.034594 0.0625 0.02 0.845194 90 6 2566 169 60 60 0 0 CC 22.775033 76 0 2015 0 KEEP + Ereg YES AID_2 chr6 102886976 102886976 C G intergenic "Cntn3(dist=472315),Chl1(dist=573894)" NA NA intergenic "Cntn3(dist=472315),Chl1(dist=573894)" NA NA intergenic "ENSMUSG00000089288(dist=74507),ENSMUSG00000030077(dist=573894)" NA NA 6qD3 "Score=0.984827;Name=No.95761,chrX:12869794" NA chr6 102886976 TTCxCAA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 613 10 0 120.333996 0.246032 0.02 6.65981 190 62 5530 1518 60 60 0 0 CC 74.565544 248 0 6889 0 KEEP NA Cntn3 NO AID_2 chr6 108611105 108611105 G A intronic Bhlhe40 NA NA intronic Bhlhe40 NA NA intronic ENSMUSG00000030103 NA NA 6qE2 NA NA chr6 108611105 GCAxCTA G A 2-AID-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.418335 0.423478 0.987855 48 0 0 20.555561 0.380952 0.02 -0.184166 13 8 377 228 60 60 0 0 GG 6.892361 23 0 630 0 KEEP + Bhlhe40 YES AID_2 chr6 108611109 108611109 G A intronic Bhlhe40 NA NA intronic Bhlhe40 NA NA intronic ENSMUSG00000030103 NA NA 6qE2 NA NA chr6 108611109 CTAxTAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.38736 0.387407 0.999879 46 0 0 17.516031 0.35 0.02 -0.175387 13 7 372 198 60 60 0 0 GG 6.617018 22 0 611 0 KEEP + Bhlhe40 YES AID_2 chr6 108611523 108611523 C T exonic Bhlhe40 synonymous SNV NM_011498:c.C175T:p.L59L exonic Bhlhe40 synonymous SNV uc009ddn.1:c.C175T:p.L59L exonic ENSMUSG00000030103 synonymous SNV ENSMUST00000032194:c.C175T:p.L59L 6qE2 NA NA chr6 108611523 CGGxTGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 369 8 0 8.795074 0.047244 0.02 2.276603 121 6 3579 164 60 60 0 0 CC 48.701671 162 0 4523 0 KEEP + Bhlhe40 YES AID_2 chr6 108611595 108611595 C G exonic Bhlhe40 nonsynonymous SNV NM_011498:c.C247G:p.L83V exonic Bhlhe40 nonsynonymous SNV uc009ddn.1:c.C247G:p.L83V exonic ENSMUSG00000030103 nonsynonymous SNV ENSMUST00000032194:c.C247G:p.L83V 6qE2 NA NA chr6 108611595 CATxTCA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 285 6 0 16.70124 0.078261 0.02 2.874668 106 9 3159 261 60 60 0 0 CC 36.397922 121 0 3454 0 KEEP + Bhlhe40 NO AID_2 chr6 115974931 115974931 C A exonic Tmcc1 synonymous SNV NM_177412:c.G1524T:p.L508L exonic Tmcc1 synonymous SNV uc009djo.2:c.G564T:p.L188L exonic ENSMUSG00000030126 synonymous SNV ENSMUST00000172510:c.G177T:p.L59L 6qE3 NA NA chr6 115974931 ATTxAGC C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 107 9 0 49.799417 0.350877 0.02 1.177778 37 20 1107 563 60 60 0 0 CC 11.726571 39 0 1104 0 KEEP - Tmcc1 NO AID_2 chr6 122511174 122511174 C T exonic Aicda nonsynonymous SNV NM_009645:c.C272T:p.A91V exonic Aicda nonsynonymous SNV uc009dpj.1:c.C272T:p.A91V exonic ENSMUSG00000040627 nonsynonymous SNV ENSMUST00000043301:c.C272T:p.A91V 6qF1 NA NA chr6 122511174 GTGxCCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 5 0 10.257466 0.044586 0.02 3.613746 150 7 4251 193 60 60 0 0 CC 25.247997 84 0 2294 0 KEEP + Aicda YES AID_2 chr6 124484474 124484474 T G exonic C1s nonsynonymous SNV NM_001097617:c.A907C:p.K303Q exonic C1s nonsynonymous SNV uc009drb.1:c.A907C:p.K303Q exonic ENSMUSG00000038521 nonsynonymous SNV ENSMUST00000077416:c.A907C:p.K303Q 6qF2 "Score=0.944833;Name=No.94063,chr6:124552567" NA chr6 124484474 TTTxTTT T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 115 0 0 15.741088 0.194444 0.02 -0.315722 29 7 838 201 60 60 0 0 TT 15.942539 53 0 1489 0 KEEP - C1s NO AID_2 chr6 125115251 125115251 G C intronic Gapdh NA NA intronic Gapdh NA NA intronic ENSMUSG00000057666 NA NA 6qF3 NA NA chr6 125115251 CCTxCGT G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999999 89 0 0 10.702993 0.128205 0.02 -0.342069 34 5 1028 148 60 60 0 0 GG 10.528347 35 0 999 0 KEEP - Gapdh NO AID_2 chr6 127100605 127100605 G A exonic Ccnd2 synonymous SNV NM_009829:c.C187T:p.L63L exonic Ccnd2 synonymous SNV uc009dvr.1:c.C187T:p.L63L exonic ENSMUSG00000000184 synonymous SNV ENSMUST00000000188:c.C187T:p.L63L 6qF3 NA NA chr6 127100605 CTAxCAT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 162 0 0 20.937332 0.166667 0.02 1.169009 50 10 1476 279 60 60 0 0 GG 20.14229 67 0 1886 0 KEEP - Ccnd2 YES AID_2 chr6 128193384 128193384 T G intronic Tead4 NA NA intronic Tead4 NA NA intronic ENSMUSG00000030353 NA NA 6qF3 NA NA chr6 128193384 GACxTAC T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 199 2 0 29.620017 0.185185 0.02 0.985515 66 15 1880 393 60 60 0 0 TT 22.257047 74 0 2060 0 KEEP - Tead4 NO AID_2 chr6 129130728 129130728 G A exonic Clec2d nonsynonymous SNV NM_053109:c.G30A:p.M10I exonic Clec2d nonsynonymous SNV uc009efe.2:c.G30A:p.M10I exonic ENSMUSG00000030157 nonsynonymous SNV ENSMUST00000032260:c.G30A:p.M10I 6qF3 NA NA chr6 129130728 TATxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 391 2 0 69.146138 0.221477 0.02 3.477582 116 33 3417 876 60 60 0 0 GG 48.410487 161 0 4546 0 KEEP + Clec2d YES AID_2 chr6 136752602 136752602 C T exonic Hist4h4 nonsynonymous SNV NM_175652:c.G299A:p.G100D exonic Hist4h4 nonsynonymous SNV uc009emd.1:c.G299A:p.G100D exonic ENSMUSG00000068851 nonsynonymous SNV ENSMUST00000090778:c.G299A:p.G100D 6qG1 NA NA chr6 136752602 AAGxCGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 201 0 0 12.285356 0.097222 0.02 1.055728 65 7 1809 189 60 60 0 0 CC 24.599494 82 0 2217 0 KEEP - Hist4h4 YES AID_2 chr6 137453916 137453916 C T exonic Eps8 nonsynonymous SNV NM_001271589:c.G778A:p.V260I exonic Eps8 nonsynonymous SNV uc009emz.1:c.G778A:p.V260I exonic ENSMUSG00000015766 nonsynonymous SNV ENSMUST00000100841:c.G1558A:p.V520I 6qG1 NA NA chr6 137453916 CTAxTTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 338 2 0 9.275401 0.04878 0.02 2.302973 117 6 3403 168 60 60 0 0 CC 42.709068 142 0 3957 0 KEEP - Eps8 YES AID_2 chr6 147482554 147482554 C T exonic Ccdc91 nonsynonymous SNV NM_025911:c.C113T:p.S38F exonic Ccdc91 nonsynonymous SNV uc009esz.1:c.C23T:p.S8F exonic ENSMUSG00000030301 nonsynonymous SNV ENSMUST00000111614:c.C23T:p.S8F 6qG3 NA NA chr6 147482554 TATxCGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 494 2 0 17.177281 0.053659 0.02 4.967055 194 11 5694 305 60 60 0 0 CC 56.551634 188 0 5332 0 KEEP + Ccdc91 YES AID_2 chr6 24715724 24715724 A T exonic Hyal4 nonsynonymous SNV NM_029848:c.A1076T:p.N359I exonic Hyal4 nonsynonymous SNV uc009bbx.1:c.A1076T:p.N359I exonic ENSMUSG00000029680 nonsynonymous SNV ENSMUST00000031691:c.A1076T:p.N359I 6qA3.1 NA NA chr6 24715724 TGAxTTC A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800148 0.800245 0.999879 70 2 0 7.61199 0.114286 0.02 -0.306941 31 4 890 111 60 60 0 0 AA 6.616091 22 0 596 0 KEEP + Hyal4 NO AID_2 chr6 29383596 29383596 G T exonic Flnc nonsynonymous SNV NM_001081185:c.G138T:p.W46C exonic Flnc nonsynonymous SNV uc009bdm.1:c.G138T:p.W46C exonic ENSMUSG00000068699 nonsynonymous SNV ENSMUST00000065090:c.G138T:p.W46C 6qA3.3 NA NA chr6 29383596 GTGxTGC G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 152 0 0 23.854389 0.196721 0.02 1.162651 49 12 1368 312 60 60 0 0 GG 18.556404 65 1 1722 8 KEEP + Flnc NO AID_2 chr6 30610834 30610834 C T intronic Cep41 NA NA intronic Tsga14 NA NA intronic ENSMUSG00000029790 NA NA 6qA3.3 NA NA chr6 30610834 GAAxGAT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 236 0 0 96.111028 0.408602 0.02 0.969353 55 38 1483 1053 60 60 0 0 CC 28.259172 94 0 2447 0 KEEP - Cep41 YES AID_2 chr6 42300476 42300476 G A splicing Zyx(NM_011777:exon2:c.208+1G>A) NA NA splicing "Zyx(uc009bqy.1:exon2:c.208+1G>A,uc009bqz.1:exon2:c.208+1G>A,uc009bra.1:exon2:c.208+1G>A,uc009brb.1:exon2:c.208+1G>A)" NA NA splicing "ENSMUSG00000029860(ENSMUST00000070635:exon2:c.208+1G>A,ENSMUST00000031890:exon2:c.208+1G>A,ENSMUST00000168642:exon2:c.208+1G>A,ENSMUST00000164375:exon2:c.208+1G>A)" NA NA 6qB2.1 NA NA chr6 42300476 AAGxTAT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612365 0.612407 0.999931 65 1 0 10.457663 0.217391 0.02 -0.236763 18 5 512 133 60 60 0 0 GG 7.518385 25 0 677 0 KEEP - Zyx YES AID_2 chr6 42301136 42301136 C T exonic Zyx nonsynonymous SNV NM_011777:c.C400T:p.L134F exonic Zyx nonsynonymous SNV uc009bqy.1:c.C400T:p.L134F exonic ENSMUSG00000029860 nonsynonymous SNV ENSMUST00000031890:c.C400T:p.L134F 6qB2.1 NA NA chr6 42301136 CAGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 110 2 0 24.60383 0.215686 0.02 1.247974 40 11 1154 309 60 60 0 0 CC 16.53896 55 0 1545 0 KEEP + Zyx YES AID_2 chr6 4455843 4455843 C T exonic Col1a2 nonsynonymous SNV NM_007743:c.C4T:p.L2F exonic Col1a2 nonsynonymous SNV uc009avl.1:c.C4T:p.L2F exonic ENSMUSG00000029661 nonsynonymous SNV ENSMUST00000031668:c.C4T:p.L2F 6qA1 NA NA chr6 4455843 ATGxTCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612365 0.612407 0.999931 63 0 0 10.575778 0.185185 0.02 -0.236233 22 5 619 138 60 60 0 0 CC 7.519876 25 0 700 0 KEEP + Col1a2 YES AID_2 chr6 66986811 66986811 C T exonic Gadd45a nonsynonymous SNV NM_007836:c.G245A:p.C82Y exonic Gadd45a nonsynonymous SNV uc009cfc.1:c.G245A:p.C82Y exonic ENSMUSG00000036390 nonsynonymous SNV ENSMUST00000043098:c.G245A:p.C82Y 6qC1 NA NA chr6 66986811 CAGxAGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 107 0 0 31.809843 0.28 0.02 1.151352 36 14 1012 380 60 60 0 0 CC 12.933438 43 0 1193 0 KEEP - Gadd45a YES AID_2 chr6 71862596 71862596 G A intronic Polr1a NA NA exonic Polr1a stopgain SNV uc009chw.1:c.G72A:p.W24X exonic ENSMUSG00000049553 stopgain SNV ENSMUST00000070879:c.G72A:p.W24X 6qC1 NA NA chr6 71862596 GTGxCAT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 91 2 0 20.234689 0.225 0.02 -0.350797 31 9 901 252 60 60 0 0 GG 10.518887 35 0 972 0 KEEP + Polr1a YES AID_2 chr6 78166771 78166771 C A intergenic "Ctnna2(dist=237110),Reg3b(dist=154108)" NA NA intergenic "Ctnna2(dist=237110),Reg3b(dist=154108)" NA NA exonic ENSMUSG00000063692 synonymous SNV ENSMUST00000077886:c.C900A:p.A300A 6qC3 "Score=0.964806;Name=No.93953,chr6:116499630" NA chr6 78166771 AGCxAAT C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 90 1 0 28.721975 0.285714 0.02 -0.367912 30 12 850 339 60 60 0 0 CC 12.625071 42 0 1158 0 KEEP NA Ctnna2 NO AID_2 chr6 82979953 82979953 C T UTR3 M1ap NA NA UTR3 D6Mm5e NA NA UTR3 ENSMUSG00000030041 NA NA 6qC3 NA NA chr6 82979953 CAGxCAT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 159 0 0 24.214377 0.171875 0.02 1.233615 53 11 1506 317 60 60 0 0 CC 18.644281 62 0 1712 0 KEEP + M1ap YES AID_2 chr6 82979954 82979954 C T UTR3 M1ap NA NA UTR3 D6Mm5e NA NA UTR3 ENSMUSG00000030041 NA NA 6qC3 NA NA chr6 82979954 AGCxATG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 156 0 0 22.486681 0.174603 0.02 1.1429 52 11 1530 299 60 60 0 0 CC 18.046896 60 0 1699 0 KEEP + M1ap YES AID_2 chr6 83176304 83176304 A T intergenic "Dctn1(dist=26192),Slc4a5(dist=11065)" NA NA intergenic "Dctn1(dist=26192),Slc4a5(dist=11065)" NA NA exonic ENSMUSG00000068323 nonsynonymous SNV ENSMUST00000113900:c.A191T:p.K64M 6qC3 NA NA chr6 83176304 GCAxGCC A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 91 0 0 7.095373 0.090909 0.02 -0.385843 40 4 1155 110 60 60 0 0 AA 8.422365 28 0 785 0 KEEP NA Dctn1 NO AID_2 chr6 86341845 86341845 T A intronic Pcyox1 NA NA intronic Pcyox1 NA NA intronic ENSMUSG00000029998 NA NA 6qD1 NA NA chr6 86341845 ACAxGCT T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 67 0 0 8.614905 0.166667 0.02 -0.210455 20 4 557 114 60 60 0 0 TT 11.12252 37 0 986 0 KEEP - Pcyox1 NO AID_2 chr6 88150731 88150731 C T exonic Gata2 nonsynonymous SNV NM_008090:c.C748T:p.P250S exonic Gata2 nonsynonymous SNV uc009cvc.2:c.C748T:p.P250S exonic ENSMUSG00000015053 nonsynonymous SNV ENSMUST00000015197:c.C748T:p.P250S 6qD1 NA NA chr6 88150731 TATxCCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 145 2 0 34.371592 0.217391 0.02 1.072819 54 15 1581 429 60 60 0 0 CC 18.048367 60 0 1701 0 KEEP + Gata2 YES AID_2 chr7 112532929 112532929 A C exonic Fam160a2 synonymous SNV NM_001242364:c.T1635G:p.T545T exonic Fam160a2 synonymous SNV uc009ixy.1:c.T1593G:p.T531T exonic ENSMUSG00000044465 synonymous SNV ENSMUST00000048079:c.T1593G:p.T531T 7qE3 NA NA chr7 112532929 GGAxGTT A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 80 0 0 9.862203 0.192308 0.02 -0.227909 21 5 596 130 60 60 0 0 AA 12.332617 41 0 1148 0 KEEP - Fam160a2 NO AID_2 chr7 125633717 125633717 G C exonic Itpripl2 nonsynonymous SNV NM_001033380:c.C1132G:p.L378V exonic Itpripl2 nonsynonymous SNV uc009jjx.1:c.C1132G:p.L378V exonic ENSMUSG00000073858 nonsynonymous SNV ENSMUST00000098091:c.C1132G:p.L378V 7qF2 NA NA chr7 125633717 GCAxCTG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 156 2 0 12.298398 0.1 0.02 1.267324 54 6 1568 179 60 60 0 0 GG 21.624762 72 0 1979 0 KEEP - Itpripl2 NO AID_2 chr7 125633737 125633737 C T exonic Itpripl2 nonsynonymous SNV NM_001033380:c.G1112A:p.C371Y exonic Itpripl2 nonsynonymous SNV uc009jjx.1:c.G1112A:p.C371Y exonic ENSMUSG00000073858 nonsynonymous SNV ENSMUST00000098091:c.G1112A:p.C371Y 7qF2 NA NA chr7 125633737 TAGxAGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 153 2 0 38.226832 0.288136 0.02 1.080047 42 17 1219 455 60 60 0 0 CC 21.653703 72 0 2002 0 KEEP - Itpripl2 YES AID_2 chr7 125633946 125633946 G A exonic Itpripl2 synonymous SNV NM_001033380:c.C903T:p.C301C exonic Itpripl2 synonymous SNV uc009jjx.1:c.C903T:p.C301C exonic ENSMUSG00000073858 synonymous SNV ENSMUST00000098091:c.C903T:p.C301C 7qF2 NA NA chr7 125633946 GCGxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 42 0 0 13.430484 0.26087 0.02 -0.201694 17 6 485 163 60 60 0 0 GG 5.112853 17 0 467 0 KEEP - Itpripl2 YES AID_2 chr7 125633997 125633997 C T exonic Itpripl2 synonymous SNV NM_001033380:c.G852A:p.E284E exonic Itpripl2 synonymous SNV uc009jjx.1:c.G852A:p.E284E exonic ENSMUSG00000073858 synonymous SNV ENSMUST00000098091:c.G852A:p.E284E 7qF2 NA NA chr7 125633997 CTGxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 53 0 0 8.038001 0.16 0.02 -0.21925 21 4 615 109 60 60 0 0 CC 6.915349 23 0 625 0 KEEP - Itpripl2 YES AID_2 chr7 125634107 125634107 C T exonic Itpripl2 nonsynonymous SNV NM_001033380:c.G742A:p.A248T exonic Itpripl2 nonsynonymous SNV uc009jjx.1:c.G742A:p.A248T exonic ENSMUSG00000073858 nonsynonymous SNV ENSMUST00000098091:c.G742A:p.A248T 7qF2 NA NA chr7 125634107 TAGxTGA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 56 0 0 10.802115 0.25 0.02 -0.175381 15 5 443 133 60 60 0 0 CC 8.120208 27 0 747 0 KEEP - Itpripl2 YES AID_2 chr7 125634145 125634145 C T exonic Itpripl2 nonsynonymous SNV NM_001033380:c.G704A:p.G235D exonic Itpripl2 nonsynonymous SNV uc009jjx.1:c.G704A:p.G235D exonic ENSMUSG00000073858 nonsynonymous SNV ENSMUST00000098091:c.G704A:p.G235D 7qF2 NA NA chr7 125634145 AAGxCTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322803 0.322807 0.999988 53 0 0 17.415407 0.388889 0.02 -0.157829 11 7 313 193 60 60 0 0 CC 8.093025 27 0 715 0 KEEP - Itpripl2 YES AID_2 chr7 125634451 125634451 G A exonic Itpripl2 nonsynonymous SNV NM_001033380:c.C398T:p.A133V exonic Itpripl2 nonsynonymous SNV uc009jjx.1:c.C398T:p.A133V exonic ENSMUSG00000073858 nonsynonymous SNV ENSMUST00000098091:c.C398T:p.A133V 7qF2 NA NA chr7 125634451 CCAxCTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 116 2 0 7.996289 0.133333 0.02 -0.377113 26 4 771 112 60 60 0 0 GG 16.197263 54 0 1484 0 KEEP - Itpripl2 YES AID_2 chr7 126596450 126596450 T A exonic Gp2 nonsynonymous SNV NM_025989:c.A554T:p.K185M exonic Gp2 nonsynonymous SNV uc009jkz.1:c.A605T:p.K202M exonic ENSMUSG00000030954 nonsynonymous SNV ENSMUST00000033255:c.A554T:p.K185M 7qF2 NA NA chr7 126596450 TTCxTGG T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 48 0 0 12.022301 0.357143 0.02 -0.122766 9 5 257 136 60 60 0 0 TT 6.859126 27 1 731 11 KEEP - Gp2 NO AID_2 chr7 129324823 129324823 A G exonic Ern2 nonsynonymous SNV NM_012016:c.T467C:p.L156P exonic Ern2 nonsynonymous SNV uc009joq.1:c.T467C:p.L156P exonic ENSMUSG00000030866 nonsynonymous SNV ENSMUST00000033153:c.T467C:p.L156P 7qF3 NA NA chr7 129324823 AAAxGTT A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 183 1 0 9.33761 0.073529 0.02 1.295837 63 5 1816 147 60 60 0 0 AA 22.859769 76 0 2115 0 KEEP - Ern2 NO AID_2 chr7 13002479 13002479 A G exonic Zfp551 synonymous SNV NM_001033820:c.T351C:p.T117T exonic "Zfp551,Znf551" synonymous SNV uc012eyz.1:c.T75C:p.T25T exonic ENSMUSG00000034071 synonymous SNV ENSMUST00000080348:c.T351C:p.T117T 7qA1 NA NA chr7 13002479 ATGxGTC A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043461 0.043787 0.99257 18 0 0 8.054864 0.428571 0.02 -0.061391 4 3 116 87 60 60 0 0 AA 2.402846 8 0 211 0 KEEP - Zfp551 NO AID_2 chr7 133768818 133768818 G A intronic Nupr1 NA NA intronic Nupr1 NA NA intronic ENSMUSG00000030717 NA NA 7qF3 NA NA chr7 133768818 GGAxCTA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 99 2 0 46.690129 0.418605 0.02 -0.37708 25 18 725 508 60 60 0 0 GG 10.526111 35 0 978 0 KEEP - Nupr1 YES AID_2 chr7 17736818 17736818 T G intronic Ceacam3 NA NA intronic NM_054059 NA NA intronic ENSMUSG00000053228 NA NA 7qA2 NA NA chr7 17736818 AGCxGAG T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 189 0 0 35.943669 0.24 0.02 1.127185 57 18 1634 453 60 60 0 0 TT 26.770138 89 0 2484 0 KEEP + Ceacam3 NO AID_2 chr7 17795778 17795778 T A exonic Psg29 nonsynonymous SNV NM_054064:c.T863A:p.L288H exonic Psg29 nonsynonymous SNV uc012fam.1:c.T863A:p.L288H exonic ENSMUSG00000023159 nonsynonymous SNV ENSMUST00000075934:c.T863A:p.L288H 7qA2 NA NA chr7 17795778 TTCxTCT T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 152 3 0 39.925874 0.288136 0.02 1.177813 42 17 1215 472 60 60 0 0 TT 20.454152 68 0 1904 0 KEEP + Psg29 NO AID_2 chr7 28914926 28914926 C A intronic 9530053A07Rik NA NA intronic 9530053A07Rik NA NA intronic ENSMUSG00000078776 NA NA 7qA3 NA NA chr7 28914926 GTCxTGG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 122 0 0 53.868924 0.366667 0.02 1.169037 38 22 1122 605 60 60 0 0 CC 13.837915 46 0 1314 0 KEEP + 9530053A07Rik NO AID_2 chr7 29114103 29114103 T G intronic Supt5 NA NA UTR5 Supt5h NA NA intronic ENSMUSG00000003435 NA NA 7qA3 NA NA chr7 29114103 AACxTAT T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 205 0 0 13.14774 0.093333 0.02 1.037484 68 7 1955 199 60 60 0 0 TT 30.369158 101 0 2765 0 KEEP - Supt5 NO AID_2 chr7 49555882 49555882 C T exonic Vmn2r61 synonymous SNV NM_001105058:c.C2355T:p.F785F exonic Vmn2r61 synonymous SNV uc012fix.1:c.C2355T:p.F785F exonic ENSMUSG00000090967 synonymous SNV ENSMUST00000166131:c.C2355T:p.F785F 7qB3 "Score=0.902488;Name=No.101198,chr7:49092304" NA chr7 49555882 ATTxAGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 454 6 1 63.898976 0.1875 0.02 3.665188 130 30 3849 831 60 60 0 0 CC 71.296034 237 0 6817 0 KEEP + Vmn2r61 YES AID_2 chr7 52713927 52713927 C T exonic Ftl1 nonsynonymous SNV NM_010240:c.G353A:p.G118D exonic Ftl1 nonsynonymous SNV uc009gvf.1:c.G353A:p.G118D exonic ENSMUSG00000050708 nonsynonymous SNV ENSMUST00000094434:c.G353A:p.G118D 7qB4 NA NA chr7 52713927 GAAxCCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 104 11 10 34.32112 0.358974 0.02 -0.350771 25 14 713 387 60 60 0 0 CC 14.724532 49 0 1317 0 KEEP - Ftl1 YES AID_2 chr7 52713933 52713933 G A exonic Ftl1 nonsynonymous SNV NM_010240:c.C347T:p.A116V exonic Ftl1 nonsynonymous SNV uc009gvf.1:c.C347T:p.A116V exonic ENSMUSG00000050708 nonsynonymous SNV ENSMUST00000094434:c.C347T:p.A116V 7qB4 NA NA chr7 52713933 AGGxCAT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 111 11 10 7.339834 0.093023 0.02 -0.385122 39 4 1105 112 60 60 0 0 GG 14.73652 49 0 1348 0 KEEP - Ftl1 YES AID_2 chr7 52714074 52714074 C T intronic Ftl1 NA NA intronic Ftl1 NA NA intronic ENSMUSG00000050708 NA NA 7qB4 NA NA chr7 52714074 CAGxCAA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 89 0 0 57.88153 0.636364 0.02 -0.289075 12 21 350 573 60 60 0 0 CC 12.930955 43 0 1196 0 KEEP - Ftl1 YES AID_2 chr7 52714423 52714423 C T intronic Ftl1 NA NA intronic Ftl1 NA NA intronic ENSMUSG00000050708 NA NA 7qB4 NA NA chr7 52714423 ATGxTCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 451 4 0 262.788273 0.620915 0.02 3.744023 58 95 1688 2616 60 60 0 0 CC 61.826975 206 0 5648 0 KEEP - Ftl1 YES AID_2 chr7 53317214 53317214 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53317214 GGGxACA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 131 0 0 58.553079 0.44898 0.02 1.212879 27 22 790 627 60 70 0 0 GG 18.342384 61 0 1708 0 KEEP + Nomo1 YES AID_2 chr7 53318441 53318441 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53318441 ATGxGTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.999859 46 2 0 30.233944 0.52381 0.02 -0.210471 10 11 289 313 60 60 0 0 GG 5.414035 18 0 498 0 KEEP + Nomo1 YES AID_2 chr7 53323993 53323993 C T intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53323993 TCCxTTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139529 0.139832 0.997832 30 0 0 13.345348 0.416667 0.02 -0.105245 7 5 206 145 60 60 0 0 CC 4.813261 16 0 459 0 KEEP + Nomo1 YES AID_2 chr7 53362372 53362372 T A exonic Abcc8 synonymous SNV NM_011510:c.A4278T:p.S1426S exonic Abcc8 synonymous SNV uc009gyd.1:c.A2253T:p.S751S exonic ENSMUSG00000040136 synonymous SNV ENSMUST00000033123:c.A4278T:p.S1426S 7qB4 NA NA chr7 53362372 GCGxGAA T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999998 71 2 0 11.767944 0.227273 0.02 -0.201585 17 5 467 145 60 60 0 0 TT 10.225011 34 0 917 0 KEEP - Abcc8 NO AID_2 chr7 53379241 53379241 T C intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53379241 CAGxCCC T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 80 0 0 34.714984 0.40625 0.02 -0.289392 19 13 529 379 60 60 0 0 TT 10.526153 35 0 953 0 KEEP - Abcc8 NO AID_2 chr7 53435158 53435158 G A intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53435158 GCTxGGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036511 0.036766 0.993072 20 0 0 7.524253 0.5 0.02 -0.0526 3 3 81 79 60 60 0 0 GG 3.308892 11 0 311 0 KEEP - Abcc8 YES AID_2 chr7 53521368 53521368 A G intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53521368 TGAxAGG A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043541 0.043787 0.994391 24 0 0 12.449289 0.666667 0.02 -0.061397 2 4 58 122 60 60 0 0 AA 3.910533 13 0 367 0 KEEP + Otog NO AID_2 chr7 53543464 53543464 C T exonic Otog synonymous SNV NM_013624:c.C5226T:p.I1742I exonic Otog synonymous SNV uc009gyk.2:c.C5226T:p.I1742I exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000164538:c.C5226T:p.I1742I 7qB4 NA NA chr7 53543464 CATxGAC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 50 2 0 23.625604 0.45 0.02 -0.175128 11 9 294 253 60 60 0 0 CC 5.407814 18 0 455 0 KEEP + Otog YES AID_2 chr7 53553863 53553863 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553863 ATGxATC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 70 0 0 26.186368 0.37931 0.02 -0.298128 18 11 510 293 60 60 0 0 CC 8.420207 28 0 768 0 KEEP + Otog YES AID_2 chr7 53553865 53553865 T C intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553865 GCAxCCA T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 72 0 0 28.188992 0.37931 0.02 -0.298141 18 11 489 313 60 60 0 0 TT 8.72042 29 0 784 0 KEEP + Otog NO AID_2 chr7 53553867 53553867 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553867 ATCxACC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 72 0 0 27.587224 0.37931 0.02 -0.298162 18 11 516 307 60 60 0 0 CC 9.023407 30 0 837 0 KEEP + Otog YES AID_2 chr7 53633192 53633192 C G intronic Myod1 NA NA intronic Myod1 NA NA intronic ENSMUSG00000009471 NA NA 7qB4 NA NA chr7 53633192 GTGxGTA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552849 0.552887 0.999931 63 0 0 17.206385 0.28 0.02 -0.219059 18 7 439 203 60 60 0 0 CC 5.031958 24 1 567 20 KEEP + Myod1 NO AID_2 chr7 53890970 53890970 A G intronic Sergef NA NA intronic Sergef NA NA intronic ENSMUSG00000030839 NA NA 7qB4 NA NA chr7 53890970 TCAxCAT A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.02392 0.024074 0.993634 17 0 0 6.788006 0.75 0.02 -0.043276 1 3 28 64 60 60 0 0 AA 3.607242 12 0 316 0 KEEP - Sergef NO AID_2 chr7 53997787 53997787 G T intronic Saa1 NA NA intronic Saa1 NA NA intronic ENSMUSG00000074115 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:54006945" NA chr7 53997787 GGGxCCT G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 48 0 0 21.961935 0.571429 0.02 -0.122773 6 8 175 223 60 60 0 0 GG 6.918436 23 0 646 0 KEEP - Saa1 NO AID_2 chr7 54008756 54008756 T A intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008756 TTTxGGG T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 57 0 0 15.301292 0.304348 0.02 -0.201672 16 7 454 181 60 60 0 0 TT 9.023745 30 0 836 0 KEEP + Saa2 NO AID_2 chr7 54008763 54008763 T C intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008763 TCAxGTT T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 60 0 0 16.403187 0.28 0.02 -0.219211 18 7 491 195 60 60 0 0 TT 9.006226 30 0 788 0 KEEP + Saa2 NO AID_2 chr7 54009461 54009461 A C exonic Saa2 synonymous SNV NM_011314:c.A351C:p.G117G exonic Saa2 synonymous SNV uc009gzb.2:c.A351C:p.G117G exonic ENSMUSG00000057465 synonymous SNV ENSMUST00000075982:c.A351C:p.G117G 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54009461 TGGxCTG A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 94 6 0 11.255109 0.2 0.02 -0.227968 20 5 549 143 60 60 0 0 AA 14.435475 48 0 1309 0 KEEP + Saa2 NO AID_2 chr7 54028653 54028653 A G intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54028653 AATxCCA A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 114 4 0 43.963609 0.386364 0.02 -0.385818 27 17 728 486 60 60 0 0 AA 16.527518 55 0 1431 0 KEEP - Hps5 NO AID_2 chr7 54031109 54031109 T C intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54031109 CAGxGAC T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 84 0 0 32.20724 0.40625 0.02 -0.280506 19 13 522 354 60 60 0 0 TT 12.931196 43 0 1155 0 KEEP - Hps5 NO AID_2 chr7 54032439 54032439 T C intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54032439 CAGxTTA T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 54 1 0 8.663907 0.210526 0.02 -0.166601 15 4 421 110 60 60 0 0 TT 8.420536 28 0 765 0 KEEP - Hps5 NO AID_2 chr7 54070838 54070838 A G intronic Gtf2h1 NA NA intronic Gtf2h1 NA NA intronic ENSMUSG00000006599 NA NA 7qB4 NA NA chr7 54070838 CTCxGGT A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 94 0 0 20.2961 0.36 0.02 -0.236743 16 9 466 231 60 60 0 0 AA 14.125583 47 0 1302 0 KEEP + Gtf2h1 NO AID_2 chr7 54441179 54441179 G T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.C863A:p.P288H 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441179 TCAxGTG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 317 25 5 39.670756 0.136054 0.02 3.577235 127 20 3740 555 60 60 0 0 GG 29.167216 97 0 2750 0 KEEP - Mrgpra6 NO AID_2 chr7 54441206 54441206 C T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.G836A:p.S279N 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441206 GCAxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 324 30 6 49.488293 0.147239 0.02 3.508913 139 24 4022 676 60 60 0 0 CC 25.567853 85 0 2393 0 KEEP - Mrgpra6 YES AID_2 chr7 54441228 54441228 T A UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.A814T:p.T272S 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441228 GGGxCTG T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 325 34 5 10.510251 0.042683 0.02 3.41968 157 7 4373 197 60 37 0 0 TT 24.962177 83 0 2262 0 KEEP - Mrgpra6 NO AID_2 chr7 54681932 54681932 T A exonic Mrgpra2a nonsynonymous SNV NM_001172588:c.A947T:p.E316V exonic Mrgpra2a nonsynonymous SNV uc009hag.2:c.A947T:p.E316V exonic ENSMUSG00000039854 nonsynonymous SNV ENSMUST00000060569:c.A869T:p.E290V 7qB4 "Score=0.992523;Name=No.101347,chr7:54709200" NA chr7 54681932 GTCxCAG T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 246 0 25 39.291387 0.261538 0.02 1.125186 48 17 1389 474 46 46 0 0 TT 39.094587 130 0 3632 0 KEEP - Mrgpra2a NO AID_2 chr7 54845133 54845133 C A exonic Mrgpra3 synonymous SNV NM_153067:c.G414T:p.L138L exonic Mrgpra3 synonymous SNV uc009haj.2:c.G414T:p.L138L exonic ENSMUSG00000078698 synonymous SNV ENSMUST00000046797:c.G333T:p.L111L 7qB4 "Score=0.935045;Name=No.101352,chr7:54805085" NA chr7 54845133 AGAxAGG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 117 2 5 8.008788 0.108108 0.02 -0.412193 33 4 962 116 60 60 0 0 CC 18.34806 61 0 1713 0 KEEP - Mrgpra3 NO AID_2 chr7 55236551 55236551 A T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.T671A:p.L224H exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.T671A:p.L224H exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.T671A:p.L224H 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236551 AGAxGAA A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 162 1 2 18.217227 0.147541 0.02 0.976118 52 9 1496 250 60 60 0 0 AA 18.945799 63 0 1739 0 KEEP - Mrgpra4 NO AID_2 chr7 55236571 55236571 C T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.G651A:p.M217I exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.G651A:p.M217I exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.G651A:p.M217I 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236571 CAGxATG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 196 1 3 10.197508 0.08 0.02 0.72911 69 6 2018 164 60 60 0 0 CC 22.860117 76 0 2127 0 KEEP - Mrgpra4 YES AID_2 chr7 55236580 55236580 C G exonic Mrgpra4 synonymous SNV NM_153524:c.G642C:p.V214V exonic Mrgpra4 synonymous SNV uc009hak.1:c.G642C:p.V214V exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G642C:p.V214V 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236580 GGTxACG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 211 1 3 14.180902 0.088608 0.02 2.863792 72 7 2108 211 60 60 0 0 CC 25.568402 85 0 2417 0 KEEP - Mrgpra4 NO AID_2 chr7 55236601 55236601 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G621A:p.T207T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G621A:p.T207T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G621A:p.T207T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236601 TTTxGTC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 233 3 3 27.200901 0.154762 0.02 2.37401 71 13 1909 367 60 60 0 0 CC 27.652936 92 0 2412 0 KEEP - Mrgpra4 YES AID_2 chr7 55236643 55236643 G A exonic Mrgpra4 synonymous SNV NM_153524:c.C579T:p.T193T exonic Mrgpra4 synonymous SNV uc009hak.1:c.C579T:p.T193T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.C579T:p.T193T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236643 CAGxGTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 260 3 1 31.628114 0.184211 0.02 2.649563 62 14 1754 407 60 60 0 0 GG 34.279803 114 0 3142 0 KEEP - Mrgpra4 YES AID_2 chr7 55236700 55236700 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G522A:p.T174T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G522A:p.T174T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G522A:p.T174T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236700 GTTxGTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 228 0 0 37.229292 0.266667 0.02 0.985278 44 16 1162 447 60 60 0 0 CC 33.35385 111 0 2837 0 KEEP - Mrgpra4 YES AID_2 chr7 55276756 55276756 A G exonic Mrgprx1 synonymous SNV NM_207540:c.T612C:p.I204I exonic Mrgprx1 synonymous SNV uc009hal.1:c.T612C:p.I204I exonic ENSMUSG00000070552 synonymous SNV ENSMUST00000094390:c.T612C:p.I204I 7qB4 NA NA chr7 55276756 GAGxATC A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.321303 0.322807 0.995343 34 0 0 18.314799 0.388889 0.02 -0.157849 11 7 315 202 60 60 0 0 AA 4.195495 14 0 372 0 KEEP - Mrgprx1 NO AID_2 chr7 55277022 55277022 T C exonic Mrgprx1 nonsynonymous SNV NM_207540:c.A346G:p.I116V exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.A346G:p.I116V exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.A346G:p.I116V 7qB4 NA NA chr7 55277022 GGAxGCT T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 73 1 0 18.382793 0.290323 0.02 -0.271773 22 9 609 222 60 60 0 0 TT 8.025024 29 1 785 6 KEEP - Mrgprx1 NO AID_2 chr7 55277271 55277271 C T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.G97A:p.V33I exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.G97A:p.V33I exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.G97A:p.V33I 7qB4 NA NA chr7 55277271 GGAxCAG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999863 33 0 0 6.943071 0.333333 0.02 -0.078921 6 3 172 80 60 60 0 0 CC 6.015807 20 0 559 0 KEEP - Mrgprx1 YES AID_2 chr7 55277275 55277275 G T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.C93A:p.F31L exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.C93A:p.F31L exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.C93A:p.F31L 7qB4 NA NA chr7 55277275 CAGxAAG G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12042 0.120436 0.999869 35 0 0 9.776378 0.363636 0.02 -0.096468 7 4 207 110 60 60 0 0 GG 6.316971 21 0 593 0 KEEP - Mrgprx1 NO AID_2 chr7 55277282 55277282 A G exonic Mrgprx1 nonsynonymous SNV NM_207540:c.T86C:p.L29P exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.T86C:p.L29P exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.T86C:p.L29P 7qB4 NA NA chr7 55277282 GACxGGG A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162446 0.162467 0.999869 36 0 0 8.597837 0.333333 0.02 -0.113647 8 4 211 100 60 60 0 0 AA 6.315881 21 0 575 0 KEEP - Mrgprx1 NO AID_2 chr7 55454369 55454369 C T exonic Mrgprb4 synonymous SNV NM_205795:c.G180A:p.R60R exonic Mrgprb4 synonymous SNV uc009han.1:c.G180A:p.R60R exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.G180A:p.R60R 7qB4 NA NA chr7 55454369 ATTxCTA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552849 0.552887 0.999931 60 0 0 7.37359 0.210526 0.02 -0.218934 15 4 441 97 60 60 0 0 CC 7.512868 25 0 693 0 KEEP - Mrgprb4 YES AID_2 chr7 55644240 55644240 C T exonic Mrgprb8 synonymous SNV NM_207539:c.C288T:p.I96I exonic Mrgprb8 synonymous SNV uc009hao.2:c.C288T:p.I96I exonic ENSMUSG00000050870 synonymous SNV ENSMUST00000056676:c.C288T:p.I96I 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644240 CATxGAC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 150 1 0 55.646907 0.456522 0.02 -0.403328 25 21 684 594 60 60 0 0 CC 19.462916 74 1 1902 26 KEEP + Mrgprb8 YES AID_2 chr7 55644712 55644712 C T exonic Mrgprb8 nonsynonymous SNV NM_207539:c.C760T:p.P254S exonic Mrgprb8 nonsynonymous SNV uc009hao.2:c.C760T:p.P254S exonic ENSMUSG00000050870 nonsynonymous SNV ENSMUST00000056676:c.C760T:p.P254S 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644712 ATGxCTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612365 0.612407 0.999931 66 0 0 34.579231 0.481481 0.02 -0.236786 14 13 411 365 60 60 0 0 CC 7.519446 25 0 691 0 KEEP + Mrgprb8 YES AID_2 chr7 55702613 55702613 T C exonic Mrgprb1 nonsynonymous SNV NM_205810:c.A920G:p.K307R exonic Mrgprb1 nonsynonymous SNV uc009hap.1:c.A920G:p.K307R exonic ENSMUSG00000070547 nonsynonymous SNV ENSMUST00000094384:c.A920G:p.K307R 7qB4 NA NA chr7 55702613 AGCxTGA T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 124 0 0 45.453748 0.361702 0.02 -0.412199 30 17 862 507 60 60 0 0 TT 19.550963 65 0 1806 0 KEEP - Mrgprb1 NO AID_2 chr7 56133457 56133457 T A exonic E2f8 synonymous SNV NM_001013368:c.A306T:p.S102S exonic E2f8 synonymous SNV uc009haz.2:c.A306T:p.S102S exonic ENSMUSG00000046179 synonymous SNV ENSMUST00000058745:c.A306T:p.S102S 7qB4 NA NA chr7 56133457 TCCxGAT T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 161 0 0 66.104532 0.431034 0.02 1.284894 33 25 943 714 60 60 0 0 TT 23.149536 77 0 2102 0 KEEP - E2f8 NO AID_2 chr7 56803423 56803423 T C exonic Nav2 synonymous SNV NM_175272:c.T3429C:p.S1143S exonic Nav2 synonymous SNV uc009hbm.2:c.T3429C:p.S1143S exonic ENSMUSG00000052512 synonymous SNV ENSMUST00000064395:c.T3429C:p.S1143S 7qB4 NA NA chr7 56803423 CAGxGGG T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 46 0 0 19.407393 0.421053 0.02 -0.16624 11 8 286 212 60 60 0 0 TT 5.405568 18 0 465 0 KEEP + Nav2 NO AID_2 chr7 57484324 57484324 T G intronic Nell1 NA NA intronic Nell1 NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57484324 GTCxGCT T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522114 0.522161 0.999909 56 1 0 80.13476 1 0.02 -0.210464 0 24 0 687 0 60 0 0 TT 7.217961 24 0 656 0 KEEP + Nell1 NO AID_2 chr7 57855795 57855795 G A UTR3 4933405O20Rik NA NA UTR3 4933405O20Rik NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57855795 AGAxAGT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 26 0 0 35.83995 1 0.02 -0.096456 0 11 0 306 0 60 0 0 GG 3.609479 12 0 337 0 KEEP + 4933405O20Rik YES AID_2 chr7 58802341 58802341 C T intronic Ano5 NA NA intronic Ano5 NA NA intronic ENSMUSG00000055489 NA NA 7qB5 NA NA chr7 58802341 AACxCCT C T 2-AID-R-P_1 7-E185-R-P_1 0 DBSNP UNCOVERED 0.13982 0.139832 0.999912 55 0 0 6.753148 1 0.02 -0.10524 0 2 0 58 0 60 0 0 CC 11.129241 37 0 1035 0 KEEP + Ano5 YES AID_2 chr7 59116908 59116908 G A exonic Fancf synonymous SNV NM_001115087:c.C717T:p.A239A exonic Fancf synonymous SNV uc012flg.1:c.C717T:p.A239A exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.C717T:p.A239A 7qB5 NA NA chr7 59116908 CTTxGCT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 116 4 0 155.12128 1 0.02 -0.420583 0 48 0 1323 0 60 0 0 GG 13.52681 45 0 1245 0 KEEP - Fancf YES AID_2 chr7 59117508 59117508 A G exonic Fancf synonymous SNV NM_001115087:c.T117C:p.R39R exonic Fancf synonymous SNV uc012flg.1:c.T117C:p.R39R exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.T117C:p.R39R 7qB5 NA NA chr7 59117508 ATAxCGC A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 90 0 0 127.303315 1 0.02 -0.333223 0 38 0 1092 0 60 0 0 AA 11.67874 43 1 1166 11 KEEP - Fancf NO AID_2 chr7 59117648 59117648 C T upstream Fancf NA NA UTR5 Gas2 NA NA UTR5 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59117648 CATxCCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 88 0 0 129.562878 1 0.02 1.356274 0 41 0 1101 0 60 0 0 CC 11.067771 37 0 1022 0 KEEP + Fancf YES AID_2 chr7 59220735 59220735 G A intronic Gas2 NA NA UTR3 Gas2 NA NA UTR3 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59220735 TGAxCCT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 0.999998 58 0 0 32.163253 1 0.02 -0.14014 0 10 0 274 0 60 0 0 GG 10.223343 34 0 926 0 KEEP + Gas2 YES AID_2 chr7 63027927 63027927 C G exonic Siglech nonsynonymous SNV NM_178706:c.C913G:p.H305D exonic Siglech nonsynonymous SNV uc009hdb.2:c.C865G:p.H289D exonic ENSMUSG00000051504 nonsynonymous SNV ENSMUST00000094360:c.C865G:p.H289D 7qB5 NA NA chr7 63027927 GCAxACG C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120422 0.120436 0.999879 40 0 0 37.742224 1 0.02 -0.096472 0 11 0 325 0 60 0 0 CC 6.617305 22 0 614 0 KEEP + Siglech NO AID_2 chr7 63068956 63068956 A T intronic Tubgcp5 NA NA intronic Tubgcp5 NA NA intronic ENSMUSG00000033790 NA NA 7qB5 NA NA chr7 63068956 TGCxGGC A T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 98 2 0 96.418165 1 0.02 -0.254319 0 29 0 826 0 60 0 0 AA 14.738777 49 0 1371 0 KEEP + Tubgcp5 NO AID_2 chr7 63147515 63147515 G C intronic Cyfip1 NA NA exonic Cyfip1 nonsynonymous SNV uc009hdj.1:c.G1267C:p.G423R exonic ENSMUSG00000030447 nonsynonymous SNV ENSMUST00000168271:c.G1267C:p.G423R 7qB5 NA NA chr7 63147515 ATCxGAG G C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 0.999999 63 3 0 46.236469 1 0.02 -0.148991 0 15 0 391 0 60 0 0 GG 10.824513 36 0 965 0 KEEP + Cyfip1 NO AID_2 chr7 63148642 63148642 C T intronic Cyfip1 NA NA intronic Cyfip1 NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63148642 CTCxCTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.227464 0.229173 0.99254 29 2 0 49.143849 1 0.02 -0.13152 0 15 0 420 0 60 0 0 CC 2.70719 9 0 252 0 KEEP + Cyfip1 YES AID_2 chr7 63181924 63181924 G A intronic Cyfip1 NA NA intronic "Cyfip1,Shyc" NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63181924 GGGxGGG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 50 0 0 61.057811 1 0.02 -0.181765 0 20 0 517 0 60 0 0 GG 6.015121 20 0 549 0 KEEP + Cyfip1 YES AID_2 chr7 63327733 63327733 A G exonic Herc2 synonymous SNV NM_010418:c.A258G:p.E86E exonic "Herc2,rjs" synonymous SNV uc009hdw.1:c.A258G:p.E86E exonic ENSMUSG00000030451 synonymous SNV ENSMUST00000041015:c.A144G:p.E48E 7qB5 NA NA chr7 63327733 AGAxGAG A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196309 0.196312 0.999988 53 0 0 48.473389 1 0.02 -0.122792 0 14 0 418 0 60 0 0 AA 8.121873 27 0 763 0 KEEP + Herc2 NO AID_2 chr7 63440089 63440089 T C intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440089 TGGxTGT T C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582854 0.58293 0.999869 51 0 0 85.315109 1 0.02 -0.22803 0 25 0 734 0 60 0 0 TT 6.315743 21 0 572 0 KEEP + Herc2 NO AID_2 chr7 63440091 63440091 G A intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440091 GTTxTGA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58285 0.58293 0.999863 50 0 0 78.303223 1 0.02 -0.227947 0 25 0 664 0 60 0 0 GG 6.015478 20 0 556 0 KEEP + Herc2 YES AID_2 chr7 63585644 63585644 G A intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63585644 ATTxAGC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036742 0.036766 0.999366 27 0 0 14.747011 1 0.02 -0.052367 0 5 0 124 0 60 0 0 GG 5.113871 17 0 485 0 KEEP + Oca2 YES AID_2 chr7 63612621 63612621 C T intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63612621 TTAxTCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 57 2 0 52.622889 1 0.02 -0.157845 0 16 0 450 0 60 0 0 CC 7.520355 25 0 710 0 KEEP + Oca2 YES AID_2 chr7 64677117 64677117 G A exonic Gabra5 synonymous SNV NM_176942:c.C720T:p.S240S exonic Gabra5 synonymous SNV uc009heb.1:c.C720T:p.S240S exonic ENSMUSG00000055078 synonymous SNV ENSMUST00000068456:c.C720T:p.S240S 7qC NA NA chr7 64677117 TGTxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 54 2 0 50.418999 1 0.02 -0.149049 0 16 0 428 0 60 0 0 GG 6.919216 23 0 662 0 KEEP - Gabra5 YES AID_2 chr7 64708281 64708281 C T intronic Gabra5 NA NA intronic Gabra5 NA NA intronic ENSMUSG00000055078 NA NA 7qC NA NA chr7 64708281 ACAxGCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139815 0.139832 0.999879 38 3 0 35.038842 1 0.02 -0.105217 0 11 0 298 0 60 0 0 CC 6.614702 22 0 581 0 KEEP - Gabra5 YES AID_2 chr7 69127143 69127143 C A ncRNA_exonic A330076H08Rik NA NA ncRNA_exonic A330076H08Rik NA NA ncRNA_exonic ENSMUSG00000087490 NA NA 7qC NA NA chr7 69127143 GGTxTCA C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 95 0 0 22.096062 0.27027 0.02 -0.333201 27 10 787 267 60 60 0 0 CC 11.732223 39 0 1120 0 KEEP - A330076H08Rik NO AID_2 chr7 71082806 71082806 G A intronic Klf13 NA NA intronic Klf13 NA NA intronic ENSMUSG00000052040 NA NA 7qC NA NA chr7 71082806 CAAxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 274 4 0 41.63599 0.195876 0.02 0.93406 78 19 2316 534 60 60 0 0 GG 36.384109 121 0 3400 0 KEEP - Klf13 YES AID_2 chr7 77503045 77503045 G A exonic Nr2f2 nonsynonymous SNV NM_009697:c.C574T:p.P192S exonic Nr2f2 nonsynonymous SNV uc009hni.1:c.C574T:p.P192S exonic ENSMUSG00000030551 nonsynonymous SNV ENSMUST00000032768:c.C574T:p.P192S 7qD1 NA NA chr7 77503045 TGGxGTA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 194 2 0 66.559373 0.356164 0.02 1.14455 47 26 1363 748 60 60 0 0 GG 27.032144 90 0 2461 0 KEEP - Nr2f2 YES AID_2 chr7 77504820 77504820 C T exonic Nr2f2 synonymous SNV NM_009697:c.G396A:p.Q132Q exonic Nr2f2 synonymous SNV uc009hni.1:c.G396A:p.Q132Q exonic ENSMUSG00000030551 synonymous SNV ENSMUST00000032768:c.G396A:p.Q132Q 7qD1 NA NA chr7 77504820 GTAxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 227 1 0 111.011739 0.546667 0.02 1.037518 34 41 997 1139 60 60 0 0 CC 28.573957 95 0 2658 0 KEEP - Nr2f2 YES AID_2 chr7 77504881 77504881 C T exonic Nr2f2 nonsynonymous SNV NM_009697:c.G335A:p.S112N exonic Nr2f2 nonsynonymous SNV uc009hni.1:c.G335A:p.S112N exonic ENSMUSG00000030551 nonsynonymous SNV ENSMUST00000032768:c.G335A:p.S112N 7qD1 NA NA chr7 77504881 TAGxTCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 196 1 0 13.055488 0.109375 0.02 1.125167 57 7 1674 193 60 60 0 0 CC 29.178371 97 0 2742 0 KEEP - Nr2f2 YES AID_2 chr7 77504937 77504937 C T exonic Nr2f2 synonymous SNV NM_009697:c.G279A:p.Q93Q exonic Nr2f2 synonymous SNV uc009hni.1:c.G279A:p.Q93Q exonic ENSMUSG00000030551 synonymous SNV ENSMUST00000032768:c.G279A:p.Q93Q 7qD1 NA NA chr7 77504937 GAAxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 139 0 0 7.137267 0.083333 0.02 -0.420976 44 4 1296 112 60 60 0 0 CC 20.449409 68 0 1883 0 KEEP - Nr2f2 YES AID_2 chr7 90560450 90560450 T G intergenic "4933430H16Rik(dist=440549),Tmc3(dist=172991)" NA NA intergenic "AK020043(dist=211616),Tmc3(dist=172991)" NA NA upstream ENSMUSG00000090508 NA NA 7qD3 "Score=0.956059;Name=No.101380,chr7:58195211" NA chr7 90560450 CTGxCAG T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 96 0 0 8.164352 0.117647 0.02 -0.315686 30 4 832 116 60 30 0 0 TT 13.232253 44 0 1190 0 KEEP NA 4933430H16Rik NO AID_2 chr7 90560462 90560462 C A intergenic "4933430H16Rik(dist=440561),Tmc3(dist=172979)" NA NA intergenic "AK020043(dist=211628),Tmc3(dist=172979)" NA NA upstream ENSMUSG00000090508 NA NA 7qD3 "Score=0.956059;Name=No.101380,chr7:58195211" NA chr7 90560462 TGCxTAG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 106 0 0 14.772773 0.179487 0.02 -0.359569 32 7 934 194 60 52 0 0 CC 14.136402 47 0 1319 0 KEEP NA 4933430H16Rik NO AID_2 chr7 91234718 91234718 C T intronic 9930013L23Rik NA NA intronic 9930013L23Rik NA NA intronic ENSMUSG00000052353 NA NA 7qD3 NA NA chr7 91234718 CTCxCCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 370 2 0 9.5957 0.04918 0.02 2.418838 116 6 3359 171 60 60 0 0 CC 49.931017 166 0 4626 0 KEEP - 9930013L23Rik YES AID_2 chr8 105197937 105197937 T A exonic Cdh11 nonsynonymous SNV NM_009866:c.A298T:p.I100F exonic Cdh11 nonsynonymous SNV uc009mzu.1:c.A298T:p.I100F exonic ENSMUSG00000031673 nonsynonymous SNV ENSMUST00000075190:c.A298T:p.I100F 8qD2 "Score=0.936759;Name=No.103939,chr8:19990962" NA chr8 105197937 AAAxGGT T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 120 4 4 13.223661 0.15 0.02 -0.35076 34 6 940 177 60 38 0 0 TT 18.345633 61 0 1658 0 KEEP - Cdh11 NO AID_2 chr8 107577215 107577215 G A intronic Ces3a NA NA intronic Ces3a NA NA intronic ENSMUSG00000069922 NA NA 8qD3 NA NA chr8 107577215 AACxGTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 76 2 0 16.80525 0.28 0.02 -0.21911 18 7 448 199 60 60 0 0 GG 12.013921 40 0 961 0 KEEP + Ces3a YES AID_2 chr8 107992529 107992529 C G UTR5 Tppp3 NA NA UTR5 Tppp3 NA NA UTR5 ENSMUSG00000014846 NA NA 8qD3 NA NA chr8 107992529 ATGxCAC C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 96 2 0 29.174265 0.307692 0.02 -0.341876 27 12 746 339 60 60 0 0 CC 14.101605 47 0 1228 0 KEEP - Tppp3 NO AID_2 chr8 108512852 108512852 C A exonic Dpep2 nonsynonymous SNV NM_176913:c.G1005T:p.E335D exonic Dpep2 nonsynonymous SNV uc009ney.1:c.G1005T:p.E335D exonic ENSMUSG00000053687 nonsynonymous SNV ENSMUST00000117555:c.G459T:p.E153D 8qD3 NA NA chr8 108512852 TACxTCA C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229028 0.229173 0.999366 35 0 0 12.021992 0.357143 0.02 -0.131547 9 5 266 136 60 60 0 0 CC 5.113921 17 0 484 0 KEEP - Dpep2 NO AID_2 chr8 11006010 11006010 G A exonic Irs2 synonymous SNV NM_001081212:c.C2421T:p.C807C exonic Irs2 synonymous SNV uc009kuz.1:c.C2421T:p.C807C exonic ENSMUSG00000038894 synonymous SNV ENSMUST00000040514:c.C2421T:p.C807C 8qA1.1 NA NA chr8 11006010 GCTxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 103 2 0 32.943771 0.419355 0.02 -0.271853 18 13 530 359 60 60 0 0 GG 16.527097 55 0 1519 0 KEEP - Irs2 YES AID_2 chr8 129115190 129115190 G A exonic Irf2bp2 synonymous SNV NM_001164598:c.C1536T:p.F512F exonic Irf2bp2 synonymous SNV uc009nyw.2:c.C1536T:p.F512F exonic ENSMUSG00000051495 synonymous SNV ENSMUST00000054960:c.C1536T:p.F512F 8qE2 NA NA chr8 129115190 ACAxAAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 83 0 0 8.097574 0.133333 0.02 -0.262922 26 4 756 113 60 60 0 0 GG 11.431767 38 0 1095 0 KEEP - Irf2bp2 YES AID_2 chr8 129115373 129115373 C T exonic Irf2bp2 synonymous SNV NM_001164598:c.G1353A:p.R451R exonic Irf2bp2 synonymous SNV uc009nyw.2:c.G1353A:p.R451R exonic ENSMUSG00000051495 synonymous SNV ENSMUST00000054960:c.G1353A:p.R451R 8qE2 NA NA chr8 129115373 AAGxCTT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 83 0 0 7.529652 0.121212 0.02 -0.296862 29 4 781 109 60 60 0 0 CC 12.03027 40 0 1099 0 KEEP - Irf2bp2 YES AID_2 chr8 129116299 129116299 G T intronic Irf2bp2 NA NA intronic Irf2bp2 NA NA intronic ENSMUSG00000051495 NA NA 8qE2 NA NA chr8 129116299 CACxCCC G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 135 2 0 12.070254 0.122449 0.02 1.348177 43 6 989 171 70 60 0 0 GG 17.948222 60 0 1405 0 KEEP - Irf2bp2 NO AID_2 chr8 129116390 129116390 G A exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.C947T:p.A316V exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.C947T:p.A316V exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.C947T:p.A316V 8qE2 NA NA chr8 129116390 CCTxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 204 2 0 7.954463 0.067568 0.02 0.939582 69 5 2036 135 60 60 0 0 GG 27.071374 90 0 2537 0 KEEP - Irf2bp2 YES AID_2 chr8 129116393 129116393 G A exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.C944T:p.A315V exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.C944T:p.A315V exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.C944T:p.A315V 8qE2 NA NA chr8 129116393 GCTxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 203 2 0 8.451211 0.067568 0.02 0.9396 69 5 2022 140 60 60 0 0 GG 26.771773 89 0 2515 0 KEEP - Irf2bp2 YES AID_2 chr8 129116403 129116403 C T exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.G934A:p.A312T exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.G934A:p.A312T exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.G934A:p.A312T 8qE2 NA NA chr8 129116403 GAGxCGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 189 2 0 12.715913 0.101449 0.02 1.081371 62 7 1791 192 60 60 0 0 CC 24.53332 82 0 2224 0 KEEP - Irf2bp2 YES AID_2 chr8 129116406 129116406 G A exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.C931T:p.P311S exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.C931T:p.P311S exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.C931T:p.P311S 8qE2 NA NA chr8 129116406 CCGxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 189 2 0 8.578166 0.074627 0.02 1.00205 62 5 1736 139 60 60 0 0 GG 24.359761 81 0 2227 0 KEEP - Irf2bp2 YES AID_2 chr8 129116422 129116422 G A exonic Irf2bp2 synonymous SNV NM_001164598:c.C915T:p.S305S exonic Irf2bp2 synonymous SNV uc009nyw.2:c.C915T:p.S305S exonic ENSMUSG00000051495 synonymous SNV ENSMUST00000054960:c.C915T:p.S305S 8qE2 NA NA chr8 129116422 CTTxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 175 2 0 26.629084 0.232143 0.02 1.000208 43 13 1258 336 60 60 0 0 GG 24.364231 81 0 2271 0 KEEP - Irf2bp2 YES AID_2 chr8 129116423 129116423 C T exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.G914A:p.S305N exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.G914A:p.S305N exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.G914A:p.S305N 8qE2 NA NA chr8 129116423 TTGxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 171 2 0 23.818676 0.189655 0.02 1.17779 47 11 1380 308 60 60 0 0 CC 24.047017 80 0 2234 0 KEEP - Irf2bp2 YES AID_2 chr8 129116702 129116702 C T exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.G635A:p.G212E exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.G635A:p.G212E exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.G635A:p.G212E 8qE2 NA NA chr8 129116702 GCTxCCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.520328 0.522161 0.99649 40 0 0 8.681642 0.235294 0.02 -0.210412 13 4 371 108 60 60 0 0 CC 4.512034 15 0 422 0 KEEP - Irf2bp2 YES AID_2 chr8 129116750 129116750 C T exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.G587A:p.G196D exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.G587A:p.G196D exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.G587A:p.G196D 8qE2 NA NA chr8 129116750 CGGxCGC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 75 0 0 21.431374 0.333333 0.02 -0.254227 18 9 491 246 60 60 0 0 CC 10.765231 36 0 962 0 KEEP - Irf2bp2 YES AID_2 chr8 129116795 129116795 G A exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.C542T:p.T181I exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.C542T:p.T181I exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.C542T:p.T181I 8qE2 NA NA chr8 129116795 AGAxTGG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 123 0 0 25.432203 0.275 0.02 -0.368302 29 11 829 304 60 60 0 0 GG 18.044776 60 0 1664 0 KEEP - Irf2bp2 YES AID_2 chr8 129116844 129116844 G A exonic Irf2bp2 synonymous SNV NM_001164598:c.C493T:p.L165L exonic Irf2bp2 synonymous SNV uc009nyw.2:c.C493T:p.L165L exonic ENSMUSG00000051495 synonymous SNV ENSMUST00000054960:c.C493T:p.L165L 8qE2 NA NA chr8 129116844 TCAxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 133 0 0 11.399943 0.153846 0.02 -0.350745 33 6 966 158 60 60 0 0 GG 19.239448 64 0 1773 0 KEEP - Irf2bp2 YES AID_2 chr8 129116853 129116853 G A exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.C484T:p.P162S exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.C484T:p.P162S exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.C484T:p.P162S 8qE2 NA NA chr8 129116853 GCGxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 121 0 0 26.962614 0.307692 0.02 -0.341763 27 12 776 317 60 60 0 0 GG 17.636111 59 0 1530 0 KEEP - Irf2bp2 YES AID_2 chr8 129116872 129116872 C T exonic Irf2bp2 synonymous SNV NM_001164598:c.G465A:p.G155G exonic Irf2bp2 synonymous SNV uc009nyw.2:c.G465A:p.G155G exonic ENSMUSG00000051495 synonymous SNV ENSMUST00000054960:c.G465A:p.G155G 8qE2 NA NA chr8 129116872 GAAxCCG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 112 0 0 9.605756 0.128205 0.02 -0.350756 34 5 966 137 60 60 0 0 CC 13.531744 45 0 1215 0 KEEP - Irf2bp2 YES AID_2 chr8 129117273 129117273 G A exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.C64T:p.P22S exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.C64T:p.P22S exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.C64T:p.P22S 8qE2 NA NA chr8 129117273 GGGxCAG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 40 0 0 6.392661 0.176471 0.02 -0.149083 14 3 400 84 60 60 0 0 GG 4.511655 15 0 415 0 KEEP - Irf2bp2 YES AID_2 chr8 129117290 129117290 C T exonic Irf2bp2 nonsynonymous SNV NM_001164598:c.G47A:p.C16Y exonic Irf2bp2 nonsynonymous SNV uc009nyw.2:c.G47A:p.C16Y exonic ENSMUSG00000051495 nonsynonymous SNV ENSMUST00000054960:c.G47A:p.C16Y 8qE2 NA NA chr8 129117290 TAGxACG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.259304 0.260965 0.993634 34 0 0 13.662842 0.375 0.02 -0.140264 10 6 285 154 60 60 0 0 CC 3.610054 12 0 346 0 KEEP - Irf2bp2 YES AID_2 chr8 131702299 131702299 C G intronic 1700008F21Rik NA NA intronic 1700008F21Rik NA NA intronic ENSMUSG00000056018 NA NA 8qE2 "Score=0.94248;Name=No.68338,chr17:95179976" NA chr8 131702299 AAAxTGA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 223 2 0 72.445112 0.411765 0.02 1.295821 40 28 1190 791 60 60 0 0 CC 34.294856 114 0 3273 0 KEEP + 1700008F21Rik NO AID_2 chr8 19752140 19752140 T A intronic "4930467E23Rik,Gm21119" NA NA intronic 4930467E23Rik NA NA intronic ENSMUSG00000074456 NA NA 8qA1.3 "Score=0.984202;Name=No.103897,chr8:19917208" NA chr8 19752140 ACCxCCC T A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1673 7 234 53.083446 0.066116 0.02 10.131774 452 32 12991 889 53 37 0 0 TT 256.760936 858 1 23992 11 KEEP + 4930467E23Rik NO AID_2 chr8 20019797 20019797 G A ncRNA_intronic "2610005L07Rik,6820431F20Rik" NA NA exonic Gm10348 stopgain SNV uc009lbg.1:c.C478T:p.R160X ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20019797 ATCxGAA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 245 3 53 7.780803 0.095238 0.02 -0.367729 38 4 1047 116 60 60 0 0 GG 42.987507 143 0 3781 0 KEEP - 2610005L07Rik YES AID_2 chr8 20020279 20020279 G T ncRNA_exonic 2610005L07Rik NA NA UTR5 Gm10348 NA NA ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020279 TTTxCCC G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 559 8 123 10.525873 0.051852 0.02 2.17287 128 7 3715 191 60 29 0 0 GG 87.495497 291 0 8138 0 KEEP - 2610005L07Rik NO AID_2 chr8 20020448 20020448 G T upstream "2610005L07Rik,6820431F20Rik" NA NA upstream Gm10348 NA NA upstream ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020448 CGCxCCC G T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 261 5 15 10.909051 0.083333 0.02 1.154152 66 6 1821 170 60 60 0 0 GG 42.394179 141 0 3747 0 KEEP NA 2610005L07Rik NO AID_2 chr8 25012624 25012624 A G exonic Zmat4 synonymous SNV NM_177086:c.A330G:p.K110K exonic Zmat4 synonymous SNV uc009lew.2:c.A330G:p.K110K exonic ENSMUSG00000037492 synonymous SNV ENSMUST00000042352:c.A330G:p.K110K 8qA2 NA NA chr8 25012624 GAAxCCT A G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353901 0.353947 0.999869 43 2 0 15.2174 0.315789 0.02 -0.166608 13 6 354 175 60 60 0 0 AA 6.285465 21 0 527 0 KEEP + Zmat4 NO AID_2 chr8 25549096 25549096 C T exonic 1810011O10Rik synonymous SNV NM_026931:c.G273A:p.K91K exonic 1810011O10Rik synonymous SNV uc009lex.1:c.G273A:p.K91K exonic ENSMUSG00000056313 synonymous SNV ENSMUST00000052622:c.G273A:p.K91K 8qA2 NA NA chr8 25549096 AAGxTTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 73 0 0 10.28294 0.178571 0.02 -0.245554 23 5 667 136 60 60 0 0 CC 10.527503 35 0 975 0 KEEP - 1810011O10Rik YES AID_2 chr8 44736509 44736509 C G exonic Adam34 nonsynonymous SNV NM_145745:c.G1452C:p.E484D exonic Adam34 nonsynonymous SNV uc009loi.2:c.G1452C:p.E484D exonic ENSMUSG00000079058 nonsynonymous SNV ENSMUST00000110411:c.G1452C:p.E484D 8qA4 "Score=0.944875;Name=No.104124,chr8:44738701" NA chr8 44736509 ACAxTCA C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 529 2 0 136.679601 0.291667 0.02 3.984653 136 56 3914 1603 60 60 0 0 CC 74.595834 248 0 6941 0 KEEP - Adam34 NO AID_2 chr8 56201592 56201592 C T intergenic "Gpm6a(dist=55361),NONE(dist=NONE)" NA NA intergenic "Gpm6a(dist=55361),NONE(dist=NONE)" NA NA intergenic "ENSMUSG00000031517(dist=55361),ENSMUSG00000092881(dist=1760118)" NA NA 8qB1.3 "Score=0.987647;Name=No.104149,chr8:56203631" NA chr8 56201592 CTTxTCT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1764 10 430 25.251732 0.031414 0.02 13.604776 555 18 16530 513 53 35 0 0 CC 188.067507 628 1 17927 7 KEEP NA Gpm6a YES AID_2 chr8 66684176 66684176 C T exonic Tll1 nonsynonymous SNV NM_009390:c.G5A:p.G2D exonic Tll1 nonsynonymous SNV uc009lut.1:c.G5A:p.G2D exonic ENSMUSG00000053626 nonsynonymous SNV ENSMUST00000066166:c.G5A:p.G2D 8qB3.1 NA NA chr8 66684176 AAAxCCA C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322777 0.322807 0.999909 45 0 0 20.245564 0.444444 0.02 -0.157794 10 8 277 218 60 60 0 0 CC 7.218457 24 0 662 0 KEEP - Tll1 YES AID_2 chr8 73223293 73223293 C T exonic Jund synonymous SNV NM_010592:c.C337T:p.L113L exonic Jund synonymous SNV uc009mbe.2:c.C337T:p.L113L exonic ENSMUSG00000071076 synonymous SNV ENSMUST00000095267:c.C337T:p.L113L 8qB3.3 NA NA chr8 73223293 GGGxTGG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 132 1 0 48.168596 0.395833 0.02 -0.420936 29 19 850 531 60 60 0 0 CC 19.84165 66 0 1855 0 KEEP + Jund YES AID_2 chr8 84294682 84294682 A G intronic Inpp4b NA NA intronic Inpp4b NA NA intronic ENSMUSG00000037940 NA NA 8qC2 NA NA chr8 84294682 CCAxGTT A G 2-AID-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.760885 0.760887 0.999998 101 0 0 32.031351 0.363636 0.02 -0.28941 21 12 601 357 60 60 0 0 AA 14.137537 47 0 1321 0 KEEP + Inpp4b NO AID_2 chr8 87501501 87501501 C T exonic Junb synonymous SNV NM_008416:c.G828A:p.R276R exonic Junb synonymous SNV uc009mop.1:c.G816A:p.R272R exonic ENSMUSG00000052837 synonymous SNV ENSMUST00000064922:c.G828A:p.R276R 8qC3 NA NA chr8 87501501 CAGxCTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 153 0 0 36.204414 0.3 0.02 1.241442 35 15 997 423 60 60 0 0 CC 20.770671 79 1 2151 28 KEEP - Junb YES AID_2 chr8 87501502 87501502 C T exonic Junb nonsynonymous SNV NM_008416:c.G827A:p.R276K exonic Junb nonsynonymous SNV uc009mop.1:c.G815A:p.R272K exonic ENSMUSG00000052837 nonsynonymous SNV ENSMUST00000064922:c.G827A:p.R276K 8qC3 NA NA chr8 87501502 AGCxTGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 150 0 0 36.439628 0.294118 0.02 1.230527 36 15 1059 427 60 60 0 0 CC 23.158543 77 0 2158 0 KEEP - Junb YES AID_2 chr8 87501651 87501651 C G exonic Junb nonsynonymous SNV NM_008416:c.G678C:p.Q226H exonic Junb nonsynonymous SNV uc009mop.1:c.G666C:p.Q222H exonic ENSMUSG00000052837 nonsynonymous SNV ENSMUST00000064922:c.G678C:p.Q226H 8qC3 NA NA chr8 87501651 CAGxTGT C G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 75 0 0 44.767708 0.551724 0.02 -0.254318 13 16 375 458 60 60 0 0 CC 11.112998 37 0 1019 0 KEEP - Junb NO AID_2 chr8 87501937 87501937 C A exonic Junb nonsynonymous SNV NM_008416:c.G392T:p.G131V exonic Junb nonsynonymous SNV uc009mop.1:c.G380T:p.G127V exonic ENSMUSG00000052837 nonsynonymous SNV ENSMUST00000064922:c.G392T:p.G131V 8qC3 NA NA chr8 87501937 AAGxCCT C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162444 0.162467 0.99986 39 0 0 12.745018 0.416667 0.02 -0.105233 7 5 200 139 60 60 0 0 CC 5.713064 19 0 515 0 KEEP - Junb NO AID_2 chr8 87501939 87501939 C T exonic Junb synonymous SNV NM_008416:c.G390A:p.E130E exonic Junb synonymous SNV uc009mop.1:c.G378A:p.E126E exonic ENSMUSG00000052837 synonymous SNV ENSMUST00000064922:c.G390A:p.E130E 8qC3 NA NA chr8 87501939 GCCxTCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196285 0.196312 0.999863 41 0 0 16.009559 0.428571 0.02 -0.122787 8 6 239 173 60 60 0 0 CC 6.016047 20 0 562 0 KEEP - Junb YES AID_2 chr8 87502128 87502128 G A exonic Junb synonymous SNV NM_008416:c.C201T:p.S67S exonic Junb synonymous SNV uc009mop.1:c.C189T:p.S63S exonic ENSMUSG00000052837 synonymous SNV ENSMUST00000064922:c.C201T:p.S67S 8qC3 NA NA chr8 87502128 GTAxCTG G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 143 0 0 13.174423 0.12069 0.02 1.186804 51 7 1442 191 60 60 0 0 GG 20.44728 68 0 1905 0 KEEP - Junb YES AID_2 chr8 87502229 87502229 G A exonic Junb nonsynonymous SNV NM_008416:c.C100T:p.L34F exonic Junb nonsynonymous SNV uc009mop.1:c.C88T:p.L30F exonic ENSMUSG00000052837 nonsynonymous SNV ENSMUST00000064922:c.C100T:p.L34F 8qC3 NA NA chr8 87502229 GGAxTTT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 157 0 0 37.537432 0.301887 0.02 1.230468 37 16 1057 440 60 60 0 0 GG 22.828841 76 0 2049 0 KEEP - Junb YES AID_2 chr8 87502308 87502308 C T exonic Junb synonymous SNV NM_008416:c.G21A:p.Q7Q exonic Junb synonymous SNV uc009mop.1:c.G9A:p.Q3Q exonic ENSMUSG00000052837 synonymous SNV ENSMUST00000064922:c.G21A:p.Q7Q 8qC3 NA NA chr8 87502308 AGGxTGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 123 0 0 26.575759 0.282051 0.02 -0.341917 28 11 807 314 60 60 0 0 CC 18.936024 63 0 1745 0 KEEP - Junb YES AID_2 chr8_random 690820 690820 G A intergenic "Tsnax(dist=89305),NONE(dist=NONE)" NA NA intergenic "Tsnax(dist=89305),AK029792(dist=56894)" NA NA downstream ENSMUSG00000074455 NA NA NA "Score=0.989584;Name=No.105235,chr8_random:819725" NA chr8_random 690820 TTAxACT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1063 5 168 41.171777 0.086957 0.02 6.257363 231 22 6829 631 46 40 0 0 GG 192.514543 640 0 18378 0 KEEP NA Tsnax YES AID_2 chr9 102622879 102622879 G A exonic Amotl2 nonsynonymous SNV NM_019764:c.G407A:p.G136E exonic Amotl2 nonsynonymous SNV uc009rfx.1:c.G407A:p.G136E exonic ENSMUSG00000032531 nonsynonymous SNV ENSMUST00000035121:c.G407A:p.G136E 9qF1 NA NA chr9 102622879 GAGxGGT G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 101 0 0 26.844956 0.255319 0.02 -0.41133 35 12 964 327 60 60 0 0 GG 13.230395 44 0 1204 0 KEEP + Amotl2 YES AID_2 chr9 102622989 102622989 G A exonic Amotl2 nonsynonymous SNV NM_019764:c.G517A:p.A173T exonic Amotl2 nonsynonymous SNV uc009rfx.1:c.G517A:p.A173T exonic ENSMUSG00000032531 nonsynonymous SNV ENSMUST00000035121:c.G517A:p.A173T 9qF1 NA NA chr9 102622989 GGTxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 165 0 0 42.457268 0.322034 0.02 1.080093 40 19 1152 495 60 60 0 0 GG 23.69138 79 0 2147 0 KEEP + Amotl2 YES AID_2 chr9 105372363 105372363 T G intronic Atp2c1 NA NA ncRNA_exonic AK032255 NA NA intronic ENSMUSG00000032570 NA NA 9qF1 NA NA chr9 105372363 CACxTAC T G 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 132 0 0 29.847236 0.285714 0.02 -0.438416 35 14 1025 359 60 60 0 0 TT 19.840755 66 0 1835 0 KEEP - Atp2c1 NO AID_2 chr9 114346822 114346822 A C intronic Glb1 NA NA intronic Glb1 NA NA intronic ENSMUSG00000045594 NA NA 9qF3 NA NA chr9 114346822 GTAxGTG A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 70 0 0 13.146614 0.214286 0.02 -0.245556 22 6 638 166 60 60 0 0 AA 9.925738 33 0 916 0 KEEP + Glb1 NO AID_2 chr9 115869498 115869498 C T exonic Gadl1 synonymous SNV NM_028638:c.C753T:p.C251C exonic Gadl1 synonymous SNV uc009ryr.2:c.C753T:p.C251C exonic ENSMUSG00000056880 synonymous SNV ENSMUST00000121770:c.C753T:p.C251C 9qF3 NA NA chr9 115869498 CTGxGCC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 203 1 0 235.069106 1 0.02 1.144712 0 73 0 2003 0 60 0 0 CC 31.789491 106 0 2696 0 KEEP + Gadl1 YES AID_2 chr9 120037780 120037780 G A intronic Rpsa NA NA intronic Rpsa NA NA intronic ENSMUSG00000032518 NA NA 9qF4 NA NA chr9 120037780 GGTxCTC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 31 0 0 16.311019 0.5 0.02 -0.12264 7 7 199 172 60 60 0 0 GG 4.511523 15 0 413 0 KEEP + Rpsa YES AID_2 chr9 123573856 123573856 C A intronic Slc6a20a NA NA intronic Slc6a20a NA NA intronic ENSMUSG00000036814 NA NA 9qF4 NA NA chr9 123573856 TTAxCCG C A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260941 0.260965 0.999909 44 2 0 14.864738 0.375 0.02 -0.140314 10 6 291 166 60 60 0 0 CC 7.218401 24 0 663 0 KEEP - Slc6a20a NO AID_2 chr9 14397206 14397206 G A exonic Amotl1 synonymous SNV NM_001081395:c.C1149T:p.G383G exonic Amotl1 synonymous SNV uc009oep.1:c.C1149T:p.G383G exonic ENSMUSG00000013076 synonymous SNV ENSMUST00000013220:c.C1149T:p.G383G 9qA2 NA NA chr9 14397206 GACxCCA G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162444 0.162467 0.999859 37 0 0 22.353347 0.615385 0.02 -0.113988 5 8 137 223 60 60 0 0 GG 5.404802 18 0 437 0 KEEP - Amotl1 YES AID_2 chr9 19975219 19975219 A C exonic Olfr870 synonymous SNV NM_146904:c.T795G:p.T265T exonic Olfr870 synonymous SNV uc009oid.1:c.T795G:p.T265T exonic ENSMUSG00000066899 synonymous SNV ENSMUST00000086476:c.T795G:p.T265T 9qA3 "Score=0.939419;Name=No.105331,chr9:20016669" NA chr9 19975219 GGAxGTA A C 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 111 0 0 11.846289 0.162162 0.02 -0.324442 31 6 877 161 60 60 0 0 AA 17.446139 58 0 1623 0 KEEP - Olfr870 NO AID_2 chr9 59387638 59387638 C T exonic Hexa synonymous SNV NM_010421:c.C108T:p.R36R exonic Hexa synonymous SNV uc009pxw.1:c.C108T:p.R36R exonic ENSMUSG00000025232 synonymous SNV ENSMUST00000026262:c.C108T:p.R36R 9qB NA NA chr9 59387638 GCGxTAC C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 165 2 0 38.773269 0.293103 0.02 1.16906 41 17 1212 459 60 60 0 0 CC 23.372832 78 0 2137 0 KEEP + Hexa YES AID_2 chr9 70055472 70055472 G A UTR5 Myo1e NA NA UTR5 Myo1e NA NA UTR5 ENSMUSG00000032220 NA NA 9qD NA NA chr9 70055472 GCGxGAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457715 0.457757 0.999909 54 0 0 8.780392 0.181818 0.02 -0.192934 18 4 514 114 60 60 0 0 GG 7.216208 24 0 657 0 KEEP + Myo1e YES AID_2 chr9 85738120 85738120 G A exonic Tpbg synonymous SNV NM_001164792:c.G534A:p.L178L exonic Tpbg synonymous SNV uc009qwz.2:c.G534A:p.L178L exonic ENSMUSG00000035274 synonymous SNV ENSMUST00000006559:c.G534A:p.L178L 9qE3.1 NA NA chr9 85738120 GCTxATC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 199 2 0 9.486373 0.088235 0.02 1.099086 62 6 1842 154 60 60 0 0 GG 28.268631 94 0 2680 0 KEEP + Tpbg YES AID_2 chrX 149344294 149344294 C T intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA ncRNA_intronic ENSMUSG00000083440 NA NA XqF3 NA NA chrX 149344294 CTGxTGT C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 313 3 110 112.138674 0.483146 0.02 0.914924 46 43 1314 1184 60 60 0 0 CC 42.399266 141 0 3913 0 KEEP NA Gpr143 YES AID_2 chrX 151650689 151650689 G A exonic Sat1 nonsynonymous SNV NM_009121:c.C23T:p.P8L exonic Sat1 nonsynonymous SNV uc009urq.1:c.C23T:p.P8L exonic ENSMUSG00000025283 nonsynonymous SNV ENSMUST00000026318:c.C23T:p.P8L XqF3 NA NA chrX 151650689 GCTxGAC G A 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 85 0 0 79.534989 1 0.02 -0.210466 0 24 0 681 0 60 0 0 GG 11.129585 37 0 1042 0 KEEP - Sat1 YES AID_2 chrX 70919322 70919322 C T exonic Slc6a8 synonymous SNV NM_001142809:c.C195T:p.C65C exonic Slc6a8 synonymous SNV uc009tmf.2:c.C195T:p.C65C exonic ENSMUSG00000019558 synonymous SNV ENSMUST00000033752:c.C195T:p.C65C XqA7.3 NA NA chrX 70919322 GTGxGTG C T 2-AID-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 227 0 0 19.175653 0.178571 0.02 1.204376 46 10 1250 258 60 60 0 0 CC 39.678871 132 0 3455 0 KEEP + Slc6a8 YES B[a]P_1 chr10 100057207 100057207 C A UTR5 1700017N19Rik NA NA UTR5 1700017N19Rik NA NA UTR5 ENSMUSG00000056912 NA NA 10qD1 NA NA chr10 100057207 GCCxTTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999997 100 0 0 11.493997 0.103448 0.02 1.284959 52 6 1444 170 60 60 0 0 CC 9.325046 31 0 876 0 KEEP + 1700017N19Rik YES B[a]P_1 chr10 110393348 110393348 A G exonic Zdhhc17 nonsynonymous SNV NM_172554:c.T1034C:p.L345P exonic Zdhhc17 nonsynonymous SNV uc007gzu.2:c.T1034C:p.L345P exonic ENSMUSG00000035798 nonsynonymous SNV ENSMUST00000041723:c.T1034C:p.L345P 10qD1 NA NA chr10 110393348 GAAxGAA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 69 0 0 9.596484 0.178571 0.02 -0.245341 23 5 638 129 60 60 0 0 AA 10.527496 35 0 979 0 KEEP - Zdhhc17 NO B[a]P_1 chr10 126673091 126673091 T C intronic Kif5a NA NA intronic Kif5a NA NA intronic ENSMUSG00000074657 NA NA 10qD3 NA NA chr10 126673091 TGCxGGT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 137 0 0 7.738844 0.104167 0.02 1.230492 43 5 1232 123 60 60 0 0 TT 17.441615 58 0 1609 0 KEEP - Kif5a NO B[a]P_1 chr10 126673098 126673098 T C intronic Kif5a NA NA intronic Kif5a NA NA intronic ENSMUSG00000074657 NA NA 10qD3 NA NA chr10 126673098 AGGxGTG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 138 0 0 11.729019 0.142857 0.02 1.132919 42 7 1103 171 60 60 0 0 TT 18.037606 60 0 1597 0 KEEP - Kif5a NO B[a]P_1 chr10 126720936 126720936 G C exonic Mbd6 synonymous SNV NM_033072:c.C2472G:p.L824L exonic Mbd6 synonymous SNV uc007hiw.1:c.C2472G:p.L824L exonic ENSMUSG00000025409 synonymous SNV ENSMUST00000172567:c.C270G:p.L90L 10qD3 NA NA chr10 126720936 TTCxAGG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 174 2 0 28.403962 0.155556 0.02 0.906691 76 14 1894 386 60 60 0 0 GG 18.327967 61 0 1525 0 KEEP - Mbd6 NO B[a]P_1 chr10 126993805 126993805 C A intronic Lrp1 NA NA intronic Lrp1 NA NA intronic ENSMUSG00000040249 NA NA 10qD3 NA NA chr10 126993805 GGGxAAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 127 0 0 29.897955 0.17284 0.02 0.985301 67 14 1828 394 60 60 0 0 CC 13.199156 44 0 1196 0 KEEP - Lrp1 YES B[a]P_1 chr10 126995967 126995967 C A exonic Lrp1 nonsynonymous SNV NM_008512:c.G7607T:p.G2536V exonic Lrp1 nonsynonymous SNV uc007hjx.1:c.G7607T:p.G2536V exonic ENSMUSG00000040249 nonsynonymous SNV ENSMUST00000049149:c.G7607T:p.G2536V 10qD3 NA NA chr10 126995967 TCCxCAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 143 1 0 105.969038 0.488095 0.02 0.941139 43 41 1220 1117 60 60 0 0 CC 13.500783 45 0 1233 0 KEEP - Lrp1 YES B[a]P_1 chr10 126997004 126997004 C A intronic Lrp1 NA NA intronic Lrp1 NA NA intronic ENSMUSG00000040249 NA NA 10qD3 NA NA chr10 126997004 CTGxGGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877584 0.877708 0.999859 67 0 0 20.836153 0.225 0.02 -0.350691 31 9 824 258 60 60 0 0 CC 5.41325 18 0 488 0 KEEP - Lrp1 YES B[a]P_1 chr10 128214059 128214059 G T intergenic "Wibg(dist=10435),Mmp19(dist=13907)" NA NA intergenic "Wibg(dist=10439),Mmp19(dist=13907)" NA NA ncRNA_exonic ENSMUSG00000045055 NA NA 10qD3 "Score=0.985423;Name=No.9702,chr3:149735545" NA chr10 128214059 CTGxCCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 112 0 32 60.671193 0.534884 0.02 -0.376936 20 23 539 626 60 60 0 0 GG 14.977261 50 0 1368 0 KEEP NA Wibg YES B[a]P_1 chr10 128397686 128397686 G A exonic Mettl7b synonymous SNV NM_027853:c.C309T:p.F103F exonic Mettl7b synonymous SNV uc007hpd.1:c.C309T:p.F103F exonic ENSMUSG00000025347 synonymous SNV ENSMUST00000026398:c.C309T:p.F103F 10qD3 NA NA chr10 128397686 CTCxAAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 265 0 0 77.727662 0.263566 0.02 2.259911 95 34 2472 938 60 60 0 0 GG 30.578146 102 0 2633 0 KEEP - Mettl7b NO B[a]P_1 chr10 128597259 128597259 C A exonic Olfr771 synonymous SNV NM_146547:c.G780T:p.S260S exonic Olfr771 synonymous SNV uc007hpm.1:c.G780T:p.S260S exonic ENSMUSG00000061367 synonymous SNV ENSMUST00000078914:c.G780T:p.S260S 10qD3 NA NA chr10 128597259 TGCxGAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 125 0 0 8.808977 0.075758 0.02 1.116939 61 5 1538 141 60 60 0 0 CC 15.319255 51 0 1265 0 KEEP - Olfr771 YES B[a]P_1 chr10 128910416 128910416 T G exonic Olfr788 nonsynonymous SNV NM_146551:c.T667G:p.L223V exonic Olfr788 nonsynonymous SNV uc007hpz.1:c.T667G:p.L223V exonic ENSMUSG00000049217 nonsynonymous SNV ENSMUST00000056961:c.T667G:p.L223V 10qD3 NA NA chr10 128910416 ATTxTAA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 136 0 0 9.337726 0.077922 0.02 0.922201 71 6 1947 156 60 60 0 0 TT 15.640618 52 0 1441 0 KEEP + Olfr788 NO B[a]P_1 chr10 129563260 129563260 G T exonic Olfr824 synonymous SNV NM_146674:c.C852A:p.I284I exonic Olfr824 synonymous SNV uc007hre.1:c.C852A:p.I284I exonic ENSMUSG00000057264 synonymous SNV ENSMUST00000074161:c.C852A:p.I284I 10qD3 "Score=0.935852;Name=No.6054,chr10:129548402" NA chr10 129563260 GATxATA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 118 0 0 24.80292 0.193548 0.02 1.044918 50 12 1398 323 60 60 0 0 GG 12.033412 40 0 1151 0 KEEP - Olfr824 YES B[a]P_1 chr10 129822951 129822951 A T exonic Vmn2r84 nonsynonymous SNV NM_001081448:c.T2455A:p.L819M exonic Vmn2r84 nonsynonymous SNV uc007hrn.1:c.T2455A:p.L819M exonic ENSMUSG00000070601 nonsynonymous SNV ENSMUST00000094502:c.T2455A:p.L819M 10qD3 "Score=0.932;Name=No.6058,chr10:129882202" NA chr10 129822951 GCAxCCC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 378 2 21 165.387363 0.496124 0.02 2.250633 65 64 1770 1737 60 60 0 0 AA 61.651757 205 0 5635 0 KEEP - Vmn2r84 NO B[a]P_1 chr10 18366143 18366143 C A exonic D10Bwg1379e nonsynonymous SNV NM_001033258:c.G1940T:p.R647L exonic "Arfgef3,D10Bwg1379e" nonsynonymous SNV uc007emn.1:c.G1940T:p.R647L exonic ENSMUSG00000019852 nonsynonymous SNV ENSMUST00000019999:c.G1940T:p.R647L 10qA3 NA NA chr10 18366143 GACxGAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996232 0.996233 0.999999 118 0 0 60.5982 0.347826 0.02 1.188759 45 24 1141 685 60 60 0 0 CC 10.516222 35 0 876 0 KEEP - D10Bwg1379e YES B[a]P_1 chr10 23680707 23680707 C A exonic Taar4 stopgain SNV NM_001008499:c.C408A:p.C136X exonic Taar4 stopgain SNV uc007eqg.1:c.C408A:p.C136X exonic ENSMUSG00000069707 stopgain SNV ENSMUST00000092660:c.C408A:p.C136X 10qA4 NA NA chr10 23680707 CTGxGAC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 455 0 0 25.324705 0.069307 0.02 5.306868 188 14 4465 407 60 60 0 0 CC 53.280231 182 1 4505 12 KEEP + Taar4 YES B[a]P_1 chr10 24589872 24589872 C G UTR5 Med23 NA NA UTR5 Med23 NA NA UTR5 ENSMUSG00000019984 NA NA 10qA4 NA NA chr10 24589872 CGTxTGT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 251 0 0 12.318112 0.062069 0.02 1.923204 136 9 3866 226 60 60 0 0 CC 22.840542 76 0 2116 0 KEEP + Med23 NO B[a]P_1 chr10 26710574 26710574 A T intronic Lama2 NA NA intronic Lama2 NA NA intronic ENSMUSG00000019899 NA NA 10qA4 NA NA chr10 26710574 ACTxACT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.487421 0.490544 0.993634 37 0 0 8.46458 0.2 0.02 -0.201631 16 4 421 109 60 70 0 0 AA 3.608901 12 0 325 0 KEEP - Lama2 NO B[a]P_1 chr10 33818767 33818767 G A intronic Trappc3l NA NA intronic Bet3l NA NA intronic ENSMUSG00000071340 NA NA 10qB1 NA NA chr10 33818767 TGCxTTT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55282 0.552887 0.999879 56 0 0 10.856375 0.2 0.02 -0.219114 20 5 497 139 60 60 0 0 GG 6.614392 22 0 577 0 KEEP + Trappc3l NO B[a]P_1 chr10 35430660 35430660 C A intergenic "Frk(dist=1099624),Hs3st5(dist=795953)" NA NA intergenic "Frk(dist=1099624),Hs3st5(dist=795953)" NA NA exonic ENSMUSG00000063953 nonsynonymous SNV ENSMUST00000080898:c.G706T:p.D236Y 10qB1 "Score=0.996306;Name=No.8374,chr18:64607778" NA chr10 35430660 CATxCGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999995 0.999995 1 470 3 190 30.604149 0.142857 0.02 2.310463 96 16 2695 429 40 38 0 0 CC 59.249811 197 0 5555 0 KEEP NA Frk YES B[a]P_1 chr10 4705845 4705845 C A exonic Vip synonymous SNV NM_011702:c.G69T:p.S23S exonic Vip synonymous SNV uc007egk.1:c.G69T:p.S23S exonic ENSMUSG00000019772 synonymous SNV ENSMUST00000019906:c.G69T:p.S23S 10qA1 NA NA chr10 4705845 CAGxGAC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 142 0 0 19.497605 0.173077 0.02 1.337808 43 9 1095 256 60 60 0 0 CC 17.406547 58 0 1435 0 KEEP - Vip YES B[a]P_1 chr10 51203633 51203633 C A exonic Gp49a nonsynonymous SNV NM_008147:c.C760A:p.L254M exonic "Gp49a,Lilrb4" nonsynonymous SNV uc007faq.1:c.C475A:p.L159M exonic ENSMUSG00000089672 nonsynonymous SNV ENSMUST00000049800:c.C415A:p.L139M 10qB3 "Score=0.95581;Name=No.5868,chr10:51206266" NA chr10 51203633 CTCxTGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 251 0 3 94.209322 0.333333 0.02 2.338168 80 40 2279 1083 60 60 0 0 CC 27.504523 101 1 2865 27 KEEP + Gp49a YES B[a]P_1 chr10 53345730 53345730 T C exonic Mcm9 synonymous SNV NM_027830:c.A564G:p.R188R exonic Mcm9 synonymous SNV uc007fbs.1:c.A96G:p.R32R exonic ENSMUSG00000058298 synonymous SNV ENSMUST00000075540:c.A564G:p.R188R 10qB3 NA NA chr10 53345730 ATCxCTT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941738 0.941741 0.999997 86 0 0 7.075737 0.085106 0.02 -0.412155 43 4 1211 111 60 60 0 0 TT 8.707225 29 0 791 0 KEEP - Mcm9 NO B[a]P_1 chr10 53358018 53358018 T A exonic Fam184a nonsynonymous SNV NM_001081428:c.A3112T:p.S1038C exonic Fam184a nonsynonymous SNV uc007fbu.1:c.A3112T:p.S1038C exonic ENSMUSG00000019856 nonsynonymous SNV ENSMUST00000164393:c.A58T:p.S20C 10qB3 NA NA chr10 53358018 GACxTGT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877601 0.877708 0.999879 75 0 0 11.62601 0.15 0.02 -0.350726 34 6 938 161 60 60 0 0 TT 6.617347 22 0 613 0 KEEP - Fam184a NO B[a]P_1 chr10 53394920 53394920 C A intronic Fam184a NA NA intronic Fam184a NA NA intronic ENSMUSG00000019856 NA NA 10qB3 NA NA chr10 53394920 GACxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 71 0 0 31.159054 0.4 0.02 -0.262983 18 12 469 342 60 60 0 0 CC 9.017321 30 0 781 0 KEEP - Fam184a YES B[a]P_1 chr10 53639853 53639853 A G exonic Man1a synonymous SNV NM_008548:c.T1548C:p.R516R exonic Man1a synonymous SNV uc007fbw.1:c.T1548C:p.R516R exonic ENSMUSG00000003746 synonymous SNV ENSMUST00000003843:c.T1548C:p.R516R 10qB3 NA NA chr10 53639853 TGTxCGA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.639957 0.641347 0.997832 45 0 0 9.895768 0.178571 0.02 -0.244464 23 5 579 132 60 60 0 0 AA 4.809363 16 0 411 0 KEEP - Man1a NO B[a]P_1 chr10 53639854 53639854 C T exonic Man1a nonsynonymous SNV NM_008548:c.G1547A:p.R516H exonic Man1a nonsynonymous SNV uc007fbw.1:c.G1547A:p.R516H exonic ENSMUSG00000003746 nonsynonymous SNV ENSMUST00000003843:c.G1547A:p.R516H 10qB3 NA NA chr10 53639854 GTAxGAT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.581666 0.58293 0.997832 43 0 0 9.662344 0.192308 0.02 -0.227897 21 5 538 128 60 60 0 0 CC 4.787341 16 0 386 0 KEEP - Man1a NO B[a]P_1 chr10 57926930 57926930 G T exonic Ranbp2 nonsynonymous SNV NM_011240:c.G1555T:p.V519L exonic Ranbp2 nonsynonymous SNV uc007fdd.1:c.G1555T:p.V519L exonic ENSMUSG00000003226 nonsynonymous SNV ENSMUST00000003310:c.G1555T:p.V519L 10qB4 NA NA chr10 57926930 CCTxTGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 109 0 0 42.316764 0.321429 0.02 1.106322 38 18 1041 490 60 60 0 0 GG 12.329109 41 0 1139 0 KEEP + Ranbp2 YES B[a]P_1 chr10 58036370 58036370 A T exonic Ccdc138 nonsynonymous SNV NM_001162956:c.A1772T:p.N591I exonic Ccdc138 nonsynonymous SNV uc007fdf.2:c.A1772T:p.N591I exonic ENSMUSG00000038010 nonsynonymous SNV ENSMUST00000036576:c.A1772T:p.N591I 10qB4 NA NA chr10 58036370 GTAxCTC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 52 0 0 10.855109 0.2 0.02 -0.219215 20 5 550 139 60 60 0 0 AA 6.917767 23 0 634 0 KEEP + Ccdc138 NO B[a]P_1 chr10 59334308 59334308 C T intergenic "Micu1(dist=7438),Dnajb12(dist=8031)" NA NA intergenic "Cbara1(dist=7438),Dnajb12(dist=8031)" NA NA intergenic "ENSMUSG00000020111(dist=7428),ENSMUSG00000020109(dist=7996)" NA NA 10qB4 NA NA chr10 59334308 TGAxGTT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 284 1 6 8.98253 0.058824 0.02 2.231122 96 6 2281 160 60 20 0 0 CC 41.710369 139 0 3365 0 KEEP NA Micu1 NO B[a]P_1 chr10 59334313 59334313 A G intergenic "Micu1(dist=7443),Dnajb12(dist=8026)" NA NA intergenic "Cbara1(dist=7443),Dnajb12(dist=8026)" NA NA intergenic "ENSMUSG00000020111(dist=7433),ENSMUSG00000020109(dist=7991)" NA NA 10qB4 NA NA chr10 59334313 TTCxGAT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 275 1 0 10.368717 0.067961 0.02 2.425862 96 7 2725 181 60 43 0 0 AA 41.507613 138 0 3830 0 KEEP NA Micu1 NO B[a]P_1 chr10 60802031 60802031 C T exonic Pald1 synonymous SNV NM_013753:c.G2187A:p.V729V exonic X99384 synonymous SNV uc011xet.1:c.G2190A:p.V730V exonic ENSMUSG00000020092 synonymous SNV ENSMUST00000020289:c.G2187A:p.V729V 10qB4 NA NA chr10 60802031 ATCxACC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 194 0 0 108.553159 0.366667 0.02 2.535248 76 44 2075 1218 60 60 0 0 CC 15.620214 52 0 1435 0 KEEP - Pald1 NO B[a]P_1 chr10 61076966 61076966 G T exonic Npffr1 synonymous SNV NM_001177511:c.G270T:p.L90L exonic Npffr1 synonymous SNV uc007fgd.2:c.G270T:p.L90L exonic ENSMUSG00000020090 synonymous SNV ENSMUST00000020287:c.G270T:p.L90L 10qB4 NA NA chr10 61076966 CCTxCTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 263 0 0 95.57833 0.278912 0.02 2.101463 106 41 2953 1138 60 60 0 0 GG 24.037619 80 0 2229 0 KEEP + Npffr1 YES B[a]P_1 chr10 61330291 61330291 G T intronic Col13a1 NA NA intronic Col13a1 NA NA intronic ENSMUSG00000058806 NA NA 10qB4 NA NA chr10 61330291 TCAxTCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 240 0 0 30.830702 0.132231 0.02 2.232017 105 16 2805 437 60 60 0 0 GG 27.067764 90 0 2462 0 KEEP - Col13a1 YES B[a]P_1 chr10 62608920 62608920 G A exonic Mypn nonsynonymous SNV NM_182992:c.C1628T:p.S543L exonic Mypn nonsynonymous SNV uc007fjy.2:c.C1628T:p.S543L exonic ENSMUSG00000020067 nonsynonymous SNV ENSMUST00000095580:c.C1628T:p.S543L 10qB4 NA NA chr10 62608920 GCTxAGT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.755211 0.760887 0.99254 42 0 0 26.704713 0.34375 0.02 -0.289386 21 11 597 304 60 60 0 0 GG 2.707581 9 0 260 0 KEEP - Mypn NO B[a]P_1 chr10 74703880 74703880 A G exonic Specc1l nonsynonymous SNV NM_153406:c.A224G:p.K75R exonic "Specc1l,mKIAA0376" nonsynonymous SNV uc007fqd.1:c.A224G:p.K75R exonic ENSMUSG00000033444 nonsynonymous SNV ENSMUST00000040105:c.A275G:p.K92R 10qC1 NA NA chr10 74703880 CAAxGAA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 242 0 0 56.070673 0.210084 0.02 2.543536 94 25 2634 707 60 60 0 0 AA 26.16905 87 0 2434 0 KEEP + Specc1l NO B[a]P_1 chr10 74972329 74972329 G C intronic Gucd1 NA NA intronic 1110038D17Rik NA NA intronic ENSMUSG00000033416 NA NA 10qC1 NA NA chr10 74972329 CTGxCAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760405 0.760887 0.999366 58 0 0 10.294633 0.151515 0.02 -0.289322 28 5 766 140 60 60 0 0 GG 5.112244 17 0 463 0 KEEP - Gucd1 NO B[a]P_1 chr10 75039054 75039054 C A intronic Ggt1 NA NA intronic Ggt1 NA NA intronic "ENSMUSG00000006345,ENSMUSG00000092155" NA NA 10qC1 NA NA chr10 75039054 AGCxGTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963771 0.963774 0.999997 96 0 0 19.58302 0.176471 0.02 1.248482 42 9 992 256 60 60 0 0 CC 9.013862 30 0 753 0 KEEP + Ggt1 YES B[a]P_1 chr10 75259867 75259867 G C exonic Gstt1 nonsynonymous SNV NM_008185:c.C121G:p.L41V exonic Gstt1 nonsynonymous SNV uc007frc.2:c.C121G:p.L41V exonic ENSMUSG00000001663 nonsynonymous SNV ENSMUST00000120177:c.C97G:p.L33V 10qC1 NA NA chr10 75259867 TGAxGTG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877647 0.877708 0.999931 79 2 0 13.733579 0.2 0.02 -0.350641 32 8 895 186 60 60 0 0 GG 6.286774 24 1 656 8 KEEP - Gstt1 NO B[a]P_1 chr10 75379592 75379592 C T exonic Smarcb1 nonsynonymous SNV NM_001161853:c.G158A:p.R53Q exonic Smarcb1 nonsynonymous SNV uc007ftm.2:c.G158A:p.R53Q exonic ENSMUSG00000000902 nonsynonymous SNV ENSMUST00000000925:c.G158A:p.R53Q 10qC1 NA NA chr10 75379592 AGTxGCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.611079 0.612407 0.997832 50 0 0 13.457307 0.222222 0.02 -0.236496 21 6 525 168 60 60 0 0 CC 4.808871 16 0 422 0 KEEP - Smarcb1 NO B[a]P_1 chr10 75389977 75389977 G C exonic Mmp11 nonsynonymous SNV NM_008606:c.C525G:p.D175E exonic Mmp11 nonsynonymous SNV uc007fto.1:c.C525G:p.D175E exonic ENSMUSG00000000901 nonsynonymous SNV ENSMUST00000000924:c.C525G:p.D175E 10qC1 NA NA chr10 75389977 CCCxTCA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 295 2 0 20.165017 0.07362 0.02 3.747652 151 12 3606 330 60 60 0 0 GG 24.035678 80 0 1977 0 KEEP - Mmp11 NO B[a]P_1 chr10 75830039 75830039 G C intronic Pcnt NA NA intronic Pcnt NA NA intronic ENSMUSG00000001151 NA NA 10qC1 NA NA chr10 75830039 GAGxCAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739592 0.739671 0.999892 66 0 0 15.450916 0.225806 0.02 -0.280599 24 7 667 193 60 60 0 0 GG 6.916556 23 0 629 0 KEEP - Pcnt NO B[a]P_1 chr10 75952712 75952712 A T exonic Mcm3ap nonsynonymous SNV NM_019434:c.A3110T:p.H1037L exonic Mcm3ap nonsynonymous SNV uc007fup.1:c.A3110T:p.H1037L exonic ENSMUSG00000001150 nonsynonymous SNV ENSMUST00000001178:c.A3173T:p.H1058L 10qC1 NA NA chr10 75952712 TTCxTGT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 237 0 0 36.533853 0.140625 0.02 2.464874 110 18 2972 505 60 60 0 0 AA 25.821198 86 0 2255 0 KEEP + Mcm3ap NO B[a]P_1 chr10 76074480 76074480 C A intronic Col6a2 NA NA intronic Col6a2 NA NA intronic ENSMUSG00000020241 NA NA 10qC1 NA NA chr10 76074480 CCCxAAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 0 0 67.198472 0.227273 0.02 2.224146 102 30 2885 836 60 60 0 0 CC 34.88431 116 0 3269 0 KEEP - Col6a2 YES B[a]P_1 chr10 7640175 7640175 C A exonic Tab2 nonsynonymous SNV NM_138667:c.G340T:p.G114C exonic Tab2 nonsynonymous SNV uc007eir.2:c.G340T:p.G114C exonic ENSMUSG00000015755 nonsynonymous SNV ENSMUST00000130322:c.G118T:p.G40C 10qA1 NA NA chr10 7640175 CACxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 190 0 0 43.447167 0.192308 0.02 2.478955 84 20 2142 560 60 60 0 0 CC 18.337471 61 0 1601 0 KEEP - Tab2 YES B[a]P_1 chr10 76484603 76484603 A T ncRNA_exonic Gm10787 NA NA ncRNA_exonic AK143813 NA NA exonic ENSMUSG00000074919 nonsynonymous SNV ENSMUST00000099552:c.A96T:p.R32S 10qC1 NA NA chr10 76484603 AAGxGTG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992093 0.992094 0.999999 117 0 0 23.81879 0.190476 0.02 1.142928 51 12 1436 314 60 60 0 0 AA 10.793776 36 0 983 0 KEEP + Gm10787 NO B[a]P_1 chr10 77289152 77289152 C A exonic Krtap10-4 nonsynonymous SNV NM_001135991:c.G636T:p.Q212H exonic Krtap10-4 nonsynonymous SNV uc007fwd.2:c.G636T:p.Q212H ncRNA_exonic ENSMUSG00000069582 NA NA 10qC1 NA NA chr10 77289152 GGCxTGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.579219 0.58293 0.993634 42 0 0 10.860251 0.192308 0.02 -0.228006 21 5 596 140 60 60 0 0 CC 3.609503 12 0 335 0 KEEP - Krtap10-4 YES B[a]P_1 chr10 79343191 79343191 A G exonic Prtn3 nonsynonymous SNV NM_011178:c.A86G:p.K29R exonic Prtn3 nonsynonymous SNV uc007gah.1:c.A86G:p.K29R exonic ENSMUSG00000057729 nonsynonymous SNV ENSMUST00000006679:c.A86G:p.K29R 10qC1 NA NA chr10 79343191 CCAxGAT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 406 3 0 32.989721 0.088785 0.02 5.102263 195 19 5471 515 60 60 0 0 AA 45.713231 152 0 4209 0 KEEP + Prtn3 NO B[a]P_1 chr10 79438568 79438568 C G intronic Grin3b NA NA intronic Grin3b NA NA intronic ENSMUSG00000035745 NA NA 10qC1 NA NA chr10 79438568 CTTxTCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 379 0 0 32.796173 0.082251 0.02 4.75522 212 19 6074 522 60 60 0 0 CC 30.073021 100 0 2846 0 KEEP + Grin3b NO B[a]P_1 chr10 79462180 79462180 G C exonic Abca7 nonsynonymous SNV NM_013850:c.G625C:p.G209R exonic Abca7 nonsynonymous SNV uc007gba.1:c.G625C:p.G209R exonic ENSMUSG00000035722 nonsynonymous SNV ENSMUST00000043866:c.G625C:p.G209R 10qC1 NA NA chr10 79462180 CGAxGGT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 117 0 0 22.908922 0.171429 0.02 0.886196 58 12 1641 311 60 60 0 0 GG 11.430585 38 0 1070 0 KEEP + Abca7 NO B[a]P_1 chr10 79468782 79468782 G T exonic Abca7 nonsynonymous SNV NM_013850:c.G3003T:p.L1001F exonic Abca7 nonsynonymous SNV uc007gba.1:c.G3003T:p.L1001F exonic ENSMUSG00000035722 nonsynonymous SNV ENSMUST00000043866:c.G3003T:p.L1001F 10qC1 NA NA chr10 79468782 CTTxGGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 177 0 0 58.097143 0.274725 0.02 0.888481 66 25 1859 694 60 60 0 0 GG 19.852034 66 0 1854 0 KEEP + Abca7 YES B[a]P_1 chr10 79768939 79768939 C G exonic Apc2 nonsynonymous SNV NM_011789:c.C874G:p.R292G exonic Apc2 nonsynonymous SNV uc007gcp.1:c.C874G:p.R292G exonic ENSMUSG00000020135 nonsynonymous SNV ENSMUST00000020349:c.C874G:p.R292G 10qC1 NA NA chr10 79768939 GCGxGCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 153 2 0 34.077045 0.211268 0.02 1.163207 56 15 1364 428 60 60 0 0 CC 16.229087 54 0 1382 0 KEEP + Apc2 NO B[a]P_1 chr10 79768945 79768945 C A exonic Apc2 nonsynonymous SNV NM_011789:c.C880A:p.L294M exonic Apc2 nonsynonymous SNV uc007gcp.1:c.C880A:p.L294M exonic ENSMUSG00000020135 nonsynonymous SNV ENSMUST00000020349:c.C880A:p.L294M 10qC1 NA NA chr10 79768945 ACAxTGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 144 2 0 32.064591 0.211268 0.02 0.966033 56 15 1559 408 60 60 0 0 CC 15.34043 51 0 1428 0 KEEP + Apc2 YES B[a]P_1 chr10 79774386 79774386 C G exonic Apc2 nonsynonymous SNV NM_011789:c.C2441G:p.A814G exonic Apc2 nonsynonymous SNV uc007gcp.1:c.C2441G:p.A814G exonic ENSMUSG00000020135 nonsynonymous SNV ENSMUST00000020349:c.C2441G:p.A814G 10qC1 NA NA chr10 79774386 CTGxCCG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 168 0 0 25.816865 0.127451 0.02 2.541688 89 13 2499 365 60 60 0 0 CC 14.419602 48 0 1297 0 KEEP + Apc2 NO B[a]P_1 chr10 79785430 79785430 C T intronic Pcsk4 NA NA intronic Pcsk4 NA NA intronic ENSMUSG00000020131 NA NA 10qC1 NA NA chr10 79785430 GCTxCAA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9937 0.993703 0.999998 116 0 0 19.263877 0.153846 0.02 1.125252 55 10 1561 266 60 60 0 0 CC 9.917764 33 0 925 0 KEEP - Pcsk4 NO B[a]P_1 chr10 79844504 79844504 G C exonic Mex3d nonsynonymous SNV NM_198615:c.C1623G:p.C541W exonic Mex3d nonsynonymous SNV uc007gcz.1:c.C1623G:p.C541W exonic ENSMUSG00000048696 nonsynonymous SNV ENSMUST00000062946:c.C1623G:p.C541W 10qC1 NA NA chr10 79844504 GGGxCAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967338 0.967425 0.999909 83 1 0 25.203751 0.215686 0.02 1.23921 40 11 1134 315 60 60 0 0 GG 7.216944 24 0 644 0 KEEP - Mex3d NO B[a]P_1 chr10 80493742 80493742 C G exonic Slc39a3 nonsynonymous SNV NM_134135:c.G914C:p.G305A exonic Slc39a3 nonsynonymous SNV uc007gfq.1:c.G914C:p.G305A exonic ENSMUSG00000046822 nonsynonymous SNV ENSMUST00000168076:c.G914C:p.G305A 10qC1 NA NA chr10 80493742 TAGxCCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 192 1 0 51.205184 0.216981 0.02 2.657668 83 23 2296 643 60 60 0 0 CC 19.847171 66 0 1819 0 KEEP - Slc39a3 NO B[a]P_1 chr10 80809468 80809468 C A intronic Hmg20b NA NA intronic Hmg20b NA NA intronic ENSMUSG00000020232 NA NA 10qC1 NA NA chr10 80809468 CTCxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 232 0 0 50.267237 0.186047 0.02 2.358365 105 24 2931 657 60 60 0 0 CC 18.299672 61 0 1648 0 KEEP - Hmg20b YES B[a]P_1 chr10 80993880 80993880 C T exonic Gna11 synonymous SNV NM_010301:c.G846A:p.K282K exonic Gna11 synonymous SNV uc007gik.1:c.G240A:p.K80K exonic ENSMUSG00000034781 synonymous SNV ENSMUST00000043604:c.G846A:p.K282K 10qC1 NA NA chr10 80993880 GATxTTG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 198 1 0 41.03317 0.178571 0.02 2.301651 92 20 2621 543 60 60 0 0 CC 21.357951 71 0 2022 0 KEEP - Gna11 NO B[a]P_1 chr10 80993882 80993882 T G exonic Gna11 nonsynonymous SNV NM_010301:c.A844C:p.K282Q exonic Gna11 nonsynonymous SNV uc007gik.1:c.A238C:p.K80Q exonic ENSMUSG00000034781 nonsynonymous SNV ENSMUST00000043604:c.A844C:p.K282Q 10qC1 NA NA chr10 80993882 TCTxGTC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 203 1 0 42.879629 0.173913 0.02 2.373291 95 20 2622 564 60 60 0 0 TT 21.957034 73 0 2022 0 KEEP - Gna11 NO B[a]P_1 chr10 82955316 82955316 G T exonic Aldh1l2 nonsynonymous SNV NM_153543:c.C2620A:p.L874I exonic Aldh1l2 nonsynonymous SNV uc007gkh.2:c.C2620A:p.L874I exonic ENSMUSG00000020256 nonsynonymous SNV ENSMUST00000020497:c.C2620A:p.L874I 10qC1 NA NA chr10 82955316 CTAxCTT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 229 0 0 48.898472 0.212963 0.02 2.399998 85 23 2358 622 70 60 0 0 GG 26.449233 88 0 2450 0 KEEP - Aldh1l2 YES B[a]P_1 chr10 83017542 83017542 G T exonic A230046K03Rik nonsynonymous SNV NM_001033375:c.G499T:p.A167S exonic A230046K03Rik nonsynonymous SNV uc007gkj.1:c.G499T:p.A167S exonic ENSMUSG00000034560 nonsynonymous SNV ENSMUST00000038388:c.G499T:p.A167S 10qC1 NA NA chr10 83017542 GCTxCCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 229 2 0 18.547839 0.095238 0.02 2.461067 95 10 2605 281 60 60 0 0 GG 25.229515 84 0 2319 0 KEEP + A230046K03Rik YES B[a]P_1 chr10 87033032 87033032 C T exonic Pah synonymous SNV NM_008777:c.C786T:p.V262V exonic Pah synonymous SNV uc007gqt.2:c.C786T:p.V262V exonic ENSMUSG00000020051 synonymous SNV ENSMUST00000133293:c.C477T:p.V159V 10qC1 NA NA chr10 87033032 AGTxTTC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 206 0 0 29.843112 0.148515 0.02 2.309025 86 15 2439 411 60 60 0 0 CC 21.949409 73 0 2043 0 KEEP + Pah NO B[a]P_1 chr10 90384113 90384113 T A exonic Anks1b unknown UNKNOWN exonic Anks1b nonsynonymous SNV uc007gtd.1:c.T157A:p.Y53N exonic ENSMUSG00000058589 nonsynonymous SNV ENSMUST00000164897:c.T367A:p.Y123N 10qC2 NA NA chr10 90384113 CAGxACT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 166 0 0 15.377707 0.115942 0.02 1.09028 61 8 1626 223 60 60 0 0 TT 19.833025 66 0 1727 0 KEEP + Anks1b NO B[a]P_1 chr10 97143846 97143846 G C exonic Epyc nonsynonymous SNV NM_007884:c.G911C:p.S304T exonic Epyc nonsynonymous SNV uc007gxc.1:c.G911C:p.S304T exonic ENSMUSG00000019936 nonsynonymous SNV ENSMUST00000105285:c.G911C:p.S304T 10qC3 NA NA chr10 97143846 TCAxCAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 105 0 0 14.150894 0.162791 0.02 -0.376877 36 7 1004 191 60 60 0 0 GG 14.738802 49 0 1371 0 KEEP + Epyc NO B[a]P_1 chr11 100108777 100108777 A T exonic Krt16 nonsynonymous SNV NM_008470:c.T772A:p.L258M exonic Krt16 nonsynonymous SNV uc007lkq.1:c.T772A:p.L258M exonic ENSMUSG00000053797 nonsynonymous SNV ENSMUST00000007280:c.T772A:p.L258M 11qD NA NA chr11 100108777 TCAxGGC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926556 0.92664 0.999909 86 0 9 27.207212 0.266667 0.02 -0.393856 33 12 887 328 60 60 0 0 AA 8.720763 29 0 793 0 KEEP - Krt16 NO B[a]P_1 chr11 100128344 100128344 C A exonic Krt42 nonsynonymous SNV NM_212483:c.G607T:p.V203L exonic Krt42 nonsynonymous SNV uc007lku.1:c.G607T:p.V203L exonic ENSMUSG00000053654 nonsynonymous SNV ENSMUST00000017270:c.G607T:p.V203L 11qD NA NA chr11 100128344 GCAxCCG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 330 1 0 81.213521 0.191388 0.02 5.047025 169 40 4608 1064 60 60 0 0 CC 27.843921 93 0 2492 0 KEEP - Krt42 YES B[a]P_1 chr11 100214861 100214861 A C exonic Hap1 nonsynonymous SNV NM_010404:c.T925G:p.F309V exonic Hap1 nonsynonymous SNV uc007lkx.2:c.T925G:p.F309V exonic ENSMUSG00000006930 nonsynonymous SNV ENSMUST00000103124:c.T925G:p.F309V 11qD NA NA chr11 100214861 AGAxCTG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 199 0 0 33.009414 0.146341 0.02 2.303521 105 18 2868 466 60 60 0 0 AA 15.638653 52 0 1424 0 KEEP - Hap1 NO B[a]P_1 chr11 101027881 101027881 T A exonic Plekhh3 nonsynonymous SNV NM_146030:c.A863T:p.Q288L exonic Plekhh3 nonsynonymous SNV uc007lnq.1:c.A863T:p.Q288L exonic ENSMUSG00000035172 nonsynonymous SNV ENSMUST00000043397:c.A863T:p.Q288L 11qD NA NA chr11 101027881 CCCxGCA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.952421 0.954491 0.997832 73 0 0 46.343832 0.387755 0.02 -0.429361 30 19 814 515 60 60 0 0 TT 4.810314 16 0 421 0 KEEP - Plekhh3 NO B[a]P_1 chr11 101177749 101177749 C G UTR5 Psme3 NA NA UTR5 Psme3 NA NA UTR5 ENSMUSG00000078652 NA NA 11qD NA NA chr11 101177749 CGGxCCG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987942 0.987943 0.999999 118 0 0 23.329859 0.186441 0.02 1.169114 48 11 1336 304 60 60 0 0 CC 10.527064 35 0 967 0 KEEP + Psme3 NO B[a]P_1 chr11 101828269 101828269 G T exonic Sost nonsynonymous SNV NM_024449:c.C19A:p.P7T exonic Sost nonsynonymous SNV uc011yfn.1:c.C19A:p.P7T exonic ENSMUSG00000001494 nonsynonymous SNV ENSMUST00000001534:c.C19A:p.P7T 11qD NA NA chr11 101828269 ACGxGGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 237 0 0 107.42976 0.326087 0.02 2.278693 93 45 2623 1238 60 60 0 0 GG 18.647456 62 0 1715 0 KEEP - Sost YES B[a]P_1 chr11 101908499 101908499 C A exonic Cd300lg synonymous SNV NM_001160713:c.C708A:p.P236P exonic Cd300lg synonymous SNV uc007lqf.2:c.C708A:p.P236P exonic ENSMUSG00000017309 synonymous SNV ENSMUST00000017453:c.C456A:p.P152P 11qD NA NA chr11 101908499 GCCxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 43 0 0 17.536468 0.411765 0.02 -0.157842 10 7 282 192 60 60 0 0 CC 6.016398 20 0 570 0 KEEP + Cd300lg YES B[a]P_1 chr11 106186020 106186020 A T exonic Scn4a nonsynonymous SNV NM_133199:c.T3443A:p.L1148Q exonic Scn4a nonsynonymous SNV uc007lyu.1:c.T3443A:p.L1148Q exonic ENSMUSG00000001027 nonsynonymous SNV ENSMUST00000021056:c.T3443A:p.L1148Q 11qE1 NA NA chr11 106186020 CCCxGAA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 148 0 0 95.648665 0.406593 0.02 0.995496 54 37 1541 1047 60 60 0 0 AA 12.332769 41 0 1150 0 KEEP - Scn4a NO B[a]P_1 chr11 106283105 106283105 A G exonic Ern1 synonymous SNV NM_023913:c.T763C:p.L255L exonic Ern1 synonymous SNV uc007lyy.1:c.T763C:p.L255L exonic ENSMUSG00000020715 synonymous SNV ENSMUST00000001059:c.T763C:p.L255L 11qE1 NA NA chr11 106283105 TCAxGTA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 508 1 0 23.884072 0.053381 0.02 6.011923 266 15 7527 421 60 60 0 0 AA 51.695508 172 0 4752 0 KEEP - Ern1 NO B[a]P_1 chr11 109936901 109936901 C A exonic Abca8a nonsynonymous SNV NM_153145:c.G1219T:p.G407C exonic "Abca8a,abca8a" nonsynonymous SNV uc011ygu.1:c.G1219T:p.G407C exonic ENSMUSG00000041828 nonsynonymous SNV ENSMUST00000106664:c.G1135T:p.G379C 11qE1 NA NA chr11 109936901 CACxATC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 0.999999 90 0 0 25.273843 0.282051 0.02 -0.341986 28 11 783 301 60 60 0 0 CC 7.652843 35 1 989 27 KEEP - Abca8a YES B[a]P_1 chr11 114665721 114665721 G C exonic Gpr142 nonsynonymous SNV NM_181749:c.G197C:p.C66S exonic Gpr142 nonsynonymous SNV uc007mfu.1:c.G197C:p.C66S exonic ENSMUSG00000034677 nonsynonymous SNV ENSMUST00000045319:c.G197C:p.C66S 11qE2 NA NA chr11 114665721 CCTxTGT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 241 2 0 61.068284 0.21374 0.02 2.439046 103 28 2785 772 60 60 0 0 GG 26.169 87 0 2443 0 KEEP + Gpr142 NO B[a]P_1 chr11 114978313 114978313 C T exonic Cd300lf nonsynonymous SNV NM_001169153:c.G989A:p.R330K exonic Cd300lf nonsynonymous SNV uc011yhi.1:c.G866A:p.R289K exonic ENSMUSG00000047798 nonsynonymous SNV ENSMUST00000092455:c.G827A:p.R276K 11qE2 NA NA chr11 114978313 GGCxTCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 143 3 0 53.411929 0.309859 0.02 1.072649 49 22 1372 620 60 60 0 0 CC 14.438339 48 0 1347 0 KEEP - Cd300lf NO B[a]P_1 chr11 114978337 114978337 G T exonic Cd300lf nonsynonymous SNV NM_001169153:c.C965A:p.T322N exonic Cd300lf nonsynonymous SNV uc011yhi.1:c.C842A:p.T281N exonic ENSMUSG00000047798 nonsynonymous SNV ENSMUST00000092455:c.C803A:p.T268N 11qE2 NA NA chr11 114978337 GTGxTCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 154 3 0 37.389897 0.226667 0.02 0.940103 58 17 1559 467 60 60 0 0 GG 15.280531 51 0 1362 0 KEEP - Cd300lf YES B[a]P_1 chr11 115751777 115751777 A G intergenic "Llgl2(dist=34683),Recql5(dist=2132)" NA NA exonic Myo15b synonymous SNV uc007miw.1:c.A552G:p.A184A exonic ENSMUSG00000034427 synonymous SNV ENSMUST00000167507:c.A615G:p.A205A 11qE2 NA NA chr11 115751777 AGCxGTT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995081 0.995084 0.999997 110 0 0 10.238432 0.104478 0.02 1.108253 60 7 1650 166 60 60 0 0 AA 9.022929 30 0 830 0 KEEP + Llgl2 NO B[a]P_1 chr11 116089397 116089397 C A exonic Evpl nonsynonymous SNV NM_025276:c.G1865T:p.S622I exonic Evpl nonsynonymous SNV uc007mkp.1:c.G1865T:p.S622I exonic ENSMUSG00000034282 nonsynonymous SNV ENSMUST00000037007:c.G1865T:p.S622I 11qE2 NA NA chr11 116089397 AGGxTCT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 165 0 0 70.648072 0.28972 0.02 2.453468 76 31 2127 838 60 60 0 0 CC 15.607063 52 0 1446 0 KEEP - Evpl YES B[a]P_1 chr11 116112099 116112099 C G exonic Srp68 nonsynonymous SNV NM_146032:c.G1247C:p.R416P exonic Srp68 nonsynonymous SNV uc007mkq.1:c.G1247C:p.R416P exonic ENSMUSG00000020780 nonsynonymous SNV ENSMUST00000106425:c.G1133C:p.R378P 11qE2 NA NA chr11 116112099 GAGxGCT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 134 0 0 61.462078 0.324675 0.02 1.118829 52 25 1268 706 60 60 0 0 CC 11.683873 39 0 950 0 KEEP - Srp68 NO B[a]P_1 chr11 116518624 116518624 G A intronic Gm11744 NA NA ncRNA_intronic Prcd NA NA intronic ENSMUSG00000075410 NA NA 11qE2 NA NA chr11 116518624 CGTxAGA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 281 1 0 54.904179 0.166667 0.02 3.460582 135 27 3823 737 60 60 0 0 GG 23.464885 78 0 2239 0 KEEP + Gm11744 NO B[a]P_1 chr11 117472650 117472650 T C ncRNA_exonic 2900041M22Rik NA NA ncRNA_exonic 2900041M22Rik NA NA ncRNA_exonic ENSMUSG00000054418 NA NA 11qE2 NA NA chr11 117472650 CACxTCT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.998867 0.998867 1 186 4 0 8.362992 0.064935 0.02 1.020011 72 5 2014 140 60 60 0 0 TT 23.160239 77 0 2140 0 KEEP + 2900041M22Rik NO B[a]P_1 chr11 117867094 117867094 G A exonic Pgs1 nonsynonymous SNV NM_133757:c.G1282A:p.A428T exonic Pgs1 nonsynonymous SNV uc007mol.1:c.G760A:p.A254T exonic ENSMUSG00000017715 nonsynonymous SNV ENSMUST00000100185:c.G892A:p.A298T 11qE2 NA NA chr11 117867094 GCCxCCT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 204 2 0 98.529194 0.380531 0.02 2.402826 70 43 1762 1106 60 60 0 0 GG 11.636806 39 0 907 0 KEEP + Pgs1 NO B[a]P_1 chr11 119156008 119156008 C A exonic Eif4a3 nonsynonymous SNV NM_138669:c.G382T:p.A128S exonic Eif4a3 nonsynonymous SNV uc007mqj.1:c.G382T:p.A128S exonic ENSMUSG00000025580 nonsynonymous SNV ENSMUST00000106253:c.G319T:p.A107S 11qE2 NA NA chr11 119156008 GCGxGAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 155 0 0 35.781692 0.192771 0.02 1.057837 67 16 1560 458 60 60 0 0 CC 18.016105 60 0 1399 0 KEEP - Eif4a3 YES B[a]P_1 chr11 119195173 119195173 T A exonic Card14 nonsynonymous SNV NM_130886:c.T1711A:p.F571I exonic Card14 nonsynonymous SNV uc007mqk.1:c.T1711A:p.F571I exonic ENSMUSG00000013483 nonsynonymous SNV ENSMUST00000053245:c.T1711A:p.F571I 11qE2 NA NA chr11 119195173 GCGxTCC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 455 0 0 47.161979 0.106996 0.02 4.552508 217 26 5885 706 60 60 0 0 TT 43.598986 145 0 3939 0 KEEP + Card14 NO B[a]P_1 chr11 120674008 120674008 G A exonic Fasn synonymous SNV NM_007988:c.C4711T:p.L1571L exonic Fasn synonymous SNV uc007mut.1:c.C4711T:p.L1571L exonic ENSMUSG00000025153 synonymous SNV ENSMUST00000055655:c.C4711T:p.L1571L 11qE2 NA NA chr11 120674008 CCAxCAT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 191 0 0 114.167698 0.376 0.02 2.196601 78 47 2206 1277 60 60 0 0 GG 14.138249 47 0 1332 0 KEEP - Fasn NO B[a]P_1 chr11 120684152 120684152 C A exonic Fasn nonsynonymous SNV NM_007988:c.G6T:p.E2D exonic Fasn nonsynonymous SNV uc007mut.1:c.G6T:p.E2D exonic ENSMUSG00000025153 nonsynonymous SNV ENSMUST00000055655:c.G6T:p.E2D 11qE2 NA NA chr11 120684152 CTCxTCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 195 1 0 78.53314 0.340206 0.02 0.844681 64 33 1794 898 60 60 0 0 CC 23.752536 79 0 2237 0 KEEP - Fasn YES B[a]P_1 chr11 121314888 121314888 A T intronic Tbcd NA NA intronic Tbcd NA NA intronic ENSMUSG00000039230 NA NA 11qE2 NA NA chr11 121314888 CTGxGAG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 41 0 0 20.14634 0.444444 0.02 -0.157792 10 8 269 217 60 60 0 0 AA 6.014858 20 0 550 0 KEEP + Tbcd NO B[a]P_1 chr11 20596788 20596788 C G intronic Aftph NA NA intronic Aftph NA NA exonic ENSMUSG00000049659 synonymous SNV ENSMUST00000146722:c.G2277C:p.V759V 11qA3.1 NA NA chr11 20596788 ATCxACG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 106 0 0 37.872402 0.34 0.02 1.33792 33 17 924 437 60 60 0 0 CC 12.323776 41 0 1144 0 KEEP - Aftph NO B[a]P_1 chr11 23255098 23255098 G C exonic Usp34 nonsynonymous SNV NM_001190401:c.G1251C:p.Q417H exonic Usp34 nonsynonymous SNV uc011xsc.1:c.G579C:p.Q193H exonic ENSMUSG00000056342 nonsynonymous SNV ENSMUST00000070402:c.G519C:p.Q173H 11qA3.2 NA NA chr11 23255098 ACAxGTA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 49 2 0 12.608813 0.35 0.02 -0.175235 13 7 363 149 60 60 0 0 GG 7.219092 24 0 672 0 KEEP + Usp34 NO B[a]P_1 chr11 23482870 23482870 C A exonic 0610010F05Rik nonsynonymous SNV NM_027860:c.G1936T:p.D646Y exonic 0610010F05Rik nonsynonymous SNV uc007ifh.1:c.G1936T:p.D646Y exonic ENSMUSG00000042208 nonsynonymous SNV ENSMUST00000123909:c.G454T:p.D152Y 11qA3.2 NA NA chr11 23482870 CATxTTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 94 1 0 19.330825 0.257143 0.02 -0.306909 26 9 735 237 60 60 0 0 CC 13.829702 46 0 1293 0 KEEP - 0610010F05Rik YES B[a]P_1 chr11 3352531 3352531 G T ncRNA_exonic 8430429K09Rik NA NA ncRNA_exonic "8430429K09Rik,AK018450" NA NA ncRNA_exonic ENSMUSG00000034587 NA NA 11qA1 NA NA chr11 3352531 GATxGGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990961 0.990964 0.999997 98 0 0 44.472485 0.306452 0.02 1.15156 43 19 1213 520 60 60 0 0 GG 8.714375 29 0 814 0 KEEP + 8430429K09Rik YES B[a]P_1 chr11 3614438 3614438 C A intronic Osbp2 NA NA intronic Osbp2 NA NA intronic ENSMUSG00000020435 NA NA 11qA1 NA NA chr11 3614438 TGAxAAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999917 0.999919 0.999997 145 0 0 27.844124 0.147368 0.02 0.86232 81 14 2180 384 60 60 0 0 CC 9.625142 32 0 893 0 KEEP - Osbp2 YES B[a]P_1 chr11 4802299 4802299 C A intronic Thoc5 NA NA intronic Thoc5 NA NA UTR5 ENSMUSG00000034274 NA NA 11qA1 NA NA chr11 4802299 GTCxCAC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 2 0 17.190267 0.056122 0.02 3.171337 185 11 5134 303 60 60 0 0 CC 21.021231 70 0 1902 0 KEEP + Thoc5 YES B[a]P_1 chr11 48679350 48679350 T A exonic Irgm1 nonsynonymous SNV NM_008326:c.A1183T:p.I395F exonic Irgm1 nonsynonymous SNV uc007ipg.1:c.A1183T:p.I395F exonic ENSMUSG00000046879 nonsynonymous SNV ENSMUST00000049519:c.A1183T:p.I395F 11qB1.2 NA NA chr11 48679350 GGAxGTT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800148 0.800245 0.999879 65 0 0 9.358779 0.142857 0.02 -0.306858 30 5 806 132 60 60 0 0 TT 6.616004 22 0 591 0 KEEP - Irgm1 NO B[a]P_1 chr11 48729318 48729318 C A exonic Gm12185 stopgain SNV NM_001045540:c.G547T:p.E183X exonic Gm12185 stopgain SNV uc007ipj.1:c.G547T:p.E183X exonic ENSMUSG00000048852 stopgain SNV ENSMUST00000059930:c.G547T:p.E183X 11qB1.2 "Score=0.929308;Name=No.12938,chr11:48879416" NA chr11 48729318 TCTxTAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 149 0 0 26.780748 0.2 0.02 0.983642 56 14 1588 353 60 60 0 0 CC 19.251947 64 0 1828 0 KEEP - Gm12185 YES B[a]P_1 chr11 48833882 48833882 G T intergenic "Tgtp2(dist=28126),9930111J21Rik2(dist=17280)" NA NA intergenic "Gm12185(dist=28126),9930111J21Rik2(dist=17280)" NA NA exonic ENSMUSG00000069892 nonsynonymous SNV ENSMUST00000101295:c.C1225A:p.H409N 11qB1.2 "Score=0.995566;Name=No.12943,chr11:48759651" NA chr11 48833882 TGTxCAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 123 0 10 43.465872 0.333333 0.02 1.124043 36 18 978 498 60 60 0 0 GG 12.798128 46 1 1283 9 KEEP NA Tgtp2 YES B[a]P_1 chr11 48926495 48926495 G C exonic Olfr1396 synonymous SNV NM_146337:c.C765G:p.S255S exonic Olfr1396 synonymous SNV uc007ipr.1:c.C765G:p.S255S exonic ENSMUSG00000047511 synonymous SNV ENSMUST00000060398:c.C765G:p.S255S 11qB1.2 NA NA chr11 48926495 GTGxGAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 133 1 0 49.675581 0.333333 0.02 1.037957 50 25 1402 585 60 60 0 0 GG 14.738616 49 0 1364 0 KEEP + Olfr1396 NO B[a]P_1 chr11 48948378 48948378 G T exonic Olfr56 nonsynonymous SNV NM_010999:c.G587T:p.R196L exonic Olfr56 nonsynonymous SNV uc011xub.1:c.G683T:p.R228L exonic ENSMUSG00000040328 nonsynonymous SNV ENSMUST00000056759:c.G587T:p.R196L 11qB1.2 NA NA chr11 48948378 TCCxTAT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 342 0 0 151.755877 0.358824 0.02 3.694993 109 61 2679 1708 60 60 0 0 GG 41.349478 138 0 3407 0 KEEP + Olfr56 YES B[a]P_1 chr11 49502790 49502790 C A exonic Cnot6 nonsynonymous SNV NM_212484:c.G176T:p.S59I exonic Cnot6 nonsynonymous SNV uc007ira.1:c.G137T:p.S46I exonic ENSMUSG00000020362 nonsynonymous SNV ENSMUST00000020624:c.G176T:p.S59I 11qB1.2 NA NA chr11 49502790 TCAxTCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999997 89 1 0 51.700725 0.446809 0.02 -0.420324 26 21 711 557 60 60 0 0 CC 9.613145 32 0 878 0 KEEP - Cnot6 YES B[a]P_1 chr11 5016953 5016953 A G intronic Emid1 NA NA intronic Emid1 NA NA intronic ENSMUSG00000034164 NA NA 11qA1 NA NA chr11 5016953 GTAxGGA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.227586 0.229173 0.993072 30 0 0 21.813949 0.533333 0.02 -0.131541 7 8 198 225 60 70 2 0 AA 3.30116 11 0 289 0 KEEP - Emid1 NO B[a]P_1 chr11 51514708 51514708 C G exonic Sec24a synonymous SNV NM_175255:c.G2913C:p.S971S exonic Sec24a synonymous SNV uc011xuk.1:c.G468C:p.S156S exonic ENSMUSG00000036391 synonymous SNV ENSMUST00000109094:c.G390C:p.S130S 11qB1.3 NA NA chr11 51514708 CACxGAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.994422 0.994422 1 168 2 0 41.969401 0.287879 0.02 1.116971 47 19 1138 501 60 60 0 0 CC 21.900947 73 0 1851 0 KEEP - Sec24a NO B[a]P_1 chr11 57131284 57131284 C A exonic Gria1 nonsynonymous SNV NM_001113325:c.C2502A:p.S834R exonic Gria1 nonsynonymous SNV uc007izr.2:c.C2502A:p.S834R exonic ENSMUSG00000020524 nonsynonymous SNV ENSMUST00000036315:c.C2502A:p.S834R 11qB1.3 NA NA chr11 57131284 TAGxGAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 204 2 0 111.988345 0.466667 0.02 1.005798 48 42 1116 1189 60 60 0 0 CC 26.739807 89 0 2209 0 KEEP + Gria1 YES B[a]P_1 chr11 5798458 5798458 C G exonic Myl7 nonsynonymous SNV NM_022879:c.G88C:p.E30Q exonic Myl7 nonsynonymous SNV uc007hxl.1:c.G88C:p.E30Q exonic ENSMUSG00000020469 nonsynonymous SNV ENSMUST00000102921:c.G88C:p.E30Q 11qA1 NA NA chr11 5798458 GTTxGAA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 140 0 0 18.420664 0.147541 0.02 1.160703 52 9 1327 252 60 60 0 0 CC 16.830859 56 0 1455 0 KEEP - Myl7 NO B[a]P_1 chr11 5798459 5798459 G A exonic Myl7 synonymous SNV NM_022879:c.C87T:p.F29F exonic Myl7 synonymous SNV uc007hxl.1:c.C87T:p.F29F exonic ENSMUSG00000020469 synonymous SNV ENSMUST00000102921:c.C87T:p.F29F 11qA1 NA NA chr11 5798459 TTCxAAC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 139 0 0 17.921966 0.147541 0.02 1.258973 52 9 1330 247 60 60 0 0 GG 16.48594 55 0 1422 0 KEEP - Myl7 NO B[a]P_1 chr11 58130796 58130796 C A exonic Zfp672 nonsynonymous SNV NM_001256520:c.G200T:p.G67V exonic Zfp672 nonsynonymous SNV uc007jbc.2:c.G200T:p.G67V exonic ENSMUSG00000049755 nonsynonymous SNV ENSMUST00000064786:c.G200T:p.G67V 11qB1.3 NA NA chr11 58130796 TGGxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 208 0 0 42.332645 0.178571 0.02 2.408411 92 20 2550 556 60 60 0 0 CC 21.053566 70 0 1935 0 KEEP - Zfp672 YES B[a]P_1 chr11 58259836 58259836 C A exonic 4930504O13Rik synonymous SNV NM_207527:c.G312T:p.T104T exonic 4930504O13Rik synonymous SNV uc007jbn.2:c.G312T:p.T104T exonic ENSMUSG00000052642 synonymous SNV ENSMUST00000064614:c.G312T:p.T104T 11qB1.3 NA NA chr11 58259836 AGCxGTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 123 0 0 43.883921 0.3 0.02 1.267932 42 18 983 512 60 60 0 0 CC 14.067825 47 0 1084 0 KEEP - 4930504O13Rik YES B[a]P_1 chr11 58606463 58606463 G A exonic Fam183b synonymous SNV NM_001162878:c.C282T:p.F94F exonic Fam183b synonymous SNV uc011xvi.1:c.C282T:p.F94F exonic ENSMUSG00000049154 synonymous SNV ENSMUST00000060581:c.C282T:p.F94F 11qB1.3 NA NA chr11 58606463 TCTxAAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 254 2 0 20.367525 0.106796 0.02 2.389322 92 11 2618 303 60 60 0 0 GG 32.189189 107 0 3075 0 KEEP - Fam183b NO B[a]P_1 chr11 58867698 58867698 C G exonic Obscn synonymous SNV NM_199152:c.G13995C:p.G4665G exonic Obscn synonymous SNV uc011xvl.1:c.G13992C:p.G4664G exonic ENSMUSG00000061462 synonymous SNV ENSMUST00000081658:c.G5193C:p.G1731G 11qB1.3 NA NA chr11 58867698 CTGxCCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 342 48 3 27.689569 0.133333 0.02 3.710861 91 14 2496 389 60 60 0 1 CC 47.139119 157 0 4306 0 KEEP - Obscn NO B[a]P_1 chr11 58904218 58904218 G T exonic Obscn nonsynonymous SNV NM_199152:c.C5475A:p.S1825R exonic Obscn nonsynonymous SNV uc011xvl.1:c.C5475A:p.S1825R exonic ENSMUSG00000061462 nonsynonymous SNV ENSMUST00000052872:c.C5475A:p.S1825R 11qB1.3 NA NA chr11 58904218 GGCxCTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 267 38 63 25.368525 0.126214 0.02 2.560673 90 13 2115 361 60 37 1 0 GG 32.978783 110 0 2610 0 KEEP - Obscn YES B[a]P_1 chr11 58943098 58943098 T G exonic Obscn nonsynonymous SNV NM_199152:c.A2621C:p.K874T exonic Obscn nonsynonymous SNV uc011xvl.1:c.A2621C:p.K874T exonic ENSMUSG00000061462 nonsynonymous SNV ENSMUST00000052872:c.A2621C:p.K874T 11qB1.3 NA NA chr11 58943098 AGCxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 205 34 54 35.934767 0.253333 0.02 0.887253 56 19 1576 453 60 60 0 0 TT 28.262255 94 0 2577 0 KEEP - Obscn NO B[a]P_1 chr11 58945069 58945069 G C exonic Obscn nonsynonymous SNV NM_001171512:c.C2351G:p.A784G exonic Obscn nonsynonymous SNV uc007jdb.2:c.C2351G:p.A784G exonic ENSMUSG00000061462 nonsynonymous SNV ENSMUST00000020732:c.C2351G:p.A784G 11qB1.3 NA NA chr11 58945069 TAGxCAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954405 0.954491 0.999909 82 0 0 30.829715 0.270833 0.02 -0.429644 35 13 966 368 60 60 0 0 GG 7.218919 24 0 669 0 KEEP - Obscn NO B[a]P_1 chr11 59305617 59305617 C G exonic Zkscan17 nonsynonymous SNV NM_001130529:c.G946C:p.A316P exonic "Zkscan17,Znf496" nonsynonymous SNV uc007jea.2:c.G538C:p.A180P exonic ENSMUSG00000020472 nonsynonymous SNV ENSMUST00000013262:c.G1006C:p.A336P 11qB1.3 NA NA chr11 59305617 CACxTGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 387 1 0 135.881415 0.4 0.02 3.39018 96 64 2697 1522 60 60 0 0 CC 49.327952 164 0 4651 0 KEEP - Zkscan17 NO B[a]P_1 chr11 61124343 61124343 C A exonic Slc47a2 synonymous SNV NM_001033542:c.G951T:p.V317V exonic Slc47a2 synonymous SNV uc007jhg.1:c.G951T:p.V317V exonic ENSMUSG00000069855 synonymous SNV ENSMUST00000093029:c.G951T:p.V317V 11qB2 NA NA chr11 61124343 GGGxACC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92654 0.92664 0.999892 68 0 0 41.251461 0.377778 0.02 -0.394564 28 17 772 461 60 60 0 0 CC 6.910204 23 0 623 0 KEEP - Slc47a2 YES B[a]P_1 chr11 66739567 66739567 C G exonic Pirt synonymous SNV NM_178656:c.C201G:p.G67G exonic Pirt synonymous SNV uc007jln.1:c.C201G:p.G67G exonic ENSMUSG00000048070 synonymous SNV ENSMUST00000123434:c.C201G:p.G67G 11qB3 NA NA chr11 66739567 TGGxGTG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 239 0 0 91.124214 0.324786 0.02 2.35711 79 38 1923 1050 60 60 0 0 CC 26.682536 89 0 2239 0 KEEP - Pirt NO B[a]P_1 chr11 67025034 67025034 A G exonic Myh1 nonsynonymous SNV NM_030679:c.A2648G:p.K883R exonic Myh1 nonsynonymous SNV uc007jmg.1:c.A2648G:p.K883R exonic ENSMUSG00000056328 nonsynonymous SNV ENSMUST00000075734:c.A2648G:p.K883R 11qB3 NA NA chr11 67025034 AAAxGAT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 105 0 0 14.625714 0.152174 0.02 -0.403393 39 7 1102 198 60 60 0 0 AA 14.738244 49 0 1362 0 KEEP + Myh1 NO B[a]P_1 chr11 67031293 67031293 C A exonic Myh1 synonymous SNV NM_030679:c.C4032A:p.R1344R exonic Myh1 synonymous SNV uc007jmg.1:c.C4032A:p.R1344R exonic ENSMUSG00000056328 synonymous SNV ENSMUST00000075734:c.C4032A:p.R1344R 11qB3 NA NA chr11 67031293 CCGxCAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888779 0.888875 0.999892 68 0 0 22.381927 0.243902 0.02 -0.359527 31 10 865 275 60 60 0 0 CC 6.917516 23 0 630 0 KEEP + Myh1 YES B[a]P_1 chr11 67063505 67063505 G A exonic Myh4 nonsynonymous SNV NM_010855:c.G2064A:p.M688I exonic Myh4 nonsynonymous SNV uc007jmj.1:c.G2064A:p.M688I exonic ENSMUSG00000057003 nonsynonymous SNV ENSMUST00000170942:c.G2064A:p.M688I 11qB3 NA NA chr11 67063505 CATxGAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 142 1 0 67.03816 0.373333 0.02 1.037822 47 28 1295 752 60 60 0 0 GG 18.048615 60 0 1699 0 KEEP + Myh4 NO B[a]P_1 chr11 67158466 67158466 T G intronic Myh13 NA NA intronic Myh13 NA NA intronic ENSMUSG00000060180 NA NA 11qB3 NA NA chr11 67158466 TGCxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 160 0 0 17.752956 0.119565 0.02 0.790656 81 11 2276 271 60 60 0 0 TT 15.039654 50 0 1399 0 KEEP + Myh13 NO B[a]P_1 chr11 67478113 67478113 A G intronic Gas7 NA NA exonic Glp2r synonymous SNV uc007jmy.1:c.T717C:p.F239F exonic ENSMUSG00000049928 synonymous SNV ENSMUST00000021289:c.T717C:p.F239F 11qB3 NA NA chr11 67478113 GGCxAAG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918042 0.918171 0.99986 68 0 0 36.295063 0.340909 0.02 -0.385813 29 15 800 414 60 60 0 0 AA 5.714396 19 0 521 0 KEEP + Gas7 NO B[a]P_1 chr11 69214302 69214302 T C exonic Kdm6b nonsynonymous SNV NM_001017426:c.A4511G:p.K1504R exonic Kdm6b nonsynonymous SNV uc007jqd.1:c.A3047G:p.K1016R exonic ENSMUSG00000018476 nonsynonymous SNV ENSMUST00000094077:c.A4511G:p.K1504R 11qB3 NA NA chr11 69214302 TTCxTCA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 293 0 0 12.881057 0.053333 0.02 2.075248 142 8 3987 226 60 60 0 0 TT 28.876016 96 0 2679 0 KEEP - Kdm6b NO B[a]P_1 chr11 69560209 69560209 A G exonic Polr2a synonymous SNV NM_009089:c.T810C:p.A270A exonic Polr2a synonymous SNV uc007jrj.1:c.T810C:p.A270A exonic ENSMUSG00000005198 synonymous SNV ENSMUST00000058470:c.T810C:p.A270A 11qB3 NA NA chr11 69560209 TCGxGCA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 112 1 0 33.949885 0.283019 0.02 1.221987 38 15 1034 405 60 60 0 0 AA 14.736655 49 0 1347 0 KEEP - Polr2a NO B[a]P_1 chr11 69560210 69560210 G C exonic Polr2a nonsynonymous SNV NM_009089:c.C809G:p.A270G exonic Polr2a nonsynonymous SNV uc007jrj.1:c.C809G:p.A270G exonic ENSMUSG00000005198 nonsynonymous SNV ENSMUST00000058470:c.C809G:p.A270G 11qB3 NA NA chr11 69560210 CGAxCAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 114 1 0 37.532914 0.290909 0.02 1.204163 39 16 1096 443 60 60 0 0 GG 14.423324 48 0 1339 0 KEEP - Polr2a NO B[a]P_1 chr11 70332892 70332892 T A exonic Gltpd2 nonsynonymous SNV NM_146020:c.T173A:p.L58H exonic Gltpd2 nonsynonymous SNV uc007jvd.1:c.T173A:p.L58H exonic ENSMUSG00000046811 nonsynonymous SNV ENSMUST00000057685:c.T173A:p.L58H 11qB3 NA NA chr11 70332892 AACxCCC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.607319 0.612407 0.991692 55 0 0 26.719348 0.407407 0.02 -0.236751 16 11 455 294 60 60 0 0 TT 7.516961 25 0 684 0 KEEP + Gltpd2 NO B[a]P_1 chr11 70455287 70455287 G A UTR3 Gp1ba NA NA UTR3 Gp1ba NA NA UTR3 ENSMUSG00000050675 NA NA 11qB3 NA NA chr11 70455287 ACTxGGT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 87 0 0 17.049793 0.186047 0.02 -0.37705 35 8 972 222 60 60 0 0 GG 11.731361 39 0 1098 0 KEEP + Gp1ba NO B[a]P_1 chr11 72075075 72075075 C G intronic Slc13a5 NA NA UTR3 Slc13a5 NA NA intronic ENSMUSG00000020805 NA NA 11qB4 NA NA chr11 72075075 TCCxCTT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 182 0 0 36.389007 0.231579 0.02 0.756474 73 22 2047 482 60 60 0 0 CC 18.949925 63 0 1760 0 KEEP - Slc13a5 NO B[a]P_1 chr11 72801952 72801952 G T intronic Atp2a3 NA NA intronic Atp2a3 NA NA intronic ENSMUSG00000020788 NA NA 11qB4 NA NA chr11 72801952 GCTxTGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 214 0 0 72.431682 0.284404 0.02 2.33681 78 31 2163 859 60 60 0 0 GG 22.252257 74 0 2079 0 KEEP + Atp2a3 YES B[a]P_1 chr11 72951678 72951678 C G exonic Gsg2 nonsynonymous SNV NM_010353:c.G86C:p.G29A exonic Gsg2 nonsynonymous SNV uc007jzz.2:c.G86C:p.G29A exonic ENSMUSG00000050107 nonsynonymous SNV ENSMUST00000052140:c.G86C:p.G29A 11qB4 NA NA chr11 72951678 CCGxCAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351495 0.353947 0.993072 33 0 0 31.953983 0.631579 0.02 -0.166081 7 12 177 317 60 60 0 0 CC 3.302833 11 0 290 0 KEEP + Gsg2 NO B[a]P_1 chr11 74724763 74724763 T A intronic Srr NA NA intronic Srr NA NA intronic ENSMUSG00000001323 NA NA 11qB5 NA NA chr11 74724763 AAGxTAT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 188 0 0 23.250614 0.12766 0.02 0.862377 82 12 2208 331 60 60 0 0 TT 21.646837 72 0 1938 0 KEEP - Srr NO B[a]P_1 chr11 75895992 75895992 T G exonic Vps53 nonsynonymous SNV NM_026664:c.A1508C:p.K503T exonic Vps53 nonsynonymous SNV uc007kfb.1:c.A65C:p.K22T exonic ENSMUSG00000017288 nonsynonymous SNV ENSMUST00000167114:c.A677C:p.K226T 11qB5 NA NA chr11 75895992 TACxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987941 0.987943 0.999998 96 0 0 32.92714 0.288136 0.02 1.071698 42 17 1166 402 60 60 0 0 TT 9.925864 33 0 920 0 KEEP - Vps53 NO B[a]P_1 chr11 79474344 79474344 G T intronic Rab11fip4 NA NA intronic Rab11fip4 NA NA exonic ENSMUSG00000017639 nonsynonymous SNV ENSMUST00000092864:c.G16T:p.A6S 11qB5 NA NA chr11 79474344 CCGxCTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 163 4 0 62.769585 0.3375 0.02 1.092377 53 27 1434 721 60 60 0 0 GG 14.735703 49 0 1343 0 KEEP + Rab11fip4 YES B[a]P_1 chr11 80784997 80784997 T C exonic Asic2 synonymous SNV NM_001034013:c.A675G:p.Q225Q exonic Accn1 synonymous SNV uc007kml.1:c.A828G:p.Q276Q exonic ENSMUSG00000020704 synonymous SNV ENSMUST00000021045:c.A828G:p.Q276Q 11qB5 NA NA chr11 80784997 ATCxTGC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 233 0 0 30.413188 0.170732 0.02 1.074572 68 14 1881 400 60 60 0 0 TT 31.880705 106 0 2927 0 KEEP - Asic2 NO B[a]P_1 chr11 83028483 83028483 C A exonic Slfn3 synonymous SNV NM_011409:c.C1434A:p.L478L exonic Slfn3 synonymous SNV uc007kok.1:c.C1434A:p.L478L exonic ENSMUSG00000018986 synonymous SNV ENSMUST00000019130:c.C1434A:p.L478L 11qC NA NA chr11 83028483 TCTxGTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 162 0 0 33.077669 0.217391 0.02 1.090529 54 15 1372 416 60 60 0 0 CC 21.034845 70 0 1786 0 KEEP + Slfn3 YES B[a]P_1 chr11 83328666 83328666 C G intronic Gm11435 NA NA intronic Gm11435 NA NA intronic ENSMUSG00000018925 NA NA 11qC NA NA chr11 83328666 CTGxCTC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 112 0 0 29.229111 0.232143 0.02 1.204199 43 13 1185 362 60 60 0 0 CC 11.429495 38 0 1050 0 KEEP - Gm11435 NO B[a]P_1 chr11 86362779 86362779 G T intronic Tubd1 NA NA intronic Tubd1 NA NA intronic ENSMUSG00000020513 NA NA 11qC NA NA chr11 86362779 TACxCTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 114 0 0 37.317307 0.3125 0.02 -0.420634 33 15 807 431 60 60 0 0 GG 12.605688 42 0 1014 0 KEEP + Tubd1 YES B[a]P_1 chr11 8916271 8916271 C T exonic Sun3 nonsynonymous SNV NM_177576:c.G752A:p.R251K exonic Sun3 nonsynonymous SNV uc011xrl.1:c.G752A:p.R251K exonic ENSMUSG00000040985 nonsynonymous SNV ENSMUST00000102909:c.G752A:p.R251K 11qA1 NA NA chr11 8916271 ACTxTAA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 69 1 0 15.481058 0.241379 0.02 -0.254308 22 7 626 191 60 60 0 0 CC 8.116655 27 0 759 0 KEEP - Sun3 NO B[a]P_1 chr11 9302152 9302152 T C exonic Abca13 synonymous SNV NM_178259:c.T11041C:p.L3681L exonic Abca13 synonymous SNV uc007iaa.1:c.T11041C:p.L3681L exonic ENSMUSG00000004668 synonymous SNV ENSMUST00000042740:c.T11041C:p.L3681L 11qA1 NA NA chr11 9302152 TGCxTGC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 119 0 0 38.595488 0.307692 0.02 1.230458 36 16 1010 449 60 60 0 0 TT 13.837554 46 0 1305 0 KEEP + Abca13 NO B[a]P_1 chr11 94100152 94100152 C G exonic Wfikkn2 nonsynonymous SNV NM_181819:c.G476C:p.C159S exonic Wfikkn2 nonsynonymous SNV uc007kyg.2:c.G476C:p.C159S exonic ENSMUSG00000044177 nonsynonymous SNV ENSMUST00000061469:c.G476C:p.C159S 11qD NA NA chr11 94100152 GAGxAGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 229 0 0 116.935185 0.365079 0.02 2.482204 80 46 2214 1309 60 60 0 0 CC 23.441263 78 0 2152 0 KEEP - Wfikkn2 NO B[a]P_1 chr11 94900683 94900683 C A exonic Pdk2 synonymous SNV NM_133667:c.G240T:p.S80S exonic Pdk2 synonymous SNV uc007kzu.2:c.G240T:p.S80S exonic ENSMUSG00000038967 synonymous SNV ENSMUST00000038431:c.G240T:p.S80S 11qD NA NA chr11 94900683 CACxGAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 158 0 0 70.444674 0.325843 0.02 1.013331 60 29 1600 810 60 60 0 0 CC 14.131296 47 0 1257 0 KEEP - Pdk2 YES B[a]P_1 chr11 95141745 95141745 C A exonic Kat7 nonsynonymous SNV NM_177619:c.G1173T:p.Q391H exonic Myst2 nonsynonymous SNV uc007lad.2:c.G1173T:p.Q391H exonic ENSMUSG00000038909 nonsynonymous SNV ENSMUST00000103159:c.G1173T:p.Q391H 11qD NA NA chr11 95141745 GTAxTGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.712749 0.717315 0.993634 53 0 0 23.406168 0.322581 0.02 -0.271797 21 10 567 271 60 60 0 0 CC 3.609352 12 0 336 0 KEEP - Kat7 YES B[a]P_1 chr11 95161344 95161344 C A exonic Kat7 stopgain SNV NM_177619:c.G352T:p.E118X exonic Myst2 stopgain SNV uc007lad.2:c.G352T:p.E118X exonic ENSMUSG00000038909 stopgain SNV ENSMUST00000103159:c.G352T:p.E118X 11qD NA NA chr11 95161344 TTTxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835598 0.835716 0.999859 59 0 0 12.547287 0.162162 0.02 -0.324204 31 6 769 168 60 60 0 0 CC 5.344674 18 0 418 0 KEEP - Kat7 YES B[a]P_1 chr11 97026038 97026038 C A splicing Kpnb1(NM_008379:exon20:c.2353+1G>T) NA NA splicing "Kpnb1(uc007ldu.1:exon20:c.2353+1G>T,uc011yds.1:exon20:c.1297+1G>T)" NA NA splicing ENSMUSG00000001440(ENSMUST00000001479:exon20:c.2353+1G>T) NA NA 11qD NA NA chr11 97026038 CAAxGGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 137 0 0 33.665656 0.241935 0.02 1.151745 47 15 1201 414 60 60 0 0 CC 15.935443 53 0 1403 0 KEEP - Kpnb1 YES B[a]P_1 chr11 97379867 97379867 G C intronic Srcin1 NA NA intronic Srcin1 NA NA exonic ENSMUSG00000038453 nonsynonymous SNV ENSMUST00000107590:c.C3579G:p.C1193W 11qD NA NA chr11 97379867 ATAxCAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 271 0 0 22.292739 0.089041 0.02 2.01256 133 13 3717 351 60 60 0 0 GG 24.06608 80 0 2287 0 KEEP - Srcin1 NO B[a]P_1 chr11 97627749 97627749 C A exonic Cwc25 nonsynonymous SNV NM_026186:c.G8T:p.G3V exonic Cwc25 nonsynonymous SNV uc007ler.2:c.G8T:p.G3V exonic ENSMUSG00000018541 nonsynonymous SNV ENSMUST00000018685:c.G8T:p.G3V 11qD NA NA chr11 97627749 CCGxCTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 153 2 0 76.04562 0.428571 0.02 1.179716 40 30 1124 825 60 60 0 0 CC 16.843713 56 0 1555 0 KEEP - Cwc25 YES B[a]P_1 chr11 98534946 98534946 C T exonic Gsdma synonymous SNV NM_021347:c.C936T:p.H312H exonic Gsdma synonymous SNV uc007lgv.1:c.C936T:p.H312H exonic ENSMUSG00000017204 synonymous SNV ENSMUST00000017348:c.C936T:p.H312H 11qD NA NA chr11 98534946 ACAxGAA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 230 0 4 20.423402 0.105769 0.02 2.381356 93 11 2291 304 60 60 0 0 CC 25.826143 86 0 2137 0 KEEP + Gsdma NO B[a]P_1 chr11 99016321 99016321 G T UTR5 Ccr7 NA NA UTR5 Ccr7 NA NA UTR5 ENSMUSG00000037944 NA NA 11qD NA NA chr11 99016321 TCTxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 108 0 0 12.859534 0.1875 0.02 -0.280606 26 6 726 167 60 60 0 0 GG 15.578225 52 0 1435 0 KEEP - Ccr7 YES B[a]P_1 chr11 99496258 99496258 G T exonic Krtap4-2 synonymous SNV NM_026807:c.C81A:p.T27T exonic Krtap4-2 synonymous SNV uc007lji.1:c.C81A:p.T27T exonic ENSMUSG00000044649 synonymous SNV ENSMUST00000058987:c.C81A:p.T27T 11qD NA NA chr11 99496258 GCAxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 236 32 1 57.46654 0.294118 0.02 2.300394 60 25 1689 679 64 62 0 0 GG 33.990521 113 0 3187 0 KEEP - Krtap4-2 YES B[a]P_1 chr11 99995061 99995061 C A exonic Krt15 synonymous SNV NM_008469:c.G762T:p.V254V exonic Krt15 synonymous SNV uc007lkk.2:c.G762T:p.V254V exonic ENSMUSG00000054146 synonymous SNV ENSMUST00000007273:c.G762T:p.V254V 11qD NA NA chr11 99995061 TTCxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 182 3 0 82.944986 0.320755 0.02 2.461175 72 34 1992 956 60 60 0 0 CC 16.832858 56 0 1552 0 KEEP - Krt15 YES B[a]P_1 chr11 99995534 99995534 C A exonic Krt15 nonsynonymous SNV NM_008469:c.G672T:p.E224D exonic Krt15 nonsynonymous SNV uc007lkk.2:c.G672T:p.E224D exonic ENSMUSG00000054146 nonsynonymous SNV ENSMUST00000007273:c.G672T:p.E224D 11qD NA NA chr11 99995534 CTGxTCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 227 0 0 131.403905 0.455357 0.02 2.605389 61 51 1705 1406 60 60 0 0 CC 21.64232 72 0 2014 0 KEEP - Krt15 YES B[a]P_1 chr12 102185272 102185272 C A intronic Ccdc88c NA NA intronic Ccdc88c NA NA ncRNA_exonic ENSMUSG00000086626 NA NA 12qE NA NA chr12 102185272 CGTxCGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94174 0.941741 0.999999 91 3 0 48.626075 0.425532 0.02 -0.411799 27 20 753 530 60 60 0 0 CC 10.526113 35 0 987 0 KEEP - Ccdc88c YES B[a]P_1 chr12 103050359 103050359 C A intronic Fbln5 NA NA intronic Fbln5 NA NA intronic ENSMUSG00000021186 NA NA 12qE NA NA chr12 103050359 TCAxATA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 97 0 0 28.231364 0.272727 0.02 -0.385792 32 12 863 337 60 60 0 0 CC 11.129219 37 0 1037 0 KEEP - Fbln5 YES B[a]P_1 chr12 10396820 10396820 T G exonic Nt5c1b nonsynonymous SNV NM_027588:c.T1603G:p.L535V exonic Nt5c1b nonsynonymous SNV uc007nap.2:c.T1603G:p.L535V exonic ENSMUSG00000020622 nonsynonymous SNV ENSMUST00000002456:c.T1603G:p.L535V 12qA1.1 NA NA chr12 10396820 ATCxTAG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 113 0 0 21.495775 0.27027 0.02 -0.32443 27 10 759 261 60 60 0 0 TT 19.223292 64 0 1759 0 KEEP + Nt5c1b NO B[a]P_1 chr12 104321746 104321746 C A exonic Unc79 synonymous SNV NM_001081017:c.C2700A:p.S900S exonic Unc79 synonymous SNV uc007oux.2:c.C2169A:p.S723S exonic ENSMUSG00000021198 synonymous SNV ENSMUST00000085079:c.C2169A:p.S723S 12qE NA NA chr12 104321746 TTCxAGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 173 0 0 27.733231 0.255319 0.02 -0.412076 35 12 965 336 60 60 0 0 CC 28.57792 95 0 2706 0 KEEP + Unc79 YES B[a]P_1 chr12 106177738 106177738 A C intronic Syne3 NA NA intronic 4831426I19Rik NA NA intronic ENSMUSG00000054150 NA NA 12qE NA NA chr12 106177738 CCAxGCC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 76 0 0 13.538582 0.212121 0.02 -0.298074 26 7 712 176 60 60 0 0 AA 9.02342 30 0 835 0 KEEP - Syne3 NO B[a]P_1 chr12 109595724 109595724 C A exonic Cyp46a1 synonymous SNV NM_010010:c.C1008A:p.V336V exonic Cyp46a1 synonymous SNV uc007ozo.1:c.C1008A:p.V336V exonic ENSMUSG00000021259 synonymous SNV ENSMUST00000021684:c.C1008A:p.V336V 12qF1 NA NA chr12 109595724 TGTxGGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 154 0 0 83.36416 0.492537 0.02 1.107834 34 33 945 878 60 60 0 0 CC 17.707809 59 0 1543 0 KEEP + Cyp46a1 YES B[a]P_1 chr12 114011678 114011678 T G intergenic "Pld4(dist=4481),BC022687(dist=35508)" NA NA exonic Ahnak2 nonsynonymous SNV uc007pfe.1:c.A1752C:p.Q584H exonic ENSMUSG00000072812 nonsynonymous SNV ENSMUST00000101010:c.A1752C:p.Q584H 12qF1 NA NA chr12 114011678 AAGxTGG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 147 2 0 21.410729 0.212766 0.02 -0.412116 37 10 1016 272 60 60 0 0 TT 22.852977 76 0 2047 0 KEEP - Pld4 NO B[a]P_1 chr12 114151450 114151450 C G exonic Jag2 nonsynonymous SNV NM_010588:c.G2291C:p.G764A exonic Jag2 nonsynonymous SNV uc007pfl.1:c.G2291C:p.G764A exonic ENSMUSG00000002799 nonsynonymous SNV ENSMUST00000075827:c.G2291C:p.G764A 12qF1 NA NA chr12 114151450 GTGxCTC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 56 0 0 35.808463 0.424242 0.02 -0.289379 19 14 535 389 60 60 0 0 CC 5.413972 18 0 499 0 KEEP - Jag2 NO B[a]P_1 chr12 117158875 117158875 T A intergenic "NONE(dist=NONE),Zfp386(dist=127060)" NA NA ncRNA_intronic abParts NA NA intronic ENSMUSG00000076739 NA NA 12qF2 "Score=0.95157;Name=No.26359,chr12:117106384" NA chr12 117158875 CCTxACC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 600 49 2 18.612826 0.068966 0.02 3.109206 162 12 4284 318 60 60 0 0 TT 107.916542 359 0 9616 0 KEEP - NONE NO B[a]P_1 chr12 16902148 16902148 C T intronic Rock2 NA NA intronic Rock2 NA NA intronic ENSMUSG00000020580 NA NA 12qA1.1 NA NA chr12 16902148 GGGxTAG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 61 0 0 6.301542 0.25 0.02 -0.105212 9 3 247 78 60 60 0 0 CC 11.606443 39 0 1047 0 KEEP + Rock2 NO B[a]P_1 chr12 17006695 17006695 G C exonic Pqlc3 nonsynonymous SNV NM_001161111:c.C67G:p.P23A exonic Pqlc3 nonsynonymous SNV uc007nck.2:c.C67G:p.P23A exonic ENSMUSG00000045679 nonsynonymous SNV ENSMUST00000054536:c.C67G:p.P23A 12qA1.1 NA NA chr12 17006695 GCGxCAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 110 1 0 7.496711 0.090909 0.02 -0.385283 40 4 1066 114 60 60 0 0 GG 14.116685 47 0 1285 0 KEEP - Pqlc3 NO B[a]P_1 chr12 25683595 25683595 G T exonic Kidins220 nonsynonymous SNV NM_001081378:c.G925T:p.A309S exonic Kidins220 nonsynonymous SNV uc007nfc.1:c.G352T:p.A118S exonic ENSMUSG00000036333 nonsynonymous SNV ENSMUST00000066652:c.G925T:p.A309S 12qA1.3 NA NA chr12 25683595 TGGxCTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 102 0 0 23.226575 0.294118 0.02 -0.298149 24 10 679 274 60 60 0 0 GG 13.836771 46 0 1290 0 KEEP + Kidins220 YES B[a]P_1 chr12 30739973 30739973 C T UTR3 Tpo NA NA UTR3 Tpo NA NA UTR3 ENSMUSG00000020673 NA NA 12qA2 NA NA chr12 30739973 CTCxAAA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 155 0 0 10.884397 0.092308 0.02 1.125264 59 6 1646 167 60 60 0 0 CC 16.544874 55 0 1561 0 KEEP - Tpo NO B[a]P_1 chr12 32660774 32660774 G A intronic Prkar2b NA NA intronic Prkar2b NA NA intronic ENSMUSG00000002997 NA NA 12qA3 NA NA chr12 32660774 CCAxATG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 77 2 0 10.418776 0.166667 0.02 -0.263089 25 5 715 139 60 60 0 0 GG 11.430604 38 0 1087 0 KEEP - Prkar2b NO B[a]P_1 chr12 33832215 33832215 G A ncRNA_exonic F730043M19Rik NA NA ncRNA_exonic F730043M19Rik NA NA ncRNA_exonic ENSMUSG00000052125 NA NA 12qA3 NA NA chr12 33832215 CTGxGAC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 236 0 0 61.329614 0.309524 0.02 1.057109 58 26 1628 715 60 60 0 0 GG 32.354922 113 1 3069 14 KEEP - F730043M19Rik NO B[a]P_1 chr12 52705986 52705986 C A exonic Coch synonymous SNV NM_007728:c.C1626A:p.G542G exonic Coch synonymous SNV uc007nms.2:c.C1626A:p.G542G exonic ENSMUSG00000020953 synonymous SNV ENSMUST00000164782:c.C1626A:p.G542G 12qC1 NA NA chr12 52705986 AGGxATT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 101 2 0 20.347692 0.230769 0.02 -0.341963 30 9 825 252 60 60 0 0 CC 9.932936 43 1 1198 28 KEEP + Coch YES B[a]P_1 chr12 54038131 54038131 T G exonic Akap6 nonsynonymous SNV NM_198111:c.T2470G:p.L824V exonic Akap6 nonsynonymous SNV uc011ylu.1:c.T2461G:p.L821V exonic ENSMUSG00000061603 nonsynonymous SNV ENSMUST00000065911:c.T2470G:p.L824V 12qC1 NA NA chr12 54038131 AAGxTGA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 73 0 0 19.111132 0.32 0.02 -0.227982 17 8 466 221 60 60 0 0 TT 10.225491 34 0 931 0 KEEP + Akap6 NO B[a]P_1 chr12 70718056 70718056 C T exonic Sos2 nonsynonymous SNV NM_001135559:c.G1637A:p.S546N exonic Sos2 nonsynonymous SNV uc007nso.2:c.G1637A:p.S546N exonic ENSMUSG00000034801 nonsynonymous SNV ENSMUST00000035773:c.G1640A:p.S547N 12qC2 NA NA chr12 70718056 GTGxTGC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999998 85 0 0 13.687276 0.145833 0.02 -0.420924 41 7 1160 190 60 60 0 0 CC 9.927132 33 0 942 0 KEEP - Sos2 NO B[a]P_1 chr12 74147212 74147212 T G exonic Six1 nonsynonymous SNV NM_009189:c.A202C:p.K68Q exonic Six1 nonsynonymous SNV uc007nwa.2:c.A202C:p.K68Q exonic ENSMUSG00000051367 nonsynonymous SNV ENSMUST00000050029:c.A202C:p.K68Q 12qC3 NA NA chr12 74147212 TCTxGTA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 103 2 0 7.561472 0.105263 0.02 -0.333205 34 4 936 112 60 60 0 0 TT 16.842963 56 0 1539 0 KEEP - Six1 NO B[a]P_1 chr12 75367654 75367654 T A exonic Syt16 nonsynonymous SNV NM_172804:c.T1366A:p.C456S exonic Syt16 nonsynonymous SNV uc007nwu.1:c.T1366A:p.C456S exonic ENSMUSG00000044912 nonsynonymous SNV ENSMUST00000110447:c.T1174A:p.C392S 12qC3 NA NA chr12 75367654 AACxGTG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 232 0 0 31.517064 0.170455 0.02 1.013126 73 15 2038 418 60 60 0 0 TT 32.753479 109 0 2985 0 KEEP + Syt16 NO B[a]P_1 chr12 77714125 77714125 T G exonic Sptb nonsynonymous SNV NM_013675:c.A2987C:p.K996T exonic Spnb1 nonsynonymous SNV uc007nyo.1:c.A2987C:p.K996T exonic ENSMUSG00000021061 nonsynonymous SNV ENSMUST00000021458:c.A2987C:p.K996T 12qC3 NA NA chr12 77714125 AACxTCC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 169 0 0 19.742887 0.157143 0.02 1.278381 59 11 1675 277 60 60 0 0 TT 23.38499 78 0 2127 0 KEEP - Sptb NO B[a]P_1 chr12 83092908 83092908 G A exonic Pcnx nonsynonymous SNV NM_018814:c.G5977A:p.G1993S exonic Pcnx nonsynonymous SNV uc011yon.1:c.G802A:p.G268S exonic ENSMUSG00000021140 nonsynonymous SNV ENSMUST00000095565:c.G4210A:p.G1404S 12qD1 NA NA chr12 83092908 ATTxGCT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322803 0.322807 0.999988 49 0 0 11.267287 0.277778 0.02 -0.157844 13 5 369 135 60 60 0 0 GG 8.12214 27 0 768 0 KEEP + Pcnx NO B[a]P_1 chr12 85350775 85350775 C G exonic Acot1 nonsynonymous SNV NM_012006:c.C316G:p.L106V exonic Acot1 nonsynonymous SNV uc007oeb.1:c.C316G:p.L106V exonic ENSMUSG00000072949 nonsynonymous SNV ENSMUST00000085210:c.C67G:p.L23V 12qD1 NA NA chr12 85350775 GAGxTGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 178 0 0 39.023277 0.264706 0.02 1.0992 50 18 1389 475 60 60 0 0 CC 24.645922 82 0 2268 0 KEEP + Acot1 NO B[a]P_1 chr12 85379686 85379686 G T exonic Acot4 stopgain SNV NM_134247:c.G226T:p.E76X exonic Acot4 stopgain SNV uc007oed.1:c.G226T:p.E76X exonic ENSMUSG00000052392 stopgain SNV ENSMUST00000021652:c.G226T:p.E76X 12qD1 NA NA chr12 85379686 CTCxAGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 158 2 1 46.0999 0.296875 0.02 1.234116 45 19 1000 539 60 60 0 0 GG 21.916468 73 0 1760 0 KEEP + Acot4 YES B[a]P_1 chr12 85410625 85410625 G C exonic Acot5 nonsynonymous SNV NM_145444:c.G209C:p.G70A exonic Acot5 nonsynonymous SNV uc007oeh.1:c.G209C:p.G70A exonic ENSMUSG00000042540 nonsynonymous SNV ENSMUST00000046422:c.G209C:p.G70A 12qD1 NA NA chr12 85410625 GCGxCAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 85 0 17 8.096341 0.173913 0.02 -0.201685 19 4 534 108 36 36 0 0 GG 11.722767 39 0 1052 0 KEEP + Acot5 NO B[a]P_1 chr12 88498861 88498861 T C exonic Gstz1 nonsynonymous SNV NM_010363:c.T34C:p.F12L exonic Gstz1 nonsynonymous SNV uc007oim.1:c.T34C:p.F12L exonic ENSMUSG00000021033 nonsynonymous SNV ENSMUST00000063117:c.T34C:p.F12L 12qD2 NA NA chr12 88498861 TATxTCC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 142 4 0 19.525695 0.214286 0.02 -0.367928 33 9 883 247 60 60 0 0 TT 23.158682 77 0 2122 0 KEEP + Gstz1 NO B[a]P_1 chr12 89133885 89133885 A G exonic Gm2022 synonymous SNV NM_001177574:c.A72G:p.R24R exonic Gm2022 synonymous SNV uc011ypr.1:c.A72G:p.R24R exonic ENSMUSG00000071217 synonymous SNV ENSMUST00000095510:c.A72G:p.R24R 12qD2 "Score=0.974387;Name=No.26102,chr12:89486986" NA chr12 89133885 AAGxGAG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 624 2 293 10.654124 0.073171 0.02 0.976171 76 6 2120 171 36 29 0 0 AA 121.27541 414 1 11316 29 KEEP + Gm2022 NO B[a]P_1 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 90 2 0 10.224209 0.147059 0.02 -0.306911 29 5 803 140 60 36 0 0 CC 13.23384 44 0 1211 0 KEEP - Gm2042 YES B[a]P_1 chr13 100016076 100016076 C A exonic Zfp366 nonsynonymous SNV NM_001004149:c.C1791A:p.N597K exonic Zfp366 nonsynonymous SNV uc007rpl.1:c.C1791A:p.N597K exonic ENSMUSG00000050919 nonsynonymous SNV ENSMUST00000056558:c.C1791A:p.N597K 13qD1 NA NA chr13 100016076 GAAxGGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 141 0 0 10.561773 0.078947 0.02 1.020382 70 6 1777 168 60 60 0 0 CC 14.123586 47 0 1173 0 KEEP + Zfp366 YES B[a]P_1 chr13 100016382 100016382 G A exonic Zfp366 synonymous SNV NM_001004149:c.G2097A:p.E699E exonic Zfp366 synonymous SNV uc007rpl.1:c.G2097A:p.E699E exonic ENSMUSG00000050919 synonymous SNV ENSMUST00000056558:c.G2097A:p.E699E 13qD1 NA NA chr13 100016382 AGAxGAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 202 0 0 27.2267 0.153846 0.02 0.799379 77 14 2178 375 60 60 0 0 GG 23.763251 79 0 2221 0 KEEP + Zfp366 NO B[a]P_1 chr13 100016383 100016383 G C exonic Zfp366 nonsynonymous SNV NM_001004149:c.G2098C:p.E700Q exonic Zfp366 nonsynonymous SNV uc007rpl.1:c.G2098C:p.E700Q exonic ENSMUSG00000050919 nonsynonymous SNV ENSMUST00000056558:c.G2098C:p.E700Q 13qD1 NA NA chr13 100016383 GAGxAGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 200 0 0 28.906225 0.155556 0.02 1.005291 76 14 2131 391 60 60 0 0 GG 23.159303 77 0 2172 0 KEEP + Zfp366 NO B[a]P_1 chr13 100742254 100742254 A T intronic Mccc2 NA NA intronic Mccc2 NA NA intronic ENSMUSG00000021646 NA NA 13qD1 NA NA chr13 100742254 GCTxTCT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 127 2 0 22.047234 0.232558 0.02 -0.376995 33 10 873 274 60 60 0 0 AA 19.245353 64 0 1712 0 KEEP - Mccc2 NO B[a]P_1 chr13 101070369 101070369 A T exonic "Naip6,Naip7" nonsynonymous SNV NM_010871:c.T1600A:p.C534S exonic "Naip6,Naip7" nonsynonymous SNV uc011zdu.1:c.T346A:p.C116S exonic ENSMUSG00000078942 nonsynonymous SNV ENSMUST00000042220:c.T1600A:p.C534S 13qD1 "Score=0.971217;Name=No.34881,chr13:100982499" NA chr13 101070369 GACxCAC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 599 2 56 61.054335 0.114695 0.02 6.02127 247 32 6673 889 60 36 0 0 AA 76.952292 256 0 6790 0 KEEP - Naip6 NO B[a]P_1 chr13 103600636 103600636 C A exonic Mast4 nonsynonymous SNV NM_175171:c.G772T:p.D258Y exonic Mast4 nonsynonymous SNV uc007rsb.2:c.G772T:p.D258Y exonic ENSMUSG00000034751 nonsynonymous SNV ENSMUST00000167462:c.G196T:p.D66Y 13qD1 NA NA chr13 103600636 TGTxTTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 82 0 0 14.803261 0.25 0.02 -0.245524 21 7 598 183 60 60 0 0 CC 10.228511 34 0 981 0 KEEP - Mast4 YES B[a]P_1 chr13 113871461 113871461 C G exonic Cdc20b nonsynonymous SNV NM_001281487:c.C1205G:p.T402R intergenic "Gpx8(dist=34865),Gzma(dist=12574)" NA NA exonic ENSMUSG00000078926 nonsynonymous SNV ENSMUST00000109244:c.C1205G:p.T402R 13qD2.2 NA NA chr13 113871461 CCAxGGC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322767 0.322807 0.999879 44 0 0 6.312955 0.166667 0.02 -0.157675 15 3 344 84 60 60 0 0 CC 6.604533 22 0 505 0 KEEP NA Cdc20b NO B[a]P_1 chr13 120197560 120197560 C A intronic Nnt NA NA intronic Nnt NA NA intronic ENSMUSG00000025453 NA NA 13qD2.3 NA NA chr13 120197560 CTGxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 282 0 0 46.763779 0.228261 0.02 2.478463 71 21 2004 582 70 60 0 0 CC 37.496347 135 1 3785 29 KEEP - Nnt YES B[a]P_1 chr13 12282652 12282652 C T exonic Mtr nonsynonymous SNV NM_001081128:c.G3188A:p.S1063N exonic Mtr nonsynonymous SNV uc007plg.1:c.G179A:p.S60N exonic ENSMUSG00000021311 nonsynonymous SNV ENSMUST00000110618:c.G743A:p.S248N 13qA1 NA NA chr13 12282652 GTAxTAG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 106 1 0 12.811106 0.114754 0.02 1.05372 54 7 1499 189 60 60 0 0 CC 11.422341 38 0 1057 0 KEEP - Mtr NO B[a]P_1 chr13 14063056 14063056 G T exonic B3galnt2 nonsynonymous SNV NM_178640:c.G286T:p.G96C exonic B3galnt2 nonsynonymous SNV uc007pmm.1:c.G286T:p.G96C exonic ENSMUSG00000039242 nonsynonymous SNV ENSMUST00000099747:c.G286T:p.G96C 13qA1 NA NA chr13 14063056 ATAxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 237 0 0 29.813314 0.15 0.02 0.818326 85 15 2391 410 60 60 0 0 GG 28.577134 95 0 2699 0 KEEP + B3galnt2 YES B[a]P_1 chr13 18955892 18955892 C G intronic Vps41 NA NA intronic Vps41 NA NA intronic ENSMUSG00000041236 NA NA 13qA2 NA NA chr13 18955892 CTGxCCC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 251 2 0 30.173741 0.12931 0.02 2.364722 101 15 2789 424 60 60 0 0 CC 28.256047 94 0 2541 0 KEEP + Vps41 NO B[a]P_1 chr13 22127759 22127759 C G exonic Hist1h2bk nonsynonymous SNV NM_175665:c.C4G:p.P2A exonic Hist1h2bk nonsynonymous SNV uc007psb.1:c.C4G:p.P2A exonic ENSMUSG00000062727 nonsynonymous SNV ENSMUST00000110455:c.C4G:p.P2A 13qA3.1 NA NA chr13 22127759 ATGxCTG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 121 0 6 8.906905 0.09434 0.02 1.23071 48 5 1301 137 60 37 0 0 CC 15.30439 51 0 1375 0 KEEP + Hist1h2bk NO B[a]P_1 chr13 22818228 22818228 C G exonic Vmn1r207-ps nonsynonymous SNV NM_001166709:c.G264C:p.R88S exonic Vmn1r207-ps nonsynonymous SNV uc011yxb.1:c.G264C:p.R88S ncRNA_exonic ENSMUSG00000084136 NA NA 13qA3.1 "Score=0.968406;Name=No.32680,chr13:22851231" NA chr13 22818228 CACxCTC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 317 1 65 37.336167 0.217391 0.02 0.879954 72 20 2010 487 60 60 0 0 CC 50.208578 167 0 4592 0 KEEP - Vmn1r207-ps NO B[a]P_1 chr13 23255170 23255170 T G exonic Vmn1r219 nonsynonymous SNV NM_134238:c.T659G:p.L220R exonic Vmn1r219 nonsynonymous SNV uc007ptj.1:c.T659G:p.L220R exonic ENSMUSG00000061376 nonsynonymous SNV ENSMUST00000076180:c.T659G:p.L220R 13qA3.1 NA NA chr13 23255170 AGCxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 552 1 11 27.544726 0.094527 0.02 4.237698 182 19 5052 457 60 60 0 0 TT 83.009866 276 0 7633 0 KEEP + Vmn1r219 NO B[a]P_1 chr13 23324541 23324541 C A exonic Vmn1r222 nonsynonymous SNV NM_134240:c.G370T:p.A124S exonic Vmn1r222 nonsynonymous SNV uc007ptl.1:c.G370T:p.A124S exonic ENSMUSG00000061022 nonsynonymous SNV ENSMUST00000077116:c.G370T:p.A124S 13qA3.1 "Score=0.964736;Name=No.32670,chr13:22175859" NA chr13 23324541 ATGxATA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 424 2 0 68.923585 0.185393 0.02 3.525283 145 33 3999 902 60 60 0 0 CC 59.841123 199 0 5547 0 KEEP - Vmn1r222 YES B[a]P_1 chr13 23776130 23776130 C A exonic Hist1h2bc synonymous SNV NM_023422:c.C30A:p.A10A exonic "Gm9998,Hist1h2bc" nonsynonymous SNV uc007pum.1:c.G220T:p.G74C exonic ENSMUSG00000018102 synonymous SNV ENSMUST00000018246:c.C30A:p.A10A 13qA3.1 NA NA chr13 23776130 CGCxCCG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 223 8 34 18.335578 0.097087 0.02 2.487215 93 10 2621 278 60 37 0 0 CC 25.855016 86 0 2355 0 KEEP + Hist1h2bc YES B[a]P_1 chr13 27334415 27334415 C A intronic Prl3b1 NA NA intronic Prl3b1 NA NA intronic ENSMUSG00000038891 NA NA 13qA3.1 NA NA chr13 27334415 ACAxATT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941738 0.941741 0.999997 87 0 0 32.949821 0.297872 0.02 -0.412099 33 14 899 387 60 60 0 0 CC 8.423015 28 0 799 0 KEEP + Prl3b1 YES B[a]P_1 chr13 27526090 27526090 G C exonic Prl8a6 synonymous SNV NM_001271379:c.C360G:p.L120L exonic Prl8a6 synonymous SNV uc007pxq.1:c.C360G:p.L120L exonic ENSMUSG00000021345 synonymous SNV ENSMUST00000080762:c.C360G:p.L120L 13qA3.1 NA NA chr13 27526090 TGAxAGG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 88 2 0 19.930854 0.257143 0.02 -0.315676 26 9 737 243 60 60 0 0 GG 10.830102 36 0 1038 0 KEEP - Prl8a6 NO B[a]P_1 chr13 30963031 30963031 C G exonic Exoc2 nonsynonymous SNV NM_025588:c.G2011C:p.E671Q exonic Exoc2 nonsynonymous SNV uc007pzd.1:c.G2011C:p.E671Q exonic ENSMUSG00000021357 nonsynonymous SNV ENSMUST00000021785:c.G2011C:p.E671Q 13qA3.2 NA NA chr13 30963031 GTTxCAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 101 0 0 21.832824 0.227273 0.02 -0.385847 34 10 964 273 60 60 0 0 CC 12.332324 41 0 1151 0 KEEP - Exoc2 NO B[a]P_1 chr13 31900861 31900861 C T UTR3 Foxc1 NA NA UTR3 Foxc1 NA NA UTR3 ENSMUSG00000050295 NA NA 13qA3.2 NA NA chr13 31900861 CCTxACA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 182 1 0 9.520973 0.089552 0.02 1.009878 61 6 1722 154 60 60 0 0 CC 28.578533 95 0 2724 0 KEEP + Foxc1 NO B[a]P_1 chr13 32937593 32937593 C A exonic Serpinb1a stopgain SNV NM_025429:c.G514T:p.E172X exonic Serpinb1a stopgain SNV uc007pzu.1:c.G514T:p.E172X exonic ENSMUSG00000044734 stopgain SNV ENSMUST00000076352:c.G514T:p.E172X 13qA3.2 NA NA chr13 32937593 CCTxCCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 338 0 0 158.536921 0.403727 0.02 3.673962 96 65 2707 1747 60 60 0 0 CC 34.106964 123 1 3453 27 KEEP - Serpinb1a YES B[a]P_1 chr13 34838748 34838748 C T exonic Fam50b nonsynonymous SNV NM_138746:c.C337T:p.R113C exonic Fam50b nonsynonymous SNV uc007qbl.1:c.C337T:p.R113C exonic ENSMUSG00000038246 nonsynonymous SNV ENSMUST00000039605:c.C337T:p.R113C 13qA3.3 NA NA chr13 34838748 GAGxGCA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899232 0.899314 0.999909 74 0 0 52.647372 0.5 0.02 -0.367833 21 21 528 553 60 60 0 0 CC 7.141514 24 0 547 0 KEEP + Fam50b NO B[a]P_1 chr13 41198827 41198827 G T exonic Gcm2 nonsynonymous SNV NM_008104:c.C814A:p.P272T exonic Gcm2 nonsynonymous SNV uc007qey.1:c.C280A:p.P94T exonic ENSMUSG00000021362 nonsynonymous SNV ENSMUST00000021791:c.C814A:p.P272T 13qA3.3 NA NA chr13 41198827 AAGxTGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 85 2 0 14.837646 0.2 0.02 -0.306873 28 7 756 191 60 60 0 0 GG 13.817147 46 0 1230 0 KEEP - Gcm2 YES B[a]P_1 chr13 41723490 41723490 G T exonic Tmem170b nonsynonymous SNV NM_001163572:c.G241T:p.A81S exonic Tmem170b nonsynonymous SNV uc011yyr.1:c.G241T:p.A81S exonic ENSMUSG00000087370 nonsynonymous SNV ENSMUST00000129449:c.G241T:p.A81S 13qA4 NA NA chr13 41723490 CTGxCTT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 172 0 0 29.510694 0.145631 0.02 2.478971 88 15 2392 409 60 60 0 0 GG 16.839425 56 0 1513 0 KEEP + Tmem170b YES B[a]P_1 chr13 49818361 49818361 G T splicing Iars(NM_172015:exon25:c.2533-1G>T) NA NA splicing Iars(uc007qjv.2:exon25:c.2533-1G>T) NA NA splicing "ENSMUSG00000037851(ENSMUST00000165316:exon25:c.2533-1G>T,ENSMUST00000047363:exon25:c.2533-1G>T,ENSMUST00000164260:exon24:c.2533-1G>T)" NA NA 13qA5 NA NA chr13 49818361 CTAxTAT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 37 0 0 11.202752 0.25 0.02 -0.175358 15 5 406 137 60 60 0 0 GG 3.910653 13 0 370 0 KEEP + Iars YES B[a]P_1 chr13 53568066 53568066 G T exonic Msx2 nonsynonymous SNV NM_013601:c.C14A:p.T5N exonic Msx2 nonsynonymous SNV uc007qnw.1:c.C14A:p.T5N exonic ENSMUSG00000021469 nonsynonymous SNV ENSMUST00000021922:c.C14A:p.T5N 13qB1 NA NA chr13 53568066 TTAxTCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 93 0 0 15.730583 0.210526 0.02 -0.341777 30 8 790 204 60 60 0 0 GG 11.728903 39 0 1069 0 KEEP - Msx2 YES B[a]P_1 chr13 54309623 54309623 A G exonic Hrh2 nonsynonymous SNV NM_001010973:c.A248G:p.K83R exonic Hrh2 nonsynonymous SNV uc007qob.1:c.A248G:p.K83R exonic ENSMUSG00000034987 nonsynonymous SNV ENSMUST00000038101:c.A248G:p.K83R 13qB1 NA NA chr13 54309623 TCAxGTG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 213 0 0 15.308321 0.078261 0.02 2.275371 106 9 2963 247 60 60 0 0 AA 22.834364 76 0 2089 0 KEEP + Hrh2 NO B[a]P_1 chr13 54841171 54841171 G C exonic Gprin1 nonsynonymous SNV NM_012014:c.C650G:p.P217R exonic Gprin1 nonsynonymous SNV uc007qpb.1:c.C650G:p.P217R exonic ENSMUSG00000069227 nonsynonymous SNV ENSMUST00000135343:c.C650G:p.P217R 13qB1 NA NA chr13 54841171 CCAxGGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970819 0.97082 0.999999 95 3 0 13.865538 0.150943 0.02 1.03535 45 8 1249 198 60 60 0 0 GG 10.827327 36 0 1013 0 KEEP - Gprin1 NO B[a]P_1 chr13 55051061 55051061 C A exonic Unc5a synonymous SNV NM_153131:c.C39A:p.G13G exonic Unc5a synonymous SNV uc007qpp.1:c.C39A:p.G13G exonic ENSMUSG00000025876 synonymous SNV ENSMUST00000026994:c.C39A:p.G13G 13qB1 NA NA chr13 55051061 GGGxATA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 182 1 0 39.141224 0.204301 0.02 0.880166 74 19 2066 505 60 60 0 0 CC 17.445079 58 0 1621 0 KEEP + Unc5a YES B[a]P_1 chr13 56885193 56885193 C A exonic Trpc7 nonsynonymous SNV NM_012035:c.G2053T:p.V685L exonic Trpc7 nonsynonymous SNV uc007qtb.1:c.G2053T:p.V685L exonic ENSMUSG00000021541 nonsynonymous SNV ENSMUST00000173513:c.G1705T:p.V569L 13qB1 NA NA chr13 56885193 CCAxGTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 65 0 0 8.295147 0.148148 0.02 -0.236517 23 4 538 113 60 60 0 0 CC 8.107848 27 0 655 0 KEEP - Trpc7 YES B[a]P_1 chr13 58495514 58495514 A G exonic Hnrnpk nonsynonymous SNV NM_025279:c.T1015C:p.F339L exonic Hnrnpk nonsynonymous SNV uc007qtw.1:c.T808C:p.F270L exonic ENSMUSG00000021546 nonsynonymous SNV ENSMUST00000109849:c.T943C:p.F315L 13qB1 NA NA chr13 58495514 TGAxCCC A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 373 2 0 18.037053 0.073826 0.02 1.986143 138 11 3738 298 60 60 0 0 AA 50.217665 167 0 4542 0 KEEP - Hnrnpk NO B[a]P_1 chr13 58672883 58672883 C A exonic Slc28a3 nonsynonymous SNV NM_022317:c.G991T:p.G331W exonic Slc28a3 nonsynonymous SNV uc007qud.1:c.G991T:p.G331W exonic ENSMUSG00000021553 nonsynonymous SNV ENSMUST00000022036:c.G991T:p.G331W 13qB1 NA NA chr13 58672883 ACCxGAC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 113 0 0 40.334819 0.347826 0.02 -0.403076 30 16 709 456 60 60 0 0 CC 16.219148 54 0 1314 0 KEEP - Slc28a3 YES B[a]P_1 chr13 59750921 59750921 C A intronic Golm1 NA NA intronic Golm1 NA NA intronic ENSMUSG00000021556 NA NA 13qB2 NA NA chr13 59750921 ACTxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 198 0 0 78.070069 0.317757 0.02 2.354369 73 34 2061 909 60 60 0 0 CC 18.344693 61 0 1723 0 KEEP - Golm1 YES B[a]P_1 chr13 59844971 59844971 C A intergenic "4930528D03Rik(dist=6140),Isca1(dist=11805)" NA NA intergenic "AK077008(dist=6140),Isca1(dist=11805)" NA NA upstream ENSMUSG00000051054 NA NA 13qB2 NA NA chr13 59844971 AGAxCAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 146 0 0 27.150101 0.159091 0.02 0.825837 74 14 2018 372 60 60 0 0 CC 12.331113 41 0 1137 0 KEEP NA 4930528D03Rik YES B[a]P_1 chr13 60863240 60863240 G T UTR3 Dapk1 NA NA UTR3 Dapk1 NA NA UTR3 ENSMUSG00000021559 NA NA 13qB2 NA NA chr13 60863240 TTGxCTT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 145 0 0 62.070856 0.298851 0.02 0.932665 61 26 1674 727 60 60 0 0 GG 11.708831 39 0 1053 0 KEEP + Dapk1 YES B[a]P_1 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 215 0 6 7.368082 0.1 0.02 -0.368301 36 4 1007 111 60 23 0 0 CC 38.806443 129 0 3718 0 KEEP NA BC052688 YES B[a]P_1 chr13 62489262 62489262 C G intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "ENSMUSG00000089002(dist=2850),ENSMUSG00000055228(dist=66421)" NA NA 13qB3 "Score=0.952824;Name=No.33007,chr13:61865461" NA chr13 62489262 TGTxCAA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 277 0 1 10.076157 0.065934 0.02 0.799341 85 6 2405 168 60 29 0 0 CC 41.211337 137 0 3888 0 KEEP NA Gm3604 NO B[a]P_1 chr13 62556434 62556434 G C exonic Zfp935 nonsynonymous SNV NM_001136496:c.C250G:p.P84A exonic Zfp935 nonsynonymous SNV uc007qww.2:c.C250G:p.P84A exonic ENSMUSG00000055228 nonsynonymous SNV ENSMUST00000092528:c.C247G:p.P83A 13qB3 "Score=0.93849;Name=No.33273,chr13:62734158" NA chr13 62556434 GAGxTGA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 149 4 0 53.810371 0.34375 0.02 1.134008 42 22 1174 612 60 60 0 0 GG 18.945135 63 0 1747 0 KEEP - Zfp935 NO B[a]P_1 chr13 66816412 66816412 G C intergenic "2410141K09Rik(dist=274358),Uqcrb(dist=185145)" NA NA ncRNA_intronic AK049212 NA NA intergenic "ENSMUSG00000078996(dist=28521),ENSMUSG00000090632(dist=135867)" NA NA 13qB3 "Score=0.982334;Name=No.34308,chr13:66500822" NA chr13 66816412 CCAxCAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970693 0.97082 0.999869 101 0 3 9.228295 0.104167 0.02 1.230444 43 5 1225 138 60 43 0 0 GG 6.317424 21 0 602 0 KEEP - 2410141K09Rik NO B[a]P_1 chr13 73930054 73930054 G T exonic Slc12a7 synonymous SNV NM_011390:c.G732T:p.A244A exonic Slc12a7 synonymous SNV uc007rea.1:c.G819T:p.A273A exonic ENSMUSG00000017756 synonymous SNV ENSMUST00000017900:c.G732T:p.A244A 13qC1 NA NA chr13 73930054 GGCxGCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 441 0 0 252.954418 0.411765 0.02 5.061979 140 98 3529 2762 60 60 1 0 GG 43.499661 145 0 3631 0 KEEP + Slc12a7 YES B[a]P_1 chr13 81584305 81584305 C G exonic Gpr98 nonsynonymous SNV NM_054053:c.G12561C:p.W4187C exonic Gpr98 nonsynonymous SNV uc007rhn.1:c.G12561C:p.W4187C exonic ENSMUSG00000069170 nonsynonymous SNV ENSMUST00000095585:c.G12561C:p.W4187C 13qC3 NA NA chr13 81584305 CTTxCAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 437 4 0 208.735351 0.437838 0.02 3.562164 104 81 2948 2252 60 60 0 0 CC 52.935506 176 0 5003 0 KEEP - Gpr98 NO B[a]P_1 chr13 8671619 8671619 C A intronic Adarb2 NA NA ncRNA_intronic Adar3 NA NA intronic ENSMUSG00000052551 NA NA 13qA1 NA NA chr13 8671619 GCGxATC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 100 0 0 12.221742 0.139535 0.02 -0.377057 37 6 1022 169 60 60 0 0 CC 13.534718 45 0 1246 0 KEEP + Adarb2 YES B[a]P_1 chr13 95174007 95174007 G T exonic Ap3b1 nonsynonymous SNV NM_009680:c.G481T:p.D161Y exonic Ap3b1 nonsynonymous SNV uc007rlv.2:c.G481T:p.D161Y exonic ENSMUSG00000021686 nonsynonymous SNV ENSMUST00000022196:c.G481T:p.D161Y 13qD1 NA NA chr13 95174007 GCTxACC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 76 0 0 24.87363 0.282051 0.02 -0.341984 28 11 789 297 60 60 0 0 GG 8.724153 29 0 832 0 KEEP + Ap3b1 YES B[a]P_1 chr13 96212094 96212094 A C exonic Crhbp nonsynonymous SNV NM_198408:c.T473G:p.M158R exonic Crhbp nonsynonymous SNV uc007rmk.2:c.T473G:p.M158R exonic ENSMUSG00000021680 nonsynonymous SNV ENSMUST00000045583:c.T473G:p.M158R 13qD1 NA NA chr13 96212094 ACCxTGG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 213 0 0 42.631066 0.213483 0.02 1.013141 70 19 1909 536 60 60 0 0 AA 24.35073 81 0 2164 0 KEEP - Crhbp NO B[a]P_1 chr13 96374686 96374686 C A exonic F2r stopgain SNV NM_010169:c.G295T:p.G99X exonic F2r stopgain SNV uc007rmn.1:c.G295T:p.G99X exonic ENSMUSG00000048376 stopgain SNV ENSMUST00000059193:c.G295T:p.G99X 13qD1 NA NA chr13 96374686 ATCxGGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976737 0.976865 0.999869 85 0 0 21.456922 0.181818 0.02 1.213408 45 10 1070 280 60 60 0 0 CC 6.30468 21 0 504 0 KEEP - F2r YES B[a]P_1 chr13 96374687 96374687 G A exonic F2r synonymous SNV NM_010169:c.C294T:p.S98S exonic F2r synonymous SNV uc007rmn.1:c.C294T:p.S98S exonic ENSMUSG00000048376 synonymous SNV ENSMUST00000059193:c.C294T:p.S98S 13qD1 NA NA chr13 96374687 TCCxGAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973838 0.973965 0.999869 84 0 0 19.23463 0.166667 0.02 1.221784 45 9 1221 255 60 60 0 0 GG 6.297358 21 0 534 0 KEEP - F2r NO B[a]P_1 chr13 97716591 97716591 G T exonic Gcnt4 nonsynonymous SNV NM_001166065:c.G439T:p.V147F exonic Gcnt4 nonsynonymous SNV uc007rno.2:c.G439T:p.V147F exonic ENSMUSG00000091387 nonsynonymous SNV ENSMUST00000171324:c.G439T:p.V147F 13qD1 NA NA chr13 97716591 ATGxTTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 202 0 0 52.582331 0.210526 0.02 2.382131 90 24 2451 666 60 60 0 0 GG 22.510517 75 0 2023 0 KEEP + Gcnt4 YES B[a]P_1 chr13 98700845 98700845 C T exonic Arhgef28 nonsynonymous SNV NM_012026:c.G4526A:p.R1509Q exonic "Rgnef,mKIAA1998" nonsynonymous SNV uc007roj.1:c.G485A:p.R162Q exonic ENSMUSG00000021662 nonsynonymous SNV ENSMUST00000022166:c.G4523A:p.R1508Q 13qD1 NA NA chr13 98700845 ATCxGCT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.87362 0.877708 0.995343 57 0 0 40.745741 0.4 0.02 -0.350606 24 16 601 448 60 60 0 0 CC 4.204415 14 0 333 0 KEEP - Arhgef28 NO B[a]P_1 chr13 99625320 99625320 C A exonic Tnpo1 stopgain SNV NM_001048267:c.G1978T:p.E660X exonic Tnpo1 stopgain SNV uc007rpg.1:c.G1351T:p.E451X exonic ENSMUSG00000009470 stopgain SNV ENSMUST00000109399:c.G1978T:p.E660X 13qD1 NA NA chr13 99625320 GCTxAAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 147 1 0 24.26178 0.179104 0.02 1.108125 55 12 1537 322 60 60 0 0 CC 18.017415 60 0 1658 0 KEEP - Tnpo1 YES B[a]P_1 chr14 121877405 121877405 C G intronic Slc15a1 NA NA intronic Slc15a1 NA NA intronic ENSMUSG00000025557 NA NA 14qE5 NA NA chr14 121877405 AACxACA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 110 1 0 7.263177 0.08 0.02 -0.43842 46 4 1274 114 60 60 0 0 CC 16.244242 54 0 1539 0 KEEP - Slc15a1 NO B[a]P_1 chr14 19075795 19075795 C A intergenic "Nr1d2(dist=4175),Rpl15(dist=24542)" NA NA intergenic "Nr1d2(dist=4175),Rpl15(dist=24542)" NA NA downstream ENSMUSG00000090838 NA NA 14qA2 "Score=0.95341;Name=No.55997,chr7:39005691" NA chr14 19075795 CATxAAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995041 0.995084 0.999957 96 0 0 38.636428 0.253731 0.02 1.009973 50 17 1372 470 60 60 0 0 CC 7.822023 26 0 755 0 KEEP NA Nr1d2 YES B[a]P_1 chr14 21563769 21563769 T G intronic Camk2g NA NA intronic Camk2g NA NA intronic ENSMUSG00000021820 NA NA 14qA3 NA NA chr14 21563769 AACxCAG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.99986 46 0 0 9.267147 0.227273 0.02 -0.192888 17 5 490 120 60 60 0 0 TT 5.694974 19 0 512 0 KEEP - Camk2g NO B[a]P_1 chr14 26408885 26408885 G T ncRNA_exonic 4931406H21Rik NA NA ncRNA_exonic 4931406H21Rik NA NA intronic ENSMUSG00000007817 NA NA 14qA3 NA NA chr14 26408885 TAGxAGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9937 0.993703 0.999997 103 2 0 23.940867 0.184615 0.02 1.028194 53 12 1460 317 60 60 0 0 GG 8.422806 28 0 796 0 KEEP + 4931406H21Rik YES B[a]P_1 chr14 30943012 30943012 C T intronic Cacna1d NA NA exonic Cacna1d nonsynonymous SNV uc007suv.1:c.G1498A:p.A500T exonic ENSMUSG00000015968 nonsynonymous SNV ENSMUST00000057695:c.G1501A:p.A501T 14qB NA NA chr14 30943012 CCGxGCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 195 0 0 35.270855 0.195402 0.02 0.835575 70 17 1711 458 60 60 0 0 CC 24.331076 81 0 1966 0 KEEP - Cacna1d NO B[a]P_1 chr14 30997316 30997316 G T exonic Cacna1d nonsynonymous SNV NM_001083616:c.C680A:p.S227Y exonic Cacna1d nonsynonymous SNV uc007suu.1:c.C680A:p.S227Y exonic ENSMUSG00000015968 nonsynonymous SNV ENSMUST00000057695:c.C680A:p.S227Y 14qB NA NA chr14 30997316 CTAxAGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196285 0.196312 0.999863 40 0 0 9.072548 0.285714 0.02 -0.122699 10 4 275 108 60 60 0 0 GG 6.016608 20 0 574 0 KEEP - Cacna1d YES B[a]P_1 chr14 33022784 33022784 A C exonic Parg nonsynonymous SNV NM_011960:c.A1174C:p.S392R exonic Parg nonsynonymous SNV uc007syo.2:c.A925C:p.S309R exonic ENSMUSG00000021911 nonsynonymous SNV ENSMUST00000022470:c.A1174C:p.S392R 14qB NA NA chr14 33022784 AGAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 70 0 0 6.350109 0.15625 0.02 -0.279592 27 5 761 99 60 60 0 0 AA 10.227132 34 0 952 0 KEEP + Parg NO B[a]P_1 chr14 41815775 41815775 C A exonic Fam213a nonsynonymous SNV NM_027464:c.G187T:p.G63W exonic 5730469M10Rik nonsynonymous SNV uc007tci.1:c.G187T:p.G63W exonic ENSMUSG00000021792 nonsynonymous SNV ENSMUST00000153830:c.G220T:p.G74W 14qB NA NA chr14 41815775 CCCxGTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 196 0 0 12.830431 0.084337 0.02 0.96814 76 7 1853 199 60 60 0 0 CC 22.474898 75 0 1872 0 KEEP - Fam213a YES B[a]P_1 chr14 41927984 41927984 G A intronic Mat1a NA NA intronic Mat1a NA NA intronic ENSMUSG00000037798 NA NA 14qB NA NA chr14 41927984 CCTxAGT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 134 0 0 102.59554 0.590909 0.02 1.018663 27 39 757 1034 60 60 0 0 GG 16.837704 56 0 1602 0 KEEP + Mat1a NO B[a]P_1 chr14 41966863 41966863 C A intronic Mbl1 NA NA intronic Mbl1 NA NA intronic ENSMUSG00000037780 NA NA 14qB NA NA chr14 41966863 TCCxCTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 143 0 0 49.593432 0.323529 0.02 1.099196 46 22 1312 577 60 60 0 0 CC 16.844482 56 0 1565 0 KEEP + Mbl1 YES B[a]P_1 chr14 42094265 42094265 T C intergenic "Sftpd(dist=95778),1700091H14Rik(dist=574292)" NA NA intergenic "Sftpd(dist=95778),AK047145(dist=967878)" NA NA exonic ENSMUSG00000091110 unknown UNKNOWN 14qB "Score=0.972619;Name=No.50652,chr14:43090806" NA chr14 42094265 GGAxTCC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 230 3 93 29.138474 0.352941 0.02 -0.298112 22 12 592 330 52 52 0 0 TT 36.090744 120 0 3291 0 KEEP NA Sftpd NO B[a]P_1 chr14 45125742 45125742 A C UTR3 BC061237 NA NA UTR3 BC061237 NA NA UTR3 ENSMUSG00000072145 NA NA 14qC1 "Score=0.951391;Name=No.51380,chr14:42555615" NA chr14 45125742 AAAxGGC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 496 2 29 75.071441 0.313559 0.02 1.956823 81 37 2275 893 60 60 0 0 AA 84.779448 282 0 7822 0 KEEP + BC061237 NO B[a]P_1 chr14 50980649 50980649 T G exonic Tlr11 nonsynonymous SNV NM_205819:c.T416G:p.F139C exonic Tlr11 nonsynonymous SNV uc007tkz.1:c.T401G:p.F134C exonic ENSMUSG00000051969 nonsynonymous SNV ENSMUST00000063570:c.T401G:p.F134C 14qC1 NA NA chr14 50980649 TTTxTGA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 137 2 0 10.035671 0.081081 0.02 1.046347 68 6 1876 162 60 60 0 0 TT 14.436711 48 0 1321 0 KEEP + Tlr11 NO B[a]P_1 chr14 51330509 51330509 T C exonic Olfr748 nonsynonymous SNV NM_001011837:c.T503C:p.F168S exonic Olfr748 nonsynonymous SNV uc007tlk.1:c.T503C:p.F168S exonic ENSMUSG00000060084 nonsynonymous SNV ENSMUST00000073561:c.T503C:p.F168S 14qC1 NA NA chr14 51330509 CTTxCTG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 413 3 17 12.963699 0.051613 0.02 3.726637 147 8 4068 228 60 60 0 0 TT 58.324309 194 0 5385 0 KEEP + Olfr748 NO B[a]P_1 chr14 53389795 53389795 G T intergenic "Olfr1507(dist=274425),A430107P09Rik(dist=895820)" NA NA ncRNA_exonic X56719 NA NA exonic ENSMUSG00000076769 nonsynonymous SNV ENSMUST00000103578:c.G69T:p.K23N 14qC2 "Score=0.969859;Name=No.53366,chr14:54000000" NA chr14 53389795 GAAxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 259 0 87 10.05529 0.074468 0.02 0.7734 87 7 2433 174 36 36 0 0 GG 36.690199 122 0 3417 0 KEEP + Olfr1507 YES B[a]P_1 chr14 54295926 54295926 G T intergenic "A430107P09Rik(dist=7916),Dad1(dist=559234)" NA NA ncRNA_intronic "M34214,TCRA,TCR[alpha],Tca" NA NA intronic ENSMUSG00000076850 NA NA 14qC2 "Score=0.964541;Name=No.53384,chr14:53842659" NA chr14 54295926 ACAxCTT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 935 7 185 129.769889 0.198697 0.02 7.234121 246 61 6836 1671 55 54 0 0 GG 126.157051 423 1 11761 9 KEEP + A430107P09Rik YES B[a]P_1 chr14 56592574 56592574 C G exonic Cma2 nonsynonymous SNV NM_001024714:c.C653G:p.S218C exonic Cma2 nonsynonymous SNV uc007ubg.1:c.C653G:p.S218C exonic ENSMUSG00000068289 nonsynonymous SNV ENSMUST00000169737:c.C443G:p.S148C 14qC3 NA NA chr14 56592574 CTTxTGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 356 6 55 9.6759 0.058824 0.02 2.496957 96 6 2710 167 60 60 0 0 CC 58.037963 193 0 5499 0 KEEP + Cma2 NO B[a]P_1 chr14 63225111 63225111 G A exonic Fam124a synonymous SNV NM_001243857:c.G1230A:p.L410L intergenic "AK200207(dist=18950),Serpine3(dist=57393)" NA NA exonic ENSMUSG00000035184 synonymous SNV ENSMUST00000166454:c.G1134A:p.L378L 14qD1 NA NA chr14 63225111 GCTxTCC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976863 0.976865 0.999998 103 0 0 20.153845 0.181818 0.02 1.115143 45 10 1209 267 60 60 0 0 GG 10.226369 34 0 942 0 KEEP NA Fam124a NO B[a]P_1 chr14 67691053 67691053 G A UTR5 Ppp2r2a NA NA UTR5 "Ppp2r2a,Ppp2r2d" NA NA exonic ENSMUSG00000022052 nonsynonymous SNV ENSMUST00000089230:c.C67T:p.P23S 14qD1 NA NA chr14 67691053 GGGxGGA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 128 0 0 42.475576 0.28125 0.02 1.232341 46 18 1301 504 60 60 0 0 GG 13.576493 50 1 1372 13 KEEP - Ppp2r2a NO B[a]P_1 chr14 70448173 70448173 G T exonic Pebp4 synonymous SNV NM_028560:c.G477T:p.S159S exonic Pebp4 synonymous SNV uc007una.1:c.G477T:p.S159S exonic ENSMUSG00000022085 synonymous SNV ENSMUST00000022678:c.G477T:p.S159S 14qD2 NA NA chr14 70448173 CTCxCCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 362 8 0 77.308305 0.255814 0.02 2.456628 96 33 2382 934 60 60 0 0 GG 48.66448 162 0 3994 0 KEEP + Pebp4 YES B[a]P_1 chr14 7365243 7365243 G T intergenic "LOC100861615(dist=245519),Gm10406(dist=473386)" NA NA intergenic "Gm10408(dist=121151),Gm2897(dist=54915)" NA NA intronic "ENSMUSG00000056940,ENSMUSG00000090627" NA NA 14qA1 "Score=0.981875;Name=No.43838,chr14:3956019" NA chr14 7365243 GAGxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1100 11 213 12.153917 0.03719 0.02 4.267347 233 9 6526 245 36 34 0 0 GG 168.385531 566 1 15781 15 KEEP NA LOC100861615 YES B[a]P_1 chr14 78032425 78032425 T C exonic Enox1 synonymous SNV NM_001253759:c.T1317C:p.A439A exonic Enox1 synonymous SNV uc007urz.1:c.T1317C:p.A439A exonic ENSMUSG00000022012 synonymous SNV ENSMUST00000072013:c.T1317C:p.A439A 14qD3 NA NA chr14 78032425 TGCxGGT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 94 0 0 39.700699 0.475 0.02 -0.350294 21 19 587 427 60 60 0 0 TT 9.064012 34 1 913 10 KEEP + Enox1 NO B[a]P_1 chr14 8741068 8741068 G T exonic Flnb nonsynonymous SNV NM_134080:c.G3931T:p.V1311L exonic Flnb nonsynonymous SNV uc007sek.1:c.G3931T:p.V1311L exonic ENSMUSG00000025278 nonsynonymous SNV ENSMUST00000052678:c.G3931T:p.V1311L 14qA1 NA NA chr14 8741068 GATxTGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 47 0 0 8.520311 0.166667 0.02 -0.21868 20 4 541 113 70 60 0 0 GG 5.104647 17 0 471 0 KEEP + Flnb YES B[a]P_1 chr14 8816608 8816608 T A exonic Dnase1l3 nonsynonymous SNV NM_007870:c.A317T:p.Q106L exonic Dnase1l3 nonsynonymous SNV uc007sem.1:c.A317T:p.Q106L exonic ENSMUSG00000025279 nonsynonymous SNV ENSMUST00000026315:c.A317T:p.Q106L 14qA1 NA NA chr14 8816608 TACxGCT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 166 0 0 20.38096 0.138889 0.02 1.063838 62 10 1749 282 60 60 0 0 TT 19.249504 64 0 1766 0 KEEP - Dnase1l3 NO B[a]P_1 chr15 100003695 100003695 G T exonic Dip2b stopgain SNV NM_172819:c.G1273T:p.G425X exonic Dip2b stopgain SNV uc007xqr.2:c.G1273T:p.G425X exonic ENSMUSG00000023026 stopgain SNV ENSMUST00000023768:c.G1276T:p.G426X 15qF1 NA NA chr15 100003695 CACxGAC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 158 0 0 26.89691 0.154762 0.02 0.958912 71 13 1866 364 60 60 0 0 GG 13.226918 44 0 1159 0 KEEP + Dip2b YES B[a]P_1 chr15 100045758 100045758 G C exonic Dip2b nonsynonymous SNV NM_172819:c.G3920C:p.G1307A exonic Dip2b nonsynonymous SNV uc007xqr.2:c.G3920C:p.G1307A exonic ENSMUSG00000023026 nonsynonymous SNV ENSMUST00000023768:c.G3923C:p.G1308A 15qF1 NA NA chr15 100045758 CGGxCGT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 236 1 0 57.872986 0.194444 0.02 2.119155 116 28 3223 753 60 60 0 0 GG 19.242352 64 0 1743 0 KEEP + Dip2b NO B[a]P_1 chr15 100493005 100493005 G A exonic Bin2 synonymous SNV NM_001270537:c.C105T:p.T35T intergenic "BC141885(dist=11855),Cela1(dist=11848)" NA NA exonic ENSMUSG00000075411 synonymous SNV ENSMUST00000100198:c.C105T:p.T35T 15qF1 NA NA chr15 100493005 TACxGTT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 81 0 0 23.6847 0.285714 0.02 -0.306604 25 10 600 280 60 60 0 0 GG 9.615619 32 0 803 0 KEEP NA Bin2 NO B[a]P_1 chr15 101306701 101306701 G T exonic Krt86 nonsynonymous SNV NM_010667:c.G709T:p.D237Y exonic Krt86 nonsynonymous SNV uc007xti.1:c.G709T:p.D237Y exonic ENSMUSG00000067614 nonsynonymous SNV ENSMUST00000088049:c.G709T:p.D237Y 15qF2 "Score=0.957977;Name=No.57829,chr15:101317394" NA chr15 101306701 ACCxACT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 179 0 0 41.629635 0.206522 0.02 0.987203 73 19 1868 529 60 60 0 0 GG 16.230599 54 0 1418 0 KEEP + Krt86 YES B[a]P_1 chr15 101475091 101475091 T A ncRNA_exonic Gm5478 NA NA ncRNA_exonic Gm5478 NA NA intergenic "ENSMUSG00000064232(dist=16472),ENSMUSG00000023041(dist=31374)" NA NA 15qF2 NA NA chr15 101475091 TGTxGCG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 267 1 0 95.310282 0.288732 0.02 2.34242 101 41 2763 1128 60 60 0 0 TT 27.669363 92 0 2510 0 KEEP - Gm5478 NO B[a]P_1 chr15 102797594 102797594 A G exonic Hoxc10 synonymous SNV NM_010462:c.A306G:p.P102P exonic Hoxc10 synonymous SNV uc007xwz.1:c.A216G:p.P72P exonic ENSMUSG00000022484 synonymous SNV ENSMUST00000001699:c.A306G:p.P102P 15qF3 NA NA chr15 102797594 CCCxCCT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 164 0 0 34.582374 0.174757 0.02 2.29186 85 18 2270 467 60 60 0 0 AA 13.524427 45 0 1191 0 KEEP + Hoxc10 NO B[a]P_1 chr15 103450330 103450330 T A intergenic "Glycam1(dist=54821),NONE(dist=NONE)" NA NA intergenic "Glycam1(dist=54821),NONE(dist=NONE)" NA NA intergenic "ENSMUSG00000022491(dist=54821),NONE(dist=NONE)" NA NA 15qF3 "Score=0.982651;Name=No.58920,chr2:156215839" NA chr15 103450330 TTCxTTT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 142 2 0 13.942827 0.127273 0.02 1.311217 48 7 1355 197 60 60 0 0 TT 21.948811 73 0 2030 0 KEEP NA Glycam1 NO B[a]P_1 chr15 10469595 10469595 T G intronic Ttc23l NA NA intronic Ttc23l NA NA intronic ENSMUSG00000022249 NA NA 15qA1 NA NA chr15 10469595 ACCxTGA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 55 0 0 12.785113 0.333333 0.02 -0.157812 12 6 338 149 60 60 0 0 TT 9.324402 31 0 866 0 KEEP - Ttc23l NO B[a]P_1 chr15 10965761 10965761 G C exonic Rxfp3 nonsynonymous SNV NM_178717:c.C1279G:p.P427A exonic Rxfp3 nonsynonymous SNV uc007vgy.1:c.C1279G:p.P427A exonic ENSMUSG00000060735 nonsynonymous SNV ENSMUST00000058007:c.C1279G:p.P427A 15qA1 NA NA chr15 10965761 CTGxCTT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 373 2 0 92.221314 0.242604 0.02 3.899563 128 41 3486 1133 60 60 0 0 GG 41.379667 138 0 3697 0 KEEP - Rxfp3 NO B[a]P_1 chr15 12048071 12048071 G T exonic Zfr nonsynonymous SNV NM_011767:c.G115T:p.A39S exonic Zfr nonsynonymous SNV uc007vhk.2:c.G115T:p.A39S exonic ENSMUSG00000022201 nonsynonymous SNV ENSMUST00000022814:c.G49T:p.A17S 15qA1 NA NA chr15 12048071 GCGxCGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.926633 0.92664 0.999993 109 0 0 30.855775 0.288889 0.02 -0.394597 32 13 889 364 60 60 0 0 GG 11.753402 41 1 1107 5 KEEP + Zfr YES B[a]P_1 chr15 21513748 21513748 C T intronic Cdh12 NA NA intronic Cdh12 NA NA intronic ENSMUSG00000040452 NA NA 15qA2 NA NA chr15 21513748 TATxCCT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 199 0 0 56.292306 0.257732 0.02 0.835888 72 25 2027 684 60 60 0 0 CC 21.949406 73 0 2048 0 KEEP + Cdh12 NO B[a]P_1 chr15 25734277 25734277 G C exonic Myo10 nonsynonymous SNV NM_019472:c.G4902C:p.Q1634H exonic Myo10 nonsynonymous SNV uc007vje.1:c.G2664C:p.Q888H exonic ENSMUSG00000022272 nonsynonymous SNV ENSMUST00000022882:c.G2664C:p.Q888H 15qB1 NA NA chr15 25734277 GCAxATC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934361 0.934492 0.999859 79 0 0 8.728706 0.108696 0.02 -0.403308 41 5 1134 132 60 60 0 0 GG 5.41307 18 0 498 0 KEEP + Myo10 NO B[a]P_1 chr15 34514444 34514444 A C exonic Nipal2 synonymous SNV NM_145469:c.T732G:p.T244T exonic Nipal2 synonymous SNV uc007vlw.1:c.T732G:p.T244T exonic ENSMUSG00000038879 synonymous SNV ENSMUST00000040791:c.T732G:p.T244T 15qB3.1 NA NA chr15 34514444 ATAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 163 4 0 42.290724 0.258824 0.02 0.950046 63 22 1773 529 60 60 0 0 AA 16.543169 55 0 1535 0 KEEP - Nipal2 NO B[a]P_1 chr15 35984581 35984581 T A exonic Rgs22 nonsynonymous SNV NM_001195748:c.A2201T:p.H734L exonic Rgs22 nonsynonymous SNV uc011zsd.1:c.A2201T:p.H734L exonic ENSMUSG00000037627 nonsynonymous SNV ENSMUST00000174881:c.A1829T:p.H610L 15qB3.1 NA NA chr15 35984581 TGAxGGA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 101 0 0 11.847851 0.117647 0.02 1.239296 45 6 1229 170 60 60 0 0 TT 12.029496 40 0 1081 0 KEEP - Rgs22 NO B[a]P_1 chr15 38863382 38863382 G C intronic Fzd6 NA NA intronic Fzd6 NA NA intronic ENSMUSG00000022297 NA NA 15qB3.1 NA NA chr15 38863382 GTAxGTG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 140 0 0 19.818739 0.171429 0.02 0.983675 58 12 1615 280 60 60 0 0 GG 16.243419 54 0 1520 0 KEEP + Fzd6 NO B[a]P_1 chr15 39513268 39513268 G T exonic Rims2 synonymous SNV NM_001256384:c.G816T:p.S272S exonic Rims2 synonymous SNV uc007voh.1:c.G816T:p.S272S exonic ENSMUSG00000037386 synonymous SNV ENSMUST00000110311:c.G816T:p.S272S 15qB3.1 NA NA chr15 39513268 ATCxTCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999919 0.999919 1 193 0 0 54.849631 0.252632 0.02 0.862932 71 24 1740 667 60 60 0 0 GG 21.643293 72 0 1864 0 KEEP + Rims2 YES B[a]P_1 chr15 44418004 44418004 G T exonic Pkhd1l1 nonsynonymous SNV NM_138674:c.G11616T:p.L3872F exonic Pkhd1l1 nonsynonymous SNV uc007vpy.1:c.G11616T:p.L3872F exonic ENSMUSG00000038725 nonsynonymous SNV ENSMUST00000038336:c.G11616T:p.L3872F 15qB3.2 NA NA chr15 44418004 CTTxGTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 141 0 0 45.333452 0.311475 0.02 1.151532 42 19 1189 527 60 60 0 0 GG 18.049977 60 0 1724 0 KEEP + Pkhd1l1 YES B[a]P_1 chr15 54695580 54695580 G T exonic Enpp2 nonsynonymous SNV NM_015744:c.C1411A:p.Q471K exonic Enpp2 nonsynonymous SNV uc007vro.2:c.C1411A:p.Q471K exonic ENSMUSG00000022425 nonsynonymous SNV ENSMUST00000041591:c.C1411A:p.Q471K 15qD1 NA NA chr15 54695580 CCTxGAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 80 0 0 7.760776 0.105263 0.02 -0.333215 34 4 947 114 60 60 0 0 GG 8.422918 28 0 798 0 KEEP - Enpp2 YES B[a]P_1 chr15 55398882 55398882 A T intronic Mtbp NA NA intronic Mtbp NA NA intronic ENSMUSG00000022369 NA NA 15qD1 NA NA chr15 55398882 CAAxCGG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 75 0 0 6.914767 0.114286 0.02 -0.306864 31 4 839 104 60 60 0 0 AA 8.718468 29 0 781 0 KEEP + Mtbp NO B[a]P_1 chr15 55398883 55398883 C A intronic Mtbp NA NA intronic Mtbp NA NA intronic ENSMUSG00000022369 NA NA 15qD1 NA NA chr15 55398883 AAAxGGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 74 0 0 7.469376 0.117647 0.02 -0.297632 30 4 695 109 60 60 0 0 CC 8.696229 29 0 688 0 KEEP + Mtbp YES B[a]P_1 chr15 61821044 61821044 C A exonic Myc nonsynonymous SNV NM_001177352:c.C901A:p.H301N exonic Myc nonsynonymous SNV uc007vyi.1:c.C901A:p.H301N exonic ENSMUSG00000022346 nonsynonymous SNV ENSMUST00000160009:c.C901A:p.H301N 15qD1 NA NA chr15 61821044 TGCxACG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851947 0.851984 0.999957 72 0 0 20.06279 0.236842 0.02 -0.333215 29 9 812 248 60 60 0 0 CC 7.818941 26 0 717 0 KEEP + Myc YES B[a]P_1 chr15 66528218 66528218 G T intronic Tg NA NA intronic Tg NA NA intronic ENSMUSG00000053469 NA NA 15qD2 NA NA chr15 66528218 GATxTTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.999859 50 0 0 7.962659 0.137931 0.02 -0.253938 25 4 653 111 60 60 0 0 GG 5.413166 18 0 484 0 KEEP + Tg YES B[a]P_1 chr15 66595935 66595935 A C exonic Tg nonsynonymous SNV NM_009375:c.A6665C:p.K2222T exonic Tg nonsynonymous SNV uc007wap.1:c.A6665C:p.K2222T exonic ENSMUSG00000053469 nonsynonymous SNV ENSMUST00000065916:c.A6665C:p.K2222T 15qD2 NA NA chr15 66595935 GGAxGCA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 343 0 0 16.694501 0.068627 0.02 4.212133 190 14 5412 318 60 60 0 0 AA 33.074871 110 0 3045 0 KEEP + Tg NO B[a]P_1 chr15 72376498 72376498 G C exonic Kcnk9 nonsynonymous SNV NM_001033876:c.C212G:p.P71R exonic Kcnk9 nonsynonymous SNV uc007wbk.1:c.C212G:p.P71R exonic ENSMUSG00000036760 nonsynonymous SNV ENSMUST00000044624:c.C212G:p.P71R 15qD3 NA NA chr15 72376498 TGGxGCT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 150 0 0 45.211029 0.25 0.02 0.923702 66 22 1841 562 60 60 0 0 GG 14.135597 47 0 1302 0 KEEP - Kcnk9 NO B[a]P_1 chr15 72954706 72954706 C A intronic Ago2 NA NA intronic Eif2c2 NA NA intronic ENSMUSG00000036698 NA NA 15qD3 NA NA chr15 72954706 CAAxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 37 0 0 11.468167 0.277778 0.02 -0.157804 13 5 351 137 60 60 0 0 CC 4.813183 16 0 457 0 KEEP - Ago2 YES B[a]P_1 chr15 75449627 75449627 C A UTR3 Zfp41 NA NA UTR3 Zfp41 NA NA UTR3 ENSMUSG00000047003 NA NA 15qD3 NA NA chr15 75449627 TGTxTGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 248 1 0 26.881124 0.109589 0.02 1.817206 130 16 3688 411 60 60 0 0 CC 23.464955 78 0 2240 0 KEEP + Zfp41 YES B[a]P_1 chr15 75724136 75724136 C A intronic Naprt1 NA NA intronic Naprt1 NA NA intronic ENSMUSG00000022574 NA NA 15qD3 NA NA chr15 75724136 GCTxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 114 0 0 17.60576 0.157895 0.02 1.097541 48 9 1350 241 60 60 0 0 CC 13.838483 46 0 1325 0 KEEP - Naprt1 YES B[a]P_1 chr15 75733916 75733916 C G exonic Eef1d nonsynonymous SNV NM_029663:c.G323C:p.G108A exonic Eef1d nonsynonymous SNV uc007who.1:c.G323C:p.G108A exonic ENSMUSG00000055762 nonsynonymous SNV ENSMUST00000137426:c.G71C:p.G24A 15qD3 NA NA chr15 75733916 TGGxCCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 182 1 0 19.250594 0.111111 0.02 0.906063 80 10 2211 281 60 60 0 0 CC 21.289204 71 0 1916 0 KEEP - Eef1d NO B[a]P_1 chr15 75812405 75812405 G C exonic Ccdc166 synonymous SNV NM_001163518:c.C255G:p.A85A exonic 2410075B13Rik synonymous SNV uc007why.2:c.C255G:p.A85A ncRNA_exonic ENSMUSG00000044095 NA NA 15qD3 NA NA chr15 75812405 GACxGCG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99519 0.998696 0.99649 102 0 0 22.753048 0.157895 0.02 1.029299 64 12 1619 314 60 60 0 0 GG 4.507839 15 0 379 0 KEEP - Ccdc166 NO B[a]P_1 chr15 75832990 75832990 T A exonic Fam83h nonsynonymous SNV NM_001168253:c.A2927T:p.E976V exonic Fam83h nonsynonymous SNV uc007wic.2:c.A2927T:p.E976V exonic ENSMUSG00000046761 nonsynonymous SNV ENSMUST00000060807:c.A2927T:p.E976V 15qD3 NA NA chr15 75832990 GACxCCC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 273 0 0 25.820821 0.09434 0.02 3.575995 144 15 4064 402 60 60 0 0 TT 23.151696 77 0 2136 0 KEEP - Fam83h NO B[a]P_1 chr15 76007588 76007588 C G exonic Plec nonsynonymous SNV NM_011117:c.G8731C:p.D2911H exonic Plec nonsynonymous SNV uc007wir.2:c.G8644C:p.D2882H exonic ENSMUSG00000022565 nonsynonymous SNV ENSMUST00000023226:c.G8644C:p.D2882H 15qD3 NA NA chr15 76007588 TATxTGT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 302 3 0 41.787039 0.110553 0.02 5.252603 177 22 4969 613 60 60 0 0 CC 20.436431 68 0 1898 0 KEEP - Plec NO B[a]P_1 chr15 76070872 76070872 C A exonic Parp10 nonsynonymous SNV NM_001163576:c.G2114T:p.R705M exonic Parp10 nonsynonymous SNV uc007wjj.2:c.G2114T:p.R705M exonic ENSMUSG00000063268 nonsynonymous SNV ENSMUST00000165738:c.G2114T:p.R705M 15qD3 NA NA chr15 76070872 CACxTTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 248 1 0 13.718502 0.065217 0.02 2.171788 129 9 3587 238 60 60 0 0 CC 21.33967 71 0 1975 0 KEEP - Parp10 YES B[a]P_1 chr15 76136142 76136142 C T exonic Oplah nonsynonymous SNV NM_153122:c.G412A:p.E138K exonic Oplah nonsynonymous SNV uc007wjo.1:c.G412A:p.E138K exonic ENSMUSG00000022562 nonsynonymous SNV ENSMUST00000023222:c.G412A:p.E138K 15qD3 NA NA chr15 76136142 GCTxGTC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 521 3 0 51.583507 0.114407 0.02 4.509038 209 27 5271 751 60 60 0 0 CC 55.290122 184 0 4706 0 KEEP - Oplah NO B[a]P_1 chr15 76165072 76165072 G T exonic Gpaa1 synonymous SNV NM_010331:c.G1683T:p.L561L exonic Gpaa1 synonymous SNV uc007wjr.1:c.G1683T:p.L561L exonic ENSMUSG00000022561 synonymous SNV ENSMUST00000172281:c.G1503T:p.L501L 15qD3 NA NA chr15 76165072 CCTxTTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 264 2 0 24.742662 0.1 0.02 3.179005 126 14 3456 378 60 60 0 0 GG 17.747184 59 0 1663 0 KEEP + Gpaa1 YES B[a]P_1 chr15 76468515 76468515 T G exonic Tonsl nonsynonymous SNV NM_183091:c.A707C:p.K236T exonic Tonsl nonsynonymous SNV uc007wle.2:c.A707C:p.K236T exonic ENSMUSG00000059323 nonsynonymous SNV ENSMUST00000079806:c.A257C:p.K86T 15qD3 NA NA chr15 76468515 ATCxTCA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998462 0.998465 0.999997 113 2 0 38.034281 0.253333 0.02 1.037651 56 19 1579 474 60 60 0 0 TT 8.711739 29 0 777 0 KEEP - Tonsl NO B[a]P_1 chr15 77415667 77415667 C A exonic Apol10b stopgain SNV NM_177820:c.G739T:p.E247X exonic Apol10b stopgain SNV uc007wnu.2:c.G739T:p.E247X exonic ENSMUSG00000050014 stopgain SNV ENSMUST00000089465:c.G739T:p.E247X 15qE1 NA NA chr15 77415667 CCTxTTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 268 0 0 57.749439 0.2 0.02 1.967044 112 28 3174 748 60 60 0 0 CC 27.955919 93 0 2639 0 KEEP - Apol10b YES B[a]P_1 chr15 78208979 78208979 G T exonic Tex33 synonymous SNV NM_001163613:c.C646A:p.R216R exonic 1700061J05Rik synonymous SNV uc011zvp.1:c.C646A:p.R216R exonic ENSMUSG00000062154 synonymous SNV ENSMUST00000169575:c.C646A:p.R216R 15qE1 NA NA chr15 78208979 TCCxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 344 1 0 78.619946 0.192513 0.02 3.544759 151 36 3989 1012 60 60 0 0 GG 33.056175 110 0 2912 0 KEEP - Tex33 YES B[a]P_1 chr15 78235966 78235966 C A exonic Tst nonsynonymous SNV NM_009437:c.G298T:p.D100Y exonic Tst nonsynonymous SNV uc007wpd.1:c.G298T:p.D100Y exonic ENSMUSG00000044986 nonsynonymous SNV ENSMUST00000058659:c.G298T:p.D100Y 15qE1 NA NA chr15 78235966 CATxGTA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 124 0 0 24.463098 0.179104 0.02 1.206568 55 12 1416 324 60 60 0 0 CC 12.619625 42 0 1066 0 KEEP - Tst YES B[a]P_1 chr15 78503443 78503443 C T exonic Elfn2 nonsynonymous SNV NM_183141:c.G1333A:p.A445T exonic Elfn2 nonsynonymous SNV uc007wrf.1:c.G1333A:p.A445T exonic ENSMUSG00000043460 nonsynonymous SNV ENSMUST00000088592:c.G1333A:p.A445T 15qE1 NA NA chr15 78503443 CAGxGCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 179 0 0 14.775945 0.07563 0.02 2.15207 110 9 2734 243 60 60 0 0 CC 12.621891 42 0 1064 0 KEEP + Elfn2 NO B[a]P_1 chr15 78867152 78867152 A G intronic Gcat NA NA intronic Gcat NA NA intronic ENSMUSG00000006378 NA NA 15qE1 NA NA chr15 78867152 TTCxGCT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992857 0.992926 0.999931 96 1 0 10.877431 0.125 0.02 0.557987 56 8 1554 175 60 60 0 0 AA 7.509369 25 0 666 0 KEEP + Gcat NO B[a]P_1 chr15 80078363 80078363 G T exonic Smcr7l nonsynonymous SNV NM_178719:c.G204T:p.K68N exonic Smcr7l nonsynonymous SNV uc007wvi.2:c.G204T:p.K68N exonic ENSMUSG00000022412 nonsynonymous SNV ENSMUST00000023048:c.G204T:p.K68N 15qE1 NA NA chr15 80078363 GAAxAGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739203 0.739671 0.999366 56 0 0 25.904202 0.34375 0.02 -0.280605 21 11 598 296 60 60 0 0 GG 5.114172 17 0 488 0 KEEP + Smcr7l YES B[a]P_1 chr15 81514459 81514459 G T intronic L3mbtl2 NA NA intronic L3mbtl2 NA NA intronic "ENSMUSG00000022394,ENSMUSG00000063765" NA NA 15qE1 NA NA chr15 81514459 CTTxGCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 145 0 0 32.26811 0.214286 0.02 1.081406 55 15 1554 409 60 60 0 0 GG 16.529672 55 0 1513 0 KEEP + L3mbtl2 YES B[a]P_1 chr15 82932711 82932711 C A intronic Serhl NA NA intronic Serhl NA NA ncRNA_exonic ENSMUSG00000090964 NA NA 15qE1 NA NA chr15 82932711 TTTxTGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 245 0 0 15.998364 0.07874 0.02 2.080982 117 10 3337 264 60 60 0 0 CC 26.172364 87 0 2495 0 KEEP + Serhl YES B[a]P_1 chr15 83697564 83697564 T A exonic Efcab6 nonsynonymous SNV NM_001161629:c.A1952T:p.E651V exonic Efcab6 nonsynonymous SNV uc007xbp.2:c.A1952T:p.E651V exonic ENSMUSG00000022441 nonsynonymous SNV ENSMUST00000016589:c.A4388T:p.E1463V 15qE2 NA NA chr15 83697564 AACxCCT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 226 0 0 16.750911 0.074627 0.02 2.010819 124 10 3519 274 60 60 0 0 TT 18.342043 61 0 1675 0 KEEP - Efcab6 NO B[a]P_1 chr15 84156536 84156536 C A intronic Parvg NA NA intronic Parvg NA NA intronic ENSMUSG00000022439 NA NA 15qE2 NA NA chr15 84156536 GGGxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 213 2 0 91.278633 0.339286 0.02 2.50696 74 38 2027 1043 60 60 0 0 CC 22.172983 74 0 1989 0 KEEP + Parvg YES B[a]P_1 chr15 84214844 84214844 A C intronic 1810041L15Rik NA NA intronic 1810041L15Rik NA NA intronic ENSMUSG00000062760 NA NA 15qE2 NA NA chr15 84214844 AGAxGTA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 140 6 0 10.713516 0.115942 0.02 0.895091 61 8 1721 176 60 60 0 0 AA 14.438155 48 0 1342 0 KEEP - 1810041L15Rik NO B[a]P_1 chr15 85649320 85649320 T C exonic Pkdrej synonymous SNV NM_011105:c.A2844G:p.R948R exonic Pkdrej synonymous SNV uc007xdm.1:c.A2844G:p.R948R exonic ENSMUSG00000052496 synonymous SNV ENSMUST00000064370:c.A2844G:p.R948R 15qE2 NA NA chr15 85649320 GCTxCGA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99442 0.994422 0.999997 107 0 0 20.903462 0.151515 0.02 1.216547 56 10 1525 283 60 60 0 0 TT 9.598938 32 0 873 0 KEEP - Pkdrej NO B[a]P_1 chr15 85650068 85650068 G T exonic Pkdrej nonsynonymous SNV NM_011105:c.C2096A:p.S699Y exonic Pkdrej nonsynonymous SNV uc007xdm.1:c.C2096A:p.S699Y exonic ENSMUSG00000052496 nonsynonymous SNV ENSMUST00000064370:c.C2096A:p.S699Y 15qE2 NA NA chr15 85650068 TTAxACA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926528 0.92664 0.999879 71 0 0 16.128708 0.2 0.02 -0.394597 32 8 899 210 70 60 0 0 GG 6.617964 22 0 626 0 KEEP - Pkdrej YES B[a]P_1 chr15 85861853 85861853 G A exonic Celsr1 nonsynonymous SNV NM_009886:c.C2348T:p.T783M exonic Celsr1 nonsynonymous SNV uc007xdt.1:c.C2348T:p.T783M exonic ENSMUSG00000016028 nonsynonymous SNV ENSMUST00000016172:c.C2348T:p.T783M 15qE2 NA NA chr15 85861853 CGCxTGC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 316 2 0 120.974055 0.245455 0.02 4.952643 166 54 3853 1484 60 60 0 0 GG 22.462433 75 0 1737 0 KEEP - Celsr1 NO B[a]P_1 chr15 85960528 85960528 A G intronic Gramd4 NA NA intronic Gramd4 NA NA intronic ENSMUSG00000035900 NA NA 15qE2 NA NA chr15 85960528 GTGxCTG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 139 0 0 12.678509 0.08046 0.02 0.914772 80 7 2243 199 60 60 0 0 AA 12.02942 40 0 1094 0 KEEP + Gramd4 NO B[a]P_1 chr15 88693534 88693534 G C intronic Pim3 NA NA intronic Pim3 NA NA intronic ENSMUSG00000035828 NA NA 15qE3 NA NA chr15 88693534 CGGxTGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 124 0 0 39.238802 0.253731 0.02 1.206301 50 17 1311 476 60 60 0 0 GG 11.42611 38 0 1010 0 KEEP + Pim3 NO B[a]P_1 chr15 91668738 91668738 G T upstream "Muc19,Smgc" NA NA upstream "Muc19,Muc19/Smgc,Smgc" NA NA UTR5 ENSMUSG00000047295 NA NA 15qE3 NA NA chr15 91668738 TACxCGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 156 0 0 31.378488 0.208955 0.02 1.108284 53 14 1239 396 60 60 0 0 GG 21.002603 70 0 1654 0 KEEP NA Muc19 YES B[a]P_1 chr15 91731346 91731346 G C splicing Muc19(NM_207243:exon29:c.3612-1G>C) NA NA splicing Muc19(uc007xie.1:exon29:c.3612-1G>C) NA NA splicing ENSMUSG00000044021(ENSMUST00000160242:exon29:c.3612-1G>C) NA NA 15qE3 NA NA chr15 91731346 TCAxCTC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 149 0 0 16.239566 0.108434 0.02 1.065775 74 9 2045 243 60 60 0 0 GG 11.129197 37 0 1048 0 KEEP + Muc19 NO B[a]P_1 chr15 93092265 93092265 C G exonic Gxylt1 nonsynonymous SNV NM_001033275:c.G291C:p.M97I exonic Gxylt1 nonsynonymous SNV uc007xiq.1:c.G291C:p.M97I exonic ENSMUSG00000036197 nonsynonymous SNV ENSMUST00000049484:c.G291C:p.M97I 15qE3 NA NA chr15 93092265 CAAxATA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996722 0.996724 0.999998 117 1 1 15.126497 0.114286 0.02 1.081498 62 8 1674 221 60 60 0 0 CC 10.526713 35 0 964 0 KEEP - Gxylt1 NO B[a]P_1 chr15 96836312 96836312 A G exonic Slc38a4 nonsynonymous SNV NM_027052:c.T1238C:p.L413P exonic Slc38a4 nonsynonymous SNV uc007xko.1:c.T1238C:p.L413P exonic ENSMUSG00000022464 nonsynonymous SNV ENSMUST00000023101:c.T1238C:p.L413P 15qF1 NA NA chr15 96836312 ATGxGAA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998462 0.998465 0.999997 116 0 0 9.181745 0.08 0.02 1.03791 69 6 1951 153 60 60 0 0 AA 8.422199 28 0 784 0 KEEP - Slc38a4 NO B[a]P_1 chr15 97215662 97215662 T G exonic Pced1b nonsynonymous SNV NM_172293:c.T1150G:p.F384V exonic Fam113b nonsynonymous SNV uc007xku.1:c.T1150G:p.F384V exonic ENSMUSG00000044250 nonsynonymous SNV ENSMUST00000059433:c.T1150G:p.F384V 15qF1 NA NA chr15 97215662 AACxTCC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 225 0 0 11.776884 0.077778 0.02 0.808432 83 7 2246 191 60 60 0 0 TT 29.959912 100 0 2658 0 KEEP + Pced1b NO B[a]P_1 chr15 97808176 97808176 G C exonic Col2a1 nonsynonymous SNV NM_001113515:c.C3658G:p.L1220V exonic Col2a1 nonsynonymous SNV uc007xlq.2:c.C3658G:p.L1220V exonic ENSMUSG00000022483 nonsynonymous SNV ENSMUST00000088354:c.C3775G:p.L1259V 15qF1 NA NA chr15 97808176 AGAxTTT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 194 0 0 74.171715 0.253731 0.02 2.394773 100 34 2767 909 60 60 0 0 GG 15.040449 50 0 1416 0 KEEP - Col2a1 NO B[a]P_1 chr15 98170493 98170493 A C exonic Olfr284 nonsynonymous SNV NM_146281:c.T878G:p.V293G exonic Olfr284 nonsynonymous SNV uc007xmh.1:c.T878G:p.V293G exonic ENSMUSG00000051793 nonsynonymous SNV ENSMUST00000063289:c.T878G:p.V293G 15qF1 NA NA chr15 98170493 TTCxCCT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 202 1 0 12.743486 0.079545 0.02 1.022148 81 7 2188 200 60 60 0 0 AA 22.844378 76 0 2011 0 KEEP - Olfr284 NO B[a]P_1 chr15 98377252 98377252 C A exonic Ccnt1 nonsynonymous SNV NM_009833:c.G630T:p.W210C exonic Ccnt1 nonsynonymous SNV uc007xmv.1:c.G630T:p.W210C exonic ENSMUSG00000011960 nonsynonymous SNV ENSMUST00000012104:c.G630T:p.W210C 15qF1 NA NA chr15 98377252 CTCxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 152 0 0 22.415422 0.146341 0.02 0.976188 70 12 1967 315 60 60 0 0 CC 15.244565 51 0 1373 0 KEEP - Ccnt1 YES B[a]P_1 chr15 98423219 98423219 A T exonic Adcy6 nonsynonymous SNV NM_007405:c.T3266A:p.M1089K exonic Adcy6 nonsynonymous SNV uc011zyy.1:c.T746A:p.M249K exonic ENSMUSG00000022994 nonsynonymous SNV ENSMUST00000096224:c.T3266A:p.M1089K 15qF1 NA NA chr15 98423219 CCCxTGT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 164 0 0 37.743377 0.204819 0.02 1.06576 66 17 1793 479 60 60 0 0 AA 17.141115 57 0 1527 0 KEEP - Adcy6 NO B[a]P_1 chr15 98683734 98683734 C A exonic Kmt2d nonsynonymous SNV NM_001033276:c.G6508T:p.G2170C exonic Mll2 nonsynonymous SNV uc007xoc.2:c.G6508T:p.G2170C exonic ENSMUSG00000048154 nonsynonymous SNV ENSMUST00000023741:c.G6508T:p.G2170C 15qF1 NA NA chr15 98683734 TACxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996722 0.996724 0.999999 113 0 0 32.568084 0.214286 0.02 1.081444 55 15 1537 412 60 60 0 0 CC 10.522724 35 0 954 0 KEEP - Kmt2d YES B[a]P_1 chr15 98695570 98695570 G C exonic Kmt2d nonsynonymous SNV NM_001033276:c.C828G:p.C276W exonic Mll2 nonsynonymous SNV uc007xoc.2:c.C828G:p.C276W exonic ENSMUSG00000048154 nonsynonymous SNV ENSMUST00000023741:c.C828G:p.C276W 15qF1 NA NA chr15 98695570 TTGxCAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 265 0 0 74.570451 0.187166 0.02 3.544236 152 35 4234 970 60 60 0 0 GG 15.038185 50 0 1378 0 KEEP - Kmt2d NO B[a]P_1 chr15 99424588 99424588 T A exonic Aqp5 nonsynonymous SNV NM_009701:c.T635A:p.V212E exonic Aqp5 nonsynonymous SNV uc007xpt.1:c.T635A:p.V212E exonic ENSMUSG00000044217 nonsynonymous SNV ENSMUST00000169082:c.T635A:p.V212E 15qF1 NA NA chr15 99424588 TCGxGGG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999835 0.999835 1 175 0 0 26.176147 0.144444 0.02 0.906203 77 13 2104 361 60 60 0 0 TT 15.937606 53 0 1420 0 KEEP + Aqp5 NO B[a]P_1 chr16 14413380 14413380 G T exonic Abcc1 nonsynonymous SNV NM_008576:c.G1288T:p.V430L exonic Abcc1 nonsynonymous SNV uc007yhj.1:c.G1288T:p.V430L exonic ENSMUSG00000023088 nonsynonymous SNV ENSMUST00000100167:c.G1288T:p.V430L 16qA1 NA NA chr16 14413380 TCCxTGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 121 0 0 26.096654 0.20339 0.02 1.178364 47 12 1098 333 60 60 0 0 GG 14.115838 47 0 1124 0 KEEP + Abcc1 YES B[a]P_1 chr16 15684292 15684292 A C exonic Prkdc synonymous SNV NM_011159:c.A2479C:p.R827R exonic Prkdc synonymous SNV uc007yhs.1:c.A2479C:p.R827R exonic ENSMUSG00000022672 synonymous SNV ENSMUST00000023352:c.A2479C:p.R827R 16qA2 NA NA chr16 15684292 AATxGAC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999997 72 0 0 23.077762 0.366667 0.02 -0.26295 19 11 534 264 60 60 0 0 AA 9.624039 32 0 882 0 KEEP + Prkdc NO B[a]P_1 chr16 17278214 17278214 G C exonic Tmem191c nonsynonymous SNV NM_177473:c.G854C:p.R285P exonic Tmem191c nonsynonymous SNV uc007ykp.1:c.G413C:p.R138P exonic ENSMUSG00000055692 nonsynonymous SNV ENSMUST00000069420:c.G311C:p.R104P 16qA3 NA NA chr16 17278214 TGCxCTA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 171 0 0 33.160498 0.153846 0.02 2.57727 88 16 2291 449 60 60 0 0 GG 16.235082 54 0 1437 0 KEEP + Tmem191c NO B[a]P_1 chr16 17771833 17771833 G T exonic Klhl22 nonsynonymous SNV NM_145479:c.G264T:p.Q88H exonic Klhl22 nonsynonymous SNV uc007ylz.1:c.G264T:p.Q88H exonic ENSMUSG00000022750 nonsynonymous SNV ENSMUST00000090146:c.G264T:p.Q88H 16qA3 NA NA chr16 17771833 GCAxGAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 45 0 0 11.367707 0.277778 0.02 -0.157825 13 5 357 136 60 60 0 0 GG 5.114068 17 0 486 0 KEEP + Klhl22 YES B[a]P_1 chr16 18151479 18151479 G C exonic Rtn4r nonsynonymous SNV NM_022982:c.G677C:p.G226A exonic Rtn4r nonsynonymous SNV uc007ymv.1:c.G677C:p.G226A exonic ENSMUSG00000043811 nonsynonymous SNV ENSMUST00000059589:c.G677C:p.G226A 16qA3 NA NA chr16 18151479 TTGxCCG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 706 3 0 51.593515 0.089506 0.02 7.322435 295 29 8040 801 60 60 0 0 GG 82.962774 277 0 7380 0 KEEP + Rtn4r NO B[a]P_1 chr16 18210662 18210662 C T ncRNA_exonic 4933432I09Rik NA NA ncRNA_exonic 4933432I09Rik NA NA intergenic "ENSMUSG00000043811(dist=58161),ENSMUSG00000090777(dist=7601)" NA NA 16qA3 NA NA chr16 18210662 TGGxAGG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99442 0.994422 0.999997 108 0 0 21.943148 0.166667 0.02 1.1165 55 11 1525 296 60 60 0 0 CC 9.325123 31 0 878 0 KEEP - 4933432I09Rik NO B[a]P_1 chr16 20282986 20282986 C A intronic Parl NA NA intronic Parl NA NA intronic ENSMUSG00000033918 NA NA 16qA3 NA NA chr16 20282986 AGCxGGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 117 1 0 24.903602 0.207547 0.02 1.230897 42 11 1020 314 60 60 0 0 CC 16.516688 55 0 1296 0 KEEP - Parl YES B[a]P_1 chr16 29459593 29459593 C A exonic Atp13a4 nonsynonymous SNV NM_001164612:c.G872T:p.G291V exonic Atp13a4 nonsynonymous SNV uc007ywa.2:c.G872T:p.G291V exonic ENSMUSG00000038094 nonsynonymous SNV ENSMUST00000057018:c.G872T:p.G291V 16qB2 NA NA chr16 29459593 CTCxCTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 243 0 0 13.164354 0.070175 0.02 2.196032 106 8 2952 219 60 60 0 0 CC 26.169076 87 0 2433 0 KEEP - Atp13a4 YES B[a]P_1 chr16 34880226 34880226 C A exonic Mylk synonymous SNV NM_139300:c.C1350A:p.P450P exonic Mylk synonymous SNV uc007zbd.1:c.C1350A:p.P450P exonic ENSMUSG00000022836 synonymous SNV ENSMUST00000023538:c.C1350A:p.P450P 16qB3 NA NA chr16 34880226 CCCxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 125 0 0 68.513448 0.385714 0.02 1.081524 43 27 1141 759 60 60 0 0 CC 12.582325 42 0 1103 0 KEEP + Mylk YES B[a]P_1 chr16 35647239 35647239 G T exonic Sema5b synonymous SNV NM_013661:c.G786T:p.R262R exonic Sema5b synonymous SNV uc007zbm.2:c.G786T:p.R262R exonic ENSMUSG00000052133 synonymous SNV ENSMUST00000050625:c.G786T:p.R262R 16qB3 NA NA chr16 35647239 CCGxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 117 0 0 24.825981 0.169014 0.02 1.072685 59 12 1660 331 60 60 0 0 GG 11.428638 38 0 1043 0 KEEP + Sema5b YES B[a]P_1 chr16 35664617 35664617 C A downstream Sema5b NA NA downstream Sema5b NA NA exonic ENSMUSG00000052133 nonsynonymous SNV ENSMUST00000089640:c.C3144A:p.S1048R 16qB3 NA NA chr16 35664617 CAGxAAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73957 0.739671 0.999863 64 2 0 10.169627 0.15625 0.02 -0.280286 27 5 739 138 60 60 0 0 CC 6.01629 20 0 568 0 KEEP NA Sema5b YES B[a]P_1 chr16 35920672 35920672 G T intergenic "Parp14(dist=49204),Dtx3l(dist=5929)" NA NA intergenic "Parp14(dist=49204),Dtx3l(dist=5929)" NA NA exonic ENSMUSG00000062279 nonsynonymous SNV ENSMUST00000078393:c.G120T:p.E40D 16qB3 NA NA chr16 35920672 GGAxTTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 298 0 0 10.72489 0.063063 0.02 2.221447 104 7 2884 187 60 60 0 0 GG 45.682543 152 0 4245 0 KEEP NA Parp14 YES B[a]P_1 chr16 36082883 36082883 G T exonic Ccdc58 nonsynonymous SNV NM_001159422:c.G128T:p.C43F exonic Ccdc58 nonsynonymous SNV uc007zce.2:c.G158T:p.C53F exonic ENSMUSG00000075229 nonsynonymous SNV ENSMUST00000099937:c.G128T:p.C43F 16qB3 NA NA chr16 36082883 CCTxTAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 129 5 0 9.090607 0.098039 0.02 1.150175 46 5 1256 138 60 37 0 0 GG 16.243799 54 0 1531 0 KEEP + Ccdc58 YES B[a]P_1 chr16 44746444 44746444 C A exonic Gtpbp8 nonsynonymous SNV NM_001159329:c.G7T:p.A3S exonic Gtpbp8 nonsynonymous SNV uc007zhq.2:c.G7T:p.A3S exonic ENSMUSG00000022668 nonsynonymous SNV ENSMUST00000023348:c.G7T:p.A3S 16qB4 NA NA chr16 44746444 CCGxTGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 236 0 0 61.351715 0.290323 0.02 0.773081 66 27 1865 728 60 60 0 0 CC 30.9828 103 0 2914 0 KEEP - Gtpbp8 YES B[a]P_1 chr16 45686431 45686431 T G exonic Tmprss7 nonsynonymous SNV NM_172455:c.A380C:p.Q127P exonic Tmprss7 nonsynonymous SNV uc007ziv.1:c.A380C:p.Q127P exonic ENSMUSG00000033177 nonsynonymous SNV ENSMUST00000036617:c.A380C:p.Q127P 16qB5 NA NA chr16 45686431 TGCxGTA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 289 0 0 81.319069 0.31405 0.02 2.329643 83 38 2356 959 60 60 0 0 TT 35.489815 118 0 3253 0 KEEP - Tmprss7 NO B[a]P_1 chr16 48842891 48842891 C T intronic Retnla NA NA intronic Retnla NA NA intronic ENSMUSG00000061100 NA NA 16qB5 NA NA chr16 48842891 TTGxTCT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 257 7 0 9.011485 0.051282 0.02 2.168877 111 6 3049 164 60 60 0 0 CC 32.784571 109 0 3038 0 KEEP + Retnla NO B[a]P_1 chr16 5106041 5106041 A G exonic Ppl nonsynonymous SNV NM_008909:c.T575C:p.L192P exonic Ppl nonsynonymous SNV uc007ybt.1:c.T575C:p.L192P exonic ENSMUSG00000039457 nonsynonymous SNV ENSMUST00000035672:c.T575C:p.L192P 16qA1 NA NA chr16 5106041 TGGxGTT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 394 0 0 64.462057 0.155 0.02 5.010199 169 31 4716 871 60 60 0 0 AA 44.487552 148 0 4099 0 KEEP - Ppl NO B[a]P_1 chr16 5106885 5106885 G T exonic Ppl synonymous SNV NM_008909:c.C408A:p.V136V exonic Ppl synonymous SNV uc007ybt.1:c.C408A:p.V136V exonic ENSMUSG00000039457 synonymous SNV ENSMUST00000035672:c.C408A:p.V136V 16qA1 NA NA chr16 5106885 GTTxACT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 279 0 0 55.140326 0.176471 0.02 3.744222 126 27 3498 732 60 60 0 0 GG 24.966291 83 0 2350 0 KEEP - Ppl YES B[a]P_1 chr16 55816229 55816229 C T exonic Nfkbiz nonsynonymous SNV NM_001159394:c.G1636A:p.A546T exonic Nfkbiz nonsynonymous SNV uc007zlm.2:c.G1636A:p.A546T exonic ENSMUSG00000035356 nonsynonymous SNV ENSMUST00000114458:c.G1636A:p.A546T 16qC1.1 NA NA chr16 55816229 CAGxTCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 313 6 0 94.644556 0.310606 0.02 2.037333 91 41 2523 1106 60 60 0 0 CC 40.007146 133 0 3762 0 KEEP - Nfkbiz NO B[a]P_1 chr16 56606323 56606323 T G intronic Abi3bp NA NA intronic Abi3bp NA NA intronic ENSMUSG00000035258 NA NA 16qC1.1 NA NA chr16 56606323 TCTxGAA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 130 2 0 27.199366 0.218182 0.02 1.212934 43 12 1188 340 60 60 0 0 TT 15.928835 53 0 1444 0 KEEP + Abi3bp NO B[a]P_1 chr16 59461316 59461316 G T exonic Gabrr3 nonsynonymous SNV NM_001081190:c.G1207T:p.D403Y exonic Gabrr3 nonsynonymous SNV uc007zpf.1:c.G1207T:p.D403Y exonic ENSMUSG00000074991 nonsynonymous SNV ENSMUST00000099653:c.G631T:p.D211Y 16qC1.3 NA NA chr16 59461316 GAGxACT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 78 0 0 23.518315 0.289474 0.02 -0.333196 27 11 770 282 60 60 0 0 GG 10.227577 34 0 962 0 KEEP + Gabrr3 YES B[a]P_1 chr16 60005433 60005433 G T exonic Epha6 nonsynonymous SNV NM_007938:c.C1824A:p.H608Q exonic Epha6 nonsynonymous SNV uc007zpo.1:c.C1824A:p.H608Q exonic ENSMUSG00000055540 nonsynonymous SNV ENSMUST00000068860:c.C1824A:p.H608Q 16qC1.3 "Score=0.945363;Name=No.62948,chr3:21651987" NA chr16 60005433 GATxTGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 96 0 0 19.548019 0.230769 0.02 -0.341942 30 9 810 244 60 60 0 0 GG 12.632423 42 0 1171 0 KEEP - Epha6 YES B[a]P_1 chr16 62885384 62885384 G C exonic Pros1 synonymous SNV NM_011173:c.G234C:p.T78T exonic Pros1 synonymous SNV uc007zpx.1:c.G234C:p.T78T exonic ENSMUSG00000022912 synonymous SNV ENSMUST00000023629:c.G234C:p.T78T 16qC1.3 NA NA chr16 62885384 GACxGTA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 57 0 0 7.267149 0.153846 0.02 -0.227909 22 4 584 102 60 60 0 0 GG 6.915184 23 0 616 0 KEEP + Pros1 NO B[a]P_1 chr16 64477685 64477685 T G exonic Csnka2ip nonsynonymous SNV NM_173861:c.A809C:p.K270T exonic Csnka2ip nonsynonymous SNV uc012aha.1:c.A809C:p.K270T exonic ENSMUSG00000068167 nonsynonymous SNV ENSMUST00000089279:c.A809C:p.K270T 16qC1.3 NA NA chr16 64477685 AACxTTG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 64 0 0 15.533408 0.333333 0.02 -0.184115 14 7 386 180 60 60 0 0 TT 9.023944 30 0 843 0 KEEP - Csnka2ip NO B[a]P_1 chr16 89856112 89856112 T C exonic Tiam1 nonsynonymous SNV NM_001145886:c.A2366G:p.D789G exonic Tiam1 nonsynonymous SNV uc007zvu.2:c.A2366G:p.D789G exonic ENSMUSG00000002489 nonsynonymous SNV ENSMUST00000002588:c.A2366G:p.D789G 16qC3.3 NA NA chr16 89856112 GTGxCCC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 170 0 0 8.35121 0.061728 0.02 1.074745 76 5 2094 141 60 60 0 0 TT 17.953349 60 0 1572 0 KEEP - Tiam1 NO B[a]P_1 chr16 89897984 89897984 C G exonic Tiam1 nonsynonymous SNV NM_001145886:c.G829C:p.A277P exonic Tiam1 nonsynonymous SNV uc007zvu.2:c.G829C:p.A277P exonic ENSMUSG00000002489 nonsynonymous SNV ENSMUST00000002588:c.G829C:p.A277P 16qC3.3 NA NA chr16 89897984 CGGxAGC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 147 0 0 54.184119 0.328358 0.02 1.107958 45 22 1230 621 60 60 0 0 CC 20.084267 67 0 1850 0 KEEP - Tiam1 NO B[a]P_1 chr16 90727327 90727327 C A exonic Mis18a nonsynonymous SNV NM_025642:c.G191T:p.G64V exonic 2610039C10Rik nonsynonymous SNV uc007zwj.1:c.G191T:p.G64V exonic ENSMUSG00000022978 nonsynonymous SNV ENSMUST00000023703:c.G191T:p.G64V 16qC3.3 NA NA chr16 90727327 TCGxCCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 125 0 0 31.07113 0.208955 0.02 1.107709 53 14 1472 393 60 60 0 0 CC 13.23217 44 0 1202 0 KEEP - Mis18a YES B[a]P_1 chr16 90947070 90947070 G T exonic Synj1 synonymous SNV NM_001045515:c.C3546A:p.G1182G exonic Synj1 synonymous SNV uc007zww.2:c.C3546A:p.G1182G exonic ENSMUSG00000022973 synonymous SNV ENSMUST00000023696:c.C3546A:p.G1182G 16qC3.3 NA NA chr16 90947070 TGGxCCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 137 2 0 49.159502 0.275 0.02 0.994024 58 22 1625 591 60 60 0 0 GG 10.692513 39 1 1083 9 KEEP - Synj1 YES B[a]P_1 chr16 91561884 91561884 A C exonic Ifngr2 nonsynonymous SNV NM_008338:c.A726C:p.Q242H exonic Ifngr2 nonsynonymous SNV uc007zxq.1:c.A726C:p.Q242H exonic ENSMUSG00000022965 nonsynonymous SNV ENSMUST00000023687:c.A726C:p.Q242H 16qC3.3 NA NA chr16 91561884 GCAxGTC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963732 0.963774 0.999957 91 0 0 13.19047 0.137255 0.02 1.052834 44 7 1227 187 60 60 0 0 AA 7.820539 26 0 725 0 KEEP + Ifngr2 NO B[a]P_1 chr16 92499450 92499450 G T exonic Clic6 nonsynonymous SNV NM_172469:c.G752T:p.G251V exonic Clic6 nonsynonymous SNV uc007zzg.1:c.G752T:p.G251V exonic ENSMUSG00000022949 nonsynonymous SNV ENSMUST00000023670:c.G752T:p.G251V 16qC4 NA NA chr16 92499450 ACGxGTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 105 0 0 23.701487 0.2 0.02 1.212968 44 11 1221 304 60 60 0 0 GG 11.39583 38 0 1012 0 KEEP + Clic6 YES B[a]P_1 chr16 93690693 93690693 A C exonic Cbr3 nonsynonymous SNV NM_173047:c.A518C:p.K173T exonic Cbr3 nonsynonymous SNV uc007zzs.2:c.A518C:p.K173T exonic ENSMUSG00000022947 nonsynonymous SNV ENSMUST00000039620:c.A518C:p.K173T 16qC4 NA NA chr16 93690693 TGAxAAA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934489 0.934492 0.999997 89 0 0 13.827143 0.152174 0.02 -0.403359 39 7 1080 190 60 60 0 0 AA 8.422054 28 0 780 0 KEEP + Cbr3 NO B[a]P_1 chr16 94984280 94984280 T C exonic Kcnj6 nonsynonymous SNV NM_001025584:c.A965G:p.Q322R exonic Kcnj6 nonsynonymous SNV uc008abk.1:c.A965G:p.Q322R exonic ENSMUSG00000043301 nonsynonymous SNV ENSMUST00000056268:c.A965G:p.Q322R 16qC4 NA NA chr16 94984280 GCTxGGC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 214 2 0 8.840476 0.076087 0.02 0.88859 85 7 2349 162 60 60 0 0 TT 28.845792 96 0 2596 0 KEEP - Kcnj6 NO B[a]P_1 chr17 12807649 12807649 T C exonic Slc22a2 nonsynonymous SNV NM_013667:c.T1349C:p.V450A exonic Slc22a2 nonsynonymous SNV uc008akw.1:c.T1349C:p.V450A exonic ENSMUSG00000040966 nonsynonymous SNV ENSMUST00000046959:c.T1349C:p.V450A 17qA1 NA NA chr17 12807649 TGGxCTG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 613 4 0 129.624433 0.215328 0.02 6.370046 215 59 5983 1634 60 60 0 0 TT 70.502584 242 1 6633 21 KEEP + Slc22a2 NO B[a]P_1 chr17 13122499 13122499 C A exonic Acat3 synonymous SNV NM_153151:c.G411T:p.V137V exonic Acat3 synonymous SNV uc008alo.1:c.G411T:p.V137V exonic ENSMUSG00000062480 synonymous SNV ENSMUST00000043923:c.G411T:p.V137V 17qA1 "Score=0.940698;Name=No.65316,chr17:13145105" NA chr17 13122499 ACCxACC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.688863 0.693668 0.993072 44 0 0 7.89681 0.133333 0.02 -0.263065 26 4 724 111 60 60 0 0 CC 3.309134 11 0 315 0 KEEP - Acat3 YES B[a]P_1 chr17 15511751 15511751 C A exonic Dll1 nonsynonymous SNV NM_007865:c.G227T:p.C76F exonic Dll1 nonsynonymous SNV uc008aoi.2:c.G227T:p.C76F exonic ENSMUSG00000014773 nonsynonymous SNV ENSMUST00000014917:c.G227T:p.C76F 17qA2 NA NA chr17 15511751 GTGxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.978797 0.986153 0.99254 70 0 0 22.533036 0.189655 0.02 1.178087 47 11 1325 295 60 60 0 0 CC 2.707693 9 0 263 0 KEEP - Dll1 YES B[a]P_1 chr17 15680917 15680917 T C UTR3 Prdm9 NA NA exonic Prdm9 nonsynonymous SNV uc012akv.1:c.A2479G:p.R827G UTR3 ENSMUSG00000051977 NA NA 17qA2 NA NA chr17 15680917 TTCxCAT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 82 0 0 7.223503 0.097561 0.02 -0.368311 37 4 1043 110 60 60 0 0 TT 8.723457 29 0 818 0 KEEP - Prdm9 NO B[a]P_1 chr17 19530635 19530635 A C exonic Vmn2r99 nonsynonymous SNV NM_001104551:c.A1652C:p.K551T exonic Vmn2r99 nonsynonymous SNV uc012ali.1:c.A1652C:p.K551T exonic ENSMUSG00000090304 nonsynonymous SNV ENSMUST00000163870:c.A1079C:p.K360T 17qA3.2 NA NA chr17 19530635 ACAxGTG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 359 5 0 14.126657 0.056497 0.02 2.851461 167 10 4582 260 60 60 0 0 AA 42.383385 141 0 3870 0 KEEP + Vmn2r99 NO B[a]P_1 chr17 20599329 20599329 T A downstream Vmn2r108 NA NA downstream Vmn2r108 NA NA downstream ENSMUSG00000091805 NA NA 17qA3.2 NA NA chr17 20599329 TTAxTTT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 166 0 0 14.248368 0.097561 0.02 0.878421 74 8 1968 218 60 60 0 0 TT 18.044942 60 0 1633 0 KEEP NA Vmn2r108 NO B[a]P_1 chr17 23496748 23496748 T A exonic Vmn2r115 nonsynonymous SNV NM_001104579:c.T2227A:p.S743T exonic Vmn2r115 nonsynonymous SNV uc009vbs.1:c.T2227A:p.S743T exonic ENSMUSG00000091076 nonsynonymous SNV ENSMUST00000168175:c.T2227A:p.S743T 17qA3.3 "Score=0.924606;Name=No.65595,chr17:23572303" NA chr17 23496748 GGTxCAG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 525 4 10 18.46957 0.057522 0.02 5.378903 213 13 5923 338 60 60 0 0 TT 70.682505 235 0 6518 0 KEEP + Vmn2r115 NO B[a]P_1 chr17 23608237 23608237 C G exonic Vmn2r117 nonsynonymous SNV NM_001104581:c.G1561C:p.G521R exonic Vmn2r117 nonsynonymous SNV uc009vbu.1:c.G1561C:p.G521R exonic ENSMUSG00000091407 nonsynonymous SNV ENSMUST00000171996:c.G1561C:p.G521R 17qA3.3 "Score=0.971132;Name=No.65604,chr17:23582224" NA chr17 23608237 GACxACA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 733 24 33 17.967624 0.054393 0.02 5.974353 226 13 6280 336 60 23 0 0 CC 96.532912 321 0 9137 0 KEEP - Vmn2r117 NO B[a]P_1 chr17 24483132 24483132 T C exonic Abca17 synonymous SNV NM_001031621:c.A270G:p.K90K exonic Abca17 synonymous SNV uc008avk.1:c.A270G:p.K90K exonic ENSMUSG00000035435 synonymous SNV ENSMUST00000039324:c.A270G:p.K90K 17qA3.3 NA NA chr17 24483132 AGCxTTT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 156 0 0 11.019373 0.075 0.02 1.092021 74 6 2055 174 60 60 1 0 TT 16.818118 56 0 1543 0 KEEP - Abca17 NO B[a]P_1 chr17 24712216 24712216 G T exonic Pkd1 nonsynonymous SNV NM_013630:c.G5931T:p.E1977D exonic Pkd1 nonsynonymous SNV uc012amm.1:c.G2895T:p.E965D exonic ENSMUSG00000032855 nonsynonymous SNV ENSMUST00000035565:c.G5931T:p.E1977D 17qA3.3 NA NA chr17 24712216 TGAxCCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 169 2 0 22.434695 0.11215 0.02 2.452198 95 12 2643 330 60 60 0 0 GG 14.110564 47 0 1286 0 KEEP + Pkd1 YES B[a]P_1 chr17 24746009 24746009 C G exonic Tsc2 nonsynonymous SNV NM_001039363:c.G2425C:p.A809P exonic Tsc2 nonsynonymous SNV uc008awy.1:c.G2422C:p.A808P exonic ENSMUSG00000002496 nonsynonymous SNV ENSMUST00000115291:c.G2308C:p.A770P 17qA3.3 NA NA chr17 24746009 TGGxCAA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.88875 0.888875 0.999859 69 2 0 12.355124 0.146341 0.02 -0.359527 35 6 975 169 60 60 0 0 CC 5.413132 18 0 490 0 KEEP - Tsc2 NO B[a]P_1 chr17 25015713 25015713 T A upstream Igfals NA NA upstream Igfals NA NA exonic ENSMUSG00000046070 nonsynonymous SNV ENSMUST00000168131:c.T8A:p.L3H 17qA3.3 NA NA chr17 25015713 CCCxTGC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 187 0 0 76.467383 0.373494 0.02 0.967386 52 31 1476 855 60 60 0 0 TT 21.642992 72 0 1988 0 KEEP NA Igfals NO B[a]P_1 chr17 25782080 25782080 T G intronic Lmf1 NA NA intronic Lmf1 NA NA intronic ENSMUSG00000002279 NA NA 17qA3.3 NA NA chr17 25782080 CACxTTT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 33 0 0 9.318125 0.357143 0.02 -0.122698 9 5 256 109 60 60 0 0 TT 4.811887 16 0 442 0 KEEP + Lmf1 NO B[a]P_1 chr17 27228918 27228918 G T intronic Itpr3 NA NA intronic Itpr3 NA NA intronic ENSMUSG00000042644 NA NA 17qA3.3 NA NA chr17 27228918 CAGxGGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999998 99 0 0 29.785483 0.245283 0.02 1.328929 40 13 1102 364 60 60 0 0 GG 9.925068 33 0 913 0 KEEP + Itpr3 YES B[a]P_1 chr17 30786726 30786726 C A exonic Dnah8 synonymous SNV NM_013811:c.C1188A:p.I396I exonic Dnahc8 synonymous SNV uc008btz.1:c.C1188A:p.I396I exonic ENSMUSG00000033826 synonymous SNV ENSMUST00000035963:c.C1188A:p.I396I 17qA3.3 NA NA chr17 30786726 GATxGAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 411 0 0 72.562387 0.157205 0.02 4.774656 193 36 4857 986 60 60 0 0 CC 36.654953 122 0 3154 0 KEEP + Dnah8 YES B[a]P_1 chr17 30786727 30786727 G A exonic Dnah8 nonsynonymous SNV NM_013811:c.G1189A:p.E397K exonic Dnahc8 nonsynonymous SNV uc008btz.1:c.G1189A:p.E397K exonic ENSMUSG00000033826 nonsynonymous SNV ENSMUST00000035963:c.G1189A:p.E397K 17qA3.3 NA NA chr17 30786727 ATCxAGC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 409 0 0 73.353028 0.157205 0.02 4.773728 193 36 5131 994 60 60 0 0 GG 36.363035 121 0 3158 0 KEEP + Dnah8 NO B[a]P_1 chr17 31105486 31105486 A C exonic Umodl1 nonsynonymous SNV NM_177465:c.A578C:p.N193T exonic Umodl1 nonsynonymous SNV uc008buf.1:c.A578C:p.N193T exonic ENSMUSG00000054134 nonsynonymous SNV ENSMUST00000066554:c.A578C:p.N193T 17qA3.3 NA NA chr17 31105486 GGAxCCA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 113 1 0 10.504527 0.089552 0.02 1.107844 61 6 1639 164 60 60 0 0 AA 11.427675 38 0 1025 0 KEEP + Umodl1 NO B[a]P_1 chr17 32514942 32514942 T G intronic Wiz NA NA exonic Wiz nonsynonymous SNV uc008bwt.2:c.A762C:p.E254D exonic ENSMUSG00000024050 nonsynonymous SNV ENSMUST00000003725:c.A762C:p.E254D 17qB1 NA NA chr17 32514942 CACxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 162 0 0 41.712905 0.215686 0.02 2.194277 80 22 2247 543 60 60 0 0 TT 15.340533 51 0 1425 0 KEEP - Wiz NO B[a]P_1 chr17 33406249 33406249 G T exonic Olfr63 nonsynonymous SNV NM_146937:c.G579T:p.R193S exonic Olfr63 nonsynonymous SNV uc008byg.1:c.G579T:p.R193S exonic ENSMUSG00000054666 nonsynonymous SNV ENSMUST00000067840:c.G579T:p.R193S 17qB1 NA NA chr17 33406249 AAGxACA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 185 0 0 48.876299 0.232323 0.02 0.729324 76 23 2121 612 60 60 0 0 GG 20.147743 67 0 1864 0 KEEP + Olfr63 YES B[a]P_1 chr17 34136786 34136786 T A exonic H2-K1 nonsynonymous SNV NM_001001892:c.A227T:p.E76V exonic H2-K1 nonsynonymous SNV uc008cap.1:c.A227T:p.E76V exonic ENSMUSG00000061232 nonsynonymous SNV ENSMUST00000025181:c.A227T:p.E76V 17qB1 "Score=0.916841;Name=No.65635,chr17:35399418" NA chr17 34136786 CCCxCCT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 507 1 5 137.901684 0.291667 0.02 4.978106 153 63 4269 1645 60 60 0 0 TT 65.430869 218 0 5877 0 KEEP - H2-K1 NO B[a]P_1 chr17 34292473 34292473 C G exonic H2-DMb1 nonsynonymous SNV NM_010387:c.C151G:p.L51V exonic H2-DMb1 nonsynonymous SNV uc008cbq.1:c.C151G:p.L51V exonic ENSMUSG00000079547 nonsynonymous SNV ENSMUST00000114232:c.C151G:p.L51V 17qB1 "Score=0.933103;Name=No.65641,chr17:34280813" NA chr17 34292473 CTGxTGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 76 0 0 9.750356 0.125 0.02 -0.350224 35 5 972 139 60 60 0 0 CC 8.723528 29 0 821 0 KEEP + H2-DMb1 NO B[a]P_1 chr17 34337072 34337072 G A intronic Psmb8 NA NA intronic Psmb8 NA NA exonic ENSMUSG00000092550 stopgain SNV ENSMUST00000173770:c.C61T:p.R21X 17qB1 NA NA chr17 34337072 CTCxATC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 117 2 0 37.230414 0.266667 0.02 1.160602 44 16 1125 447 60 60 0 0 GG 12.013466 40 0 989 0 KEEP + Psmb8 NO B[a]P_1 chr17 34349180 34349180 G T exonic Tap2 nonsynonymous SNV NM_011530:c.G1146T:p.M382I exonic Tap2 nonsynonymous SNV uc008cbx.2:c.G1146T:p.M382I exonic "ENSMUSG00000024339,ENSMUSG00000081512" nonsynonymous SNV ENSMUST00000025197:c.G1146T:p.M382I 17qB1 NA NA chr17 34349180 GATxGCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 437 3 0 126.96673 0.22093 0.02 6.197676 201 57 5619 1589 60 60 0 0 GG 30.930914 103 0 2888 0 KEEP + Tap2 YES B[a]P_1 chr17 34401885 34401885 C G exonic H2-Ab1 nonsynonymous SNV NM_207105:c.C274G:p.P92A exonic H2-Ab1 nonsynonymous SNV uc008ccc.1:c.C160G:p.P54A exonic ENSMUSG00000073421 nonsynonymous SNV ENSMUST00000040828:c.C274G:p.P92A 17qB1 NA NA chr17 34401885 CAGxCGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998463 0.998465 0.999997 123 0 0 39.553245 0.24 0.02 1.136518 57 18 1550 489 60 60 0 0 CC 9.576459 32 0 812 0 KEEP + H2-Ab1 NO B[a]P_1 chr17 34576803 34576803 G A splicing BC051142(NM_001163855:exon9:c.241+1G>A) NA NA splicing BC051142(uc008cco.2:exon9:c.241+1G>A) NA NA splicing "ENSMUSG00000057246(ENSMUST00000114175:exon9:c.241+1G>A,ENSMUST00000139063:exon14:c.352+1G>A)" NA NA 17qB1 NA NA chr17 34576803 TTCxTGA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 172 0 0 74.298309 0.352273 0.02 1.013437 57 31 1435 843 60 60 0 0 GG 15.027557 50 0 1276 0 KEEP + BC051142 NO B[a]P_1 chr17 34878899 34878899 C G intronic C4b NA NA intronic "C4a,C4b" NA NA intronic ENSMUSG00000073418 NA NA 17qB1 "Score=0.953125;Name=No.65650,chr17:34932098" NA chr17 34878899 CACxTCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 325 2 12 38.397327 0.142857 0.02 3.222757 144 24 3978 568 60 60 0 0 CC 34.279878 114 0 3164 0 KEEP - C4b NO B[a]P_1 chr17 36323600 36323600 G C exonic H2-T3 synonymous SNV NM_008208:c.C1071G:p.S357S exonic H2-T3 synonymous SNV uc008ckm.1:c.C1071G:p.S357S exonic ENSMUSG00000054128 synonymous SNV ENSMUST00000025312:c.C939G:p.S313S 17qB1 "Score=0.91196;Name=No.65675,chr17:36341244" NA chr17 36323600 CAGxGAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 132 0 0 8.384082 0.068493 0.02 1.011658 68 5 1896 139 60 60 0 0 GG 13.522768 45 0 1232 0 KEEP - H2-T3 NO B[a]P_1 chr17 38089003 38089003 G T exonic Olfr761 nonsynonymous SNV NM_001011829:c.C965A:p.A322D exonic Olfr761 nonsynonymous SNV uc008cnu.1:c.C965A:p.A322D exonic ENSMUSG00000071084 nonsynonymous SNV ENSMUST00000049620:c.C965A:p.A322D 17qB1 NA NA chr17 38089003 CAGxCAC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 125 9 0 46.514551 0.295775 0.02 1.073733 50 21 1381 552 60 60 0 0 GG 15.340413 51 0 1427 0 KEEP - Olfr761 YES B[a]P_1 chr17 38192136 38192136 G T exonic Olfr129 nonsynonymous SNV NM_146327:c.C374A:p.A125D exonic Olfr129 nonsynonymous SNV uc008cnv.1:c.C401A:p.A134D exonic ENSMUSG00000081724 nonsynonymous SNV ENSMUST00000122318:c.C401A:p.A134D 17qB1 NA NA chr17 38192136 AAGxCCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 354 0 0 174.090391 0.336406 0.02 4.782225 144 73 3976 1994 60 60 0 0 GG 34.541423 115 0 3152 0 KEEP - Olfr129 YES B[a]P_1 chr17 45628192 45628192 C T intergenic "Spats1(dist=16305),Aars2(dist=15598)" NA NA intergenic "Spats1(dist=16305),Aars2(dist=15598)" NA NA intergenic "ENSMUSG00000023935(dist=16305),ENSMUSG00000023938(dist=15598)" NA NA 17qB3 NA NA chr17 45628192 TGAxATC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 159 0 0 29.303054 0.172414 0.02 0.834548 72 15 1980 395 60 60 0 0 CC 15.040702 50 0 1420 0 KEEP NA Spats1 NO B[a]P_1 chr17 45775991 45775991 C A intronic Capn11 NA NA intronic Capn11 NA NA intronic ENSMUSG00000058626 NA NA 17qB3 NA NA chr17 45775991 AGGxCTA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 358 1 0 167.550913 0.330144 0.02 5.144855 140 69 3897 1922 60 60 0 0 CC 27.068676 90 0 2481 0 KEEP - Capn11 YES B[a]P_1 chr17 45802086 45802086 C A intronic Tmem63b NA NA intronic Tmem63b NA NA ncRNA_intronic ENSMUSG00000086472 NA NA 17qB3 NA NA chr17 45802086 GGAxACG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 232 0 0 108.634645 0.335821 0.02 2.305229 89 45 2357 1243 60 60 0 0 CC 22.254405 74 0 2014 0 KEEP - Tmem63b YES B[a]P_1 chr17 46302610 46302610 C G intronic Gtpbp2 NA NA intronic Gtpbp2 NA NA intronic ENSMUSG00000023952 NA NA 17qC NA NA chr17 46302610 CAAxGGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 151 0 0 86.291267 0.357143 0.02 0.83719 63 35 1399 973 60 60 0 0 CC 10.861806 40 1 914 10 KEEP + Gtpbp2 NO B[a]P_1 chr17 46848558 46848558 T G exonic Pex6 nonsynonymous SNV NM_145488:c.T110G:p.V37G exonic Pex6 nonsynonymous SNV uc008cud.1:c.T110G:p.V37G exonic ENSMUSG00000002763 nonsynonymous SNV ENSMUST00000002840:c.T110G:p.V37G 17qC NA NA chr17 46848558 TGGxGCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 0.999999 114 2 0 79.575419 0.462687 0.02 1.107962 36 31 998 849 60 60 0 0 TT 10.823648 36 0 955 0 KEEP + Pex6 NO B[a]P_1 chr17 47081748 47081748 A G exonic Ubr2 nonsynonymous SNV NM_001177374:c.T4175C:p.L1392P exonic Ubr2 nonsynonymous SNV uc012aut.1:c.T1715C:p.L572P exonic ENSMUSG00000023977 nonsynonymous SNV ENSMUST00000113335:c.T4175C:p.L1392P 17qC NA NA chr17 47081748 AAGxGTT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 135 0 0 20.66011 0.135135 0.02 1.145571 64 10 1790 286 60 60 0 0 AA 12.934451 43 0 1207 0 KEEP - Ubr2 NO B[a]P_1 chr17 47603214 47603214 C G exonic AI661453 synonymous SNV NM_145489:c.C915G:p.V305V exonic AI661453 synonymous SNV uc008cvg.2:c.C915G:p.V305V exonic ENSMUSG00000034382 synonymous SNV ENSMUST00000150819:c.C915G:p.V305V 17qC NA NA chr17 47603214 AGTxAGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.384723 0.387407 0.993072 37 0 0 6.363323 0.15 0.02 -0.175237 17 3 466 86 60 60 0 0 CC 3.308147 11 0 305 0 KEEP + AI661453 NO B[a]P_1 chr17 49619826 49619826 G T exonic Daam2 nonsynonymous SNV NM_001008231:c.C1474A:p.R492S exonic Daam2 nonsynonymous SNV uc008cyl.1:c.C1474A:p.R492S exonic ENSMUSG00000040260 nonsynonymous SNV ENSMUST00000057610:c.C1474A:p.R492S 17qC NA NA chr17 49619826 CGCxGGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.84656 0.851984 0.993634 56 0 0 43.16705 0.447368 0.02 -0.332981 21 17 500 464 60 60 0 0 GG 3.605657 12 0 299 0 KEEP - Daam2 YES B[a]P_1 chr17 53109761 53109761 C G intergenic "Kcnh8(dist=65217),Efhb(dist=428453)" NA NA intronic Kcnh8 NA NA intronic ENSMUSG00000073383 NA NA 17qC NA NA chr17 53109761 GCCxACC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 598 2 0 121.087888 0.302439 0.02 5.181934 143 62 3945 1461 60 60 0 0 CC 86.321685 287 0 8107 0 KEEP - Kcnh8 NO B[a]P_1 chr17 54423556 54423556 G T exonic Slc5a7 stopgain SNV NM_022025:c.C672A:p.Y224X exonic Slc5a7 stopgain SNV uc008czy.1:c.C672A:p.Y224X exonic ENSMUSG00000023945 stopgain SNV ENSMUST00000095712:c.C672A:p.Y224X 17qC NA NA chr17 54423556 CTGxTAT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 109 2 0 70.239814 0.490909 0.02 1.204599 28 27 740 739 60 60 0 0 GG 12.598808 42 0 1152 0 KEEP - Slc5a7 YES B[a]P_1 chr17 55749981 55749981 T G exonic Vmn2r118 nonsynonymous SNV NM_001104582:c.A828C:p.E276D exonic Vmn2r118 nonsynonymous SNV uc009vbv.1:c.A828C:p.E276D exonic ENSMUSG00000091504 nonsynonymous SNV ENSMUST00000168440:c.A828C:p.E276D 17qC NA NA chr17 55749981 CAGxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998463 0.998465 0.999998 120 0 0 18.595271 0.133333 0.02 1.037637 65 10 1766 266 60 60 0 0 TT 10.206074 34 0 918 0 KEEP - Vmn2r118 NO B[a]P_1 chr17 56140414 56140414 G T exonic Stap2 nonsynonymous SNV NM_145934:c.C365A:p.P122Q exonic Stap2 nonsynonymous SNV uc008dao.1:c.C365A:p.P122Q exonic ENSMUSG00000038781 nonsynonymous SNV ENSMUST00000043785:c.C365A:p.P122Q 17qD NA NA chr17 56140414 GATxGGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 151 0 0 60.348364 0.27551 0.02 0.83778 71 27 1966 725 60 60 0 0 GG 12.031799 40 0 1123 0 KEEP - Stap2 YES B[a]P_1 chr17 56597645 56597645 C A exonic Ptprs nonsynonymous SNV NM_001252453:c.G61T:p.V21L exonic Ptprs nonsynonymous SNV uc008dbx.2:c.G61T:p.V21L exonic ENSMUSG00000013236 nonsynonymous SNV ENSMUST00000025037:c.G61T:p.V21L 17qD NA NA chr17 56597645 GTAxGAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999763 0.999768 0.999995 164 0 0 65.537111 0.306818 0.02 1.022559 61 27 1488 762 60 60 0 0 CC 12.856076 43 0 1038 0 KEEP - Ptprs YES B[a]P_1 chr17 57179206 57179206 T A intronic Slc25a41 NA NA intronic Slc25a41 NA NA intronic ENSMUSG00000011486 NA NA 17qD NA NA chr17 57179206 TACxGTC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888312 0.888875 0.999366 71 2 0 17.627636 0.2 0.02 -0.350778 32 8 907 225 60 60 0 0 TT 5.113617 17 0 477 0 KEEP - Slc25a41 NO B[a]P_1 chr17 57363358 57363358 G C exonic C3 nonsynonymous SNV NM_009778:c.C1165G:p.L389V exonic C3 nonsynonymous SNV uc008deg.1:c.C1165G:p.L389V exonic ENSMUSG00000024164 nonsynonymous SNV ENSMUST00000024988:c.C1165G:p.L389V 17qD NA NA chr17 57363358 CCAxCAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 156 2 0 39.217063 0.180952 0.02 2.469757 86 19 2383 517 60 60 0 0 GG 12.927915 43 0 1184 0 KEEP - C3 NO B[a]P_1 chr17 61500294 61500294 C A intergenic "NONE(dist=NONE),Efna5(dist=1452012)" NA NA intergenic "AB350970(dist=941749),AK195428(dist=419864)" NA NA intergenic "ENSMUSG00000089610(dist=100925),ENSMUSG00000064570(dist=1306042)" NA NA 17qE1.1 "Score=0.956964;Name=No.68023,chr7:16418610" NA chr17 61500294 AAGxCTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 92 0 0 44.106547 0.367347 0.02 -0.429229 31 18 831 495 60 60 0 0 CC 11.127934 37 0 1018 0 KEEP NA NONE YES B[a]P_1 chr17 64212792 64212792 C G intergenic "Fbxl17(dist=362863),Fert2(dist=32575)" NA NA upstream Fert2 NA NA exonic ENSMUSG00000045506 nonsynonymous SNV ENSMUST00000050753:c.G349C:p.A117P 17qE1.1 NA NA chr17 64212792 CAGxCAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 139 0 0 52.114302 0.278481 0.02 1.092516 57 22 1564 619 60 60 0 0 CC 12.61462 42 0 1141 0 KEEP NA Fbxl17 NO B[a]P_1 chr17 65060192 65060192 T G exonic Man2a1 nonsynonymous SNV NM_008549:c.T2092G:p.S698A exonic Man2a1 nonsynonymous SNV uc008dfy.1:c.T2092G:p.S698A exonic ENSMUSG00000024085 nonsynonymous SNV ENSMUST00000086723:c.T2092G:p.S698A 17qE1.1 NA NA chr17 65060192 ATTxCAC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999997 88 0 0 21.03113 0.257143 0.02 -0.31569 26 9 725 254 60 60 0 0 TT 9.625619 32 0 898 0 KEEP + Man2a1 NO B[a]P_1 chr17 66475648 66475648 T G exonic Ddx11 nonsynonymous SNV NM_001003919:c.T132G:p.S44R exonic Ddx11 nonsynonymous SNV uc008dha.1:c.T132G:p.S44R exonic ENSMUSG00000035842 nonsynonymous SNV ENSMUST00000038387:c.T132G:p.S44R 17qE1.1 NA NA chr17 66475648 AAGxCCA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 171 0 0 43.940105 0.217391 0.02 0.889202 72 20 1935 553 60 60 0 0 TT 15.940841 53 0 1462 0 KEEP + Ddx11 NO B[a]P_1 chr17 69737083 69737083 C G exonic Zbtb14 nonsynonymous SNV NM_009547:c.C435G:p.C145W exonic Zfp161 nonsynonymous SNV uc008dkt.1:c.C435G:p.C145W exonic ENSMUSG00000049672 nonsynonymous SNV ENSMUST00000062369:c.C435G:p.C145W 17qE1.3 "Score=0.929128;Name=No.69042,chrX:8622875" NA chr17 69737083 TTGxCTC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 338 0 0 53.061545 0.159509 0.02 3.638932 137 26 3788 717 60 60 0 0 CC 38.486764 128 0 3506 0 KEEP + Zbtb14 NO B[a]P_1 chr17 71449328 71449328 C A exonic Myom1 nonsynonymous SNV NM_001083934:c.C3105A:p.D1035E exonic Myom1 nonsynonymous SNV uc008dly.1:c.C3105A:p.D1035E exonic ENSMUSG00000024049 nonsynonymous SNV ENSMUST00000024847:c.C3105A:p.D1035E 17qE1.3 NA NA chr17 71449328 TGAxGGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967358 0.967425 0.999931 86 0 0 62.6694 0.461538 0.02 1.239476 28 24 674 668 60 60 0 0 CC 7.512225 25 0 631 0 KEEP + Myom1 YES B[a]P_1 chr17 75261346 75261346 G A intronic Ttc27 NA NA intronic Ttc27 NA NA intronic ENSMUSG00000024078 NA NA 17qE2 NA NA chr17 75261346 GTAxATG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 167 2 0 85.195094 0.404762 0.02 0.958643 50 34 1428 936 60 60 0 0 GG 18.351605 61 0 1770 0 KEEP + Ttc27 NO B[a]P_1 chr17 78800069 78800069 G A exonic Fez2 synonymous SNV NM_199448:c.C789T:p.N263N exonic Fez2 synonymous SNV uc008dov.1:c.C789T:p.N263N exonic ENSMUSG00000056121 synonymous SNV ENSMUST00000070039:c.C789T:p.N263N 17qE3 NA NA chr17 78800069 CTTxTTC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 187 0 0 78.126173 0.318182 0.02 2.133329 75 35 2007 913 60 60 0 0 GG 18.348406 61 0 1712 0 KEEP - Fez2 NO B[a]P_1 chr17 9162395 9162395 G A exonic Pde10a synonymous SNV NM_011866:c.G1815A:p.L605L exonic Pde10a synonymous SNV uc008ajt.1:c.G1392A:p.L464L exonic ENSMUSG00000023868 synonymous SNV ENSMUST00000115708:c.G963A:p.L321L 17qA1 NA NA chr17 9162395 GCTxGAA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998131 0.9982 0.999931 117 0 0 14.524057 0.108108 0.02 1.046306 66 8 1866 217 60 60 0 0 GG 7.520719 25 0 716 0 KEEP + Pde10a NO B[a]P_1 chr17 91947507 91947507 C G intergenic "Nrxn1(dist=455365),Adcyap1(dist=1651255)" NA NA intergenic "Nrxn1(dist=455365),AB352058(dist=491787)" NA NA intergenic "ENSMUSG00000043346(dist=310401),ENSMUSG00000087425(dist=8960)" NA NA 17qE5 NA NA chr17 91947507 TCGxTGA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780565 0.78106 0.999366 64 2 6 20.463105 0.264706 0.02 -0.298084 25 9 686 247 60 60 0 0 CC 5.981533 20 0 540 0 KEEP NA Nrxn1 NO B[a]P_1 chr17 9861518 9861518 T A exonic Pabpc6 nonsynonymous SNV NM_001163836:c.A968T:p.E323V exonic Pabpc6 nonsynonymous SNV uc008ajy.2:c.A968T:p.E323V exonic ENSMUSG00000046173 nonsynonymous SNV ENSMUST00000057190:c.A968T:p.E323V 17qA1 NA NA chr17 9861518 AACxCCT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 222 0 0 8.483464 0.046875 0.02 2.072691 122 6 3421 161 60 60 0 0 TT 21.932377 73 0 2000 0 KEEP - Pabpc6 NO B[a]P_1 chr18 11880848 11880848 G T exonic Rbbp8 synonymous SNV NM_001081223:c.G1620T:p.G540G exonic Rbbp8 synonymous SNV uc008ebm.1:c.G735T:p.G245G exonic ENSMUSG00000041238 synonymous SNV ENSMUST00000047322:c.G1620T:p.G540G 18qA1 NA NA chr18 11880848 TGGxGAC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 104 0 0 14.440995 0.153846 0.02 1.230561 44 8 1242 203 60 60 0 0 GG 12.632293 42 0 1166 0 KEEP + Rbbp8 YES B[a]P_1 chr18 12312436 12312436 A T exonic Riok3 synonymous SNV NM_024182:c.A1359T:p.G453G exonic Riok3 synonymous SNV uc008eby.1:c.A1359T:p.G453G exonic ENSMUSG00000024404 synonymous SNV ENSMUST00000025270:c.A1359T:p.G453G 18qA1 NA NA chr18 12312436 AGGxGGA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 67 0 0 7.83847 0.16 0.02 -0.254307 21 4 594 107 60 60 0 0 AA 9.019884 30 0 820 0 KEEP + Riok3 NO B[a]P_1 chr18 20424536 20424536 C A intronic Dsg1c NA NA intronic Dsg1c NA NA intronic ENSMUSG00000034774 NA NA 18qA2 "Score=0.895343;Name=No.69609,chr18:20478085" NA chr18 20424536 CATxTTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 201 0 2 52.25617 0.263736 0.02 0.799517 67 24 1875 636 60 60 0 0 CC 25.269613 84 0 2408 0 KEEP + Dsg1c YES B[a]P_1 chr18 24629361 24629361 C A upstream 2700062C07Rik NA NA upstream 2700062C07Rik NA NA upstream ENSMUSG00000024273 NA NA 18qA2 NA NA chr18 24629361 CGGxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 214 2 0 60.841498 0.252427 0.02 2.487437 77 26 2043 737 60 60 0 0 CC 19.841191 66 0 1734 0 KEEP NA 2700062C07Rik YES B[a]P_1 chr18 31603761 31603761 C A exonic Syt4 stopgain SNV NM_009308:c.G193T:p.E65X exonic Syt4 stopgain SNV uc008ehy.1:c.G193T:p.E65X exonic ENSMUSG00000024261 stopgain SNV ENSMUST00000025110:c.G193T:p.E65X 18qB1 NA NA chr18 31603761 TTTxTGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 119 1 0 19.40943 0.15873 0.02 1.044948 53 10 1506 266 60 60 0 0 CC 12.634102 42 0 1205 0 KEEP - Syt4 YES B[a]P_1 chr18 34381348 34381348 A T ncRNA_exonic Gm10548 NA NA ncRNA_exonic AK160850 NA NA ncRNA_exonic ENSMUSG00000073607 NA NA 18qB1 NA NA chr18 34381348 GGTxGGC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 196 0 0 60.882429 0.305882 0.02 0.950242 59 26 1574 712 60 60 0 0 AA 23.441698 78 0 2075 0 KEEP - Gm10548 NO B[a]P_1 chr18 34381350 34381350 G T ncRNA_exonic Gm10548 NA NA ncRNA_exonic AK160850 NA NA ncRNA_exonic ENSMUSG00000073607 NA NA 18qB1 NA NA chr18 34381350 TAGxCTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 197 0 0 58.169792 0.287356 0.02 0.932375 62 25 1723 689 60 60 0 0 GG 23.42878 78 0 2070 0 KEEP - Gm10548 YES B[a]P_1 chr18 34811303 34811303 A T exonic Cdc23 nonsynonymous SNV NM_178347:c.T59A:p.V20E exonic Cdc23 nonsynonymous SNV uc008elb.1:c.T59A:p.V20E exonic ENSMUSG00000024370 nonsynonymous SNV ENSMUST00000025228:c.T59A:p.V20E 18qB1 NA NA chr18 34811303 GATxCGC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 281 0 0 38.556983 0.139706 0.02 2.189354 117 19 2886 533 60 60 0 0 AA 26.080448 87 0 2214 0 KEEP - Cdc23 NO B[a]P_1 chr18 34897273 34897273 G A intronic Cdc25c NA NA intronic Cdc25c NA NA exonic ENSMUSG00000078240 nonsynonymous SNV ENSMUST00000105038:c.G205A:p.A69T 18qB1 NA NA chr18 34897273 CACxCAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 122 0 0 19.831403 0.209302 0.02 -0.375977 34 9 829 251 60 60 0 0 GG 21.620951 72 0 1813 0 KEEP - Cdc25c NO B[a]P_1 chr18 34897509 34897509 T G intronic Cdc25c NA NA intronic Cdc25c NA NA exonic ENSMUSG00000078240 synonymous SNV ENSMUST00000105038:c.T441G:p.A147A 18qB1 NA NA chr18 34897509 TGCxCAG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 126 0 1 24.765283 0.307692 0.02 -0.341829 27 12 762 295 60 60 0 0 TT 20.696145 69 0 1855 0 KEEP - Cdc25c NO B[a]P_1 chr18 36526197 36526197 G C exonic Cystm1 nonsynonymous SNV NM_001081365:c.G10C:p.E4Q exonic 0610010O12Rik nonsynonymous SNV uc008eni.1:c.G10C:p.E4Q exonic ENSMUSG00000046727 nonsynonymous SNV ENSMUST00000050584:c.G10C:p.E4Q 18qB2 NA NA chr18 36526197 CCAxAGA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 62 0 0 17.581192 0.242424 0.02 -0.289385 25 8 715 217 60 60 0 0 GG 5.415082 18 0 519 0 KEEP + Cystm1 NO B[a]P_1 chr18 37128910 37128910 G T exonic Pcdha6 stopgain SNV NM_007767:c.G1501T:p.E501X exonic Pcdha6 stopgain SNV uc008epb.2:c.G1501T:p.E501X intronic ENSMUSG00000007440 NA NA 18qB2 NA NA chr18 37128910 GGCxAGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 235 0 0 106.433677 0.308219 0.02 2.30809 101 45 2468 1241 60 60 0 0 GG 17.730291 59 0 1507 0 KEEP + Pcdha6 YES B[a]P_1 chr18 37152129 37152129 T G exonic Pcdha8 nonsynonymous SNV NM_201243:c.T9G:p.C3W exonic Pcdha8 nonsynonymous SNV uc008epd.2:c.T9G:p.C3W intronic ENSMUSG00000007440 NA NA 18qB2 NA NA chr18 37152129 GTGxTTA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.983813 0.984161 0.999646 98 0 0 13.472419 0.12069 0.02 1.186673 51 7 1384 194 60 60 0 0 TT 9.023012 30 0 825 0 KEEP + Pcdha8 NO B[a]P_1 chr18 37250322 37250322 A T exonic Pcdhac1 nonsynonymous SNV NM_001003671:c.A533T:p.D178V exonic Pcdhac1 nonsynonymous SNV uc008epj.2:c.A533T:p.D178V exonic ENSMUSG00000007440 nonsynonymous SNV ENSMUST00000007584:c.A533T:p.D178V 18qB3 NA NA chr18 37250322 TCGxTGG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 222 0 0 83.039982 0.274809 0.02 2.340579 95 36 2550 993 60 60 0 0 AA 20.147358 67 0 1797 0 KEEP + Pcdhac1 NO B[a]P_1 chr18 37462782 37462782 T A exonic Pcdhb3 nonsynonymous SNV NM_053128:c.T2146A:p.C716S exonic Pcdhb3 nonsynonymous SNV uc008epo.1:c.T2146A:p.C716S exonic ENSMUSG00000045498 nonsynonymous SNV ENSMUST00000051754:c.T2146A:p.C716S 18qB3 NA NA chr18 37462782 CTGxGCA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 614 2 0 15.316509 0.030986 0.02 8.656068 344 11 9412 313 60 60 0 0 TT 57.425025 191 0 5128 0 KEEP + Pcdhb3 NO B[a]P_1 chr18 37609603 37609603 G T exonic Pcdhb14 nonsynonymous SNV NM_053139:c.G2107T:p.V703L exonic Pcdhb14 nonsynonymous SNV uc008epz.1:c.G2107T:p.V703L exonic ENSMUSG00000044043 nonsynonymous SNV ENSMUST00000052387:c.G2107T:p.V703L 18qB3 NA NA chr18 37609603 CTGxTGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 607 0 0 225.941078 0.309375 0.02 7.357706 221 99 6032 2647 60 60 0 0 GG 63.758331 212 0 5831 0 KEEP + Pcdhb14 YES B[a]P_1 chr18 38473059 38473059 G T intronic Rnf14 NA NA intronic Rnf14 NA NA intronic ENSMUSG00000060450 NA NA 18qB3 NA NA chr18 38473059 CTCxAGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800211 0.800245 0.999957 68 0 0 9.760221 0.142857 0.02 -0.306547 30 5 809 136 60 60 0 0 GG 7.820721 26 0 735 0 KEEP + Rnf14 YES B[a]P_1 chr18 46359206 46359206 G T intronic Trim36 NA NA exonic 1700018A14Rik synonymous SNV uc012bcq.1:c.G177T:p.P59P exonic ENSMUSG00000033993 synonymous SNV ENSMUST00000037090:c.G177T:p.P59P 18qC NA NA chr18 46359206 TCCxCAT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 178 1 0 65.686522 0.291667 0.02 0.944529 68 28 1672 775 60 60 0 0 GG 16.515048 55 0 1331 0 KEEP - Trim36 YES B[a]P_1 chr18 53065530 53065530 A C exonic Sncaip nonsynonymous SNV NM_001199151:c.A1661C:p.K554T exonic Sncaip nonsynonymous SNV uc008exm.2:c.A1661C:p.K554T exonic ENSMUSG00000024534 nonsynonymous SNV ENSMUST00000025413:c.A1661C:p.K554T 18qD1 NA NA chr18 53065530 GCAxGTC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934491 0.934492 0.999999 97 0 0 15.331217 0.195652 0.02 -0.40306 37 9 1044 209 60 60 0 0 AA 10.528172 35 0 985 0 KEEP + Sncaip NO B[a]P_1 chr18 57437327 57437327 G T exonic Megf10 nonsynonymous SNV NM_001001979:c.G2053T:p.D685Y exonic Megf10 nonsynonymous SNV uc008eyz.2:c.G2053T:p.D685Y exonic ENSMUSG00000024593 nonsynonymous SNV ENSMUST00000075770:c.G2053T:p.D685Y 18qD3 NA NA chr18 57437327 ATCxACA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 154 0 0 38.432993 0.236111 0.02 1.064335 55 17 1422 474 60 60 0 0 GG 16.766985 61 1 1618 14 KEEP + Megf10 YES B[a]P_1 chr18 61165448 61165448 C A exonic Slc6a7 nonsynonymous SNV NM_201353:c.G641T:p.R214L exonic Slc6a7 nonsynonymous SNV uc008fbi.1:c.G641T:p.R214L exonic ENSMUSG00000052026 nonsynonymous SNV ENSMUST00000025520:c.G641T:p.R214L 18qE1 NA NA chr18 61165448 CAGxGAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999919 0.999919 1 158 2 0 29.158166 0.147368 0.02 0.962411 81 14 1948 397 60 60 0 0 CC 14.71532 49 0 1173 0 KEEP - Slc6a7 YES B[a]P_1 chr18 61359031 61359031 G C exonic Slc26a2 nonsynonymous SNV NM_007885:c.C981G:p.D327E exonic Slc26a2 nonsynonymous SNV uc008fbu.1:c.C981G:p.D327E exonic ENSMUSG00000034320 nonsynonymous SNV ENSMUST00000037603:c.C276G:p.D92E 18qE1 NA NA chr18 61359031 CTTxTCC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918042 0.918171 0.999859 64 0 0 14.974636 0.159091 0.02 -0.385562 37 7 1001 200 60 60 0 0 GG 5.413861 18 0 497 0 KEEP - Slc26a2 NO B[a]P_1 chr18 61447794 61447794 C A exonic Pde6a synonymous SNV NM_146086:c.C2514A:p.S838S exonic Pde6a synonymous SNV uc008fbv.1:c.C2514A:p.S838S exonic ENSMUSG00000024575 synonymous SNV ENSMUST00000167693:c.C375A:p.S125S 18qE1 NA NA chr18 61447794 TTCxGGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9937 0.993703 0.999997 116 0 0 36.990079 0.246154 0.02 1.223909 49 16 1259 451 60 60 0 0 CC 8.417676 28 0 739 0 KEEP + Pde6a YES B[a]P_1 chr18 62818474 62818474 T G exonic Spink10 synonymous SNV NM_177829:c.T297G:p.T99T exonic Spink10 synonymous SNV uc008fdf.1:c.T297G:p.T99T exonic ENSMUSG00000044176 synonymous SNV ENSMUST00000162511:c.T75G:p.T25T 18qE1 NA NA chr18 62818474 TACxTTT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 137 2 0 47.230656 0.2875 0.02 0.895996 57 23 1574 571 60 60 0 0 TT 11.730408 39 0 1083 0 KEEP + Spink10 NO B[a]P_1 chr18 66152722 66152722 C A intronic Lman1 NA NA intronic Lman1 NA NA intronic ENSMUSG00000041891 NA NA 18qE1 NA NA chr18 66152722 GACxCCT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.737075 0.739671 0.99649 56 0 0 21.184392 0.290323 0.02 -0.280604 22 9 617 250 60 60 0 0 CC 4.511738 15 0 416 0 KEEP - Lman1 YES B[a]P_1 chr18 67476666 67476666 G T exonic Impa2 nonsynonymous SNV NM_053261:c.G736T:p.G246C exonic Impa2 nonsynonymous SNV uc008fly.1:c.G736T:p.G246C exonic ENSMUSG00000024525 nonsynonymous SNV ENSMUST00000025403:c.G736T:p.G246C 18qE1 NA NA chr18 67476666 GGCxGCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 245 0 0 61.004658 0.22314 0.02 2.330041 94 27 2361 760 60 60 0 0 GG 27.30051 91 0 2291 0 KEEP + Impa2 YES B[a]P_1 chr18 71465666 71465666 C T exonic Dcc synonymous SNV NM_007831:c.G3858A:p.T1286T exonic Dcc synonymous SNV uc008fop.1:c.G3858A:p.T1286T exonic ENSMUSG00000060534 synonymous SNV ENSMUST00000073379:c.G3798A:p.T1266T 18qE2 NA NA chr18 71465666 CAGxGTT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989541 0.989542 0.999999 115 0 0 42.725938 0.295082 0.02 1.160663 43 18 1055 502 60 60 0 0 CC 10.514082 35 0 853 0 KEEP - Dcc NO B[a]P_1 chr18 80646289 80646289 C A exonic Ctdp1 nonsynonymous SNV NM_026295:c.G1729T:p.D577Y exonic Ctdp1 nonsynonymous SNV uc008ftb.1:c.G1729T:p.D577Y exonic ENSMUSG00000033323 nonsynonymous SNV ENSMUST00000036229:c.G1729T:p.D577Y 18qE3 NA NA chr18 80646289 CATxGTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 371 0 0 61.03328 0.148837 0.02 4.977125 183 32 4883 850 60 60 0 0 CC 35.173764 117 0 3154 0 KEEP - Ctdp1 YES B[a]P_1 chr18 82793747 82793747 C A exonic Zfp236 nonsynonymous SNV NM_177832:c.G3265T:p.V1089L exonic Zfp236 nonsynonymous SNV uc008fub.2:c.G3265T:p.V1089L exonic ENSMUSG00000041258 nonsynonymous SNV ENSMUST00000171071:c.G3265T:p.V1089L 18qE3 NA NA chr18 82793747 ACAxTGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 209 0 0 31.663593 0.166667 0.02 0.844685 80 16 2219 428 60 60 0 0 CC 24.966554 83 0 2339 0 KEEP - Zfp236 YES B[a]P_1 chr18 84264161 84264161 T G exonic Zadh2 nonsynonymous SNV NM_146090:c.T569G:p.V190G exonic Zadh2 nonsynonymous SNV uc008fun.1:c.T569G:p.V190G exonic ENSMUSG00000049090 nonsynonymous SNV ENSMUST00000060223:c.T569G:p.V190G 18qE4 NA NA chr18 84264161 CTGxGCA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 111 0 0 35.093741 0.262295 0.02 1.160433 45 16 1203 427 60 60 0 0 TT 12.011568 40 0 1038 0 KEEP + Zadh2 NO B[a]P_1 chr18 84264162 84264162 G T exonic Zadh2 synonymous SNV NM_146090:c.G570T:p.V190V exonic Zadh2 synonymous SNV uc008fun.1:c.G570T:p.V190V exonic ENSMUSG00000049090 synonymous SNV ENSMUST00000060223:c.G570T:p.V190V 18qE4 NA NA chr18 84264162 TGTxCAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 110 0 0 36.631864 0.266667 0.02 1.169456 44 16 1198 441 60 60 0 0 GG 12.022763 40 0 1112 0 KEEP + Zadh2 YES B[a]P_1 chr18 84581687 84581687 C A intronic Zfp407 NA NA exonic Zfp407 nonsynonymous SNV uc008fup.1:c.G26T:p.R9L intronic ENSMUSG00000048410 NA NA 18qE4 NA NA chr18 84581687 AAGxGGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 270 0 0 60.183966 0.241071 0.02 2.510522 85 27 2053 741 60 60 0 0 CC 31.752013 106 0 2676 0 KEEP - Zfp407 YES B[a]P_1 chr18 84838331 84838331 A G exonic Cndp2 nonsynonymous SNV NM_023149:c.T1202C:p.L401P exonic Cndp2 nonsynonymous SNV uc008fut.1:c.T1202C:p.L401P exonic ENSMUSG00000024644 stoploss SNV ENSMUST00000097500:c.T1201C:p.X401R 18qE4 NA NA chr18 84838331 TTCxGGG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948269 0.948402 0.99986 78 0 0 40.280079 0.375 0.02 -0.420677 30 18 845 455 60 60 0 0 AA 5.413681 18 0 494 0 KEEP - Cndp2 NO B[a]P_1 chr18 9345268 9345268 T G exonic Ccny nonsynonymous SNV NM_026484:c.A503C:p.Q168P exonic Ccny nonsynonymous SNV uc012azd.1:c.A428C:p.Q143P exonic ENSMUSG00000024286 nonsynonymous SNV ENSMUST00000115867:c.A428C:p.Q143P 18qA1 NA NA chr18 9345268 TTCxGTT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.99986 49 0 0 10.249089 0.2 0.02 -0.263007 24 6 673 139 60 60 0 0 TT 5.71455 19 0 525 0 KEEP - Ccny NO B[a]P_1 chr19 10275351 10275351 C T exonic Fen1 nonsynonymous SNV NM_001271614:c.G218A:p.R73H exonic Fen1 nonsynonymous SNV uc008gpf.1:c.G218A:p.R73H exonic ENSMUSG00000024742 nonsynonymous SNV ENSMUST00000167933:c.G218A:p.R73H 19qA NA NA chr19 10275351 ATGxGGA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 304 1 0 106.679573 0.265537 0.02 3.535675 130 47 3168 1287 60 60 0 0 CC 30.021775 100 0 2494 0 KEEP - Fen1 NO B[a]P_1 chr19 10787156 10787156 C T exonic Vps37c nonsynonymous SNV NM_181403:c.C491T:p.P164L exonic Vps37c nonsynonymous SNV uc008gqr.1:c.C167T:p.P56L exonic ENSMUSG00000048832 nonsynonymous SNV ENSMUST00000087951:c.C491T:p.P164L 19qA NA NA chr19 10787156 TGCxGGA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963707 0.963774 0.999931 81 0 0 60.328185 0.45098 0.02 1.346485 28 23 740 646 60 60 0 0 CC 7.212124 24 0 603 0 KEEP + Vps37c NO B[a]P_1 chr19 10939878 10939878 G A exonic Tmem132a nonsynonymous SNV NM_133804:c.C722T:p.P241L exonic Tmem132a nonsynonymous SNV uc008grc.1:c.C722T:p.P241L exonic ENSMUSG00000024736 nonsynonymous SNV ENSMUST00000025645:c.C722T:p.P241L 19qA NA NA chr19 10939878 TGTxGGG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999316 0.999317 0.999999 129 0 0 25.519446 0.160494 0.02 1.083255 68 13 1905 348 60 60 0 0 GG 10.52732 35 0 986 0 KEEP - Tmem132a NO B[a]P_1 chr19 12907216 12907216 T G exonic Lpxn synonymous SNV NM_134152:c.T861G:p.T287T exonic Lpxn synonymous SNV uc008guq.1:c.T861G:p.T287T exonic ENSMUSG00000024696 synonymous SNV ENSMUST00000025601:c.T861G:p.T287T 19qA NA NA chr19 12907216 CACxGTC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780965 0.78106 0.999879 58 0 0 17.563523 0.235294 0.02 -0.298117 26 8 719 218 60 60 0 0 TT 6.616377 22 0 598 0 KEEP + Lpxn NO B[a]P_1 chr19 12959225 12959225 C A exonic Olfr1445 nonsynonymous SNV NM_146699:c.C853A:p.P285T exonic Olfr1445 nonsynonymous SNV uc008gus.1:c.C853A:p.P285T exonic ENSMUSG00000045126 nonsynonymous SNV ENSMUST00000049624:c.C853A:p.P285T 19qA "Score=0.93125;Name=No.72624,chr19:12993889" NA chr19 12959225 AACxCTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 106 0 0 26.007433 0.222222 0.02 1.123835 42 12 1171 327 60 60 0 0 CC 14.137794 47 0 1324 0 KEEP + Olfr1445 YES B[a]P_1 chr19 13028453 13028453 G T exonic Olfr1450 nonsynonymous SNV NM_146371:c.G373T:p.A125S exonic Olfr1450 nonsynonymous SNV uc008guz.1:c.G373T:p.A125S exonic ENSMUSG00000062892 nonsynonymous SNV ENSMUST00000082006:c.G373T:p.A125S 19qA NA NA chr19 13028453 GCTxCAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 214 1 0 29.332378 0.111111 0.02 2.207946 120 15 3250 426 60 60 0 0 GG 19.250377 64 0 1790 0 KEEP + Olfr1450 YES B[a]P_1 chr19 13074282 13074282 G T exonic Olfr1451 nonsynonymous SNV NM_146705:c.G805T:p.D269Y exonic Olfr1451 nonsynonymous SNV uc008gva.1:c.G805T:p.D269Y exonic ENSMUSG00000046913 nonsynonymous SNV ENSMUST00000063144:c.G805T:p.D269Y 19qA NA NA chr19 13074282 GCAxATA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 118 0 0 24.145335 0.181818 0.02 1.018776 54 12 1518 320 60 60 0 0 GG 11.130738 37 0 1061 0 KEEP + Olfr1451 YES B[a]P_1 chr19 17273703 17273703 C T exonic Prune2 synonymous SNV NM_181348:c.C8781T:p.F2927F exonic Prune2 synonymous SNV uc008gxf.2:c.C534T:p.F178F exonic ENSMUSG00000039126 synonymous SNV ENSMUST00000099594:c.C534T:p.F178F 19qB NA NA chr19 17273703 TTTxCTG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979524 0.979526 0.999998 96 0 0 21.565192 0.178571 0.02 1.20413 46 10 1311 282 60 60 0 0 CC 8.587229 32 1 894 9 KEEP + Prune2 NO B[a]P_1 chr19 19185067 19185067 C A UTR5 Rorb NA NA UTR5 Rorb NA NA UTR5 ENSMUSG00000036192 NA NA 19qB NA NA chr19 19185067 CTGxTCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992923 0.992926 0.999997 117 0 0 19.336791 0.15625 0.02 1.134107 54 10 1489 266 60 60 0 0 CC 9.324869 31 0 874 0 KEEP - Rorb YES B[a]P_1 chr19 25168794 25168794 C A intronic Dock8 NA NA intronic Dock8 NA NA intronic ENSMUSG00000052085 NA NA 19qB NA NA chr19 25168794 ACTxACT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 71 0 0 14.337127 0.212121 0.02 -0.289375 26 7 735 184 60 60 0 0 CC 10.528978 35 0 1001 0 KEEP + Dock8 YES B[a]P_1 chr19 29101805 29101805 T G exonic Ak3 nonsynonymous SNV NM_021299:c.A300C:p.E100D exonic Ak3 nonsynonymous SNV uc008hcx.1:c.A300C:p.E100D exonic ENSMUSG00000024782 nonsynonymous SNV ENSMUST00000025696:c.A300C:p.E100D 19qC1 NA NA chr19 29101805 GGCxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 53 0 0 12.553231 0.212121 0.02 -0.288806 26 7 718 166 60 60 0 0 TT 5.414158 18 0 501 0 KEEP - Ak3 NO B[a]P_1 chr19 29675297 29675297 T C intronic C030046E11Rik NA NA intronic "C030046E11Rik,mKIAA1432" NA NA intronic ENSMUSG00000038658 NA NA 19qC1 NA NA chr19 29675297 GACxTAC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 133 0 0 11.319343 0.086957 0.02 1.090126 63 6 1785 173 60 60 0 0 TT 15.039498 50 0 1396 0 KEEP + C030046E11Rik NO B[a]P_1 chr19 30623302 30623302 G T exonic Dkk1 nonsynonymous SNV NM_010051:c.C381A:p.H127Q exonic Dkk1 nonsynonymous SNV uc008hen.1:c.C381A:p.H127Q exonic ENSMUSG00000024868 nonsynonymous SNV ENSMUST00000025803:c.C381A:p.H127Q 19qC1 NA NA chr19 30623302 AGCxTGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979524 0.979526 0.999998 99 0 0 21.371487 0.178571 0.02 1.204676 46 10 1090 280 60 60 0 0 GG 10.197588 34 0 816 0 KEEP - Dkk1 YES B[a]P_1 chr19 30861384 30861384 C T exonic Prkg1 synonymous SNV NM_001013833:c.G795A:p.Q265Q exonic Prkg1 synonymous SNV uc008heo.1:c.G840A:p.Q280Q exonic ENSMUSG00000052920 synonymous SNV ENSMUST00000065067:c.G795A:p.Q265Q 19qC1 NA NA chr19 30861384 TACxTGC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 416 0 0 129.212157 0.287234 0.02 3.633761 134 54 3782 1524 60 60 0 0 CC 50.234037 167 0 4711 0 KEEP - Prkg1 NO B[a]P_1 chr19 34401643 34401643 G A exonic Fas synonymous SNV NM_007987:c.G813A:p.L271L exonic Fas synonymous SNV uc008hgi.2:c.G813A:p.L271L exonic ENSMUSG00000024778 synonymous SNV ENSMUST00000025691:c.G813A:p.L271L 19qC1 NA NA chr19 34401643 CCTxTGC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 69 0 0 14.781374 0.241379 0.02 -0.254283 22 7 613 184 60 60 0 0 GG 8.722677 29 0 808 0 KEEP + Fas NO B[a]P_1 chr19 34648274 34648274 A T exonic Ifit2 synonymous SNV NM_008332:c.A723T:p.A241A exonic Ifit2 synonymous SNV uc008hgn.2:c.A723T:p.A241A exonic ENSMUSG00000045932 synonymous SNV ENSMUST00000102826:c.A723T:p.A241A 19qC1 NA NA chr19 34648274 TGCxATA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 93 0 0 17.705753 0.157895 0.02 1.097551 48 9 1319 242 60 60 0 0 AA 8.421367 28 0 769 0 KEEP + Ifit2 NO B[a]P_1 chr19 36131681 36131681 C A exonic Htr7 synonymous SNV NM_008315:c.G63T:p.L21L exonic Htr7 synonymous SNV uc008hhd.1:c.G63T:p.L21L exonic ENSMUSG00000024798 synonymous SNV ENSMUST00000099505:c.G63T:p.L21L 19qC2 NA NA chr19 36131681 CGGxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99962 0.999622 0.999998 135 0 0 29.177453 0.164706 0.02 1.048462 71 14 1949 390 60 60 0 0 CC 10.226792 34 0 953 0 KEEP - Htr7 YES B[a]P_1 chr19 38477794 38477794 G T exonic Slc35g1 nonsynonymous SNV NM_175507:c.G1033T:p.V345L exonic Tmem20 nonsynonymous SNV uc012blh.1:c.G595T:p.V199L exonic ENSMUSG00000044026 nonsynonymous SNV ENSMUST00000054098:c.G1033T:p.V345L 19qC3 NA NA chr19 38477794 ACGxTGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 120 0 0 30.704207 0.225806 0.02 1.134188 48 14 1306 384 60 60 0 0 GG 13.221109 44 0 1192 0 KEEP + Slc35g1 YES B[a]P_1 chr19 3902858 3902858 A C intronic Tcirg1 NA NA intronic Tcirg1 NA NA intronic ENSMUSG00000001750 NA NA 19qA NA NA chr19 3902858 CCGxGTG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999621 0.999622 0.999999 140 2 0 13.821137 0.094118 0.02 0.949844 77 8 2183 215 60 60 0 0 AA 10.761794 36 0 954 0 KEEP - Tcirg1 NO B[a]P_1 chr19 4324863 4324863 C T exonic Kdm2a nonsynonymous SNV NM_001001984:c.G2239A:p.D747N exonic Kdm2a nonsynonymous SNV uc008fzw.1:c.G2239A:p.D747N exonic ENSMUSG00000054611 nonsynonymous SNV ENSMUST00000047898:c.G2239A:p.D747N 19qA NA NA chr19 4324863 GGTxGCT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99712 0.997163 0.999957 101 0 0 8.253706 0.070423 0.02 0.976872 66 5 1629 137 60 60 0 0 CC 7.510416 25 0 638 0 KEEP - Kdm2a NO B[a]P_1 chr19 45811482 45811482 A T exonic Fgf8 stoploss SNV NM_001166362:c.T646A:p.X216K exonic Fgf8 stoploss SNV uc008hrh.2:c.T613A:p.X205K exonic ENSMUSG00000025219 stoploss SNV ENSMUST00000111924:c.T421A:p.X141K 19qC3 NA NA chr19 45811482 CCTxTCG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979389 0.979526 0.99986 88 2 0 11.291633 0.107143 0.02 1.204309 50 6 1316 167 60 60 0 0 AA 5.710643 19 0 482 0 KEEP - Fgf8 NO B[a]P_1 chr19 46589782 46589782 C G exonic Trim8 nonsynonymous SNV NM_053100:c.C1282G:p.L428V exonic Trim8 nonsynonymous SNV uc008hts.1:c.C1282G:p.L428V exonic ENSMUSG00000025034 nonsynonymous SNV ENSMUST00000026008:c.C1282G:p.L428V 19qC3 NA NA chr19 46589782 GCTxTGC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 147 0 0 8.548282 0.061728 0.02 0.976112 76 5 2168 143 60 60 0 0 CC 15.027869 50 0 1395 0 KEEP + Trim8 NO B[a]P_1 chr19 4732583 4732583 T G exonic Sptbn2 nonsynonymous SNV NM_021287:c.T1546G:p.L516V exonic Spnb3 nonsynonymous SNV uc008gan.1:c.T1546G:p.L516V exonic ENSMUSG00000067889 nonsynonymous SNV ENSMUST00000008991:c.T1546G:p.L516V 19qA NA NA chr19 4732583 TTCxTAC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 276 4 0 34.963622 0.125786 0.02 3.496165 139 20 3788 515 60 60 0 0 TT 24.956887 83 0 2257 0 KEEP + Sptbn2 NO B[a]P_1 chr19 47826337 47826337 T A exonic Wdr96 nonsynonymous SNV NM_027559:c.A3886T:p.M1296L exonic D19Ertd652e nonsynonymous SNV uc008hvm.2:c.A526T:p.M176L exonic ENSMUSG00000044948 nonsynonymous SNV ENSMUST00000160247:c.A3886T:p.M1296L 19qD1 NA NA chr19 47826337 ACAxGTC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 155 2 0 8.693276 0.060241 0.02 0.967476 78 5 2120 145 60 60 0 0 TT 13.833159 46 0 1238 0 KEEP - Wdr96 NO B[a]P_1 chr19 48768411 48768411 G C exonic Sorcs3 nonsynonymous SNV NM_025696:c.G1394C:p.G465A exonic Sorcs3 nonsynonymous SNV uc008hvx.1:c.G1394C:p.G465A exonic ENSMUSG00000063434 nonsynonymous SNV ENSMUST00000078880:c.G1394C:p.G465A 19qD1 NA NA chr19 48768411 GTGxGAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 135 0 0 27.403881 0.228571 0.02 1.08176 54 16 1490 361 60 60 0 0 GG 14.738283 49 0 1359 0 KEEP + Sorcs3 NO B[a]P_1 chr19 5027102 5027102 A T exonic Slc29a2 nonsynonymous SNV NM_007854:c.A490T:p.S164C exonic Slc29a2 nonsynonymous SNV uc008gbv.2:c.A490T:p.S164C exonic ENSMUSG00000024891 nonsynonymous SNV ENSMUST00000025826:c.A490T:p.S164C 19qA NA NA chr19 5027102 CTCxGTG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 371 1 0 158.786461 0.285106 0.02 4.694527 168 67 4724 1878 60 60 0 0 AA 27.971521 93 0 2577 0 KEEP + Slc29a2 NO B[a]P_1 chr19 5053089 5053089 T C exonic Rin1 nonsynonymous SNV NM_145495:c.T1372C:p.F458L exonic Rin1 nonsynonymous SNV uc008gca.1:c.T1372C:p.F458L exonic ENSMUSG00000024883 nonsynonymous SNV ENSMUST00000025818:c.T1372C:p.F458L 19qA NA NA chr19 5053089 GGCxTCC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 264 0 0 23.791713 0.092199 0.02 2.154144 128 13 3534 364 60 60 0 0 TT 28.263854 94 0 2551 0 KEEP + Rin1 NO B[a]P_1 chr19 5307448 5307448 G C exonic Gal3st3 nonsynonymous SNV NM_001024717:c.G850C:p.A284P exonic Gal3st3 nonsynonymous SNV uc008gco.2:c.G850C:p.A284P exonic ENSMUSG00000047658 nonsynonymous SNV ENSMUST00000061169:c.G850C:p.A284P 19qA NA NA chr19 5307448 CTGxCGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99986 0.999862 0.999998 142 0 0 22.933499 0.131868 0.02 0.995906 79 12 2148 326 60 60 0 0 GG 10.209381 34 0 906 0 KEEP + Gal3st3 NO B[a]P_1 chr19 53313973 53313973 A G exonic Add3 nonsynonymous SNV NM_001164099:c.A1598G:p.K533R exonic Add3 nonsynonymous SNV uc008hwi.2:c.A1598G:p.K533R exonic ENSMUSG00000025026 nonsynonymous SNV ENSMUST00000050096:c.A1598G:p.K533R 19qD2 NA NA chr19 53313973 ACAxGCC A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 194 0 0 19.102154 0.11236 0.02 0.816935 79 10 2217 279 60 60 0 0 AA 24.354808 81 0 2224 0 KEEP + Add3 NO B[a]P_1 chr19 57117429 57117429 T G intronic Ablim1 NA NA intronic Ablim1 NA NA intronic ENSMUSG00000025085 NA NA 19qD2 NA NA chr19 57117429 GTGxCAG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 181 0 0 20.832831 0.126437 0.02 0.932442 76 11 2074 299 60 60 0 0 TT 21.340506 71 0 1906 0 KEEP - Ablim1 NO B[a]P_1 chr19 6059097 6059097 C G intronic Fau NA NA intronic Fau NA NA intronic ENSMUSG00000038274 NA NA 19qA NA NA chr19 6059097 GGGxGTG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 95 0 0 16.931022 0.166667 0.02 -0.420814 40 8 1062 225 60 60 0 0 CC 12.325501 41 0 1085 0 KEEP + Fau NO B[a]P_1 chr19 60887521 60887521 G A UTR5 Fam45a NA NA UTR5 Fam45a NA NA UTR5 ENSMUSG00000024993 NA NA 19qD3 NA NA chr19 60887521 GAAxATG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 171 0 0 73.144596 0.306931 0.02 2.496026 70 31 1979 854 60 60 0 0 GG 12.61608 42 0 1150 0 KEEP + Fam45a NO B[a]P_1 chr19 61148418 61148418 G T intronic Grk5 NA NA UTR5 Grk5 NA NA ncRNA_intronic ENSMUSG00000074733 NA NA 19qD3 NA NA chr19 61148418 AAGxGGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 93 0 0 16.791934 0.173913 0.02 -0.403375 38 8 1065 222 60 60 0 0 GG 11.728809 39 0 1067 0 KEEP + Grk5 YES B[a]P_1 chr19 6928813 6928813 G T exonic Ccdc88b synonymous SNV NM_001081291:c.C1335A:p.A445A exonic Ccdc88b synonymous SNV uc008gjb.1:c.C1335A:p.A445A exonic ENSMUSG00000047810 synonymous SNV ENSMUST00000113440:c.C1335A:p.A445A 19qA NA NA chr19 6928813 GGAxGCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 200 4 0 53.790906 0.235294 0.02 2.487344 78 24 2177 665 60 60 0 0 GG 17.136988 57 0 1600 0 KEEP - Ccdc88b YES B[a]P_1 chr19 7496859 7496859 G T exonic 2700081O15Rik stopgain SNV NM_175381:c.G1480T:p.E494X exonic 2700081O15Rik stopgain SNV uc008gla.1:c.G661T:p.E221X exonic ENSMUSG00000053080 stopgain SNV ENSMUST00000160561:c.G661T:p.E221X 19qA NA NA chr19 7496859 CCGxAGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.850137 0.851984 0.997832 67 0 0 9.166936 0.131579 0.02 -0.333209 33 5 926 132 60 60 0 0 GG 4.812941 16 0 452 0 KEEP + 2700081O15Rik YES B[a]P_1 chr19 8684190 8684190 A C exonic Slc22a8 nonsynonymous SNV NM_001164634:c.A1256C:p.K419T exonic Slc22a8 nonsynonymous SNV uc008gmd.2:c.A1256C:p.K419T exonic ENSMUSG00000063796 nonsynonymous SNV ENSMUST00000170817:c.A1256C:p.K419T 19qA NA NA chr19 8684190 GGAxGGG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 118 0 0 9.408866 0.103448 0.02 0.99184 52 6 1418 149 60 60 0 0 AA 14.126918 47 0 1286 0 KEEP + Slc22a8 NO B[a]P_1 chr19 8838277 8838277 C T exonic Nxf1 stopgain SNV NM_001276704:c.C541T:p.R181X exonic Nxf1 stopgain SNV uc008gmr.1:c.C541T:p.R181X exonic ENSMUSG00000010097 stopgain SNV ENSMUST00000010241:c.C541T:p.R181X 19qA NA NA chr19 8838277 GATxGAG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 140 0 0 19.382292 0.121951 0.02 0.967914 72 10 1825 278 60 60 0 0 CC 12.013277 40 0 1003 0 KEEP + Nxf1 NO B[a]P_1 chr19 8905998 8905998 T G exonic Hnrnpul2 nonsynonymous SNV NM_001081196:c.T2211G:p.N737K exonic Hnrnpul2 nonsynonymous SNV uc008gng.1:c.T2211G:p.N737K exonic ENSMUSG00000071659 nonsynonymous SNV ENSMUST00000096753:c.T2211G:p.N737K 19qA NA NA chr19 8905998 GAAxTAC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 222 0 0 10.571908 0.066038 0.02 2.265324 99 7 2706 184 60 60 0 0 TT 24.660455 82 0 2253 0 KEEP + Hnrnpul2 NO B[a]P_1 chr19 8921978 8921978 T G exonic Bscl2 nonsynonymous SNV NM_008144:c.T934G:p.F312V exonic Bscl2 nonsynonymous SNV uc008gnl.2:c.T754G:p.F252V exonic ENSMUSG00000071657 nonsynonymous SNV ENSMUST00000159653:c.T316G:p.F106V 19qA NA NA chr19 8921978 CTCxTCA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 432 0 0 15.514209 0.048 0.02 5.299157 238 12 6657 306 60 60 0 0 TT 38.767629 134 2 3701 13 KEEP + Bscl2 NO B[a]P_1 chr1 11051437 11051437 G A exonic Prex2 nonsynonymous SNV NM_029525:c.G148A:p.A50T exonic Prex2 nonsynonymous SNV uc007ahs.2:c.G148A:p.A50T exonic ENSMUSG00000048960 nonsynonymous SNV ENSMUST00000027056:c.G148A:p.A50T 1qA2 NA NA chr1 11051437 GCAxCAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 92 0 0 19.882026 0.243243 0.02 -0.324424 28 9 771 245 60 60 0 0 GG 11.430497 38 0 1071 0 KEEP + Prex2 NO B[a]P_1 chr1 120738583 120738583 C A exonic Gli2 synonymous SNV NM_001081125:c.G1815T:p.R605R exonic Gli2 synonymous SNV uc007cim.1:c.G1815T:p.R605R exonic ENSMUSG00000048402 synonymous SNV ENSMUST00000062483:c.G1815T:p.R605R 1qE2.3 NA NA chr1 120738583 TCCxCGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 149 1 0 25.122679 0.154762 0.02 1.057883 71 13 1968 346 60 60 0 1 CC 11.42421 38 0 1036 0 KEEP - Gli2 YES B[a]P_1 chr1 132954531 132954531 C A intronic Mapkapk2 NA NA intronic Mapkapk2 NA NA intronic ENSMUSG00000016528 NA NA 1qE4 NA NA chr1 132954531 TGAxAGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999998 97 0 0 34.403525 0.277778 0.02 1.123886 39 15 1049 411 60 60 0 0 CC 10.22623 34 0 942 0 KEEP - Mapkapk2 YES B[a]P_1 chr1 134390888 134390888 A G exonic Rbbp5 synonymous SNV NM_172517:c.A948G:p.G316G exonic Rbbp5 synonymous SNV uc007cow.2:c.A948G:p.G316G exonic ENSMUSG00000026439 synonymous SNV ENSMUST00000027700:c.A948G:p.G316G 1qE4 NA NA chr1 134390888 TGGxGTG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 283 0 0 9.794422 0.055046 0.02 2.532997 103 6 2909 170 60 60 0 0 AA 38.181565 127 0 3510 0 KEEP + Rbbp5 NO B[a]P_1 chr1 134412079 134412079 G T UTR3 Cntn2 NA NA UTR3 Cntn2 NA NA exonic ENSMUSG00000053024 nonsynonymous SNV ENSMUST00000086522:c.C945A:p.D315E 1qE4 NA NA chr1 134412079 GGTxTCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 216 2 0 45.164205 0.1875 0.02 2.40008 91 21 2361 586 60 60 0 0 GG 22.540312 75 0 2048 0 KEEP - Cntn2 YES B[a]P_1 chr1 135253115 135253115 C G exonic "Ren1,Ren2" nonsynonymous SNV NM_031192:c.C640G:p.Q214E exonic Ren1 nonsynonymous SNV uc007cqf.1:c.C640G:p.Q214E exonic ENSMUSG00000070645 nonsynonymous SNV ENSMUST00000094556:c.C640G:p.Q214E 1qE4 NA NA chr1 135253115 TCCxAGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 294 0 0 21.346648 0.11215 0.02 2.075892 95 12 2638 319 60 60 0 0 CC 36.397538 121 0 3432 0 KEEP + Ren1 NO B[a]P_1 chr1 135262243 135262243 C A exonic Etnk2 nonsynonymous SNV NM_175443:c.C346A:p.R116S exonic Etnk2 nonsynonymous SNV uc007cqi.2:c.C37A:p.R13S exonic ENSMUSG00000070644 nonsynonymous SNV ENSMUST00000129213:c.C37A:p.R13S 1qE4 NA NA chr1 135262243 GAGxGCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 255 0 0 28.987471 0.113636 0.02 2.233979 117 15 2973 421 60 60 0 0 CC 26.122063 90 1 2306 7 KEEP + Etnk2 YES B[a]P_1 chr1 135554614 135554614 T A exonic Zbed6 nonsynonymous SNV NM_001166552:c.A1561T:p.N521Y exonic Zbed6 nonsynonymous SNV uc007cqr.2:c.A1561T:p.N521Y intronic ENSMUSG00000026464 NA NA 1qE4 NA NA chr1 135554614 AATxGGG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423426 0.423478 0.999879 47 0 0 8.070416 0.190476 0.02 -0.184142 17 4 474 106 60 60 0 0 TT 6.616468 22 0 601 0 KEEP - Zbed6 NO B[a]P_1 chr1 137815533 137815533 G T exonic Pkp1 nonsynonymous SNV NM_019645:c.C57A:p.D19E exonic Pkp1 nonsynonymous SNV uc007cub.1:c.C57A:p.D19E exonic ENSMUSG00000026413 nonsynonymous SNV ENSMUST00000027667:c.C57A:p.D19E 1qE4 NA NA chr1 137815533 GTTxTCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 140 0 0 39.346034 0.24 0.02 1.03773 57 18 1513 487 60 60 0 0 GG 17.738462 59 0 1567 0 KEEP - Pkp1 YES B[a]P_1 chr1 137850655 137850655 C A intronic Igfn1 NA NA intronic Igfn1 NA NA intronic ENSMUSG00000051985 NA NA 1qE4 NA NA chr1 137850655 GGAxAGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.455625 0.457757 0.995343 38 0 0 14.0652 0.272727 0.02 -0.192921 16 6 449 168 60 60 0 0 CC 4.202036 14 0 382 0 KEEP - Igfn1 YES B[a]P_1 chr1 137967551 137967551 C T exonic Cacna1s synonymous SNV NM_001081023:c.C606T:p.L202L exonic Cacna1s synonymous SNV uc007cuf.1:c.C606T:p.L202L exonic ENSMUSG00000026407 synonymous SNV ENSMUST00000057096:c.C606T:p.L202L 1qE4 NA NA chr1 137967551 GCTxGTC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 244 1 0 143.686217 0.369427 0.02 3.808205 99 58 2382 1609 60 60 0 0 CC 18.922472 63 0 1523 0 KEEP + Cacna1s NO B[a]P_1 chr1 137971691 137971691 C G exonic Cacna1s synonymous SNV NM_001081023:c.C948G:p.T316T exonic Cacna1s synonymous SNV uc007cuf.1:c.C948G:p.T316T exonic ENSMUSG00000026407 synonymous SNV ENSMUST00000161865:c.C207G:p.T69T 1qE4 NA NA chr1 137971691 CACxCTC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 174 0 0 34.463305 0.242857 0.02 0.974834 53 17 1497 432 60 60 0 0 CC 23.435397 78 0 2169 0 KEEP + Cacna1s NO B[a]P_1 chr1 138058296 138058296 C A intronic Kif21b NA NA intronic Kif21b NA NA intronic ENSMUSG00000041642 NA NA 1qE4 NA NA chr1 138058296 CTCxCTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888759 0.888875 0.999869 71 2 0 35.959561 0.365854 0.02 -0.359484 26 15 729 405 60 60 0 0 CC 6.310561 21 0 570 0 KEEP + Kif21b YES B[a]P_1 chr1 138787303 138787303 G T exonic Nr5a2 nonsynonymous SNV NM_001159769:c.C1061A:p.A354E exonic Nr5a2 nonsynonymous SNV uc007cva.2:c.C1061A:p.A354E exonic ENSMUSG00000026398 nonsynonymous SNV ENSMUST00000027649:c.C1244A:p.A415E 1qE4 NA NA chr1 138787303 TGCxCCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 117 0 0 13.430992 0.122807 0.02 1.09791 50 7 1253 193 60 60 0 0 GG 13.827778 46 0 1198 0 KEEP - Nr5a2 YES B[a]P_1 chr1 14221670 14221670 T A intronic Eya1 NA NA intronic Eya1 NA NA intronic ENSMUSG00000025932 NA NA 1qA3 NA NA chr1 14221670 TCAxGGT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 95 0 0 25.732011 0.255814 0.02 -0.385826 32 11 878 311 60 60 0 0 TT 11.127961 37 0 1009 0 KEEP - Eya1 NO B[a]P_1 chr1 152504412 152504412 A T intronic Hmcn1 NA NA ncRNA_intronic AK143102 NA NA intronic ENSMUSG00000066842 NA NA 1qG1 NA NA chr1 152504412 GCAxGAG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 117 3 0 24.231985 0.255814 0.02 -0.377034 32 11 888 296 60 60 0 0 AA 19.244542 64 0 1769 0 KEEP + Hmcn1 NO B[a]P_1 chr1 157571949 157571949 G T exonic Lhx4 synonymous SNV NM_010712:c.C219A:p.G73G exonic Lhx4 synonymous SNV uc007dbn.2:c.C219A:p.G73G exonic ENSMUSG00000026468 synonymous SNV ENSMUST00000027740:c.C219A:p.G73G 1qG3 NA NA chr1 157571949 ACTxCCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78095 0.78106 0.99986 60 2 0 23.627824 0.294118 0.02 -0.298103 24 10 660 278 60 60 0 0 GG 5.688925 19 0 516 0 KEEP - Lhx4 YES B[a]P_1 chr1 158560206 158560206 G T exonic Abl2 nonsynonymous SNV NM_001136104:c.G910T:p.V304F exonic Abl2 nonsynonymous SNV uc007dcl.2:c.G910T:p.V304F exonic ENSMUSG00000026596 nonsynonymous SNV ENSMUST00000027888:c.G910T:p.V304F 1qH1 NA NA chr1 158560206 TACxTTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 135 0 0 21.355805 0.181818 0.02 1.311594 45 10 1101 279 60 60 0 0 GG 18.027137 60 0 1486 0 KEEP + Abl2 YES B[a]P_1 chr1 158599779 158599779 G A intronic Tor3a NA NA intronic Tor3a NA NA intronic ENSMUSG00000060519 NA NA 1qH1 NA NA chr1 158599779 AAAxAGG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 75 1 0 11.822134 0.139535 0.02 -0.377088 37 6 1054 165 60 60 0 0 GG 8.417612 28 0 790 0 KEEP - Tor3a NO B[a]P_1 chr1 158774884 158774884 T A exonic Angptl1 nonsynonymous SNV NM_028333:c.T148A:p.Y50N exonic Angptl1 nonsynonymous SNV uc007ddc.1:c.T148A:p.Y50N exonic ENSMUSG00000033544 nonsynonymous SNV ENSMUST00000027885:c.T148A:p.Y50N 1qH1 NA NA chr1 158774884 TCAxATA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693577 0.693668 0.999869 58 0 0 21.336584 0.3 0.02 -0.26304 21 9 562 250 60 60 0 0 TT 6.315778 21 0 572 0 KEEP + Angptl1 NO B[a]P_1 chr1 164475951 164475951 C G exonic Mettl13 synonymous SNV NM_144877:c.G861C:p.V287V exonic Mettl13 synonymous SNV uc007dgh.1:c.G861C:p.V287V exonic ENSMUSG00000026694 synonymous SNV ENSMUST00000028017:c.G861C:p.V287V 1qH2.1 NA NA chr1 164475951 GTCxACC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.690438 0.693668 0.995343 50 1 0 9.522599 0.166667 0.02 -0.262918 25 5 655 130 60 60 0 0 CC 4.211368 14 0 396 0 KEEP - Mettl13 NO B[a]P_1 chr1 172232897 172232897 T C exonic Gm7694 nonsynonymous SNV NM_001198955:c.A62G:p.H21R exonic Gm7694 nonsynonymous SNV uc011wvs.1:c.A62G:p.H21R exonic ENSMUSG00000079188 nonsynonymous SNV ENSMUST00000111345:c.A62G:p.H21R 1qH3 NA NA chr1 172232897 AGGxGGG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 91 0 0 6.557755 0.166667 0.02 -0.358948 25 5 693 100 60 60 0 0 TT 12.324759 41 0 1098 0 KEEP - Gm7694 NO B[a]P_1 chr1 173147248 173147248 C A exonic Nr1i3 nonsynonymous SNV NM_001243062:c.C620A:p.A207E exonic Nr1i3 nonsynonymous SNV uc011wvy.1:c.C209A:p.A70E exonic ENSMUSG00000005677 nonsynonymous SNV ENSMUST00000005820:c.C620A:p.A207E 1qH3 NA NA chr1 173147248 GAGxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 127 0 0 23.152263 0.148649 0.02 1.046838 63 11 1570 314 60 60 0 0 CC 12.806961 46 1 1114 8 KEEP + Nr1i3 YES B[a]P_1 chr1 173392029 173392029 G T exonic F11r nonsynonymous SNV NM_172647:c.G788T:p.R263L exonic F11r nonsynonymous SNV uc007doo.1:c.G788T:p.R263L exonic ENSMUSG00000038235 nonsynonymous SNV ENSMUST00000043839:c.G788T:p.R263L 1qH3 NA NA chr1 173392029 GCCxTGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 149 0 0 64.212132 0.317647 0.02 1.048378 58 27 1500 744 60 60 0 0 GG 14.130924 47 0 1237 0 KEEP + F11r YES B[a]P_1 chr1 175201123 175201123 G T exonic Olfr418-ps1 synonymous SNV NM_146651:c.G816T:p.L272L exonic Olfr418-ps1 synonymous SNV uc007drf.2:c.G816T:p.L272L exonic ENSMUSG00000049605 synonymous SNV ENSMUST00000059754:c.G816T:p.L272L 1qH3 NA NA chr1 175201123 GCTxATC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999948 0.999948 1 252 2 0 22.494303 0.126316 0.02 0.836185 83 12 2317 324 60 60 0 0 GG 37.297133 124 0 3544 0 KEEP + Olfr418-ps1 YES B[a]P_1 chr1 176082011 176082011 C A exonic Olfr421-ps1 unknown UNKNOWN exonic Olfr421 nonsynonymous SNV uc011wwy.1:c.C363A:p.D121E exonic ENSMUSG00000091950 nonsynonymous SNV ENSMUST00000171570:c.C363A:p.D121E 1qH3 NA NA chr1 176082011 TGAxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 529 0 0 144.288504 0.278761 0.02 4.79943 163 63 4407 1723 60 60 0 0 CC 64.644242 215 0 5943 0 KEEP + Olfr421-ps1 YES B[a]P_1 chr1 176539212 176539212 G T exonic Fmn2 nonsynonymous SNV NM_019445:c.G2617T:p.A873S exonic Fmn2 nonsynonymous SNV uc011wxa.1:c.G46T:p.A16S exonic ENSMUSG00000028354 nonsynonymous SNV ENSMUST00000030039:c.G2617T:p.A873S 1qH3 NA NA chr1 176539212 CCTxCTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 234 0 0 37.919076 0.171429 0.02 2.470749 87 18 2373 502 60 60 0 0 GG 29.904891 103 1 2797 9 KEEP + Fmn2 YES B[a]P_1 chr1 180845230 180845230 G T exonic Kif26b nonsynonymous SNV NM_001161665:c.G2759T:p.C920F exonic Kif26b nonsynonymous SNV uc007dvh.2:c.G2759T:p.C920F exonic ENSMUSG00000026494 nonsynonymous SNV ENSMUST00000160789:c.G1418T:p.C473F 1qH4 NA NA chr1 180845230 ACTxTCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992092 0.992094 0.999998 109 0 0 33.245193 0.238095 0.02 1.142881 48 15 1283 411 60 60 0 0 GG 10.216546 34 0 919 0 KEEP + Kif26b YES B[a]P_1 chr1 184558879 184558879 T G intronic Capn8 NA NA intronic Capn8 NA NA intronic ENSMUSG00000038599 NA NA 1qH5 NA NA chr1 184558879 TTCxTCA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999997 78 0 0 21.93887 0.3125 0.02 -0.280574 22 10 614 258 60 60 0 0 TT 9.624565 32 0 884 0 KEEP + Capn8 NO B[a]P_1 chr1 190831371 190831371 G C intronic Kctd3 NA NA intronic Kctd3 NA NA intronic ENSMUSG00000026608 NA NA 1qH6 NA NA chr1 190831371 CGGxCGT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260049 0.260965 0.99649 36 0 0 6.580727 0.1875 0.02 -0.14021 13 3 344 85 60 60 0 0 GG 4.510541 15 0 415 0 KEEP - Kctd3 NO B[a]P_1 chr1 191485953 191485953 A G exonic Cenpf nonsynonymous SNV NM_001081363:c.T1484C:p.V495A exonic Cenpf nonsynonymous SNV uc007eao.2:c.T1484C:p.V495A exonic ENSMUSG00000026605 nonsynonymous SNV ENSMUST00000027900:c.T1499C:p.V500A 1qH6 NA NA chr1 191485953 CAGxCTT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 162 1 0 21.122002 0.192308 0.02 1.239312 42 10 1148 274 60 60 0 0 AA 23.758204 79 0 2171 0 KEEP - Cenpf NO B[a]P_1 chr1 192882753 192882753 G A exonic Tatdn3 nonsynonymous SNV NM_001163421:c.C202T:p.P68S exonic Tatdn3 nonsynonymous SNV uc007eby.2:c.C202T:p.P68S exonic ENSMUSG00000026632 nonsynonymous SNV ENSMUST00000027945:c.C202T:p.P68S 1qH6 NA NA chr1 192882753 CTGxGTG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 73 0 0 25.147363 0.384615 0.02 -0.227976 16 10 444 279 60 60 0 0 GG 9.926461 33 0 927 0 KEEP - Tatdn3 NO B[a]P_1 chr1 194258615 194258615 C A exonic Kcnh1 nonsynonymous SNV NM_001038607:c.C1845A:p.D615E exonic Kcnh1 nonsynonymous SNV uc007edn.1:c.C1845A:p.D615E exonic ENSMUSG00000058248 nonsynonymous SNV ENSMUST00000078470:c.C1926A:p.D642E 1qH6 NA NA chr1 194258615 AGAxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 124 0 0 41.516986 0.333333 0.02 1.24817 34 17 861 475 60 60 0 0 CC 15.331919 51 0 1331 0 KEEP + Kcnh1 YES B[a]P_1 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 56 0 0 19.462994 0.347826 0.02 -0.210451 15 8 417 221 60 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik YES B[a]P_1 chr1 195157545 195157545 C A exonic Lamb3 nonsynonymous SNV NM_001277928:c.C1532A:p.A511E exonic Lamb3 nonsynonymous SNV uc007eek.1:c.C1532A:p.A511E exonic ENSMUSG00000026639 nonsynonymous SNV ENSMUST00000085541:c.C479A:p.A160E 1qH6 NA NA chr1 195157545 CTGxAGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941701 0.941741 0.999957 87 0 0 11.774131 0.12766 0.02 -0.412148 41 6 1149 167 60 60 0 0 CC 7.818986 26 0 717 0 KEEP + Lamb3 YES B[a]P_1 chr1 196470687 196470687 A T exonic Plxna2 nonsynonymous SNV NM_008882:c.A734T:p.Y245F exonic Plxna2 nonsynonymous SNV uc007een.1:c.A734T:p.Y245F exonic ENSMUSG00000026640 nonsynonymous SNV ENSMUST00000027952:c.A734T:p.Y245F 1qH6 NA NA chr1 196470687 TCTxTGG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 239 0 0 12.777268 0.062992 0.02 2.081463 119 8 3156 219 60 60 0 0 AA 25.241624 84 0 2209 0 KEEP + Plxna2 NO B[a]P_1 chr1 34527192 34527192 A T intronic Ptpn18 NA NA intronic Ptpn18 NA NA intronic ENSMUSG00000026126 NA NA 1qB NA NA chr1 34527192 TTTxGGA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.289823 0.292001 0.99254 26 0 0 8.881477 0.235294 0.02 -0.149078 13 4 368 110 60 60 0 0 AA 2.70719 9 0 252 0 KEEP + Ptpn18 NO B[a]P_1 chr1 34644551 34644551 T A exonic Amer3 nonsynonymous SNV NM_213727:c.T1025A:p.L342Q exonic Fam123c nonsynonymous SNV uc011wjc.1:c.T1025A:p.L342Q exonic ENSMUSG00000045174 nonsynonymous SNV ENSMUST00000052670:c.T1025A:p.L342Q 1qB NA NA chr1 34644551 AACxACC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.954484 0.954491 0.999992 94 0 0 11.916735 0.125 0.02 -0.42949 42 6 1109 169 60 60 0 0 TT 12.025129 40 0 1055 0 KEEP + Amer3 NO B[a]P_1 chr1 36757461 36757461 C G intronic Actr1b NA NA intronic Actr1b NA NA intronic ENSMUSG00000037351 NA NA 1qB NA NA chr1 36757461 TGGxCAA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 102 0 0 15.685443 0.140351 0.02 1.195422 49 8 1371 219 60 60 0 0 CC 11.127894 37 0 1020 0 KEEP - Actr1b NO B[a]P_1 chr1 37120357 37120357 T C intergenic "Tmem131(dist=123985),Cnga3(dist=154766)" NA NA exonic Vwa3b synonymous SNV uc007are.1:c.T873C:p.T291T exonic ENSMUSG00000050122 synonymous SNV ENSMUST00000067178:c.T873C:p.T291T 1qB NA NA chr1 37120357 GACxTGG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 166 1 0 13.607131 0.104478 0.02 1.107689 60 7 1691 200 60 60 0 0 TT 21.05304 70 0 1938 0 KEEP + Tmem131 NO B[a]P_1 chr1 39438111 39438111 C A intronic Tbc1d8 NA NA intronic Tbc1d8 NA NA intronic ENSMUSG00000003134 NA NA 1qB NA NA chr1 39438111 TAGxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996232 0.996233 1 121 1 0 8.707725 0.072464 0.02 1.09023 64 5 1764 141 60 60 0 0 CC 11.128201 37 0 1019 0 KEEP - Tbc1d8 YES B[a]P_1 chr1 43185113 43185113 C G exonic Fhl2 nonsynonymous SNV NM_010212:c.G664C:p.A222P exonic Fhl2 nonsynonymous SNV uc007avk.1:c.G664C:p.A222P exonic ENSMUSG00000008136 nonsynonymous SNV ENSMUST00000008280:c.G664C:p.A222P 1qB NA NA chr1 43185113 CAGxACA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 113 0 0 21.651396 0.181818 0.02 1.21291 45 10 1268 282 60 60 0 0 CC 14.115425 47 0 1286 0 KEEP - Fhl2 NO B[a]P_1 chr1 4336720 4336720 C A exonic Rp1 stopgain SNV NM_011283:c.G4249T:p.E1417X exonic Rp1 stopgain SNV uc007aex.2:c.G4249T:p.E1417X exonic ENSMUSG00000025900 stopgain SNV ENSMUST00000027032:c.G4249T:p.E1417X 1qA1 NA NA chr1 4336720 GTTxCTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 126 0 0 18.279206 0.176471 0.02 1.346309 42 9 1183 243 60 60 0 0 CC 20.084538 67 0 1836 0 KEEP - Rp1 YES B[a]P_1 chr1 53454003 53454003 T C exonic Dnah7a nonsynonymous SNV NM_001252070:c.A12023G:p.K4008R intergenic "Asnsd1(dist=44460),Mir1937b-2(dist=299286)" NA NA intergenic "ENSMUSG00000026095(dist=44407),ENSMUSG00000092657(dist=46112)" NA NA 1qC1.1 "Score=0.931486;Name=No.201,chr1:46837320" NA chr1 53454003 TCCxTGG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999997 80 0 1 27.870014 0.27907 0.02 -0.377081 31 12 879 332 60 60 0 0 TT 9.926312 33 0 923 0 KEEP NA Dnah7a NO B[a]P_1 chr1 54708512 54708512 C A splicing Ankrd44(NM_001081433:exon28:c.2923+1G>T) NA NA splicing Ankrd44(uc011wkz.1:exon28:c.2923+1G>T) NA NA splicing ENSMUSG00000052331(ENSMUST00000044359:exon28:c.2977+1G>T) NA NA 1qC1.1 NA NA chr1 54708512 TTAxCAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 154 2 0 22.72235 0.169231 0.02 1.125316 54 11 1457 303 60 60 0 0 CC 19.247806 64 0 1747 0 KEEP - Ankrd44 YES B[a]P_1 chr1 55135398 55135398 T C exonic Hspd1 nonsynonymous SNV NM_010477:c.A1544G:p.E515G exonic Hspd1 nonsynonymous SNV uc007bab.2:c.A1544G:p.E515G exonic ENSMUSG00000025980 nonsynonymous SNV ENSMUST00000027123:c.A1544G:p.E515G 1qC1.2 NA NA chr1 55135398 TTTxCCA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 104 6 0 12.057832 0.122449 0.02 -0.429675 43 6 1188 171 60 37 0 0 TT 12.607178 42 0 1153 0 KEEP - Hspd1 NO B[a]P_1 chr1 58013138 58013138 A C UTR3 Kctd18 NA NA UTR3 Kctd18 NA NA UTR3 ENSMUSG00000054770 NA NA 1qC1.3 NA NA chr1 58013138 GGAxGCT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 542 0 0 35.667812 0.090164 0.02 4.250503 222 22 6104 572 60 60 0 0 AA 68.819704 229 0 6282 0 KEEP - Kctd18 NO B[a]P_1 chr1 63592095 63592095 G T exonic Adam23 nonsynonymous SNV NM_001177600:c.G1087T:p.V363L exonic Adam23 nonsynonymous SNV uc007bge.1:c.G1087T:p.V363L exonic ENSMUSG00000025964 nonsynonymous SNV ENSMUST00000093930:c.G532T:p.V178L 1qC2 NA NA chr1 63592095 CCCxTGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 296 1 0 83.821859 0.255319 0.02 2.253853 105 36 2478 1014 60 60 0 0 GG 33.339242 111 0 2692 0 KEEP + Adam23 YES B[a]P_1 chr1 63723780 63723780 C T exonic Dytn synonymous SNV NM_001081658:c.G207A:p.L69L exonic Dytn synonymous SNV uc007bgi.1:c.G207A:p.L69L exonic ENSMUSG00000069085 synonymous SNV ENSMUST00000090313:c.G207A:p.L69L 1qC2 NA NA chr1 63723780 AAAxAGC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 44 0 0 7.896722 0.173913 0.02 -0.201663 19 4 517 106 60 60 0 0 CC 5.112859 17 0 465 0 KEEP - Dytn NO B[a]P_1 chr1 64968420 64968420 T G exonic Plekhm3 nonsynonymous SNV NM_001039493:c.A1250C:p.N417T exonic Plekhm3 nonsynonymous SNV uc007bhb.1:c.A425C:p.N142T exonic ENSMUSG00000051344 nonsynonymous SNV ENSMUST00000097713:c.A1250C:p.N417T 1qC2 NA NA chr1 64968420 AGGxTGT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781026 0.78106 0.999957 67 2 0 23.930776 0.294118 0.02 -0.297958 24 10 635 281 60 60 0 0 TT 7.819252 26 0 704 0 KEEP - Plekhm3 NO B[a]P_1 chr1 71149429 71149429 T A UTR5 Bard1 NA NA UTR5 Bard1 NA NA UTR5 ENSMUSG00000026196 NA NA 1qC3 NA NA chr1 71149429 CGCxGGT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818376 0.818465 0.999892 65 0 0 18.037926 0.222222 0.02 -0.315696 28 8 793 225 60 60 0 0 TT 6.914516 23 0 616 0 KEEP - Bard1 NO B[a]P_1 chr1 74829236 74829236 A C exonic Wnt6 nonsynonymous SNV NM_009526:c.A401C:p.Q134P exonic Wnt6 nonsynonymous SNV uc007bne.1:c.A401C:p.Q134P exonic ENSMUSG00000033227 nonsynonymous SNV ENSMUST00000006716:c.A401C:p.Q134P 1qC3 NA NA chr1 74829236 GTCxGGC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987941 0.987943 0.999998 98 0 0 11.969709 0.116667 0.02 1.169107 53 7 1491 180 60 60 0 0 AA 9.921565 33 0 880 0 KEEP + Wnt6 NO B[a]P_1 chr1 78525781 78525781 G T exonic Mogat1 nonsynonymous SNV NM_026713:c.G807T:p.Q269H exonic Mogat1 nonsynonymous SNV uc007bqk.1:c.G807T:p.Q269H exonic ENSMUSG00000012187 nonsynonymous SNV ENSMUST00000012331:c.G807T:p.Q269H 1qC4 NA NA chr1 78525781 CCAxCAC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 122 2 0 15.956085 0.135593 0.02 1.080011 51 8 1406 223 60 60 0 0 GG 14.735919 49 0 1342 0 KEEP + Mogat1 YES B[a]P_1 chr1 82653393 82653393 G C intronic Col4a3 NA NA intronic Col4a3 NA NA intronic ENSMUSG00000079465 NA NA 1qC5 NA NA chr1 82653393 TGAxACC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.99986 62 0 0 10.199588 0.172414 0.02 -0.254313 24 5 686 136 60 60 0 0 GG 5.715281 19 0 543 0 KEEP + Col4a3 NO B[a]P_1 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 548 0 0 28.84463 0.055385 0.02 7.449054 307 18 8160 504 70 60 1 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO B[a]P_1 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 410 0 0 41.425711 0.112821 0.02 3.465582 173 22 4877 607 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 NO B[a]P_1 chr1 90112835 90112835 C T exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1207T:p.R403C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1198T:p.R400C exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1201T:p.R401C 1qD NA NA chr1 90112835 AAGxGCA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 190 0 0 18.127707 0.09901 0.02 2.505094 91 10 2412 275 60 60 0 0 CC 18.044386 60 0 1644 0 KEEP + Ugt1a1 NO B[a]P_1 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 223 0 0 32.315856 0.147826 0.02 2.382622 98 17 2525 451 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 NO B[a]P_1 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 268 1 0 23.133598 0.089172 0.02 3.513212 143 14 4062 369 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a YES B[a]P_1 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 391 1 0 20.794562 0.068966 0.02 5.082332 162 12 4366 340 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO B[a]P_1 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 465 1 0 20.497455 0.057613 0.02 3.818615 229 14 6275 370 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a NO B[a]P_1 chr1 90140564 90140564 G A exonic Mroh2a nonsynonymous SNV NM_001281466:c.G2339A:p.C780Y exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G2348A:p.C783Y exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G2339A:p.C780Y 1qD NA NA chr1 90140564 GCTxTGT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 922 4 0 22.544721 0.035857 0.02 10.590326 484 18 13368 475 60 60 0 0 GG 86.555762 288 0 8080 0 KEEP + Mroh2a NO B[a]P_1 chr1 90142592 90142592 C T exonic Mroh2a synonymous SNV NM_001281466:c.C2586T:p.H862H exonic Heatr7b1 synonymous SNV uc011wov.1:c.C2595T:p.H865H exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.C2586T:p.H862H 1qD NA NA chr1 90142592 CCAxTTG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 522 2 0 30.365594 0.067857 0.02 5.452861 261 19 7192 514 60 60 0 0 CC 47.181285 157 0 4345 0 KEEP + Mroh2a NO B[a]P_1 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 233 0 0 14.210568 0.075 0.02 2.312653 111 9 3030 237 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO B[a]P_1 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999998 109 0 0 19.900104 0.172414 0.02 1.186637 48 10 1340 267 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a NO B[a]P_1 chr1 90155318 90155318 T A intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90155318 GGTxGGG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 308 1 0 11.596146 0.056911 0.02 5.072831 116 7 3192 199 60 60 0 0 TT 24.650705 82 0 2193 0 KEEP + Mroh2a NO B[a]P_1 chr1 90155329 90155329 C G intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90155329 TGAxCCT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 251 1 0 26.68321 0.117647 0.02 3.445019 105 14 2870 387 60 60 0 0 CC 19.853035 66 0 1857 0 KEEP + Mroh2a NO B[a]P_1 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 259 0 0 33.832351 0.104046 0.02 3.640826 155 18 4195 503 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO B[a]P_1 chr1 90161760 90161760 G A exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.C1772T:p.P591L exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc011wow.1:c.C1376T:p.P459L exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000100097:c.C473T:p.P158L 1qD NA NA chr1 90161760 CAGxGCC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 148 0 0 12.274189 0.085366 0.02 0.907368 75 7 2082 193 60 60 0 0 GG 11.731581 39 0 1104 0 KEEP - A730008H23Rik NO B[a]P_1 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 446 2 0 21.041144 0.063725 0.02 4.58372 191 13 5002 358 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP - A730008H23Rik NO B[a]P_1 chr1 92694721 92694721 G T exonic Col6a3 nonsynonymous SNV NM_001243009:c.C4141A:p.L1381M exonic Col6a3 nonsynonymous SNV uc007bzk.1:c.C2128A:p.L710M exonic ENSMUSG00000048126 nonsynonymous SNV ENSMUST00000165604:c.C901A:p.L301M 1qD NA NA chr1 92694721 TCAxCCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 99 0 0 9.579864 0.116279 0.02 -0.377071 38 5 1069 139 60 60 0 0 GG 12.579132 42 0 1143 0 KEEP - Col6a3 YES B[a]P_1 chr1 92981582 92981582 G T exonic Lrrfip1 nonsynonymous SNV NM_008515:c.G375T:p.R125S exonic Lrrfip1 nonsynonymous SNV uc007bzp.2:c.G405T:p.R135S exonic ENSMUSG00000026305 nonsynonymous SNV ENSMUST00000068167:c.G375T:p.R125S 1qD NA NA chr1 92981582 CAGxGTT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 131 1 0 36.325188 0.266667 0.02 1.160317 44 16 1241 438 60 60 0 0 GG 15.912015 53 0 1427 0 KEEP + Lrrfip1 YES B[a]P_1 chr1 93316122 93316122 T A intronic Per2 NA NA intronic Per2 NA NA intronic ENSMUSG00000055866 NA NA 1qD NA NA chr1 93316122 GTAxAGG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 149 0 0 23.169712 0.177419 0.02 1.151659 51 11 1342 305 60 60 0 0 TT 19.793292 66 0 1710 0 KEEP - Per2 NO B[a]P_1 chr1 94366641 94366641 G A exonic Ndufa10 nonsynonymous SNV NM_024197:c.C259T:p.P87S exonic Ndufa10 nonsynonymous SNV uc007cbh.1:c.C259T:p.P87S exonic ENSMUSG00000026260 nonsynonymous SNV ENSMUST00000027478:c.C259T:p.P87S 1qD NA NA chr1 94366641 CTGxGTA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138942 0.139832 0.993634 26 0 0 6.501361 0.25 0.02 -0.105225 9 3 256 80 60 60 0 0 GG 3.606312 12 0 314 0 KEEP - Ndufa10 NO B[a]P_1 chr1 94951567 94951567 G T intronic Kif1a NA NA intronic Kif1a NA NA intronic ENSMUSG00000014602 NA NA 1qD NA NA chr1 94951567 CATxAAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781026 0.78106 0.999957 68 1 0 22.226088 0.294118 0.02 -0.298138 24 10 681 264 60 60 0 0 GG 7.821417 26 0 742 0 KEEP - Kif1a YES B[a]P_1 chr1 94951569 94951569 A G intronic Kif1a NA NA intronic Kif1a NA NA intronic ENSMUSG00000014602 NA NA 1qD NA NA chr1 94951569 TGAxAGA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78105 0.78106 0.999988 69 1 0 23.426813 0.294118 0.02 -0.298144 24 10 670 276 60 60 0 0 AA 8.12058 27 0 745 0 KEEP - Kif1a NO B[a]P_1 chr1 95294223 95294223 C A exonic Ano7 nonsynonymous SNV NM_001271884:c.C1676A:p.P559Q exonic Ano7 nonsynonymous SNV uc007cdw.1:c.C1676A:p.P559Q exonic ENSMUSG00000034107 nonsynonymous SNV ENSMUST00000058682:c.C1676A:p.P559Q 1qD NA NA chr1 95294223 ACCxGGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999998 97 0 0 25.465579 0.23913 0.02 -0.403164 35 11 880 312 60 60 0 0 CC 10.214475 34 0 839 0 KEEP + Ano7 YES B[a]P_1 chr2 103584548 103584548 C G exonic Nat10 nonsynonymous SNV NM_153126:c.G809C:p.G270A exonic Nat10 nonsynonymous SNV uc008liy.1:c.G809C:p.G270A exonic ENSMUSG00000027185 nonsynonymous SNV ENSMUST00000028608:c.G809C:p.G270A 2qE2 NA NA chr2 103584548 ATCxCCT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 102 0 0 20.408879 0.208333 0.02 -0.420892 38 10 1072 263 60 60 0 0 CC 12.888031 43 0 1180 0 KEEP - Nat10 NO B[a]P_1 chr2 103995218 103995218 G T intronic D430041D05Rik NA NA intronic D430041D05Rik NA NA intronic ENSMUSG00000068373 NA NA 2qE2 NA NA chr2 103995218 CCTxGGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 263 0 0 66.751047 0.217391 0.02 2.180755 108 30 3027 838 60 60 0 0 GG 26.457972 88 0 2473 0 KEEP - D430041D05Rik YES B[a]P_1 chr2 104832204 104832204 A G exonic Ccdc73 synonymous SNV NM_177600:c.A2340G:p.Q780Q exonic Ccdc73 synonymous SNV uc008lkk.2:c.A2340G:p.Q780Q exonic ENSMUSG00000045106 synonymous SNV ENSMUST00000094764:c.A1635G:p.Q545Q 2qE2 NA NA chr2 104832204 ACAxGCC A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851892 0.851984 0.999892 63 0 0 12.669305 0.157895 0.02 -0.333208 32 6 884 170 60 60 0 0 AA 6.917499 23 0 636 0 KEEP + Ccdc73 NO B[a]P_1 chr2 106225628 106225628 C A intergenic "Dnajc24(dist=381922),Gm14015(dist=78352)" NA NA exonic Dcdc5 synonymous SNV uc008llk.1:c.C130A:p.R44R exonic ENSMUSG00000074981 synonymous SNV ENSMUST00000037284:c.C130A:p.R44R 2qE3 NA NA chr2 106225628 GAAxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 94 0 0 27.838751 0.255319 0.02 -0.420507 35 12 834 337 60 60 0 0 CC 8.713043 29 0 719 0 KEEP + Dnajc24 YES B[a]P_1 chr2 110993044 110993044 C A intergenic "Ano3(dist=202643),4930430A15Rik(dist=40367)" NA NA intergenic "Ano3(dist=202643),4930430A15Rik(dist=40367)" NA NA exonic ENSMUSG00000079169 unknown UNKNOWN 2qE3 NA NA chr2 110993044 TACxTTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 140 0 0 17.815783 0.140625 0.02 1.036104 55 9 1562 248 60 60 0 0 CC 13.536207 45 0 1280 0 KEEP NA Ano3 YES B[a]P_1 chr2 111175544 111175544 T C exonic Olfr1282 synonymous SNV NM_146907:c.A690G:p.K230K exonic Olfr1282 synonymous SNV uc008lnj.1:c.A690G:p.K230K exonic ENSMUSG00000074964 synonymous SNV ENSMUST00000099618:c.A690G:p.K230K 2qE3 "Score=0.939414;Name=No.75320,chr2:111245615" NA chr2 111175544 ATCxTTA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 530 4 35 20.943445 0.055556 0.02 4.925569 221 13 6173 365 60 60 0 0 TT 66.472378 221 0 6157 0 KEEP - Olfr1282 NO B[a]P_1 chr2 111208781 111208781 T C upstream Olfr1283 NA NA upstream Olfr1283 NA NA UTR5 ENSMUSG00000064266 NA NA 2qE3 "Score=0.946331;Name=No.75321,chr2:111286025" NA chr2 111208781 CACxTTG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 203 0 0 62.946781 0.296703 0.02 0.995773 64 27 1805 741 60 60 0 0 TT 22.860723 76 0 2130 0 KEEP NA Olfr1283 NO B[a]P_1 chr2 111323824 111323824 C A exonic Olfr1289 nonsynonymous SNV NM_146404:c.C236A:p.S79Y exonic Olfr1289 nonsynonymous SNV uc008lnp.1:c.C236A:p.S79Y exonic ENSMUSG00000061195 nonsynonymous SNV ENSMUST00000102551:c.C236A:p.S79Y 2qE3 NA NA chr2 111323824 TCTxTGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999997 92 0 0 19.641495 0.185185 0.02 1.026517 44 10 1243 261 60 60 0 0 CC 9.616901 32 0 898 0 KEEP + Olfr1289 YES B[a]P_1 chr2 111620479 111620479 A C exonic Olfr1302 nonsynonymous SNV NM_146889:c.A10C:p.M4L exonic Olfr1302 nonsynonymous SNV uc008lnz.1:c.A10C:p.M4L exonic ENSMUSG00000044560 nonsynonymous SNV ENSMUST00000054004:c.A10C:p.M4L 2qE3 NA NA chr2 111620479 AAAxTGG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 134 0 0 16.889271 0.136364 0.02 1.018646 57 9 1557 240 60 60 0 0 AA 14.108592 47 0 1268 0 KEEP + Olfr1302 NO B[a]P_1 chr2 111654555 111654555 T C exonic Olfr1303 synonymous SNV NM_146402:c.A327G:p.G109G exonic Olfr1303 synonymous SNV uc008loa.1:c.A327G:p.G109G exonic ENSMUSG00000074956 synonymous SNV ENSMUST00000099609:c.A327G:p.G109G 2qE3 NA NA chr2 111654555 CACxCCA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 342 2 2 10.036557 0.04023 0.02 3.560237 167 7 4692 194 60 60 0 0 TT 38.499303 128 0 3560 0 KEEP - Olfr1303 NO B[a]P_1 chr2 11596051 11596051 G T exonic Il2ra nonsynonymous SNV NM_008367:c.G194T:p.R65L exonic Il2ra nonsynonymous SNV uc008iiq.2:c.G194T:p.R65L exonic ENSMUSG00000026770 nonsynonymous SNV ENSMUST00000028111:c.G194T:p.R65L 2qA1 NA NA chr2 11596051 TGCxTTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 173 0 0 28.486437 0.150538 0.02 0.880266 79 14 1965 389 60 60 0 0 GG 18.621898 62 0 1551 0 KEEP + Il2ra YES B[a]P_1 chr2 118465385 118465385 T G exonic Bub1b nonsynonymous SNV NM_009773:c.T2837G:p.I946R exonic Bub1b nonsynonymous SNV uc008lse.2:c.T2837G:p.I946R exonic ENSMUSG00000040084 nonsynonymous SNV ENSMUST00000166245:c.T1127G:p.I376R 2qE5 NA NA chr2 118465385 GTAxAGC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 171 1 0 12.595478 0.094595 0.02 1.144968 67 7 1765 193 60 60 0 0 TT 20.723141 69 0 1823 0 KEEP + Bub1b NO B[a]P_1 chr2 118520004 118520004 C A intronic Pak6 NA NA intronic Pak6 NA NA intronic ENSMUSG00000074923 NA NA 2qE5 NA NA chr2 118520004 TCCxATG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992082 0.992094 0.999988 96 0 0 24.41049 0.22 0.02 1.151525 39 11 1108 306 70 60 0 0 CC 8.118751 27 0 746 0 KEEP + Pak6 YES B[a]P_1 chr2 118752899 118752899 G C exonic Chst14 nonsynonymous SNV NM_028117:c.G512C:p.G171A exonic Chst14 nonsynonymous SNV uc012cbn.1:c.G512C:p.G171A exonic ENSMUSG00000074916 nonsynonymous SNV ENSMUST00000099546:c.G512C:p.G171A 2qE5 NA NA chr2 118752899 CTGxCAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 173 0 0 54.051436 0.229358 0.02 2.42632 84 25 2340 676 60 60 0 0 GG 14.121309 47 0 1268 0 KEEP + Chst14 NO B[a]P_1 chr2 118960259 118960259 A C intronic Rad51 NA NA intronic Rad51 NA NA intronic ENSMUSG00000027323 NA NA 2qE5 NA NA chr2 118960259 GCAxAAT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.22747 0.229173 0.99257 31 0 0 6.772906 0.2 0.02 -0.131533 12 3 330 86 60 60 0 0 AA 2.406377 8 0 224 0 KEEP + Rad51 NO B[a]P_1 chr2 119550564 119550564 G T exonic Rtf1 nonsynonymous SNV NM_030112:c.G1222T:p.A408S exonic Rtf1 nonsynonymous SNV uc008lue.2:c.G1222T:p.A408S exonic ENSMUSG00000027304 nonsynonymous SNV ENSMUST00000028767:c.G1222T:p.A408S 2qE5 NA NA chr2 119550564 GTGxCTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 78 0 0 12.851249 0.193548 0.02 -0.271828 25 6 695 166 60 60 0 0 GG 9.323794 31 0 861 0 KEEP + Rtf1 YES B[a]P_1 chr2 119894763 119894763 G T intergenic "Pla2g4b(dist=25995),Ehd4(dist=20460)" NA NA intergenic "Pla2g4b(dist=25995),Ehd4(dist=20460)" NA NA intronic ENSMUSG00000074899 NA NA 2qE5 NA NA chr2 119894763 CTGxTAC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.691234 0.693668 0.99649 46 0 0 7.726202 0.142857 0.02 -0.26302 24 4 645 108 60 60 0 0 GG 4.502085 15 0 397 0 KEEP NA Pla2g4b YES B[a]P_1 chr2 120919465 120919465 C A exonic Tgm7 unknown UNKNOWN exonic Tgm7 stopgain SNV uc012ccl.1:c.G1981T:p.G661X exonic ENSMUSG00000079103 stopgain SNV ENSMUST00000110675:c.G1711T:p.G571X 2qE5 NA NA chr2 120919465 GTCxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999997 89 1 0 14.788566 0.145833 0.02 -0.420575 41 7 1005 201 60 60 0 0 CC 9.613799 32 0 803 0 KEEP - Tgm7 YES B[a]P_1 chr2 121132829 121132829 G T exonic Map1a stopgain SNV NM_001173506:c.G7675T:p.E2559X exonic Mtap1a stopgain SNV uc008lyj.2:c.G7675T:p.E2559X exonic ENSMUSG00000027254 stopgain SNV ENSMUST00000110639:c.G7675T:p.E2559X 2qE5 NA NA chr2 121132829 CCCxAGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.690438 0.693668 0.995343 44 0 0 19.07929 0.266667 0.02 -0.262151 22 8 452 228 60 60 0 0 GG 4.20268 14 0 317 0 KEEP + Map1a YES B[a]P_1 chr2 121780280 121780280 C A exonic Mageb3 nonsynonymous SNV NM_008545:c.G676T:p.G226W exonic Mageb3 nonsynonymous SNV uc008lzv.1:c.G676T:p.G226W exonic ENSMUSG00000074881 nonsynonymous SNV ENSMUST00000104936:c.G676T:p.G226W 2qE5 "Score=0.981218;Name=No.80934,chrX:88577033" NA chr2 121780280 TCCxAGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 355 2 46 96.518563 0.270968 0.02 3.700186 113 42 3177 1158 57 57 0 0 CC 41.204268 137 0 3868 0 KEEP - Mageb3 YES B[a]P_1 chr2 121955266 121955266 T A UTR5 Patl2 NA NA UTR5 Patl2 NA NA UTR5 ENSMUSG00000027233 NA NA 2qE5 NA NA chr2 121955266 TGGxGGG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 105 0 0 14.825587 0.152174 0.02 -0.403373 39 7 1081 200 60 60 0 0 TT 14.736115 49 0 1324 0 KEEP - Patl2 NO B[a]P_1 chr2 122108979 122108979 C G intronic Duox2 NA NA UTR3 Duox2 NA NA UTR3 ENSMUSG00000068452 NA NA 2qE5 NA NA chr2 122108979 CTCxGCC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970779 0.97082 0.999957 84 0 0 12.273942 0.132075 0.02 1.230858 46 7 1145 179 60 60 0 0 CC 7.808731 26 0 622 0 KEEP - Duox2 NO B[a]P_1 chr2 122110650 122110650 G T exonic Duox2 synonymous SNV NM_177610:c.C3156A:p.S1052S exonic Duox2 synonymous SNV uc008mal.1:c.C240A:p.S80S exonic ENSMUSG00000068452 synonymous SNV ENSMUST00000166286:c.C240A:p.S80S 2qE5 NA NA chr2 122110650 CCGxGAC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 329 0 0 123.654669 0.255814 0.02 4.98606 160 55 4511 1505 60 60 1 0 GG 22.54979 75 0 2056 0 KEEP - Duox2 YES B[a]P_1 chr2 125583230 125583230 C G exonic Secisbp2l nonsynonymous SNV NM_177608:c.G1354C:p.A452P exonic Secisbp2l nonsynonymous SNV uc008mcz.1:c.G1354C:p.A452P exonic ENSMUSG00000035093 nonsynonymous SNV ENSMUST00000053699:c.G1354C:p.A452P 2qF1 NA NA chr2 125583230 CAGxTAA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 155 0 0 40.737934 0.215909 0.02 0.923734 69 19 1944 516 60 60 0 0 CC 16.844836 56 0 1579 0 KEEP - Secisbp2l NO B[a]P_1 chr2 126966942 126966942 T C exonic Itpripl1 nonsynonymous SNV NM_001163527:c.A995G:p.K332R exonic Itpripl1 nonsynonymous SNV uc008mev.2:c.A995G:p.K332R exonic ENSMUSG00000074825 nonsynonymous SNV ENSMUST00000110386:c.A995G:p.K332R 2qF1 NA NA chr2 126966942 AGCxTAA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 262 1 0 15.250993 0.057325 0.02 3.807413 148 9 4142 259 60 60 0 0 TT 19.826137 66 0 1825 0 KEEP - Itpripl1 NO B[a]P_1 chr2 128863897 128863897 G A intergenic "Zc3h6(dist=19598),Ttl(dist=27786)" NA NA intergenic "Zc3h6(dist=19598),Ttl(dist=27786)" NA NA exonic ENSMUSG00000079051 nonsynonymous SNV ENSMUST00000145798:c.C1844T:p.P615L 2qF1 NA NA chr2 128863897 AGTxGGC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926528 0.92664 0.999879 75 0 0 11.298294 0.133333 0.02 -0.394366 39 6 1088 161 60 60 0 0 GG 6.610625 22 0 612 0 KEEP NA Zc3h6 NO B[a]P_1 chr2 128863899 128863899 G C intergenic "Zc3h6(dist=19600),Ttl(dist=27784)" NA NA intergenic "Zc3h6(dist=19600),Ttl(dist=27784)" NA NA exonic ENSMUSG00000079051 nonsynonymous SNV ENSMUST00000145798:c.C1842G:p.S614R 2qF1 NA NA chr2 128863899 TGGxCTG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926528 0.92664 0.999879 73 0 0 11.758856 0.136364 0.02 -0.39452 38 6 1042 165 60 60 0 0 GG 6.596546 22 0 583 0 KEEP NA Zc3h6 NO B[a]P_1 chr2 130187642 130187642 C T intronic Ebf4 NA NA ncRNA_intronic O/E-4S NA NA intronic ENSMUSG00000053552 NA NA 2qF1 NA NA chr2 130187642 CCTxTGC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 284 2 0 20.348471 0.095238 0.02 2.090213 114 12 3060 318 60 60 0 1 CC 36.675201 122 0 3364 0 KEEP + Ebf4 NO B[a]P_1 chr2 130489081 130489081 T A intronic Ddrgk1 NA NA intronic Ddrgk1 NA NA intronic ENSMUSG00000068290 NA NA 2qF1 NA NA chr2 130489081 TCTxACC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989541 0.989542 0.999999 116 0 0 9.962382 0.098361 0.02 1.06248 55 6 1516 156 60 60 0 0 TT 10.46399 35 0 931 0 KEEP - Ddrgk1 NO B[a]P_1 chr2 130896999 130896999 C T exonic Siglec1 nonsynonymous SNV NM_011426:c.G4732A:p.A1578T exonic Siglec1 nonsynonymous SNV uc008mko.1:c.G4732A:p.A1578T exonic ENSMUSG00000027322 nonsynonymous SNV ENSMUST00000028794:c.G4732A:p.A1578T 2qF1 NA NA chr2 130896999 AGGxTAC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979525 0.979526 0.999999 102 0 0 13.385952 0.125 0.02 1.20419 49 7 1365 192 60 60 0 0 CC 10.802367 36 0 993 0 KEEP - Siglec1 NO B[a]P_1 chr2 131003863 131003863 T C exonic Cenpb nonsynonymous SNV NM_007682:c.A1750G:p.K584E exonic Cenpb nonsynonymous SNV uc008mkx.1:c.A1750G:p.K584E exonic ENSMUSG00000068267 nonsynonymous SNV ENSMUST00000089510:c.A1750G:p.K584E 2qF1 NA NA chr2 131003863 TCTxCCT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 157 0 0 62.735355 0.276596 0.02 0.969231 68 26 1895 744 60 60 0 0 TT 13.835226 46 0 1268 0 KEEP - Cenpb NO B[a]P_1 chr2 136376271 136376271 G T exonic Ankef1 nonsynonymous SNV NM_175667:c.G1643T:p.G548V exonic Ankrd5 nonsynonymous SNV uc008mol.1:c.G1109T:p.G370V exonic ENSMUSG00000074771 nonsynonymous SNV ENSMUST00000028726:c.G1643T:p.G548V 2qF3 NA NA chr2 136376271 AGGxGTA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 108 0 0 19.263575 0.18 0.02 -0.438434 41 9 1148 252 60 60 0 0 GG 12.934118 43 0 1203 0 KEEP + Ankef1 YES B[a]P_1 chr2 140007316 140007316 G T exonic Ndufaf5 nonsynonymous SNV NM_027093:c.G334T:p.V112L exonic 2310003L22Rik nonsynonymous SNV uc008mpo.2:c.G334T:p.V112L exonic ENSMUSG00000027384 nonsynonymous SNV ENSMUST00000044825:c.G334T:p.V112L 2qF3 NA NA chr2 140007316 ACTxTGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 80 0 0 15.55101 0.225806 0.02 -0.271825 24 7 659 194 60 60 0 0 GG 11.129798 37 0 1046 0 KEEP + Ndufaf5 YES B[a]P_1 chr2 147870531 147870531 G T exonic Foxa2 synonymous SNV NM_010446:c.C99A:p.A33A exonic Foxa2 synonymous SNV uc008mta.1:c.C99A:p.A33A exonic ENSMUSG00000037025 synonymous SNV ENSMUST00000109964:c.C117A:p.A39A 2qG3 NA NA chr2 147870531 GCCxGCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 282 0 0 62.77488 0.21875 0.02 2.358091 100 28 2604 786 60 60 0 0 GG 32.15644 107 0 2766 0 KEEP - Foxa2 YES B[a]P_1 chr2 147871544 147871544 G C intronic Foxa2 NA NA intronic Foxa2 NA NA intronic ENSMUSG00000037025 NA NA 2qG3 NA NA chr2 147871544 CCTxGCC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 255 2 0 54.263428 0.2 0.02 2.206831 108 27 3026 707 60 60 0 0 GG 25.557283 85 0 2376 0 KEEP - Foxa2 NO B[a]P_1 chr2 148232314 148232314 A C exonic Thbd nonsynonymous SNV NM_009378:c.T1369G:p.F457V exonic Thbd nonsynonymous SNV uc008mtd.2:c.T1369G:p.F457V exonic ENSMUSG00000074743 nonsynonymous SNV ENSMUST00000099270:c.T1369G:p.F457V 2qG3 NA NA chr2 148232314 GGAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 141 0 0 8.538764 0.072289 0.02 0.772308 77 6 2126 150 60 60 0 0 AA 13.533785 45 0 1235 0 KEEP - Thbd NO B[a]P_1 chr2 148269036 148269036 T A exonic Cd93 nonsynonymous SNV NM_010740:c.A125T:p.K42M exonic Cd93 nonsynonymous SNV uc008mte.1:c.A125T:p.K42M exonic ENSMUSG00000027435 nonsynonymous SNV ENSMUST00000099269:c.A125T:p.K42M 2qG3 NA NA chr2 148269036 AGCxTGC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999676 0.999678 0.999999 133 0 0 7.725206 0.05814 0.02 0.844784 81 5 2209 136 60 60 0 0 TT 10.527556 35 0 975 0 KEEP - Cd93 NO B[a]P_1 chr2 148607979 148607979 T G exonic 8030411F24Rik nonsynonymous SNV NM_030135:c.T136G:p.F46V exonic "8030411F24Rik,Cst14" nonsynonymous SNV uc008mtm.1:c.T136G:p.F46V exonic ENSMUSG00000027444 nonsynonymous SNV ENSMUST00000028933:c.T136G:p.F46V 2qG3 NA NA chr2 148607979 CAGxTCA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800211 0.800245 0.999957 66 0 0 14.637644 0.2 0.02 -0.306883 28 7 762 189 60 60 0 0 TT 7.819637 26 0 710 0 KEEP + 8030411F24Rik NO B[a]P_1 chr2 150401527 150401527 C A exonic Cst7 nonsynonymous SNV NM_009977:c.C155A:p.A52D exonic Cst7 nonsynonymous SNV uc008muc.2:c.C155A:p.A52D exonic ENSMUSG00000068129 nonsynonymous SNV ENSMUST00000089200:c.C155A:p.A52D 2qG3 NA NA chr2 150401527 CCGxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668494 0.668523 0.999957 67 0 0 8.05965 0.137931 0.02 -0.254304 25 4 699 112 60 60 0 0 CC 7.817224 26 0 716 0 KEEP + Cst7 YES B[a]P_1 chr2 151561319 151561319 C G exonic Psmf1 nonsynonymous SNV NM_212446:c.G173C:p.W58S exonic Psmf1 nonsynonymous SNV uc008nek.1:c.G173C:p.W58S exonic ENSMUSG00000032869 nonsynonymous SNV ENSMUST00000042452:c.G173C:p.W58S 2qG3 NA NA chr2 151561319 TTCxACT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976863 0.976865 0.999998 95 0 0 31.83285 0.290909 0.02 1.21327 39 16 1078 386 60 60 0 0 CC 10.226701 34 0 956 0 KEEP - Psmf1 NO B[a]P_1 chr2 153061742 153061742 C A exonic Plagl2 nonsynonymous SNV NM_018807:c.G54T:p.E18D exonic Plagl2 nonsynonymous SNV uc008nhj.1:c.G54T:p.E18D exonic ENSMUSG00000051413 nonsynonymous SNV ENSMUST00000056924:c.G54T:p.E18D 2qH1 NA NA chr2 153061742 CTCxTCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 113 0 0 42.487673 0.327273 0.02 1.213005 37 18 1034 490 60 60 0 0 CC 12.935403 43 0 1229 0 KEEP - Plagl2 YES B[a]P_1 chr2 153732542 153732542 C T exonic Bpifb6 nonsynonymous SNV NM_199303:c.C721T:p.P241S exonic Bpil3 nonsynonymous SNV uc008nio.2:c.C721T:p.P241S exonic ENSMUSG00000068009 nonsynonymous SNV ENSMUST00000135501:c.C721T:p.P241S 2qH1 NA NA chr2 153732542 CTCxCGG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.548856 0.552887 0.992708 38 0 0 25.463259 0.4 0.02 -0.219203 15 10 416 280 60 60 0 0 CC 3.008192 10 0 284 0 KEEP + Bpifb6 NO B[a]P_1 chr2 154346906 154346906 A G exonic Cbfa2t2 synonymous SNV NM_009823:c.A966G:p.Q322Q exonic Cbfa2t2 synonymous SNV uc008njf.2:c.A966G:p.Q322Q exonic ENSMUSG00000038533 synonymous SNV ENSMUST00000045270:c.A966G:p.Q322Q 2qH1 NA NA chr2 154346906 TCAxGAT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 76 0 0 8.196255 0.133333 0.02 -0.263075 26 4 726 114 60 60 0 0 AA 8.713945 29 0 800 0 KEEP + Cbfa2t2 NO B[a]P_1 chr2 155240672 155240672 A C exonic Ncoa6 nonsynonymous SNV NM_001242558:c.T2686G:p.L896V exonic Ncoa6 nonsynonymous SNV uc008nkm.1:c.T2686G:p.L896V exonic ENSMUSG00000038369 nonsynonymous SNV ENSMUST00000043126:c.T2686G:p.L896V 2qH1 NA NA chr2 155240672 GTAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 143 0 0 8.47865 0.078947 0.02 0.736996 70 6 1930 147 60 60 0 0 AA 16.543743 55 0 1540 0 KEEP - Ncoa6 NO B[a]P_1 chr2 155802125 155802125 G T exonic Cep250 nonsynonymous SNV NM_001129999:c.G2480T:p.G827V exonic Cep250 nonsynonymous SNV uc008nlt.2:c.G2483T:p.G828V exonic ENSMUSG00000038241 nonsynonymous SNV ENSMUST00000039994:c.G2480T:p.G827V 2qH1 NA NA chr2 155802125 TAGxGGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.89919 0.899314 0.999863 71 0 0 9.334636 0.119048 0.02 -0.36832 37 5 1055 136 60 60 0 0 GG 6.015825 20 0 562 0 KEEP + Cep250 YES B[a]P_1 chr2 156392686 156392686 A C exonic Aar2 nonsynonymous SNV NM_026661:c.A1073C:p.K358T exonic 0610011L14Rik nonsynonymous SNV uc008nnp.2:c.A1073C:p.K358T exonic ENSMUSG00000027628 nonsynonymous SNV ENSMUST00000029158:c.A1073C:p.K358T 2qH1 NA NA chr2 156392686 AGAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 87 0 0 7.34218 0.113636 0.02 -0.385774 39 5 1091 117 60 60 0 0 AA 9.623589 32 0 879 0 KEEP + Aar2 NO B[a]P_1 chr2 156846304 156846304 C A exonic 9830001H06Rik synonymous SNV NM_001164663:c.G4440T:p.L1480L exonic 9830001H06Rik synonymous SNV uc008nol.2:c.G4440T:p.L1480L exonic ENSMUSG00000055485 synonymous SNV ENSMUST00000069098:c.G4440T:p.L1480L 2qH1 NA NA chr2 156846304 CCTxAGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582561 0.58293 0.999366 45 0 0 18.146975 0.307692 0.02 -0.227994 18 8 514 213 60 60 0 0 CC 5.114077 17 0 486 0 KEEP - 9830001H06Rik YES B[a]P_1 chr2 157048960 157048960 G T exonic Mroh8 nonsynonymous SNV NM_001039557:c.C2214A:p.D738E exonic 4922505G16Rik nonsynonymous SNV uc008nou.2:c.C2214A:p.D738E exonic ENSMUSG00000074627 nonsynonymous SNV ENSMUST00000099137:c.C1947A:p.D649E 2qH1 NA NA chr2 157048960 CTTxTCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 127 0 0 29.50802 0.25 0.02 1.239343 39 13 1059 360 60 60 0 0 GG 15.641328 52 0 1460 0 KEEP - Mroh8 YES B[a]P_1 chr2 157121173 157121173 T G intronic Rpn2 NA NA intronic Rpn2 NA NA intronic ENSMUSG00000027642 NA NA 2qH1 NA NA chr2 157121173 GAGxTTA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999406 0.999407 0.999999 130 3 0 23.013409 0.146341 0.02 0.976197 70 12 1940 321 60 60 0 0 TT 10.527308 35 0 970 0 KEEP + Rpn2 NO B[a]P_1 chr2 157123159 157123159 G C exonic Rpn2 nonsynonymous SNV NM_019642:c.G732C:p.K244N exonic Rpn2 nonsynonymous SNV uc008now.1:c.G732C:p.K244N exonic ENSMUSG00000027642 nonsynonymous SNV ENSMUST00000029171:c.G636C:p.K212N 2qH1 NA NA chr2 157123159 GAAxAAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 142 0 0 29.71286 0.185185 0.02 0.887182 66 15 1866 394 60 60 0 0 GG 15.342596 51 0 1468 0 KEEP + Rpn2 NO B[a]P_1 chr2 158022167 158022167 G T exonic D630003M21Rik synonymous SNV NM_001131021:c.C3094A:p.R1032R exonic D630003M21Rik synonymous SNV uc008npv.2:c.C3094A:p.R1032R exonic ENSMUSG00000037813 synonymous SNV ENSMUST00000046944:c.C3094A:p.R1032R 2qH1 NA NA chr2 158022167 GCCxCTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984149 0.984161 0.999988 91 1 0 34.884784 0.258621 0.02 1.18799 43 15 1043 421 60 60 0 0 GG 8.003008 27 0 626 0 KEEP - D630003M21Rik YES B[a]P_1 chr2 158441303 158441303 C G UTR3 Slc32a1 NA NA UTR3 Slc32a1 NA NA UTR3 ENSMUSG00000037771 NA NA 2qH1 NA NA chr2 158441303 TTGxCTG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 181 2 0 24.014958 0.171429 0.02 1.08174 58 12 1578 322 60 60 0 0 CC 25.500066 85 0 2308 0 KEEP + Slc32a1 NO B[a]P_1 chr2 162760473 162760473 A T exonic Srsf6 stopgain SNV NM_026499:c.A1000T:p.R334X exonic Srsf6 stopgain SNV uc008nsc.2:c.A1000T:p.R334X exonic ENSMUSG00000016921 stopgain SNV ENSMUST00000130411:c.A1000T:p.R334X 2qH2 NA NA chr2 162760473 TCCxGAT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 244 2 0 56.65748 0.231481 0.02 2.541655 83 25 2352 701 60 60 0 0 AA 30.671006 102 0 2831 0 KEEP + Srsf6 NO B[a]P_1 chr2 163391865 163391865 G C exonic Hnf4a nonsynonymous SNV NM_008261:c.G901C:p.G301R exonic Hnf4a nonsynonymous SNV uc008nsz.2:c.G835C:p.G279R exonic ENSMUSG00000017950 nonsynonymous SNV ENSMUST00000018094:c.G901C:p.G301R 2qH3 NA NA chr2 163391865 AAGxGGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 183 1 0 53.25759 0.270833 0.02 0.85372 70 26 1947 652 60 60 0 0 GG 17.703248 59 0 1578 0 KEEP + Hnf4a NO B[a]P_1 chr2 163993729 163993729 A C exonic Kcns1 nonsynonymous SNV NM_008435:c.T845G:p.V282G exonic Kcns1 nonsynonymous SNV uc008ntv.1:c.T845G:p.V282G exonic ENSMUSG00000040164 nonsynonymous SNV ENSMUST00000045196:c.T845G:p.V282G 2qH3 NA NA chr2 163993729 AGCxCCG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 341 1 0 60.781654 0.153439 0.02 3.723741 160 29 4283 821 60 60 0 0 AA 30.941129 103 0 2717 0 KEEP - Kcns1 NO B[a]P_1 chr2 164286849 164286849 C G UTR5 Sys1 NA NA UTR5 Sys1 NA NA UTR5 "ENSMUSG00000045503,ENSMUSG00000090996" NA NA 2qH3 NA NA chr2 164286849 CTGxCGA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 185 0 0 37.744137 0.2 0.02 0.853866 72 18 1953 487 60 60 0 0 CC 17.614945 59 0 1542 0 KEEP + Sys1 NO B[a]P_1 chr2 164646785 164646785 C T exonic Zswim3 nonsynonymous SNV NM_178375:c.C1684T:p.H562Y exonic Zswim3 nonsynonymous SNV uc008nwh.1:c.C1684T:p.H562Y exonic ENSMUSG00000045822 nonsynonymous SNV ENSMUST00000052107:c.C1684T:p.H562Y 2qH3 NA NA chr2 164646785 CGCxACA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 134 2 0 10.883864 0.085714 0.02 1.180023 64 6 1767 169 60 60 0 0 CC 13.833913 46 0 1281 0 KEEP + Zswim3 NO B[a]P_1 chr2 165122843 165122843 T G intronic Elmo2 NA NA intronic Elmo2 NA NA intronic ENSMUSG00000017670 NA NA 2qH3 NA NA chr2 165122843 GACxTAC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 366 1 0 45.982191 0.147541 0.02 3.366026 156 27 4354 663 60 60 0 0 TT 37.571862 125 0 3415 0 KEEP - Elmo2 NO B[a]P_1 chr2 168094727 168094727 C G exonic Kcng1 nonsynonymous SNV NM_001081134:c.G16C:p.G6R exonic Kcng1 nonsynonymous SNV uc008oat.1:c.G16C:p.G6R exonic ENSMUSG00000074575 nonsynonymous SNV ENSMUST00000099069:c.G16C:p.G6R 2qH3 NA NA chr2 168094727 CTCxCGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984055 0.984161 0.999892 95 1 0 8.87847 0.089286 0.02 1.186638 51 5 1438 138 60 60 0 0 CC 6.918523 23 0 647 0 KEEP - Kcng1 NO B[a]P_1 chr2 168469457 168469457 G T exonic Atp9a nonsynonymous SNV NM_015731:c.C2476A:p.R826S exonic Atp9a nonsynonymous SNV uc008obb.1:c.C2428A:p.R810S exonic ENSMUSG00000027546 nonsynonymous SNV ENSMUST00000029060:c.C2476A:p.R826S 2qH3 NA NA chr2 168469457 AGCxGCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 191 2 0 60.921396 0.288889 0.02 0.906563 64 26 1617 720 60 60 0 0 GG 21.010666 70 0 1761 0 KEEP - Atp9a YES B[a]P_1 chr2 173746047 173746047 G A intergenic "Vapb(dist=136210),Stx16(dist=156505)" NA NA intergenic "Vapb(dist=136210),Stx16(dist=155775)" NA NA ncRNA_exonic ENSMUSG00000082543 NA NA 2qH4 NA NA chr2 173746047 CTTxATG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 695 4 6 117.272459 0.221774 0.02 5.88371 193 55 5457 1480 60 60 0 0 GG 101.969069 339 0 9707 0 KEEP NA Vapb NO B[a]P_1 chr2 177877101 177877101 C A exonic Phactr3 synonymous SNV NM_028806:c.C12A:p.S4S exonic Phactr3 synonymous SNV uc008ohk.2:c.C12A:p.S4S exonic ENSMUSG00000027525 synonymous SNV ENSMUST00000103066:c.C12A:p.S4S 2qH4 NA NA chr2 177877101 ATCxGAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 237 4 0 58.669789 0.20155 0.02 2.456475 103 26 2716 744 60 60 0 0 CC 18.03683 60 0 1575 0 KEEP + Phactr3 YES B[a]P_1 chr2 179917825 179917825 G T intronic Lama5 NA NA intronic Lama5 NA NA intronic ENSMUSG00000015647 NA NA 2qH4 NA NA chr2 179917825 GAAxGAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 178 1 0 34.082882 0.158879 0.02 2.354442 90 17 2514 463 60 60 0 0 GG 13.534253 45 0 1254 0 KEEP - Lama5 YES B[a]P_1 chr2 180396485 180396485 T A exonic Dido1 nonsynonymous SNV NM_175551:c.A4330T:p.M1444L exonic Dido1 nonsynonymous SNV uc008ojq.1:c.A4330T:p.M1444L exonic ENSMUSG00000038914 nonsynonymous SNV ENSMUST00000087517:c.A4330T:p.M1444L 2qH4 NA NA chr2 180396485 TCAxACA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 393 0 0 13.670405 0.049451 0.02 3.187621 173 9 4624 249 60 60 0 0 TT 44.237172 157 1 4208 28 KEEP - Dido1 NO B[a]P_1 chr2 181116943 181116943 G A exonic Lime1 nonsynonymous SNV NM_023684:c.G22A:p.A8T exonic Lime1 nonsynonymous SNV uc008omd.1:c.G22A:p.A8T exonic ENSMUSG00000090077 nonsynonymous SNV ENSMUST00000048077:c.G22A:p.A8T 2qH4 NA NA chr2 181116943 TCAxCCC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 145 0 0 27.32292 0.185714 0.02 1.073216 57 13 1579 357 60 60 0 0 GG 14.405459 48 0 1326 0 KEEP + Lime1 NO B[a]P_1 chr2 181116944 181116944 C A exonic Lime1 nonsynonymous SNV NM_023684:c.C23A:p.A8D exonic Lime1 nonsynonymous SNV uc008omd.1:c.C23A:p.A8D exonic ENSMUSG00000090077 nonsynonymous SNV ENSMUST00000048077:c.C23A:p.A8D 2qH4 NA NA chr2 181116944 CAGxCCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 145 0 0 30.382505 0.197183 0.02 1.064305 57 14 1575 390 60 60 0 0 CC 14.40287 48 0 1308 0 KEEP + Lime1 YES B[a]P_1 chr2 181356945 181356945 A G exonic Prpf6 nonsynonymous SNV NM_133701:c.A694G:p.T232A exonic Prpf6 nonsynonymous SNV uc008omy.1:c.A694G:p.T232A exonic ENSMUSG00000002455 nonsynonymous SNV ENSMUST00000002529:c.A694G:p.T232A 2qH4 NA NA chr2 181356945 ATGxCAC A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 90 0 0 33.996299 0.325581 0.02 -0.377061 29 14 809 391 60 60 0 0 AA 9.920496 33 0 890 0 KEEP + Prpf6 NO B[a]P_1 chr2 181382087 181382087 A T exonic Prpf6 synonymous SNV NM_133701:c.A1863T:p.A621A exonic Prpf6 synonymous SNV uc008omz.1:c.A1863T:p.A621A exonic ENSMUSG00000002455 synonymous SNV ENSMUST00000002529:c.A1863T:p.A621A 2qH4 NA NA chr2 181382087 GGCxGGG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 114 0 0 29.779192 0.215385 0.02 1.223613 51 14 1419 378 60 60 0 0 AA 12.632392 42 0 1162 0 KEEP + Prpf6 NO B[a]P_1 chr2 181631969 181631969 G A intergenic "Polr3k(dist=26438),Gm14496(dist=93962)" NA NA intergenic "Polr3k(dist=26438),NONE(dist=NONE)" NA NA ncRNA_exonic ENSMUSG00000083397 NA NA 2qH4 "Score=0.944333;Name=No.54744,chr14:90296029" NA chr2 181631969 AATxACC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 240 4 0 8.527167 0.049587 0.02 2.133585 115 6 3280 160 60 60 0 0 GG 27.977044 93 0 2671 0 KEEP NA Polr3k NO B[a]P_1 chr2 21748901 21748901 A G exonic Gpr158 nonsynonymous SNV NM_001004761:c.A3184G:p.K1062E exonic Gpr158 nonsynonymous SNV uc008inf.1:c.A3184G:p.K1062E exonic ENSMUSG00000045967 nonsynonymous SNV ENSMUST00000055946:c.A3184G:p.K1062E 2qA3 NA NA chr2 21748901 GACxAGA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 103 0 0 47.010204 0.4 0.02 1.248247 30 20 824 521 60 60 0 0 AA 12.031041 40 0 1104 0 KEEP + Gpr158 NO B[a]P_1 chr2 22187737 22187737 A G exonic Myo3a synonymous SNV NM_148413:c.A381G:p.G127G exonic Myo3a synonymous SNV uc008ing.2:c.A357G:p.G119G exonic ENSMUSG00000025716 synonymous SNV ENSMUST00000153002:c.A357G:p.G119G 2qA3 NA NA chr2 22187737 GGGxGAA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 93 0 0 12.671204 0.181818 0.02 -0.289379 27 6 759 166 60 60 0 0 AA 12.93337 43 0 1194 0 KEEP + Myo3a NO B[a]P_1 chr2 22672559 22672559 T C intronic Apbb1ip NA NA intronic Apbb1ip NA NA intronic ENSMUSG00000026786 NA NA 2qA3 NA NA chr2 22672559 TACxTAA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992924 0.992926 0.999999 109 0 0 10.031913 0.09375 0.02 1.036182 58 6 1595 158 60 60 0 0 TT 10.528147 35 0 985 0 KEEP + Apbb1ip NO B[a]P_1 chr2 25068652 25068652 G T exonic 4933433C11Rik stopgain SNV NM_028961:c.C828A:p.C276X exonic 4933433C11Rik stopgain SNV uc008iqo.2:c.C249A:p.C83X exonic ENSMUSG00000036770 stopgain SNV ENSMUST00000043774:c.C828A:p.C276X 2qA3 NA NA chr2 25068652 GTAxCAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 138 0 0 47.036259 0.253012 0.02 0.967507 62 21 1738 574 60 60 0 0 GG 12.934319 43 0 1212 0 KEEP - 4933433C11Rik YES B[a]P_1 chr2 25153491 25153491 G T UTR3 E130003G02Rik NA NA ncRNA_exonic AK076389 NA NA ncRNA_exonic ENSMUSG00000085830 NA NA 2qA3 NA NA chr2 25153491 ACCxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976777 0.976865 0.999909 83 0 0 13.848684 0.127273 0.02 1.213713 48 7 1169 196 60 60 0 0 GG 7.207384 24 0 606 0 KEEP - E130003G02Rik YES B[a]P_1 chr2 25532567 25532567 G T intronic Lcn6 NA NA intronic Lcn6 NA NA intronic ENSMUSG00000045684 NA NA 2qA3 NA NA chr2 25532567 GGAxGAC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986151 0.986153 0.999997 105 0 0 15.658186 0.135593 0.02 1.08021 51 8 1418 220 60 60 0 0 GG 9.262428 31 0 847 0 KEEP + Lcn6 YES B[a]P_1 chr2 25754197 25754197 T C intronic Kcnt1 NA NA intronic Kcnt1 NA NA intronic ENSMUSG00000058740 NA NA 2qA3 NA NA chr2 25754197 CACxGAC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 110 1 0 22.812308 0.192982 0.02 1.195379 46 11 1315 297 60 60 0 0 TT 11.129032 37 0 1032 0 KEEP + Kcnt1 NO B[a]P_1 chr2 25768249 25768249 C A intronic Kcnt1 NA NA intronic "Kcnt1,mKIAA1422" NA NA intronic ENSMUSG00000058740 NA NA 2qA3 NA NA chr2 25768249 GCTxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 143 1 0 37.695975 0.230769 0.02 1.01133 60 18 1700 474 60 60 0 0 CC 13.836621 46 0 1296 0 KEEP + Kcnt1 YES B[a]P_1 chr2 26281260 26281260 C A intronic Sec16a NA NA intronic Sec16a NA NA intronic ENSMUSG00000026924 NA NA 2qA3 NA NA chr2 26281260 AGCxAAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 187 0 0 60.410941 0.288889 0.02 0.906034 64 26 1785 715 60 60 0 0 CC 21.958075 73 0 2056 0 KEEP - Sec16a YES B[a]P_1 chr2 26699340 26699340 C A exonic Abo synonymous SNV NM_030718:c.G366T:p.V122V exonic Abo synonymous SNV uc008iwb.1:c.G366T:p.V122V exonic ENSMUSG00000015787 synonymous SNV ENSMUST00000102900:c.G366T:p.V122V 2qA3 NA NA chr2 26699340 TCCxACC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 120 0 0 24.647659 0.166667 0.02 1.064041 60 12 1641 330 60 60 0 0 CC 11.732391 39 0 1119 0 KEEP - Abo YES B[a]P_1 chr2 28527990 28527990 G T exonic Tsc1 nonsynonymous SNV NM_022887:c.G1107T:p.L369F exonic Tsc1 nonsynonymous SNV uc008iyv.1:c.G1107T:p.L369F exonic ENSMUSG00000026812 nonsynonymous SNV ENSMUST00000113870:c.G1107T:p.L369F 2qA3 NA NA chr2 28527990 TTTxTCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 226 2 0 25.005521 0.115044 0.02 2.399872 100 13 2683 363 60 60 0 0 GG 26.76893 89 0 2467 0 KEEP + Tsc1 YES B[a]P_1 chr2 28771149 28771149 C A exonic Barhl1 synonymous SNV NM_019446:c.G51T:p.A17A exonic Barhl1 synonymous SNV uc008izh.2:c.G51T:p.A17A exonic ENSMUSG00000026805 synonymous SNV ENSMUST00000050776:c.G51T:p.A17A 2qA3 NA NA chr2 28771149 GCCxGCT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 104 0 0 9.604738 0.09434 0.02 1.231208 48 5 1077 144 60 60 0 0 CC 11.10817 37 0 862 0 KEEP - Barhl1 YES B[a]P_1 chr2 30202170 30202170 T A exonic Sh3glb2 nonsynonymous SNV NM_139302:c.A699T:p.E233D exonic Sh3glb2 nonsynonymous SNV uc008jce.1:c.A636T:p.E212D exonic ENSMUSG00000026860 nonsynonymous SNV ENSMUST00000113620:c.A636T:p.E212D 2qB NA NA chr2 30202170 CACxTCT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996231 0.996233 0.999999 125 3 0 10.026336 0.086957 0.02 0.992289 63 6 1773 160 60 60 0 0 TT 10.527255 35 0 971 0 KEEP - Sh3glb2 NO B[a]P_1 chr2 31279582 31279582 C A intergenic "Ncs1(dist=128591),Ass1(dist=46208)" NA NA intergenic "Ncs1(dist=128591),Hmcn2(dist=14000)" NA NA exonic ENSMUSG00000055632 nonsynonymous SNV ENSMUST00000113532:c.C10747A:p.L3583I 2qB NA NA chr2 31279582 GTGxTCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 294 3 0 17.405831 0.066265 0.02 3.337026 155 11 4345 297 60 60 0 0 CC 25.568075 85 0 2390 0 KEEP NA Ncs1 YES B[a]P_1 chr2 31314547 31314547 G A intergenic "Ncs1(dist=163556),Ass1(dist=11243)" NA NA intronic Hmcn2 NA NA intronic ENSMUSG00000055632 NA NA 2qB NA NA chr2 31314547 CTGxTCT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 254 1 0 76.924457 0.257576 0.02 2.224235 98 34 2722 934 60 60 0 0 GG 27.608881 92 0 2490 0 KEEP + Ncs1 NO B[a]P_1 chr2 35148287 35148287 G T intronic Gsn NA NA intronic Gsn NA NA intronic ENSMUSG00000026879 NA NA 2qB NA NA chr2 35148287 CAGxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.775649 0.78106 0.993072 50 0 0 10.224121 0.147059 0.02 -0.298152 29 5 815 140 60 60 0 0 GG 3.308778 11 0 308 0 KEEP + Gsn YES B[a]P_1 chr2 36383624 36383624 A T exonic Olfr342 nonsynonymous SNV NM_146948:c.A691T:p.I231F exonic Olfr342 nonsynonymous SNV uc008jlr.1:c.A691T:p.I231F exonic ENSMUSG00000061305 nonsynonymous SNV ENSMUST00000074192:c.A691T:p.I231F 2qB NA NA chr2 36383624 TCCxTCA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 330 2 0 54.83421 0.14433 0.02 3.385436 166 28 4515 762 60 60 0 0 AA 32.777333 109 0 2920 0 KEEP + Olfr342 NO B[a]P_1 chr2 43712291 43712291 C A intronic Arhgap15 NA NA intronic Arhgap15 NA NA intronic ENSMUSG00000049744 NA NA 2qB NA NA chr2 43712291 TTCxAAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 141 0 0 48.433613 0.338983 0.02 1.177853 39 20 1093 553 60 60 0 0 CC 18.649261 62 0 1752 0 KEEP + Arhgap15 YES B[a]P_1 chr2 4902284 4902284 C T exonic Ucma nonsynonymous SNV NM_026754:c.C155T:p.A52V exonic Ucma nonsynonymous SNV uc008ife.2:c.C155T:p.A52V exonic ENSMUSG00000026668 nonsynonymous SNV ENSMUST00000027978:c.C155T:p.A52V 2qA1 NA NA chr2 4902284 CAGxGGA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612341 0.612407 0.999892 65 0 0 12.556618 0.222222 0.02 -0.236576 21 6 526 159 60 60 0 0 CC 6.853627 23 0 594 0 KEEP + Ucma NO B[a]P_1 chr2 60170466 60170466 T G exonic Ly75 nonsynonymous SNV NM_013825:c.A2505C:p.E835D exonic Ly75 nonsynonymous SNV uc008jue.1:c.A1548C:p.E516D exonic ENSMUSG00000026980 nonsynonymous SNV ENSMUST00000028362:c.A2505C:p.E835D 2qC1.1 NA NA chr2 60170466 GGCxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 187 0 0 11.05535 0.08 0.02 0.623139 92 8 2604 193 60 60 0 0 TT 20.733397 69 0 1895 0 KEEP - Ly75 NO B[a]P_1 chr2 62313000 62313000 A T UTR3 Gcg NA NA UTR3 Gcg NA NA UTR3 ENSMUSG00000000394 NA NA 2qC1.3 NA NA chr2 62313000 ACGxGAT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 101 0 0 15.336954 0.2 0.02 -0.306911 28 7 781 196 60 60 0 0 AA 14.411331 48 0 1315 0 KEEP - Gcg NO B[a]P_1 chr2 67545669 67545669 G C intergenic "Xirp2(dist=181006),B3galt1(dist=397060)" NA NA intergenic "Xirp2(dist=181006),B3galt1(dist=410101)" NA NA ncRNA_exonic ENSMUSG00000083910 NA NA 2qC1.3 NA NA chr2 67545669 GGGxCAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 483 4 0 49.361101 0.15625 0.02 3.682915 135 25 3759 675 60 60 0 0 GG 76.872466 262 2 7182 16 KEEP NA Xirp2 NO B[a]P_1 chr2 68546998 68546998 G C intronic 4932414N04Rik NA NA intronic 4932414N04Rik NA NA intronic ENSMUSG00000048204 NA NA 2qC2 NA NA chr2 68546998 TGTxAGT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 91 0 0 41.999739 0.421053 0.02 -0.333234 22 16 616 456 60 60 0 0 GG 10.52904 35 0 1006 0 KEEP + 4932414N04Rik NO B[a]P_1 chr2 69122628 69122628 A G intronic Abcb11 NA NA intronic Abcb11 NA NA intronic ENSMUSG00000027048 NA NA 2qC2 NA NA chr2 69122628 CCAxAGA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 48 0 0 10.770261 0.185185 0.02 -0.236722 22 5 591 140 60 60 0 0 AA 5.11363 17 0 477 0 KEEP - Abcb11 NO B[a]P_1 chr2 69294966 69294966 C T exonic Lrp2 nonsynonymous SNV NM_001081088:c.G11183A:p.R3728Q exonic Lrp2 nonsynonymous SNV uc008jyc.1:c.G11183A:p.R3728Q exonic ENSMUSG00000027070 nonsynonymous SNV ENSMUST00000080953:c.G11183A:p.R3728Q 2qC2 NA NA chr2 69294966 CACxGGA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 95 0 0 14.258687 0.148936 0.02 -0.411799 40 7 977 195 60 60 0 0 CC 11.111831 37 0 878 0 KEEP - Lrp2 NO B[a]P_1 chr2 69294976 69294976 C A exonic Lrp2 nonsynonymous SNV NM_001081088:c.G11173T:p.G3725W exonic Lrp2 nonsynonymous SNV uc008jyc.1:c.G11173T:p.G3725W exonic ENSMUSG00000027070 nonsynonymous SNV ENSMUST00000080953:c.G11173T:p.G3725W 2qC2 NA NA chr2 69294976 CCCxAGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 84 0 0 11.788574 0.142857 0.02 -0.368271 36 6 998 164 60 60 0 0 CC 10.829915 36 0 1034 0 KEEP - Lrp2 YES B[a]P_1 chr2 69321561 69321561 C A exonic Lrp2 synonymous SNV NM_001081088:c.G6882T:p.V2294V exonic Lrp2 synonymous SNV uc008jyc.1:c.G6882T:p.V2294V exonic ENSMUSG00000027070 synonymous SNV ENSMUST00000080953:c.G6882T:p.V2294V 2qC2 NA NA chr2 69321561 ATCxACC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 148 2 0 46.364003 0.285714 0.02 1.081769 50 20 1361 550 60 60 0 0 CC 18.639366 62 0 1715 0 KEEP - Lrp2 YES B[a]P_1 chr2 69321563 69321563 C A exonic Lrp2 nonsynonymous SNV NM_001081088:c.G6880T:p.V2294L exonic Lrp2 nonsynonymous SNV uc008jyc.1:c.G6880T:p.V2294L exonic ENSMUSG00000027070 nonsynonymous SNV ENSMUST00000080953:c.G6880T:p.V2294L 2qC2 NA NA chr2 69321563 CCAxCCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 149 2 0 43.912986 0.28169 0.02 0.974875 51 20 1380 527 60 60 0 0 CC 18.647688 62 0 1711 0 KEEP - Lrp2 YES B[a]P_1 chr2 69359929 69359929 T G exonic Lrp2 nonsynonymous SNV NM_001081088:c.A1819C:p.S607R exonic Lrp2 nonsynonymous SNV uc008jyc.1:c.A1819C:p.S607R exonic ENSMUSG00000027070 nonsynonymous SNV ENSMUST00000080953:c.A1819C:p.S607R 2qC2 NA NA chr2 69359929 AGCxTAT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 93 0 0 19.036049 0.227273 0.02 -0.385646 34 10 918 245 60 60 0 0 TT 9.323409 31 0 858 0 KEEP - Lrp2 NO B[a]P_1 chr2 70563580 70563580 G A exonic Tlk1 nonsynonymous SNV NM_172664:c.C1291T:p.H431Y exonic Tlk1 nonsynonymous SNV uc008jzt.1:c.C1291T:p.H431Y exonic ENSMUSG00000041997 nonsynonymous SNV ENSMUST00000038584:c.C1291T:p.H431Y 2qC2 NA NA chr2 70563580 TGTxAAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 277 4 0 15.516413 0.086538 0.02 2.478527 95 9 2686 245 60 60 0 0 GG 37.301444 124 0 3557 0 KEEP - Tlk1 NO B[a]P_1 chr2 76596669 76596669 C T intronic Ttn NA NA intronic Ttn NA NA ncRNA_intronic ENSMUSG00000086354 NA NA 2qC3 NA NA chr2 76596669 TGAxAGG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800136 0.800245 0.999863 66 0 0 22.379199 0.285714 0.02 -0.306847 25 10 679 267 60 60 0 0 CC 6.015468 20 0 558 0 KEEP - Ttn NO B[a]P_1 chr2 76719346 76719346 C A exonic Ttn nonsynonymous SNV NM_011652:c.G22225T:p.D7409Y exonic Ttn nonsynonymous SNV uc008kfn.1:c.G22225T:p.D7409Y exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000148747:c.G3952T:p.D1318Y 2qC3 NA NA chr2 76719346 CATxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 161 0 0 45.073346 0.227273 0.02 1.022376 68 20 1699 560 60 60 0 0 CC 14.724394 49 0 1246 0 KEEP - Ttn YES B[a]P_1 chr2 76733215 76733215 G T exonic Ttn synonymous SNV NM_011652:c.C15984A:p.G5328G exonic Ttn synonymous SNV uc008kfn.1:c.C15984A:p.G5328G exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000134720:c.C5961A:p.G1987G 2qC3 NA NA chr2 76733215 GATxCCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 119 0 0 35.545146 0.283019 0.02 1.230454 38 15 1070 421 60 60 0 0 GG 13.536592 45 0 1276 0 KEEP - Ttn YES B[a]P_1 chr2 76734935 76734935 A G exonic Ttn nonsynonymous SNV NM_011652:c.T14696C:p.V4899A exonic Ttn nonsynonymous SNV uc008kfn.1:c.T14696C:p.V4899A exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000134720:c.T4673C:p.V1558A 2qC3 NA NA chr2 76734935 GAAxCTC A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 66 0 0 15.242218 0.194444 0.02 -0.315647 29 7 780 196 60 60 0 0 AA 8.120171 27 0 736 0 KEEP - Ttn NO B[a]P_1 chr2 76746558 76746558 T G exonic Ttn nonsynonymous SNV NM_028004:c.A11693C:p.D3898A exonic Ttn nonsynonymous SNV uc008kfo.1:c.A11693C:p.D3898A exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.A11693C:p.D3898A 2qC3 NA NA chr2 76746558 ACAxCAG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 261 2 0 20.627433 0.094017 0.02 2.561203 106 11 2907 312 60 60 0 0 TT 30.032925 100 0 2697 0 KEEP - Ttn NO B[a]P_1 chr2 79550114 79550114 C A exonic Ppp1r1c nonsynonymous SNV NM_172420:c.C140A:p.P47Q exonic Ppp1r1c nonsynonymous SNV uc008kgy.1:c.C140A:p.P47Q exonic ENSMUSG00000034683 nonsynonymous SNV ENSMUST00000040863:c.C140A:p.P47Q 2qC3 NA NA chr2 79550114 CCCxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 145 0 0 40.425164 0.236842 0.02 1.028767 58 18 1630 499 60 60 0 0 CC 16.244522 54 0 1543 0 KEEP + Ppp1r1c YES B[a]P_1 chr2 79718276 79718276 T A intronic Pde1a NA NA intronic Pde1a NA NA intronic ENSMUSG00000059173 NA NA 2qC3 NA NA chr2 79718276 AACxCAC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 117 0 0 8.165207 0.084746 0.02 1.177855 54 5 1524 132 60 60 0 0 TT 14.138168 47 0 1329 0 KEEP - Pde1a NO B[a]P_1 chr2 80171414 80171414 A T intronic Dnajc10 NA NA intronic Dnajc10 NA NA intronic ENSMUSG00000027006 NA NA 2qC3 NA NA chr2 80171414 CCCxCTT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582561 0.58293 0.999366 50 0 0 7.86512 0.153846 0.02 -0.227983 22 4 610 108 60 60 0 0 AA 5.111645 17 0 454 0 KEEP + Dnajc10 NO B[a]P_1 chr2 85610076 85610076 G T exonic Olfr1013 nonsynonymous SNV NM_146762:c.G117T:p.M39I exonic Olfr1013 nonsynonymous SNV uc008kku.1:c.G117T:p.M39I exonic ENSMUSG00000053287 nonsynonymous SNV ENSMUST00000065626:c.G117T:p.M39I 2qD NA NA chr2 85610076 GATxGGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 187 2 0 21.504683 0.123596 0.02 0.914784 78 11 2181 307 60 60 0 0 GG 23.463381 78 0 2210 0 KEEP + Olfr1013 YES B[a]P_1 chr2 85881910 85881910 C A exonic Olfr1033 nonsynonymous SNV NM_146578:c.C437A:p.P146H exonic Olfr1033 nonsynonymous SNV uc012byr.1:c.C437A:p.P146H exonic ENSMUSG00000045392 nonsynonymous SNV ENSMUST00000111589:c.C437A:p.P146H 2qD NA NA chr2 85881910 TCCxCTA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 406 0 0 48.854187 0.12037 0.02 4.780138 190 26 5336 709 60 60 0 0 CC 43.556816 145 0 4030 0 KEEP + Olfr1033 YES B[a]P_1 chr2 87366588 87366588 C A intergenic "Pramel6(dist=15566),Olfr153(dist=5604)" NA NA intergenic "Pramel6(dist=15566),Olfr153(dist=5604)" NA NA downstream ENSMUSG00000082908 NA NA 2qD NA NA chr2 87366588 TTAxGTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 72 3 0 20.754916 0.230769 0.02 -0.341471 30 9 675 256 60 60 0 0 CC 8.708856 29 0 681 0 KEEP NA Pramel6 YES B[a]P_1 chr2 88692863 88692863 G C exonic Olfr1204 nonsynonymous SNV NM_146463:c.G755C:p.C252S exonic Olfr1204 nonsynonymous SNV uc008kqk.1:c.G755C:p.C252S exonic ENSMUSG00000061798 nonsynonymous SNV ENSMUST00000078631:c.G755C:p.C252S 2qE1 NA NA chr2 88692863 CCTxCAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 269 2 1 31.892676 0.123077 0.02 2.250484 114 16 3176 453 60 60 0 0 GG 29.780284 99 0 2812 0 KEEP + Olfr1204 NO B[a]P_1 chr2 90744789 90744789 C A exonic Ndufs3 nonsynonymous SNV NM_026688:c.G16T:p.A6S exonic Ndufs3 nonsynonymous SNV uc008ktr.1:c.G16T:p.A6S exonic ENSMUSG00000005510 nonsynonymous SNV ENSMUST00000005647:c.G16T:p.A6S 2qE1 NA NA chr2 90744789 TGGxTGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967321 0.967425 0.999892 78 0 0 40.839554 0.326923 0.02 1.239301 35 17 957 470 60 60 0 0 CC 6.894918 23 0 596 0 KEEP - Ndufs3 YES B[a]P_1 chr2 90848313 90848313 T G intronic Celf1 NA NA intronic Celf1 NA NA intronic ENSMUSG00000005506 NA NA 2qE1 NA NA chr2 90848313 ATCxTTT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693584 0.693668 0.999879 55 0 0 9.849561 0.2 0.02 -0.263006 24 6 681 135 60 60 0 0 TT 6.616008 22 0 609 0 KEEP + Celf1 NO B[a]P_1 chr2 90964649 90964649 G T exonic Mybpc3 unknown UNKNOWN exonic Mybpc3 synonymous SNV uc008kul.1:c.G1332T:p.T444T exonic ENSMUSG00000002100 synonymous SNV ENSMUST00000028718:c.G1347T:p.T449T 2qE1 NA NA chr2 90964649 CACxGAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 222 0 0 27.336633 0.101351 0.02 2.290005 133 15 3510 412 70 60 0 0 GG 15.627337 52 0 1329 0 KEEP + Mybpc3 YES B[a]P_1 chr2 93680155 93680155 A C intronic Accs NA NA intronic Accs NA NA intronic ENSMUSG00000040272 NA NA 2qE1 NA NA chr2 93680155 CCCxCTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 213 0 0 85.655206 0.315315 0.02 2.515409 76 35 2100 990 60 60 0 0 AA 23.449005 78 0 2105 0 KEEP - Accs NO B[a]P_1 chr3 103855203 103855203 A C exonic Magi3 synonymous SNV NM_001159354:c.T1488G:p.G496G exonic Magi3 synonymous SNV uc008qua.2:c.T1488G:p.G496G exonic ENSMUSG00000052539 synonymous SNV ENSMUST00000064371:c.T1488G:p.G496G 3qF2.2 NA NA chr3 103855203 ATAxCCA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 147 3 0 12.708084 0.111111 0.02 1.142852 56 7 1510 189 60 60 0 0 AA 21.94559 73 0 1941 0 KEEP - Magi3 NO B[a]P_1 chr3 105789501 105789501 G T exonic Ovgp1 nonsynonymous SNV NM_007696:c.G1671T:p.K557N exonic Ovgp1 nonsynonymous SNV uc008qvq.1:c.G1671T:p.K557N exonic ENSMUSG00000074340 nonsynonymous SNV ENSMUST00000000573:c.G1671T:p.K557N 3qF2.2 NA NA chr3 105789501 TAAxACC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 531 0 0 109.754737 0.251232 0.02 4.600925 152 51 4274 1351 60 60 0 0 GG 80.311067 267 0 7598 0 KEEP + Ovgp1 YES B[a]P_1 chr3 106100664 106100664 T G intergenic "Chi3l4(dist=78267),BC051070(dist=89638)" NA NA intergenic "Chi3l4(dist=78267),BC051070(dist=89638)" NA NA intergenic "ENSMUSG00000040809(dist=78239),ENSMUSG00000027902(dist=89642)" NA NA 3qF2.3 NA NA chr3 106100664 GATxTCC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 102 1 0 13.956207 0.148936 0.02 -0.412127 40 7 1103 192 60 60 0 0 TT 12.631165 42 0 1151 0 KEEP NA Chi3l4 NO B[a]P_1 chr3 106900778 106900778 C T intergenic "AI504432(dist=43538),Kcna2(dist=3707)" NA NA ncRNA_exonic AK080695 NA NA UTR3 ENSMUSG00000050179 NA NA 3qF2.3 NA NA chr3 106900778 TCTxTCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 78 0 0 28.014553 0.3 0.02 -0.350748 28 12 782 329 60 60 0 0 CC 9.024728 30 0 857 0 KEEP + AI504432 NO B[a]P_1 chr3 107473103 107473103 G A intronic Ahcyl1 NA NA intronic Ahcyl1 NA NA intronic ENSMUSG00000027893 NA NA 3qF2.3 NA NA chr3 107473103 GAAxGTA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457707 0.457757 0.999892 56 0 0 13.364943 0.272727 0.02 -0.192919 16 6 454 161 60 60 0 0 GG 6.918698 23 0 654 0 KEEP - Ahcyl1 NO B[a]P_1 chr3 107473104 107473104 G A intronic Ahcyl1 NA NA intronic Ahcyl1 NA NA intronic ENSMUSG00000027893 NA NA 3qF2.3 NA NA chr3 107473104 AAGxTAT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457707 0.457757 0.999892 56 0 0 12.965231 0.272727 0.02 -0.192887 16 6 439 157 60 60 0 0 GG 6.917946 23 0 638 0 KEEP - Ahcyl1 NO B[a]P_1 chr3 108473874 108473874 T G exonic Clcc1 nonsynonymous SNV NM_001177770:c.T772G:p.L258V exonic Clcc1 nonsynonymous SNV uc008qzk.2:c.T757G:p.L253V exonic ENSMUSG00000027884 nonsynonymous SNV ENSMUST00000029483:c.T757G:p.L253V 3qF3 NA NA chr3 108473874 AATxTAT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 124 0 0 36.247199 0.280702 0.02 1.29405 41 16 1116 433 60 60 0 0 TT 12.633698 42 0 1180 0 KEEP + Clcc1 NO B[a]P_1 chr3 108684449 108684449 C A exonic Fndc7 synonymous SNV NM_001165965:c.G393T:p.V131V exonic Fndc7 synonymous SNV uc008qzv.2:c.G393T:p.V131V exonic ENSMUSG00000045326 synonymous SNV ENSMUST00000053065:c.G393T:p.V131V 3qF3 NA NA chr3 108684449 GCTxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 27 0 0 6.532393 0.272727 0.02 -0.096459 8 3 229 79 60 60 0 0 CC 3.600585 12 0 330 0 KEEP - Fndc7 YES B[a]P_1 chr3 108684450 108684450 A T exonic Fndc7 nonsynonymous SNV NM_001165965:c.T392A:p.V131E exonic Fndc7 nonsynonymous SNV uc008qzv.2:c.T392A:p.V131E exonic ENSMUSG00000045326 nonsynonymous SNV ENSMUST00000053065:c.T392A:p.V131E 3qF3 NA NA chr3 108684450 CTCxCAA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099086 0.099721 0.993634 25 0 0 7.078734 0.3 0.02 -0.087685 7 3 192 83 60 60 0 0 AA 3.608897 12 0 326 0 KEEP - Fndc7 NO B[a]P_1 chr3 114825498 114825498 C T exonic Olfm3 nonsynonymous SNV NM_153157:c.C1160T:p.T387I exonic Olfm3 nonsynonymous SNV uc008rbm.1:c.C1100T:p.T367I exonic ENSMUSG00000027965 nonsynonymous SNV ENSMUST00000051309:c.C1160T:p.T387I 3qF3 NA NA chr3 114825498 GCAxTGG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 99 0 0 40.473467 0.346939 0.02 -0.42963 32 17 868 461 60 60 0 0 CC 11.7301 39 0 1079 0 KEEP + Olfm3 NO B[a]P_1 chr3 127311581 127311581 G A intronic 4930422G04Rik NA NA intronic 4930422G04Rik NA NA intronic ENSMUSG00000051278 NA NA 3qG2 NA NA chr3 127311581 CCCxTGA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 58 0 0 7.940299 0.16 0.02 -0.219023 21 4 519 108 60 60 0 0 GG 6.910089 23 0 575 0 KEEP + 4930422G04Rik NO B[a]P_1 chr3 130286160 130286160 T G intronic Col25a1 NA NA intronic Col25a1 NA NA intronic ENSMUSG00000058897 NA NA 3qG3 NA NA chr3 130286160 GACxGGA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.99986 37 0 0 8.790177 0.333333 0.02 -0.105214 8 4 228 102 60 60 0 0 TT 5.714964 19 0 529 0 KEEP + Col25a1 NO B[a]P_1 chr3 144423650 144423650 G T exonic Clca1 nonsynonymous SNV NM_009899:c.C37A:p.L13M exonic Clca1 nonsynonymous SNV uc008rpx.1:c.C37A:p.L13M exonic ENSMUSG00000056025 nonsynonymous SNV ENSMUST00000029932:c.C37A:p.L13M 3qH2 "Score=0.949184;Name=No.81918,chr3:144448265" NA chr3 144423650 GCAxGGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 153 2 8 35.256689 0.213333 0.02 1.037521 59 16 1675 445 60 57 0 0 GG 16.227866 54 0 1506 0 KEEP - Clca1 YES B[a]P_1 chr3 144626671 144626671 A G exonic Clca6 nonsynonymous SNV NM_207208:c.T1082C:p.L361P exonic "AI747448,Clca6" nonsynonymous SNV uc008rqe.1:c.T1082C:p.L361P exonic ENSMUSG00000068547 nonsynonymous SNV ENSMUST00000029923:c.T1082C:p.L361P 3qH2 "Score=0.901101;Name=No.81920,chr3:144570868" NA chr3 144626671 ATCxGCT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 175 2 0 54.261563 0.358209 0.02 1.009993 43 24 1191 618 60 60 0 0 AA 24.965374 83 0 2309 0 KEEP - Clca6 NO B[a]P_1 chr3 145104355 145104355 A G exonic Col24a1 nonsynonymous SNV NM_027770:c.A2879G:p.H960R exonic Col24a1 nonsynonymous SNV uc008rqm.1:c.A2879G:p.H960R exonic ENSMUSG00000028197 nonsynonymous SNV ENSMUST00000029848:c.A2879G:p.H960R 3qH2 NA NA chr3 145104355 GACxTGG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.735522 0.739671 0.994391 53 0 0 18.735505 0.3125 0.02 -0.280465 22 10 602 226 60 60 0 0 AA 3.908443 13 0 344 0 KEEP + Col24a1 NO B[a]P_1 chr3 146245551 146245551 T C exonic Dnase2b nonsynonymous SNV NM_019957:c.A752G:p.K251R exonic Dnase2b nonsynonymous SNV uc008rrn.2:c.A752G:p.K251R exonic ENSMUSG00000028185 nonsynonymous SNV ENSMUST00000029836:c.A752G:p.K251R 3qH2 NA NA chr3 146245551 AACxTTT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 89 0 0 25.863486 0.261905 0.02 -0.376962 31 11 837 311 60 60 0 0 TT 10.828651 36 0 1007 0 KEEP - Dnase2b NO B[a]P_1 chr3 146293450 146293450 T A intronic Uox NA NA intronic Uox NA NA intronic ENSMUSG00000028186 NA NA 3qH2 NA NA chr3 146293450 CATxGTA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 27 0 0 12.122876 0.384615 0.02 -0.113995 8 5 227 135 60 60 0 0 TT 3.908965 13 0 349 0 KEEP + Uox NO B[a]P_1 chr3 14871571 14871571 C G exonic Car3 nonsynonymous SNV NM_007606:c.C693G:p.S231R exonic Car3 nonsynonymous SNV uc008oqs.1:c.C693G:p.S231R exonic ENSMUSG00000027559 nonsynonymous SNV ENSMUST00000029076:c.C693G:p.S231R 3qA1 NA NA chr3 14871571 CAGxGCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.716861 0.717315 0.999366 61 0 0 15.752305 0.225806 0.02 -0.271734 24 7 621 196 60 60 0 0 CC 5.111042 17 0 448 0 KEEP + Car3 NO B[a]P_1 chr3 157206123 157206123 T C exonic Zranb2 nonsynonymous SNV NM_017381:c.T685C:p.S229P exonic Zranb2 nonsynonymous SNV uc008rvf.1:c.T478C:p.S160P exonic ENSMUSG00000028180 nonsynonymous SNV ENSMUST00000029831:c.T574C:p.S192P 3qH4 NA NA chr3 157206123 AGGxCCC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 241 2 0 25.049768 0.15 0.02 1.092107 68 12 1851 340 60 60 0 0 TT 34.261176 121 2 3204 18 KEEP + Zranb2 NO B[a]P_1 chr3 157838170 157838170 A T exonic Lrrc7 nonsynonymous SNV NM_001081358:c.T1592A:p.L531Q exonic Lrrc7 nonsynonymous SNV uc008rvw.1:c.T1592A:p.L531Q exonic ENSMUSG00000028176 nonsynonymous SNV ENSMUST00000029826:c.T1577A:p.L526Q 3qH4 NA NA chr3 157838170 GCCxGCT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 139 0 0 52.888111 0.267442 0.02 0.941113 63 23 1787 636 60 60 0 0 AA 12.031451 40 0 1114 0 KEEP - Lrrc7 NO B[a]P_1 chr3 19571596 19571596 C G exonic Trim55 nonsynonymous SNV NM_001081281:c.C927G:p.N309K exonic Trim55 nonsynonymous SNV uc008orw.1:c.C927G:p.N309K exonic ENSMUSG00000060913 nonsynonymous SNV ENSMUST00000029139:c.C927G:p.N309K 3qA2 NA NA chr3 19571596 CAAxTTC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 79 0 0 42.315617 0.435897 0.02 -0.350469 22 17 591 458 60 60 0 0 CC 10.52791 35 0 983 0 KEEP + Trim55 NO B[a]P_1 chr3 26823222 26823222 A T exonic Spata16 stopgain SNV NM_027583:c.A1414T:p.R472X exonic Spata16 stopgain SNV uc008otf.2:c.A1414T:p.R472X exonic ENSMUSG00000039335 stopgain SNV ENSMUST00000047005:c.A1414T:p.R472X 3qA3 NA NA chr3 26823222 CAGxGAG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 83 0 0 25.005228 0.25 0.02 -0.385841 33 11 926 305 60 60 0 0 AA 9.625198 32 0 891 0 KEEP + Spata16 NO B[a]P_1 chr3 32348455 32348455 G T exonic Pik3ca nonsynonymous SNV NM_008839:c.G1675T:p.V559L exonic Pik3ca nonsynonymous SNV uc008owd.2:c.G1675T:p.V559L exonic ENSMUSG00000027665 nonsynonymous SNV ENSMUST00000029201:c.G1675T:p.V559L 3qA3 NA NA chr3 32348455 TGCxTAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 162 2 0 37.931468 0.266667 0.02 1.267705 44 16 1075 454 60 60 0 0 GG 22.217518 74 0 1792 0 KEEP + Pik3ca YES B[a]P_1 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 60 1 0 13.281218 0.24 0.02 -0.227986 19 6 527 164 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO B[a]P_1 chr3 34549684 34549684 G A exonic Sox2 nonsynonymous SNV NM_011443:c.G347A:p.R116Q exonic Sox2 nonsynonymous SNV uc008oxu.1:c.G347A:p.R116Q exonic ENSMUSG00000074637 nonsynonymous SNV ENSMUST00000099151:c.G347A:p.R116Q 3qA3 NA NA chr3 34549684 GGCxGAA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 128 0 0 28.184889 0.209677 0.02 1.151802 49 13 1276 358 60 60 0 0 GG 17.136459 57 0 1518 0 KEEP + Sox2 NO B[a]P_1 chr3 51340541 51340541 C A exonic Setd7 stopgain SNV NM_080793:c.G409T:p.G137X exonic Setd7 stopgain SNV uc008peb.1:c.G409T:p.G137X exonic ENSMUSG00000037111 stopgain SNV ENSMUST00000037141:c.G409T:p.G137X 3qC NA NA chr3 51340541 CTCxATC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 141 0 0 86.894538 0.478261 0.02 1.081382 36 33 1016 919 60 60 0 0 CC 20.148293 67 0 1907 0 KEEP - Setd7 YES B[a]P_1 chr3 53455982 53455982 C G exonic Frem2 synonymous SNV NM_172862:c.G5025C:p.V1675V exonic Frem2 synonymous SNV uc008pey.1:c.G5025C:p.V1675V exonic ENSMUSG00000037016 synonymous SNV ENSMUST00000091137:c.G5025C:p.V1675V 3qC NA NA chr3 53455982 CTCxACT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 96 0 0 16.926991 0.195652 0.02 -0.403309 37 9 1032 225 60 60 0 0 CC 11.430212 38 0 1071 0 KEEP - Frem2 NO B[a]P_1 chr3 5412972 5412972 G A exonic Zfhx4 nonsynonymous SNV NM_030708:c.G10571A:p.C3524Y exonic Zfhx4 nonsynonymous SNV uc008ooa.1:c.G10571A:p.C3524Y exonic ENSMUSG00000025255 nonsynonymous SNV ENSMUST00000026284:c.G10571A:p.C3524Y 3qA1 NA NA chr3 5412972 TGTxCAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 121 0 0 28.704314 0.295455 0.02 -0.385796 31 13 861 341 60 60 0 0 GG 18.047511 60 0 1682 0 KEEP + Zfhx4 NO B[a]P_1 chr3 57455478 57455478 C A intronic Commd2 NA NA intronic Commd2 NA NA intronic ENSMUSG00000036513 NA NA 3qD NA NA chr3 57455478 CCCxGCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 129 2 0 45.706705 0.316667 0.02 1.250287 41 19 958 529 60 60 0 0 CC 16.512418 55 0 1283 0 KEEP - Commd2 YES B[a]P_1 chr3 58219678 58219678 C G exonic Tsc22d2 nonsynonymous SNV NM_001081229:c.C68G:p.A23G exonic Tsc22d2 nonsynonymous SNV uc008php.1:c.C68G:p.A23G exonic ENSMUSG00000027806 nonsynonymous SNV ENSMUST00000099090:c.C68G:p.A23G 3qD NA NA chr3 58219678 TGGxCAC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 164 2 0 65.422107 0.306818 0.02 1.021871 61 27 1691 761 60 60 0 0 CC 15.638199 52 0 1426 0 KEEP + Tsc22d2 NO B[a]P_1 chr3 58983418 58983418 T A exonic Gpr87 nonsynonymous SNV NM_032399:c.A590T:p.K197I exonic Gpr87 nonsynonymous SNV uc012cpy.1:c.A590T:p.K197I exonic ENSMUSG00000051431 nonsynonymous SNV ENSMUST00000056898:c.A590T:p.K197I 3qD NA NA chr3 58983418 CTTxTGA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 127 1 0 16.427416 0.134328 0.02 0.912531 58 9 1592 236 60 60 0 0 TT 14.437877 48 0 1337 0 KEEP + Gpr87 NO B[a]P_1 chr3 59066214 59066214 G T exonic Med12l nonsynonymous SNV NM_177855:c.G4876T:p.G1626W exonic Med12l nonsynonymous SNV uc008pii.2:c.G4876T:p.G1626W exonic ENSMUSG00000056476 nonsynonymous SNV ENSMUST00000040325:c.G4771T:p.G1591W 3qD NA NA chr3 59066214 CCCxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 80 0 0 29.036617 0.315789 0.02 -0.333097 26 12 673 336 60 60 0 0 GG 9.321012 31 0 833 0 KEEP + Med12l YES B[a]P_1 chr3 62281225 62281225 T A exonic Dhx36 nonsynonymous SNV NM_028136:c.A2251T:p.T751S exonic Dhx36 nonsynonymous SNV uc008pjn.2:c.A2251T:p.T751S exonic ENSMUSG00000027770 nonsynonymous SNV ENSMUST00000029336:c.A2251T:p.T751S 3qE1 NA NA chr3 62281225 CTGxCAG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 236 3 0 25.11244 0.138298 0.02 0.870991 81 13 2226 353 60 60 0 0 TT 29.474754 98 0 2687 0 KEEP - Dhx36 NO B[a]P_1 chr3 63967647 63967647 C T intergenic "Vmn2r2(dist=26245),Vmn2r3(dist=95236)" NA NA intergenic "Vmn2r2(dist=26245),Vmn2r3(dist=95236)" NA NA intergenic "ENSMUSG00000043897(dist=26245),ENSMUSG00000091572(dist=95236)" NA NA 3qE1 NA NA chr3 63967647 GGCxCCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 135 14 20 19.963396 0.347826 0.02 -0.210455 15 8 418 226 60 60 0 0 CC 29.774834 99 0 2766 0 KEEP NA Vmn2r2 NO B[a]P_1 chr3 75061967 75061967 G C exonic Serpini2 nonsynonymous SNV NM_026460:c.C626G:p.S209C exonic Serpini2 nonsynonymous SNV uc008pna.1:c.C626G:p.S209C exonic ENSMUSG00000034139 nonsynonymous SNV ENSMUST00000039047:c.C626G:p.S209C 3qE3 NA NA chr3 75061967 GTAxAGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 122 2 0 6.916369 0.102564 0.02 -0.341987 35 4 983 106 60 60 0 0 GG 17.749027 59 0 1694 0 KEEP - Serpini2 NO B[a]P_1 chr3 88347284 88347284 G A exonic Rab25 stopgain SNV NM_016899:c.C391T:p.Q131X exonic Rab25 stopgain SNV uc008pvn.1:c.C391T:p.Q131X exonic ENSMUSG00000008601 stopgain SNV ENSMUST00000008745:c.C391T:p.Q131X 3qF1 NA NA chr3 88347284 CCTxGCT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909006 0.909069 0.999931 79 0 0 42.476488 0.395349 0.02 -0.37706 26 17 725 469 60 60 0 0 GG 7.500236 25 0 690 0 KEEP - Rab25 NO B[a]P_1 chr3 88433857 88433857 A G intronic Arhgef2 NA NA intronic Arhgef2 NA NA intronic ENSMUSG00000028059 NA NA 3qF1 NA NA chr3 88433857 GTAxGTT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 176 0 0 8.593554 0.060241 0.02 0.967377 78 5 2195 144 60 60 0 0 AA 20.455103 68 0 1920 0 KEEP + Arhgef2 NO B[a]P_1 chr3 89161727 89161727 C G exonic Dcst1 nonsynonymous SNV NM_029974:c.G737C:p.S246T exonic Dcst1 nonsynonymous SNV uc012csl.1:c.G290C:p.S97T exonic ENSMUSG00000042672 nonsynonymous SNV ENSMUST00000070820:c.G737C:p.S246T 3qF1 NA NA chr3 89161727 GTGxTTT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 155 2 0 7.611124 0.063291 0.02 0.895829 74 5 2080 133 60 60 0 0 CC 16.2408 54 0 1505 0 KEEP - Dcst1 NO B[a]P_1 chr3 90262217 90262217 G C intronic Npr1 NA NA intronic Npr1 NA NA intronic ENSMUSG00000027931 NA NA 3qF1 NA NA chr3 90262217 CTGxCAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 180 0 0 38.390023 0.226667 0.02 1.037994 58 17 1595 477 60 60 0 0 GG 25.866422 86 0 2370 0 KEEP - Npr1 NO B[a]P_1 chr3 93630868 93630868 T G exonic Tdpoz3 nonsynonymous SNV NM_207271:c.T927G:p.S309R exonic Tdpoz3 nonsynonymous SNV uc008qfo.1:c.T927G:p.S309R exonic ENSMUSG00000058005 nonsynonymous SNV ENSMUST00000081780:c.T927G:p.S309R 3qF2.1 "Score=0.96949;Name=No.81808,chr3:93986025" NA chr3 93630868 GAGxCAG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 293 1 21 60.295178 0.333333 0.02 0.835882 50 25 1395 691 60 60 0 0 TT 46.659625 159 1 4302 10 KEEP + Tdpoz3 NO B[a]P_1 chr3 94046710 94046710 G T intergenic "Gm10696(dist=64595),Them4(dist=67344)" NA NA intergenic "Gm10696(dist=64595),Them4(dist=67344)" NA NA ncRNA_exonic ENSMUSG00000089893 NA NA 3qF2.1 "Score=0.98925;Name=No.81806,chr3:93577031" NA chr3 94046710 ATGxAGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 368 1 117 26.145427 0.180556 0.02 0.965982 59 13 1663 347 57 57 0 0 GG 57.9483 193 0 5449 0 KEEP NA Gm10696 YES B[a]P_1 chr3 94868347 94868347 C G exonic Pip5k1a synonymous SNV NM_008847:c.G1368C:p.R456R exonic Pip5k1a synonymous SNV uc008qhx.1:c.G1368C:p.R456R exonic ENSMUSG00000028126 synonymous SNV ENSMUST00000107235:c.G786C:p.R262R 3qF2.1 NA NA chr3 94868347 TCGxCGA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 133 0 0 8.508551 0.072464 0.02 1.090177 64 5 1782 139 60 60 0 0 CC 14.72568 49 0 1324 0 KEEP - Pip5k1a NO B[a]P_1 chr3 95975037 95975037 C G exonic Mtmr11 nonsynonymous SNV NM_181409:c.C1985G:p.A662G exonic Mtmr11 nonsynonymous SNV uc008qmd.2:c.C1985G:p.A662G exonic ENSMUSG00000045934 nonsynonymous SNV ENSMUST00000054356:c.C1985G:p.A662G 3qF2.1 NA NA chr3 95975037 CTGxCCT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 92 0 0 15.85057 0.225806 0.02 -0.271854 24 7 681 197 60 60 0 0 CC 12.632895 42 0 1166 0 KEEP + Mtmr11 NO B[a]P_1 chr3 95989396 95989396 G T exonic Sv2a nonsynonymous SNV NM_022030:c.G488T:p.R163L exonic Sv2a nonsynonymous SNV uc008qmf.1:c.G488T:p.R163L exonic ENSMUSG00000038486 nonsynonymous SNV ENSMUST00000035371:c.G488T:p.R163L 3qF2.1 NA NA chr3 95989396 GCCxCTT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 132 0 0 43.25564 0.315789 0.02 1.29409 39 18 962 501 60 60 0 0 GG 14.98843 50 0 1225 0 KEEP + Sv2a YES B[a]P_1 chr3 97527999 97527999 A C intronic Pde4dip NA NA intronic Pde4dip NA NA intronic ENSMUSG00000038170 NA NA 3qF2.2 NA NA chr3 97527999 GAAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 91 0 0 16.604175 0.25 0.02 -0.315606 27 9 765 211 60 60 0 0 AA 10.82802 36 0 999 0 KEEP - Pde4dip NO B[a]P_1 chr3 97597075 97597075 T A exonic Pde4dip nonsynonymous SNV NM_001110163:c.A511T:p.R171W exonic Pde4dip nonsynonymous SNV uc012cue.1:c.A511T:p.R171W exonic ENSMUSG00000038170 nonsynonymous SNV ENSMUST00000090750:c.A871T:p.R291W 3qF2.2 NA NA chr3 97597075 CCCxCTG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 44 0 0 20.609692 0.470588 0.02 -0.149072 9 8 256 219 60 60 0 0 TT 6.316606 21 0 586 0 KEEP - Pde4dip NO B[a]P_1 chr4 100082361 100082361 A G exonic Ror1 nonsynonymous SNV NM_013845:c.A653G:p.K218R exonic Ror1 nonsynonymous SNV uc008tvd.1:c.A653G:p.K218R exonic ENSMUSG00000035305 nonsynonymous SNV ENSMUST00000039630:c.A653G:p.K218R 4qC6 NA NA chr4 100082361 ATAxGTG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 179 1 0 15.519659 0.108108 0.02 1.046308 66 8 1849 227 60 60 0 0 AA 21.630756 72 0 1988 0 KEEP + Ror1 NO B[a]P_1 chr4 101487788 101487788 T C exonic Lepr nonsynonymous SNV NM_146146:c.T3403C:p.F1135L exonic Lepr nonsynonymous SNV uc008tvz.2:c.T3403C:p.F1135L exonic ENSMUSG00000057722 nonsynonymous SNV ENSMUST00000037552:c.T3403C:p.F1135L 4qC6 NA NA chr4 101487788 AACxTTG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 74 1 0 8.01993 0.121212 0.02 -0.289362 29 4 799 114 60 60 0 0 TT 10.527775 35 0 980 0 KEEP + Lepr NO B[a]P_1 chr4 107687552 107687552 C G UTR3 Podn NA NA UTR3 Podn NA NA exonic ENSMUSG00000028600 nonsynonymous SNV ENSMUST00000146851:c.G1098C:p.W366C 4qC7 NA NA chr4 107687552 CTGxCAC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990952 0.990964 0.999988 104 0 0 34.963569 0.241935 0.02 1.249909 47 15 1282 427 60 60 0 0 CC 8.118886 27 0 729 0 KEEP - Podn NO B[a]P_1 chr4 109349612 109349612 C G UTR5 Faf1 NA NA UTR5 Faf1 NA NA UTR5 ENSMUSG00000010517 NA NA 4qC7 NA NA chr4 109349612 GAGxCGC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 121 2 0 12.654756 0.146341 0.02 -0.35953 35 6 972 172 60 60 0 0 CC 16.755691 56 0 1472 0 KEEP + Faf1 NO B[a]P_1 chr4 113468131 113468131 T G exonic Skint5 nonsynonymous SNV NM_001167876:c.A1858C:p.S620R exonic Skint5 nonsynonymous SNV uc009vcz.1:c.A1858C:p.S620R exonic ENSMUSG00000078598 nonsynonymous SNV ENSMUST00000171627:c.A619C:p.S207R 4qD1 NA NA chr4 113468131 CACxGGA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 265 3 0 10.081782 0.12766 0.02 0.887134 41 6 1156 150 60 29 0 0 TT 43.90196 146 0 4035 0 KEEP - Skint5 NO B[a]P_1 chr4 114766056 114766056 C A intronic Pdzk1ip1 NA NA intronic Pdzk1ip1 NA NA intronic ENSMUSG00000028716 NA NA 4qD1 NA NA chr4 114766056 ACCxAAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 86 0 0 12.451492 0.193548 0.02 -0.271835 25 6 701 162 60 60 0 0 CC 13.232717 44 0 1229 0 KEEP + Pdzk1ip1 YES B[a]P_1 chr4 115980024 115980024 A C exonic Mast2 stopgain SNV NM_008641:c.T4781G:p.L1594X exonic Mast2 stopgain SNV uc008ugo.1:c.T4781G:p.L1594X exonic ENSMUSG00000003810 stopgain SNV ENSMUST00000003908:c.T4598G:p.L1533X 4qD1 NA NA chr4 115980024 TGTxAGG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 129 0 0 50.599195 0.295775 0.02 1.072711 50 21 1343 593 60 60 0 0 AA 13.832949 46 0 1238 0 KEEP - Mast2 NO B[a]P_1 chr4 11633374 11633374 G T exonic Gem nonsynonymous SNV NM_010276:c.G314T:p.C105F exonic Gem nonsynonymous SNV uc008rzw.2:c.G314T:p.C105F exonic ENSMUSG00000028214 nonsynonymous SNV ENSMUST00000029868:c.G314T:p.C105F 4qA1 NA NA chr4 11633374 ACTxTGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 99 3 0 37.363446 0.365854 0.02 -0.359499 26 15 702 419 60 60 0 0 GG 12.613108 42 0 1156 0 KEEP + Gem YES B[a]P_1 chr4 117223256 117223256 G T exonic Eri3 nonsynonymous SNV NM_080469:c.G56T:p.G19V exonic Eri3 nonsynonymous SNV uc008uis.1:c.G56T:p.G19V exonic ENSMUSG00000033423 nonsynonymous SNV ENSMUST00000037127:c.G56T:p.G19V 4qD2.1 NA NA chr4 117223256 GAGxGCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.850137 0.851984 0.997832 66 0 0 25.276481 0.297297 0.02 -0.332871 26 11 713 298 60 60 0 0 GG 4.791267 16 0 413 0 KEEP + Eri3 YES B[a]P_1 chr4 117576084 117576084 C A exonic Ipo13 synonymous SNV NM_146152:c.G1803T:p.L601L exonic Ipo13 synonymous SNV uc008ujg.1:c.G1803T:p.L601L exonic ENSMUSG00000033365 synonymous SNV ENSMUST00000036156:c.G1803T:p.L601L 4qD2.1 NA NA chr4 117576084 CTGxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 0.999999 107 0 0 43.723285 0.321429 0.02 1.195665 38 18 1028 504 60 60 0 0 CC 10.806538 36 0 967 0 KEEP - Ipo13 YES B[a]P_1 chr4 118055920 118055920 C A exonic Szt2 nonsynonymous SNV NM_198170:c.G5435T:p.G1812V exonic Szt2 nonsynonymous SNV uc012djw.1:c.G5435T:p.G1812V exonic ENSMUSG00000033253 nonsynonymous SNV ENSMUST00000048347:c.G326T:p.G109V 4qD2.1 NA NA chr4 118055920 TCCxCTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 167 0 0 42.208912 0.25 0.02 1.028791 57 19 1608 517 60 60 0 0 CC 19.247605 64 0 1782 0 KEEP - Szt2 YES B[a]P_1 chr4 118589608 118589608 A G exonic Olfr1329 nonsynonymous SNV NM_001011870:c.T463C:p.F155L exonic Olfr1329 nonsynonymous SNV uc008ula.1:c.T463C:p.F155L exonic ENSMUSG00000073767 nonsynonymous SNV ENSMUST00000071979:c.T463C:p.F155L 4qD2.1 "Score=0.932485;Name=No.86363,chr4:118454252" NA chr4 118589608 AAAxGAA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 315 19 1 25.618674 0.127451 0.02 2.269927 89 13 2462 363 60 60 0 0 AA 40.036529 141 1 3941 22 KEEP - Olfr1329 NO B[a]P_1 chr4 11888469 11888469 C A exonic Pdp1 nonsynonymous SNV NM_001033453:c.G868T:p.G290C exonic Pdp1 nonsynonymous SNV uc008rzz.1:c.G976T:p.G326C exonic ENSMUSG00000049225 nonsynonymous SNV ENSMUST00000056050:c.G868T:p.G290C 4qA1 NA NA chr4 11888469 CACxAGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 96 0 0 37.563365 0.333333 0.02 -0.420882 32 16 896 432 60 60 0 0 CC 11.1296 37 0 1039 0 KEEP - Pdp1 YES B[a]P_1 chr4 120370638 120370638 G T exonic Kcnq4 nonsynonymous SNV NM_001081142:c.C1952A:p.A651D exonic Kcnq4 nonsynonymous SNV uc008unm.1:c.C1952A:p.A651D exonic ENSMUSG00000028631 nonsynonymous SNV ENSMUST00000030376:c.C1952A:p.A651D 4qD2.2 NA NA chr4 120370638 CTGxCCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 54 0 0 13.246916 0.214286 0.02 -0.245532 22 6 614 167 60 60 0 0 GG 6.015394 20 0 551 0 KEEP - Kcnq4 YES B[a]P_1 chr4 120647015 120647015 C A exonic Smap2 synonymous SNV NM_133716:c.G654T:p.P218P exonic Smap2 synonymous SNV uc008unw.2:c.G654T:p.P218P exonic ENSMUSG00000032870 synonymous SNV ENSMUST00000043200:c.G654T:p.P218P 4qD2.2 NA NA chr4 120647015 GGAxGGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 76 0 0 18.584722 0.333333 0.02 -0.210332 16 8 390 214 60 60 0 0 CC 11.121292 37 0 949 0 KEEP - Smap2 YES B[a]P_1 chr4 120725033 120725033 A C exonic Col9a2 nonsynonymous SNV NM_007741:c.A1283C:p.K428T exonic Col9a2 nonsynonymous SNV uc008unx.2:c.A1283C:p.K428T exonic ENSMUSG00000028626 nonsynonymous SNV ENSMUST00000030372:c.A1283C:p.K428T 4qD2.2 NA NA chr4 120725033 ATAxGGT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 93 0 0 15.042636 0.190476 0.02 -0.377003 34 8 940 201 60 60 0 0 AA 11.728464 39 0 1072 0 KEEP + Col9a2 NO B[a]P_1 chr4 124804045 124804045 C G exonic Zc3h12a nonsynonymous SNV NM_153159:c.G248C:p.G83A exonic Zc3h12a nonsynonymous SNV uc008urx.2:c.G248C:p.G83A exonic ENSMUSG00000042677 nonsynonymous SNV ENSMUST00000036188:c.G248C:p.G83A 4qD2.2 NA NA chr4 124804045 TCCxCTA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 134 0 0 27.116094 0.22807 0.02 1.097563 44 13 1236 342 60 60 0 0 CC 15.94241 53 0 1488 0 KEEP - Zc3h12a NO B[a]P_1 chr4 126237468 126237468 A G exonic Clspn nonsynonymous SNV NM_175554:c.A439G:p.R147G exonic Clspn nonsynonymous SNV uc008utl.2:c.A439G:p.R147G exonic ENSMUSG00000042489 nonsynonymous SNV ENSMUST00000048391:c.A439G:p.R147G 4qD2.2 NA NA chr4 126237468 GGCxGAA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 83 0 0 16.230726 0.258065 0.02 -0.271757 23 8 643 201 60 60 0 0 AA 11.430284 38 0 1064 0 KEEP + Clspn NO B[a]P_1 chr4 126559861 126559861 A G intronic Zmym4 NA NA intronic Zmym4 NA NA intronic ENSMUSG00000042446 NA NA 4qD2.2 NA NA chr4 126559861 GTGxGAA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 87 0 0 7.322998 0.097561 0.02 -0.35955 37 4 1052 111 60 60 0 0 AA 12.607453 42 0 1159 0 KEEP - Zmym4 NO B[a]P_1 chr4 128154604 128154604 A C exonic Csmd2 nonsynonymous SNV NM_001281955:c.A5740C:p.T1914P exonic Csmd2 nonsynonymous SNV uc008uvb.1:c.A2092C:p.T698P exonic ENSMUSG00000028804 nonsynonymous SNV ENSMUST00000074081:c.A2413C:p.T805P 4qD2.2 NA NA chr4 128154604 GGAxCAA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 149 1 0 10.129826 0.09375 0.02 1.036181 58 6 1583 159 60 60 0 0 AA 19.850112 66 0 1808 0 KEEP + Csmd2 NO B[a]P_1 chr4 132302530 132302530 C A exonic Smpdl3b synonymous SNV NM_133888:c.G138T:p.P46P exonic Smpdl3b synonymous SNV uc008vbs.1:c.G138T:p.P46P exonic ENSMUSG00000028885 synonymous SNV ENSMUST00000030709:c.G138T:p.P46P 4qD2.3 NA NA chr4 132302530 CGAxGGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 208 0 0 69.065391 0.318182 0.02 1.022248 60 28 1486 796 60 60 0 0 CC 25.779331 86 0 2116 0 KEEP - Smpdl3b YES B[a]P_1 chr4 132345713 132345713 G T exonic Themis2 synonymous SNV NM_001033308:c.C390A:p.L130L exonic BC013712 synonymous SNV uc008vbv.1:c.C390A:p.L130L exonic ENSMUSG00000037731 synonymous SNV ENSMUST00000045154:c.C390A:p.L130L 4qD2.3 NA NA chr4 132345713 TCTxAGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 84 0 0 10.9182 0.125 0.02 -0.420852 42 6 1180 159 60 60 0 0 GG 8.423309 28 0 804 0 KEEP - Themis2 YES B[a]P_1 chr4 133243599 133243599 T A intronic Arid1a NA NA intronic Arid1a NA NA intronic ENSMUSG00000007880 NA NA 4qD3 NA NA chr4 133243599 AGAxGCA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 51 0 0 17.217271 0.35 0.02 -0.175325 13 7 344 195 60 60 0 0 TT 6.917437 23 0 628 0 KEEP - Arid1a NO B[a]P_1 chr4 133901893 133901893 T C exonic Slc30a2 nonsynonymous SNV NM_001039677:c.T335C:p.I112T exonic Slc30a2 nonsynonymous SNV uc008vev.1:c.T95C:p.I32T exonic ENSMUSG00000028836 nonsynonymous SNV ENSMUST00000081094:c.T95C:p.I32T 4qD3 NA NA chr4 133901893 TCAxTAG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 84 0 0 12.086724 0.176471 0.02 -0.298106 28 6 756 161 60 60 0 0 TT 11.726568 39 0 1044 0 KEEP + Slc30a2 NO B[a]P_1 chr4 135062361 135062361 T A exonic Stpg1 nonsynonymous SNV NM_030189:c.T38A:p.L13Q exonic 4930555I21Rik nonsynonymous SNV uc008vgq.1:c.T38A:p.L13Q exonic ENSMUSG00000028801 nonsynonymous SNV ENSMUST00000063707:c.T38A:p.L13Q 4qD3 NA NA chr4 135062361 TCCxGAG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 75 0 0 22.058239 0.321429 0.02 -0.245549 19 9 542 254 60 60 0 0 TT 9.003675 30 0 820 0 KEEP + Stpg1 NO B[a]P_1 chr4 135330275 135330275 G A exonic Myom3 synonymous SNV NM_001085509:c.G870A:p.L290L exonic Myom3 synonymous SNV uc008vgy.1:c.G870A:p.L290L exonic ENSMUSG00000037139 synonymous SNV ENSMUST00000105854:c.G870A:p.L290L 4qD3 NA NA chr4 135330275 CCTxACC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 96 0 0 23.077972 0.285714 0.02 -0.306933 25 10 719 274 60 60 0 0 GG 13.528321 45 0 1281 0 KEEP + Myom3 NO B[a]P_1 chr4 135341882 135341882 A C exonic Myom3 nonsynonymous SNV NM_001085509:c.A1955C:p.N652T exonic Myom3 nonsynonymous SNV uc008vgy.1:c.A1955C:p.N652T exonic ENSMUSG00000037139 nonsynonymous SNV ENSMUST00000105854:c.A1955C:p.N652T 4qD3 NA NA chr4 135341882 ACAxCAA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.850137 0.851984 0.997832 63 0 0 18.865101 0.236842 0.02 -0.332999 29 9 787 236 60 60 0 0 AA 4.791983 16 0 419 0 KEEP + Myom3 NO B[a]P_1 chr4 135343920 135343920 T A exonic Myom3 nonsynonymous SNV NM_001085509:c.T2209A:p.F737I exonic Myom3 nonsynonymous SNV uc008vgy.1:c.T2209A:p.F737I exonic ENSMUSG00000037139 nonsynonymous SNV ENSMUST00000105854:c.T2209A:p.F737I 4qD3 NA NA chr4 135343920 TACxTCA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 100 0 0 21.80757 0.204082 0.02 -0.429694 39 10 1102 278 60 60 0 0 TT 11.430284 38 0 1064 0 KEEP + Myom3 NO B[a]P_1 chr4 136214974 136214974 G T exonic Ephb2 nonsynonymous SNV NM_010142:c.C2378A:p.T793K exonic Ephb2 nonsynonymous SNV uc008vil.1:c.C815A:p.T272K exonic ENSMUSG00000028664 nonsynonymous SNV ENSMUST00000059287:c.C2381A:p.T794K 4qD3 NA NA chr4 136214974 GCCxTCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 253 4 0 69.862735 0.243902 0.02 2.411229 93 30 2278 852 60 60 0 0 GG 25.850789 86 0 2224 0 KEEP - Ephb2 YES B[a]P_1 chr4 137064192 137064192 G T intronic Hspg2 NA NA intronic Hspg2 NA NA intronic ENSMUSG00000028763 NA NA 4qD3 NA NA chr4 137064192 CGTxCAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 100 0 0 25.783774 0.244444 0.02 -0.394516 34 11 928 314 60 60 0 0 GG 14.43843 48 0 1357 0 KEEP + Hspg2 YES B[a]P_1 chr4 137200392 137200392 G T exonic Usp48 synonymous SNV NM_130879:c.G2913T:p.T971T exonic Usp48 synonymous SNV uc008vjl.1:c.G2913T:p.T971T exonic ENSMUSG00000043411 synonymous SNV ENSMUST00000141628:c.G606T:p.T202T 4qD3 NA NA chr4 137200392 GACxTTA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717217 0.717315 0.999863 58 0 0 24.710566 0.322581 0.02 -0.271654 21 10 526 284 60 60 0 0 GG 6.00868 20 0 489 0 KEEP + Usp48 YES B[a]P_1 chr4 137273320 137273320 G C exonic Rap1gap nonsynonymous SNV NM_029563:c.G536C:p.R179T exonic Rap1gap nonsynonymous SNV uc008vjm.1:c.G536C:p.R179T exonic ENSMUSG00000041351 nonsynonymous SNV ENSMUST00000097837:c.G629C:p.R210T 4qD3 NA NA chr4 137273320 CCAxGCT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 161 0 0 13.04645 0.155172 0.02 0.610573 49 9 1389 196 60 60 0 0 GG 18.349025 61 0 1723 0 KEEP + Rap1gap NO B[a]P_1 chr4 137274936 137274936 C A exonic Rap1gap synonymous SNV NM_029563:c.C990A:p.P330P exonic Rap1gap synonymous SNV uc008vjm.1:c.C990A:p.P330P exonic ENSMUSG00000041351 synonymous SNV ENSMUST00000141306:c.C150A:p.P50P 4qD3 NA NA chr4 137274936 CCCxCTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 81 0 0 22.980189 0.285714 0.02 -0.315585 25 10 687 273 60 60 0 0 CC 8.121304 27 0 752 0 KEEP + Rap1gap YES B[a]P_1 chr4 137284176 137284176 C G exonic Rap1gap nonsynonymous SNV NM_001256218:c.C2051G:p.A684G exonic Rap1gap nonsynonymous SNV uc008vjo.1:c.C2051G:p.A684G exonic ENSMUSG00000041351 nonsynonymous SNV ENSMUST00000105835:c.C2051G:p.A684G 4qD3 NA NA chr4 137284176 AGGxCTC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 193 0 0 24.865704 0.155844 0.02 1.030703 65 12 1796 336 60 60 0 0 CC 26.446785 88 0 2407 0 KEEP + Rap1gap NO B[a]P_1 chr4 137830992 137830992 G T exonic Kif17 synonymous SNV NM_001190978:c.G591T:p.A197A exonic Kif17 synonymous SNV uc008vko.2:c.G291T:p.A97A exonic ENSMUSG00000028758 synonymous SNV ENSMUST00000030539:c.G591T:p.A197A 4qD3 NA NA chr4 137830992 TGCxGTT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926576 0.92664 0.999931 86 2 0 37.129228 0.333333 0.02 -0.394132 30 15 713 424 60 60 0 0 GG 7.49088 25 0 602 0 KEEP + Kif17 YES B[a]P_1 chr4 140556368 140556368 G T exonic Atp13a2 nonsynonymous SNV NM_001164366:c.G1291T:p.A431S exonic Atp13a2 nonsynonymous SNV uc012dnx.1:c.G1540T:p.A514S exonic ENSMUSG00000036622 nonsynonymous SNV ENSMUST00000168047:c.G1540T:p.A514S 4qD3 NA NA chr4 140556368 CTGxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 124 0 0 53.081585 0.354839 0.02 1.232355 40 22 1110 601 60 60 0 0 GG 15.337003 51 0 1417 0 KEEP + Atp13a2 YES B[a]P_1 chr4 140755694 140755694 G T exonic Fbxo42 nonsynonymous SNV NM_172518:c.G1369T:p.D457Y exonic Fbxo42 nonsynonymous SNV uc008vnz.2:c.G1369T:p.D457Y exonic ENSMUSG00000028920 nonsynonymous SNV ENSMUST00000030757:c.G1369T:p.D457Y 4qD3 NA NA chr4 140755694 TTAxACA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954489 0.954491 0.999998 90 0 0 22.719938 0.22449 0.02 -0.429677 38 11 1082 288 60 60 0 0 GG 10.227115 34 0 961 0 KEEP + Fbxo42 YES B[a]P_1 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.640941 0.641347 0.999366 59 0 0 15.303214 0.25 0.02 -0.245535 21 7 596 188 60 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 NO B[a]P_1 chr4 146902122 146902122 C G intergenic "Gm13152(dist=14593),Gm13154(dist=25264)" NA NA intergenic "Gm13152(dist=14593),Gm13154(dist=25264)" NA NA ncRNA_exonic ENSMUSG00000082599 NA NA 4qE1 NA NA chr4 146902122 CTTxAGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 620 0 0 22.734716 0.095238 0.02 2.267938 114 12 3247 342 60 60 0 0 CC 134.153028 446 0 12694 0 KEEP NA Gm13152 NO B[a]P_1 chr4 147264343 147264343 C A exonic Mfn2 nonsynonymous SNV NM_133201:c.G354T:p.W118C exonic Mfn2 nonsynonymous SNV uc008vtg.1:c.G354T:p.W118C exonic ENSMUSG00000029020 nonsynonymous SNV ENSMUST00000134172:c.G354T:p.W118C 4qE2 NA NA chr4 147264343 GTCxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 121 0 0 37.10295 0.274194 0.02 1.153549 45 17 1233 448 60 60 0 0 CC 15.039815 50 0 1399 0 KEEP - Mfn2 YES B[a]P_1 chr4 148511567 148511567 A G intronic Apitd1 NA NA intronic Apitd1 NA NA intronic ENSMUSG00000073705 NA NA 4qE2 NA NA chr4 148511567 GGGxCCC A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 354 0 0 36.024023 0.185567 0.02 0.837177 79 18 2079 476 60 60 0 0 AA 55.19852 184 0 4871 0 KEEP - Apitd1 NO B[a]P_1 chr4 148761184 148761184 A C intronic Ube4b NA NA intronic Ube4b NA NA intronic ENSMUSG00000028960 NA NA 4qE2 NA NA chr4 148761184 CCAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780953 0.78106 0.999863 60 0 0 7.022799 0.121212 0.02 -0.298081 29 4 799 104 60 60 0 0 AA 6.01531 20 0 551 0 KEEP - Ube4b NO B[a]P_1 chr4 151740420 151740420 C A intronic Chd5 NA NA intronic Chd5 NA NA intronic ENSMUSG00000005045 NA NA 4qE2 NA NA chr4 151740420 GCTxGCT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 284 0 0 110.773745 0.346154 0.02 2.251385 85 45 2033 1257 60 60 0 0 CC 40.145059 134 0 3103 0 KEEP + Chd5 YES B[a]P_1 chr4 151748574 151748574 G T intronic Chd5 NA NA intronic Chd5 NA NA intronic ENSMUSG00000005045 NA NA 4qE2 NA NA chr4 151748574 CTCxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 122 2 0 36.251764 0.306122 0.02 -0.429601 34 15 917 422 60 60 0 0 GG 14.731778 49 0 1300 0 KEEP + Chd5 YES B[a]P_1 chr4 151781286 151781286 G C exonic Kcnab2 stopgain SNV NM_001252654:c.C189G:p.Y63X exonic Kcnab2 stopgain SNV uc008wam.1:c.C189G:p.Y63X exonic ENSMUSG00000028931 stopgain SNV ENSMUST00000030768:c.C189G:p.Y63X 4qE2 NA NA chr4 151781286 ATCxTAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.934485 0.934492 0.999992 97 0 0 46.023436 0.391304 0.02 -0.403118 28 18 679 508 60 60 0 0 GG 12.005986 40 0 991 0 KEEP - Kcnab2 NO B[a]P_1 chr4 154271257 154271257 C A exonic Fam213b nonsynonymous SNV NM_025582:c.G471T:p.K157N exonic 2810405K02Rik nonsynonymous SNV uc008wch.1:c.G471T:p.K157N exonic ENSMUSG00000029059 nonsynonymous SNV ENSMUST00000030935:c.G471T:p.K157N 4qE2 NA NA chr4 154271257 TACxTTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.961521 0.967425 0.993897 92 0 0 26.944374 0.235294 0.02 1.239466 39 12 1107 333 60 60 0 0 CC 7.814256 26 0 730 0 KEEP - Fam213b YES B[a]P_1 chr4 154271259 154271259 T G exonic Fam213b nonsynonymous SNV NM_025582:c.A469C:p.K157Q exonic 2810405K02Rik nonsynonymous SNV uc008wch.1:c.A469C:p.K157Q exonic ENSMUSG00000029059 nonsynonymous SNV ENSMUST00000030935:c.A469C:p.K157Q 4qE2 NA NA chr4 154271259 CCTxGTC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963762 0.963774 0.999988 92 0 0 27.462303 0.24 0.02 1.248006 38 12 1056 337 60 60 0 0 TT 8.121003 27 0 747 0 KEEP - Fam213b NO B[a]P_1 chr4 154345538 154345538 G T exonic Pank4 nonsynonymous SNV NM_172990:c.G910T:p.G304W exonic Pank4 nonsynonymous SNV uc008wcl.2:c.G910T:p.G304W exonic ENSMUSG00000029056 nonsynonymous SNV ENSMUST00000030931:c.G910T:p.G304W 4qE2 NA NA chr4 154345538 ATCxGGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 58 0 0 11.483249 0.238095 0.02 -0.184017 16 5 396 141 60 60 0 0 GG 6.913783 23 0 600 0 KEEP + Pank4 YES B[a]P_1 chr4 154645671 154645671 A C exonic Prkcz nonsynonymous SNV NM_001039079:c.T555G:p.H185Q exonic Prkcz nonsynonymous SNV uc008wdc.1:c.T555G:p.H185Q exonic ENSMUSG00000029053 nonsynonymous SNV ENSMUST00000103178:c.T555G:p.H185Q 4qE2 NA NA chr4 154645671 CTCxTGC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 76 0 0 24.035621 0.277778 0.02 -0.315667 26 10 707 285 60 60 0 0 AA 9.021969 30 0 808 0 KEEP - Prkcz NO B[a]P_1 chr4 155236507 155236507 C G exonic Tas1r3 nonsynonymous SNV NM_031872:c.G749C:p.G250A exonic Tas1r3 nonsynonymous SNV uc008wff.1:c.G749C:p.G250A exonic ENSMUSG00000029072 nonsynonymous SNV ENSMUST00000030949:c.G749C:p.G250A 4qE2 NA NA chr4 155236507 TGGxCAC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 196 0 0 59.497821 0.247619 0.02 2.461758 79 26 2114 726 60 60 0 0 CC 21.956929 73 0 2029 0 KEEP - Tas1r3 NO B[a]P_1 chr4 155577932 155577932 G T ncRNA_exonic AW011738 NA NA ncRNA_exonic AW011738 NA NA UTR3 ENSMUSG00000078349 NA NA 4qE2 NA NA chr4 155577932 TGCxGGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 121 1 0 57.636538 0.353846 0.02 1.223771 42 23 1079 650 60 60 0 0 GG 14.728876 49 0 1276 0 KEEP + AW011738 YES B[a]P_1 chr4 20210034 20210034 G T exonic Nkain3 nonsynonymous SNV NM_172987:c.C445A:p.H149N exonic Nkain3 nonsynonymous SNV uc008scl.1:c.C445A:p.H149N exonic ENSMUSG00000055761 nonsynonymous SNV ENSMUST00000102998:c.C445A:p.H149N 4qA3 NA NA chr4 20210034 TGTxGAT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 109 0 0 29.04431 0.236364 0.02 1.195398 42 13 1174 359 60 60 0 0 GG 11.731201 39 0 1098 0 KEEP - Nkain3 YES B[a]P_1 chr4 21612830 21612830 G T exonic Prdm13 nonsynonymous SNV NM_001080771:c.C116A:p.P39H exonic Prdm13 nonsynonymous SNV uc008sco.1:c.C116A:p.P39H exonic ENSMUSG00000040478 nonsynonymous SNV ENSMUST00000095141:c.C116A:p.P39H 4qA3 NA NA chr4 21612830 CTGxGGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.610258 0.612407 0.99649 51 0 0 21.229877 0.333333 0.02 -0.236751 18 9 501 244 60 60 0 0 GG 4.510775 15 0 409 0 KEEP - Prdm13 YES B[a]P_1 chr4 24935423 24935423 G C exonic Gpr63 nonsynonymous SNV NM_030733:c.G999C:p.W333C exonic Gpr63 nonsynonymous SNV uc008see.1:c.G999C:p.W333C exonic ENSMUSG00000040372 nonsynonymous SNV ENSMUST00000038920:c.G999C:p.W333C 4qA3 NA NA chr4 24935423 CTGxGCC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 190 0 0 61.394918 0.297872 0.02 0.871053 66 28 1838 729 60 60 0 0 GG 22.251777 74 0 2060 0 KEEP + Gpr63 NO B[a]P_1 chr4 32064368 32064368 A C intronic Map3k7 NA NA intronic Map3k7 NA NA intronic ENSMUSG00000028284 NA NA 4qA5 NA NA chr4 32064368 GTAxGTC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 72 0 0 19.772713 0.333333 0.02 -0.289263 20 10 567 233 60 60 0 0 AA 9.324782 31 0 869 0 KEEP + Map3k7 NO B[a]P_1 chr4 32778723 32778723 G C exonic Mdn1 nonsynonymous SNV NM_001081392:c.G2987C:p.R996P exonic Mdn1 nonsynonymous SNV uc008sez.1:c.G2987C:p.R996P exonic ENSMUSG00000058006 nonsynonymous SNV ENSMUST00000071642:c.G2987C:p.R996P 4qA5 NA NA chr4 32778723 ACCxGGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 142 0 0 15.544182 0.190476 0.02 -0.368099 34 8 879 206 60 60 0 0 GG 22.517075 75 0 1874 0 KEEP + Mdn1 NO B[a]P_1 chr4 43006583 43006583 C A exonic Vcp synonymous SNV NM_009503:c.G420T:p.L140L exonic Vcp synonymous SNV uc008sor.2:c.G420T:p.L140L exonic ENSMUSG00000028452 synonymous SNV ENSMUST00000030164:c.G420T:p.L140L 4qA5 NA NA chr4 43006583 TTCxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 221 0 2 174.217552 0.652632 0.02 0.862238 33 62 912 1713 60 60 0 0 CC 27.975725 93 0 2651 0 KEEP - Vcp YES B[a]P_1 chr4 43511508 43511508 C A exonic Arhgef39 nonsynonymous SNV NM_001013377:c.G423T:p.R141S exonic E130306D19Rik nonsynonymous SNV uc008spz.2:c.G423T:p.R141S exonic ENSMUSG00000051517 nonsynonymous SNV ENSMUST00000054538:c.G423T:p.R141S 4qB1 NA NA chr4 43511508 ACCxCTA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 84 0 0 23.480235 0.30303 0.02 -0.289386 23 10 654 275 60 60 0 0 CC 12.283532 41 0 1105 0 KEEP - Arhgef39 YES B[a]P_1 chr4 43558517 43558517 G T exonic Tln1 synonymous SNV NM_011602:c.C2832A:p.A944A exonic Tln1 synonymous SNV uc008sqe.2:c.C2832A:p.A944A exonic ENSMUSG00000028465 synonymous SNV ENSMUST00000030187:c.C2832A:p.A944A 4qB1 NA NA chr4 43558517 AGAxGCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 151 0 0 7.927296 0.060976 0.02 0.959096 77 5 2122 137 60 60 0 0 GG 14.122147 47 0 1302 0 KEEP - Tln1 YES B[a]P_1 chr4 43997261 43997261 G C exonic Ccin synonymous SNV NM_001002787:c.G795C:p.P265P exonic Ccin synonymous SNV uc008srg.1:c.G795C:p.P265P exonic ENSMUSG00000070999 synonymous SNV ENSMUST00000095107:c.G795C:p.P265P 4qB1 NA NA chr4 43997261 CCCxTGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986152 0.986153 0.999999 103 0 0 57.886377 0.389831 0.02 1.277791 36 23 805 640 60 60 0 0 GG 10.51626 35 0 867 0 KEEP + Ccin NO B[a]P_1 chr4 45053530 45053530 C A exonic Fbxo10 nonsynonymous SNV NM_001024142:c.G2546T:p.R849L exonic Fbxo10 nonsynonymous SNV uc008ssf.2:c.G2546T:p.R849L exonic ENSMUSG00000048232 nonsynonymous SNV ENSMUST00000052236:c.G2546T:p.R849L 4qB1 NA NA chr4 45053530 CCCxGCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 118 1 0 26.603315 0.218182 0.02 1.213215 43 12 1108 334 60 60 0 0 CC 13.828839 46 0 1218 0 KEEP - Fbxo10 YES B[a]P_1 chr4 45297946 45297946 C G exonic Frmpd1 synonymous SNV NM_001081172:c.C3894G:p.P1298P exonic Frmpd1 synonymous SNV uc012ddm.1:c.C3894G:p.P1298P exonic ENSMUSG00000035615 synonymous SNV ENSMUST00000044773:c.C3894G:p.P1298P 4qB1 NA NA chr4 45297946 GCCxGCG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 146 2 0 49.437944 0.271605 0.02 0.985664 59 22 1388 595 60 60 0 0 CC 16.508648 55 0 1239 0 KEEP + Frmpd1 NO B[a]P_1 chr4 46148268 46148268 T A exonic Tstd2 synonymous SNV NM_173033:c.A156T:p.A52A exonic Tstd2 synonymous SNV uc008stg.1:c.A156T:p.A52A exonic ENSMUSG00000035495 synonymous SNV ENSMUST00000129929:c.A156T:p.A52A 4qB1 NA NA chr4 46148268 CTTxGCA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 92 0 0 25.073896 0.282051 0.02 -0.341971 28 11 773 299 60 60 0 0 TT 14.411356 48 0 1311 0 KEEP - Tstd2 NO B[a]P_1 chr4 53087219 53087219 A C exonic Abca1 nonsynonymous SNV NM_013454:c.T3335G:p.V1112G exonic Abca1 nonsynonymous SNV uc008swu.1:c.T3335G:p.V1112G exonic ENSMUSG00000015243 nonsynonymous SNV ENSMUST00000030010:c.T3335G:p.V1112G 4qB2 NA NA chr4 53087219 CCCxCAC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 292 2 0 75.663073 0.273504 0.02 2.561206 85 32 2305 902 60 60 0 1 AA 40.892304 136 0 3663 0 KEEP - Abca1 NO B[a]P_1 chr4 62121589 62121589 T A exonic Wdr31 nonsynonymous SNV NM_023597:c.A434T:p.H145L exonic Wdr31 nonsynonymous SNV uc008tet.1:c.A434T:p.H145L exonic ENSMUSG00000028391 nonsynonymous SNV ENSMUST00000030087:c.A434T:p.H145L 4qB3 NA NA chr4 62121589 GCAxGGC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 104 0 0 7.100487 0.081633 0.02 -0.429639 45 4 1222 112 60 60 0 0 TT 14.131708 47 0 1244 0 KEEP - Wdr31 NO B[a]P_1 chr4 63077155 63077155 C A exonic Whrn nonsynonymous SNV NM_001008792:c.G2434T:p.G812C exonic Whrn nonsynonymous SNV uc008tgg.1:c.G1351T:p.G451C exonic ENSMUSG00000039137 nonsynonymous SNV ENSMUST00000107386:c.G799T:p.G267C 4qC1 NA NA chr4 63077155 GGCxGGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.995318 0.995687 0.99963 104 0 0 60.698311 0.352941 0.02 1.099707 44 24 1021 684 60 60 0 0 CC 8.65734 29 0 671 0 KEEP - Whrn YES B[a]P_1 chr4 72513151 72513151 T G exonic Aldoart1 nonsynonymous SNV NM_001199270:c.A453C:p.Q151H exonic Aldoart1 nonsynonymous SNV uc008tin.1:c.A453C:p.Q151H exonic ENSMUSG00000059343 nonsynonymous SNV ENSMUST00000078617:c.A288C:p.Q96H 4qC3 "Score=0.918637;Name=No.89474,chrX:154586767" NA chr4 72513151 AACxTGG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 181 2 1 37.728305 0.210526 0.02 0.764868 75 20 2077 494 60 60 0 0 TT 20.45215 68 0 1881 0 KEEP - Aldoart1 NO B[a]P_1 chr4 82562595 82562595 C A exonic Frem1 nonsynonymous SNV NM_177863:c.G5551T:p.V1851L exonic "Frem1,qbrick" nonsynonymous SNV uc008tko.1:c.G190T:p.V64L exonic ENSMUSG00000059049 nonsynonymous SNV ENSMUST00000071708:c.G5551T:p.V1851L 4qC3 NA NA chr4 82562595 TCAxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 74 0 0 24.34545 0.357143 0.02 -0.245512 18 10 489 275 60 60 0 0 CC 11.428783 38 0 1041 0 KEEP - Frem1 YES B[a]P_1 chr4 83087865 83087865 C T exonic Snapc3 synonymous SNV NM_029949:c.C795T:p.D265D exonic Snapc3 synonymous SNV uc012dgp.1:c.C333T:p.D111D exonic ENSMUSG00000028483 synonymous SNV ENSMUST00000030206:c.C795T:p.D265D 4qC3 NA NA chr4 83087865 AGAxTTG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 71 0 0 6.473013 0.2 0.02 -0.263065 12 3 334 83 70 60 0 0 CC 12.006345 43 1 1204 8 KEEP + Snapc3 NO B[a]P_1 chr4 85988950 85988950 G T exonic Adamtsl1 nonsynonymous SNV NM_029967:c.G3517T:p.A1173S exonic Adamtsl1 nonsynonymous SNV uc008tls.3:c.G2071T:p.A691S exonic ENSMUSG00000066113 nonsynonymous SNV ENSMUST00000107178:c.G3517T:p.A1173S 4qC4 NA NA chr4 85988950 GTGxCTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 97 0 0 23.107847 0.289474 0.02 -0.332596 27 11 746 278 60 60 0 0 GG 12.932676 43 0 1187 0 KEEP + Adamtsl1 YES B[a]P_1 chr4 8793188 8793188 G T exonic Chd7 nonsynonymous SNV NM_001277149:c.G8347T:p.A2783S exonic Chd7 nonsynonymous SNV uc012daj.1:c.G1438T:p.A480S exonic ENSMUSG00000041235 nonsynonymous SNV ENSMUST00000170391:c.G2212T:p.A738S 4qA1 NA NA chr4 8793188 GCCxCAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934452 0.934492 0.999957 73 1 0 43.460382 0.369565 0.02 -0.403057 29 17 679 485 60 60 0 0 GG 7.808746 26 0 638 0 KEEP + Chd7 YES B[a]P_1 chr4 88481523 88481523 T G exonic Ifna5 nonsynonymous SNV NM_010505:c.T95G:p.L32R exonic Ifna5 nonsynonymous SNV uc008toa.1:c.T95G:p.L32R exonic ENSMUSG00000076440 nonsynonymous SNV ENSMUST00000102804:c.T95G:p.L32R 4qC4 NA NA chr4 88481523 ACCxCAG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1027 52 69 17.932371 0.047468 0.02 7.841051 301 15 8403 367 60 60 0 0 TT 155.963258 519 0 14269 0 KEEP + Ifna5 NO B[a]P_1 chr4 98601234 98601234 A C exonic Usp1 nonsynonymous SNV NM_146144:c.A2093C:p.N698T exonic Usp1 nonsynonymous SNV uc008tum.1:c.A2093C:p.N698T exonic ENSMUSG00000028560 nonsynonymous SNV ENSMUST00000030289:c.A2093C:p.N698T 4qC6 "Score=0.972733;Name=No.81945,chr3:8328975" NA chr4 98601234 GAAxTTC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 216 2 0 49.465782 0.275 0.02 0.993799 58 22 1567 594 60 60 0 0 AA 32.784394 109 0 3009 0 KEEP + Usp1 NO B[a]P_1 chr4 99651595 99651595 T G exonic Pgm2 nonsynonymous SNV NM_028132:c.T1270G:p.F424V exonic Pgm2 nonsynonymous SNV uc008tva.2:c.T1270G:p.F424V exonic ENSMUSG00000025791 nonsynonymous SNV ENSMUST00000058351:c.T1270G:p.F424V 4qC6 NA NA chr4 99651595 AACxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 39 0 0 9.881497 0.238095 0.02 -0.18412 16 5 446 125 60 60 0 0 TT 5.112289 17 0 460 0 KEEP + Pgm2 NO B[a]P_1 chr5 100818158 100818158 G A intronic Sec31a NA NA intronic Sec31a NA NA intronic ENSMUSG00000035325 NA NA 5qE4 NA NA chr5 100818158 AACxGAA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 94 0 0 19.895661 0.173077 0.02 1.328885 43 9 1153 260 60 60 0 0 GG 9.623375 32 0 873 0 KEEP - Sec31a NO B[a]P_1 chr5 103979864 103979864 G A exonic Ptpn13 nonsynonymous SNV NM_011204:c.G3383A:p.C1128Y exonic Ptpn13 nonsynonymous SNV uc008yjo.1:c.G71A:p.C24Y exonic ENSMUSG00000034573 nonsynonymous SNV ENSMUST00000048957:c.G3383A:p.C1128Y 5qE5 NA NA chr5 103979864 GATxCTT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 113 0 0 12.845875 0.127273 0.02 1.017775 48 7 1315 186 60 60 0 0 GG 12.010125 40 0 1086 0 KEEP + Ptpn13 NO B[a]P_1 chr5 104292158 104292158 C A exonic Klhl8 nonsynonymous SNV NM_178741:c.G1819T:p.V607L exonic Klhl8 nonsynonymous SNV uc008yjv.1:c.G1819T:p.V607L exonic ENSMUSG00000029312 nonsynonymous SNV ENSMUST00000112811:c.G1270T:p.V424L 5qE5 NA NA chr5 104292158 ACAxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.88345 0.888875 0.993897 76 2 0 35.579678 0.341463 0.02 -0.358296 27 14 626 403 60 60 0 0 CC 7.80681 26 0 605 0 KEEP - Klhl8 YES B[a]P_1 chr5 104948844 104948844 C G exonic BC005561 nonsynonymous SNV NM_001166581:c.C2212G:p.L738V exonic BC005561 nonsynonymous SNV uc008ykm.2:c.C2212G:p.L738V exonic ENSMUSG00000079065 nonsynonymous SNV ENSMUST00000096452:c.C2212G:p.L738V 5qE5 NA NA chr5 104948844 GATxTTG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981954 0.981955 0.999998 100 0 0 29.428047 0.232143 0.02 1.195358 43 13 1231 364 60 60 0 0 CC 10.228212 34 0 976 0 KEEP + BC005561 NO B[a]P_1 chr5 109602970 109602970 G A exonic Vmn2r13 synonymous SNV NM_001104624:c.C879T:p.I293I exonic Vmn2r13 synonymous SNV uc009vdk.1:c.C879T:p.I293I exonic ENSMUSG00000091635 synonymous SNV ENSMUST00000053253:c.C879T:p.I293I 5qF "Score=0.910389;Name=No.90948,chr5:109318569" NA chr5 109602970 TGTxATC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 459 50 0 11.092564 0.043716 0.02 3.178512 175 8 4924 215 60 60 0 0 GG 64.678499 215 0 6167 0 KEEP - Vmn2r13 NO B[a]P_1 chr5 109792923 109792923 T A exonic Vmn2r16 nonsynonymous SNV NM_001104627:c.T1976A:p.F659Y exonic Vmn2r16 nonsynonymous SNV uc009vdn.1:c.T1976A:p.F659Y exonic ENSMUSG00000092080 nonsynonymous SNV ENSMUST00000165180:c.T1976A:p.F659Y 5qF NA NA chr5 109792923 TATxTTT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 734 67 4 98.180331 0.156442 0.02 6.805953 275 51 7568 1352 60 60 0 0 TT 98.006914 326 0 8948 0 KEEP + Vmn2r16 NO B[a]P_1 chr5 111823699 111823699 C T intergenic "Pitpnb(dist=6320),Mn1(dist=23487)" NA NA ncRNA_exonic AK138421 NA NA intergenic "ENSMUSG00000050017(dist=6320),ENSMUSG00000070576(dist=22763)" NA NA 5qF NA NA chr5 111823699 GCTxCCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 164 0 0 32.863449 0.202703 0.02 1.14472 59 15 1648 419 60 60 0 0 CC 18.875473 63 0 1734 0 KEEP + Pitpnb NO B[a]P_1 chr5 111824174 111824174 C A intergenic "Pitpnb(dist=6795),Mn1(dist=23012)" NA NA ncRNA_exonic AK138421 NA NA intergenic "ENSMUSG00000050017(dist=6795),ENSMUSG00000070576(dist=22288)" NA NA 5qF NA NA chr5 111824174 GTGxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998695 0.998696 0.999999 132 0 0 37.179993 0.223684 0.02 1.029261 59 17 1607 466 60 60 0 0 CC 10.828542 36 0 1019 0 KEEP + Pitpnb YES B[a]P_1 chr5 112737100 112737100 G T exonic Tpst2 nonsynonymous SNV NM_009419:c.G484T:p.G162C exonic Tpst2 nonsynonymous SNV uc012ebg.1:c.G442T:p.G148C exonic ENSMUSG00000029344 nonsynonymous SNV ENSMUST00000071455:c.G484T:p.G162C 5qF NA NA chr5 112737100 CACxGCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 444 4 0 172.957992 0.267399 0.02 6.576981 200 73 4726 2069 60 60 0 0 GG 37.754749 126 0 3054 0 KEEP + Tpst2 YES B[a]P_1 chr5 112865426 112865426 C A exonic Sez6l nonsynonymous SNV NM_001253916:c.G2296T:p.V766L exonic Sez6l nonsynonymous SNV uc008yti.1:c.G961T:p.V321L exonic ENSMUSG00000058153 nonsynonymous SNV ENSMUST00000075387:c.G2296T:p.V766L 5qF NA NA chr5 112865426 CCAxTAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999675 0.999981 0.999693 147 0 0 63.713174 0.28 0.02 2.282951 72 28 1966 761 60 60 0 0 CC 9.61365 32 0 886 0 KEEP - Sez6l YES B[a]P_1 chr5 112904263 112904263 C A exonic Sez6l synonymous SNV NM_001253916:c.G441T:p.T147T exonic Sez6l synonymous SNV uc008ytj.1:c.G324T:p.T108T exonic ENSMUSG00000058153 synonymous SNV ENSMUST00000075387:c.G441T:p.T147T 5qF NA NA chr5 112904263 CGCxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 168 2 0 98.074755 0.34188 0.02 2.553374 77 40 1957 1116 60 60 0 0 CC 11.073541 37 0 926 0 KEEP - Sez6l YES B[a]P_1 chr5 113705126 113705126 T G exonic Sgsm1 nonsynonymous SNV NM_001162965:c.A1358C:p.K453T exonic Sgsm1 nonsynonymous SNV uc008yuc.2:c.A497C:p.K166T exonic ENSMUSG00000042216 nonsynonymous SNV ENSMUST00000057209:c.A497C:p.K166T 5qF NA NA chr5 113705126 GACxTCC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992923 0.992926 0.999998 114 4 0 25.582551 0.203125 0.02 1.134048 51 13 1434 334 60 60 0 0 TT 9.915726 33 0 897 0 KEEP - Sgsm1 NO B[a]P_1 chr5 113714413 113714413 C T exonic Sgsm1 nonsynonymous SNV NM_001162965:c.G555A:p.M185I exonic Sgsm1 nonsynonymous SNV uc008yud.2:c.G555A:p.M185I exonic ENSMUSG00000042216 nonsynonymous SNV ENSMUST00000048112:c.G555A:p.M185I 5qF NA NA chr5 113714413 CTTxATC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99899 0.998993 0.999998 122 0 0 38.101508 0.230769 0.02 1.011714 60 18 1654 478 60 60 0 0 CC 9.927841 33 0 956 0 KEEP - Sgsm1 NO B[a]P_1 chr5 118393301 118393301 C A exonic Nos1 nonsynonymous SNV NM_008712:c.C3558A:p.D1186E exonic Nos1 nonsynonymous SNV uc008zfy.1:c.C3558A:p.D1186E exonic ENSMUSG00000029361 nonsynonymous SNV ENSMUST00000111935:c.C3243A:p.D1081E 5qF NA NA chr5 118393301 CGAxGAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 135 2 0 65.099539 0.438596 0.02 1.294967 32 25 742 701 60 60 0 0 CC 15.325574 51 0 1276 0 KEEP + Nos1 YES B[a]P_1 chr5 118563746 118563746 G C exonic Fbxw8 nonsynonymous SNV NM_172721:c.C710G:p.T237S exonic Fbxw8 nonsynonymous SNV uc008zge.1:c.C710G:p.T237S exonic ENSMUSG00000032867 nonsynonymous SNV ENSMUST00000049474:c.C710G:p.T237S 5qF NA NA chr5 118563746 CGGxTGT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 155 0 0 51.227895 0.313433 0.02 1.206028 46 21 1274 593 60 60 0 0 GG 15.904815 53 0 1388 0 KEEP - Fbxw8 NO B[a]P_1 chr5 118563772 118563772 C A exonic Fbxw8 synonymous SNV NM_172721:c.G684T:p.T228T exonic Fbxw8 synonymous SNV uc008zge.1:c.G684T:p.T228T exonic ENSMUSG00000032867 synonymous SNV ENSMUST00000049474:c.G684T:p.T228T 5qF NA NA chr5 118563772 TGAxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 140 0 0 23.090159 0.161765 0.02 1.188916 57 11 1400 309 60 60 0 0 CC 14.116018 47 0 1121 0 KEEP - Fbxw8 YES B[a]P_1 chr5 121112349 121112349 C T intronic Rasal1 NA NA intronic Rasal1 NA NA intronic ENSMUSG00000029602 NA NA 5qF NA NA chr5 121112349 GAGxGCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 130 0 0 46.676727 0.273973 0.02 1.15595 53 20 1206 557 60 60 0 0 CC 11.713221 39 0 930 0 KEEP + Rasal1 NO B[a]P_1 chr5 121298397 121298397 T G exonic Oas1f nonsynonymous SNV NM_145153:c.T403G:p.F135V exonic Oas1f nonsynonymous SNV uc008zig.2:c.T403G:p.F135V exonic ENSMUSG00000053765 nonsynonymous SNV ENSMUST00000057814:c.T403G:p.F135V 5qF NA NA chr5 121298397 AGCxTCA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 331 1 0 25.575793 0.096045 0.02 3.435892 160 17 4451 417 60 60 0 0 TT 35.192606 117 0 3271 0 KEEP + Oas1f NO B[a]P_1 chr5 124530147 124530147 G T exonic Abcb9 synonymous SNV NM_019875:c.C1134A:p.A378A exonic Abcb9 synonymous SNV uc008zou.1:c.C1134A:p.A378A exonic ENSMUSG00000029408 synonymous SNV ENSMUST00000031354:c.C1134A:p.A378A 5qF NA NA chr5 124530147 GTTxGCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 240 0 0 19.610422 0.07971 0.02 2.181593 127 11 3510 310 60 60 0 0 GG 20.132726 67 0 1888 0 KEEP - Abcb9 YES B[a]P_1 chr5 125095544 125095544 G C intronic Atp6v0a2 NA NA intronic Atp6v0a2 NA NA intronic ENSMUSG00000038023 NA NA 5qF NA NA chr5 125095544 TTTxTAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899275 0.899314 0.999957 76 0 0 12.687233 0.142857 0.02 -0.368266 36 6 994 173 60 60 0 0 GG 7.820763 26 0 732 0 KEEP + Atp6v0a2 NO B[a]P_1 chr5 125254227 125254227 G A exonic Dnah10 nonsynonymous SNV NM_019536:c.G5260A:p.D1754N exonic Dnahc10 nonsynonymous SNV uc008zqp.2:c.G5260A:p.D1754N exonic ENSMUSG00000038011 nonsynonymous SNV ENSMUST00000058440:c.G5260A:p.D1754N 5qF NA NA chr5 125254227 GCCxATG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877585 0.877708 0.99986 67 0 0 17.128009 0.205128 0.02 -0.350623 31 8 823 219 60 60 0 0 GG 5.714905 19 0 535 0 KEEP + Dnah10 NO B[a]P_1 chr5 130688786 130688786 G T exonic Rabgef1 nonsynonymous SNV NM_019983:c.G1160T:p.G387V exonic Rabgef1 nonsynonymous SNV uc008zug.1:c.G1160T:p.G387V exonic ENSMUSG00000025340 nonsynonymous SNV ENSMUST00000026390:c.G1160T:p.G387V 5qG1.3 NA NA chr5 130688786 CTGxCCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 197 23 0 35.440488 0.178947 0.02 0.853476 78 17 2159 467 60 60 0 0 GG 24.925038 83 0 2243 0 KEEP + Rabgef1 YES B[a]P_1 chr5 136209483 136209483 C G exonic Por nonsynonymous SNV NM_008898:c.C1169G:p.A390G exonic Por nonsynonymous SNV uc008zyt.1:c.C1169G:p.A390G exonic ENSMUSG00000005514 nonsynonymous SNV ENSMUST00000005651:c.C1169G:p.A390G 5qG2 NA NA chr5 136209483 TGGxCCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 301 0 0 18.330475 0.066667 0.02 3.394034 154 11 4302 306 60 60 0 0 CC 21.531346 72 0 1917 0 KEEP + Por NO B[a]P_1 chr5 136328725 136328725 C T intronic Srrm3 NA NA ncRNA_intronic 2900083I11Rik NA NA intronic ENSMUSG00000039860 NA NA 5qG2 NA NA chr5 136328725 AAAxATC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739604 0.739671 0.999909 74 0 0 17.632052 0.258065 0.02 -0.280524 23 8 620 215 60 60 0 0 CC 7.218986 24 0 671 0 KEEP + Srrm3 NO B[a]P_1 chr5 136444119 136444119 G T exonic Srcrb4d synonymous SNV NM_001160366:c.C177A:p.L59L exonic Srcrb4d synonymous SNV uc008zzj.2:c.C177A:p.L59L exonic ENSMUSG00000029699 synonymous SNV ENSMUST00000111152:c.C177A:p.L59L 5qG2 NA NA chr5 136444119 CTGxAGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800173 0.800245 0.999909 67 0 0 14.137729 0.2 0.02 -0.306899 28 7 789 184 60 60 0 0 GG 7.217524 24 0 671 0 KEEP - Srcrb4d YES B[a]P_1 chr5 137507818 137507818 G T exonic Vgf synonymous SNV NM_001039385:c.G963T:p.A321A exonic Vgf synonymous SNV uc009abl.1:c.G963T:p.A321A exonic ENSMUSG00000037428 synonymous SNV ENSMUST00000041543:c.G963T:p.A321A 5qG2 NA NA chr5 137507818 CGCxGCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 276 0 0 74.900475 0.227848 0.02 3.766145 122 36 3233 945 60 60 0 0 GG 24.047728 80 0 2072 0 KEEP + Vgf YES B[a]P_1 chr5 137867454 137867454 T A exonic Zan nonsynonymous SNV NM_011741:c.A7799T:p.Q2600L exonic Zan nonsynonymous SNV uc012eey.1:c.A7799T:p.Q2600L exonic ENSMUSG00000079173 nonsynonymous SNV ENSMUST00000164178:c.A7799T:p.Q2600L 5qG2 NA NA chr5 137867454 CACxGGA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934481 0.934492 0.999988 82 1 0 7.313966 0.086957 0.02 -0.403344 42 4 1170 113 60 60 0 0 TT 8.119977 27 0 735 0 KEEP - Zan NO B[a]P_1 chr5 137899207 137899207 G C intronic Zan NA NA intronic Zan NA NA intronic ENSMUSG00000079173 NA NA 5qG2 NA NA chr5 137899207 GTCxCAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 157 0 0 46.157356 0.240964 0.02 0.96829 63 20 1654 565 60 60 0 0 GG 16.178625 54 0 1379 0 KEEP - Zan NO B[a]P_1 chr5 137960617 137960617 T A exonic Gigyf1 nonsynonymous SNV NM_031408:c.T245A:p.L82Q exonic Gigyf1 nonsynonymous SNV uc009acq.1:c.T245A:p.L82Q exonic ENSMUSG00000029714 nonsynonymous SNV ENSMUST00000031727:c.T245A:p.L82Q 5qG2 NA NA chr5 137960617 CTCxGAC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 151 0 0 29.504432 0.151515 0.02 0.818473 84 15 2384 406 60 60 0 0 TT 14.126335 47 0 1291 0 KEEP + Gigyf1 NO B[a]P_1 chr5 138074822 138074822 C T exonic Lrch4 synonymous SNV NM_001168652:c.C243T:p.P81P exonic Lrch4 synonymous SNV uc009ade.2:c.C243T:p.P81P exonic ENSMUSG00000029720 synonymous SNV ENSMUST00000031734:c.C243T:p.P81P 5qG2 NA NA chr5 138074822 TCCxGAG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 424 0 0 105.419432 0.218605 0.02 4.896346 168 47 4373 1320 60 60 0 0 CC 43.537185 145 0 3671 0 KEEP + Lrch4 NO B[a]P_1 chr5 138079550 138079550 G T exonic Lrch4 nonsynonymous SNV NM_001168652:c.G1325T:p.G442V exonic Lrch4 nonsynonymous SNV uc009ade.2:c.G1325T:p.G442V exonic ENSMUSG00000029720 nonsynonymous SNV ENSMUST00000031734:c.G1325T:p.G442V 5qG2 NA NA chr5 138079550 CCGxGGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 148 0 0 26.67623 0.175676 0.02 1.046384 61 13 1696 354 60 60 0 0 GG 18.34644 61 0 1681 0 KEEP + Lrch4 YES B[a]P_1 chr5 138083305 138083305 G C ncRNA_intronic Gm20605 NA NA downstream "Irs3,Lrch4" NA NA intronic ENSMUSG00000079165 NA NA 5qG2 NA NA chr5 138083305 TCTxACT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 321 2 0 57.609203 0.152174 0.02 3.767515 156 28 4383 783 60 60 0 0 GG 31.284062 104 0 2954 0 KEEP + Gm20605 NO B[a]P_1 chr5 138426611 138426611 A T exonic Azgp1 nonsynonymous SNV NM_013478:c.A319T:p.T107S exonic Azgp1 nonsynonymous SNV uc009aeh.2:c.A319T:p.T107S exonic ENSMUSG00000037053 nonsynonymous SNV ENSMUST00000035390:c.A319T:p.T107S 5qG2 NA NA chr5 138426611 ACTxCAG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 97 1 0 22.210494 0.212766 0.02 -0.412116 37 10 1009 280 60 60 0 0 AA 10.826397 36 0 972 0 KEEP + Azgp1 NO B[a]P_1 chr5 138635835 138635835 C A exonic Mblac1 synonymous SNV NM_177878:c.C210A:p.G70G exonic Mblac1 synonymous SNV uc009afa.1:c.C210A:p.G70G exonic ENSMUSG00000049285 synonymous SNV ENSMUST00000057773:c.C210A:p.G70G 5qG2 NA NA chr5 138635835 CGGxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999892 0.999895 0.999997 134 0 0 68.676471 0.311828 0.02 0.978965 64 29 1577 799 60 60 0 0 CC 8.717308 29 0 755 0 KEEP + Mblac1 YES B[a]P_1 chr5 139628821 139628821 G T exonic Heatr2 nonsynonymous SNV NM_001081265:c.G802T:p.G268W exonic Heatr2 nonsynonymous SNV uc009afz.1:c.G802T:p.G268W exonic ENSMUSG00000025857 nonsynonymous SNV ENSMUST00000026975:c.G802T:p.G268W 5qG2 NA NA chr5 139628821 GTCxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 153 1 0 48.249083 0.272727 0.02 1.110735 56 21 1279 578 60 60 0 0 GG 14.999359 50 0 1156 0 KEEP + Heatr2 YES B[a]P_1 chr5 140233130 140233130 T G exonic Ints1 nonsynonymous SNV NM_026748:c.A5044C:p.S1682R exonic Ints1 nonsynonymous SNV uc009ahc.2:c.A5038C:p.S1680R exonic ENSMUSG00000029547 nonsynonymous SNV ENSMUST00000072607:c.A4963C:p.S1655R 5qG2 NA NA chr5 140233130 CACxTAT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959724 0.959859 0.999859 70 0 0 15.178966 0.16 0.02 -0.438354 42 8 1156 209 60 60 0 0 TT 5.388 18 0 481 0 KEEP - Ints1 NO B[a]P_1 chr5 140448782 140448782 G C exonic Elfn1 nonsynonymous SNV NM_175522:c.G1586C:p.R529P exonic Elfn1 nonsynonymous SNV uc009ahi.2:c.G1586C:p.R529P exonic ENSMUSG00000048988 nonsynonymous SNV ENSMUST00000050519:c.G1586C:p.R529P 5qG2 NA NA chr5 140448782 TGCxCAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973847 0.973965 0.999879 82 0 0 20.058587 0.188679 0.02 1.223668 43 10 1011 264 60 60 0 0 GG 6.591011 22 0 538 0 KEEP + Elfn1 NO B[a]P_1 chr5 143722315 143722315 G T exonic Fscn1 nonsynonymous SNV NM_007984:c.G188T:p.R63L exonic Fscn1 nonsynonymous SNV uc009ajl.1:c.G188T:p.R63L exonic ENSMUSG00000029581 nonsynonymous SNV ENSMUST00000031565:c.G188T:p.R63L 5qG2 NA NA chr5 143722315 TGCxCAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993563 0.993703 0.999859 90 0 0 18.466578 0.138462 0.02 1.127365 56 9 1314 255 60 60 0 0 GG 5.409752 18 0 455 0 KEEP + Fscn1 YES B[a]P_1 chr5 144149478 144149478 T C intronic Grid2ip NA NA intronic Grid2ip NA NA intronic ENSMUSG00000010825 NA NA 5qG2 NA NA chr5 144149478 GCCxGGG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 128 4 0 10.510593 0.111111 0.02 1.221764 48 6 1363 158 60 60 0 0 TT 15.940286 53 0 1463 0 KEEP + Grid2ip NO B[a]P_1 chr5 144383412 144383412 T C UTR5 Cyth3 NA NA UTR5 Cyth3 NA NA UTR5 ENSMUSG00000018001 NA NA 5qG2 NA NA chr5 144383412 CTCxCCG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.711964 0.717315 0.99254 44 0 0 13.244384 0.206897 0.02 -0.271848 23 6 651 168 60 60 0 0 TT 2.70719 9 0 252 0 KEEP + Cyth3 NO B[a]P_1 chr5 145804060 145804060 A G intronic 1700018F24Rik NA NA intronic 1700018F24Rik NA NA intronic "ENSMUSG00000029620,ENSMUSG00000038770" NA NA 5qG2 "Score=0.960126;Name=No.91026,chr5:145781231" NA chr5 145804060 AGCxGGA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 741 3 1 62.18684 0.126812 0.02 6.055922 241 35 6843 910 60 60 0 0 AA 104.938186 349 0 9632 0 KEEP + 1700018F24Rik NO B[a]P_1 chr5 145921946 145921946 C A exonic Ptcd1 nonsynonymous SNV NM_133735:c.G550T:p.V184F exonic Ptcd1 nonsynonymous SNV uc009amh.2:c.G550T:p.V184F exonic ENSMUSG00000029624 nonsynonymous SNV ENSMUST00000031628:c.G550T:p.V184F 5qG2 NA NA chr5 145921946 CGAxGCG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976863 0.976865 0.999997 98 0 0 21.958466 0.181818 0.02 1.311882 45 10 1048 285 60 60 0 0 CC 9.602716 32 0 750 0 KEEP - Ptcd1 YES B[a]P_1 chr5 146213672 146213672 T C exonic Cyp3a16 nonsynonymous SNV NM_007820:c.A751G:p.K251E exonic Cyp3a16 nonsynonymous SNV uc009amv.2:c.A751G:p.K251E exonic ENSMUSG00000038656 nonsynonymous SNV ENSMUST00000031633:c.A751G:p.K251E 5qG2 "Score=0.905992;Name=No.91030,chr5:146515299" NA chr5 146213672 ATTxTTT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 182 2 0 25.314094 0.16 0.02 1.037626 63 12 1721 339 60 60 1 0 TT 24.96418 83 0 2313 0 KEEP - Cyp3a16 NO B[a]P_1 chr5 146230458 146230458 T C exonic Cyp3a16 nonsynonymous SNV NM_007820:c.A52G:p.I18V exonic Cyp3a16 nonsynonymous SNV uc009amv.2:c.A52G:p.I18V exonic ENSMUSG00000038656 nonsynonymous SNV ENSMUST00000031633:c.A52G:p.I18V 5qG2 "Score=0.926142;Name=No.91031,chr5:146401416" NA chr5 146230458 GGAxGAT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 179 0 0 7.907081 0.084507 0.02 1.064193 65 6 1764 139 60 60 0 0 TT 21.942254 73 0 1963 0 KEEP - Cyp3a16 NO B[a]P_1 chr5 146389022 146389022 G T intergenic "Cyp3a41b(dist=43423),Cyp3a44(dist=196537)" NA NA intronic Cyp3a41a NA NA intergenic "ENSMUSG00000075552(dist=43423),ENSMUSG00000075551(dist=116613)" NA NA 5qG2 "Score=0.96625;Name=No.91037,chr5:146472978" NA chr5 146389022 AAAxGGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 501 2 0 20.873261 0.066327 0.02 3.171201 183 13 5161 354 60 60 0 0 GG 70.992869 236 0 6725 0 KEEP - Cyp3a41b YES B[a]P_1 chr5 14713786 14713786 A C exonic Pclo nonsynonymous SNV NM_001110796:c.A12272C:p.K4091T exonic Pclo nonsynonymous SNV uc008wmj.2:c.A3380C:p.K1127T exonic ENSMUSG00000061601 nonsynonymous SNV ENSMUST00000030691:c.A12272C:p.K4091T 5qA1 NA NA chr5 14713786 AAAxGTA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999998 90 0 0 16.92622 0.204545 0.02 -0.385232 35 9 962 223 60 60 0 0 AA 9.926172 33 0 922 0 KEEP + Pclo NO B[a]P_1 chr5 151142938 151142938 C G exonic Fry nonsynonymous SNV NM_172887:c.C335G:p.S112C exonic Fry nonsynonymous SNV uc009ats.1:c.C185G:p.S62C exonic ENSMUSG00000056602 nonsynonymous SNV ENSMUST00000045502:c.C326G:p.S109C 5qG3 NA NA chr5 151142938 GCTxTAT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 311 0 0 77.297595 0.216049 0.02 3.665135 127 35 3584 973 60 60 0 0 CC 28.279093 94 0 2717 0 KEEP + Fry NO B[a]P_1 chr5 151191396 151191396 C G exonic Fry nonsynonymous SNV NM_172887:c.C2200G:p.H734D exonic Fry nonsynonymous SNV uc009att.1:c.C2191G:p.H731D exonic ENSMUSG00000056602 nonsynonymous SNV ENSMUST00000045502:c.C2191G:p.H731D 5qG3 NA NA chr5 151191396 CCGxACT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 287 2 0 77.520042 0.232877 0.02 2.289259 112 34 3147 957 60 60 0 0 CC 28.270995 94 0 2621 0 KEEP + Fry NO B[a]P_1 chr5 151350515 151350515 G T splicing "Brca2(NM_009765:exon13:c.6782-1G>T,NM_001081001:exon13:c.6782-1G>T)" NA NA splicing "Brca2(uc009aty.1:exon13:c.6782-1G>T,uc009aua.1:exon13:c.6782-1G>T)" NA NA splicing ENSMUSG00000041147(ENSMUST00000044620:exon13:c.6782-1G>T) NA NA 5qG3 NA NA chr5 151350515 TTAxGCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 108 2 0 28.344958 0.352941 0.02 -0.297839 22 12 599 322 60 60 0 0 GG 14.13764 47 0 1336 0 KEEP + Brca2 YES B[a]P_1 chr5 151361025 151361025 T G exonic Brca2 nonsynonymous SNV NM_001081001:c.T8456G:p.L2819R exonic Brca2 nonsynonymous SNV uc009aty.1:c.T8456G:p.L2819R exonic ENSMUSG00000041147 nonsynonymous SNV ENSMUST00000044620:c.T8456G:p.L2819R 5qG3 NA NA chr5 151361025 CTCxGCA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909006 0.909069 0.999931 76 0 0 10.925225 0.139535 0.02 -0.377051 37 6 1041 156 60 60 0 0 TT 7.519527 25 0 693 0 KEEP + Brca2 NO B[a]P_1 chr5 15162844 15162844 C T ncRNA_exonic 4930572O03Rik NA NA ncRNA_UTR5 Gm9758 NA NA UTR5 ENSMUSG00000069720 NA NA 5qA2 "Score=0.980142;Name=No.90369,chr5:15201863" NA chr5 15162844 TGTxCAT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 367 4 31 19.000587 0.107527 0.02 0.845634 83 10 2317 280 60 60 0 0 CC 65.830714 219 0 6159 0 KEEP + 4930572O03Rik NO B[a]P_1 chr5 152453736 152453736 C A UTR5 Rfc3 NA NA UTR5 Rfc3 NA NA UTR5 ENSMUSG00000033970 NA NA 5qG3 NA NA chr5 152453736 CTCxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 276 1 0 74.37731 0.246377 0.02 2.172436 104 34 2823 916 60 60 0 0 CC 26.699133 89 0 2472 0 KEEP - Rfc3 YES B[a]P_1 chr5 16117625 16117625 T C intronic Hgf NA NA intronic Hgf NA NA intronic ENSMUSG00000028864 NA NA 5qA2 NA NA chr5 16117625 TGGxCCT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 62 0 0 7.896995 0.133333 0.02 -0.263041 26 4 702 111 60 60 0 0 TT 9.014167 30 0 786 0 KEEP + Hgf NO B[a]P_1 chr5 19897300 19897300 G T intronic Magi2 NA NA intronic Magi2 NA NA intronic ENSMUSG00000040003 NA NA 5qA3 NA NA chr5 19897300 GCGxAAT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78095 0.78106 0.999859 59 0 0 19.561846 0.264706 0.02 -0.298138 25 9 707 238 60 60 0 0 GG 5.414332 18 0 506 0 KEEP + Magi2 YES B[a]P_1 chr5 21028884 21028884 C T exonic Fbxl13 nonsynonymous SNV NM_177076:c.G1642A:p.V548I exonic Fbxl13 nonsynonymous SNV uc008wop.2:c.G1642A:p.V548I exonic ENSMUSG00000048520 nonsynonymous SNV ENSMUST00000051358:c.G1642A:p.V548I 5qA3 NA NA chr5 21028884 TGAxAGA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 102 0 0 31.804356 0.304348 0.02 -0.429626 32 14 868 374 60 60 0 0 CC 11.430148 38 0 1066 0 KEEP - Fbxl13 NO B[a]P_1 chr5 23928270 23928270 C A intronic Cdk5 NA NA intronic Cdk5 NA NA intronic ENSMUSG00000028969 NA NA 5qA3 NA NA chr5 23928270 ACCxTCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 210 1 0 40.757191 0.222222 0.02 0.906728 70 20 1886 519 60 60 0 0 CC 30.352789 101 0 2758 0 KEEP - Cdk5 YES B[a]P_1 chr5 28107915 28107915 C G intronic Paxip1 NA NA intronic Paxip1 NA NA intronic ENSMUSG00000002221 NA NA 5qB1 NA NA chr5 28107915 GTCxAAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.999859 54 0 0 10.549358 0.214286 0.02 -0.245441 22 6 609 140 60 60 0 0 CC 5.414347 18 0 505 0 KEEP - Paxip1 NO B[a]P_1 chr5 28107917 28107917 A G intronic Paxip1 NA NA intronic Paxip1 NA NA intronic ENSMUSG00000002221 NA NA 5qB1 NA NA chr5 28107917 CCAxGCT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.999859 56 0 0 16.0638 0.233333 0.02 -0.263071 23 7 640 198 60 60 0 0 AA 5.379772 18 0 481 0 KEEP - Paxip1 NO B[a]P_1 chr5 30062486 30062486 G T UTR5 Dnajb6 NA NA UTR5 Dnajb6 NA NA UTR5 ENSMUSG00000029131 NA NA 5qB1 NA NA chr5 30062486 GTCxCCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999998 102 1 0 39.579078 0.293103 0.02 1.186824 41 17 1084 467 60 60 0 0 GG 9.855239 33 0 827 0 KEEP + Dnajb6 YES B[a]P_1 chr5 3236643 3236643 C A intergenic "NONE(dist=NONE),Cdk6(dist=107669)" NA NA intergenic "V1rg10(dist=235532),Cdk6(dist=107250)" NA NA ncRNA_exonic ENSMUSG00000062353 NA NA 5qA1 "Score=0.943607;Name=No.29599,chr12:8607462" NA chr5 3236643 GGTxCAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 280 3 9 39.692102 0.16 0.02 2.294326 105 20 2960 540 60 60 0 0 CC 34.548743 115 0 3212 0 KEEP NA NONE YES B[a]P_1 chr5 32455335 32455335 G T exonic Fosl2 nonsynonymous SNV NM_008037:c.G754T:p.G252W exonic Fosl2 nonsynonymous SNV uc008wzj.1:c.G673T:p.G225W exonic ENSMUSG00000029135 nonsynonymous SNV ENSMUST00000031017:c.G754T:p.G252W 5qB1 NA NA chr5 32455335 GCCxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 365 5 0 28.583461 0.082474 0.02 3.484518 178 16 4465 449 60 60 0 0 GG 40.222959 134 0 3317 0 KEEP + Fosl2 YES B[a]P_1 chr5 32913906 32913906 T G UTR5 Yes1 NA NA UTR5 Yes1 NA NA ncRNA_UTR5 ENSMUSG00000014932 NA NA 5qB1 NA NA chr5 32913906 AACxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 161 0 0 20.138444 0.127451 0.02 2.070586 89 13 2529 308 60 60 0 0 TT 12.32909 41 0 1121 0 KEEP + Yes1 NO B[a]P_1 chr5 34070323 34070323 A T exonic Fgfr3 nonsynonymous SNV NM_001163216:c.A131T:p.Q44L exonic Fgfr3 nonsynonymous SNV uc008xbh.2:c.A131T:p.Q44L exonic ENSMUSG00000054252 nonsynonymous SNV ENSMUST00000087820:c.A131T:p.Q44L 5qB2 NA NA chr5 34070323 AGCxGGA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.896158 0.899314 0.99649 65 0 0 12.187694 0.142857 0.02 -0.368305 36 6 1009 168 60 60 0 0 AA 4.511452 15 0 412 0 KEEP + Fgfr3 NO B[a]P_1 chr5 36956808 36956808 C A exonic D5Ertd579e unknown UNKNOWN exonic D5Ertd579e nonsynonymous SNV uc012dvj.1:c.G2756T:p.C919F exonic ENSMUSG00000029190 nonsynonymous SNV ENSMUST00000132383:c.G2525T:p.C842F 5qB3 NA NA chr5 36956808 GCAxACT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 131 1 0 28.512557 0.186667 0.02 0.939762 61 14 1672 375 60 60 0 0 CC 12.933632 43 0 1202 0 KEEP - D5Ertd579e YES B[a]P_1 chr5 38592419 38592419 G A exonic Zbtb49 synonymous SNV NM_029162:c.C1728T:p.H576H exonic Zbtb49 synonymous SNV uc008xge.1:c.C204T:p.H68H exonic ENSMUSG00000029127 nonsynonymous SNV ENSMUST00000075525:c.C751T:p.R251W 5qB3 NA NA chr5 38592419 GCCxTGC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999998 100 0 0 23.502853 0.203704 0.02 1.222016 43 11 1051 301 60 60 0 0 GG 9.9157 33 0 820 0 KEEP - Zbtb49 NO B[a]P_1 chr5 38689068 38689068 A C intronic Otop1 NA NA intronic Otop1 NA NA intronic ENSMUSG00000051596 NA NA 5qB3 NA NA chr5 38689068 AAAxACG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.973698 0.973965 0.999725 103 2 0 12.108575 0.12963 0.02 1.026554 47 7 1289 178 60 60 0 0 AA 9.89143 33 0 895 0 KEEP + Otop1 NO B[a]P_1 chr5 39155663 39155663 C G intronic Clnk NA NA intronic Clnk NA NA intronic ENSMUSG00000039315 NA NA 5qB3 NA NA chr5 39155663 GCAxCAT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899232 0.899314 0.999909 79 0 0 19.420628 0.214286 0.02 -0.368288 33 9 920 246 60 60 0 0 CC 7.218746 24 0 667 0 KEEP - Clnk NO B[a]P_1 chr5 4055265 4055265 T C exonic Akap9 synonymous SNV NM_194462:c.T8574C:p.S2858S exonic Akap9 synonymous SNV uc008wid.1:c.T8574C:p.S2858S exonic ENSMUSG00000040407 synonymous SNV ENSMUST00000088917:c.T2151C:p.S717S 5qA1 NA NA chr5 4055265 ATCxTGG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9266 0.92664 0.999957 80 0 0 17.375384 0.177778 0.02 -0.394601 37 8 1024 227 60 60 0 0 TT 7.819728 26 0 719 0 KEEP + Akap9 NO B[a]P_1 chr5 68142251 68142251 C T splicing "Atp8a1(NM_009727:exon16:c.1368+1G>A,NM_001284345:exon17:c.1413+1G>A,NM_001038999:exon17:c.1413+1G>A)" NA NA splicing "Atp8a1(uc008xqa.1:exon17:c.1413+1G>A,uc008xqb.1:exon16:c.1368+1G>A,uc008xqc.1:exon17:c.1413+1G>A,uc008xqd.1:exon9:c.855+1G>A)" NA NA splicing "ENSMUSG00000037685(ENSMUST00000037380:exon17:c.1413+1G>A,ENSMUST00000072971:exon16:c.1368+1G>A,ENSMUST00000135930:exon17:c.1409+1G>A)" NA NA 5qC3.1 NA NA chr5 68142251 TTAxGTG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 165 0 0 39.099509 0.230769 0.02 0.913701 60 18 1517 488 60 60 0 0 CC 18.33306 61 0 1548 0 KEEP - Atp8a1 NO B[a]P_1 chr5 72660707 72660707 G T intronic Atp10d NA NA intronic Atp10d NA NA ncRNA_intronic ENSMUSG00000046808 NA NA 5qC3.2 NA NA chr5 72660707 GGTxAGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.779366 0.78106 0.997832 59 0 0 14.635336 0.205882 0.02 -0.298157 27 7 770 188 60 60 0 0 GG 4.805875 16 0 442 0 KEEP + Atp10d YES B[a]P_1 chr5 72826543 72826543 C A exonic Corin nonsynonymous SNV NM_001122756:c.G551T:p.C184F exonic Corin nonsynonymous SNV uc008xrj.2:c.G749T:p.C250F exonic ENSMUSG00000005220 nonsynonymous SNV ENSMUST00000005352:c.G749T:p.C250F 5qC3.2 NA NA chr5 72826543 TAGxAAC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.921442 0.92664 0.994391 62 0 0 42.352249 0.377778 0.02 -0.394576 28 17 774 472 60 60 0 0 CC 3.909726 13 0 357 0 KEEP - Corin YES B[a]P_1 chr5 82153127 82153127 C A exonic Lphn3 nonsynonymous SNV NM_198702:c.C2846A:p.T949K exonic Lphn3 nonsynonymous SNV uc008xwr.1:c.C860A:p.T287K exonic ENSMUSG00000037605 nonsynonymous SNV ENSMUST00000117985:c.C2642A:p.T881K 5qE1 NA NA chr5 82153127 TCAxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 467 1 0 191.081291 0.318725 0.02 6.276849 171 80 4343 2211 60 60 0 0 CC 48.387062 161 0 4224 0 KEEP + Lphn3 YES B[a]P_1 chr5 91202015 91202015 A T exonic Pf4 nonsynonymous SNV NM_019932:c.A175T:p.I59F exonic Pf4 nonsynonymous SNV uc008ybi.2:c.A175T:p.I59F exonic ENSMUSG00000029373 nonsynonymous SNV ENSMUST00000031320:c.A175T:p.I59F 5qE1 NA NA chr5 91202015 CACxTCA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 207 0 0 91.604789 0.316667 0.02 2.338609 82 38 2208 1060 60 60 0 0 AA 19.24651 64 0 1720 0 KEEP + Pf4 NO B[a]P_1 chr5 91403400 91403400 A C exonic Mthfd2l nonsynonymous SNV NM_026788:c.A737C:p.K246T exonic Mthfd2l nonsynonymous SNV uc008ybp.1:c.A737C:p.K246T exonic ENSMUSG00000029376 nonsynonymous SNV ENSMUST00000071652:c.A737C:p.K246T 5qE1 NA NA chr5 91403400 TGAxGGC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 251 2 0 9.001994 0.075269 0.02 0.675806 86 7 2403 164 60 60 0 0 AA 36.060754 120 0 3335 0 KEEP + Mthfd2l NO B[a]P_1 chr5 93348638 93348638 C A intronic Shroom3 NA NA intronic Shroom3 NA NA intronic ENSMUSG00000029381 NA NA 5qE2 NA NA chr5 93348638 TCGxGCT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 189 0 0 63.588648 0.264706 0.02 2.683965 75 27 2027 763 60 60 0 0 CC 17.734334 59 0 1553 0 KEEP + Shroom3 YES B[a]P_1 chr5 97043815 97043815 C A exonic Fras1 nonsynonymous SNV NM_175473:c.C2156A:p.T719K exonic Fras1 nonsynonymous SNV uc008yfk.1:c.C2156A:p.T719K exonic ENSMUSG00000034687 nonsynonymous SNV ENSMUST00000036019:c.C2156A:p.T719K 5qE3 NA NA chr5 97043815 TCAxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 176 0 0 70.028315 0.318681 0.02 0.996728 62 29 1473 809 60 60 0 0 CC 18.930059 63 0 1568 0 KEEP + Fras1 YES B[a]P_1 chr6 102137069 102137069 A G exonic Cntn3 nonsynonymous SNV NM_008779:c.T2669C:p.F890S exonic Cntn3 nonsynonymous SNV uc009dch.1:c.T2669C:p.F890S exonic ENSMUSG00000030075 nonsynonymous SNV ENSMUST00000168734:c.T1337C:p.F446S 6qD3 NA NA chr6 102137069 CTGxAGG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926639 0.92664 0.999999 97 0 0 7.793075 0.090909 0.02 -0.385841 40 4 1120 117 60 60 0 0 AA 10.465817 35 0 955 0 KEEP - Cntn3 NO B[a]P_1 chr6 115761287 115761287 G T intronic Efcab12 NA NA intronic BC060267 NA NA ncRNA_intronic ENSMUSG00000030321 NA NA 6qE3 NA NA chr6 115761287 GTGxCAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.689777 0.693668 0.994391 48 0 0 8.159536 0.137931 0.02 -0.2543 25 4 694 113 60 60 0 0 GG 3.908961 13 0 346 0 KEEP - Efcab12 YES B[a]P_1 chr6 115860214 115860214 G C intronic Ift122 NA NA ncRNA_intronic mFLJ00025 NA NA intronic ENSMUSG00000030323 NA NA 6qE3 NA NA chr6 115860214 CCGxAAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.636582 0.641347 0.99257 40 0 0 7.825727 0.142857 0.02 -0.245521 24 4 673 109 60 60 0 0 GG 2.40635 8 0 224 0 KEEP + Ift122 NO B[a]P_1 chr6 115904900 115904900 C A UTR3 Plxnd1 NA NA UTR3 Plxnd1 NA NA UTR3 ENSMUSG00000030123 NA NA 6qE3 NA NA chr6 115904900 GCCxCCT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999407 0.999407 1 224 0 0 20.926195 0.134146 0.02 1.074613 71 11 1984 297 60 60 0 0 CC 33.935408 113 0 3079 0 KEEP - Plxnd1 YES B[a]P_1 chr6 115972212 115972212 T A exonic Tmcc1 nonsynonymous SNV NM_177412:c.A1843T:p.N615Y exonic Tmcc1 nonsynonymous SNV uc009djo.2:c.A883T:p.N295Y exonic ENSMUSG00000030126 nonsynonymous SNV ENSMUST00000172510:c.A496T:p.N166Y 6qE3 NA NA chr6 115972212 TGTxGCG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 80 2 0 11.402245 0.133333 0.02 -0.393846 39 6 1050 162 60 60 0 0 TT 9.905211 33 0 889 0 KEEP - Tmcc1 NO B[a]P_1 chr6 118059374 118059374 C A exonic Csgalnact2 nonsynonymous SNV NM_030165:c.G1375T:p.D459Y exonic Csgalnact2 nonsynonymous SNV uc009dll.1:c.G1375T:p.D459Y exonic ENSMUSG00000042042 nonsynonymous SNV ENSMUST00000136265:c.G649T:p.D217Y 6qF1 NA NA chr6 118059374 CATxTTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 137 1 0 19.647616 0.140845 0.02 0.974749 61 10 1731 274 60 60 0 0 CC 15.643194 52 0 1493 0 KEEP - Csgalnact2 YES B[a]P_1 chr6 119191112 119191112 G T intronic Cacna2d4 NA NA intronic Cacna2d4 NA NA intronic ENSMUSG00000041460 NA NA 6qF1 NA NA chr6 119191112 TGTxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 136 0 0 55.901951 0.311688 0.02 1.020045 53 24 1494 652 60 60 0 0 GG 14.721355 49 0 1369 0 KEEP + Cacna2d4 YES B[a]P_1 chr6 119912811 119912811 C A exonic Wnk1 nonsynonymous SNV NM_001199084:c.G2982T:p.Q994H exonic Wnk1 nonsynonymous SNV uc012ers.1:c.G2982T:p.Q994H ncRNA_exonic ENSMUSG00000089896 NA NA 6qF1 NA NA chr6 119912811 AACxTGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 74 0 0 11.525789 0.15 0.02 -0.350773 34 6 971 160 60 60 0 0 CC 9.01459 30 0 834 0 KEEP - Wnk1 YES B[a]P_1 chr6 121287388 121287388 C A exonic Slc6a13 nonsynonymous SNV NM_144512:c.C1763A:p.P588Q exonic Slc6a13 nonsynonymous SNV uc009doj.1:c.C1763A:p.P588Q exonic ENSMUSG00000030108 nonsynonymous SNV ENSMUST00000064580:c.C1763A:p.P588Q 6qF1 NA NA chr6 121287388 CACxGAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98416 0.984161 0.999999 105 0 0 32.467602 0.258621 0.02 1.187113 43 15 1035 397 60 60 0 0 CC 10.814697 36 0 878 0 KEEP + Slc6a13 YES B[a]P_1 chr6 121287389 121287389 G T exonic Slc6a13 synonymous SNV NM_144512:c.G1764T:p.P588P exonic Slc6a13 synonymous SNV uc009doj.1:c.G1764T:p.P588P exonic ENSMUSG00000030108 synonymous SNV ENSMUST00000064580:c.G1764T:p.P588P 6qF1 NA NA chr6 121287389 ACCxATG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98416 0.984161 0.999999 104 0 0 32.665975 0.258621 0.02 1.089036 43 15 1143 399 60 60 0 0 GG 10.523812 35 0 961 0 KEEP + Slc6a13 YES B[a]P_1 chr6 121997530 121997530 C A intronic Mug2 NA NA intronic Mug2 NA NA intronic ENSMUSG00000030131 NA NA 6qF1 "Score=0.919549;Name=No.94034,chr6:121864131" NA chr6 121997530 CCCxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 160 1 0 36.21045 0.232877 0.02 1.055123 56 17 1567 453 60 60 0 0 CC 21.353419 71 0 2012 0 KEEP + Mug2 YES B[a]P_1 chr6 123235445 123235445 A C intronic Clec4e NA NA intronic Clec4e NA NA intronic ENSMUSG00000030142 NA NA 6qF2 NA NA chr6 123235445 TTAxGGT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 170 0 0 29.394997 0.188235 0.02 0.754738 69 16 1925 396 60 60 0 0 AA 20.152819 67 0 1866 0 KEEP - Clec4e NO B[a]P_1 chr6 124382128 124382128 C A exonic Clstn3 nonsynonymous SNV NM_153508:c.G2578T:p.V860L exonic Clstn3 nonsynonymous SNV uc009dqw.2:c.G2578T:p.V860L exonic ENSMUSG00000008153 nonsynonymous SNV ENSMUST00000008297:c.G2578T:p.V860L 6qF2 NA NA chr6 124382128 GCAxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739567 0.739671 0.999859 61 0 0 9.966968 0.15625 0.02 -0.280609 27 5 758 136 60 60 0 0 CC 5.41451 18 0 507 0 KEEP - Clstn3 YES B[a]P_1 chr6 124949708 124949708 G T exonic Pianp nonsynonymous SNV NM_001145926:c.G461T:p.G154V exonic C530028O21Rik nonsynonymous SNV uc009dst.2:c.G461T:p.G154V exonic ENSMUSG00000030329 nonsynonymous SNV ENSMUST00000160666:c.G29T:p.G10V 6qF2 NA NA chr6 124949708 TTGxGGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 223 2 0 61.304777 0.223077 0.02 2.154174 101 29 2826 774 60 60 0 0 GG 21.356228 71 0 1982 0 KEEP + Pianp YES B[a]P_1 chr6 125325773 125325773 T G exonic Plekhg6 nonsynonymous SNV NM_198604:c.A428C:p.K143T exonic Plekhg6 nonsynonymous SNV uc009dum.1:c.A428C:p.K143T exonic ENSMUSG00000038167 nonsynonymous SNV ENSMUST00000042647:c.A428C:p.K143T 6qF3 NA NA chr6 125325773 GACxTTT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 285 6 0 49.644783 0.18543 0.02 3.468148 123 28 3450 677 60 60 0 0 TT 31.272457 104 0 2863 0 KEEP - Plekhg6 NO B[a]P_1 chr6 126844804 126844804 A T exonic Dyrk4 nonsynonymous SNV NM_207210:c.T518A:p.L173Q exonic Dyrk4 nonsynonymous SNV uc009dvg.1:c.T440A:p.L147Q exonic ENSMUSG00000030345 nonsynonymous SNV ENSMUST00000032495:c.T413A:p.L138Q 6qF3 NA NA chr6 126844804 CCCxGGA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 118 1 0 22.910093 0.212766 0.02 -0.412137 37 10 1033 287 60 60 0 0 AA 15.631263 52 0 1429 0 KEEP - Dyrk4 NO B[a]P_1 chr6 127915325 127915325 T G exonic Tspan9 nonsynonymous SNV NM_175414:c.A579C:p.K193N exonic Tspan9 nonsynonymous SNV uc009ecq.1:c.A579C:p.K193N exonic ENSMUSG00000030352 nonsynonymous SNV ENSMUST00000112173:c.A579C:p.K193N 6qF3 NA NA chr6 127915325 CACxTTT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 130 4 0 28.375334 0.212121 0.02 1.018655 52 14 1443 365 60 60 0 0 TT 13.234294 44 0 1220 0 KEEP - Tspan9 NO B[a]P_1 chr6 148106477 148106477 C A exonic Far2 nonsynonymous SNV NM_178797:c.C767A:p.A256E exonic Far2 nonsynonymous SNV uc009etb.1:c.C767A:p.A256E exonic ENSMUSG00000030303 nonsynonymous SNV ENSMUST00000032443:c.C767A:p.A256E 6qG3 NA NA chr6 148106477 TTGxGGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 72 0 0 12.393491 0.176471 0.02 -0.297529 28 6 643 164 60 60 0 0 CC 9.008889 30 0 725 0 KEEP + Far2 YES B[a]P_1 chr6 148106479 148106479 G T splicing Far2(NM_178797:exon6:c.768+1G>T) NA NA splicing "Far2(uc009etb.1:exon6:c.768+1G>T,uc009etc.1:exon6:c.768+1G>T)" NA NA splicing "ENSMUSG00000030303(ENSMUST00000032443:exon6:c.768+1G>T,ENSMUST00000111607:exon6:c.768+1G>T)" NA NA 6qG3 NA NA chr6 148106479 GCGxTAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 68 0 0 12.560285 0.1875 0.02 -0.280558 26 6 694 164 60 60 0 0 GG 8.721671 29 0 789 0 KEEP + Far2 YES B[a]P_1 chr6 148143783 148143783 G A exonic Ergic2 nonsynonymous SNV NM_026168:c.C506T:p.A169V exonic Ergic2 nonsynonymous SNV uc009etf.1:c.C257T:p.A86V exonic ENSMUSG00000030304 nonsynonymous SNV ENSMUST00000032447:c.C506T:p.A169V 6qG3 NA NA chr6 148143783 CACxCAT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 196 0 0 46.329009 0.238636 0.02 0.915084 67 21 1738 573 60 60 0 0 GG 21.040079 70 0 1802 0 KEEP - Ergic2 NO B[a]P_1 chr6 18058919 18058919 C A intronic Asz1 NA NA intronic Asz1 NA NA intronic ENSMUSG00000010796 NA NA 6qA2 NA NA chr6 18058919 TTGxCTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 181 3 0 30.120234 0.184211 0.02 1.020025 62 14 1720 392 60 60 0 0 CC 21.354673 71 0 1958 0 KEEP - Asz1 YES B[a]P_1 chr6 18058920 18058920 C A intronic Asz1 NA NA intronic Asz1 NA NA intronic ENSMUSG00000010796 NA NA 6qA2 NA NA chr6 18058920 TGCxTTC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.998993 0.998993 1 184 3 0 29.53331 0.181818 0.02 0.913415 63 14 1750 387 60 60 0 0 CC 21.355709 71 0 1997 0 KEEP - Asz1 YES B[a]P_1 chr6 18347482 18347482 C A intronic Cttnbp2 NA NA intronic Cttnbp2 NA NA intronic ENSMUSG00000000416 NA NA 6qA2 NA NA chr6 18347482 TTCxAGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.98195 0.981955 0.999994 105 0 0 18.734172 0.166667 0.02 1.195398 45 9 1254 250 70 60 0 0 CC 13.236107 44 0 1261 0 KEEP - Cttnbp2 YES B[a]P_1 chr6 23063531 23063531 C G exonic Aass synonymous SNV NM_013930:c.G789C:p.T263T exonic Aass synonymous SNV uc009bbc.2:c.G789C:p.T263T exonic ENSMUSG00000029695 synonymous SNV ENSMUST00000031707:c.G789C:p.T263T 6qA3.1 NA NA chr6 23063531 CACxGTC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 77 1 0 21.01181 0.25 0.02 -0.350291 30 10 696 260 60 60 0 0 CC 8.71263 29 0 718 0 KEEP - Aass NO B[a]P_1 chr6 29485540 29485540 C G intronic Irf5 NA NA intronic Irf5 NA NA intronic ENSMUSG00000029771 NA NA 6qA3.3 NA NA chr6 29485540 TTGxCAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 128 2 0 37.757801 0.217949 0.02 1.109611 61 17 1678 474 60 60 0 0 CC 11.722354 39 0 1059 0 KEEP + Irf5 NO B[a]P_1 chr6 36473708 36473708 G T exonic Chrm2 nonsynonymous SNV NM_203491:c.G499T:p.G167W exonic Chrm2 nonsynonymous SNV uc012ejz.1:c.G499T:p.G167W exonic ENSMUSG00000045613 nonsynonymous SNV ENSMUST00000062520:c.G499T:p.G167W 6qB1 NA NA chr6 36473708 GTAxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 290 1 0 85.787751 0.271429 0.02 1.958332 102 38 2864 1032 60 60 0 0 GG 36.677152 122 0 3412 0 KEEP + Chrm2 YES B[a]P_1 chr6 36797351 36797351 A C UTR3 Dgki NA NA UTR3 Dgki NA NA UTR3 ENSMUSG00000038665 NA NA 6qB1 NA NA chr6 36797351 TCAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 143 0 0 8.094363 0.095238 0.02 1.045008 57 6 1588 138 60 60 0 0 AA 18.044399 60 0 1653 0 KEEP - Dgki NO B[a]P_1 chr6 38977672 38977672 G T exonic Tbxas1 nonsynonymous SNV NM_011539:c.G853T:p.A285S exonic Tbxas1 nonsynonymous SNV uc009blf.1:c.G499T:p.A167S exonic ENSMUSG00000029925 nonsynonymous SNV ENSMUST00000003017:c.G853T:p.A285S 6qB1 NA NA chr6 38977672 GATxCCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 309 0 0 14.169096 0.052023 0.02 3.35562 164 9 4564 252 60 60 0 0 GG 33.982562 113 0 3202 0 KEEP + Tbxas1 YES B[a]P_1 chr6 38977673 38977673 C G exonic Tbxas1 nonsynonymous SNV NM_011539:c.C854G:p.A285G exonic Tbxas1 nonsynonymous SNV uc009blf.1:c.C500G:p.A167G exonic ENSMUSG00000029925 nonsynonymous SNV ENSMUST00000003017:c.C854G:p.A285G 6qB1 NA NA chr6 38977673 ATGxCCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 311 0 0 13.214427 0.051136 0.02 3.427843 167 9 4548 243 60 60 0 0 CC 33.960036 113 0 3043 0 KEEP + Tbxas1 NO B[a]P_1 chr6 39039132 39039132 G C intronic Parp12 NA NA intronic Parp12 NA NA intronic ENSMUSG00000038507 NA NA 6qB1 NA NA chr6 39039132 CTAxAAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.69362 0.693668 0.999931 66 0 0 18.665195 0.266667 0.02 -0.262936 22 8 613 224 60 60 0 0 GG 7.520512 25 0 712 0 KEEP - Parp12 NO B[a]P_1 chr6 40368649 40368649 G T intronic E330009J07Rik NA NA intronic E330009J07Rik NA NA intronic ENSMUSG00000037172 NA NA 6qB1 NA NA chr6 40368649 TGTxTAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888759 0.888875 0.999869 73 3 0 11.925693 0.15 0.02 -0.359474 34 6 912 164 60 60 0 0 GG 6.3171 21 0 596 0 KEEP - E330009J07Rik YES B[a]P_1 chr6 41347135 41347135 A C exonic Gm5771 nonsynonymous SNV NM_001038997:c.A671C:p.N224T exonic Gm5771 nonsynonymous SNV uc009bow.2:c.A671C:p.N224T exonic ENSMUSG00000058119 nonsynonymous SNV ENSMUST00000049079:c.A671C:p.N224T 6qB1 "Score=0.964411;Name=No.93602,chr6:41366210" NA chr6 41347135 ACAxTCC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 251 0 0 46.550128 0.188034 0.02 2.55243 95 22 2572 606 60 60 0 0 AA 32.772939 109 0 2965 0 KEEP + Gm5771 NO B[a]P_1 chr6 42421784 42421784 C G exonic Olfr457 nonsynonymous SNV NM_146987:c.G392C:p.R131P exonic Olfr457 nonsynonymous SNV uc009brj.1:c.G392C:p.R131P exonic ENSMUSG00000091983 nonsynonymous SNV ENSMUST00000170504:c.G392C:p.R131P 6qB2.1 NA NA chr6 42421784 TACxGTA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 205 2 5 23.95861 0.136842 0.02 0.764935 82 13 2059 342 60 60 0 0 CC 23.436332 78 0 1960 0 KEEP - Olfr457 NO B[a]P_1 chr6 42436269 42436269 T C exonic Olfr456 nonsynonymous SNV NM_001011528:c.A922G:p.I308V exonic Olfr456 nonsynonymous SNV uc009brk.2:c.A922G:p.I308V exonic ENSMUSG00000090631 nonsynonymous SNV ENSMUST00000057251:c.A922G:p.I308V 6qB2.1 NA NA chr6 42436269 CAAxGTT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 89 0 0 7.910445 0.09434 0.02 1.03542 48 5 1268 127 60 60 0 0 TT 8.721493 29 0 784 0 KEEP - Olfr456 NO B[a]P_1 chr6 42694300 42694300 C A exonic Olfr453 nonsynonymous SNV NM_001011799:c.C263A:p.T88K exonic Olfr453 nonsynonymous SNV uc009brv.1:c.C263A:p.T88K exonic ENSMUSG00000048504 nonsynonymous SNV ENSMUST00000053647:c.C263A:p.T88K 6qB2.1 NA NA chr6 42694300 CCAxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995686 0.995687 0.999999 117 0 0 20.149892 0.147059 0.02 1.099061 58 10 1565 277 60 60 0 0 CC 10.827136 36 0 1006 0 KEEP + Olfr453 YES B[a]P_1 chr6 42788347 42788347 T G exonic Olfr449 nonsynonymous SNV NM_147064:c.T466G:p.S156A exonic Olfr449 nonsynonymous SNV uc009brz.1:c.T466G:p.S156A exonic ENSMUSG00000049168 nonsynonymous SNV ENSMUST00000050729:c.T466G:p.S156A 6qB2.1 NA NA chr6 42788347 ATCxCTT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 240 1 0 77.071619 0.321739 0.02 2.382414 78 37 2197 908 60 60 0 0 TT 28.837626 96 0 2639 0 KEEP + Olfr449 NO B[a]P_1 chr6 43185582 43185582 G C upstream Olfr47 NA NA upstream Olfr47 NA NA UTR5 ENSMUSG00000061210 NA NA 6qB2.1 NA NA chr6 43185582 TCAxTTT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 102 0 0 25.993934 0.266667 0.02 -0.394577 33 12 924 316 60 60 0 0 GG 13.838403 46 0 1323 0 KEEP NA Olfr47 NO B[a]P_1 chr6 48362293 48362293 G C exonic Krba1 nonsynonymous SNV NM_133922:c.G1642C:p.E548Q exonic Krba1 nonsynonymous SNV uc009bub.2:c.G1609C:p.E537Q exonic ENSMUSG00000042810 nonsynonymous SNV ENSMUST00000031815:c.G1609C:p.E537Q 6qB2.3 NA NA chr6 48362293 TCTxAGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.81669 0.818465 0.997832 55 0 0 32.475604 0.361111 0.02 -0.315687 23 13 646 365 60 60 0 0 GG 4.813302 16 0 459 0 KEEP + Krba1 NO B[a]P_1 chr6 4856632 4856632 G C exonic Ppp1r9a nonsynonymous SNV NM_181595:c.G1186C:p.V396L exonic Ppp1r9a nonsynonymous SNV uc009avx.1:c.G1186C:p.V396L exonic ENSMUSG00000032827 nonsynonymous SNV ENSMUST00000035813:c.G1186C:p.V396L 6qA1 NA NA chr6 4856632 CACxTAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.756043 0.760887 0.993634 48 0 0 15.739688 0.212121 0.02 -0.289151 26 7 626 198 60 60 0 0 GG 3.60614 12 0 305 0 KEEP + Ppp1r9a NO B[a]P_1 chr6 48926375 48926375 C A exonic Doxl2 synonymous SNV NM_001029987:c.C1234A:p.R412R exonic Doxl2 synonymous SNV uc009bwd.1:c.C1234A:p.R412R exonic ENSMUSG00000068536 synonymous SNV ENSMUST00000090063:c.C1234A:p.R412R 6qB2.3 NA NA chr6 48926375 CCAxGAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 143 2 0 32.968402 0.211268 0.02 1.072982 56 15 1390 417 60 60 0 0 CC 18.324761 61 0 1486 0 KEEP + Doxl2 YES B[a]P_1 chr6 56730019 56730019 T A exonic Kbtbd2 nonsynonymous SNV NM_145958:c.A725T:p.K242M exonic Kbtbd2 nonsynonymous SNV uc009cbm.2:c.A725T:p.K242M exonic ENSMUSG00000059486 nonsynonymous SNV ENSMUST00000114321:c.A725T:p.K242M 6qB3 NA NA chr6 56730019 GACxTAT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 99 0 0 23.500483 0.211538 0.02 1.141367 41 11 1144 299 60 60 0 0 TT 11.429803 38 0 1058 0 KEEP - Kbtbd2 NO B[a]P_1 chr6 65397377 65397377 C T exonic C130060K24Rik synonymous SNV NM_175524:c.C519T:p.I173I exonic C130060K24Rik synonymous SNV uc009cef.2:c.C519T:p.I173I exonic ENSMUSG00000029917 synonymous SNV ENSMUST00000133352:c.C360T:p.I120I 6qC1 NA NA chr6 65397377 CATxATC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 152 0 0 10.902798 0.1 0.02 1.160331 54 6 1511 165 60 60 0 0 CC 17.203422 61 1 1737 10 KEEP + C130060K24Rik NO B[a]P_1 chr6 67242345 67242345 G A exonic Il12rb2 nonsynonymous SNV NM_008354:c.C2477T:p.P826L exonic Il12rb2 nonsynonymous SNV uc009cfo.1:c.C2477T:p.P826L exonic ENSMUSG00000018341 nonsynonymous SNV ENSMUST00000117441:c.C1475T:p.P492L 6qC1 NA NA chr6 67242345 GTTxGGT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990962 0.990964 0.999997 108 1 0 20.882551 0.16129 0.02 1.249834 52 10 1465 280 60 60 0 0 GG 9.625843 32 0 902 0 KEEP - Il12rb2 NO B[a]P_1 chr6 69177401 69177401 A G intergenic "4930515G16Rik(dist=1661708),Rprl1(dist=99530)" NA NA ncRNA_intronic abParts NA NA upstream ENSMUSG00000076545 NA NA 6qC1 "Score=0.942396;Name=No.93865,chr6:69214802" NA chr6 69177401 CCTxGCT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 505 6 15 74.223194 0.258065 0.02 2.401368 92 32 2595 897 60 60 0 0 AA 91.1403 303 0 8471 0 KEEP + 4930515G16Rik NO B[a]P_1 chr6 70165376 70165376 C A intergenic "Rprl1(dist=888208),Rpia(dist=550338)" NA NA ncRNA_intronic abParts NA NA upstream ENSMUSG00000076582 NA NA 6qC1 "Score=0.970312;Name=No.93926,chr6:70311569" NA chr6 70165376 AACxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 386 0 0 29.707473 0.103226 0.02 3.816582 139 16 3858 444 60 60 0 0 CC 52.029985 173 0 4854 0 KEEP + Rprl1 YES B[a]P_1 chr6 70654043 70654043 C A intergenic "Rprl1(dist=1376875),Rpia(dist=61671)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076603 nonsynonymous SNV ENSMUST00000103404:c.C231A:p.N77K 6qC1 "Score=0.954577;Name=No.93942,chr6:70646552" NA chr6 70654043 CAAxGTA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 428 2 0 73.979228 0.22449 0.02 2.29067 114 33 2696 922 60 60 0 0 CC 63.395819 211 0 5241 0 KEEP + Rprl1 YES B[a]P_1 chr6 70910533 70910533 G C exonic Foxi3 nonsynonymous SNV NM_001101464:c.G676C:p.A226P exonic Foxi3 nonsynonymous SNV uc012ene.1:c.G676C:p.A226P exonic ENSMUSG00000055874 nonsynonymous SNV ENSMUST00000069634:c.G676C:p.A226P 6qC1 NA NA chr6 70910533 CGCxCGG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 109 0 0 32.117802 0.25 0.02 1.204837 42 14 1040 391 60 60 0 0 GG 14.963705 50 0 1247 0 KEEP + Foxi3 NO B[a]P_1 chr6 82999915 82999915 G T exonic Loxl3 nonsynonymous SNV NM_013586:c.G1730T:p.R577L exonic Loxl3 nonsynonymous SNV uc009clt.1:c.G1730T:p.R577L exonic ENSMUSG00000000693 nonsynonymous SNV ENSMUST00000000707:c.G1730T:p.R577L 6qC3 NA NA chr6 82999915 GGCxTCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 278 4 0 36.455537 0.134328 0.02 2.404426 116 18 2827 508 60 60 0 0 GG 29.13761 97 0 2442 0 KEEP + Loxl3 YES B[a]P_1 chr6 83217547 83217547 G A exonic Slc4a5 nonsynonymous SNV NM_001166067:c.G913A:p.D305N exonic Slc4a5 nonsynonymous SNV uc012enx.1:c.G913A:p.D305N exonic ENSMUSG00000068323 nonsynonymous SNV ENSMUST00000039212:c.G913A:p.D305N 6qC3 NA NA chr6 83217547 GCTxACA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 107 0 0 9.01861 0.090909 0.02 1.115046 50 5 1417 139 60 60 0 0 GG 12.334022 41 0 1177 0 KEEP + Slc4a5 NO B[a]P_1 chr6 83354563 83354563 C A exonic Tet3 nonsynonymous SNV NM_183138:c.G211T:p.V71L exonic Tet3 nonsynonymous SNV uc009cni.2:c.G211T:p.V71L exonic ENSMUSG00000034832 nonsynonymous SNV ENSMUST00000089622:c.G211T:p.V71L 6qC3 NA NA chr6 83354563 CCAxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 175 0 0 53.001275 0.235294 0.02 2.488053 78 24 1875 657 60 60 0 0 CC 17.12087 57 0 1391 0 KEEP - Tet3 YES B[a]P_1 chr6 83703735 83703735 A C intronic Atp6v1b1 NA NA intronic Atp6v1b1 NA NA intronic ENSMUSG00000006269 NA NA 6qC3 NA NA chr6 83703735 TTAxCCT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 102 3 0 16.340695 0.190476 0.02 -0.368276 34 8 941 214 60 60 0 0 AA 11.423438 38 0 1034 0 KEEP + Atp6v1b1 NO B[a]P_1 chr6 85657454 85657454 G A exonic Gm4477 stopgain SNV NM_001253910:c.C397T:p.Q133X exonic LOC100504710 stopgain SNV uc009cqa.1:c.C397T:p.Q133X exonic ENSMUSG00000089694 stopgain SNV ENSMUST00000160534:c.C397T:p.Q133X 6qC3 "Score=0.97942;Name=No.93982,chr6:85697992" NA chr6 85657454 TCTxCAA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 218 0 1 63.974257 0.245902 0.02 1.921895 92 30 2501 792 57 57 0 0 GG 21.33449 71 0 1955 0 KEEP - Gm4477 NO B[a]P_1 chr6 87700636 87700636 G C exonic Efcc1 nonsynonymous SNV NM_001159697:c.G1076C:p.R359P exonic Ccdc48 nonsynonymous SNV uc012eoo.1:c.G1076C:p.R359P exonic ENSMUSG00000068263 nonsynonymous SNV ENSMUST00000032132:c.G1076C:p.R359P 6qD1 NA NA chr6 87700636 TCCxCTC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 120 0 0 29.20782 0.224138 0.02 1.186881 45 13 1144 364 60 60 0 0 GG 13.478848 45 0 1131 0 KEEP + Efcc1 NO B[a]P_1 chr6 87844100 87844100 A G exonic Copg1 nonsynonymous SNV NM_017477:c.A803G:p.Y268C exonic Copg nonsynonymous SNV uc009cug.1:c.A803G:p.Y268C exonic ENSMUSG00000030058 nonsynonymous SNV ENSMUST00000113607:c.A803G:p.Y268C 6qD1 NA NA chr6 87844100 TGTxTGA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 95 0 0 10.746054 0.113208 0.02 1.230625 47 6 1224 160 60 60 0 0 AA 9.619328 32 0 830 0 KEEP + Copg1 NO B[a]P_1 chr6 88434407 88434407 G T exonic Ruvbl1 synonymous SNV NM_019685:c.G759T:p.G253G exonic Ruvbl1 synonymous SNV uc009cvh.1:c.G759T:p.G253G exonic ENSMUSG00000030079 synonymous SNV ENSMUST00000032165:c.G759T:p.G253G 6qD1 NA NA chr6 88434407 TGGxCAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 103 0 0 11.658416 0.136364 0.02 -0.385831 38 6 1058 164 60 60 0 0 GG 12.931833 43 0 1177 0 KEEP + Ruvbl1 YES B[a]P_1 chr6 90259436 90259436 G C exonic Chst13 stopgain SNV NM_027928:c.C537G:p.Y179X exonic Chst13 stopgain SNV uc012eov.1:c.C537G:p.Y179X exonic ENSMUSG00000056643 stopgain SNV ENSMUST00000070890:c.C537G:p.Y179X 6qD1 NA NA chr6 90259436 GCGxTAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984042 0.984161 0.999879 92 0 0 15.721348 0.137931 0.02 1.186652 50 8 1390 220 60 60 0 0 GG 6.615844 22 0 596 0 KEEP - Chst13 NO B[a]P_1 chr6 90299089 90299089 C A exonic Uroc1 synonymous SNV NM_144940:c.C1329A:p.S443S exonic Uroc1 synonymous SNV uc009cxc.2:c.C1329A:p.S443S exonic ENSMUSG00000034456 synonymous SNV ENSMUST00000046128:c.C1329A:p.S443S 6qD1 NA NA chr6 90299089 CTCxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 80 0 0 22.704928 0.25 0.02 -0.350755 30 10 842 277 60 60 0 0 CC 10.226582 34 0 943 0 KEEP + Uroc1 YES B[a]P_1 chr6 90424170 90424170 C T exonic Klf15 nonsynonymous SNV NM_023184:c.C1136T:p.P379L exonic Klf15 nonsynonymous SNV uc009cxk.1:c.C1136T:p.P379L exonic ENSMUSG00000030087 nonsynonymous SNV ENSMUST00000032174:c.C1136T:p.P379L 6qD1 NA NA chr6 90424170 AGCxGTA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996722 0.996724 0.999998 113 2 0 35.501222 0.228571 0.02 1.081643 54 16 1406 442 60 60 0 0 CC 9.856802 33 0 831 0 KEEP + Klf15 NO B[a]P_1 chr6 90527766 90527766 G T intronic Aldh1l1 NA NA intronic Aldh1l1 NA NA intronic ENSMUSG00000030088 NA NA 6qD1 NA NA chr6 90527766 GCTxTGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351306 0.353947 0.99254 35 0 0 11.731208 0.263158 0.02 -0.166596 14 5 390 141 60 60 0 0 GG 2.707197 9 0 254 0 KEEP + Aldh1l1 YES B[a]P_1 chr6 90627967 90627967 T G intronic Iqsec1 NA NA intronic Iqsec1 NA NA intronic ENSMUSG00000034312 NA NA 6qD1 NA NA chr6 90627967 GCAxGTC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 91 0 0 16.077917 0.16 0.02 -0.438403 42 8 1146 218 60 60 0 0 TT 9.021316 30 0 800 0 KEEP - Iqsec1 NO B[a]P_1 chr6 9197718 9197718 C T exonic Nxph1 nonsynonymous SNV NM_008751:c.C688T:p.L230F exonic Nxph1 nonsynonymous SNV uc009ayc.1:c.C688T:p.L230F exonic ENSMUSG00000046178 nonsynonymous SNV ENSMUST00000060369:c.C688T:p.L230F 6qA1 NA NA chr6 9197718 TGGxTCT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 148 0 0 7.979872 0.0625 0.02 0.895821 75 5 2105 137 60 60 0 0 CC 14.137202 47 0 1314 0 KEEP + Nxph1 NO B[a]P_1 chr6 94557413 94557413 C T exonic Lrig1 synonymous SNV NM_008377:c.G2643A:p.P881P exonic Lrig1 synonymous SNV uc009czu.1:c.G2643A:p.P881P exonic ENSMUSG00000030029 synonymous SNV ENSMUST00000032105:c.G2643A:p.P881P 6qD2 NA NA chr6 94557413 GCTxGGG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 161 0 0 27.01526 0.171053 0.02 0.931462 63 13 1541 359 60 60 0 0 CC 20.727162 69 0 1693 0 KEEP - Lrig1 NO B[a]P_1 chr6 98188112 98188112 C A exonic Gm765 nonsynonymous SNV NM_001128092:c.G543T:p.M181I exonic Gm765 nonsynonymous SNV uc012epp.1:c.G543T:p.M181I exonic ENSMUSG00000090667 nonsynonymous SNV ENSMUST00000164491:c.G543T:p.M181I 6qD3 NA NA chr6 98188112 CTCxATG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717238 0.717315 0.999892 60 1 0 10.242024 0.16129 0.02 -0.271786 26 5 716 138 60 60 0 0 CC 6.918503 23 0 648 0 KEEP - Gm765 YES B[a]P_1 chr7 104100279 104100279 G T UTR5 Nars2 NA NA exonic AK032194 nonsynonymous SNV uc009iiv.1:c.C37A:p.L13I ncRNA_exonic ENSMUSG00000085560 NA NA 7qE1 NA NA chr7 104100279 GTAxCCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 148 2 0 9.627416 0.075 0.02 0.887107 74 6 2051 160 60 60 0 0 GG 16.820741 56 0 1543 0 KEEP - Nars2 YES B[a]P_1 chr7 104606737 104606737 G T exonic Kctd14 nonsynonymous SNV NM_001010826:c.G688T:p.V230F exonic Kctd14 nonsynonymous SNV uc009ijf.2:c.G688T:p.V230F exonic ENSMUSG00000051727 nonsynonymous SNV ENSMUST00000050732:c.G688T:p.V230F 7qE1 NA NA chr7 104606737 TTTxTCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739203 0.739671 0.999366 55 0 0 20.741427 0.28125 0.02 -0.280427 23 9 567 247 60 60 0 0 GG 5.10769 17 0 462 0 KEEP + Kctd14 YES B[a]P_1 chr7 105863999 105863999 A T exonic Prkrir nonsynonymous SNV NM_028410:c.A863T:p.E288V exonic Prkrir nonsynonymous SNV uc009ikt.1:c.A863T:p.E288V exonic ENSMUSG00000030753 nonsynonymous SNV ENSMUST00000033009:c.A863T:p.E288V 7qE2 NA NA chr7 105863999 AGGxGTT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 173 0 0 9.540996 0.067416 0.02 0.914786 83 6 2333 162 60 60 0 0 AA 18.317928 61 0 1655 0 KEEP + Prkrir NO B[a]P_1 chr7 105995848 105995848 A T exonic Wnt11 nonsynonymous SNV NM_009519:c.A484T:p.S162C exonic Wnt11 nonsynonymous SNV uc009ikx.2:c.A484T:p.S162C exonic ENSMUSG00000015957 nonsynonymous SNV ENSMUST00000167303:c.A484T:p.S162C 7qE2 NA NA chr7 105995848 CTCxGCT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 109 0 0 32.180209 0.220588 0.02 1.098945 53 15 1499 406 60 60 0 0 AA 11.429824 38 0 1055 0 KEEP + Wnt11 NO B[a]P_1 chr7 107172339 107172339 A T intronic Chrdl2 NA NA intronic Chrdl2 NA NA intronic ENSMUSG00000030732 NA NA 7qE2 NA NA chr7 107172339 CCAxTCT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 245 0 0 62.087828 0.264151 0.02 2.265339 78 28 2120 753 60 60 0 0 AA 33.983552 113 0 3102 0 KEEP + Chrdl2 NO B[a]P_1 chr7 107177810 107177810 G T exonic Chrdl2 stopgain SNV NM_133709:c.G1057T:p.E353X exonic Chrdl2 stopgain SNV uc009imi.2:c.G1057T:p.E353X exonic ENSMUSG00000030732 stopgain SNV ENSMUST00000032977:c.G1057T:p.E353X 7qE2 NA NA chr7 107177810 CTGxAGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 140 0 0 55.430297 0.338028 0.02 0.957571 47 24 1311 637 60 60 0 0 GG 14.138685 47 0 1340 0 KEEP + Chrdl2 YES B[a]P_1 chr7 108653221 108653221 C A exonic Pde2a nonsynonymous SNV NM_001143849:c.C1460A:p.T487K exonic Pde2a nonsynonymous SNV uc009iot.2:c.C1460A:p.T487K exonic ENSMUSG00000030653 nonsynonymous SNV ENSMUST00000032889:c.C1424A:p.T475K 7qE3 NA NA chr7 108653221 GCAxGCG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 136 0 0 9.129137 0.104167 0.02 1.036239 43 5 1167 137 60 60 0 0 CC 14.436951 48 0 1330 0 KEEP + Pde2a YES B[a]P_1 chr7 109224320 109224320 G T exonic Trpc2 nonsynonymous SNV NM_011644:c.G197T:p.G66V exonic Trpc2 nonsynonymous SNV uc009iqk.1:c.G197T:p.G66V exonic ENSMUSG00000070425 nonsynonymous SNV ENSMUST00000106951:c.G197T:p.G66V 7qE3 NA NA chr7 109224320 GTGxCTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 228 0 0 47.705123 0.201835 0.02 2.435109 87 22 2394 610 60 60 0 0 GG 25.230458 84 0 2306 0 KEEP + Trpc2 YES B[a]P_1 chr7 110076906 110076906 G T exonic Olfr572 nonsynonymous SNV NM_147089:c.G763T:p.V255L exonic Olfr572 nonsynonymous SNV uc009isu.1:c.G763T:p.V255L exonic ENSMUSG00000073963 nonsynonymous SNV ENSMUST00000098214:c.G763T:p.V255L 7qE3 NA NA chr7 110076906 TATxTGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 182 0 0 36.643891 0.204819 0.02 0.967465 66 17 1798 468 60 60 0 0 GG 25.269635 84 0 2411 0 KEEP + Olfr572 YES B[a]P_1 chr7 110335183 110335183 C A exonic Olfr592 nonsynonymous SNV NM_207556:c.C67A:p.L23M exonic Olfr592 nonsynonymous SNV uc009ith.1:c.C67A:p.L23M exonic ENSMUSG00000073956 nonsynonymous SNV ENSMUST00000098207:c.C67A:p.L23M 7qE3 NA NA chr7 110335183 GGTxTGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522093 0.522161 0.999869 55 0 0 7.416412 0.166667 0.02 -0.210451 20 4 570 102 60 60 0 0 CC 6.305193 21 0 581 0 KEEP + Olfr592 YES B[a]P_1 chr7 110494895 110494895 C A exonic Olfr600 synonymous SNV NM_147046:c.G546T:p.A182A exonic Olfr600 synonymous SNV uc009ito.1:c.G546T:p.A182A exonic ENSMUSG00000045540 synonymous SNV ENSMUST00000056222:c.G546T:p.A182A 7qE3 NA NA chr7 110494895 GTAxGCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 121 0 0 28.085478 0.206349 0.02 1.143223 50 13 1198 358 60 60 0 0 CC 15.023155 50 0 1240 0 KEEP - Olfr600 YES B[a]P_1 chr7 110809059 110809059 C A exonic Olfr623 nonsynonymous SNV NM_147122:c.G704T:p.R235L exonic Olfr623 nonsynonymous SNV uc009iug.2:c.G704T:p.R235L exonic ENSMUSG00000055124 nonsynonymous SNV ENSMUST00000068531:c.G704T:p.R235L 7qE3 NA NA chr7 110809059 GCCxGCT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 192 0 0 30.400335 0.17284 0.02 0.985567 67 14 1659 399 60 60 0 0 CC 26.439299 88 0 2186 0 KEEP - Olfr623 YES B[a]P_1 chr7 111160809 111160809 C G exonic Olfr639 nonsynonymous SNV NM_147084:c.G406C:p.A136P exonic Olfr639 nonsynonymous SNV uc009ivc.1:c.G406C:p.A136P exonic ENSMUSG00000066263 nonsynonymous SNV ENSMUST00000084801:c.G361C:p.A121P 7qE3 NA NA chr7 111160809 TGGxTGT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 161 0 0 60.4803 0.292135 0.02 0.89832 63 26 1728 714 60 60 0 0 CC 16.243419 54 0 1523 0 KEEP - Olfr639 NO B[a]P_1 chr7 111289915 111289915 G A exonic Ubqln3 nonsynonymous SNV NM_198623:c.C1481T:p.T494I exonic Ubqln3 nonsynonymous SNV uc009ivk.1:c.C1481T:p.T494I exonic ENSMUSG00000051618 nonsynonymous SNV ENSMUST00000057254:c.C1481T:p.T494I 7qE3 NA NA chr7 111289915 TTTxTGC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865632 0.865745 0.999869 66 0 0 6.91619 0.102564 0.02 -0.341957 35 4 954 106 60 60 0 0 GG 6.311788 21 0 572 0 KEEP - Ubqln3 NO B[a]P_1 chr7 111290604 111290604 G T exonic Ubqln3 synonymous SNV NM_198623:c.C792A:p.P264P exonic Ubqln3 synonymous SNV uc009ivk.1:c.C792A:p.P264P exonic ENSMUSG00000051618 synonymous SNV ENSMUST00000057254:c.C792A:p.P264P 7qE3 NA NA chr7 111290604 CATxGGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693229 0.693668 0.999366 47 0 0 15.864765 0.233333 0.02 -0.263006 23 7 633 196 60 60 0 0 GG 5.113757 17 0 480 0 KEEP - Ubqln3 YES B[a]P_1 chr7 112204866 112204866 T G exonic Olfr677 synonymous SNV NM_146358:c.T105G:p.L35L exonic Olfr677 synonymous SNV uc009ixl.1:c.T105G:p.L35L exonic ENSMUSG00000073914 synonymous SNV ENSMUST00000098161:c.T105G:p.L35L 7qE3 NA NA chr7 112204866 TCTxGTG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 151 0 0 25.442445 0.181818 0.02 1.098943 54 12 1496 333 60 60 0 0 TT 18.9473 63 0 1720 0 KEEP + Olfr677 NO B[a]P_1 chr7 112554547 112554547 G C exonic Cnga4 nonsynonymous SNV NM_001033317:c.G823C:p.A275P exonic Cnga4 nonsynonymous SNV uc012frn.1:c.G514C:p.A172P exonic ENSMUSG00000030897 nonsynonymous SNV ENSMUST00000033187:c.G823C:p.A275P 7qE3 NA NA chr7 112554547 ACGxCAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999997 82 0 0 16.520593 0.170213 0.02 -0.411123 39 8 1052 220 60 60 0 0 GG 9.323673 31 0 850 0 KEEP + Cnga4 NO B[a]P_1 chr7 112862262 112862262 A C intergenic "Timm10b(dist=71903),Rrp8(dist=17982)" NA NA intergenic "Dnhd1(dist=20077),Rrp8(dist=17982)" NA NA exonic ENSMUSG00000030882 nonsynonymous SNV ENSMUST00000145988:c.A11516C:p.K3839T 7qE3 NA NA chr7 112862262 AGAxGCA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760877 0.760887 0.999988 67 0 0 14.881621 0.242424 0.02 -0.289323 25 8 708 190 60 60 0 0 AA 8.121577 27 0 757 0 KEEP NA Timm10b NO B[a]P_1 chr7 112902547 112902547 G T exonic Dchs1 synonymous SNV NM_001162943:c.C9301A:p.R3101R exonic Dchs1 synonymous SNV uc009izh.2:c.C9301A:p.R3101R exonic ENSMUSG00000036862 synonymous SNV ENSMUST00000078482:c.C9301A:p.R3101R 7qE3 NA NA chr7 112902547 CTCxGTA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967423 0.967425 0.999998 101 0 0 31.57145 0.285714 0.02 1.339059 35 14 825 376 60 60 0 0 GG 9.780425 33 0 773 0 KEEP - Dchs1 YES B[a]P_1 chr7 112911843 112911843 C A exonic Dchs1 nonsynonymous SNV NM_001162943:c.G3761T:p.G1254V exonic Dchs1 nonsynonymous SNV uc009izh.2:c.G3761T:p.G1254V exonic ENSMUSG00000036862 nonsynonymous SNV ENSMUST00000078482:c.G3761T:p.G1254V 7qE3 NA NA chr7 112911843 GAGxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941738 0.941741 0.999997 77 0 0 24.445835 0.234043 0.02 -0.412108 36 11 989 303 60 60 0 0 CC 8.702036 29 0 778 0 KEEP - Dchs1 YES B[a]P_1 chr7 114100063 114100063 C A exonic Olfr6 nonsynonymous SNV NM_206897:c.G386T:p.R129L exonic Olfr6 nonsynonymous SNV uc009jao.1:c.G386T:p.R129L exonic ENSMUSG00000036647 nonsynonymous SNV ENSMUST00000040983:c.G386T:p.R129L 7qE3 NA NA chr7 114100063 TAGxGAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 102 1 0 27.335605 0.230769 0.02 1.230876 40 12 955 338 60 60 0 0 CC 11.697829 39 0 942 0 KEEP - Olfr6 YES B[a]P_1 chr7 11577019 11577019 C A intergenic "Zscan4b(dist=86620),Zscan4c(dist=14075)" NA NA intergenic "Zscan4b(dist=86620),Zscan4c(dist=14075)" NA NA intergenic "ENSMUSG00000076224(dist=33158),ENSMUSG00000054272(dist=14052)" NA NA 7qA1 "Score=0.98721;Name=No.98093,chr7:11813592" NA chr7 11577019 CAAxTCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 259 1 34 60.665278 0.254717 0.02 2.559264 79 27 2226 739 46 57 0 0 CC 29.469234 98 0 2747 0 KEEP NA Zscan4b YES B[a]P_1 chr7 116688716 116688716 C G exonic St5 nonsynonymous SNV NM_029811:c.G244C:p.E82Q exonic St5 nonsynonymous SNV uc009jdv.1:c.G244C:p.E82Q exonic ENSMUSG00000031024 nonsynonymous SNV ENSMUST00000084738:c.G244C:p.E82Q 7qE3 NA NA chr7 116688716 CCTxGTA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.352705 0.353947 0.99649 39 0 0 6.435718 0.157895 0.02 -0.166474 16 3 391 86 60 60 0 0 CC 4.505877 15 0 367 0 KEEP - St5 NO B[a]P_1 chr7 117126166 117126166 T A intronic Tmem41b NA NA intronic Tmem41b NA NA intronic ENSMUSG00000047554 NA NA 7qF1 NA NA chr7 117126166 TACxTAC T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 113 0 0 11.870621 0.157895 0.02 -0.333213 32 6 899 162 60 60 0 0 TT 18.348637 61 0 1709 0 KEEP - Tmem41b NO B[a]P_1 chr7 123280909 123280909 C A intronic Plekha7 NA NA intronic Plekha7 NA NA intronic ENSMUSG00000045659 NA NA 7qF1 NA NA chr7 123280909 GAAxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717307 0.717315 0.999988 60 0 0 9.941924 0.16129 0.02 -0.271838 26 5 730 135 60 70 0 0 CC 8.121443 27 0 756 0 KEEP - Plekha7 YES B[a]P_1 chr7 127422102 127422102 G T exonic Abca14 nonsynonymous SNV NM_026458:c.G3325T:p.V1109F exonic Abca14 nonsynonymous SNV uc009jmn.1:c.G3325T:p.V1109F exonic ENSMUSG00000062017 nonsynonymous SNV ENSMUST00000084640:c.G3325T:p.V1109F 7qF2 NA NA chr7 127422102 GGTxTCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 76 0 0 7.893869 0.148148 0.02 -0.236746 23 4 631 109 60 60 0 0 GG 9.926503 33 0 931 0 KEEP + Abca14 YES B[a]P_1 chr7 133016293 133016293 G T exonic D430042O09Rik synonymous SNV NM_001081022:c.G4617T:p.V1539V exonic D430042O09Rik synonymous SNV uc009jqo.1:c.G2547T:p.V849V exonic ENSMUSG00000032743 synonymous SNV ENSMUST00000071620:c.G4623T:p.V1541V 7qF3 NA NA chr7 133016293 CGTxCCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 137 0 0 43.922518 0.346154 0.02 1.239321 34 18 934 499 60 60 0 0 GG 15.774727 60 1 1697 21 KEEP + D430042O09Rik YES B[a]P_1 chr7 133919026 133919026 C G exonic Gdpd3 nonsynonymous SNV NM_024228:c.C878G:p.A293G exonic Gdpd3 nonsynonymous SNV uc009jso.1:c.C878G:p.A293G exonic ENSMUSG00000030703 nonsynonymous SNV ENSMUST00000032944:c.C878G:p.A293G 7qF3 NA NA chr7 133919026 GAGxCAA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 53 0 0 16.715364 0.35 0.02 -0.175376 13 7 367 190 60 60 0 0 CC 6.918047 23 0 639 0 KEEP + Gdpd3 NO B[a]P_1 chr7 134725670 134725670 A T exonic Phkg2 nonsynonymous SNV NM_026888:c.A590T:p.E197V exonic Phkg2 nonsynonymous SNV uc009jwc.2:c.A590T:p.E197V exonic ENSMUSG00000030815 nonsynonymous SNV ENSMUST00000121004:c.A590T:p.E197V 7qF3 NA NA chr7 134725670 CAGxGAT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 210 2 0 7.611165 0.063291 0.02 0.895839 74 5 2073 133 60 60 0 0 AA 30.052695 100 0 2774 0 KEEP + Phkg2 NO B[a]P_1 chr7 135214512 135214512 G T intronic Itgam NA NA intronic Itgam NA NA intronic ENSMUSG00000030786 NA NA 7qF3 NA NA chr7 135214512 GCTxCTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 191 1 0 12.450973 0.093333 0.02 0.843268 68 7 1875 192 70 60 0 0 GG 22.782908 76 0 2017 0 KEEP + Itgam YES B[a]P_1 chr7 135283729 135283729 T A exonic Itgax nonsynonymous SNV NM_021334:c.T1910A:p.V637E exonic Itgax nonsynonymous SNV uc009jyc.1:c.T1910A:p.V637E exonic ENSMUSG00000030789 nonsynonymous SNV ENSMUST00000033053:c.T1967A:p.V656E 7qF3 NA NA chr7 135283729 CTGxGTT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 101 0 0 12.333483 0.130435 0.02 -0.40331 40 6 1093 172 60 60 0 0 TT 13.529843 45 0 1204 0 KEEP + Itgax NO B[a]P_1 chr7 13567911 13567911 C A exonic Zfp446 nonsynonymous SNV NM_001168561:c.C934A:p.R312S exonic Zfp446 nonsynonymous SNV uc012eze.1:c.C478A:p.R160S exonic ENSMUSG00000033961 nonsynonymous SNV ENSMUST00000108536:c.C1159A:p.R387S 7qA1 NA NA chr7 13567911 CACxGCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992092 0.992094 0.999999 112 0 0 35.174492 0.238095 0.02 1.243124 48 15 1122 430 60 60 0 0 CC 10.514239 35 0 856 0 KEEP + Zfp446 YES B[a]P_1 chr7 13593545 13593545 C G exonic Zbtb45 nonsynonymous SNV NM_001024699:c.G134C:p.R45P exonic Zbtb45 nonsynonymous SNV uc009fez.1:c.G134C:p.R45P exonic ENSMUSG00000049600 nonsynonymous SNV ENSMUST00000051390:c.G134C:p.R45P 7qA1 NA NA chr7 13593545 GCAxGCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967299 0.967425 0.999869 79 0 0 17.426866 0.173077 0.02 1.338895 43 9 1027 235 60 60 0 0 CC 6.309197 21 0 517 0 KEEP - Zbtb45 NO B[a]P_1 chr7 140859312 140859312 T G exonic 2700050L05Rik synonymous SNV NM_178115:c.T3486G:p.S1162S exonic 2700050L05Rik synonymous SNV uc009kdc.2:c.T3486G:p.S1162S exonic ENSMUSG00000039990 synonymous SNV ENSMUST00000043609:c.T3483G:p.S1161S 7qF3 NA NA chr7 140859312 ATCxCGT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 166 0 0 28.685772 0.174419 0.02 0.843264 71 15 1999 388 60 60 0 0 TT 18.948467 63 0 1750 0 KEEP + 2700050L05Rik NO B[a]P_1 chr7 146744912 146744912 G T intronic Inpp5a NA NA intronic Inpp5a NA NA intronic ENSMUSG00000025477 NA NA 7qF4 NA NA chr7 146744912 CCTxGCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 129 0 0 117.201042 0.551282 0.02 1.011218 35 43 996 1200 60 60 0 0 GG 13.535247 45 0 1257 0 KEEP + Inpp5a YES B[a]P_1 chr7 147348734 147348734 C A exonic Olfr522 synonymous SNV NM_146952:c.G114T:p.V38V exonic Olfr522 synonymous SNV uc009khf.1:c.G114T:p.V38V exonic ENSMUSG00000051180 synonymous SNV ENSMUST00000050585:c.G114T:p.V38V 7qF4 NA NA chr7 147348734 AGTxACC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999999 78 0 0 12.103424 0.171429 0.02 -0.306915 29 6 815 162 60 60 0 0 CC 10.519852 35 0 991 0 KEEP - Olfr522 YES B[a]P_1 chr7 147724778 147724778 A C intergenic "Olfr536(dist=31561),Olfr538(dist=35276)" NA NA intergenic "Olfr536(dist=31561),Olfr538(dist=35276)" NA NA intergenic "ENSMUSG00000052508(dist=31561),ENSMUSG00000066125(dist=35252)" NA NA 7qF4 "Score=0.950637;Name=No.101644,chr7:147759519" NA chr7 147724778 ATGxCCG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 474 6 0 22.304671 0.074627 0.02 5.011113 186 15 5113 379 60 60 0 0 AA 62.178824 207 0 5559 0 KEEP NA Olfr536 NO B[a]P_1 chr7 148077902 148077902 C A intronic Psmd13 NA NA intronic Psmd13 NA NA ncRNA_exonic ENSMUSG00000083396 NA NA 7qF5 "Score=0.982492;Name=No.91577,chr5:40189342" NA chr7 148077902 AGAxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.81669 0.818465 0.997832 126 0 61 18.443165 0.222222 0.02 -0.315318 28 8 631 229 36 36 0 0 CC 17.720879 59 0 1450 0 KEEP + Psmd13 YES B[a]P_1 chr7 148293006 148293006 A G intronic Ano9 NA NA intronic Ano9 NA NA intronic ENSMUSG00000054662 NA NA 7qF5 NA NA chr7 148293006 CCAxGTG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.88875 0.888875 0.99986 64 0 0 7.52263 0.097561 0.02 -0.359511 37 4 1019 113 60 60 0 0 AA 5.714588 19 0 523 0 KEEP - Ano9 NO B[a]P_1 chr7 148528842 148528842 T C exonic Eps8l2 nonsynonymous SNV NM_133191:c.T118C:p.S40P exonic Eps8l2 nonsynonymous SNV uc009kkt.1:c.T118C:p.S40P exonic ENSMUSG00000025504 nonsynonymous SNV ENSMUST00000026577:c.T118C:p.S40P 7qF5 NA NA chr7 148528842 TACxCCA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 145 0 0 8.422538 0.066667 0.02 1.037766 70 5 1974 140 60 60 0 0 TT 13.230925 44 0 1213 0 KEEP + Eps8l2 NO B[a]P_1 chr7 148627104 148627104 C G exonic Lrdd nonsynonymous SNV NM_022654:c.G1159C:p.E387Q exonic Lrdd nonsynonymous SNV uc009klc.1:c.G1159C:p.E387Q exonic ENSMUSG00000025507 nonsynonymous SNV ENSMUST00000106005:c.G1159C:p.E387Q 7qF5 NA NA chr7 148627104 GCTxCAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997895 0.997898 0.999997 116 0 0 22.689904 0.152778 0.02 1.055077 61 11 1718 308 60 60 0 0 CC 9.62569 32 0 902 0 KEEP - Lrdd NO B[a]P_1 chr7 148932728 148932728 A C exonic Muc2 unknown UNKNOWN exonic Muc2 nonsynonymous SNV uc009kma.2:c.A4440C:p.E1480D exonic ENSMUSG00000025515 nonsynonymous SNV ENSMUST00000026590:c.A4869C:p.E1623D 7qF5 NA NA chr7 148932728 GGAxGTA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 86 0 0 6.584504 0.095238 0.02 -0.36829 38 4 1066 104 60 60 0 0 AA 8.722156 29 0 801 0 KEEP + Muc2 NO B[a]P_1 chr7 148940392 148940392 C A exonic Muc2 unknown UNKNOWN exonic Muc2 nonsynonymous SNV uc009kma.2:c.C6277A:p.Q2093K exonic ENSMUSG00000025515 nonsynonymous SNV ENSMUST00000026590:c.C6706A:p.Q2236K 7qF5 NA NA chr7 148940392 GCCxAGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 266 2 0 59.75621 0.210937 0.02 2.268193 101 27 2836 755 60 60 0 0 CC 31.556317 105 0 2942 0 KEEP + Muc2 YES B[a]P_1 chr7 149170340 149170340 A G exonic Brsk2 nonsynonymous SNV NM_001009929:c.A317G:p.D106G exonic Brsk2 nonsynonymous SNV uc009kmi.1:c.A134G:p.D45G exonic ENSMUSG00000053046 nonsynonymous SNV ENSMUST00000018971:c.A317G:p.D106G 7qF5 NA NA chr7 149170340 TCGxCTA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668451 0.668523 0.999892 62 0 0 8.259335 0.137931 0.02 -0.254302 25 4 696 114 60 60 0 0 AA 6.917342 23 0 627 0 KEEP + Brsk2 NO B[a]P_1 chr7 149268445 149268445 G C exonic Dusp8 nonsynonymous SNV NM_008748:c.C1312G:p.P438A exonic Dusp8 nonsynonymous SNV uc009kmn.1:c.C1312G:p.P438A exonic ENSMUSG00000037887 nonsynonymous SNV ENSMUST00000164254:c.C1312G:p.P438A 7qF5 NA NA chr7 149268445 AGGxCAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963657 0.963774 0.999879 82 2 0 9.389594 0.098039 0.02 1.248023 46 5 1287 141 60 60 0 0 GG 6.611889 22 0 588 0 KEEP - Dusp8 NO B[a]P_1 chr7 149361509 149361509 C A exonic Krtap5-2 nonsynonymous SNV NM_027844:c.G338T:p.G113V intronic Krtap5-2 NA NA exonic ENSMUSG00000054759 nonsynonymous SNV ENSMUST00000168842:c.G278T:p.G93V 7qF5 "Score=0.957631;Name=No.101652,chr7:149349971" NA chr7 149361509 GAGxCAC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 83 0 0 12.045704 0.162162 0.02 -0.324431 31 6 859 163 60 60 0 0 CC 9.611593 32 0 855 0 KEEP - Krtap5-2 YES B[a]P_1 chr7 149839806 149839806 T G exonic Igf2 nonsynonymous SNV NM_001122736:c.A458C:p.K153T exonic Igf2 nonsynonymous SNV uc009kod.2:c.A458C:p.K153T exonic ENSMUSG00000048583 nonsynonymous SNV ENSMUST00000000033:c.A458C:p.K153T 7qF5 NA NA chr7 149839806 CGTxTGG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 235 2 0 17.234653 0.092593 0.02 2.542359 98 10 2664 269 60 60 0 0 TT 25.858465 90 1 2418 10 KEEP - Igf2 NO B[a]P_1 chr7 150082544 150082544 G T exonic Th nonsynonymous SNV NM_009377:c.C534A:p.H178Q exonic Th nonsynonymous SNV uc009koi.1:c.C534A:p.H178Q exonic ENSMUSG00000000214 nonsynonymous SNV ENSMUST00000105929:c.C249A:p.H83Q 7qF5 NA NA chr7 150082544 GTGxTGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 131 1 0 41.709357 0.283582 0.02 1.010347 48 19 1283 500 60 60 0 0 GG 12.632215 42 0 1160 0 KEEP - Th YES B[a]P_1 chr7 150154385 150154385 A T exonic Ascl2 nonsynonymous SNV NM_008554:c.T230A:p.L77H exonic Ascl2 nonsynonymous SNV uc009koj.2:c.T230A:p.L77H exonic ENSMUSG00000009248 nonsynonymous SNV ENSMUST00000009392:c.T230A:p.L77H 7qF5 NA NA chr7 150154385 ATGxGTC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760795 0.760887 0.999879 59 0 0 12.471235 0.181818 0.02 -0.289385 27 6 764 164 60 60 0 0 AA 6.607743 22 0 585 0 KEEP - Ascl2 NO B[a]P_1 chr7 150683217 150683217 G T exonic Slc22a18 synonymous SNV NM_001042760:c.G927T:p.A309A exonic Slc22a18 synonymous SNV uc009kph.1:c.G552T:p.A184A exonic ENSMUSG00000000154 synonymous SNV ENSMUST00000168752:c.G576T:p.A192A 7qF5 NA NA chr7 150683217 GGCxCTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 144 4 0 30.180181 0.177215 0.02 1.004318 65 14 1517 395 60 60 0 0 GG 14.119744 47 0 1160 0 KEEP + Slc22a18 YES B[a]P_1 chr7 16767838 16767838 G T intronic Meis3 NA NA intronic Meis3 NA NA intronic ENSMUSG00000041420 NA NA 7qA2 NA NA chr7 16767838 GCCxACG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851864 0.851984 0.999859 64 0 0 15.34223 0.194444 0.02 -0.333174 29 7 798 197 70 70 0 0 GG 5.404724 18 0 479 0 KEEP + Meis3 YES B[a]P_1 chr7 19145941 19145941 G A exonic Psg27 synonymous SNV NM_001037168:c.C889T:p.L297L exonic Psg27 synonymous SNV uc009fjn.1:c.C889T:p.L297L exonic ENSMUSG00000070797 synonymous SNV ENSMUST00000094794:c.C889T:p.L297L 7qA3 NA NA chr7 19145941 GCAxATT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 225 1 0 35.070581 0.175258 0.02 0.844607 80 17 2269 465 60 60 0 0 GG 30.985653 103 0 2954 0 KEEP - Psg27 NO B[a]P_1 chr7 19399883 19399883 G C exonic Psg17 nonsynonymous SNV NM_007677:c.C1311G:p.C437W exonic Psg17 nonsynonymous SNV uc009fjs.1:c.C1311G:p.C437W exonic ENSMUSG00000004540 nonsynonymous SNV ENSMUST00000004655:c.C1311G:p.C437W 7qA3 NA NA chr7 19399883 TTGxCAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 545 2 0 54.810792 0.122807 0.02 4.978148 200 28 5602 783 60 60 0 0 GG 75.18176 250 0 6936 0 KEEP - Psg17 NO B[a]P_1 chr7 19955992 19955992 G T exonic Ppp1r13l nonsynonymous SNV NM_001010836:c.G886T:p.G296W exonic Ppp1r13l nonsynonymous SNV uc009flo.1:c.G886T:p.G296W exonic ENSMUSG00000040734 nonsynonymous SNV ENSMUST00000047621:c.G886T:p.G296W 7qA3 NA NA chr7 19955992 CTGxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.756619 0.760887 0.994391 48 0 0 12.971288 0.181818 0.02 -0.289351 27 6 746 169 60 60 0 0 GG 3.910137 13 0 360 0 KEEP + Ppp1r13l YES B[a]P_1 chr7 20274893 20274893 T A UTR3 Apoc1 NA NA UTR3 Apoc1 NA NA UTR3 ENSMUSG00000040564 NA NA 7qA3 NA NA chr7 20274893 ATGxCCT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 132 0 0 37.857074 0.21519 0.02 1.002918 62 17 1662 476 60 60 0 0 TT 11.727896 39 0 1051 0 KEEP - Apoc1 NO B[a]P_1 chr7 20282355 20282355 C G exonic Apoe nonsynonymous SNV NM_009696:c.G310C:p.G104R exonic Apoe nonsynonymous SNV uc009fmx.2:c.G310C:p.G104R exonic ENSMUSG00000002985 nonsynonymous SNV ENSMUST00000172808:c.G277C:p.G93R 7qA3 NA NA chr7 20282355 TGCxCAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992091 0.992094 0.999997 102 0 0 28.810583 0.225806 0.02 1.143286 48 14 1318 365 60 60 0 0 CC 9.270388 31 0 805 0 KEEP - Apoe NO B[a]P_1 chr7 24058755 24058755 T C exonic Gm6902 nonsynonymous SNV NM_001270494:c.A365G:p.E122G exonic Gm5156 nonsynonymous SNV uc012fet.1:c.A344G:p.E115G exonic ENSMUSG00000074295 nonsynonymous SNV ENSMUST00000098709:c.A365G:p.E122G 7qA3 "Score=0.99676;Name=No.99974,chr7:22455019" NA chr7 24058755 GTCxCGC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 638 26 195 12.715372 0.046784 0.02 3.586097 163 8 4617 229 36 33 0 0 TT 79.980799 266 0 7385 0 KEEP - Gm6902 NO B[a]P_1 chr7 25563368 25563368 C A exonic Ceacam10 nonsynonymous SNV NM_007675:c.C288A:p.S96R exonic Ceacam10 nonsynonymous SNV uc009fqm.2:c.C288A:p.S96R exonic ENSMUSG00000054169 nonsynonymous SNV ENSMUST00000038069:c.C288A:p.S96R 7qA3 "Score=0.908114;Name=No.100267,chr7:26260578" NA chr7 25563368 CAGxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 116 1 0 30.839496 0.270833 0.02 -0.420335 35 13 874 368 60 60 0 0 CC 16.479376 55 0 1356 0 KEEP + Ceacam10 YES B[a]P_1 chr7 25657586 25657586 A G exonic Dmrtc2 nonsynonymous SNV NM_027732:c.A86G:p.E29G exonic Dmrtc2 nonsynonymous SNV uc009fqp.2:c.A86G:p.E29G exonic ENSMUSG00000011349 nonsynonymous SNV ENSMUST00000011493:c.A86G:p.E29G 7qA3 NA NA chr7 25657586 CAGxGCT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963762 0.963774 0.999988 87 0 0 9.688391 0.098039 0.02 1.248003 46 5 1287 144 60 60 0 0 AA 8.119328 27 0 745 0 KEEP + Dmrtc2 NO B[a]P_1 chr7 26555259 26555259 G C exonic Axl nonsynonymous SNV NM_001190975:c.C1206G:p.S402R exonic Axl nonsynonymous SNV uc012ffy.1:c.C1206G:p.S402R exonic ENSMUSG00000002602 nonsynonymous SNV ENSMUST00000085948:c.C1470G:p.S490R 7qA3 NA NA chr7 26555259 CCGxCTG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 268 2 0 29.903461 0.141509 0.02 2.460906 91 15 2575 415 60 60 0 0 GG 33.379366 111 0 3068 0 KEEP - Axl NO B[a]P_1 chr7 28193311 28193311 C G exonic Sptbn4 nonsynonymous SNV NM_032610:c.G2704C:p.A902P exonic Spnb4 nonsynonymous SNV uc009fwb.1:c.G61C:p.A21P exonic ENSMUSG00000011751 nonsynonymous SNV ENSMUST00000011895:c.G2704C:p.A902P 7qA3 NA NA chr7 28193311 TGGxCAG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851974 0.851984 0.999988 77 0 0 12.569456 0.157895 0.02 -0.333206 32 6 883 169 60 60 0 0 CC 8.070642 27 0 709 0 KEEP - Sptbn4 NO B[a]P_1 chr7 28231076 28231076 T A intronic Sptbn4 NA NA intronic Spnb4 NA NA intronic ENSMUSG00000011751 NA NA 7qA3 NA NA chr7 28231076 TACxTGG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668436 0.668523 0.999869 56 0 0 9.701078 0.172414 0.02 -0.254258 24 5 657 131 60 60 0 0 TT 6.314397 21 0 573 0 KEEP - Sptbn4 NO B[a]P_1 chr7 28949467 28949467 T A exonic 9530053A07Rik stopgain SNV NM_001164655:c.T7644A:p.C2548X exonic 9530053A07Rik stopgain SNV uc009fxx.2:c.T7644A:p.C2548X exonic ENSMUSG00000078776 stopgain SNV ENSMUST00000150948:c.T7644A:p.C2548X 7qA3 "Score=0.948718;Name=No.100315,chr7:28905155" NA chr7 28949467 CTGxGGA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 185 2 0 80.267853 0.323529 0.02 2.496342 69 33 1850 924 60 60 0 0 TT 20.113379 67 0 1782 0 KEEP + 9530053A07Rik NO B[a]P_1 chr7 29062981 29062981 G A exonic Eid2b nonsynonymous SNV NM_001177427:c.G182A:p.G61D exonic Eid2b nonsynonymous SNV uc012fgp.1:c.G182A:p.G61D exonic ENSMUSG00000070705 nonsynonymous SNV ENSMUST00000094651:c.G182A:p.G61D 7qA3 NA NA chr7 29062981 CCGxCGT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 175 0 0 45.056904 0.216495 0.02 0.838638 76 21 2092 570 60 60 0 0 GG 18.016451 60 0 1639 0 KEEP + Eid2b NO B[a]P_1 chr7 29668300 29668300 C A intronic Capn12 NA NA intronic Capn12 NA NA intronic ENSMUSG00000054083 NA NA 7qA3 NA NA chr7 29668300 CTCxCAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 81 0 0 22.062411 0.238095 0.02 -0.368297 32 10 905 273 60 60 0 0 CC 9.325187 31 0 877 0 KEEP + Capn12 YES B[a]P_1 chr7 29956657 29956657 C G exonic Ggn nonsynonymous SNV NM_182694:c.C550G:p.P184A exonic Ggn nonsynonymous SNV uc009gba.1:c.C550G:p.P184A exonic ENSMUSG00000031493 nonsynonymous SNV ENSMUST00000071601:c.C442G:p.P148A 7qB1 NA NA chr7 29956657 CTGxCCC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.487793 0.490544 0.994391 42 0 0 16.602803 0.304348 0.02 -0.201654 16 7 439 194 60 60 0 0 CC 3.90982 13 0 358 0 KEEP + Ggn NO B[a]P_1 chr7 30964045 30964045 G T UTR3 Gm5113 NA NA UTR3 Gm5113 NA NA UTR3 ENSMUSG00000066647 NA NA 7qB1 NA NA chr7 30964045 CCAxGAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 49 0 0 8.215353 0.166667 0.02 -0.210448 20 4 555 110 60 60 0 0 GG 5.71543 19 0 538 0 KEEP + Gm5113 YES B[a]P_1 chr7 31017805 31017805 A T exonic Polr2i nonsynonymous SNV NM_027259:c.A151T:p.S51C exonic Polr2i nonsynonymous SNV uc009gdt.1:c.A151T:p.S51C exonic ENSMUSG00000019738 nonsynonymous SNV ENSMUST00000108192:c.A85T:p.S29C 7qB1 NA NA chr7 31017805 AACxGCT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 198 0 0 15.697474 0.088235 0.02 2.487218 93 9 2637 246 60 60 0 0 AA 23.153142 77 0 2132 0 KEEP + Polr2i NO B[a]P_1 chr7 31390170 31390170 C A exonic Upk1a nonsynonymous SNV NM_026815:c.G555T:p.W185C exonic Upk1a nonsynonymous SNV uc009gfj.1:c.G555T:p.W185C exonic ENSMUSG00000006313 nonsynonymous SNV ENSMUST00000006476:c.G555T:p.W185C 7qB1 NA NA chr7 31390170 GGGxCAC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851864 0.851984 0.99986 66 0 0 25.32671 0.289474 0.02 -0.332861 27 11 726 300 60 60 0 0 CC 5.645367 19 0 489 0 KEEP - Upk1a YES B[a]P_1 chr7 31443580 31443580 A C exonic Haus5 nonsynonymous SNV NM_027999:c.T1121G:p.L374R exonic Haus5 nonsynonymous SNV uc009gfs.2:c.T1121G:p.L374R exonic ENSMUSG00000078762 nonsynonymous SNV ENSMUST00000019697:c.T1121G:p.L374R 7qB1 NA NA chr7 31443580 AGAxGAT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999998 93 0 0 18.910293 0.208333 0.02 -0.420847 38 10 1064 248 60 60 0 0 AA 10.226228 34 0 940 0 KEEP - Haus5 NO B[a]P_1 chr7 31640548 31640548 C A exonic Ffar3 nonsynonymous SNV NM_001033316:c.G365T:p.R122L exonic Ffar3 nonsynonymous SNV uc009ggp.1:c.G365T:p.R122L exonic ENSMUSG00000019429 nonsynonymous SNV ENSMUST00000094583:c.G365T:p.R122L 7qB1 NA NA chr7 31640548 GGCxGGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 132 2 0 50.650701 0.305556 0.02 1.16301 50 22 1238 594 60 60 0 0 CC 12.021765 40 0 1025 0 KEEP - Ffar3 YES B[a]P_1 chr7 34880565 34880565 G C exonic Scgb1b30 synonymous SNV NM_001099330:c.G33C:p.G11G exonic Gm12776 synonymous SNV uc009gir.1:c.G33C:p.G11G exonic ENSMUSG00000078752 synonymous SNV ENSMUST00000108083:c.G33C:p.G11G 7qB1 NA NA chr7 34880565 CGGxGCT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999998 84 0 0 17.082101 0.243243 0.02 -0.324372 28 9 784 217 60 60 0 0 GG 9.924808 33 0 913 0 KEEP + Scgb1b30 NO B[a]P_1 chr7 35427005 35427005 C A exonic Kctd15 nonsynonymous SNV NM_146188:c.G515T:p.R172L exonic Kctd15 nonsynonymous SNV uc009gjf.1:c.G515T:p.R172L exonic ENSMUSG00000030499 nonsynonymous SNV ENSMUST00000108070:c.G515T:p.R172L 7qB1 NA NA chr7 35427005 ACCxGTA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899205 0.899314 0.999879 74 0 0 31.921815 0.309524 0.02 -0.36813 29 13 753 370 60 60 0 0 CC 6.61431 22 0 584 0 KEEP - Kctd15 YES B[a]P_1 chr7 38264962 38264962 T C exonic Zfp536 nonsynonymous SNV NM_172385:c.A3236G:p.K1079R exonic Zfp536 nonsynonymous SNV uc009gkk.1:c.A3236G:p.K1079R exonic ENSMUSG00000043456 nonsynonymous SNV ENSMUST00000063435:c.A47G:p.K16R 7qB2 NA NA chr7 38264962 AACxTCT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 209 1 0 19.103079 0.11236 0.02 0.888464 79 10 2227 279 60 60 0 0 TT 26.432838 88 0 2421 0 KEEP - Zfp536 NO B[a]P_1 chr7 4483357 4483357 G C exonic Dnaaf3 nonsynonymous SNV NM_001033548:c.C211G:p.P71A exonic 6030429G01Rik nonsynonymous SNV uc009exw.1:c.C211G:p.P71A exonic ENSMUSG00000055809 nonsynonymous SNV ENSMUST00000094897:c.C211G:p.P71A 7qA1 NA NA chr7 4483357 GAGxCCA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 138 0 0 12.227578 0.089744 0.02 1.011244 71 7 1988 191 60 60 0 0 GG 12.887456 43 0 1167 0 KEEP - Dnaaf3 NO B[a]P_1 chr7 46512762 46512762 G T ncRNA_exonic Gm21276 NA NA UTR3 Gm16387 NA NA UTR3 ENSMUSG00000074169 NA NA 7qB3 "Score=0.966137;Name=No.101127,chr7:46357456" NA chr7 46512762 CTGxCCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 169 1 2 10.449113 0.090909 0.02 0.984544 60 6 1626 163 60 60 0 0 GG 23.758951 79 0 2167 0 KEEP - Gm21276 YES B[a]P_1 chr7 4656732 4656732 G A exonic Brsk1 nonsynonymous SNV NM_001003920:c.G920A:p.R307H exonic Brsk1 nonsynonymous SNV uc009eye.1:c.G920A:p.R307H exonic ENSMUSG00000035390 nonsynonymous SNV ENSMUST00000048248:c.G920A:p.R307H 7qA1 NA NA chr7 4656732 TGCxTAG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 127 1 0 26.265232 0.178082 0.02 0.957728 60 13 1474 349 60 60 0 0 GG 11.349019 38 0 871 0 KEEP + Brsk1 NO B[a]P_1 chr7 48414541 48414541 G T intergenic "Gm4884(dist=113869),Gm5592(dist=125156)" NA NA intergenic "Gm4884(dist=113869),Gm5592(dist=125156)" NA NA downstream ENSMUSG00000078737 NA NA 7qB3 "Score=0.960073;Name=No.101182,chr7:48449098" NA chr7 48414541 AGCxTGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 210 0 13 37.169569 0.193182 0.02 0.871579 71 17 1704 478 60 60 0 0 GG 31.844599 106 0 2619 0 KEEP NA Gm4884 YES B[a]P_1 chr7 51607617 51607617 A C exonic Shank1 nonsynonymous SNV NM_001034115:c.A3389C:p.K1130T exonic Shank1 nonsynonymous SNV uc009gpe.2:c.A650C:p.K217T exonic ENSMUSG00000038738 nonsynonymous SNV ENSMUST00000107934:c.A3362C:p.K1121T 7qB4 NA NA chr7 51607617 AAAxGGG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996712 0.996724 0.999988 105 0 0 9.490228 0.085714 0.02 0.886242 64 6 1758 155 60 60 0 0 AA 8.120573 27 0 742 0 KEEP + Shank1 NO B[a]P_1 chr7 5172753 5172753 G T exonic Vmn1r57 nonsynonymous SNV NM_001166734:c.G674T:p.R225I exonic Vmn1r57 nonsynonymous SNV uc012exe.1:c.G674T:p.R225I exonic ENSMUSG00000091652 nonsynonymous SNV ENSMUST00000170780:c.G674T:p.R225I 7qA1 "Score=0.946163;Name=No.96122,chr7:5386969" NA chr7 5172753 CCAxAGC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 207 0 2 68.479509 0.376623 0.02 0.922171 48 29 1361 768 60 60 0 0 GG 30.077353 100 0 2855 0 KEEP + Vmn1r57 YES B[a]P_1 chr7 51995049 51995049 C A intronic Zfp473 NA NA intronic Zfp473 NA NA intronic ENSMUSG00000048012 NA NA 7qB4 NA NA chr7 51995049 GCCxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760854 0.760887 0.999957 69 0 0 15.336841 0.212121 0.02 -0.289374 26 7 730 194 70 60 0 0 CC 7.816712 26 0 709 0 KEEP - Zfp473 YES B[a]P_1 chr7 52115739 52115739 G C exonic Pnkp nonsynonymous SNV NM_021549:c.G751C:p.A251P exonic Pnkp nonsynonymous SNV uc009grh.1:c.G643C:p.A215P exonic ENSMUSG00000002963 nonsynonymous SNV ENSMUST00000085410:c.G670C:p.A224P 7qB4 NA NA chr7 52115739 GTGxCAA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 210 0 0 16.372943 0.085714 0.02 2.568007 96 9 2682 254 60 60 0 0 GG 18.321235 61 0 1675 0 KEEP + Pnkp NO B[a]P_1 chr7 52888229 52888229 C G exonic Rasip1 synonymous SNV NM_028544:c.C1785G:p.R595R exonic Rasip1 synonymous SNV uc009gwi.1:c.C1785G:p.R595R exonic ENSMUSG00000044562 synonymous SNV ENSMUST00000169608:c.C705G:p.R235R 7qB4 NA NA chr7 52888229 CCGxCTG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 355 2 0 32.726681 0.122302 0.02 2.351787 122 17 3353 470 60 60 1 0 CC 45.408986 151 0 4138 0 KEEP + Rasip1 NO B[a]P_1 chr7 53085398 53085398 A G exonic Grwd1 nonsynonymous SNV NM_153419:c.T422C:p.L141P exonic Grwd1 nonsynonymous SNV uc009gxj.2:c.T110C:p.L37P exonic ENSMUSG00000053801 nonsynonymous SNV ENSMUST00000098448:c.T110C:p.L37P 7qB4 NA NA chr7 53085398 TCCxGCT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 89 0 0 25.601471 0.295455 0.02 -0.385712 31 13 867 310 60 60 0 0 AA 11.429529 38 0 1053 0 KEEP - Grwd1 NO B[a]P_1 chr7 53197014 53197014 G T intronic Ccdc114 NA NA intronic Ccdc114 NA NA intronic ENSMUSG00000040189 NA NA 7qB4 NA NA chr7 53197014 CATxCCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.81835 0.818465 0.99986 60 0 0 20.178496 0.363636 0.02 -0.313717 14 8 332 226 60 60 0 0 GG 5.074782 17 0 414 0 KEEP + Ccdc114 YES B[a]P_1 chr7 53272834 53272834 C T intronic Abcc6 NA NA intronic Abcc6 NA NA intronic ENSMUSG00000030834 NA NA 7qB4 NA NA chr7 53272834 ACAxCTC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 62 0 0 15.581779 0.241379 0.02 -0.289335 22 7 591 192 60 60 0 0 CC 5.403883 18 0 473 0 KEEP - Abcc6 NO B[a]P_1 chr7 53272888 53272888 A G exonic Abcc6 synonymous SNV NM_018795:c.T636C:p.A212A exonic Abcc6 synonymous SNV uc009gya.1:c.T636C:p.A212A exonic ENSMUSG00000030834 synonymous SNV ENSMUST00000002850:c.T636C:p.A212A 7qB4 NA NA chr7 53272888 CTCxGCC A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.999859 55 0 0 9.554858 0.208333 0.02 -0.245515 19 5 543 125 60 60 0 0 AA 5.398317 18 0 478 0 KEEP - Abcc6 NO B[a]P_1 chr7 53317214 53317214 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53317214 GGGxACA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 153 0 0 28.787903 0.216667 0.02 1.055055 47 13 1347 362 70 70 0 0 GG 18.342384 61 0 1708 0 KEEP + Nomo1 NO B[a]P_1 chr7 53318441 53318441 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53318441 ATGxGTG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.999859 49 0 0 11.254935 0.2 0.02 -0.236756 20 5 556 143 60 60 0 0 GG 5.414035 18 0 498 0 KEEP + Nomo1 NO B[a]P_1 chr7 53323993 53323993 C T intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53323993 TCCxTTG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.581666 0.58293 0.997832 45 0 0 34.872526 0.5 0.02 -0.228002 13 13 369 365 60 60 0 0 CC 4.813261 16 0 459 0 KEEP + Nomo1 NO B[a]P_1 chr7 53362372 53362372 T A exonic Abcc8 synonymous SNV NM_011510:c.A4278T:p.S1426S exonic Abcc8 synonymous SNV uc009gyd.1:c.A2253T:p.S751S exonic ENSMUSG00000040136 synonymous SNV ENSMUST00000033123:c.A4278T:p.S1426S 7qB4 NA NA chr7 53362372 GCGxGAA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 96 2 0 10.364444 0.131579 0.02 -0.3946 33 5 908 144 60 60 0 0 TT 10.225011 34 0 917 0 KEEP - Abcc8 NO B[a]P_1 chr7 53379241 53379241 T C intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53379241 CAGxCCC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997896 0.997898 0.999999 118 0 0 77.566445 0.424658 0.02 1.055197 42 31 1149 844 60 60 0 0 TT 10.526153 35 0 953 0 KEEP - Abcc8 NO B[a]P_1 chr7 53435158 53435158 G A intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53435158 GCTxGGC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.289978 0.292001 0.993072 32 0 0 13.669254 0.352941 0.02 -0.149019 11 6 300 156 60 60 0 0 GG 3.308892 11 0 311 0 KEEP - Abcc8 NO B[a]P_1 chr7 53463142 53463142 G T intronic Ush1c NA NA intronic Ush1c NA NA intronic ENSMUSG00000030838 NA NA 7qB4 NA NA chr7 53463142 CTGxTTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 130 0 0 19.985036 0.16129 0.02 1.151622 52 10 1417 271 60 60 0 0 GG 15.335172 51 0 1399 0 KEEP - Ush1c YES B[a]P_1 chr7 53521359 53521359 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53521359 AAGxAGG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 45 0 0 7.981976 0.235294 0.02 -0.175344 13 4 362 101 60 60 0 0 CC 5.112895 17 0 479 0 KEEP + Otog NO B[a]P_1 chr7 53543464 53543464 C T exonic Otog synonymous SNV NM_013624:c.C5226T:p.I1742I exonic Otog synonymous SNV uc009gyk.2:c.C5226T:p.I1742I exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000164538:c.C5226T:p.I1742I 7qB4 NA NA chr7 53543464 CATxGAC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 59 2 0 36.362815 0.4375 0.02 -0.289131 18 14 471 392 60 60 0 0 CC 5.407814 18 0 455 0 KEEP + Otog NO B[a]P_1 chr7 53546277 53546277 G A intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53546277 GGGxCTC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 124 0 0 27.195429 0.19697 0.02 1.099343 53 13 1439 352 60 60 0 0 GG 8.793516 39 1 1068 27 KEEP + Otog NO B[a]P_1 chr7 53553863 53553863 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553863 ATGxATC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998198 0.9982 0.999997 114 0 0 27.082763 0.203125 0.02 0.948589 51 13 1411 349 60 60 0 0 CC 8.420207 28 0 768 0 KEEP + Otog NO B[a]P_1 chr7 53553865 53553865 T C intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553865 GCAxCCA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998693 0.998696 0.999997 116 0 0 30.074598 0.212121 0.02 1.028863 52 14 1413 382 60 60 0 0 TT 8.72042 29 0 784 0 KEEP + Otog NO B[a]P_1 chr7 53553867 53553867 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553867 ATCxACC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998693 0.998696 0.999997 117 0 0 33.502539 0.223881 0.02 1.128073 52 15 1427 418 60 60 0 0 CC 9.023407 30 0 837 0 KEEP + Otog NO B[a]P_1 chr7 53633192 53633192 C G intronic Myod1 NA NA intronic Myod1 NA NA intronic ENSMUSG00000009471 NA NA 7qB4 NA NA chr7 53633192 GTGxGTA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909006 0.909069 0.999931 79 0 0 34.476269 0.333333 0.02 -0.376777 28 14 668 394 60 60 0 0 CC 5.031958 24 1 567 20 KEEP + Myod1 NO B[a]P_1 chr7 53890970 53890970 A G intronic Sergef NA NA intronic Sergef NA NA intronic ENSMUSG00000030839 NA NA 7qB4 NA NA chr7 53890970 TCAxCAT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.487421 0.490544 0.993634 35 1 0 21.226495 0.409091 0.02 -0.201644 13 9 358 234 60 60 0 0 AA 3.607242 12 0 316 0 KEEP - Sergef NO B[a]P_1 chr7 53997787 53997787 G T intronic Saa1 NA NA intronic Saa1 NA NA intronic ENSMUSG00000074115 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:54006945" NA chr7 53997787 GGGxCCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 58 0 5 19.254435 0.380952 0.02 -0.184137 13 8 366 215 60 60 0 0 GG 6.918436 23 0 646 0 KEEP - Saa1 YES B[a]P_1 chr7 54008756 54008756 T A intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008756 TTTxGGG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 77 2 4 17.168622 0.235294 0.02 -0.350381 26 8 690 214 60 60 0 0 TT 9.023745 30 0 836 0 KEEP + Saa2 NO B[a]P_1 chr7 54008763 54008763 T C intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008763 TCAxGTT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999997 85 2 3 25.261578 0.292683 0.02 -0.412015 29 12 774 303 60 60 0 0 TT 9.006226 30 0 788 0 KEEP + Saa2 NO B[a]P_1 chr7 54028653 54028653 A G intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54028653 AATxCCA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 137 4 0 91.08298 0.514706 0.02 1.002191 33 35 857 948 60 70 0 0 AA 16.527518 55 0 1431 0 KEEP - Hps5 NO B[a]P_1 chr7 54032439 54032439 T C intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54032439 CAGxTTA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 56 1 0 18.680729 0.333333 0.02 -0.21041 16 8 441 215 60 60 0 0 TT 8.420536 28 0 765 0 KEEP - Hps5 NO B[a]P_1 chr7 54070838 54070838 A G intronic Gtf2h1 NA NA intronic Gtf2h1 NA NA intronic ENSMUSG00000006599 NA NA 7qB4 NA NA chr7 54070838 CTCxGGT A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 106 0 0 15.939094 0.222222 0.02 -0.324412 28 8 792 204 60 60 0 0 AA 14.125583 47 0 1302 0 KEEP + Gtf2h1 NO B[a]P_1 chr7 54104300 54104300 A G intronic Ldha NA NA intronic Ldha NA NA intronic ENSMUSG00000063229 NA NA 7qB4 NA NA chr7 54104300 AGAxTCA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 40 0 0 20.297726 0.421053 0.02 -0.166579 11 8 301 221 60 60 0 0 AA 5.411271 18 0 474 0 KEEP + Ldha NO B[a]P_1 chr7 54441140 54441140 A T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.T902A:p.L301Q 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441140 CACxGCT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 271 5 2 38.367018 0.166667 0.02 2.268006 90 18 2535 509 60 46 0 0 AA 29.474809 98 0 2697 0 KEEP - Mrgpra6 NO B[a]P_1 chr7 54441179 54441179 G T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.C863A:p.P288H 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441179 TCAxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 322 15 3 42.792947 0.140127 0.02 3.517836 135 22 3827 599 60 57 0 0 GG 29.167216 97 0 2750 0 KEEP - Mrgpra6 YES B[a]P_1 chr7 54441206 54441206 C T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.G836A:p.S279N 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441206 GCAxTCT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 299 14 5 31.986934 0.1125 0.02 3.339364 142 18 3940 478 60 60 0 0 CC 25.567853 85 0 2393 0 KEEP - Mrgpra6 NO B[a]P_1 chr7 54490319 54490319 C T exonic Mrgpra9 synonymous SNV NM_001177566:c.G966A:p.V322V exonic Mrgpra9 synonymous SNV uc012fla.1:c.G966A:p.V322V exonic ENSMUSG00000074111 synonymous SNV ENSMUST00000098436:c.G963A:p.V321V 7qB4 NA NA chr7 54490319 CTCxACC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 248 1 2 12.934927 0.09589 0.02 0.993697 66 7 1855 196 60 29 0 0 CC 40.294024 134 0 3797 0 KEEP - Mrgpra9 NO B[a]P_1 chr7 54490320 54490320 A G exonic Mrgpra9 nonsynonymous SNV NM_001177566:c.T965C:p.V322A exonic Mrgpra9 nonsynonymous SNV uc012fla.1:c.T965C:p.V322A exonic ENSMUSG00000074111 nonsynonymous SNV ENSMUST00000098436:c.T962C:p.V321A 7qB4 NA NA chr7 54490320 TCCxCCA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 246 1 2 12.592935 0.094595 0.02 0.887092 67 7 1855 193 60 29 0 0 AA 39.683969 132 0 3533 0 KEEP - Mrgpra9 NO B[a]P_1 chr7 54490333 54490333 C G exonic Mrgpra9 nonsynonymous SNV NM_001177566:c.G952C:p.A318P exonic Mrgpra9 nonsynonymous SNV uc012fla.1:c.G952C:p.A318P exonic ENSMUSG00000074111 nonsynonymous SNV ENSMUST00000098436:c.G949C:p.A317P 7qB4 NA NA chr7 54490333 CAGxTGT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 245 1 2 12.467245 0.090909 0.02 0.958625 70 7 1961 193 60 29 0 0 CC 40.275512 134 0 3744 0 KEEP - Mrgpra9 NO B[a]P_1 chr7 54681932 54681932 T A exonic Mrgpra2a nonsynonymous SNV NM_001172588:c.A947T:p.E316V exonic Mrgpra2a nonsynonymous SNV uc009hag.2:c.A947T:p.E316V exonic ENSMUSG00000039854 nonsynonymous SNV ENSMUST00000060569:c.A869T:p.E290V 7qB4 "Score=0.992523;Name=No.101347,chr7:54709200" NA chr7 54681932 GTCxCAG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 271 0 30 38.936867 0.211765 0.02 0.949838 67 18 1894 494 46 46 0 0 TT 39.094587 130 0 3632 0 KEEP - Mrgpra2a NO B[a]P_1 chr7 54682050 54682050 T G exonic Mrgpra2a nonsynonymous SNV NM_001172588:c.A829C:p.T277P exonic Mrgpra2a nonsynonymous SNV uc009hag.2:c.A829C:p.T277P exonic ENSMUSG00000039854 nonsynonymous SNV ENSMUST00000060569:c.A751C:p.T251P 7qB4 "Score=0.992523;Name=No.101347,chr7:54709200" NA chr7 54682050 CAGxCAG T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 175 1 41 9.037812 0.087719 0.02 1.17923 52 5 1445 140 46 23 0 0 TT 26.740466 89 0 2410 0 KEEP - Mrgpra2a NO B[a]P_1 chr7 54845133 54845133 C A exonic Mrgpra3 synonymous SNV NM_153067:c.G414T:p.L138L exonic Mrgpra3 synonymous SNV uc009haj.2:c.G414T:p.L138L exonic ENSMUSG00000078698 synonymous SNV ENSMUST00000046797:c.G333T:p.L111L 7qB4 "Score=0.935045;Name=No.101352,chr7:54805085" NA chr7 54845133 AGAxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 137 4 3 20.338564 0.188679 0.02 0.993059 43 10 1174 267 60 37 0 0 CC 18.34806 61 0 1713 0 KEEP - Mrgpra3 YES B[a]P_1 chr7 55236571 55236571 C T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.G651A:p.M217I exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.G651A:p.M217I exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.G651A:p.M217I 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236571 CAGxATG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 197 2 1 11.459716 0.082353 0.02 2.114695 78 7 2148 186 60 60 0 0 CC 22.860117 76 0 2127 0 KEEP - Mrgpra4 NO B[a]P_1 chr7 55236580 55236580 C G exonic Mrgpra4 synonymous SNV NM_153524:c.G642C:p.V214V exonic Mrgpra4 synonymous SNV uc009hak.1:c.G642C:p.V214V exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G642C:p.V214V 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236580 GGTxACG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 208 2 3 12.418215 0.081395 0.02 2.479197 79 7 2218 196 60 60 0 0 CC 25.568402 85 0 2417 0 KEEP - Mrgpra4 NO B[a]P_1 chr7 55236601 55236601 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G621A:p.T207T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G621A:p.T207T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G621A:p.T207T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236601 TTTxGTC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 223 4 3 18.209226 0.105263 0.02 2.213228 85 10 2230 273 60 37 0 0 CC 27.652936 92 0 2412 0 KEEP - Mrgpra4 NO B[a]P_1 chr7 55236643 55236643 G A exonic Mrgpra4 synonymous SNV NM_153524:c.C579T:p.T193T exonic Mrgpra4 synonymous SNV uc009hak.1:c.C579T:p.T193T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.C579T:p.T193T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236643 CAGxGTG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 273 4 2 30.904506 0.145631 0.02 2.338294 88 15 2455 423 60 60 0 0 GG 34.279803 114 0 3142 0 KEEP - Mrgpra4 NO B[a]P_1 chr7 55236700 55236700 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G522A:p.T174T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G522A:p.T174T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G522A:p.T174T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236700 GTTxGTT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 267 0 0 62.80078 0.264151 0.02 2.20637 78 28 1969 760 60 60 0 0 CC 33.35385 111 0 2837 0 KEEP - Mrgpra4 NO B[a]P_1 chr7 55276756 55276756 A G exonic Mrgprx1 synonymous SNV NM_207540:c.T612C:p.I204I exonic Mrgprx1 synonymous SNV uc009hal.1:c.T612C:p.I204I exonic ENSMUSG00000070552 synonymous SNV ENSMUST00000094390:c.T612C:p.I204I 7qB4 NA NA chr7 55276756 GAGxATC A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.385603 0.387407 0.995343 35 0 0 30.269012 0.55 0.02 -0.175375 9 11 247 310 60 60 0 0 AA 4.195495 14 0 372 0 KEEP - Mrgprx1 NO B[a]P_1 chr7 55277022 55277022 T C exonic Mrgprx1 nonsynonymous SNV NM_207540:c.A346G:p.I116V exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.A346G:p.I116V exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.A346G:p.I116V 7qB4 NA NA chr7 55277022 GGAxGCT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954488 0.954491 0.999997 92 3 0 48.733957 0.456522 0.02 -0.429544 25 21 682 525 60 60 0 0 TT 8.025024 29 1 785 6 KEEP - Mrgprx1 NO B[a]P_1 chr7 55277271 55277271 C T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.G97A:p.V33I exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.G97A:p.V33I exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.G97A:p.V33I 7qB4 NA NA chr7 55277271 GGAxCAG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851867 0.851984 0.999863 64 0 0 34.0326 0.388889 0.02 -0.333053 22 14 590 378 60 60 0 0 CC 6.015807 20 0 559 0 KEEP - Mrgprx1 NO B[a]P_1 chr7 55277275 55277275 G T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.C93A:p.F31L exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.C93A:p.F31L exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.C93A:p.F31L 7qB4 NA NA chr7 55277275 CAGxAAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835607 0.835716 0.999869 62 0 0 33.645893 0.4 0.02 -0.324244 21 14 594 372 60 60 0 0 GG 6.316971 21 0 593 0 KEEP - Mrgprx1 YES B[a]P_1 chr7 55277282 55277282 A G exonic Mrgprx1 nonsynonymous SNV NM_207540:c.T86C:p.L29P exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.T86C:p.L29P exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.T86C:p.L29P 7qB4 NA NA chr7 55277282 GACxGGG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717222 0.717315 0.999869 57 0 0 24.05701 0.344828 0.02 -0.271787 19 10 530 274 60 60 0 0 AA 6.315881 21 0 575 0 KEEP - Mrgprx1 NO B[a]P_1 chr7 55424203 55424203 G C exonic Mrgprb5 synonymous SNV NM_207538:c.C153G:p.V51V exonic Mrgprb5 synonymous SNV uc009ham.1:c.C153G:p.V51V exonic ENSMUSG00000070551 synonymous SNV ENSMUST00000094389:c.C153G:p.V51V 7qB4 NA NA chr7 55424203 TAGxACT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.714798 0.717315 0.99649 51 3 0 14.155412 0.225806 0.02 -0.271602 24 7 678 180 60 60 0 0 GG 4.512228 15 0 425 0 KEEP - Mrgprb5 NO B[a]P_1 chr7 55454089 55454089 A G exonic Mrgprb4 synonymous SNV NM_205795:c.T460C:p.L154L exonic Mrgprb4 synonymous SNV uc009han.1:c.T460C:p.L154L exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.T460C:p.L154L 7qB4 NA NA chr7 55454089 ACAxTAG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353901 0.353947 0.999869 45 0 0 14.769181 0.352941 0.02 -0.166599 11 6 301 167 60 60 0 0 AA 6.31582 21 0 574 0 KEEP - Mrgprb4 NO B[a]P_1 chr7 55454369 55454369 C T exonic Mrgprb4 synonymous SNV NM_205795:c.G180A:p.R60R exonic Mrgprb4 synonymous SNV uc009han.1:c.G180A:p.R60R exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.G180A:p.R60R 7qB4 NA NA chr7 55454369 ATTxCTA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973898 0.973965 0.999931 86 3 0 18.062885 0.235294 0.02 1.22168 26 8 740 223 60 60 0 0 CC 7.512868 25 0 693 0 KEEP - Mrgprb4 NO B[a]P_1 chr7 55644240 55644240 C T exonic Mrgprb8 synonymous SNV NM_207539:c.C288T:p.I96I exonic Mrgprb8 synonymous SNV uc009hao.2:c.C288T:p.I96I exonic ENSMUSG00000050870 synonymous SNV ENSMUST00000056676:c.C288T:p.I96I 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644240 CATxGAC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 207 1 0 99.79656 0.380952 0.02 2.470331 65 40 1589 1110 60 60 0 0 CC 19.462916 74 1 1902 26 KEEP + Mrgprb8 NO B[a]P_1 chr7 55644712 55644712 C T exonic Mrgprb8 nonsynonymous SNV NM_207539:c.C760T:p.P254S exonic Mrgprb8 nonsynonymous SNV uc009hao.2:c.C760T:p.P254S exonic ENSMUSG00000050870 nonsynonymous SNV ENSMUST00000056676:c.C760T:p.P254S 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644712 ATGxCTT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.80019 0.800245 0.999931 73 0 0 37.371201 0.428571 0.02 -0.30689 20 15 564 406 60 60 0 0 CC 7.519446 25 0 691 0 KEEP + Mrgprb8 NO B[a]P_1 chr7 55702613 55702613 T C exonic Mrgprb1 nonsynonymous SNV NM_205810:c.A920G:p.K307R exonic Mrgprb1 nonsynonymous SNV uc009hap.1:c.A920G:p.K307R exonic ENSMUSG00000070547 nonsynonymous SNV ENSMUST00000094384:c.A920G:p.K307R 7qB4 NA NA chr7 55702613 AGCxTGA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 131 0 0 56.700316 0.392857 0.02 1.302461 34 22 944 625 60 60 0 0 TT 19.550963 65 0 1806 0 KEEP - Mrgprb1 NO B[a]P_1 chr7 56133457 56133457 T A exonic E2f8 synonymous SNV NM_001013368:c.A306T:p.S102S exonic E2f8 synonymous SNV uc009haz.2:c.A306T:p.S102S exonic ENSMUSG00000046179 synonymous SNV ENSMUST00000058745:c.A306T:p.S102S 7qB4 NA NA chr7 56133457 TCCxGAT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 169 1 0 68.696061 0.375 0.02 1.063897 45 27 1245 765 60 60 0 0 TT 23.149536 77 0 2102 0 KEEP - E2f8 NO B[a]P_1 chr7 56803423 56803423 T C exonic Nav2 synonymous SNV NM_175272:c.T3429C:p.S1143S exonic Nav2 synonymous SNV uc009hbm.2:c.T3429C:p.S1143S exonic ENSMUSG00000052512 synonymous SNV ENSMUST00000064395:c.T3429C:p.S1143S 7qB4 NA NA chr7 56803423 CAGxGGG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.999859 56 0 0 17.128699 0.3 0.02 -0.262668 21 9 567 208 60 60 0 0 TT 5.405568 18 0 465 0 KEEP + Nav2 NO B[a]P_1 chr7 57484324 57484324 T G intronic Nell1 NA NA intronic Nell1 NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57484324 GTCxGCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668463 0.668523 0.999909 59 1 0 39.828864 0.517241 0.02 -0.254287 14 15 392 414 60 60 0 0 TT 7.217961 24 0 656 0 KEEP + Nell1 NO B[a]P_1 chr7 59116908 59116908 G A exonic Fancf synonymous SNV NM_001115087:c.C717T:p.A239A exonic Fancf synonymous SNV uc012flg.1:c.C717T:p.A239A exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.C717T:p.A239A 7qB5 NA NA chr7 59116908 CTTxGCT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 160 5 0 92.401472 0.397849 0.02 0.871082 56 37 1546 1019 60 60 0 0 GG 13.52681 45 0 1245 0 KEEP - Fancf NO B[a]P_1 chr7 59117508 59117508 A G exonic Fancf synonymous SNV NM_001115087:c.T117C:p.R39R exonic Fancf synonymous SNV uc012flg.1:c.T117C:p.R39R exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.T117C:p.R39R 7qB5 NA NA chr7 59117508 ATAxCGC A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 90 0 0 26.744601 0.342857 0.02 -0.306693 23 12 627 308 60 60 0 0 AA 11.67874 43 1 1166 11 KEEP - Fancf NO B[a]P_1 chr7 59117648 59117648 C T upstream Fancf NA NA UTR5 Gas2 NA NA UTR5 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59117648 CATxCCG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 77 1 0 20.297772 0.272727 0.02 -0.315658 24 9 670 244 60 60 0 0 CC 11.067771 37 0 1022 0 KEEP + Fancf NO B[a]P_1 chr7 63027927 63027927 C G exonic Siglech nonsynonymous SNV NM_178706:c.C913G:p.H305D exonic Siglech nonsynonymous SNV uc009hdb.2:c.C865G:p.H289D exonic ENSMUSG00000051504 nonsynonymous SNV ENSMUST00000094360:c.C865G:p.H289D 7qB5 NA NA chr7 63027927 GCAxACG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139815 0.139832 0.999879 40 0 0 13.093417 0.454545 0.02 -0.105223 6 5 162 140 60 60 0 0 CC 6.617305 22 0 614 0 KEEP + Siglech NO B[a]P_1 chr7 63068956 63068956 A T intronic Tubgcp5 NA NA intronic Tubgcp5 NA NA intronic ENSMUSG00000033790 NA NA 7qB5 NA NA chr7 63068956 TGCxGGC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 116 2 0 39.325706 0.347826 0.02 -0.403394 30 16 854 446 60 60 0 0 AA 14.738777 49 0 1371 0 KEEP + Tubgcp5 NO B[a]P_1 chr7 63147515 63147515 G C intronic Cyfip1 NA NA exonic Cyfip1 nonsynonymous SNV uc009hdj.1:c.G1267C:p.G423R exonic ENSMUSG00000030447 nonsynonymous SNV ENSMUST00000168271:c.G1267C:p.G423R 7qB5 NA NA chr7 63147515 ATCxGAG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 85 3 0 21.510761 0.322581 0.02 -0.297702 21 10 526 252 60 60 0 0 GG 10.824513 36 0 965 0 KEEP + Cyfip1 NO B[a]P_1 chr7 63148642 63148642 C T intronic Cyfip1 NA NA intronic Cyfip1 NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63148642 CTCxCTG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.663536 0.668523 0.99254 44 0 0 46.660854 0.586207 0.02 -0.254291 12 17 345 471 60 60 0 0 CC 2.70719 9 0 252 0 KEEP + Cyfip1 NO B[a]P_1 chr7 63327733 63327733 A G exonic Herc2 synonymous SNV NM_010418:c.A258G:p.E86E exonic "Herc2,rjs" synonymous SNV uc009hdw.1:c.A258G:p.E86E exonic ENSMUSG00000030451 synonymous SNV ENSMUST00000041015:c.A144G:p.E48E 7qB5 NA NA chr7 63327733 AGAxGAG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 79 0 0 44.291691 0.472222 0.02 -0.315661 19 17 535 470 60 60 0 0 AA 8.121873 27 0 763 0 KEEP + Herc2 NO B[a]P_1 chr7 63440089 63440089 T C intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440089 TGGxTGT T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780958 0.78106 0.999869 60 0 0 27.554836 0.323529 0.02 -0.298112 23 11 615 316 60 60 0 0 TT 6.315743 21 0 572 0 KEEP + Herc2 NO B[a]P_1 chr7 63440091 63440091 G A intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440091 GTTxTGA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760782 0.760887 0.999863 59 0 0 22.6806 0.30303 0.02 -0.289344 23 10 628 267 60 60 0 0 GG 6.015478 20 0 556 0 KEEP + Herc2 NO B[a]P_1 chr7 63612621 63612621 C T intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63612621 TTAxTCG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818408 0.818465 0.999931 73 2 0 37.535974 0.416667 0.02 -0.315648 21 15 585 410 60 60 0 0 CC 7.520355 25 0 710 0 KEEP + Oca2 NO B[a]P_1 chr7 6377499 6377499 C G exonic Gm16532 nonsynonymous SNV NM_001134752:c.C72G:p.C24W exonic Gm16532 nonsynonymous SNV uc009fbk.1:c.C72G:p.C24W exonic ENSMUSG00000045929 nonsynonymous SNV ENSMUST00000054781:c.C72G:p.C24W 7qA1 NA NA chr7 6377499 ATGxCAC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 162 0 0 47.616402 0.25 0.02 0.95902 63 21 1727 581 60 60 0 0 CC 16.542489 55 0 1524 0 KEEP + Gm16532 NO B[a]P_1 chr7 6433493 6433493 C A exonic Olfr5 nonsynonymous SNV NM_146914:c.G373T:p.D125Y exonic Olfr5 nonsynonymous SNV uc009fbo.1:c.G373T:p.D125Y exonic ENSMUSG00000066844 nonsynonymous SNV ENSMUST00000086319:c.G391T:p.D131Y 7qA1 NA NA chr7 6433493 GATxATA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 133 0 0 12.955881 0.102564 0.02 0.913613 70 8 1954 203 60 60 0 0 CC 14.131134 47 0 1326 0 KEEP - Olfr5 YES B[a]P_1 chr7 64677117 64677117 G A exonic Gabra5 synonymous SNV NM_176942:c.C720T:p.S240S exonic Gabra5 synonymous SNV uc009heb.1:c.C720T:p.S240S exonic ENSMUSG00000055078 synonymous SNV ENSMUST00000068456:c.C720T:p.S240S 7qC NA NA chr7 64677117 TGTxCTG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98185 0.981955 0.999892 95 0 0 84.736082 0.578947 0.02 1.097982 24 33 679 859 60 60 0 0 GG 6.919216 23 0 662 0 KEEP - Gabra5 NO B[a]P_1 chr7 64708281 64708281 C T intronic Gabra5 NA NA intronic Gabra5 NA NA intronic ENSMUSG00000055078 NA NA 7qC NA NA chr7 64708281 ACAxGCC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760795 0.760887 0.999879 60 4 0 32.292752 0.433333 0.02 -0.289133 17 13 414 350 60 60 0 0 CC 6.614702 22 0 581 0 KEEP - Gabra5 NO B[a]P_1 chr7 69564357 69564357 C A exonic Mkrn3 stopgain SNV NM_011746:c.G571T:p.E191X exonic Mkrn3 stopgain SNV uc009hfi.1:c.G571T:p.E191X exonic ENSMUSG00000070527 stopgain SNV ENSMUST00000094340:c.G571T:p.E191X 7qC NA NA chr7 69564357 TTTxAGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999998 94 1 0 8.778088 0.106383 0.02 -0.412155 42 5 1192 133 60 60 0 0 CC 10.228064 34 0 972 0 KEEP - Mkrn3 YES B[a]P_1 chr7 79404202 79404202 G T exonic Mctp2 nonsynonymous SNV NM_001024703:c.C248A:p.S83Y exonic Mctp2 nonsynonymous SNV uc009hnp.1:c.C248A:p.S83Y exonic ENSMUSG00000032776 nonsynonymous SNV ENSMUST00000079323:c.C248A:p.S83Y 7qD1 NA NA chr7 79404202 GTGxACA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 160 1 0 56.707739 0.288889 0.02 0.808276 64 26 1800 678 60 60 0 0 GG 15.334256 51 0 1433 0 KEEP - Mctp2 YES B[a]P_1 chr7 87235254 87235254 C T exonic Zfp710 nonsynonymous SNV NM_001145999:c.C1865T:p.S622F exonic Zfp710 nonsynonymous SNV uc009hzj.2:c.C1865T:p.S622F exonic ENSMUSG00000048897 nonsynonymous SNV ENSMUST00000049680:c.C1865T:p.S622F 7qD3 NA NA chr7 87235254 CCTxTGA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 183 4 0 46.152505 0.225806 0.02 0.773064 72 21 2050 577 60 60 0 0 CC 19.85332 66 0 1882 0 KEEP + Zfp710 NO B[a]P_1 chr7 88465603 88465603 C G exonic Pde8a nonsynonymous SNV NM_008803:c.C1586G:p.S529C exonic Pde8a nonsynonymous SNV uc009ibt.1:c.C1586G:p.S529C exonic ENSMUSG00000025584 nonsynonymous SNV ENSMUST00000026672:c.C1586G:p.S529C 7qD3 NA NA chr7 88465603 GCTxTGA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 205 0 0 29.803565 0.141509 0.02 2.460875 91 15 2599 414 60 60 0 0 CC 22.261051 74 0 2116 0 KEEP + Pde8a NO B[a]P_1 chr7 88622822 88622822 G C exonic Ap3b2 nonsynonymous SNV NM_021492:c.C491G:p.T164R exonic Ap3b2 nonsynonymous SNV uc009iby.1:c.C491G:p.T164R exonic ENSMUSG00000062444 nonsynonymous SNV ENSMUST00000082090:c.C491G:p.T164R 7qD3 NA NA chr7 88622822 GCTxTTT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835599 0.835716 0.99986 68 0 0 18.53084 0.216216 0.02 -0.324447 29 8 798 231 60 60 0 0 GG 5.706564 19 0 534 0 KEEP - Ap3b2 NO B[a]P_1 chr7 90744577 90744577 C A exonic Tmc3 synonymous SNV NM_177695:c.C319A:p.R107R exonic Tmc3 synonymous SNV uc009idn.1:c.C319A:p.R107R exonic ENSMUSG00000038540 synonymous SNV ENSMUST00000039317:c.C319A:p.R107R 7qD3 NA NA chr7 90744577 TGGxGGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 114 1 0 16.254294 0.142857 0.02 1.204656 48 8 1209 224 60 60 0 0 CC 12.025764 40 0 1051 0 KEEP + Tmc3 YES B[a]P_1 chr7 90751832 90751832 C A intronic Tmc3 NA NA ncRNA_intronic AK042300 NA NA ncRNA_intronic ENSMUSG00000087088 NA NA 7qD3 NA NA chr7 90751832 TCTxTGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 155 0 0 25.472821 0.164557 0.02 0.904602 66 13 1867 346 60 60 0 0 CC 17.146508 57 0 1635 0 KEEP + Tmc3 YES B[a]P_1 chr7 90761025 90761025 G T exonic Tmc3 synonymous SNV NM_177695:c.G1800T:p.A600A exonic Tmc3 synonymous SNV uc009idn.1:c.G1800T:p.A600A exonic ENSMUSG00000038540 synonymous SNV ENSMUST00000039317:c.G1800T:p.A600A 7qD3 NA NA chr7 90761025 GGCxGTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 181 1 0 62.041058 0.288889 0.02 0.907527 64 26 1551 731 60 60 0 0 GG 19.825533 66 0 1642 0 KEEP + Tmc3 YES B[a]P_1 chr7 90768617 90768617 T A exonic Tmc3 synonymous SNV NM_177695:c.T2502A:p.S834S exonic Tmc3 synonymous SNV uc009ido.1:c.T2502A:p.S834S exonic ENSMUSG00000038540 synonymous SNV ENSMUST00000164944:c.T2415A:p.S805S 7qD3 NA NA chr7 90768617 CTCxCCT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934481 0.934492 0.999988 84 1 0 26.960878 0.26087 0.02 -0.403362 34 12 965 327 60 60 0 0 TT 8.120849 27 0 749 0 KEEP + Tmc3 NO B[a]P_1 chr7 92707810 92707810 G T exonic Vmn2r70 synonymous SNV NM_001105183:c.C1968A:p.A656A exonic Vmn2r70 synonymous SNV uc012fok.1:c.C1968A:p.A656A exonic ENSMUSG00000090806 synonymous SNV ENSMUST00000168230:c.C1968A:p.A656A 7qD3 NA NA chr7 92707810 AATxGCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 226 1 0 51.892344 0.258427 0.02 0.906018 66 23 1845 630 60 60 0 0 GG 33.090159 110 0 3131 0 KEEP - Vmn2r70 YES B[a]P_1 chr7 93614030 93614030 C G exonic Olfr299 nonsynonymous SNV NM_001011767:c.C108G:p.S36R exonic Olfr299 nonsynonymous SNV uc009ifa.1:c.C108G:p.S36R exonic ENSMUSG00000020168 nonsynonymous SNV ENSMUST00000057734:c.C108G:p.S36R 7qD3 NA NA chr7 93614030 CAGxCTG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 238 3 0 54.300957 0.235849 0.02 2.462384 81 25 2211 675 60 60 0 0 CC 30.362689 101 0 2774 0 KEEP + Olfr299 NO B[a]P_1 chr8 107799551 107799551 C G exonic Hsf4 nonsynonymous SNV NM_001256044:c.C1292G:p.S431C exonic Hsf4 nonsynonymous SNV uc009ncc.1:c.C1292G:p.S431C exonic ENSMUSG00000033249 nonsynonymous SNV ENSMUST00000163734:c.C1292G:p.S431C 8qD3 NA NA chr8 107799551 CCTxTCC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 152 1 0 24.706967 0.171429 0.02 1.179752 58 12 1638 329 60 60 0 0 CC 15.040449 50 0 1430 0 KEEP + Hsf4 NO B[a]P_1 chr8 107900394 107900394 G T exonic Plekhg4 nonsynonymous SNV NM_001081333:c.G770T:p.W257L exonic Plekhg4 nonsynonymous SNV uc009ncw.1:c.G770T:p.W257L exonic ENSMUSG00000014782 nonsynonymous SNV ENSMUST00000160191:c.G563T:p.W188L 8qD3 NA NA chr8 107900394 CCTxGGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 294 1 0 52.348241 0.142077 0.02 3.481055 157 26 4413 724 60 60 0 0 GG 25.568173 85 0 2397 0 KEEP + Plekhg4 YES B[a]P_1 chr8 107911191 107911191 G C exonic Kctd19 nonsynonymous SNV NM_177791:c.C1749G:p.S583R exonic Kctd19 nonsynonymous SNV uc009ncz.1:c.C1680G:p.S560R exonic ENSMUSG00000051648 nonsynonymous SNV ENSMUST00000167294:c.C1680G:p.S560R 8qD3 NA NA chr8 107911191 CTGxCTG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 259 0 0 71.280219 0.1875 0.02 3.53384 143 33 3987 924 60 60 1 0 GG 18.347524 61 0 1693 0 KEEP - Kctd19 NO B[a]P_1 chr8 108226189 108226189 G C exonic Pard6a nonsynonymous SNV NM_001047435:c.G179C:p.G60A exonic Pard6a nonsynonymous SNV uc009ndu.1:c.G131C:p.G44A exonic ENSMUSG00000005699 nonsynonymous SNV ENSMUST00000093195:c.G179C:p.G60A 8qD3 NA NA chr8 108226189 TTGxCTA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 748 2 0 100.567864 0.133333 0.02 8.856738 325 50 8986 1406 60 60 0 0 GG 78.489841 261 0 7167 0 KEEP + Pard6a NO B[a]P_1 chr8 108233484 108233484 C A exonic 4933405L10Rik nonsynonymous SNV NM_027655:c.C487A:p.P163T exonic 4933405L10Rik nonsynonymous SNV uc009nea.2:c.C487A:p.P163T exonic ENSMUSG00000013158 nonsynonymous SNV ENSMUST00000013302:c.C487A:p.P163T 8qD3 NA NA chr8 108233484 GAGxGTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990961 0.990964 0.999997 93 1 0 18.791841 0.15 0.02 1.250422 51 9 1204 255 60 60 1 0 CC 9.26242 31 0 701 0 KEEP + 4933405L10Rik YES B[a]P_1 chr8 108479642 108479642 G C intronic Slc12a4 NA NA ncRNA_intronic Kcc1 NA NA intronic ENSMUSG00000017765 NA NA 8qD3 NA NA chr8 108479642 GGGxCGA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 165 2 0 30.513257 0.145631 0.02 2.488289 88 15 2408 419 60 60 0 0 GG 13.53083 45 0 1208 0 KEEP - Slc12a4 NO B[a]P_1 chr8 108499052 108499052 C A intronic Dpep3 NA NA ncRNA_intronic AK139607 NA NA intronic ENSMUSG00000031898 NA NA 8qD3 NA NA chr8 108499052 GCCxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 0.999999 84 0 0 23.031897 0.25641 0.02 -0.341963 29 10 802 279 60 60 0 0 CC 10.828249 36 0 1001 0 KEEP - Dpep3 YES B[a]P_1 chr8 109563013 109563013 A T exonic Vps4a nonsynonymous SNV NM_126165:c.A367T:p.N123Y exonic Vps4a nonsynonymous SNV uc009ngv.1:c.A367T:p.N123Y exonic ENSMUSG00000031913 nonsynonymous SNV ENSMUST00000034388:c.A367T:p.N123Y 8qD3 NA NA chr8 109563013 CCGxACA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 253 2 0 46.509508 0.194915 0.02 2.160007 95 23 2640 608 60 60 0 0 AA 31.833451 106 0 2884 0 KEEP + Vps4a NO B[a]P_1 chr8 109620036 109620036 C A exonic Terf2 nonsynonymous SNV NM_001083118:c.G374T:p.R125L exonic Terf2 nonsynonymous SNV uc009nhb.1:c.G374T:p.R125L exonic ENSMUSG00000031921 nonsynonymous SNV ENSMUST00000068388:c.G374T:p.R125L 8qD3 NA NA chr8 109620036 TCCxGGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 130 0 0 31.184883 0.197183 0.02 1.171531 57 14 1360 398 60 60 0 0 CC 13.825095 46 0 1184 0 KEEP - Terf2 YES B[a]P_1 chr8 111773091 111773091 G T intergenic "Zfhx3(dist=287555),Gm1943(dist=90609)" NA NA ncRNA_intronic AK083706 NA NA exonic ENSMUSG00000054165 synonymous SNV ENSMUST00000067018:c.C303A:p.P101P 8qD3 NA NA chr8 111773091 TCTxGGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 154 0 0 18.049102 0.145161 0.02 1.053653 53 9 1493 249 60 60 0 0 GG 21.958942 73 0 2062 0 KEEP + Zfhx3 YES B[a]P_1 chr8 112076289 112076289 C A exonic Dhx38 nonsynonymous SNV NM_178380:c.G3226T:p.A1076S exonic Dhx38 nonsynonymous SNV uc009nij.1:c.G3226T:p.A1076S exonic ENSMUSG00000037993 nonsynonymous SNV ENSMUST00000042601:c.G3226T:p.A1076S 8qD3 NA NA chr8 112076289 CAGxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835598 0.835716 0.999859 63 0 0 20.981788 0.243243 0.02 -0.324448 28 9 775 256 60 60 0 0 CC 5.414038 18 0 501 0 KEEP - Dhx38 YES B[a]P_1 chr8 112076291 112076291 C T exonic Dhx38 nonsynonymous SNV NM_178380:c.G3224A:p.C1075Y exonic Dhx38 nonsynonymous SNV uc009nij.1:c.G3224A:p.C1075Y exonic ENSMUSG00000037993 nonsynonymous SNV ENSMUST00000042601:c.G3224A:p.C1075Y 8qD3 NA NA chr8 112076291 GCAxAGA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835598 0.835716 0.999859 62 0 0 19.282268 0.243243 0.02 -0.324403 28 9 757 239 60 60 0 0 CC 5.413851 18 0 496 0 KEEP - Dhx38 NO B[a]P_1 chr8 112077150 112077150 A G intronic Dhx38 NA NA intronic Dhx38 NA NA intronic ENSMUSG00000037993 NA NA 8qD3 NA NA chr8 112077150 GGGxGGG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 187 1 0 15.423459 0.074627 0.02 2.20723 124 10 3471 259 60 60 0 0 AA 14.1344 47 0 1283 0 KEEP - Dhx38 NO B[a]P_1 chr8 11242140 11242140 C A intronic Col4a1 NA NA intronic Col4a1 NA NA intronic ENSMUSG00000031502 NA NA 8qA1.1 NA NA chr8 11242140 CTGxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 494 6 0 130.208543 0.238494 0.02 4.775665 182 57 5060 1600 60 60 0 0 CC 58.028334 193 0 5345 0 KEEP - Col4a1 YES B[a]P_1 chr8 113272154 113272154 G T exonic Il34 synonymous SNV NM_001135100:c.C391A:p.R131R exonic Il34 synonymous SNV uc012gko.1:c.C388A:p.R130R exonic ENSMUSG00000031750 synonymous SNV ENSMUST00000076846:c.C391A:p.R131R 8qE1 NA NA chr8 113272154 TCCxCTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970753 0.97082 0.999931 81 2 0 22.241951 0.188679 0.02 1.231619 43 10 933 286 60 60 0 0 GG 7.506228 25 0 577 0 KEEP - Il34 YES B[a]P_1 chr8 113636626 113636626 A C exonic Pdpr nonsynonymous SNV NM_198308:c.A480C:p.K160N exonic Pdpr nonsynonymous SNV uc009nlw.1:c.A480C:p.K160N exonic ENSMUSG00000033624 nonsynonymous SNV ENSMUST00000039333:c.A480C:p.K160N 8qE1 NA NA chr8 113636626 GAAxGTG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 138 0 0 12.36841 0.125 0.02 0.842202 56 8 1577 190 60 60 0 0 AA 15.038428 50 0 1386 0 KEEP + Pdpr NO B[a]P_1 chr8 113645165 113645165 A C exonic Pdpr nonsynonymous SNV NM_198308:c.A1305C:p.E435D exonic Pdpr nonsynonymous SNV uc009nlw.1:c.A1305C:p.E435D exonic ENSMUSG00000033624 nonsynonymous SNV ENSMUST00000039333:c.A1305C:p.E435D 8qE1 NA NA chr8 113645165 GGAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 187 0 0 10.788531 0.07619 0.02 2.274526 97 8 2692 192 60 60 0 0 AA 17.409263 58 0 1589 0 KEEP + Pdpr NO B[a]P_1 chr8 114235337 114235337 C G intronic Bcar1 NA NA intronic Bcar1 NA NA intronic ENSMUSG00000031955 NA NA 8qE1 NA NA chr8 114235337 ACAxGTG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351693 0.353947 0.993634 36 0 0 20.648572 0.444444 0.02 -0.166523 10 8 239 222 60 60 0 0 CC 3.604181 12 0 284 0 KEEP - Bcar1 NO B[a]P_1 chr8 114532196 114532196 C A exonic Kars nonsynonymous SNV NM_001130868:c.G57T:p.W19C exonic Kars nonsynonymous SNV uc009nng.2:c.G57T:p.W19C exonic ENSMUSG00000031948 nonsynonymous SNV ENSMUST00000093120:c.G57T:p.W19C 8qE1 NA NA chr8 114532196 TGCxCAT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 133 0 0 35.297955 0.228571 0.02 1.081419 54 16 1507 440 60 60 0 0 CC 15.039385 50 0 1394 0 KEEP - Kars YES B[a]P_1 chr8 114535788 114535788 C T exonic Terf2ip nonsynonymous SNV NM_020584:c.C407T:p.A136V exonic Terf2ip nonsynonymous SNV uc009nnh.1:c.C407T:p.A136V exonic ENSMUSG00000033430 nonsynonymous SNV ENSMUST00000052138:c.C407T:p.A136V 8qE1 NA NA chr8 114535788 ACGxGGA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.712749 0.717315 0.993634 45 0 0 12.752601 0.193548 0.02 -0.271717 25 6 645 165 60 60 0 0 CC 3.55959 12 0 283 0 KEEP + Terf2ip NO B[a]P_1 chr8 114536039 114536039 G T exonic Terf2ip stopgain SNV NM_020584:c.G658T:p.G220X exonic Terf2ip stopgain SNV uc009nnh.1:c.G658T:p.G220X exonic ENSMUSG00000033430 stopgain SNV ENSMUST00000052138:c.G658T:p.G220X 8qE1 NA NA chr8 114536039 AGCxGAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918051 0.918171 0.999869 73 0 0 30.708667 0.295455 0.02 -0.385666 31 13 817 361 60 60 0 0 GG 6.313769 21 0 560 0 KEEP + Terf2ip YES B[a]P_1 chr8 119544966 119544966 A T exonic Pkd1l2 stopgain SNV NM_029686:c.T5678A:p.L1893X exonic Pkd1l2 stopgain SNV uc012glj.1:c.T170A:p.L57X exonic ENSMUSG00000034416 stopgain SNV ENSMUST00000098375:c.T611A:p.L204X 8qE1 NA NA chr8 119544966 AATxAGG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 126 0 0 15.588014 0.148148 0.02 1.123874 46 8 1250 216 60 60 0 0 AA 14.735834 49 0 1333 0 KEEP - Pkd1l2 NO B[a]P_1 chr8 119606285 119606285 C A exonic Pkd1l2 nonsynonymous SNV NM_029686:c.G65T:p.G22V exonic Pkd1l2 nonsynonymous SNV uc012gli.1:c.G65T:p.G22V exonic ENSMUSG00000034416 nonsynonymous SNV ENSMUST00000109093:c.G65T:p.G22V 8qE1 NA NA chr8 119606285 CCCxCTT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990962 0.990964 0.999998 107 0 0 44.237467 0.311475 0.02 1.053881 42 19 1160 516 60 60 0 0 CC 10.219357 34 0 932 0 KEEP - Pkd1l2 YES B[a]P_1 chr8 122205037 122205037 A C exonic Wfdc1 nonsynonymous SNV NM_023395:c.A500C:p.N167T exonic Wfdc1 nonsynonymous SNV uc009nqd.1:c.A500C:p.N167T exonic ENSMUSG00000023336 nonsynonymous SNV ENSMUST00000024107:c.A500C:p.N167T 8qE1 NA NA chr8 122205037 CCAxCCA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 207 0 0 31.16984 0.125984 0.02 2.375423 111 16 2991 444 60 60 0 0 AA 18.336545 61 0 1643 0 KEEP + Wfdc1 NO B[a]P_1 chr8 122272024 122272024 T C intronic Atp2c2 NA NA intronic Atp2c2 NA NA intronic ENSMUSG00000034112 NA NA 8qE1 NA NA chr8 122272024 CAGxGGG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.759237 0.760887 0.997832 55 0 0 12.571549 0.181818 0.02 -0.289353 27 6 736 165 60 60 0 0 TT 4.809947 16 0 421 0 KEEP + Atp2c2 NO B[a]P_1 chr8 122539259 122539259 C T exonic Crispld2 nonsynonymous SNV NM_030209:c.C445T:p.R149W exonic Crispld2 nonsynonymous SNV uc009nqq.2:c.C445T:p.R149W exonic ENSMUSG00000031825 nonsynonymous SNV ENSMUST00000034282:c.C445T:p.R149W 8qE1 NA NA chr8 122539259 CCAxGGT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 224 4 0 54.976931 0.2 0.02 2.15345 104 26 2591 708 60 60 0 0 CC 15.63071 52 0 1344 0 KEEP + Crispld2 NO B[a]P_1 chr8 123630762 123630762 T G intronic Mthfsd NA NA intronic Mthfsd NA NA intronic "ENSMUSG00000031816,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 123630762 CACxTCT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 165 0 0 35.339595 0.206186 0.02 0.747433 77 20 2167 472 60 60 0 1 TT 12.633476 42 0 1177 0 KEEP - Mthfsd NO B[a]P_1 chr8 124948885 124948885 G A exonic Cyba nonsynonymous SNV NM_007806:c.C472T:p.R158W exonic Cyba nonsynonymous SNV uc009nsq.2:c.C388T:p.R130W exonic ENSMUSG00000006519 nonsynonymous SNV ENSMUST00000108893:c.C388T:p.R130W 8qE1 NA NA chr8 124948885 GCCxGGG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 278 0 0 21.482062 0.076923 0.02 3.718698 144 12 3673 341 60 60 0 0 GG 27.651484 92 0 2372 0 KEEP - Cyba NO B[a]P_1 chr8 125006752 125006752 C G UTR3 Ctu2 NA NA ncRNA_exonic 2310061F22Rik NA NA UTR3 ENSMUSG00000049482 NA NA 8qE1 NA NA chr8 125006752 CCAxAGT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998865 0.998867 0.999997 128 0 0 34.854473 0.207792 0.02 1.118406 61 16 1683 443 60 60 0 0 CC 9.625472 32 0 901 0 KEEP + Ctu2 NO B[a]P_1 chr8 125162942 125162942 C G intronic Cbfa2t3 NA NA intronic Cbfa2t3 NA NA intronic "ENSMUSG00000006362,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 125162942 CTGxGGG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 1 1 203 0 0 66.946687 0.230159 0.02 2.483611 97 29 2309 826 60 60 0 0 CC 12.91768 43 0 1062 0 KEEP - Cbfa2t3 NO B[a]P_1 chr8 125167182 125167182 A G intronic Cbfa2t3 NA NA intronic Cbfa2t3 NA NA intronic "ENSMUSG00000006362,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 125167182 CCCxTAG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 136 0 0 16.530452 0.136986 0.02 1.055237 63 10 1726 244 60 60 0 0 AA 12.330588 41 0 1112 0 KEEP - Cbfa2t3 NO B[a]P_1 chr8 125389264 125389264 G C exonic Cdh15 nonsynonymous SNV NM_007662:c.G1889C:p.R630P exonic Cdh15 nonsynonymous SNV uc009ntv.1:c.G1889C:p.R630P exonic ENSMUSG00000031962 nonsynonymous SNV ENSMUST00000034443:c.G1889C:p.R630P 8qE1 NA NA chr8 125389264 TCCxGGG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 484 3 0 56.371035 0.132812 0.02 6.037659 222 34 5802 836 60 60 0 0 GG 48.065185 160 0 4155 0 KEEP + Cdh15 NO B[a]P_1 chr8 125830961 125830961 C A intronic Fanca NA NA intronic Fanca NA NA intronic "ENSMUSG00000032815,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 125830961 ACAxGAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976853 0.976865 0.999988 90 0 0 28.991752 0.292683 0.02 1.312751 29 12 724 340 60 60 0 0 CC 8.054382 27 0 678 0 KEEP - Fanca YES B[a]P_1 chr8 125922506 125922506 G T exonic Tcf25 synonymous SNV NM_001037877:c.G1719T:p.S573S exonic "Tcf25,mKIAA1049" synonymous SNV uc009nvr.1:c.G174T:p.S58S exonic ENSMUSG00000001472 synonymous SNV ENSMUST00000108839:c.G1644T:p.S548S 8qE1 NA NA chr8 125922506 CTCxGTA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 156 0 0 15.308768 0.1125 0.02 0.994568 71 9 1928 231 60 60 0 0 GG 16.537744 55 0 1478 0 KEEP + Tcf25 YES B[a]P_1 chr8 125979342 125979342 C G exonic Def8 nonsynonymous SNV NM_001281803:c.C534G:p.C178W exonic Def8 nonsynonymous SNV uc009nvx.1:c.C534G:p.C178W exonic ENSMUSG00000001482 nonsynonymous SNV ENSMUST00000065534:c.C534G:p.C178W 8qE1 NA NA chr8 125979342 GTGxCTG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 148 1 0 15.153853 0.103448 0.02 0.932897 78 9 2153 233 60 60 0 0 CC 12.905279 43 0 1163 0 KEEP + Def8 NO B[a]P_1 chr8 126442892 126442892 C T exonic Nup133 nonsynonymous SNV NM_172288:c.G1853A:p.G618D exonic Nup133 nonsynonymous SNV uc009nws.2:c.G1853A:p.G618D exonic ENSMUSG00000039509 nonsynonymous SNV ENSMUST00000044795:c.G1853A:p.G618D 8qE2 NA NA chr8 126442892 AAGxCGA C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.908987 0.909069 0.999909 73 0 0 7.379655 0.095238 0.02 -0.376914 38 4 1048 112 60 60 0 0 CC 7.203462 24 0 654 0 KEEP - Nup133 NO B[a]P_1 chr8 128468570 128468570 C A exonic BC021891 nonsynonymous SNV NM_145608:c.C2696A:p.A899D exonic BC021891 nonsynonymous SNV uc009nyq.1:c.C2696A:p.A899D exonic ENSMUSG00000031853 nonsynonymous SNV ENSMUST00000034316:c.C2696A:p.A899D 8qE2 NA NA chr8 128468570 TGGxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981866 0.981955 0.999909 90 0 0 37.442907 0.280702 0.02 1.195477 41 16 1111 445 60 60 0 0 CC 7.217762 24 0 657 0 KEEP + BC021891 YES B[a]P_1 chr8 129458860 129458860 T G UTR3 Tomm20 NA NA UTR3 Tomm20 NA NA UTR3 ENSMUSG00000058779 NA NA 8qE2 NA NA chr8 129458860 AGCxTCC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 244 0 78 13.303075 0.136364 0.02 0.63397 57 9 1619 204 36 36 0 0 TT 31.584235 105 0 2952 0 KEEP - Tomm20 NO B[a]P_1 chr8 15119209 15119209 C G intronic Myom2 NA NA intronic Myom2 NA NA intronic ENSMUSG00000031461 NA NA 8qA1.1 NA NA chr8 15119209 CTCxCTT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 224 2 0 22.223941 0.147727 0.02 0.914929 75 13 2080 320 60 60 0 0 CC 28.561733 95 0 2636 0 KEEP + Myom2 NO B[a]P_1 chr8 18948710 18948710 C A exonic Xkr5 nonsynonymous SNV NM_001113350:c.G91T:p.G31C exonic Xkr5 nonsynonymous SNV uc009kzx.2:c.G91T:p.G31C exonic ENSMUSG00000039814 nonsynonymous SNV ENSMUST00000095438:c.G91T:p.G31C 8qA1.3 NA NA chr8 18948710 GACxCGT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 79 1 0 6.796789 0.090909 0.02 -0.385825 40 4 1115 107 60 60 0 0 CC 9.625589 32 0 898 0 KEEP - Xkr5 YES B[a]P_1 chr8 23110688 23110688 C G intronic Atp7b NA NA intronic Atp7b NA NA intronic ENSMUSG00000006567 NA NA 8qA2 NA NA chr8 23110688 ACTxCCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 71 0 0 23.778595 0.285714 0.02 -0.306916 25 10 707 281 60 60 0 0 CC 8.122304 27 0 771 0 KEEP - Atp7b NO B[a]P_1 chr8 24355159 24355159 T G intronic Golga7 NA NA intronic Golga7 NA NA intronic ENSMUSG00000015341 NA NA 8qA2 NA NA chr8 24355159 AACxAAC T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 178 1 0 9.336241 0.076087 0.02 0.888559 85 7 2392 167 60 60 0 0 TT 20.75184 69 0 1895 0 KEEP - Golga7 NO B[a]P_1 chr8 3476102 3476102 A T exonic 1700019B03Rik nonsynonymous SNV NM_029598:c.A254T:p.Q85L exonic 1700019B03Rik nonsynonymous SNV uc012fyj.1:c.A254T:p.Q85L exonic ENSMUSG00000040340 nonsynonymous SNV ENSMUST00000161680:c.A254T:p.Q85L 8qA1.1 NA NA chr8 3476102 TACxGTC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 157 0 0 11.433316 0.065421 0.02 2.345509 100 7 2807 193 60 60 0 0 AA 11.413687 38 0 1033 0 KEEP + 1700019B03Rik NO B[a]P_1 chr8 35936160 35936160 C A exonic Tnks nonsynonymous SNV NM_175091:c.G1357T:p.D453Y exonic Tnks nonsynonymous SNV uc009lku.1:c.G325T:p.D109Y exonic ENSMUSG00000031529 nonsynonymous SNV ENSMUST00000033929:c.G1357T:p.D453Y 8qA4 NA NA chr8 35936160 GATxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 224 2 0 38.318597 0.171171 0.02 2.515832 92 19 2444 513 60 60 0 0 CC 26.407719 88 0 2350 0 KEEP - Tnks YES B[a]P_1 chr8 4258407 4258407 C A exonic Ctxn1 nonsynonymous SNV NM_183315:c.G223T:p.G75W exonic Ctxn1 nonsynonymous SNV uc009ktp.2:c.G223T:p.G75W exonic ENSMUSG00000048644 nonsynonymous SNV ENSMUST00000053252:c.G223T:p.G75W 8qA1.1 NA NA chr8 4258407 GCCxGCG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 232 0 0 27.225764 0.112903 0.02 2.305174 110 14 2780 395 60 60 0 0 CC 22.827799 76 0 1915 0 KEEP - Ctxn1 YES B[a]P_1 chr8 44272997 44272997 C A exonic Triml2 nonsynonymous SNV NM_001160412:c.C535A:p.R179S exonic Triml2 nonsynonymous SNV uc012gcx.1:c.C535A:p.R179S exonic ENSMUSG00000091490 nonsynonymous SNV ENSMUST00000163869:c.C535A:p.R179S 8qA4 NA NA chr8 44272997 CTGxGCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739203 0.739671 0.999366 59 0 0 10.075721 0.15625 0.02 -0.279713 27 5 677 137 60 60 0 0 CC 5.110991 17 0 450 0 KEEP + Triml2 YES B[a]P_1 chr8 46400883 46400883 A C intronic Cyp4v3 NA NA intronic Cyp4v3 NA NA intronic ENSMUSG00000079057 NA NA 8qB1.1 NA NA chr8 46400883 AAAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918072 0.918171 0.999892 78 0 0 6.69732 0.090909 0.02 -0.385821 40 4 1109 106 60 60 0 0 AA 6.918175 23 0 641 0 KEEP - Cyp4v3 NO B[a]P_1 chr8 46857902 46857902 C G exonic Sorbs2 nonsynonymous SNV NM_001205219:c.C694G:p.P232A exonic Sorbs2 nonsynonymous SNV uc009lph.1:c.C277G:p.P93A exonic ENSMUSG00000031626 nonsynonymous SNV ENSMUST00000125295:c.C211G:p.P71A 8qB1.1 NA NA chr8 46857902 TCGxCCT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835658 0.835716 0.999931 64 0 0 11.629452 0.166667 0.02 -0.324355 30 6 819 158 60 60 0 0 CC 7.516093 25 0 670 0 KEEP + Sorbs2 NO B[a]P_1 chr8 47654015 47654015 C G exonic Mlf1ip nonsynonymous SNV NM_027973:c.C646G:p.R216G exonic Mlf1ip nonsynonymous SNV uc012gdk.1:c.C196G:p.R66G exonic ENSMUSG00000031629 nonsynonymous SNV ENSMUST00000093518:c.C196G:p.R66G 8qB1.1 NA NA chr8 47654015 AGGxGCG C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.98794 0.987943 0.999997 134 0 0 19.09058 0.15 0.02 1.267882 51 9 1327 258 60 60 0 0 CC 13.81947 46 0 1132 0 KEEP + Mlf1ip NO B[a]P_1 chr8 55666202 55666202 C T exonic Asb5 synonymous SNV NM_029569:c.C220T:p.L74L exonic Asb5 synonymous SNV uc009lse.1:c.C220T:p.L74L exonic ENSMUSG00000031519 synonymous SNV ENSMUST00000033918:c.C220T:p.L74L 8qB1.3 NA NA chr8 55666202 CCAxTGC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 171 0 0 25.197207 0.196721 0.02 1.062482 49 12 1351 326 60 60 0 0 CC 19.853576 66 0 1870 0 KEEP + Asb5 NO B[a]P_1 chr8 58351225 58351225 G T exonic Adam29 nonsynonymous SNV NM_175939:c.C990A:p.N330K exonic Adam29 nonsynonymous SNV uc009lsm.2:c.C990A:p.N330K exonic ENSMUSG00000046258 nonsynonymous SNV ENSMUST00000053441:c.C990A:p.N330K 8qB2 NA NA chr8 58351225 AAGxTTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 111 0 0 31.162023 0.259259 0.02 1.12387 40 14 1090 379 60 60 0 0 GG 14.136448 47 0 1300 0 KEEP - Adam29 YES B[a]P_1 chr8 58798929 58798929 C A exonic Hpgd nonsynonymous SNV NM_008278:c.C737A:p.T246K exonic Hpgd nonsynonymous SNV uc009lso.1:c.C737A:p.T246K exonic ENSMUSG00000031613 nonsynonymous SNV ENSMUST00000034026:c.C737A:p.T246K 8qB2 NA NA chr8 58798929 TCAxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.998867 0.998867 1 158 2 0 32.0799 0.194805 0.02 1.02042 62 15 1543 414 60 60 0 0 CC 17.730363 59 0 1489 0 KEEP + Hpgd YES B[a]P_1 chr8 64355775 64355775 T A exonic Palld nonsynonymous SNV NM_001081390:c.A864T:p.E288D exonic Palld nonsynonymous SNV uc009luf.1:c.A864T:p.E288D exonic ENSMUSG00000058056 nonsynonymous SNV ENSMUST00000036243:c.A864T:p.E288D 8qB3.1 NA NA chr8 64355775 AACxTCT T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 331 0 0 23.879658 0.076923 0.02 3.187271 168 14 4750 386 60 60 0 0 TT 31.878722 106 0 2955 0 KEEP - Palld NO B[a]P_1 chr8 72696346 72696346 A T intronic Tmem161a NA NA intronic Tmem161a NA NA intronic ENSMUSG00000002342 NA NA 8qB3.3 NA NA chr8 72696346 AGCxGGC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 225 4 0 13.744501 0.066116 0.02 2.427994 113 8 3192 227 60 60 0 0 AA 20.447655 68 0 1866 0 KEEP + Tmem161a NO B[a]P_1 chr8 72916910 72916910 C G exonic Crtc1 nonsynonymous SNV NM_001004062:c.G919C:p.V307L exonic Crtc1 nonsynonymous SNV uc009mae.1:c.G919C:p.V307L exonic ENSMUSG00000003575 nonsynonymous SNV ENSMUST00000076615:c.G919C:p.V307L 8qB3.3 NA NA chr8 72916910 TGAxGAC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934361 0.934492 0.99986 76 0 0 27.766215 0.26087 0.02 -0.403097 34 12 826 335 60 60 0 0 CC 5.706271 19 0 455 0 KEEP - Crtc1 NO B[a]P_1 chr8 73376880 73376880 G C exonic Kcnn1 nonsynonymous SNV NM_032397:c.C584G:p.A195G exonic Kcnn1 nonsynonymous SNV uc012gfj.1:c.C713G:p.A238G exonic ENSMUSG00000002908 nonsynonymous SNV ENSMUST00000110078:c.C584G:p.A195G 8qB3.3 NA NA chr8 73376880 ATGxCAC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99716 0.997163 0.999997 117 0 0 8.147261 0.070423 0.02 1.07268 66 5 1817 136 60 60 0 0 GG 8.385926 28 0 742 0 KEEP - Kcnn1 NO B[a]P_1 chr8 74086500 74086500 C A UTR3 Nxnl1 NA NA UTR3 Nxnl1 NA NA UTR3 ENSMUSG00000034829 NA NA 8qB3.3 NA NA chr8 74086500 TACxCTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 148 0 0 55.193167 0.258065 0.02 0.870971 69 24 1925 668 60 60 0 1 CC 12.63162 42 0 1156 0 KEEP - Nxnl1 YES B[a]P_1 chr8 74179636 74179636 C A exonic Unc13a nonsynonymous SNV NM_001029873:c.G1471T:p.G491C exonic Unc13a nonsynonymous SNV uc009mei.2:c.G1471T:p.G491C exonic ENSMUSG00000034799 nonsynonymous SNV ENSMUST00000030170:c.G1471T:p.G491C 8qB3.3 NA NA chr8 74179636 CACxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 301 2 0 111.059086 0.285714 0.02 3.603899 120 48 3369 1318 60 60 0 0 CC 28.269495 94 0 2640 0 KEEP - Unc13a YES B[a]P_1 chr8 75235733 75235733 C A exonic Nwd1 synonymous SNV NM_176940:c.C4509A:p.A1503A exonic Nwd1 synonymous SNV uc009mgm.2:c.C4509A:p.A1503A exonic ENSMUSG00000048148 synonymous SNV ENSMUST00000093427:c.C4635A:p.A1545A 8qB3.3 NA NA chr8 75235733 GGCxGTA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.454842 0.457757 0.993634 34 0 0 17.368422 0.318182 0.02 -0.192733 15 7 338 200 60 60 0 0 CC 3.596389 12 0 257 0 KEEP + Nwd1 YES B[a]P_1 chr8 80806155 80806155 C A intronic Ttc29 NA NA intronic Ttc29 NA NA intronic ENSMUSG00000037101 NA NA 8qC1 NA NA chr8 80806155 GAGxTCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 190 0 0 53.311139 0.220183 0.02 2.435 85 24 2312 668 60 60 0 0 CC 19.248313 64 0 1757 0 KEEP + Ttc29 YES B[a]P_1 chr8 86590234 86590234 C T upstream Rfx1 NA NA upstream Rfx1 NA NA exonic ENSMUSG00000056753 synonymous SNV ENSMUST00000071067:c.G264A:p.Q88Q 8qC3 NA NA chr8 86590234 CGCxTGT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 123 1 0 45.763601 0.296875 0.02 1.214826 45 19 1258 536 60 60 0 0 CC 13.535577 45 0 1262 0 KEEP NA Rfx1 NO B[a]P_1 chr8 86736580 86736580 T A exonic Zswim4 synonymous SNV NM_172503:c.A2571T:p.T857T exonic Zswim4 synonymous SNV uc009mmg.1:c.A2571T:p.T857T exonic ENSMUSG00000035671 synonymous SNV ENSMUST00000039480:c.A2571T:p.T857T 8qC3 NA NA chr8 86736580 AGCxGTA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 194 1 0 47.336027 0.191304 0.02 2.373324 93 22 2618 612 60 60 0 0 TT 16.541764 55 0 1514 0 KEEP - Zswim4 NO B[a]P_1 chr8 87237369 87237369 C A intronic Nfix NA NA intronic Nfix NA NA intronic ENSMUSG00000001911 NA NA 8qC3 NA NA chr8 87237369 AAGxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992091 0.992094 0.999997 104 1 0 18.082341 0.142857 0.02 1.044968 54 9 1488 250 60 60 0 0 CC 9.324712 31 0 872 0 KEEP - Nfix YES B[a]P_1 chr8 89062031 89062031 G T intronic Abcc12 NA NA intronic Abcc12 NA NA UTR3 ENSMUSG00000036872 NA NA 8qC3 NA NA chr8 89062031 AGAxGAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959793 0.959859 0.999931 86 0 0 15.776738 0.16 0.02 -0.43847 42 8 1201 215 60 60 0 0 GG 7.520873 25 0 719 0 KEEP - Abcc12 YES B[a]P_1 chr8 93575105 93575105 C G exonic Chd9 nonsynonymous SNV NM_177224:c.C7844G:p.A2615G exonic Chd9 nonsynonymous SNV uc009msi.2:c.C7892G:p.A2631G exonic ENSMUSG00000056608 nonsynonymous SNV ENSMUST00000048665:c.C7844G:p.A2615G 8qC5 NA NA chr8 93575105 AGGxTAC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963642 0.963774 0.999863 74 0 0 35.540388 0.294118 0.02 1.346315 36 15 1005 418 60 60 0 0 CC 6.015727 20 0 557 0 KEEP + Chd9 NO B[a]P_1 chr8 97046802 97046802 A G exonic Nlrc5 nonsynonymous SNV NM_001033207:c.A5395G:p.I1799V exonic Nlrc5 nonsynonymous SNV uc012gio.1:c.A5395G:p.I1799V ncRNA_exonic ENSMUSG00000074151 NA NA 8qC5 NA NA chr8 97046802 CAAxTTG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954366 0.954491 0.999869 75 0 0 9.083161 0.102041 0.02 -0.429482 44 5 1159 137 60 60 0 0 AA 6.314048 21 0 559 0 KEEP + Nlrc5 NO B[a]P_1 chr8 97296125 97296125 G T UTR5 Cx3cl1 NA NA UTR5 Cx3cl1 NA NA UTR5 ENSMUSG00000031778 NA NA 8qC5 NA NA chr8 97296125 CACxGCC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 0.999999 134 0 0 32.545146 0.180723 0.02 1.066685 68 15 1557 424 60 60 0 0 GG 10.806279 36 0 824 0 KEEP + Cx3cl1 YES B[a]P_1 chr8 97427248 97427248 G A exonic Ccdc102a nonsynonymous SNV NM_001033533:c.C1564T:p.R522C exonic Ccdc102a nonsynonymous SNV uc009mxh.2:c.C1564T:p.R522C exonic ENSMUSG00000063605 nonsynonymous SNV ENSMUST00000077955:c.C1564T:p.R522C 8qD1 NA NA chr8 97427248 TACxAAT G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 158 0 0 66.790653 0.307692 0.02 0.898347 63 28 1632 778 60 60 0 0 GG 16.240112 54 0 1497 0 KEEP - Ccdc102a NO B[a]P_1 chr8 97465481 97465481 G T exonic Gpr114 nonsynonymous SNV NM_001033468:c.G1270T:p.V424L exonic Gpr114 nonsynonymous SNV uc009mxi.2:c.G1270T:p.V424L exonic ENSMUSG00000061577 nonsynonymous SNV ENSMUST00000074570:c.G1270T:p.V424L 8qD1 NA NA chr8 97465481 CTGxTGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877584 0.877708 0.999859 68 0 0 11.82577 0.15 0.02 -0.35073 34 6 942 163 60 60 0 0 GG 5.366742 18 0 472 0 KEEP + Gpr114 YES B[a]P_1 chr8 97853242 97853242 C A exonic Zfp319 nonsynonymous SNV NM_024467:c.G232T:p.G78C exonic Zfp319 nonsynonymous SNV uc009myf.1:c.G232T:p.G78C exonic ENSMUSG00000046556 nonsynonymous SNV ENSMUST00000057717:c.G232T:p.G78C 8qD1 NA NA chr8 97853242 CGCxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998855 0.998867 0.999988 111 0 0 60.917066 0.337662 0.02 1.020076 51 26 1438 699 60 60 0 0 CC 8.112161 27 0 745 0 KEEP - Zfp319 YES B[a]P_1 chr9 102444330 102444330 T A exonic Ky nonsynonymous SNV NM_024291:c.T1205A:p.L402Q exonic Ky nonsynonymous SNV uc009rfp.1:c.T1205A:p.L402Q exonic ENSMUSG00000035606 nonsynonymous SNV ENSMUST00000039390:c.T1205A:p.L402Q 9qF1 NA NA chr9 102444330 AGCxGGA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 198 0 0 60.544574 0.242991 0.02 2.648762 81 26 2264 739 60 60 0 0 TT 20.445092 68 0 1859 0 KEEP + Ky NO B[a]P_1 chr9 103249359 103249359 G T exonic Topbp1 nonsynonymous SNV NM_176979:c.G4354T:p.A1452S exonic Topbp1 nonsynonymous SNV uc009rgl.1:c.G4354T:p.A1452S exonic ENSMUSG00000032555 nonsynonymous SNV ENSMUST00000035164:c.G4354T:p.A1452S 9qF1 NA NA chr9 103249359 GAGxCTA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 129 0 0 48.702032 0.295775 0.02 1.073033 50 21 1370 574 60 60 0 0 GG 11.43005 38 0 1059 0 KEEP + Topbp1 YES B[a]P_1 chr9 103401506 103401506 G A exonic Tmem108 nonsynonymous SNV NM_178638:c.C1073T:p.P358L exonic Tmem108 nonsynonymous SNV uc009rgx.2:c.C1073T:p.P358L exonic ENSMUSG00000042757 nonsynonymous SNV ENSMUST00000163573:c.C1073T:p.P358L 9qF1 NA NA chr9 103401506 GTGxGCC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 260 0 0 75.396179 0.24812 0.02 2.215677 100 33 2747 920 60 60 0 0 GG 27.65458 92 0 2483 0 KEEP - Tmem108 NO B[a]P_1 chr9 104133043 104133043 C A exonic Dnajc13 synonymous SNV NM_001163026:c.G768T:p.A256A exonic Dnajc13 synonymous SNV uc009rhj.2:c.G768T:p.A256A exonic ENSMUSG00000032560 synonymous SNV ENSMUST00000060084:c.G768T:p.A256A 9qF1 NA NA chr9 104133043 GACxGCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 277 0 0 36.453509 0.168317 0.02 2.604148 84 17 1986 482 60 60 0 0 CC 40.256792 134 0 3314 0 KEEP - Dnajc13 YES B[a]P_1 chr9 106126397 106126397 A T exonic Tlr9 synonymous SNV NM_031178:c.A555T:p.T185T exonic Tlr9 synonymous SNV uc009rjh.1:c.A555T:p.T185T exonic ENSMUSG00000045322 synonymous SNV ENSMUST00000062241:c.A555T:p.T185T 9qF1 NA NA chr9 106126397 CACxGGA A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 197 0 0 67.260127 0.233871 0.02 2.393011 95 29 2658 827 60 60 0 0 AA 15.637707 52 0 1422 0 KEEP + Tlr9 NO B[a]P_1 chr9 107965156 107965156 T A intronic Rnf123 NA NA intronic Rnf123 NA NA intronic ENSMUSG00000041528 NA NA 9qF2 NA NA chr9 107965156 GTGxGGA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 147 0 0 51.406784 0.278481 0.02 1.002553 57 22 1542 612 60 60 0 0 TT 15.335468 51 0 1369 0 KEEP - Rnf123 NO B[a]P_1 chr9 107965157 107965157 G A intronic Rnf123 NA NA intronic Rnf123 NA NA intronic ENSMUSG00000041528 NA NA 9qF2 NA NA chr9 107965157 TGTxGAA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 149 0 0 54.682372 0.291139 0.02 1.002486 56 23 1555 644 60 60 0 0 GG 15.64309 52 0 1494 0 KEEP - Rnf123 NO B[a]P_1 chr9 108008607 108008607 G A exonic Bsn synonymous SNV NM_007567:c.C10578T:p.P3526P exonic Bsn synonymous SNV uc009rov.1:c.C10578T:p.P3526P exonic ENSMUSG00000032589 synonymous SNV ENSMUST00000035208:c.C10578T:p.P3526P 9qF2 NA NA chr9 108008607 TGCxGGG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 222 0 0 32.125879 0.126866 0.02 2.41465 117 17 2849 460 60 60 0 0 GG 20.126539 67 0 1648 0 KEEP - Bsn NO B[a]P_1 chr9 108028358 108028358 G C exonic Bsn nonsynonymous SNV NM_007567:c.C1178G:p.A393G exonic Bsn nonsynonymous SNV uc009rov.1:c.C1178G:p.A393G exonic ENSMUSG00000032589 nonsynonymous SNV ENSMUST00000035208:c.C1178G:p.A393G 9qF2 NA NA chr9 108028358 CCCxCCT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99716 0.997163 0.999997 115 0 0 20.543423 0.15625 0.02 1.073716 54 10 1266 278 60 60 0 0 GG 9.307447 31 0 736 0 KEEP - Bsn NO B[a]P_1 chr9 109012993 109012993 C T exonic Plxnb1 nonsynonymous SNV NM_172775:c.C4291T:p.H1431Y exonic Plxnb1 nonsynonymous SNV uc009rrz.2:c.C4291T:p.H1431Y exonic ENSMUSG00000053646 nonsynonymous SNV ENSMUST00000072093:c.C4291T:p.H1431Y 9qF2 NA NA chr9 109012993 CCAxATC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 238 2 0 61.453134 0.216418 0.02 2.01982 105 29 2843 780 60 60 0 0 CC 22.253818 74 0 2075 0 KEEP + Plxnb1 NO B[a]P_1 chr9 109097518 109097518 C T intronic Fbxw13 NA NA intronic Fbxw13 NA NA intronic ENSMUSG00000049314 NA NA 9qF2 NA NA chr9 109097518 CCCxTCT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 496 2 0 97.99261 0.205607 0.02 5.100959 170 44 4763 1242 60 60 0 0 CC 59.548122 198 0 5552 0 KEEP - Fbxw13 NO B[a]P_1 chr9 109188972 109188972 G T exonic Fbxw14 synonymous SNV NM_015793:c.C243A:p.T81T exonic Fbxw14 synonymous SNV uc009rse.1:c.C243A:p.T81T exonic ENSMUSG00000054087 synonymous SNV ENSMUST00000066901:c.C243A:p.T81T 9qF2 "Score=0.928854;Name=No.105615,chr9:109200006" NA chr9 109188972 CCGxGTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 233 1 33 12.367566 0.085366 0.02 0.976167 75 7 2109 194 60 46 0 0 GG 31.281108 104 0 2900 0 KEEP - Fbxw14 YES B[a]P_1 chr9 109188979 109188979 G T exonic Fbxw14 nonsynonymous SNV NM_015793:c.C236A:p.A79D exonic Fbxw14 nonsynonymous SNV uc009rse.1:c.C236A:p.A79D exonic ENSMUSG00000054087 nonsynonymous SNV ENSMUST00000066901:c.C236A:p.A79D 9qF2 "Score=0.928854;Name=No.105615,chr9:109200006" NA chr9 109188979 TTGxCGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 247 1 32 14.333906 0.091954 0.02 0.923964 79 8 2166 221 60 60 0 0 GG 33.253902 111 0 3035 0 KEEP - Fbxw14 YES B[a]P_1 chr9 109281383 109281383 T G exonic Fbxw22 nonsynonymous SNV NM_001014395:c.A1333C:p.I445L exonic Fbxw22 nonsynonymous SNV uc012hbd.1:c.A916C:p.I306L exonic ENSMUSG00000070324 nonsynonymous SNV ENSMUST00000080626:c.A1333C:p.I445L 9qF2 "Score=0.91713;Name=No.105620,chr9:109195425" NA chr9 109281383 AAAxTAT T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 594 5 0 110.512658 0.222707 0.02 5.067872 178 51 4877 1389 60 60 0 0 TT 88.372524 294 0 8075 0 KEEP - Fbxw22 NO B[a]P_1 chr9 110800042 110800042 C G exonic Als2cl nonsynonymous SNV NM_001146059:c.C2507G:p.A836G exonic Als2cl nonsynonymous SNV uc009rvc.2:c.C2507G:p.A836G exonic ENSMUSG00000044037 nonsynonymous SNV ENSMUST00000084927:c.C2198G:p.A733G 9qF3 NA NA chr9 110800042 CGGxCAC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 117 0 0 7.423082 0.097561 0.02 -0.429632 37 4 1023 112 70 60 0 0 CC 15.640124 52 0 1443 0 KEEP + Als2cl NO B[a]P_1 chr9 111116813 111116813 G T intronic Lrrfip2 NA NA intronic Lrrfip2 NA NA intronic ENSMUSG00000032497 NA NA 9qF3 NA NA chr9 111116813 GGTxTCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 155 0 0 11.919425 0.081395 0.02 0.843374 79 7 2102 191 60 60 0 0 GG 15.335985 51 0 1386 0 KEEP + Lrrfip2 YES B[a]P_1 chr9 111506718 111506718 T A intronic Stac NA NA intronic Stac NA NA intronic ENSMUSG00000032502 NA NA 9qF3 NA NA chr9 111506718 GCCxGGG T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.487421 0.490544 0.993634 38 0 0 8.695598 0.173913 0.02 -0.201701 19 4 539 114 60 60 0 0 TT 3.607881 12 0 320 0 KEEP - Stac NO B[a]P_1 chr9 119182000 119182000 C A intronic Oxsr1 NA NA intronic Oxsr1 NA NA intronic ENSMUSG00000036737 NA NA 9qF3 NA NA chr9 119182000 ACAxACA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 224 0 0 30.974316 0.212121 0.02 1.116532 52 14 1414 391 60 60 0 0 CC 36.074147 120 0 3287 0 KEEP - Oxsr1 YES B[a]P_1 chr9 119182025 119182025 C A intronic Oxsr1 NA NA intronic Oxsr1 NA NA intronic ENSMUSG00000036737 NA NA 9qF3 NA NA chr9 119182025 ACAxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 247 0 0 34.093966 0.223881 0.02 1.10808 52 15 1279 424 60 60 0 0 CC 37.848661 126 0 3143 0 KEEP - Oxsr1 YES B[a]P_1 chr9 119960784 119960784 C A exonic Cx3cr1 nonsynonymous SNV NM_009987:c.G669T:p.K223N exonic Cx3cr1 nonsynonymous SNV uc009sbz.1:c.G669T:p.K223N exonic ENSMUSG00000052336 nonsynonymous SNV ENSMUST00000064165:c.G669T:p.K223N 9qF4 NA NA chr9 119960784 ATTxTTG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 110 1 0 12.41212 0.114754 0.02 0.965084 54 7 1537 185 60 60 0 0 CC 11.73268 39 0 1124 0 KEEP - Cx3cr1 YES B[a]P_1 chr9 122085508 122085508 C A UTR3 Ano10 NA NA UTR3 Ano10 NA NA UTR3 ENSMUSG00000037949 NA NA 9qF4 NA NA chr9 122085508 GGAxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997551 0.997553 0.999998 127 0 0 22.590747 0.152778 0.02 1.063927 61 11 1653 307 60 60 0 0 CC 9.923564 33 0 896 0 KEEP - Ano10 YES B[a]P_1 chr9 123368624 123368624 C G exonic Lars2 nonsynonymous SNV NM_153168:c.C2416G:p.P806A exonic Lars2 nonsynonymous SNV uc009sgd.1:c.C2416G:p.P806A exonic ENSMUSG00000035202 nonsynonymous SNV ENSMUST00000038863:c.C2416G:p.P806A 9qF4 NA NA chr9 123368624 GTAxCAA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 190 0 0 39.198187 0.173077 0.02 2.66716 86 18 2328 514 60 60 0 1 CC 17.728358 59 0 1593 0 KEEP + Lars2 NO B[a]P_1 chr9 123541302 123541302 A G exonic Slc6a20b nonsynonymous SNV NM_011731:c.T176C:p.L59P exonic Slc6a20b nonsynonymous SNV uc009sgi.2:c.T176C:p.L59P exonic ENSMUSG00000025243 nonsynonymous SNV ENSMUST00000026273:c.T176C:p.L59P 9qF4 NA NA chr9 123541302 ACAxGTA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98794 0.987943 0.999997 102 0 0 26.589247 0.20339 0.02 1.267378 47 12 1326 338 60 60 0 0 AA 8.421246 28 0 773 0 KEEP - Slc6a20b NO B[a]P_1 chr9 14609890 14609890 G T exonic Mre11a synonymous SNV NM_018736:c.G936T:p.V312V exonic Mre11a synonymous SNV uc009ofc.1:c.G936T:p.V312V exonic ENSMUSG00000031928 synonymous SNV ENSMUST00000034405:c.G936T:p.V312V 9qA2 NA NA chr9 14609890 CGTxGTT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 143 0 0 31.478479 0.212121 0.02 1.116857 52 14 1400 396 60 60 0 0 GG 16.4697 55 0 1494 0 KEEP + Mre11a YES B[a]P_1 chr9 19301799 19301799 G T exonic Olfr851 synonymous SNV NM_146905:c.G606T:p.A202A exonic Olfr851 synonymous SNV uc009ohl.1:c.G606T:p.A202A exonic ENSMUSG00000052625 synonymous SNV ENSMUST00000064582:c.G606T:p.A202A 9qA2 NA NA chr9 19301799 TGCxACC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.995083 0.995084 1 128 0 0 68.29055 0.41791 0.02 1.108151 39 28 1013 747 60 60 0 0 GG 16.835681 56 0 1500 0 KEEP + Olfr851 YES B[a]P_1 chr9 20575662 20575662 A C exonic Col5a3 synonymous SNV NM_016919:c.T4929G:p.T1643T exonic Col5a3 synonymous SNV uc009ojf.1:c.T4929G:p.T1643T exonic ENSMUSG00000004098 synonymous SNV ENSMUST00000004201:c.T4929G:p.T1643T 9qA3 NA NA chr9 20575662 GTAxGTG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 238 2 0 28.0393 0.133858 0.02 2.081348 110 17 3062 416 60 60 0 0 AA 25.565497 85 0 2364 0 KEEP - Col5a3 NO B[a]P_1 chr9 20576771 20576771 G C exonic Col5a3 synonymous SNV NM_016919:c.C4632G:p.R1544R exonic Col5a3 synonymous SNV uc009ojf.1:c.C4632G:p.R1544R exonic ENSMUSG00000004098 synonymous SNV ENSMUST00000004201:c.C4632G:p.R1544R 9qA3 NA NA chr9 20576771 GTCxCGG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 220 0 0 38.904371 0.142857 0.02 2.323669 114 19 2833 535 60 60 0 0 GG 17.314145 58 0 1415 0 KEEP - Col5a3 NO B[a]P_1 chr9 20714184 20714184 G C exonic Dnmt1 nonsynonymous SNV NM_001199431:c.C4207G:p.L1403V exonic Dnmt1 nonsynonymous SNV uc009ojn.2:c.C694G:p.L232V exonic ENSMUSG00000004099 nonsynonymous SNV ENSMUST00000004202:c.C4207G:p.L1403V 9qA3 NA NA chr9 20714184 GCAxCTG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 243 0 0 39.396292 0.140845 0.02 2.145366 122 20 3399 549 60 60 0 0 GG 21.332947 71 0 1958 0 KEEP - Dnmt1 NO B[a]P_1 chr9 20715897 20715897 G C exonic Dnmt1 synonymous SNV NM_001199431:c.C3873G:p.V1291V exonic Dnmt1 synonymous SNV uc009ojn.2:c.C360G:p.V120V exonic ENSMUSG00000004099 synonymous SNV ENSMUST00000004202:c.C3873G:p.V1291V 9qA3 NA NA chr9 20715897 GCGxACC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954366 0.954491 0.999869 78 0 0 11.715819 0.125 0.02 -0.429707 42 6 1196 167 60 60 0 0 GG 6.314871 21 0 578 0 KEEP - Dnmt1 NO B[a]P_1 chr9 21830957 21830957 G T exonic Elavl3 nonsynonymous SNV NM_010487:c.C482A:p.A161D exonic Elavl3 nonsynonymous SNV uc009onn.1:c.C77A:p.A26D exonic ENSMUSG00000003410 nonsynonymous SNV ENSMUST00000003501:c.C482A:p.A161D 9qA3 NA NA chr9 21830957 GTGxCCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 279 0 0 76.092253 0.239437 0.02 2.145609 108 34 2985 938 60 60 0 0 GG 30.077897 100 0 2776 0 KEEP - Elavl3 YES B[a]P_1 chr9 27141492 27141492 C A exonic Igsf9b nonsynonymous SNV NM_001129787:c.C3157A:p.P1053T exonic Igsf9b nonsynonymous SNV uc009oqm.2:c.C3157A:p.P1053T exonic ENSMUSG00000034275 nonsynonymous SNV ENSMUST00000133213:c.C3157A:p.P1053T 9qA4 NA NA chr9 27141492 ACCxCAG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 105 0 0 50.851961 0.408163 0.02 -0.429633 29 20 800 557 60 60 0 0 CC 12.01864 40 0 1086 0 KEEP + Igsf9b YES B[a]P_1 chr9 31217820 31217820 A T exonic Nfrkb nonsynonymous SNV NM_172766:c.A2227T:p.S743C exonic Nfrkb nonsynonymous SNV uc012gpy.1:c.A745T:p.S249C exonic ENSMUSG00000042185 nonsynonymous SNV ENSMUST00000086167:c.A2227T:p.S743C 9qA4 NA NA chr9 31217820 AGAxGTG A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 242 0 0 17.720365 0.084746 0.02 2.338145 108 10 3041 278 60 60 0 0 AA 26.463187 88 0 2418 0 KEEP + Nfrkb NO B[a]P_1 chr9 35943207 35943207 G T ncRNA_exonic Gm3434 NA NA ncRNA_exonic Gm3434 NA NA intergenic "ENSMUSG00000091411(dist=6843),ENSMUSG00000066767(dist=121436)" NA NA 9qA4 "Score=0.936113;Name=No.105351,chr9:35642552" NA chr9 35943207 GTGxGTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 93 1 0 12.455539 0.146341 0.02 -0.359463 35 6 972 170 60 60 0 0 GG 8.723131 29 0 812 0 KEEP - Gm3434 YES B[a]P_1 chr9 39269366 39269366 A T exonic Olfr954 nonsynonymous SNV NM_146331:c.A349T:p.T117S exonic Olfr954 nonsynonymous SNV uc009oxy.1:c.A349T:p.T117S exonic ENSMUSG00000064173 nonsynonymous SNV ENSMUST00000080329:c.A349T:p.T117S 9qA5.1 "Score=0.927039;Name=No.105380,chr9:39200153" NA chr9 39269366 TACxCAT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 266 0 0 15.340416 0.064748 0.02 2.171644 130 9 3549 255 60 60 0 0 AA 31.574655 105 0 2818 0 KEEP + Olfr954 NO B[a]P_1 chr9 39899863 39899863 G T exonic Olfr983 synonymous SNV NM_146827:c.C687A:p.L229L exonic Olfr983 synonymous SNV uc009ozb.2:c.C687A:p.L229L exonic ENSMUSG00000044205 synonymous SNV ENSMUST00000050996:c.C687A:p.L229L 9qA5.1 NA NA chr9 39899863 GCGxAGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 107 0 0 34.961775 0.271186 0.02 1.080055 43 16 1200 423 60 60 0 0 GG 11.426394 38 0 1063 0 KEEP - Olfr983 YES B[a]P_1 chr9 40630206 40630206 A T intergenic "Hspa8(dist=16924),Bsx(dist=52004)" NA NA intergenic "Hspa8(dist=16923),Bsx(dist=52004)" NA NA intergenic "ENSMUSG00000015656(dist=16923),ENSMUSG00000054360(dist=52004)" NA NA 9qA5.1 NA NA chr9 40630206 ATCxTCT A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899275 0.899314 0.999957 81 0 0 19.921069 0.214286 0.02 -0.368246 33 9 883 251 60 60 0 0 AA 7.819675 26 0 709 0 KEEP NA Hspa8 NO B[a]P_1 chr9 40725752 40725752 G T intronic 4931429I11Rik NA NA intronic 4931429I11Rik NA NA intronic ENSMUSG00000032023 NA NA 9qA5.1 NA NA chr9 40725752 AAGxCAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.666177 0.668523 0.99649 46 0 0 24.457872 0.344828 0.02 -0.254291 19 10 523 278 60 60 0 0 GG 4.510706 15 0 407 0 KEEP - 4931429I11Rik YES B[a]P_1 chr9 42140570 42140570 T C exonic Tecta nonsynonymous SNV NM_009347:c.A6083G:p.K2028R exonic Tecta nonsynonymous SNV uc009pat.1:c.A653G:p.K218R exonic ENSMUSG00000037705 nonsynonymous SNV ENSMUST00000042190:c.A6083G:p.K2028R 9qA5.1 NA NA chr9 42140570 AACxTGA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 98 0 0 7.100941 0.081633 0.02 -0.429691 45 4 1269 112 60 60 0 0 TT 11.730123 39 0 1080 0 KEEP - Tecta NO B[a]P_1 chr9 43911827 43911827 T C exonic Mfrp nonsynonymous SNV NM_001190314:c.T967C:p.Y323H exonic Mfrp nonsynonymous SNV uc009pbr.2:c.T967C:p.Y323H exonic ENSMUSG00000034739 nonsynonymous SNV ENSMUST00000034654:c.T967C:p.Y323H 9qA5.1 NA NA chr9 43911827 AACxATC T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 129 1 0 15.642192 0.121212 0.02 1.018867 58 8 1537 224 60 60 0 0 TT 11.978334 40 0 1044 0 KEEP - Mfrp NO B[a]P_1 chr9 44057974 44057974 A G exonic Pdzd3 nonsynonymous SNV NM_133226:c.T472C:p.C158R exonic Pdzd3 nonsynonymous SNV uc009pch.1:c.T472C:p.C158R exonic ENSMUSG00000032105 nonsynonymous SNV ENSMUST00000034618:c.T472C:p.C158R 9qA5.2 NA NA chr9 44057974 GGCxCAA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.455189 0.457757 0.994391 37 0 0 21.586977 0.5 0.02 -0.192542 11 11 308 230 60 60 0 0 AA 3.607133 12 0 310 0 KEEP - Pdzd3 NO B[a]P_1 chr9 44089642 44089642 C T exonic Abcg4 nonsynonymous SNV NM_138955:c.G489A:p.M163I exonic Abcg4 nonsynonymous SNV uc009pcp.1:c.G489A:p.M163I exonic ENSMUSG00000032131 nonsynonymous SNV ENSMUST00000034648:c.G489A:p.M163I 9qA5.2 NA NA chr9 44089642 CACxATC C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 120 0 0 49.798101 0.295775 0.02 1.170984 50 21 1392 585 60 60 0 0 CC 13.836895 46 0 1294 0 KEEP - Abcg4 NO B[a]P_1 chr9 44524165 44524165 C G exonic Phldb1 synonymous SNV NM_153537:c.G1065C:p.G355G exonic Phldb1 synonymous SNV uc009peg.1:c.G705C:p.G235G exonic ENSMUSG00000048537 synonymous SNV ENSMUST00000134465:c.G1065C:p.G355G 9qA5.2 NA NA chr9 44524165 CTGxCCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 613 2 0 91.666032 0.178138 0.02 4.713615 203 44 5623 1209 60 60 0 0 CC 83.504686 278 0 7541 0 KEEP - Phldb1 NO B[a]P_1 chr9 45668328 45668328 C G exonic Bace1 nonsynonymous SNV NM_001145947:c.C1354G:p.L452V exonic Bace1 nonsynonymous SNV uc009pgi.2:c.C1036G:p.L346V exonic ENSMUSG00000032086 nonsynonymous SNV ENSMUST00000078111:c.C1354G:p.L452V 9qA5.2 NA NA chr9 45668328 TGCxTGC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 165 0 0 10.823585 0.074766 0.02 2.063128 99 8 2779 193 60 60 0 0 CC 12.612545 42 0 1154 0 KEEP + Bace1 NO B[a]P_1 chr9 46006327 46006327 A T exonic Sik3 nonsynonymous SNV NM_027498:c.A1525T:p.T509S exonic Sik3 nonsynonymous SNV uc009pha.1:c.A1177T:p.T393S exonic ENSMUSG00000034135 nonsynonymous SNV ENSMUST00000078669:c.A1351T:p.T451S 9qA5.2 NA NA chr9 46006327 TTCxCGC A T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 94 4 0 11.915471 0.125 0.02 -0.420895 42 6 1155 169 60 60 0 0 AA 11.428271 38 0 1030 0 KEEP + Sik3 NO B[a]P_1 chr9 46016123 46016123 G C exonic Sik3 nonsynonymous SNV NM_027498:c.G2071C:p.G691R exonic Sik3 nonsynonymous SNV uc009pgz.2:c.G2071C:p.G691R exonic ENSMUSG00000034135 nonsynonymous SNV ENSMUST00000120463:c.G1921C:p.G641R 9qA5.2 NA NA chr9 46016123 ATGxGCA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 136 0 0 30.359545 0.216867 0.02 0.967932 65 18 1795 406 60 60 0 0 GG 13.535617 45 0 1254 0 KEEP + Sik3 NO B[a]P_1 chr9 47597893 47597893 G A exonic Cadm1 nonsynonymous SNV NM_001025600:c.G394A:p.D132N exonic Cadm1 nonsynonymous SNV uc009phn.1:c.G394A:p.D132N exonic ENSMUSG00000032076 nonsynonymous SNV ENSMUST00000034581:c.G394A:p.D132N 9qA5.3 NA NA chr9 47597893 ACGxACC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 98 0 0 23.463348 0.263158 0.02 -0.359447 28 10 763 282 60 60 0 0 GG 11.637205 39 0 1009 0 KEEP + Cadm1 NO B[a]P_1 chr9 48910873 48910873 G T upstream Tmprss5 NA NA UTR5 Tmprss5 NA NA UTR5 ENSMUSG00000032268 NA NA 9qA5.3 NA NA chr9 48910873 GGAxCCT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999678 0.999678 1 194 0 0 33.00556 0.186047 0.02 0.941593 70 16 1897 433 60 60 0 0 GG 22.534412 78 1 2206 8 KEEP + Tmprss5 YES B[a]P_1 chr9 49223775 49223775 G T exonic Ankk1 synonymous SNV NM_172922:c.C2208A:p.P736P exonic Ankk1 synonymous SNV uc009pjb.1:c.C2208A:p.P736P exonic ENSMUSG00000032257 synonymous SNV ENSMUST00000034792:c.C2208A:p.P736P 9qA5.3 NA NA chr9 49223775 CAGxGGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 137 2 0 54.133417 0.348485 0.02 1.214947 43 23 1204 617 60 60 0 0 GG 14.430133 48 0 1321 0 KEEP - Ankk1 YES B[a]P_1 chr9 53262835 53262835 C T exonic Atm nonsynonymous SNV NM_007499:c.G7645A:p.E2549K exonic Atm nonsynonymous SNV uc012gtj.1:c.G7636A:p.E2546K exonic ENSMUSG00000034218 nonsynonymous SNV ENSMUST00000037440:c.G7636A:p.E2546K 9qA5.3 NA NA chr9 53262835 CTTxGTG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 137 0 0 11.157559 0.098361 0.02 1.151737 55 6 1461 168 60 60 0 0 CC 16.237285 54 0 1472 0 KEEP - Atm NO B[a]P_1 chr9 53664793 53664793 G C UTR3 Slc35f2 NA NA UTR3 Slc35f2 NA NA UTR3 ENSMUSG00000042195 NA NA 9qA5.3 NA NA chr9 53664793 ACAxACT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 147 0 0 31.550859 0.297872 0.02 0.948857 33 14 905 373 60 60 0 0 GG 16.241414 54 0 1508 0 KEEP + Slc35f2 NO B[a]P_1 chr9 54863838 54863838 G T exonic Chrna3 stopgain SNV NM_145129:c.C492A:p.Y164X exonic Chrna3 stopgain SNV uc009prx.1:c.C492A:p.Y164X exonic ENSMUSG00000032303 stopgain SNV ENSMUST00000034851:c.C492A:p.Y164X 9qB NA NA chr9 54863838 GAAxTAG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 137 0 0 14.678608 0.103896 0.02 1.020437 69 8 1855 220 60 60 0 0 GG 12.625105 42 0 1148 0 KEEP - Chrna3 YES B[a]P_1 chr9 55393363 55393363 G T UTR3 Isl2 NA NA UTR3 Isl2 NA NA UTR3 ENSMUSG00000032318 NA NA 9qB NA NA chr9 55393363 CCTxCCA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 DBSNP COVERED 0.808525 0.818465 0.987855 64 0 0 17.763175 0.235294 0.02 -0.306911 26 8 725 220 60 60 0 0 GG 6.917175 23 0 638 0 KEEP + Isl2 YES B[a]P_1 chr9 57549982 57549982 C A exonic Cyp1a1 synonymous SNV NM_001136059:c.C1158A:p.V386V exonic Cyp1a1 synonymous SNV uc009pvn.2:c.C1158A:p.V386V exonic ENSMUSG00000032315 synonymous SNV ENSMUST00000034865:c.C1158A:p.V386V 9qB NA NA chr9 57549982 CGTxCCC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 196 0 0 25.423197 0.160494 0.02 1.083329 68 13 1915 347 60 60 0 0 CC 25.2589 84 0 2361 0 KEEP + Cyp1a1 YES B[a]P_1 chr9 58104955 58104955 C G exonic Stoml1 nonsynonymous SNV NM_026942:c.C518G:p.A173G exonic Stoml1 nonsynonymous SNV uc009pwu.1:c.C257G:p.A86G exonic ENSMUSG00000032333 nonsynonymous SNV ENSMUST00000034883:c.C518G:p.A173G 9qB NA NA chr9 58104955 ACGxCAT C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.89919 0.899314 0.999863 76 0 0 17.639434 0.190476 0.02 -0.368315 34 8 959 227 60 60 0 0 CC 6.013572 20 0 546 0 KEEP + Stoml1 NO B[a]P_1 chr9 58108688 58108688 G C exonic Stoml1 nonsynonymous SNV NM_026942:c.G874C:p.A292P exonic Stoml1 nonsynonymous SNV uc009pwu.1:c.G613C:p.A205P exonic ENSMUSG00000032333 nonsynonymous SNV ENSMUST00000034883:c.G874C:p.A292P 9qB NA NA chr9 58108688 GTGxCTG G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 220 1 0 20.019697 0.090164 0.02 2.320691 111 11 3088 308 60 60 0 0 GG 21.308317 71 0 1866 0 KEEP + Stoml1 NO B[a]P_1 chr9 59796580 59796580 G C exonic Nr2e3 nonsynonymous SNV NM_013708:c.C380G:p.A127G exonic Nr2e3 nonsynonymous SNV uc009pyw.1:c.C155G:p.A52G exonic ENSMUSG00000032292 nonsynonymous SNV ENSMUST00000034831:c.C380G:p.A127G 9qB NA NA chr9 59796580 ATGxCAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992091 0.992094 0.999997 108 0 0 11.610728 0.096774 0.02 1.249871 56 6 1564 173 60 60 0 0 GG 9.022217 30 0 823 0 KEEP - Nr2e3 NO B[a]P_1 chr9 63502561 63502561 A G exonic Smad3 nonsynonymous SNV NM_016769:c.T941C:p.F314S exonic Smad3 nonsynonymous SNV uc009qbi.1:c.T941C:p.F314S exonic ENSMUSG00000032402 nonsynonymous SNV ENSMUST00000034973:c.T941C:p.F314S 9qC NA NA chr9 63502561 ACGxAAA A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994976 0.995084 0.999892 102 0 0 36.343732 0.238806 0.02 1.107718 51 16 1419 447 60 60 0 0 AA 6.918207 23 0 642 0 KEEP - Smad3 NO B[a]P_1 chr9 64041582 64041582 C A exonic Map2k1 nonsynonymous SNV NM_008927:c.G620T:p.C207F exonic Map2k1 nonsynonymous SNV uc009qbp.1:c.G620T:p.C207F exonic ENSMUSG00000004936 nonsynonymous SNV ENSMUST00000005066:c.G620T:p.C207F 9qC NA NA chr9 64041582 TCAxAGA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490476 0.490544 0.99986 51 0 0 28.331384 0.478261 0.02 -0.201671 12 11 328 300 60 60 0 0 CC 5.71536 19 0 537 0 KEEP - Map2k1 YES B[a]P_1 chr9 64764859 64764859 G T exonic Dennd4a nonsynonymous SNV NM_001162917:c.G5567T:p.G1856V exonic Dennd4a nonsynonymous SNV uc009qck.2:c.G308T:p.G103V exonic ENSMUSG00000053641 nonsynonymous SNV ENSMUST00000038890:c.G5567T:p.G1856V 9qC NA NA chr9 64764859 CTGxAGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.999859 44 0 0 7.870405 0.190476 0.02 -0.18415 17 4 484 104 60 60 0 0 GG 5.415114 18 0 519 0 KEEP + Dennd4a YES B[a]P_1 chr9 64961234 64961234 T C exonic Igdcc4 nonsynonymous SNV NM_020043:c.T233C:p.L78P exonic "DDM36,Igdcc4" nonsynonymous SNV uc009qcs.1:c.T233C:p.L78P exonic ENSMUSG00000032816 nonsynonymous SNV ENSMUST00000035499:c.T233C:p.L78P 9qC NA NA chr9 64961234 TACxAGA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926556 0.92664 0.999909 74 0 0 18.026024 0.205128 0.02 -0.394581 31 8 852 228 60 60 0 0 TT 7.218776 24 0 667 0 KEEP + Igdcc4 NO B[a]P_1 chr9 64961235 64961235 A C exonic Igdcc4 synonymous SNV NM_020043:c.A234C:p.L78L exonic "DDM36,Igdcc4" synonymous SNV uc009qcs.1:c.A234C:p.L78L exonic ENSMUSG00000032816 synonymous SNV ENSMUST00000035499:c.A234C:p.L78L 9qC NA NA chr9 64961235 ACTxGAG A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934452 0.934492 0.999957 78 0 0 20.735161 0.225 0.02 -0.403342 31 9 862 257 60 60 0 0 AA 7.819491 26 0 709 0 KEEP + Igdcc4 NO B[a]P_1 chr9 64961236 64961236 G A exonic Igdcc4 nonsynonymous SNV NM_020043:c.G235A:p.E79K exonic "DDM36,Igdcc4" nonsynonymous SNV uc009qcs.1:c.G235A:p.E79K exonic ENSMUSG00000032816 nonsynonymous SNV ENSMUST00000035499:c.G235A:p.E79K 9qC NA NA chr9 64961236 CTAxAGC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934428 0.934492 0.999931 77 0 0 20.135163 0.225 0.02 -0.403374 31 9 873 251 60 60 0 0 GG 7.521083 25 0 724 0 KEEP + Igdcc4 NO B[a]P_1 chr9 65062670 65062670 G A UTR5 Parp16 NA NA UTR5 Parp16 NA NA exonic ENSMUSG00000032392 nonsynonymous SNV ENSMUST00000093828:c.G88A:p.A30T 9qC NA NA chr9 65062670 CAAxGTG G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 123 1 0 18.779985 0.160714 0.02 1.204216 47 9 1309 252 60 60 0 0 GG 16.844843 56 0 1574 0 KEEP + Parp16 NO B[a]P_1 chr9 67215031 67215031 C A exonic Tln2 nonsynonymous SNV NM_001081242:c.G1121T:p.G374V exonic Tln2 nonsynonymous SNV uc012gvz.1:c.G1121T:p.G374V exonic ENSMUSG00000052698 nonsynonymous SNV ENSMUST00000039509:c.G1121T:p.G374V 9qC NA NA chr9 67215031 TCCxCAA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800133 0.800245 0.99986 62 0 0 26.254973 0.323529 0.02 -0.306833 23 11 627 303 60 60 0 0 CC 3.951901 18 1 496 13 KEEP - Tln2 YES B[a]P_1 chr9 67819838 67819838 T C exonic Vps13c nonsynonymous SNV NM_177184:c.T10253C:p.L3418P exonic Vps13c nonsynonymous SNV uc009qmu.1:c.T32C:p.L11P exonic ENSMUSG00000035284 nonsynonymous SNV ENSMUST00000057972:c.T10136C:p.L3379P 9qC NA NA chr9 67819838 TGCxTGG T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 99 0 0 17.640112 0.190476 0.02 -0.36827 34 8 940 227 60 60 0 0 TT 12.286286 41 0 1108 0 KEEP + Vps13c NO B[a]P_1 chr9 72759788 72759788 C A exonic Prtg synonymous SNV NM_175485:c.C3255A:p.P1085P exonic Prtg synonymous SNV uc009qqh.1:c.C3255A:p.P1085P exonic ENSMUSG00000036030 synonymous SNV ENSMUST00000055535:c.C3255A:p.P1085P 9qD NA NA chr9 72759788 CCCxGGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 181 0 0 61.720144 0.288889 0.02 1.004781 64 26 1588 728 60 60 0 0 CC 21.573945 72 0 1699 0 KEEP + Prtg YES B[a]P_1 chr9 77827702 77827702 C T exonic Elovl5 synonymous SNV NM_134255:c.C567T:p.I189I exonic Elovl5 synonymous SNV uc009qtn.2:c.C567T:p.I189I exonic ENSMUSG00000032349 synonymous SNV ENSMUST00000034904:c.C567T:p.I189I 9qE1 NA NA chr9 77827702 CATxCCG C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 214 2 0 36.668601 0.166667 0.02 2.345457 90 18 2582 492 60 60 0 0 CC 22.860836 76 0 2140 0 KEEP + Elovl5 NO B[a]P_1 chr9 78052132 78052132 A C exonic Gsta4 nonsynonymous SNV NM_010357:c.A233C:p.K78T exonic Gsta4 nonsynonymous SNV uc009qty.2:c.A233C:p.K78T exonic ENSMUSG00000032348 nonsynonymous SNV ENSMUST00000034903:c.A233C:p.K78T 9qE1 NA NA chr9 78052132 CCAxGTA A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 69 0 0 15.404402 0.25 0.02 -0.315559 27 9 761 199 60 60 0 0 AA 8.121577 27 0 757 0 KEEP + Gsta4 NO B[a]P_1 chr9 85220190 85220190 G T exonic Fam46a synonymous SNV NM_001160378:c.C243A:p.G81G exonic Fam46a synonymous SNV uc009qwt.2:c.C186A:p.G62G exonic ENSMUSG00000032265 synonymous SNV ENSMUST00000034802:c.C243A:p.G81G 9qE3.1 NA NA chr9 85220190 AATxCCG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 420 1 0 118.638046 0.245192 0.02 4.948565 157 51 4371 1446 60 60 0 0 GG 50.527969 171 1 4701 7 KEEP - Fam46a YES B[a]P_1 chr9 89623772 89623772 G T exonic Ankrd34c synonymous SNV NM_207260:c.C1353A:p.L451L exonic Ankrd34c synonymous SNV uc009qzp.1:c.C1353A:p.L451L exonic ENSMUSG00000047606 synonymous SNV ENSMUST00000060700:c.C1353A:p.L451L 9qE3.1 NA NA chr9 89623772 GTCxAGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 94 1 0 38.353499 0.340426 0.02 -0.411673 31 16 755 438 60 60 0 0 GG 11.121756 37 0 973 0 KEEP - Ankrd34c YES B[a]P_1 chr9 89895600 89895600 G T exonic Rasgrf1 nonsynonymous SNV NM_011245:c.G2636T:p.R879L exonic Rasgrf1 nonsynonymous SNV uc009qzt.1:c.G2636T:p.R879L exonic ENSMUSG00000032356 nonsynonymous SNV ENSMUST00000034912:c.G2636T:p.R879L 9qE3.1 NA NA chr9 89895600 GTCxTGA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 188 0 0 25.568382 0.132653 0.02 0.837082 85 13 1930 360 60 60 0 0 GG 22.218277 74 0 1720 0 KEEP + Rasgrf1 YES B[a]P_1 chr9 91256591 91256591 G T exonic Zic1 nonsynonymous SNV NM_009573:c.C1160A:p.S387Y exonic Zic1 nonsynonymous SNV uc009rag.1:c.C1160A:p.S387Y exonic ENSMUSG00000032368 nonsynonymous SNV ENSMUST00000034927:c.C1160A:p.S387Y 9qE3.3 NA NA chr9 91256591 GAAxAGG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 144 0 0 13.875467 0.106667 0.02 0.939663 67 8 1895 211 60 60 0 0 GG 15.942524 53 0 1499 0 KEEP - Zic1 YES B[a]P_1 chr9 92367846 92367846 G C exonic Plscr4 synonymous SNV NM_178711:c.G114C:p.A38A exonic Plscr4 synonymous SNV uc009rar.1:c.G114C:p.A38A exonic ENSMUSG00000032377 synonymous SNV ENSMUST00000034941:c.G114C:p.A38A 9qE3.3 NA NA chr9 92367846 TGCxCCA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 166 0 0 18.041632 0.128571 0.02 1.081577 61 9 1613 254 60 60 0 0 GG 25.257861 84 0 2239 0 KEEP + Plscr4 NO B[a]P_1 chr9 95129320 95129320 C A exonic Slc9a9 nonsynonymous SNV NM_177909:c.C1771A:p.Q591K exonic Slc9a9 nonsynonymous SNV uc009ray.2:c.C1771A:p.Q591K exonic ENSMUSG00000031129 nonsynonymous SNV ENSMUST00000033463:c.C1771A:p.Q591K 9qE3.3 NA NA chr9 95129320 TACxAGG C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 601 6 0 151.423222 0.27897 0.02 4.82748 168 65 4702 1803 60 60 0 0 CC 79.694927 265 0 7519 0 KEEP + Slc9a9 YES B[a]P_1 chr9 97442259 97442259 C A exonic Clstn2 nonsynonymous SNV NM_022319:c.G871T:p.D291Y exonic Clstn2 nonsynonymous SNV uc009rdd.1:c.G871T:p.D291Y exonic ENSMUSG00000032452 nonsynonymous SNV ENSMUST00000035027:c.G871T:p.D291Y 9qE3.3 NA NA chr9 97442259 CATxGCA C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999998 75 0 0 8.166632 0.117647 0.02 -0.297797 30 4 727 116 60 60 0 0 CC 9.917021 33 0 851 0 KEEP - Clstn2 YES B[a]P_1 chr9 98399160 98399160 C G exonic Rbp2 nonsynonymous SNV NM_009034:c.C99G:p.I33M exonic Rbp2 nonsynonymous SNV uc009rdk.2:c.C99G:p.I33M exonic ENSMUSG00000032454 nonsynonymous SNV ENSMUST00000035029:c.C99G:p.I33M 9qE3.3 NA NA chr9 98399160 GATxGCA C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 192 0 0 33.158614 0.153846 0.02 2.478763 88 16 2391 449 60 60 0 0 CC 18.331176 61 0 1615 0 KEEP + Rbp2 NO B[a]P_1 chr9 99360116 99360116 C G exonic Nme9 nonsynonymous SNV NM_001165957:c.C33G:p.D11E exonic Txndc6 nonsynonymous SNV uc012gza.1:c.C33G:p.D11E exonic ENSMUSG00000046242 nonsynonymous SNV ENSMUST00000163199:c.C33G:p.D11E 9qE3.3 NA NA chr9 99360116 GGAxGTC C G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 267 0 0 57.076009 0.2 0.02 2.349613 104 26 2600 729 60 60 0 0 CC 26.153046 87 0 2251 0 KEEP + Nme9 NO B[a]P_1 chrX 122736640 122736640 G T intergenic "Vmn2r121(dist=1487121),4932411N23Rik(dist=610354)" NA NA intergenic "Vmn2r121(dist=1487121),4932411N23Rik(dist=610354)" NA NA ncRNA_exonic ENSMUSG00000083294 NA NA XqE3 "Score=0.968789;Name=No.113963,chrX:120455730" NA chrX 122736640 TTGxCAT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.99986 58 0 7 30.327829 0.461538 0.02 -0.22798 14 12 394 324 36 36 0 0 GG 6.918269 23 0 643 0 KEEP NA Vmn2r121 YES B[a]P_1 chrX 136316675 136316675 A C intronic Ripply1 NA NA intronic Ripply1 NA NA intronic ENSMUSG00000072945 NA NA XqF1 NA NA chrX 136316675 CTAxGTT A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.581666 0.58293 0.997832 51 0 0 20.40795 0.346154 0.02 -0.227944 17 9 471 234 60 60 0 0 AA 4.792699 16 0 431 0 KEEP - Ripply1 NO B[a]P_1 chrX 149233072 149233072 G T exonic Gpr143 nonsynonymous SNV NM_010951:c.G1037T:p.R346L exonic Gpr143 nonsynonymous SNV uc009uqo.1:c.G1037T:p.R346L exonic ENSMUSG00000025333 nonsynonymous SNV ENSMUST00000026383:c.G1037T:p.R346L XqF3 NA NA chrX 149233072 TGCxTTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 93 0 0 25.467642 0.261905 0.02 -0.367949 31 11 747 307 60 60 0 0 GG 11.420318 38 0 966 0 KEEP + Gpr143 YES B[a]P_1 chrX 149344294 149344294 C T intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA ncRNA_intronic ENSMUSG00000083440 NA NA XqF3 NA NA chrX 149344294 CTGxTGT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 248 1 94 46.137514 0.372549 0.02 1.150128 32 19 907 517 60 46 0 0 CC 42.399266 141 0 3913 0 KEEP NA Gpr143 NO B[a]P_1 chrX 153616621 153616621 G A intronic Phex NA NA intronic Phex NA NA intronic ENSMUSG00000057457 NA NA XqF4 NA NA chrX 153616621 CCAxTAA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 122 2 0 56.090498 0.583333 0.02 -0.315662 15 21 425 567 60 60 0 0 GG 20.455174 68 0 1927 0 KEEP - Phex NO B[a]P_1 chrX 163744615 163744615 G T exonic Tlr7 synonymous SNV NM_133211:c.C1806A:p.L602L exonic Tlr7 synonymous SNV uc009uwz.1:c.C1806A:p.L602L exonic ENSMUSG00000044583 synonymous SNV ENSMUST00000060719:c.C1806A:p.L602L XqF5 NA NA chrX 163744615 CATxAGT G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 77 0 0 29.037059 0.387097 0.02 -0.289371 19 12 540 323 60 60 0 0 GG 11.423908 38 0 1061 0 KEEP - Tlr7 YES B[a]P_1 chrX 166414822 166414822 T C ncRNA_intronic G530011O06Rik NA NA ncRNA_intronic "Fxy,G530011O06Rik" NA NA ncRNA_intronic ENSMUSG00000072844 NA NA XqF5 NA NA chrX 166414822 AAAxTCA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 118 1 0 13.189207 0.145833 0.02 -0.438363 41 7 1091 185 70 70 0 0 TT 17.743169 59 0 1588 0 KEEP - G530011O06Rik NO B[a]P_1 chrX 34687815 34687815 G A exonic Nkap nonsynonymous SNV NM_025937:c.G1103A:p.R368Q exonic Nkap nonsynonymous SNV uc009syg.2:c.G1103A:p.R368Q exonic ENSMUSG00000016409 nonsynonymous SNV ENSMUST00000016553:c.G1103A:p.R368Q XqA3.3 NA NA chrX 34687815 TTCxGAA G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 104 0 0 17.337907 0.195122 0.02 -0.35908 33 8 822 223 60 60 0 0 GG 13.822194 46 0 1155 0 KEEP + Nkap NO B[a]P_1 chrX 35231199 35231199 C A exonic Rhox8 nonsynonymous SNV NM_001004193:c.G697T:p.G233C exonic Rhox8 nonsynonymous SNV uc009szi.1:c.G697T:p.G233C exonic ENSMUSG00000064137 nonsynonymous SNV ENSMUST00000071885:c.G697T:p.G233C XqA3.3 NA NA chrX 35231199 CGCxATT C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 112 2 0 62.207975 0.547619 0.02 -0.368272 19 23 530 638 60 60 0 0 CC 17.375578 58 0 1609 0 KEEP - Rhox8 YES B[a]P_1 chrX 38646604 38646604 A G intergenic "Cypt14(dist=1429823),Gria3(dist=107874)" NA NA intergenic "Cypt14(dist=1429823),Gria3(dist=107427)" NA NA downstream ENSMUSG00000081880 NA NA XqA3.3 "Score=0.937075;Name=No.105006,chr8:78235369" NA chrX 38646604 TCAxAAG A G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 136 0 8 15.572935 0.179487 0.02 1.328778 32 7 869 202 60 37 0 0 AA 15.305636 51 0 1400 0 KEEP NA Cypt14 NO B[a]P_1 chrX 51079197 51079197 C A exonic Zfp36l3 nonsynonymous SNV NM_001009549:c.G226T:p.V76L exonic Zfp36l3 nonsynonymous SNV uc009tfk.1:c.G226T:p.V76L exonic ENSMUSG00000059334 nonsynonymous SNV ENSMUST00000071711:c.G226T:p.V76L XqA5 NA NA chrX 51079197 ACAxCGC C A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 140 0 0 75.898457 0.447761 0.02 1.009915 37 30 1003 816 60 60 0 0 CC 17.13721 57 0 1546 0 KEEP - Zfp36l3 YES B[a]P_1 chrX 54642000 54642000 G C exonic Rbmx nonsynonymous SNV NM_001166623:c.C578G:p.P193R exonic "Gm7324,Rbmx" nonsynonymous SNV uc009thh.2:c.C578G:p.P193R exonic ENSMUSG00000031134 nonsynonymous SNV ENSMUST00000033470:c.C578G:p.P193R XqA5 NA NA chrX 54642000 GGCxGGC G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 0.999999 77 2 0 34.841556 0.535714 0.02 -0.24537 13 15 351 361 60 60 0 0 GG 10.825244 36 0 971 0 KEEP - Rbmx NO B[a]P_1 chrX 57299247 57299247 G A intergenic "F9(dist=15312),Mcf2(dist=9886)" NA NA intergenic "F9(dist=15312),Mcf2(dist=9886)" NA NA ncRNA_exonic ENSMUSG00000046993 NA NA XqA6 "Score=0.900291;Name=No.61218,chr15:40368742" NA chrX 57299247 CCTxCCC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 232 15 1 10.12788 0.077922 0.02 2.275448 71 6 1990 164 60 60 0 0 GG 27.648907 92 0 2541 0 KEEP NA F9 NO B[a]P_1 chrX 57299259 57299259 C T intergenic "F9(dist=15324),Mcf2(dist=9874)" NA NA intergenic "F9(dist=15324),Mcf2(dist=9874)" NA NA ncRNA_exonic ENSMUSG00000046993 NA NA XqA6 "Score=0.900291;Name=No.61218,chr15:40368742" NA chrX 57299259 GCTxCTT C T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 226 11 2 10.422677 0.075 0.02 2.25801 74 6 2086 168 60 60 0 0 CC 26.771903 89 0 2523 0 KEEP NA F9 NO B[a]P_1 chrX 67720458 67720458 T C exonic BC023829 synonymous SNV NM_001033328:c.A294G:p.E98E exonic BC023829 synonymous SNV uc009tji.1:c.A294G:p.E98E exonic ENSMUSG00000073139 synonymous SNV ENSMUST00000101506:c.A294G:p.E98E XqA7.2 NA NA chrX 67720458 AACxTCA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 99 2 0 8.4958 0.173913 0.02 -0.201697 19 4 538 112 60 60 0 0 TT 15.337276 51 0 1416 0 KEEP - BC023829 NO B[a]P_1 chrX 70773992 70773992 G C exonic Atp2b3 nonsynonymous SNV NM_177236:c.G217C:p.D73H exonic Atp2b3 nonsynonymous SNV uc009tma.1:c.G217C:p.D73H exonic ENSMUSG00000031376 nonsynonymous SNV ENSMUST00000114480:c.G217C:p.D73H XqA7.3 NA NA chrX 70773992 GCAxACA G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 31 0 0 15.347745 0.5 0.02 -0.105228 6 6 175 161 60 60 0 0 GG 4.51237 15 0 428 0 KEEP + Atp2b3 NO B[a]P_1 chrX 70775638 70775638 A C exonic Atp2b3 nonsynonymous SNV NM_177236:c.A793C:p.T265P exonic Atp2b3 nonsynonymous SNV uc009tma.1:c.A793C:p.T265P exonic ENSMUSG00000031376 nonsynonymous SNV ENSMUST00000114480:c.A793C:p.T265P XqA7.3 NA NA chrX 70775638 GGAxCTC A C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 83 0 0 36.637712 0.416667 0.02 -0.31555 21 15 559 401 60 60 0 0 AA 10.226489 34 0 941 0 KEEP + Atp2b3 NO B[a]P_1 chrX 71069612 71069612 G A intronic Pdzd4 NA NA intronic Pdzd4 NA NA intronic ENSMUSG00000002006 NA NA XqA7.3 NA NA chrX 71069612 CAGxCGC G A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999998 90 0 0 14.473226 0.159091 0.02 -0.385772 37 7 1026 195 60 60 0 0 GG 10.227312 34 0 956 0 KEEP - Pdzd4 NO B[a]P_1 chrX 7377327 7377327 G T exonic Gripap1 nonsynonymous SNV NM_207670:c.G490T:p.V164F exonic Gripap1 nonsynonymous SNV uc009smp.1:c.G52T:p.V18F exonic ENSMUSG00000031153 nonsynonymous SNV ENSMUST00000101694:c.G355T:p.V119F XqA1.1 NA NA chrX 7377327 GCTxTTG G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 168 1 0 13.272673 0.12069 0.02 1.088795 51 7 1389 192 60 60 0 0 GG 23.75129 79 0 2193 0 KEEP + Gripap1 YES B[a]P_1 chrX 7856963 7856963 G C exonic Slc38a5 nonsynonymous SNV NM_172479:c.G1424C:p.R475P exonic Slc38a5 nonsynonymous SNV uc009sot.1:c.G1400C:p.R467P exonic ENSMUSG00000031170 nonsynonymous SNV ENSMUST00000115590:c.G1400C:p.R467P XqA1.1 NA NA chrX 7856963 GCCxTAT G C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 109 0 0 42.355925 0.377778 0.02 -0.403258 28 17 719 472 60 60 0 0 GG 13.528308 45 0 1177 0 KEEP + Slc38a5 NO B[a]P_1 chrX 78665994 78665994 G T exonic 4930595M18Rik nonsynonymous SNV NM_173435:c.C1445A:p.P482H exonic 4930595M18Rik nonsynonymous SNV uc009trf.1:c.C1445A:p.P482H exonic ENSMUSG00000060673 nonsynonymous SNV ENSMUST00000080083:c.C1445A:p.P482H XqB NA NA chrX 78665994 TGAxGTC G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 70 0 0 25.825122 0.333333 0.02 -0.289377 22 11 625 297 60 60 0 0 GG 8.72317 29 0 816 0 KEEP - 4930595M18Rik YES B[a]P_1 chrX 88880477 88880477 T G exonic Gm14781 nonsynonymous SNV NM_001205268:c.T695G:p.M232R intergenic "AK006997(dist=59227),Mageb5(dist=144470)" NA NA exonic ENSMUSG00000064129 nonsynonymous SNV ENSMUST00000078469:c.T695G:p.M232R XqC2 "Score=0.99264;Name=No.113659,chrX:89002300" NA chrX 88880477 TTAxGAA T G Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 178 0 0 23.136023 0.157143 0.02 1.081441 59 11 1608 311 60 60 0 0 TT 26.16315 87 0 2336 0 KEEP NA Gm14781 NO B[a]P_1 chrX 93769084 93769084 G T exonic Heph nonsynonymous SNV NM_001159627:c.G3419T:p.R1140L exonic Heph nonsynonymous SNV uc009tuk.2:c.G3419T:p.R1140L exonic ENSMUSG00000031209 nonsynonymous SNV ENSMUST00000033553:c.G3419T:p.R1140L XqC3 NA NA chrX 93769084 GGCxCAA G T Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 104 0 0 62.347085 0.611111 0.02 -0.315639 14 22 364 623 60 60 0 0 GG 14.728967 49 0 1269 0 KEEP + Heph YES B[a]P_1 chrX 98462413 98462413 T A exonic Il2rg nonsynonymous SNV NM_013563:c.A501T:p.E167D exonic Il2rg nonsynonymous SNV uc009txc.1:c.A501T:p.E167D exonic "ENSMUSG00000031304,ENSMUSG00000092463" nonsynonymous SNV ENSMUST00000135038:c.A171T:p.E57D XqD NA NA chrX 98462413 GGAxTCA T A Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 185 0 0 7.445079 0.083333 0.02 1.062667 55 5 1478 125 60 60 0 0 TT 32.784333 109 0 3017 0 KEEP - Il2rg NO B[a]P_1 chrX 99443349 99443349 T C splicing "Cited1(NM_007709:exon4:c.61-2A>G,NM_001276466:exon4:c.61-2A>G,NM_001276474:exon4:c.145-2A>G,NM_001276473:exon4:c.61-2A>G)" NA NA splicing "Cited1(uc009tyn.1:exon4:c.61-2A>G,uc009tyo.1:exon4:c.61-2A>G)" NA NA splicing "ENSMUSG00000051159(ENSMUST00000050551:exon4:c.61-2A>G,ENSMUST00000101336:exon4:c.61-2A>G,ENSMUST00000134887:exon4:c.61-2A>G,ENSMUST00000130589:exon4:c.145-2A>G,ENSMUST00000136277:exon4:c.61-2A>G)" NA NA XqD NA NA chrX 99443349 TCCxAGA T C Ot9358_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index20_GTGGCC_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 73 0 0 24.206658 0.322581 0.02 -0.271807 21 10 564 279 60 60 0 0 TT 9.022632 30 0 822 0 KEEP - Cited1 NO B[a]P_2 chr10 108136503 108136503 G C exonic Gm5136 nonsynonymous SNV NM_203660:c.C646G:p.Q216E exonic Gm5136 nonsynonymous SNV uc007gzj.2:c.C646G:p.Q216E intronic ENSMUSG00000035864 NA NA 10qD1 NA NA chr10 108136503 CCTxACA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 88 0 0 82.739839 0.617021 0.02 -0.412151 18 29 520 825 60 60 0 0 GG 11.130022 37 0 1051 0 KEEP - Gm5136 NO B[a]P_2 chr10 109155276 109155276 G T exonic Nav3 synonymous SNV NM_001081035:c.C5280A:p.S1760S exonic Nav3 synonymous SNV uc007gzk.1:c.C3039A:p.S1013S exonic ENSMUSG00000020181 synonymous SNV ENSMUST00000161582:c.C3090A:p.S1030S 10qD1 NA NA chr10 109155276 CATxGAT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 70 0 0 74.379329 0.757576 0.02 -0.289399 8 25 237 704 60 60 0 0 GG 9.926364 33 0 944 0 KEEP - Nav3 YES B[a]P_2 chr10 114864757 114864757 G T exonic Zfc3h1 nonsynonymous SNV NM_001033261:c.G5446T:p.V1816L exonic Zfc3h1 nonsynonymous SNV uc007hbh.1:c.G112T:p.V38L exonic ENSMUSG00000034163 nonsynonymous SNV ENSMUST00000036044:c.G5446T:p.V1816L 10qD2 NA NA chr10 114864757 CTAxTAA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 88 1 0 33.701866 0.464286 0.02 -0.245526 15 13 421 359 60 60 0 0 GG 14.137585 47 0 1324 0 KEEP + Zfc3h1 YES B[a]P_2 chr10 116498435 116498435 T C exonic Cct2 nonsynonymous SNV NM_007636:c.A365G:p.H122R exonic Cct2 nonsynonymous SNV uc007hcs.1:c.A365G:p.H122R exonic ENSMUSG00000034024 nonsynonymous SNV ENSMUST00000047672:c.A365G:p.H122R 10qD2 NA NA chr10 116498435 GGAxGTA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 200 2 0 20.698335 0.20339 0.02 0.983015 47 12 1264 279 60 60 0 0 TT 31.252615 104 0 2783 0 KEEP - Cct2 NO B[a]P_2 chr10 12368953 12368953 T A exonic Utrn nonsynonymous SNV NM_011682:c.A6583T:p.M2195L exonic Utrn nonsynonymous SNV uc007ejw.1:c.A6583T:p.M2195L exonic ENSMUSG00000019820 nonsynonymous SNV ENSMUST00000076817:c.A6583T:p.M2195L 10qA1 NA NA chr10 12368953 TCAxCTG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 100 0 0 19.73526 0.225 0.02 -0.350759 31 9 868 247 60 60 0 0 TT 13.532633 45 0 1224 0 KEEP - Utrn NO B[a]P_2 chr10 124665136 124665136 C A exonic Slc16a7 stopgain SNV NM_011391:c.G1387T:p.E463X exonic Slc16a7 stopgain SNV uc007hgx.1:c.G1387T:p.E463X exonic ENSMUSG00000020102 stopgain SNV ENSMUST00000063318:c.G1387T:p.E463X 10qD3 NA NA chr10 124665136 CTTxGTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999998 65 3 0 39.570563 0.7 0.02 -0.175343 6 14 154 382 60 60 0 0 CC 10.214797 34 0 889 0 KEEP - Slc16a7 YES B[a]P_2 chr10 124665137 124665137 G A exonic Slc16a7 synonymous SNV NM_011391:c.C1386T:p.D462D exonic Slc16a7 synonymous SNV uc007hgx.1:c.C1386T:p.D462D exonic ENSMUSG00000020102 synonymous SNV ENSMUST00000063318:c.C1386T:p.D462D 10qD3 NA NA chr10 124665137 TTCxTCC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999999 64 3 0 40.819445 0.736842 0.02 -0.166603 5 14 135 389 60 60 0 0 GG 10.51157 35 0 860 0 KEEP - Slc16a7 NO B[a]P_2 chr10 127000744 127000744 C A exonic Lrp1 nonsynonymous SNV NM_008512:c.G6950T:p.R2317L exonic Lrp1 nonsynonymous SNV uc007hjx.1:c.G6950T:p.R2317L exonic ENSMUSG00000040249 nonsynonymous SNV ENSMUST00000049149:c.G6950T:p.R2317L 10qD3 NA NA chr10 127000744 GGGxGAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 119 0 0 70.047931 0.520833 0.02 1.393399 23 25 578 725 60 60 0 0 CC 15.58422 52 0 1262 0 KEEP - Lrp1 YES B[a]P_2 chr10 128874410 128874410 C A exonic Olfr786 nonsynonymous SNV NM_146549:c.C541A:p.P181T exonic Olfr786 nonsynonymous SNV uc007hpx.1:c.C541A:p.P181T exonic ENSMUSG00000064245 nonsynonymous SNV ENSMUST00000076508:c.C541A:p.P181T 10qD3 NA NA chr10 128874410 TTCxCTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 161 0 0 100.358495 0.534247 0.02 1.055436 34 39 966 1037 60 60 0 0 CC 23.462119 78 0 2188 0 KEEP + Olfr786 YES B[a]P_2 chr10 17563299 17563299 C G UTR3 Txlnb NA NA UTR3 Txlnb NA NA UTR3 ENSMUSG00000039891 NA NA 10qA2 NA NA chr10 17563299 ATTxTTC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 70 0 0 61.597128 0.777778 0.02 -0.245527 6 21 173 578 60 60 0 0 CC 10.228363 34 0 978 0 KEEP + Txlnb NO B[a]P_2 chr10 19986650 19986650 C G exonic Map7 nonsynonymous SNV NM_001198635:c.C1009G:p.R337G exonic Mtap7 nonsynonymous SNV uc007eno.2:c.C985G:p.R329G exonic ENSMUSG00000019996 nonsynonymous SNV ENSMUST00000020173:c.C985G:p.R329G 10qA3 NA NA chr10 19986650 GCCxGCC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 75 0 0 61.140337 0.638889 0.02 -0.315462 13 23 330 604 60 60 0 0 CC 10.809599 36 0 857 0 KEEP + Map7 NO B[a]P_2 chr10 26884681 26884681 C G intronic Lama2 NA NA intronic Lama2 NA NA intronic ENSMUSG00000019899 NA NA 10qA4 NA NA chr10 26884681 ATGxACA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 81 0 0 57.584352 0.645161 0.02 -0.271796 11 20 300 568 60 60 0 0 CC 11.399363 38 0 1035 0 KEEP - Lama2 NO B[a]P_2 chr10 26884683 26884683 C A intronic Lama2 NA NA intronic Lama2 NA NA intronic ENSMUSG00000019899 NA NA 10qA4 NA NA chr10 26884683 GCAxATC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 85 0 0 63.169506 0.666667 0.02 -0.289357 11 22 294 618 60 60 0 0 CC 12.031407 40 0 1118 0 KEEP - Lama2 YES B[a]P_2 chr10 3496683 3496683 G C intronic Oprm1 NA NA ncRNA_exonic MOR NA NA UTR3 ENSMUSG00000000766 NA NA 10qA1 NA NA chr10 3496683 GATxGCG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 72 0 0 18.955015 0.321429 0.02 -0.245477 19 9 546 223 60 60 0 0 GG 9.279005 31 0 851 0 KEEP - Oprm1 NO B[a]P_2 chr10 38829769 38829769 G T exonic Lama4 nonsynonymous SNV NM_010681:c.G5381T:p.R1794L exonic Lama4 nonsynonymous SNV uc007evq.2:c.G5381T:p.R1794L exonic ENSMUSG00000019846 nonsynonymous SNV ENSMUST00000019992:c.G5381T:p.R1794L 10qB1 NA NA chr10 38829769 GCCxCCC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 76 0 0 40.716239 0.608696 0.02 -0.201369 9 14 229 407 60 60 0 0 GG 13.224193 44 0 1127 0 KEEP + Lama4 YES B[a]P_2 chr10 57514524 57514524 G T exonic Smpdl3a nonsynonymous SNV NM_020561:c.G37T:p.V13F exonic Smpdl3a nonsynonymous SNV uc007fcu.1:c.G37T:p.V13F exonic ENSMUSG00000019872 nonsynonymous SNV ENSMUST00000020022:c.G37T:p.V13F 10qB4 NA NA chr10 57514524 CTGxTTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.996233 0.996233 1 161 2 0 64.850456 0.376812 0.02 1.090156 43 26 1213 723 60 60 0 0 GG 19.54865 65 0 1791 0 KEEP + Smpdl3a YES B[a]P_2 chr10 59334308 59334308 C T intergenic "Micu1(dist=7438),Dnajb12(dist=8031)" NA NA intergenic "Cbara1(dist=7438),Dnajb12(dist=8031)" NA NA intergenic "ENSMUSG00000020111(dist=7428),ENSMUSG00000020109(dist=7996)" NA NA 10qB4 NA NA chr10 59334308 TGAxGTT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 241 2 5 23.192487 0.166667 0.02 1.048623 60 12 1420 315 60 37 0 0 CC 41.710369 139 0 3365 0 KEEP NA Micu1 NO B[a]P_2 chr10 59334313 59334313 A G intergenic "Micu1(dist=7443),Dnajb12(dist=8026)" NA NA intergenic "Cbara1(dist=7443),Dnajb12(dist=8026)" NA NA intergenic "ENSMUSG00000020111(dist=7433),ENSMUSG00000020109(dist=7991)" NA NA 10qB4 NA NA chr10 59334313 TTCxGAT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 233 2 0 22.731027 0.169014 0.02 1.153457 59 12 1676 310 60 37 0 0 AA 41.507613 138 0 3830 0 KEEP NA Micu1 NO B[a]P_2 chr10 59357091 59357091 G C intronic Dnajb12 NA NA ncRNA_exonic AK046160 NA NA intronic ENSMUSG00000020109 NA NA 10qB4 NA NA chr10 59357091 CGTxAGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 142 0 0 89.748239 0.607843 0.02 1.444924 20 31 577 898 60 60 0 0 GG 22.860643 76 0 2148 0 KEEP + Dnajb12 NO B[a]P_2 chr10 67559694 67559694 C G exonic Arid5b nonsynonymous SNV NM_023598:c.G3125C:p.G1042A exonic Arid5b nonsynonymous SNV uc007fmf.1:c.G2396C:p.G799A exonic ENSMUSG00000019947 nonsynonymous SNV ENSMUST00000165054:c.G2396C:p.G799A 10qB5.1 NA NA chr10 67559694 TTCxCAG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 202 0 0 14.433183 0.097087 0.02 2.463547 93 10 2587 238 70 70 0 0 CC 21.028741 70 0 1911 0 KEEP - Arid5b NO B[a]P_2 chr10 69745446 69745446 G C exonic Slc16a9 nonsynonymous SNV NM_025807:c.G846C:p.K282N exonic Slc16a9 nonsynonymous SNV uc007fnr.1:c.G567C:p.K189N exonic ENSMUSG00000037762 nonsynonymous SNV ENSMUST00000046807:c.G846C:p.K282N 10qB5.3 NA NA chr10 69745446 CAAxAGG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918159 0.918171 0.999988 79 0 0 41.76066 0.386364 0.02 -0.38583 27 17 768 464 60 60 0 0 GG 8.122723 27 0 780 0 KEEP + Slc16a9 NO B[a]P_2 chr10 72118933 72118933 C G intronic Zwint NA NA intronic Zwint NA NA intronic ENSMUSG00000019923 NA NA 10qB5.3 NA NA chr10 72118933 GGTxTCT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.689252 0.693668 0.993634 47 0 0 32.985683 0.433333 0.02 -0.263029 17 13 471 357 60 60 0 0 CC 3.610076 12 0 346 0 KEEP + Zwint NO B[a]P_2 chr10 7587466 7587466 C A exonic Zc3h12d nonsynonymous SNV NM_172785:c.C1201A:p.L401I exonic Zc3h12d nonsynonymous SNV uc007eiq.2:c.C1201A:p.L401I exonic ENSMUSG00000039981 nonsynonymous SNV ENSMUST00000039484:c.C1201A:p.L401I 10qA1 NA NA chr10 7587466 AGCxTCC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 115 0 0 120.398641 0.759259 0.02 1.221694 13 41 375 1138 60 60 0 0 CC 16.807961 56 0 1496 0 KEEP + Zc3h12d YES B[a]P_2 chr10 76074473 76074473 C G intronic Col6a2 NA NA intronic Col6a2 NA NA intronic ENSMUSG00000020241 NA NA 10qC1 NA NA chr10 76074473 GAAxTGA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 292 0 0 48.334378 0.164286 0.02 2.261424 117 23 3215 645 60 60 0 0 CC 33.083684 110 0 3046 0 KEEP - Col6a2 NO B[a]P_2 chr10 77519974 77519974 T A intronic Dnmt3l NA NA intronic Dnmt3l NA NA intronic ENSMUSG00000000730 NA NA 10qC1 NA NA chr10 77519974 CCCxGCC T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 132 0 0 46.101237 0.307692 0.02 1.12575 45 20 1293 540 60 60 0 0 TT 15.640545 52 0 1447 0 KEEP + Dnmt3l NO B[a]P_2 chr10 78052288 78052288 C A exonic Syde1 synonymous SNV NM_027875:c.G633T:p.G211G exonic Syde1 synonymous SNV uc007fyb.2:c.G633T:p.G211G exonic ENSMUSG00000032714 synonymous SNV ENSMUST00000040580:c.G633T:p.G211G 10qC1 NA NA chr10 78052288 AGTxCCC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 177 0 0 86.232809 0.391304 0.02 0.987225 56 36 1532 958 60 60 0 0 CC 18.940221 63 0 1728 0 KEEP - Syde1 YES B[a]P_2 chr10 78859089 78859089 C A exonic Vmn2r82 nonsynonymous SNV NM_001101572:c.C2176A:p.P726T exonic Vmn2r82 nonsynonymous SNV uc009vaa.1:c.C2176A:p.P726T exonic ENSMUSG00000091468 nonsynonymous SNV ENSMUST00000170596:c.C2176A:p.P726T 10qC1 NA NA chr10 78859089 TCTxCTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 721 0 0 299.820109 0.362606 0.02 8.674142 225 128 6391 3392 60 60 0 0 CC 86.901959 289 0 8117 0 KEEP + Vmn2r82 YES B[a]P_2 chr10 79876093 79876093 C A intronic Tcf3 NA NA intronic Tcf3 NA NA intronic ENSMUSG00000020167 NA NA 10qC1 NA NA chr10 79876093 AAGxCAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973898 0.973965 0.999931 85 0 0 45.753778 0.351852 0.02 1.22173 35 19 988 519 60 60 0 0 CC 7.519569 25 0 697 0 KEEP - Tcf3 YES B[a]P_2 chr10 79998140 79998140 G T exonic Atp8b3 nonsynonymous SNV NM_026094:c.C144A:p.N48K exonic Atp8b3 nonsynonymous SNV uc007gdo.1:c.C144A:p.N48K exonic ENSMUSG00000003341 nonsynonymous SNV ENSMUST00000020383:c.C144A:p.N48K 10qC1 NA NA chr10 79998140 GGCxTTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999997 85 1 0 74.176613 0.604651 0.02 -0.376951 17 26 423 743 60 60 0 0 GG 9.618077 32 0 817 0 KEEP - Atp8b3 YES B[a]P_2 chr10 80367159 80367159 C G intronic Lmnb2 NA NA intronic Lmnb2 NA NA intronic ENSMUSG00000062075 NA NA 10qC1 NA NA chr10 80367159 AGGxCGC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119538 0.120436 0.99254 20 0 0 20.006129 0.636364 0.02 -0.096466 4 7 115 198 60 60 0 0 CC 2.404599 8 0 212 0 KEEP - Lmnb2 NO B[a]P_2 chr10 80552933 80552933 C T intronic Creb3l3 NA NA intronic Creb3l3 NA NA intronic ENSMUSG00000035041 NA NA 10qC1 NA NA chr10 80552933 TGGxCAG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 186 0 0 141.438499 0.625 0.02 1.092114 30 50 862 1406 60 60 0 0 CC 22.554151 75 0 2091 0 KEEP - Creb3l3 NO B[a]P_2 chr10 80610727 80610727 G C exonic Zbtb7a synonymous SNV NM_010731:c.G1257C:p.L419L exonic Zbtb7a synonymous SNV uc007gfz.1:c.G1257C:p.L419L exonic ENSMUSG00000035011 synonymous SNV ENSMUST00000048128:c.G1257C:p.L419L 10qC1 NA NA chr10 80610727 GCTxAAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353898 0.353947 0.999863 40 0 0 15.220282 0.315789 0.02 -0.16648 13 6 363 175 60 60 0 0 GG 6.016643 20 0 575 0 KEEP + Zbtb7a NO B[a]P_2 chr10 80670656 80670656 G C ncRNA_exonic 2310050B05Rik NA NA ncRNA_exonic 2310050B05Rik NA NA ncRNA_exonic ENSMUSG00000085779 NA NA 10qC1 NA NA chr10 80670656 GCTxTGA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 162 0 0 20.719009 0.149254 0.02 1.206008 57 10 1609 282 60 60 0 0 GG 21.653565 72 0 1972 0 KEEP + 2310050B05Rik NO B[a]P_2 chr10 80785252 80785252 G C exonic Cactin nonsynonymous SNV NM_027381:c.G306C:p.W102C exonic 2510012J08Rik nonsynonymous SNV uc007ghf.2:c.G306C:p.W102C exonic ENSMUSG00000034889 nonsynonymous SNV ENSMUST00000050867:c.G306C:p.W102C 10qC1 NA NA chr10 80785252 ATGxCAC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 62 0 0 25.551047 0.47619 0.02 -0.183997 11 10 302 271 60 60 0 0 GG 9.308306 31 0 836 0 KEEP + Cactin NO B[a]P_2 chr10 81051545 81051545 T C intronic Tle2 NA NA intronic Tle2 NA NA intronic ENSMUSG00000034771 NA NA 10qC1 NA NA chr10 81051545 CTCxTGA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 53 0 0 26.857613 0.47619 0.02 -0.18417 11 10 322 284 60 60 0 0 TT 7.519713 25 0 697 0 KEEP + Tle2 NO B[a]P_2 chr10 84776382 84776382 A G intergenic "Cry1(dist=128583),Btbd11(dist=73177)" NA NA intergenic "AK165297(dist=47245),Btbd11(dist=73177)" NA NA exonic ENSMUSG00000050490 synonymous SNV ENSMUST00000079684:c.A69G:p.Q23Q 10qC1 NA NA chr10 84776382 TCAxGTG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 134 0 0 51.199627 0.425532 0.02 -0.420699 27 20 771 556 60 60 0 0 AA 22.55691 75 0 2091 0 KEEP NA Cry1 NO B[a]P_2 chr10 88233533 88233533 C T exonic Utp20 nonsynonymous SNV NM_175158:c.G4921A:p.G1641S exonic Utp20 nonsynonymous SNV uc007grx.2:c.G4921A:p.G1641S exonic ENSMUSG00000004356 nonsynonymous SNV ENSMUST00000004470:c.G4921A:p.G1641S 10qC1 NA NA chr10 88233533 CGCxGAT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 78 0 0 37.478903 0.466667 0.02 -0.271774 16 14 414 398 60 60 0 0 CC 11.05745 37 0 919 0 KEEP - Utp20 NO B[a]P_2 chr10 89112761 89112761 G T exonic Scyl2 synonymous SNV NM_198021:c.C1710A:p.V570V exonic Scyl2 synonymous SNV uc007gsl.1:c.C441A:p.V147V exonic ENSMUSG00000069539 synonymous SNV ENSMUST00000092227:c.C1710A:p.V570V 10qC2 NA NA chr10 89112761 CAGxACT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.2608 0.260965 0.999366 36 0 0 17.075099 0.4375 0.02 -0.140298 9 7 259 185 60 60 0 0 GG 5.113983 17 0 484 0 KEEP - Scyl2 YES B[a]P_2 chr10 97139682 97139682 C T exonic Epyc nonsynonymous SNV NM_007884:c.C763T:p.P255S exonic Epyc nonsynonymous SNV uc007gxc.1:c.C763T:p.P255S exonic ENSMUSG00000019936 nonsynonymous SNV ENSMUST00000105285:c.C763T:p.P255S 10qC3 NA NA chr10 97139682 CTAxCAC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 177 0 0 25.39029 0.20339 0.02 1.080014 47 12 1294 326 60 60 0 0 CC 27.671617 92 0 2555 0 KEEP + Epyc NO B[a]P_2 chr10 97139683 97139683 C A exonic Epyc nonsynonymous SNV NM_007884:c.C764A:p.P255Q exonic Epyc nonsynonymous SNV uc007gxc.1:c.C764A:p.P255Q exonic ENSMUSG00000019936 nonsynonymous SNV ENSMUST00000105285:c.C764A:p.P255Q 10qC3 NA NA chr10 97139683 TACxACT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 178 0 0 26.29054 0.20339 0.02 1.177934 47 12 1285 335 60 60 0 0 CC 27.958594 93 0 2603 0 KEEP + Epyc YES B[a]P_2 chr11 100437578 100437578 C T exonic Cnp nonsynonymous SNV NM_009923:c.C32T:p.T11I exonic Cnp nonsynonymous SNV uc007llo.2:c.C32T:p.T11I exonic ENSMUSG00000006782 nonsynonymous SNV ENSMUST00000103120:c.C32T:p.T11I 11qD NA NA chr11 100437578 ACAxATT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 84 0 0 25.019744 0.289474 0.02 -0.333204 27 11 747 297 60 60 0 0 CC 9.62489 32 0 888 0 KEEP + Cnp NO B[a]P_2 chr11 100607149 100607149 G A exonic Kcnh4 stopgain SNV NM_001081194:c.C2257T:p.R753X exonic Kcnh4 stopgain SNV uc007lmf.2:c.C2257T:p.R753X exonic ENSMUSG00000035355 stopgain SNV ENSMUST00000107361:c.C2257T:p.R753X 11qD NA NA chr11 100607149 GTCxTGC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 144 0 0 110.88433 0.512195 0.02 0.976882 40 42 936 1155 60 60 0 0 GG 14.717103 49 0 1168 0 KEEP - Kcnh4 NO B[a]P_2 chr11 101046608 101046608 C A intronic Cntnap1 NA NA intronic Cntnap1 NA NA intronic ENSMUSG00000017167 NA NA 11qD NA NA chr11 101046608 GTGxTGC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 135 0 0 103.854132 0.506329 0.02 1.102158 39 40 1093 1085 60 60 0 0 CC 12.634247 42 0 1192 0 KEEP + Cntnap1 YES B[a]P_2 chr11 101136125 101136125 C A intronic Wnk4 NA NA intronic Wnk4 NA NA intronic ENSMUSG00000035112 NA NA 11qD NA NA chr11 101136125 ATCxCTT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 519 4 0 49.647685 0.118182 0.02 4.853318 194 26 5450 719 60 60 0 0 CC 61.901671 206 0 5704 0 KEEP + Wnk4 YES B[a]P_2 chr11 102260721 102260721 G C exonic Rundc3a synonymous SNV NM_001252347:c.G573C:p.L191L exonic Rundc3a synonymous SNV uc007lrs.2:c.G90C:p.L30L exonic ENSMUSG00000006575 synonymous SNV ENSMUST00000006750:c.G573C:p.L191L 11qD NA NA chr11 102260721 TCTxGAT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 310 2 0 169.720221 0.554622 0.02 2.544001 53 66 1489 1738 60 60 0 0 GG 44.218972 147 0 4173 0 KEEP + Rundc3a NO B[a]P_2 chr11 102747807 102747807 G C exonic Fam187a nonsynonymous SNV NM_025766:c.G1122C:p.E374D exonic Fam187a nonsynonymous SNV uc007lsu.2:c.G1122C:p.E374D exonic ENSMUSG00000075510 nonsynonymous SNV ENSMUST00000100369:c.G1122C:p.E374D 11qE1 NA NA chr11 102747807 GGAxACT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 227 4 0 205.113057 0.635593 0.02 2.535448 43 75 1198 2030 60 60 0 0 GG 26.170604 87 0 2471 0 KEEP + Fam187a NO B[a]P_2 chr11 103195495 103195495 C G intronic Arhgap27 NA NA intronic Arhgap27 NA NA intronic ENSMUSG00000034255 NA NA 11qE1 NA NA chr11 103195495 AGAxTCT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 275 0 0 149.802768 0.42963 0.02 2.403367 77 58 2129 1622 60 60 0 0 CC 36.677716 122 0 3290 0 KEEP - Arhgap27 NO B[a]P_2 chr11 103361696 103361696 C G intergenic "Plekhm1(dist=87718),Gm884(dist=34195)" NA NA intergenic "DQ726408(dist=53216),Gm884(dist=34195)" NA NA exonic ENSMUSG00000078632 nonsynonymous SNV ENSMUST00000153273:c.G4216C:p.V1406L 11qE1 NA NA chr11 103361696 CCAxAGG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 170 2 0 100.64317 0.395833 0.02 0.951687 58 38 1605 1105 60 60 0 0 CC 19.250209 64 0 1788 0 KEEP NA Plekhm1 NO B[a]P_2 chr11 103364101 103364101 T C intergenic "Plekhm1(dist=90123),Gm884(dist=31790)" NA NA intergenic "DQ726408(dist=55621),Gm884(dist=31790)" NA NA exonic ENSMUSG00000078632 nonsynonymous SNV ENSMUST00000153273:c.A1811G:p.E604G 11qE1 NA NA chr11 103364101 AGCxCCA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 151 0 0 39.282828 0.226667 0.02 1.1358 58 17 1668 486 60 60 0 0 TT 17.731485 59 0 1638 0 KEEP NA Plekhm1 NO B[a]P_2 chr11 103688582 103688582 C A exonic Nsf synonymous SNV NM_008740:c.G2100T:p.G700G exonic Nsf synonymous SNV uc007lvt.1:c.G2100T:p.G700G exonic ENSMUSG00000034187 synonymous SNV ENSMUST00000103075:c.G2100T:p.G700G 11qE1 NA NA chr11 103688582 CTTxCCT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 210 2 0 37.034357 0.206897 0.02 0.834433 69 18 1989 477 60 60 0 0 CC 27.057319 90 0 2519 0 KEEP - Nsf YES B[a]P_2 chr11 105202122 105202122 G T exonic Mrc2 synonymous SNV NM_008626:c.G2445T:p.V815V exonic Mrc2 synonymous SNV uc007lxh.1:c.G2550T:p.V850V exonic ENSMUSG00000020695 synonymous SNV ENSMUST00000021038:c.G2445T:p.V815V 11qE1 NA NA chr11 105202122 TGTxCGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 446 0 0 296.358845 0.579235 0.02 3.775868 77 106 2185 2999 60 60 0 0 GG 54.975027 183 0 5095 0 KEEP + Mrc2 YES B[a]P_2 chr11 106857954 106857954 G T exonic Kpna2 nonsynonymous SNV NM_010655:c.C82A:p.R28S exonic Kpna2 nonsynonymous SNV uc007lzz.1:c.C82A:p.R28S exonic ENSMUSG00000018362 nonsynonymous SNV ENSMUST00000018506:c.C82A:p.R28S 11qE1 NA NA chr11 106857954 GACxCAT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 247 4 1 97.983257 0.372549 0.02 2.693033 64 38 1644 1091 60 60 0 0 GG 31.253103 104 0 2656 0 KEEP - Kpna2 YES B[a]P_2 chr11 117654133 117654133 C G UTR3 Tmc8 NA NA UTR3 Tmc8 NA NA UTR3 ENSMUSG00000050106 NA NA 11qE2 NA NA chr11 117654133 CTGxCGC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.71725 0.717315 0.999909 64 0 0 13.25061 0.193548 0.02 -0.271865 25 6 719 170 60 60 0 0 CC 7.219062 24 0 670 0 KEEP + Tmc8 NO B[a]P_2 chr11 119755664 119755664 G C exonic Rptor nonsynonymous SNV NM_028898:c.G3572C:p.R1191P exonic Rptor nonsynonymous SNV uc011yit.1:c.G2309C:p.R770P exonic ENSMUSG00000025583 nonsynonymous SNV ENSMUST00000171135:c.G710C:p.R237P 11qE2 NA NA chr11 119755664 TCCxTGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 189 0 0 73.847359 0.337079 0.02 1.005772 59 30 1401 842 60 60 0 0 GG 20.093307 71 1 1661 10 KEEP + Rptor NO B[a]P_2 chr11 120229313 120229313 G T exonic Fscn2 nonsynonymous SNV NM_172802:c.G1369T:p.G457C exonic Fscn2 nonsynonymous SNV uc007msk.2:c.G1369T:p.G457C exonic ENSMUSG00000025380 nonsynonymous SNV ENSMUST00000026445:c.G1369T:p.G457C 11qE2 NA NA chr11 120229313 CGTxGCC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 246 2 0 138.646097 0.410448 0.02 2.215876 79 55 2195 1518 60 60 0 0 GG 24.058138 80 0 2209 0 KEEP + Fscn2 YES B[a]P_2 chr11 120518058 120518058 C A exonic Notum nonsynonymous SNV NM_175263:c.G724T:p.G242C exonic Notum nonsynonymous SNV uc007mty.2:c.G199T:p.G67C exonic ENSMUSG00000042988 nonsynonymous SNV ENSMUST00000106177:c.G724T:p.G242C 11qE2 NA NA chr11 120518058 TGCxCCC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.664267 0.668523 0.993634 45 0 0 37.554495 0.482759 0.02 -0.254314 15 14 424 396 60 60 0 0 CC 3.547051 12 0 309 0 KEEP - Notum YES B[a]P_2 chr11 18805722 18805722 G C exonic Meis1 nonsynonymous SNV NM_001193271:c.C935G:p.T312R exonic Meis1 nonsynonymous SNV uc007icl.2:c.C935G:p.T312R exonic ENSMUSG00000020160 nonsynonymous SNV ENSMUST00000118661:c.C395G:p.T132R 11qA3.1 NA NA chr11 18805722 CCTxTAT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 199 0 0 161.924993 0.59375 0.02 1.04162 39 57 1082 1629 60 60 0 0 GG 20.730887 69 0 1888 0 KEEP - Meis1 NO B[a]P_2 chr11 20236058 20236058 G C intergenic "Slc1a4(dist=3342),Sertad2(dist=207198)" NA NA intergenic "Slc1a4(dist=3342),Gm12034(dist=110342)" NA NA UTR5 ENSMUSG00000078965 NA NA 11qA3.1 "Score=0.998433;Name=No.14551,chr2:28788926" NA chr11 20236058 GCGxCTG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 393 6 123 116.094522 0.650794 0.02 1.241547 22 41 618 1143 60 60 0 0 GG 66.1631 220 0 6001 0 KEEP NA Slc1a4 NO B[a]P_2 chr11 3433359 3433359 A G intronic Smtn NA NA intronic Smtn NA NA ncRNA_intronic ENSMUSG00000087291 NA NA 11qA1 NA NA chr11 3433359 CCAxGCC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 96 0 0 33.995094 0.325581 0.02 -0.377065 29 14 821 391 60 60 0 0 AA 12.331142 41 0 1126 0 KEEP - Smtn NO B[a]P_2 chr11 3966500 3966500 C G exonic Sec14l3 synonymous SNV NM_001029937:c.C168G:p.L56L exonic Sec14l3 synonymous SNV uc007huf.2:c.C168G:p.L56L exonic ENSMUSG00000054986 synonymous SNV ENSMUST00000068322:c.C168G:p.L56L 11qA1 NA NA chr11 3966500 GCTxCGC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 144 0 0 83.932373 0.484375 0.02 1.330919 33 31 944 884 60 60 0 0 CC 17.447244 58 0 1644 0 KEEP + Sec14l3 NO B[a]P_2 chr11 43067654 43067654 G T intronic Atp10b NA NA intronic Atp10b NA NA ncRNA_intronic ENSMUSG00000085533 NA NA 11qA5 NA NA chr11 43067654 ACAxCAT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 101 0 0 86.1195 0.581818 0.02 1.212947 23 32 651 871 60 60 0 0 GG 12.031872 40 0 1137 0 KEEP + Atp10b YES B[a]P_2 chr11 43558576 43558576 C A intronic Ttc1 NA NA intronic Ttc1 NA NA intronic ENSMUSG00000041278 NA NA 11qB1.1 NA NA chr11 43558576 CCAxAAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 76 0 0 36.854101 0.482759 0.02 -0.254295 15 14 417 389 60 60 0 0 CC 11.416046 38 0 1015 0 KEEP - Ttc1 YES B[a]P_2 chr11 43589926 43589926 C G exonic Adra1b nonsynonymous SNV NM_007416:c.G985C:p.V329L exonic Adra1b nonsynonymous SNV uc007imy.1:c.G985C:p.V329L exonic ENSMUSG00000050541 nonsynonymous SNV ENSMUST00000167574:c.G985C:p.V329L 11qB1.1 NA NA chr11 43589926 ATAxGGC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 43 0 0 15.118899 0.315789 0.02 -0.166537 13 6 324 174 60 60 0 0 CC 5.39663 18 0 433 0 KEEP - Adra1b NO B[a]P_2 chr11 45758304 45758304 C G exonic Lsm11 nonsynonymous SNV NM_028185:c.G111C:p.L37F exonic Lsm11 nonsynonymous SNV uc007ins.1:c.G111C:p.L37F exonic ENSMUSG00000044847 nonsynonymous SNV ENSMUST00000062458:c.G111C:p.L37F 11qB1.1 NA NA chr11 45758304 GTAxAAG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970819 0.97082 0.999998 100 2 0 82.954324 0.566038 0.02 1.328816 23 30 633 844 60 60 0 0 CC 10.227332 34 0 962 0 KEEP - Lsm11 NO B[a]P_2 chr11 46452630 46452630 A G ncRNA_exonic Gm4926 NA NA ncRNA_exonic Gm4926 NA NA ncRNA_exonic ENSMUSG00000086909 NA NA 11qB1.1 NA NA chr11 46452630 GAGxTCC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 170 0 0 31.501152 0.163043 0.02 0.888539 77 15 2123 421 60 60 0 0 AA 15.634923 52 0 1397 0 KEEP - Gm4926 NO B[a]P_2 chr11 50664692 50664692 C A exonic Grm6 nonsynonymous SNV NM_173372:c.C49A:p.Q17K exonic Grm6 nonsynonymous SNV uc007iss.1:c.C49A:p.Q17K exonic ENSMUSG00000000617 nonsynonymous SNV ENSMUST00000000631:c.C49A:p.Q17K 11qB1.3 NA NA chr11 50664692 TCGxAGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954488 0.954491 0.999997 92 0 0 40.071239 0.346939 0.02 -0.429556 32 17 905 457 60 60 0 0 CC 9.011688 30 0 826 0 KEEP + Grm6 YES B[a]P_2 chr11 51459076 51459076 T C exonic N4bp3 nonsynonymous SNV NM_145974:c.A430G:p.S144G exonic N4bp3 nonsynonymous SNV uc007iue.1:c.A430G:p.S144G exonic ENSMUSG00000001053 nonsynonymous SNV ENSMUST00000001080:c.A430G:p.S144G 11qB1.3 NA NA chr11 51459076 GGCxGCC T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 147 0 0 72.220579 0.418919 0.02 1.144766 43 31 1228 793 60 60 0 0 TT 16.84095 56 0 1521 0 KEEP - N4bp3 NO B[a]P_2 chr11 5764232 5764232 C A exonic Aebp1 nonsynonymous SNV NM_009636:c.C538A:p.L180I exonic Aebp1 nonsynonymous SNV uc007hxg.2:c.C538A:p.L180I exonic ENSMUSG00000020473 nonsynonymous SNV ENSMUST00000102923:c.C538A:p.L180I 11qA1 NA NA chr11 5764232 TTAxTCC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693584 0.693668 0.999879 62 0 0 8.097063 0.133333 0.02 -0.26299 26 4 691 113 60 60 0 0 CC 6.616556 22 0 608 0 KEEP + Aebp1 YES B[a]P_2 chr11 5802112 5802112 C G exonic Gck nonsynonymous SNV NM_010292:c.G1229C:p.G410A exonic Gck nonsynonymous SNV uc007hxm.1:c.G1229C:p.G410A exonic ENSMUSG00000041798 nonsynonymous SNV ENSMUST00000102920:c.G1229C:p.G410A 11qA1 NA NA chr11 5802112 GAGxCAT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 269 2 0 56.789203 0.19403 0.02 2.412227 108 26 3012 730 60 60 0 0 CC 30.019961 100 0 2702 0 KEEP - Gck NO B[a]P_2 chr11 60745734 60745734 C G exonic Map2k3 nonsynonymous SNV NM_008928:c.C10G:p.P4A exonic Map2k3 nonsynonymous SNV uc007jgw.1:c.C10G:p.P4A exonic ENSMUSG00000018932 nonsynonymous SNV ENSMUST00000019076:c.C10G:p.P4A 11qB2 NA NA chr11 60745734 TCGxCCG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 52 0 0 62.279184 0.952381 0.02 -0.18411 1 20 30 545 60 60 0 0 CC 6.014147 20 0 538 0 KEEP + Map2k3 NO B[a]P_2 chr11 61485381 61485381 G T UTR3 Grap NA NA UTR3 Grap NA NA UTR3 ENSMUSG00000004837 NA NA 11qB2 NA NA chr11 61485381 AGCxATG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 82 0 0 80.523924 1 0.02 -0.227542 0 26 0 682 0 60 0 0 GG 13.535131 45 0 1278 0 KEEP + Grap YES B[a]P_2 chr11 6197194 6197194 G C exonic Ogdh nonsynonymous SNV NM_001252282:c.G214C:p.V72L exonic Ogdh nonsynonymous SNV uc007hyf.1:c.G214C:p.V72L exonic ENSMUSG00000020456 nonsynonymous SNV ENSMUST00000003461:c.G214C:p.V72L 11qA1 NA NA chr11 6197194 AGTxTAC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.99986 43 0 0 18.516825 0.388889 0.02 -0.166588 11 7 294 204 60 60 0 0 GG 5.714651 19 0 525 0 KEEP + Ogdh NO B[a]P_2 chr11 68371087 68371087 T G exonic Mfsd6l nonsynonymous SNV NM_146004:c.T1261G:p.L421V exonic Mfsd6l nonsynonymous SNV uc007jnv.1:c.T1261G:p.L421V exonic ENSMUSG00000048329 nonsynonymous SNV ENSMUST00000053211:c.T1261G:p.L421V 11qB3 NA NA chr11 68371087 TCGxTGC T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 92 0 0 20.923255 0.222222 0.02 -0.39458 35 10 975 265 60 60 0 0 TT 10.191239 34 0 907 0 KEEP + Mfsd6l NO B[a]P_2 chr11 69045839 69045839 C T exonic Gucy2e nonsynonymous SNV NM_008192:c.G1426A:p.V476M exonic Gucy2e nonsynonymous SNV uc007jpn.2:c.G1426A:p.V476M exonic ENSMUSG00000020890 nonsynonymous SNV ENSMUST00000021259:c.G1426A:p.V476M 11qB3 NA NA chr11 69045839 TCAxCAG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999999 70 0 0 73.859487 0.958333 0.02 -0.210461 1 23 27 647 60 60 0 0 CC 10.527391 35 0 974 0 KEEP - Gucy2e NO B[a]P_2 chr11 69173322 69173322 G T intronic Chd3 NA NA intronic Chd3 NA NA intronic ENSMUSG00000018474 NA NA 11qB3 NA NA chr11 69173322 AAGxACT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351366 0.353947 0.992708 31 0 0 59.847038 1 0.02 -0.16658 0 19 0 508 0 60 0 0 GG 3.001363 10 0 256 0 KEEP - Chd3 YES B[a]P_2 chr11 69279195 69279195 G C exonic Dnah2 nonsynonymous SNV NM_001081330:c.C6341G:p.S2114C exonic Dnahc2 nonsynonymous SNV uc007jqg.1:c.C6341G:p.S2114C exonic ENSMUSG00000005237 nonsynonymous SNV ENSMUST00000035539:c.C6323G:p.S2108C 11qB3 NA NA chr11 69279195 GTGxAGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 79 0 0 98.9972 0.939394 0.02 -0.289375 2 31 58 875 60 60 0 0 GG 11.720066 39 0 1096 0 KEEP - Dnah2 NO B[a]P_2 chr11 69436371 69436371 T A exonic Sat2 nonsynonymous SNV NM_026991:c.T212A:p.V71E exonic Sat2 nonsynonymous SNV uc007jqr.1:c.T212A:p.V71E exonic ENSMUSG00000069835 nonsynonymous SNV ENSMUST00000108656:c.T212A:p.V71E 11qB3 NA NA chr11 69436371 TTGxGGT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 126 0 0 112.227269 0.921053 0.02 -0.342014 3 35 85 1001 60 60 0 0 TT 20.741751 69 0 1833 0 KEEP + Sat2 NO B[a]P_2 chr11 69634563 69634563 C G exonic Spem1 nonsynonymous SNV NM_028855:c.G776C:p.G259A exonic Spem1 nonsynonymous SNV uc007jrv.1:c.G776C:p.G259A exonic ENSMUSG00000041165 nonsynonymous SNV ENSMUST00000045771:c.G776C:p.G259A 11qB3 NA NA chr11 69634563 CGGxCTG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 163 0 0 33.675073 0.27451 0.02 1.346838 37 14 1027 400 60 60 0 0 CC 27.555395 92 0 2453 0 KEEP - Spem1 NO B[a]P_2 chr11 73299664 73299664 T G exonic Olfr381 nonsynonymous SNV NM_147022:c.A661C:p.I221L exonic Olfr381 nonsynonymous SNV uc007kav.1:c.A661C:p.I221L exonic ENSMUSG00000072708 nonsynonymous SNV ENSMUST00000078358:c.A661C:p.I221L 11qB4 NA NA chr11 73299664 CAAxTTG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 266 0 0 242.034018 0.928571 0.02 1.057374 6 78 166 2143 60 60 0 0 TT 45.111316 150 0 4102 0 KEEP - Olfr381 NO B[a]P_2 chr11 78160834 78160834 G T splicing Unc119(NM_011676:exon2:c.334+1G>T) NA NA splicing Unc119(uc007kjb.1:exon2:c.334+1G>T) NA NA splicing "ENSMUSG00000002058(ENSMUST00000002127:exon2:c.334+1G>T,ENSMUST00000108295:exon2:c.334+1G>T,ENSMUST00000100755:exon2:c.139+1G>T)" NA NA 11qB5 NA NA chr11 78160834 CGGxTGA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 75 3 0 87.495815 0.903226 0.02 -0.271514 3 28 62 783 60 60 0 0 GG 11.126511 37 0 1002 0 KEEP + Unc119 YES B[a]P_2 chr11 87543677 87543677 G C exonic Rnf43 nonsynonymous SNV NM_172448:c.G893C:p.C298S exonic Rnf43 nonsynonymous SNV uc007kui.1:c.G377C:p.C126S exonic ENSMUSG00000034177 nonsynonymous SNV ENSMUST00000121782:c.G770C:p.C257S 11qC NA NA chr11 87543677 CGTxTGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 139 0 0 109.445933 0.573529 0.02 1.197281 29 39 808 1110 60 60 0 0 GG 17.143986 57 0 1578 0 KEEP + Rnf43 NO B[a]P_2 chr11 93741461 93741461 C G intronic Utp18 NA NA intronic Utp18 NA NA intronic ENSMUSG00000054079 NA NA 11qD NA NA chr11 93741461 AAAxCAA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 121 1 0 10.332373 0.119048 0.02 -0.368335 37 5 1060 146 70 70 0 0 CC 18.950917 63 0 1777 0 KEEP - Utp18 NO B[a]P_2 chr11 94254260 94254260 C G UTR5 Abcc3 NA NA UTR5 Abcc3 NA NA UTR5 ENSMUSG00000020865 NA NA 11qD NA NA chr11 94254260 AATxTCA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.95449 0.954491 0.999999 90 0 0 20.508201 0.204082 0.02 -0.42969 39 10 1119 265 60 60 0 0 CC 10.82987 36 0 1032 0 KEEP - Abcc3 NO B[a]P_2 chr11 94304469 94304469 C A intronic Cacna1g NA NA intronic Cacna1g NA NA intronic ENSMUSG00000020866 NA NA 11qD NA NA chr11 94304469 TGGxCAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 155 0 0 63.250433 0.361111 0.02 1.16216 46 26 1303 713 60 60 0 0 CC 23.457764 78 0 2155 0 KEEP - Cacna1g YES B[a]P_2 chr11 96909649 96909649 G T exonic Mrpl10 stoploss SNV NM_026154:c.G789T:p.X263Y exonic Mrpl10 stoploss SNV uc007ldm.1:c.G789T:p.X263Y exonic ENSMUSG00000001445 stoploss SNV ENSMUST00000001485:c.G789T:p.X263Y 11qD "Score=0.918469;Name=No.16887,chrX:95021934" NA chr11 96909649 CTAxCCG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 188 0 0 121.840522 0.54878 0.02 1.065696 37 45 1053 1249 60 60 0 0 GG 23.73157 79 0 2197 0 KEEP + Mrpl10 YES B[a]P_2 chr11 98903138 98903138 C G exonic Igfbp4 nonsynonymous SNV NM_010517:c.C328G:p.Q110E exonic Igfbp4 nonsynonymous SNV uc007lie.1:c.C328G:p.Q110E exonic ENSMUSG00000017493 nonsynonymous SNV ENSMUST00000017637:c.C328G:p.Q110E 11qD NA NA chr11 98903138 ATCxAGG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693593 0.693668 0.999892 61 0 0 34.26139 0.466667 0.02 -0.262936 16 14 462 366 60 60 0 0 CC 6.911629 23 0 642 0 KEEP + Igfbp4 NO B[a]P_2 chr11 99006499 99006499 G C exonic Ccr7 nonsynonymous SNV NM_007719:c.C910G:p.L304V exonic Ccr7 nonsynonymous SNV uc007lih.1:c.C910G:p.L304V exonic ENSMUSG00000037944 nonsynonymous SNV ENSMUST00000103134:c.C910G:p.L304V 11qD NA NA chr11 99006499 TGAxCTG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 120 2 0 89.352789 0.559322 0.02 1.276155 26 33 743 912 60 60 0 0 GG 13.535991 45 0 1273 0 KEEP - Ccr7 NO B[a]P_2 chr12 104681811 104681811 T A intronic Ifi27l2a NA NA intronic Ifi27l2a NA NA intronic "ENSMUSG00000021208,ENSMUSG00000079017" NA NA 12qE NA NA chr12 104681811 AGCxCAC T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 169 0 0 41.008827 0.25 0.02 1.063863 54 18 1537 500 60 60 0 0 TT 23.749932 79 0 2188 0 KEEP - Ifi27l2a NO B[a]P_2 chr12 111853230 111853230 G A exonic Dync1h1 nonsynonymous SNV NM_030238:c.G898A:p.D300N exonic Dync1h1 nonsynonymous SNV uc007pbo.1:c.G898A:p.D300N exonic ENSMUSG00000018707 nonsynonymous SNV ENSMUST00000018851:c.G898A:p.D300N 12qF1 NA NA chr12 111853230 CTGxACA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 102 0 0 41.322796 0.390244 0.02 -0.359557 25 16 715 456 60 60 0 0 GG 14.735347 49 0 1365 0 KEEP + Dync1h1 NO B[a]P_2 chr12 112556721 112556721 C G exonic Cdc42bpb nonsynonymous SNV NM_183016:c.G2272C:p.V758L exonic Cdc42bpb nonsynonymous SNV uc007pct.2:c.G2272C:p.V758L exonic ENSMUSG00000021279 nonsynonymous SNV ENSMUST00000041965:c.G2272C:p.V758L 12qF1 NA NA chr12 112556721 TCAxGGT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 515 0 0 310.800257 0.686275 0.02 4.236748 48 105 1184 3020 60 60 0 0 CC 79.313779 264 0 6695 0 KEEP - Cdc42bpb NO B[a]P_2 chr12 114863722 114863722 T A intergenic "Adam6a(dist=79097),NONE(dist=NONE)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076637 synonymous SNV ENSMUST00000103446:c.A348T:p.A116A 12qF1 "Score=0.957515;Name=No.26255,chr12:114899897" NA chr12 114863722 TCTxGCA T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 988 21 76 94.259692 0.157718 0.02 7.59013 251 47 7032 1282 60 60 0 1 TT 139.858303 465 0 12876 0 KEEP - Adam6a NO B[a]P_2 chr12 115220571 115220571 G T intergenic "Adam6a(dist=435946),Zfp386(dist=2065364)" NA NA ncRNA_intronic abParts NA NA upstream ENSMUSG00000076657 NA NA 12qF1 "Score=0.955682;Name=No.26271,chr12:115269417" NA chr12 115220571 AGCxGTC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162456 0.162467 0.999931 49 2 0 36.741683 1 0.02 -0.114002 0 11 0 315 0 60 0 0 GG 7.501166 25 0 626 0 KEEP - Adam6a YES B[a]P_2 chr12 119193192 119193192 G T exonic Dnah11 synonymous SNV NM_010060:c.C10476A:p.G3492G exonic Dnahc11 synonymous SNV uc007pie.1:c.C10476A:p.G3492G exonic ENSMUSG00000018581 synonymous SNV ENSMUST00000084806:c.C10476A:p.G3492G 12qF2 NA NA chr12 119193192 CTGxCCT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 186 1 0 36.456746 0.306122 0.02 -0.429374 34 15 914 424 60 60 0 0 GG 30.365832 101 0 2779 0 KEEP - Dnah11 YES B[a]P_2 chr12 119430794 119430794 A T exonic Dnah11 nonsynonymous SNV NM_010060:c.T593A:p.I198N exonic Dnahc11 nonsynonymous SNV uc007pie.1:c.T593A:p.I198N exonic ENSMUSG00000018581 nonsynonymous SNV ENSMUST00000084806:c.T593A:p.I198N 12qF2 NA NA chr12 119430794 GCAxTAG A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999999 74 0 0 27.653791 0.423077 0.02 -0.22798 15 11 412 301 60 60 0 0 AA 10.527111 35 0 967 0 KEEP - Dnah11 NO B[a]P_2 chr12 16578006 16578006 C G exonic Lpin1 nonsynonymous SNV NM_015763:c.G785C:p.C262S exonic Lpin1 nonsynonymous SNV uc007nbs.2:c.G785C:p.C262S exonic ENSMUSG00000020593 nonsynonymous SNV ENSMUST00000067124:c.G785C:p.C262S 12qA1.1 NA NA chr12 16578006 GGAxAAG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 64 1 0 22.463418 0.571429 0.02 -0.122765 6 8 163 228 60 60 0 0 CC 11.730691 39 0 1092 0 KEEP - Lpin1 NO B[a]P_2 chr12 17301025 17301025 G C intronic Atp6v1c2 NA NA intronic "Atp6c2,Atp6v1c2" NA NA intronic ENSMUSG00000020566 NA NA 12qA1.1 NA NA chr12 17301025 GTAxAGA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 102 0 0 56.453405 0.540541 0.02 -0.324489 17 20 487 580 60 60 0 0 GG 15.341239 51 0 1458 0 KEEP - Atp6v1c2 NO B[a]P_2 chr12 25352091 25352091 C A exonic Cys1 synonymous SNV NM_001004455:c.G339T:p.P113P exonic Cys1 synonymous SNV uc007nep.1:c.G339T:p.P113P exonic ENSMUSG00000062563 synonymous SNV ENSMUST00000074163:c.G339T:p.P113P 12qA1.3 NA NA chr12 25352091 CCCxGGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 166 2 0 27.297009 0.2 0.02 1.169538 48 12 1139 346 60 60 0 0 CC 23.73053 79 0 1931 0 KEEP - Cys1 YES B[a]P_2 chr12 29213435 29213435 A T intronic Dcdc2c NA NA intronic Dcdc2c NA NA intronic ENSMUSG00000020633 NA NA 12qA2 NA NA chr12 29213435 CCCxGGA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 49 2 0 9.301795 0.25 0.02 -0.140314 12 4 343 113 60 60 0 0 AA 7.504035 25 0 676 0 KEEP - Dcdc2c NO B[a]P_2 chr12 30539254 30539254 A G intronic Myt1l NA NA intronic Myt1l NA NA intronic ENSMUSG00000061911 NA NA 12qA2 NA NA chr12 30539254 ATCxTAC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 110 0 0 6.968999 0.117647 0.02 -0.298094 30 4 818 104 60 60 0 0 AA 18.64498 62 0 1664 0 KEEP + Myt1l NO B[a]P_2 chr12 32890291 32890291 T G exonic Pik3cg nonsynonymous SNV NM_001146200:c.A561C:p.E187D exonic Pik3cg nonsynonymous SNV uc007nib.2:c.A561C:p.E187D exonic ENSMUSG00000020573 nonsynonymous SNV ENSMUST00000020890:c.A561C:p.E187D 12qA3 NA NA chr12 32890291 CACxTCA T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 86 2 0 71.641771 0.651163 0.02 -0.376834 15 28 430 704 60 60 0 0 TT 10.225313 34 0 941 0 KEEP - Pik3cg NO B[a]P_2 chr12 34614089 34614089 T G UTR3 Ferd3l NA NA UTR3 Ferd3l NA NA UTR3 ENSMUSG00000046518 NA NA 12qA3 NA NA chr12 34614089 TGCxTGG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999998 89 0 0 29.041216 0.297872 0.02 -0.411912 33 14 935 348 60 60 0 0 TT 10.227136 34 0 953 0 KEEP + Ferd3l NO B[a]P_2 chr12 4234300 4234300 G T intronic Ptrhd1 NA NA ncRNA_intronic BC067010 NA NA intronic ENSMUSG00000073240 NA NA 12qA1.1 NA NA chr12 4234300 CCGxAGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 89 0 0 34.715196 0.333333 0.02 -0.394608 30 15 868 400 60 60 0 0 GG 11.420888 38 0 1055 0 KEEP + Ptrhd1 YES B[a]P_2 chr12 66222812 66222812 G C exonic Fancm nonsynonymous SNV NM_178912:c.G4961C:p.G1654A exonic Fancm nonsynonymous SNV uc007nrf.1:c.G4961C:p.G1654A exonic ENSMUSG00000055884 nonsynonymous SNV ENSMUST00000058889:c.G4961C:p.G1654A 12qC1 NA NA chr12 66222812 GTGxCCA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 87 2 0 26.416796 0.407407 0.02 -0.236711 16 11 451 291 60 60 0 0 GG 12.930873 43 0 1182 0 KEEP + Fancm NO B[a]P_2 chr12 68321906 68321906 C A intronic Mdga2 NA NA intronic Mdga2 NA NA intronic ENSMUSG00000034912 NA NA 12qC2 NA NA chr12 68321906 AGCxTAT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322772 0.322807 0.999892 44 0 0 27.497884 0.555556 0.02 -0.15785 8 10 230 281 60 60 0 0 CC 6.918034 23 0 639 0 KEEP - Mdga2 YES B[a]P_2 chr12 70298474 70298474 C T exonic Dnaaf2 nonsynonymous SNV NM_027269:c.G799A:p.V267I exonic 1110034A24Rik nonsynonymous SNV uc007nrt.1:c.G799A:p.V267I exonic ENSMUSG00000020973 nonsynonymous SNV ENSMUST00000021356:c.G799A:p.V267I 12qC2 NA NA chr12 70298474 CTAxGTG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967383 0.967425 0.999957 88 0 0 40.84827 0.326923 0.02 1.239632 35 17 859 470 60 60 0 0 CC 7.815892 26 0 674 0 KEEP - Dnaaf2 NO B[a]P_2 chr12 71213143 71213143 G T upstream Nin NA NA upstream Nin NA NA upstream ENSMUSG00000021068 NA NA 12qC2 NA NA chr12 71213143 CGCxTGT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 193 2 0 111.606321 0.684211 0.02 1.286697 18 39 388 1083 60 60 0 0 GG 32.85494 110 0 2526 0 KEEP NA Nin YES B[a]P_2 chr12 77140009 77140009 C G exonic Syne2 nonsynonymous SNV NM_001005510:c.C14738G:p.S4913C exonic Syne2 nonsynonymous SNV uc007nxr.1:c.C623G:p.S208C exonic ENSMUSG00000063450 nonsynonymous SNV ENSMUST00000085280:c.C521G:p.S174C 12qC3 NA NA chr12 77140009 TGTxCCT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 0.999999 57 0 0 13.22353 0.384615 0.02 -0.114015 8 5 234 146 60 60 0 0 CC 10.493465 35 0 966 0 KEEP + Syne2 NO B[a]P_2 chr12 77259649 77259649 G T exonic Esr2 nonsynonymous SNV NM_010157:c.C649A:p.R217S exonic Esr2 nonsynonymous SNV uc007nxu.1:c.C649A:p.R217S exonic ENSMUSG00000021055 nonsynonymous SNV ENSMUST00000110421:c.C649A:p.R217S 12qC3 NA NA chr12 77259649 TACxCCG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 57 2 0 20.657779 0.380952 0.02 -0.192826 13 8 342 229 60 60 0 0 GG 8.7165 29 0 744 0 KEEP - Esr2 YES B[a]P_2 chr12 79663905 79663905 G T intronic Gphn NA NA intronic Gphn NA NA intronic ENSMUSG00000047454 NA NA 12qC3 NA NA chr12 79663905 TCAxGTA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 81 0 0 13.653326 0.222222 0.02 -0.236779 21 6 597 170 60 60 0 0 GG 13.8369 46 0 1293 0 KEEP + Gphn YES B[a]P_2 chr12 80334982 80334982 C G exonic Zfyve26 nonsynonymous SNV NM_001008550:c.G7561C:p.G2521R exonic Zfyve26 nonsynonymous SNV uc007oae.1:c.G7561C:p.G2521R exonic ENSMUSG00000066440 nonsynonymous SNV ENSMUST00000021547:c.G7561C:p.G2521R 12qC3 NA NA chr12 80334982 CACxTCG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 104 0 0 55.379328 0.589744 0.02 -0.385625 16 23 458 559 60 60 0 0 CC 12.032277 40 0 1128 0 KEEP - Zfyve26 NO B[a]P_2 chr12 81822536 81822536 A T exonic Plekhd1 nonsynonymous SNV NM_001177503:c.A1157T:p.K386M exonic 3830431G21Rik nonsynonymous SNV uc007obf.2:c.A1157T:p.K386M exonic ENSMUSG00000066438 nonsynonymous SNV ENSMUST00000140770:c.A1157T:p.K386M 12qD1 NA NA chr12 81822536 ACAxGGA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 91 0 0 35.749099 0.306122 0.02 -0.429712 34 15 980 417 60 60 0 0 AA 11.375197 38 0 1028 0 KEEP + Plekhd1 NO B[a]P_2 chr12 83547878 83547878 C A exonic Sipa1l1 nonsynonymous SNV NM_172579:c.C5083A:p.L1695M exonic Sipa1l1 nonsynonymous SNV uc011yoo.1:c.C5083A:p.L1695M exonic ENSMUSG00000042700 nonsynonymous SNV ENSMUST00000053969:c.C5083A:p.L1695M 12qD1 NA NA chr12 83547878 CAGxTGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 63 0 0 11.20213 0.25 0.02 -0.175395 15 5 437 137 60 60 0 0 CC 8.723886 29 0 828 0 KEEP + Sipa1l1 YES B[a]P_2 chr12 8798229 8798229 G C exonic Sdc1 nonsynonymous SNV NM_011519:c.G763C:p.G255R exonic Sdc1 nonsynonymous SNV uc007nac.1:c.G763C:p.G255R exonic ENSMUSG00000020592 nonsynonymous SNV ENSMUST00000020911:c.G763C:p.G255R 12qA1.1 "Score=0.96213;Name=No.31548,chrX:67653801" NA chr12 8798229 CTGxGAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818391 0.818465 0.999909 67 0 0 56.407093 0.638889 0.02 -0.315419 13 23 369 557 60 60 0 0 GG 7.218473 24 0 666 0 KEEP + Sdc1 NO B[a]P_2 chr12 89114761 89114761 A T UTR5 Gm2016 NA NA UTR5 Gm2016 NA NA UTR5 ENSMUSG00000079029 NA NA 12qD2 "Score=0.974387;Name=No.26102,chr12:89486986" NA chr12 89114761 AGGxGTC A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 155 1 61 7.161681 0.137931 0.02 -0.254296 25 4 706 103 36 29 0 0 AA 27.603998 92 0 2480 0 KEEP + Gm2016 NO B[a]P_2 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 280 7 101 10.521477 0.075 0.02 0.99372 74 6 2075 169 55 29 0 0 CC 42.407478 141 0 3985 0 KEEP - Gm2042 YES B[a]P_2 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 326 8 40 11.950578 0.067961 0.02 2.489134 96 7 2649 197 60 37 0 0 TT 54.737132 182 0 4974 0 KEEP - Gm2042 NO B[a]P_2 chr12 99673369 99673369 T A exonic Kcnk10 nonsynonymous SNV NM_029911:c.A1256T:p.N419I exonic Kcnk10 nonsynonymous SNV uc007oqg.1:c.A1265T:p.N422I exonic ENSMUSG00000033854 nonsynonymous SNV ENSMUST00000085120:c.A1265T:p.N422I 12qE NA NA chr12 99673369 AGGxTGT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 78 0 0 29.07368 0.333333 0.02 -0.315675 24 12 665 333 60 60 0 0 TT 11.127349 37 0 1002 0 KEEP - Kcnk10 NO B[a]P_2 chr13 100016015 100016015 G T exonic Zfp366 nonsynonymous SNV NM_001004149:c.G1730T:p.G577V exonic Zfp366 nonsynonymous SNV uc007rpl.1:c.G1730T:p.G577V exonic ENSMUSG00000050919 nonsynonymous SNV ENSMUST00000056558:c.G1730T:p.G577V 13qD1 NA NA chr13 100016015 CTGxTGT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 95 0 0 18.204176 0.25 0.02 -0.394553 24 8 672 222 60 60 0 0 GG 11.428502 38 0 1053 0 KEEP + Zfp366 YES B[a]P_2 chr13 101003297 101003297 G A exonic Naip5 nonsynonymous SNV NM_010870:c.C800T:p.S267L exonic Naip5 nonsynonymous SNV uc007rql.1:c.C800T:p.S267L exonic ENSMUSG00000071203 nonsynonymous SNV ENSMUST00000049789:c.C800T:p.S267L 13qD1 "Score=0.971217;Name=No.34881,chr13:101053441" NA chr13 101003297 CCTxATA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 716 60 11 46.128736 0.109649 0.02 4.737582 203 25 5869 684 60 60 0 0 GG 111.009839 369 0 10683 0 KEEP - Naip5 NO B[a]P_2 chr13 101044339 101044339 C A intergenic "Naip5(dist=27048),Naip6(dist=6737)" NA NA intergenic "Naip5(dist=27048),Naip6(dist=6737)" NA NA intergenic "ENSMUSG00000071203(dist=28061),ENSMUSG00000078942(dist=6737)" NA NA 13qD1 "Score=0.971217;Name=No.34881,chr13:101053441" NA chr13 101044339 GTCxGTG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 728 2 48 101.415465 0.162866 0.02 8.169577 257 50 6760 1367 60 60 0 0 CC 94.609236 315 0 8119 0 KEEP NA Naip5 YES B[a]P_2 chr13 101076984 101076984 G A exonic "Naip6,Naip7" nonsynonymous SNV NM_010871:c.C800T:p.S267L exonic "Naip6,Naip7" nonsynonymous SNV uc007rqn.1:c.C800T:p.S267L exonic ENSMUSG00000078942 nonsynonymous SNV ENSMUST00000042220:c.C800T:p.S267L 13qD1 "Score=0.971217;Name=No.34881,chr13:100982499" NA chr13 101076984 CCTxATA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 638 65 15 16.949704 0.05914 0.02 3.161241 175 11 5028 298 60 60 0 1 GG 114.915546 382 0 10995 0 KEEP - Naip6 NO B[a]P_2 chr13 101148844 101148844 A G intergenic "Naip7(dist=61201),Naip1(dist=28881)" NA NA intergenic "Naip7(dist=61201),Naip1(dist=28881)" NA NA ncRNA_exonic ENSMUSG00000082956 NA NA 13qD1 "Score=0.971202;Name=No.34882,chr13:101015044" NA chr13 101148844 AGCxGAG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 253 1 23 111.592124 0.396552 0.02 2.561251 70 46 2009 1235 60 60 0 0 AA 32.785414 109 0 3033 0 KEEP NA Naip7 NO B[a]P_2 chr13 117700169 117700169 T C intronic Parp8 NA NA intronic Parp8 NA NA intronic ENSMUSG00000021725 NA NA 13qD2.3 NA NA chr13 117700169 TCAxATT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 59 0 0 27.399491 0.44 0.02 -0.219171 14 11 367 296 60 60 0 0 TT 8.7185 29 0 769 0 KEEP - Parp8 NO B[a]P_2 chr13 11819128 11819128 G C exonic Ryr2 nonsynonymous SNV NM_023868:c.C6433G:p.L2145V exonic Ryr2 nonsynonymous SNV uc007pld.1:c.C6433G:p.L2145V exonic ENSMUSG00000021313 nonsynonymous SNV ENSMUST00000021750:c.C6433G:p.L2145V 13qA1 NA NA chr13 11819128 CTAxTCC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 143 0 0 24.298691 0.203704 0.02 1.320017 43 11 1202 309 60 60 0 0 GG 21.658257 72 0 2037 0 KEEP - Ryr2 NO B[a]P_2 chr13 17819063 17819063 A C exonic Cdk13 nonsynonymous SNV NM_001081058:c.T2920G:p.L974V exonic Cdk13 nonsynonymous SNV uc007poc.2:c.T2920G:p.L974V exonic ENSMUSG00000041297 nonsynonymous SNV ENSMUST00000042365:c.T2920G:p.L974V 13qA2 NA NA chr13 17819063 ATAxGTC A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522155 0.522161 0.999988 61 1 0 31.702187 0.541667 0.02 -0.210395 11 13 318 327 60 60 0 0 AA 7.820682 26 0 728 0 KEEP - Cdk13 NO B[a]P_2 chr13 21514611 21514611 T C UTR3 Pgbd1 NA NA UTR3 Pgbd1 NA NA UTR3 ENSMUSG00000055313 NA NA 13qA3.1 NA NA chr13 21514611 AGCxCCT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 117 0 0 57.148994 0.431373 0.02 1.346271 29 22 842 618 60 60 0 0 TT 12.93465 43 0 1211 0 KEEP - Pgbd1 NO B[a]P_2 chr13 21702893 21702893 T G UTR3 Olfr1362 NA NA downstream Olfr1362 NA NA UTR3 ENSMUSG00000051258 NA NA 13qA3.1 NA NA chr13 21702893 CCAxTGT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999998 81 2 0 12.555048 0.146341 0.02 -0.35951 35 6 958 171 60 60 0 0 TT 9.923203 33 0 877 0 KEEP NA Olfr1362 NO B[a]P_2 chr13 24073434 24073434 A G exonic Scgn nonsynonymous SNV NM_145399:c.T161C:p.L54P exonic Scgn nonsynonymous SNV uc007pvk.1:c.T161C:p.L54P exonic ENSMUSG00000021337 nonsynonymous SNV ENSMUST00000021770:c.T161C:p.L54P 13qA3.1 NA NA chr13 24073434 ATAxGAG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 93 0 0 9.878923 0.116279 0.02 -0.377109 38 5 1097 142 60 60 0 0 AA 11.430391 38 0 1066 0 KEEP - Scgn NO B[a]P_2 chr13 24964113 24964113 G T exonic D130043K22Rik nonsynonymous SNV NM_001081051:c.G1558T:p.A520S exonic D130043K22Rik nonsynonymous SNV uc007pwn.1:c.G1558T:p.A520S exonic ENSMUSG00000006711 nonsynonymous SNV ENSMUST00000006893:c.G1558T:p.A520S 13qA3.1 NA NA chr13 24964113 GGCxCTA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 120 0 0 55.527748 0.411765 0.02 1.346743 30 21 697 605 60 60 0 0 GG 15.319471 51 0 1243 0 KEEP + D130043K22Rik YES B[a]P_2 chr13 27806269 27806269 A C exonic Prl7d1 nonsynonymous SNV NM_011120:c.T128G:p.L43R exonic Prl7d1 nonsynonymous SNV uc007pyb.2:c.T128G:p.L43R exonic ENSMUSG00000021348 nonsynonymous SNV ENSMUST00000021776:c.T128G:p.L43R 13qA3.1 NA NA chr13 27806269 TTCxGAT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 53 0 0 30.293933 0.5 0.02 -0.210409 12 12 334 318 60 60 0 0 AA 7.509827 25 0 672 0 KEEP - Prl7d1 NO B[a]P_2 chr13 33924642 33924642 G A exonic Serpinb6e nonsynonymous SNV NM_001045535:c.C976T:p.R326W exonic Serpinb6e nonsynonymous SNV uc007qal.1:c.C976T:p.R326W exonic ENSMUSG00000069248 nonsynonymous SNV ENSMUST00000077360:c.C820T:p.R274W 13qA3.3 NA NA chr13 33924642 ACCxTGG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 126 0 0 82.443468 0.516667 0.02 1.267565 29 31 727 857 60 60 0 0 GG 15.029477 50 0 1288 0 KEEP - Serpinb6e NO B[a]P_2 chr13 41117538 41117538 A C UTR3 Tmem14c NA NA UTR3 Tmem14c NA NA UTR3 ENSMUSG00000021361 NA NA 13qA3.3 NA NA chr13 41117538 GTAxCCC A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 144 1 0 46.116828 0.391304 0.02 -0.403313 28 18 763 509 60 70 0 0 AA 22.543424 75 0 1986 0 KEEP + Tmem14c NO B[a]P_2 chr13 42255574 42255574 C A exonic Hivep1 nonsynonymous SNV NM_007772:c.C5920A:p.L1974I exonic Hivep1 nonsynonymous SNV uc007qfk.1:c.C5920A:p.L1974I exonic ENSMUSG00000021366 nonsynonymous SNV ENSMUST00000060148:c.C5920A:p.L1974I 13qA4 NA NA chr13 42255574 TCTxTTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693584 0.693668 0.999879 60 0 0 41.925114 0.533333 0.02 -0.263074 14 16 408 433 60 60 0 0 CC 6.618485 22 0 635 0 KEEP + Hivep1 YES B[a]P_2 chr13 49196355 49196355 G T exonic Wnk2 nonsynonymous SNV NM_029361:c.C1052A:p.A351E exonic Wnk2 nonsynonymous SNV uc009val.1:c.C1052A:p.A351E exonic ENSMUSG00000037989 nonsynonymous SNV ENSMUST00000159559:c.C1052A:p.A351E 13qA5 NA NA chr13 49196355 GACxCTC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552849 0.552887 0.999931 60 0 0 39.768871 0.56 0.02 -0.218601 11 14 254 405 60 60 0 0 GG 7.508475 25 0 611 0 KEEP - Wnk2 YES B[a]P_2 chr13 49590241 49590241 C G intronic Cenpp NA NA intronic Cenpp NA NA UTR3 ENSMUSG00000074910 NA NA 13qA5 "Score=0.991163;Name=No.37281,chr3:35792587" NA chr13 49590241 AGAxTGT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918159 0.918171 0.999988 98 0 21 59.047528 0.5 0.02 -0.385809 22 22 598 618 60 60 0 0 CC 10.526611 35 0 961 0 KEEP - Cenpp NO B[a]P_2 chr13 54785389 54785389 C A exonic Rnf44 nonsynonymous SNV NM_001146025:c.G230T:p.G77V exonic Rnf44 nonsynonymous SNV uc007qou.2:c.G155T:p.G52V exonic ENSMUSG00000034928 nonsynonymous SNV ENSMUST00000125871:c.G230T:p.G77V 13qB1 NA NA chr13 54785389 CTGxCGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 161 0 0 77.406495 0.392405 0.02 1.100807 48 31 1359 856 60 60 0 0 CC 18.949569 63 0 1759 0 KEEP - Rnf44 YES B[a]P_2 chr13 55413672 55413672 G A exonic Nsd1 nonsynonymous SNV NM_008739:c.G6659A:p.R2220H exonic Nsd1 nonsynonymous SNV uc007qqj.1:c.G6350A:p.R2117H exonic ENSMUSG00000021488 nonsynonymous SNV ENSMUST00000021944:c.G6350A:p.R2117H 13qB1 NA NA chr13 55413672 TCCxTGA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 296 2 0 166.55298 0.460993 0.02 2.244156 76 65 1953 1778 60 60 0 0 GG 35.072239 117 0 2866 0 KEEP + Nsd1 NO B[a]P_2 chr13 55633442 55633442 T C exonic Ddx41 nonsynonymous SNV NM_134059:c.A1259G:p.K420R exonic Ddx41 nonsynonymous SNV uc007qro.2:c.A1259G:p.K420R exonic ENSMUSG00000021494 nonsynonymous SNV ENSMUST00000021956:c.A1259G:p.K420R 13qB1 NA NA chr13 55633442 ATCxTGG T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 101 0 0 49.718707 0.413043 0.02 -0.403402 27 19 774 542 60 60 0 0 TT 10.456457 44 1 1210 26 KEEP - Ddx41 NO B[a]P_2 chr13 56277978 56277978 G T exonic Tifab synonymous SNV NM_001168615:c.C12A:p.P4P exonic Tifab synonymous SNV uc007qsj.2:c.C12A:p.P4P exonic ENSMUSG00000049625 synonymous SNV ENSMUST00000061504:c.C12A:p.P4P 13qB1 NA NA chr13 56277978 GAGxGGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 81 0 0 41.09849 0.421053 0.02 -0.333241 22 16 630 447 60 60 0 0 GG 9.023547 30 0 835 0 KEEP - Tifab YES B[a]P_2 chr13 62807070 62807070 C A intergenic "6720489N17Rik(dist=81528),Mir713(dist=55029)" NA NA ncRNA_exonic AK139826 NA NA ncRNA_exonic ENSMUSG00000074863 NA NA 13qB3 "Score=0.915844;Name=No.33206,chr13:62304656" NA chr13 62807070 CATxTCC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291368 0.292001 0.997832 36 0 0 26.864782 0.588235 0.02 -0.14907 7 10 200 271 60 60 0 0 CC 4.807411 16 0 442 0 KEEP - 6720489N17Rik YES B[a]P_2 chr13 66955862 66955862 T A intergenic "2410141K09Rik(dist=413808),Uqcrb(dist=45695)" NA NA intergenic "AK049212(dist=101943),Uqcrb(dist=45695)" NA NA intronic ENSMUSG00000071295 NA NA 13qB3 "Score=0.980557;Name=No.34397,chr13:66750246" NA chr13 66955862 TACxTAT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 261 1 30 6.482247 0.085106 0.02 -0.420923 43 4 1225 105 60 23 0 0 TT 49.904069 166 0 4611 0 KEEP NA 2410141K09Rik NO B[a]P_2 chr13 72097125 72097125 G C exonic Irx1 synonymous SNV NM_010573:c.C885G:p.R295R exonic Irx1 synonymous SNV uc007rdd.1:c.C885G:p.R295R exonic ENSMUSG00000060969 synonymous SNV ENSMUST00000077337:c.C885G:p.R295R 13qC1 NA NA chr13 72097125 CAGxCGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.996225 0.996233 0.999992 123 0 0 85.091646 0.478261 0.02 1.188854 36 33 1005 901 60 60 0 0 GG 12.027811 40 0 1083 0 KEEP - Irx1 NO B[a]P_2 chr13 74186413 74186413 C G exonic Cep72 nonsynonymous SNV NM_028959:c.G1270C:p.A424P exonic Cep72 nonsynonymous SNV uc007rep.2:c.G172C:p.A58P exonic ENSMUSG00000021572 nonsynonymous SNV ENSMUST00000036456:c.G1270C:p.A424P 13qC1 NA NA chr13 74186413 GCGxCTC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612352 0.612407 0.999909 57 0 0 25.341208 0.37037 0.02 -0.23678 17 10 486 283 60 60 0 0 CC 7.171094 24 0 631 0 KEEP - Cep72 NO B[a]P_2 chr13 81030808 81030808 G C exonic Arrdc3 nonsynonymous SNV NM_001042591:c.G1093C:p.V365L exonic Arrdc3 nonsynonymous SNV uc007rhi.1:c.G1093C:p.V365L exonic ENSMUSG00000074794 nonsynonymous SNV ENSMUST00000099356:c.G1093C:p.V365L 13qC3 NA NA chr13 81030808 CCAxTGG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 73 0 0 27.891847 0.354839 0.02 -0.271852 20 11 564 314 60 60 0 0 GG 9.925229 33 0 921 0 KEEP + Arrdc3 NO B[a]P_2 chr13 94961796 94961796 C G intronic Lhfpl2 NA NA intronic Lhfpl2 NA NA intronic ENSMUSG00000045312 NA NA 13qD1 NA NA chr13 94961796 TGTxCCT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835706 0.835716 0.999988 72 0 0 42.440088 0.432432 0.02 -0.32448 21 16 607 458 60 60 0 0 CC 8.122103 27 0 767 0 KEEP + Lhfpl2 NO B[a]P_2 chr13 96441323 96441323 T G exonic Iqgap2 nonsynonymous SNV NM_027711:c.A2390C:p.D797A exonic Iqgap2 nonsynonymous SNV uc007rmp.1:c.A194C:p.D65A exonic ENSMUSG00000021676 nonsynonymous SNV ENSMUST00000068603:c.A2390C:p.D797A 13qD1 NA NA chr13 96441323 AAAxCCA T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 104 2 0 31.409447 0.282609 0.02 -0.403395 33 13 936 371 60 60 0 0 TT 14.41077 48 0 1303 0 KEEP - Iqgap2 NO B[a]P_2 chr14 123722584 123722584 T G exonic Nalcn synonymous SNV NM_177393:c.A2302C:p.R768R exonic Nalcn synonymous SNV uc011zqp.1:c.A2134C:p.R712R exonic ENSMUSG00000000197 synonymous SNV ENSMUST00000000201:c.A2302C:p.R768R 14qE5 NA NA chr14 123722584 GTCxTAG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760877 0.760887 0.999988 70 0 0 32.000923 0.424242 0.02 -0.289294 19 14 538 351 60 60 0 0 TT 6.568472 26 1 732 11 KEEP - Nalcn NO B[a]P_2 chr14 31502959 31502959 G C exonic Rft1 nonsynonymous SNV NM_177815:c.G1277C:p.C426S exonic Rft1 nonsynonymous SNV uc007svn.1:c.G1277C:p.C426S exonic ENSMUSG00000052395 nonsynonymous SNV ENSMUST00000170490:c.G1190C:p.C397S 14qB NA NA chr14 31502959 GGTxTGG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 119 0 0 85.068214 0.470588 0.02 1.198004 36 32 964 902 60 60 0 0 GG 12.618798 42 0 1135 0 KEEP + Rft1 NO B[a]P_2 chr14 32099195 32099195 C T exonic Dnah1 nonsynonymous SNV NM_001033668:c.G6440A:p.S2147N exonic Dnahc1 nonsynonymous SNV uc007sxk.2:c.G6440A:p.S2147N exonic ENSMUSG00000019027 nonsynonymous SNV ENSMUST00000048603:c.G6440A:p.S2147N 14qB NA NA chr14 32099195 GTGxTAC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 279 2 0 147.204339 0.486957 0.02 2.382043 59 56 1659 1551 60 60 0 0 CC 36.695962 122 0 3411 0 KEEP - Dnah1 NO B[a]P_2 chr14 35247582 35247582 G T exonic Bmpr1a synonymous SNV NM_009758:c.C513A:p.S171S exonic Bmpr1a synonymous SNV uc007tax.1:c.C513A:p.S171S exonic ENSMUSG00000021796 synonymous SNV ENSMUST00000165280:c.C513A:p.S171S 14qB NA NA chr14 35247582 GCTxGAG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 61 0 0 16.56793 0.269231 0.02 -0.227768 19 7 532 198 60 60 0 0 GG 8.724615 29 0 843 0 KEEP - Bmpr1a YES B[a]P_2 chr14 35550569 35550569 G T exonic Wapal synonymous SNV NM_001004436:c.G2976T:p.V992V exonic Wapal synonymous SNV uc007tbi.1:c.G2976T:p.V992V exonic ENSMUSG00000041408 synonymous SNV ENSMUST00000174559:c.G114T:p.V38V 14qB NA NA chr14 35550569 AGTxCTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 71 0 0 54.397293 0.633333 0.02 -0.263085 11 19 312 539 60 60 0 0 GG 9.325116 31 0 877 0 KEEP + Wapal YES B[a]P_2 chr14 35707938 35707938 G T intronic Grid1 NA NA intronic Grid1 NA NA intronic ENSMUSG00000041078 NA NA 14qB NA NA chr14 35707938 GACxTCA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 334 0 0 143.004486 0.482143 0.02 2.290486 58 54 1498 1510 70 70 0 0 GG 43.562928 145 0 3688 0 KEEP + Grid1 YES B[a]P_2 chr14 37882064 37882064 C A exonic Lrit2 nonsynonymous SNV NM_173418:c.C513A:p.F171L exonic Lrit2 nonsynonymous SNV uc007tbs.1:c.C390A:p.F130L exonic ENSMUSG00000043418 nonsynonymous SNV ENSMUST00000057176:c.C513A:p.F171L 14qB NA NA chr14 37882064 CTTxTTG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 79 0 0 30.303344 0.40625 0.02 -0.324328 19 13 542 335 60 60 0 0 CC 11.732257 39 0 1116 0 KEEP + Lrit2 YES B[a]P_2 chr14 44090143 44090143 G C intergenic "1700001F09Rik(dist=63799),Gm10375(dist=90149)" NA NA intergenic "1700001F09Rik(dist=63799),Gm10375(dist=90149)" NA NA intronic ENSMUSG00000091029 NA NA 14qC1 "Score=0.988773;Name=No.52771,chr14:43904794" NA chr14 44090143 AGAxAAA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 165 0 47 6.313956 0.125 0.02 -0.209473 21 3 570 88 53 20 0 0 GG 32.165415 107 0 2995 0 KEEP NA 1700001F09Rik NO B[a]P_2 chr14 45308689 45308689 A C intergenic "BC061237(dist=182673),Gm8267(dist=28153)" NA NA intergenic "BC061237(dist=182673),Gm8267(dist=28153)" NA NA ncRNA_exonic ENSMUSG00000090296 NA NA 14qC1 "Score=0.966972;Name=No.53278,chr14:45169758" NA chr14 45308689 GCAxGCA A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 241 3 17 64.786979 0.482759 0.02 1.186817 30 28 857 689 60 60 0 0 AA 43.004944 143 0 3968 0 KEEP NA BC061237 NO B[a]P_2 chr14 50759559 50759559 C A exonic Olfr728 nonsynonymous SNV NM_001011809:c.G754T:p.G252W exonic Olfr728 nonsynonymous SNV uc007tkr.1:c.G754T:p.G252W exonic ENSMUSG00000050030 nonsynonymous SNV ENSMUST00000051563:c.G754T:p.G252W 14qC1 NA NA chr14 50759559 GCCxAAA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.99986 43 0 0 33.039315 0.545455 0.02 -0.192927 10 12 282 339 60 60 0 0 CC 5.714349 19 0 533 0 KEEP - Olfr728 YES B[a]P_2 chr14 61391136 61391136 G T exonic C1qtnf9 nonsynonymous SNV NM_183175:c.G3T:p.M1I exonic C1qtnf9 nonsynonymous SNV uc007uff.2:c.G3T:p.M1I exonic ENSMUSG00000071347 nonsynonymous SNV ENSMUST00000025940:c.G3T:p.M1I 14qD1 NA NA chr14 61391136 CATxAGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 63 0 0 32.205828 0.48 0.02 -0.219243 13 12 374 340 60 60 0 0 GG 9.325742 31 0 890 0 KEEP + C1qtnf9 YES B[a]P_2 chr14 68742446 68742446 G T exonic Nefm nonsynonymous SNV NM_008691:c.C425A:p.A142D exonic Nefm nonsynonymous SNV uc007ulo.1:c.C425A:p.A142D exonic ENSMUSG00000022054 nonsynonymous SNV ENSMUST00000022638:c.C425A:p.A142D 14qD1 NA NA chr14 68742446 TGGxCGT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 275 0 0 152.148596 0.413793 0.02 2.317389 85 60 2369 1663 60 60 0 0 GG 30.615828 102 0 2740 0 KEEP - Nefm YES B[a]P_2 chr14 70760000 70760000 C T intergenic "Slc39a14(dist=8769),Piwil2(dist=12287)" NA NA intergenic "Slc39a14(dist=8769),Piwil2(dist=12287)" NA NA ncRNA_exonic ENSMUSG00000058745 NA NA 14qD2 "Score=0.942347;Name=No.55366,chr4:93468750" NA chr14 70760000 CTTxGAC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 202 0 0 18.10599 0.157895 0.02 1.195494 48 9 1319 246 60 60 0 0 CC 32.164068 107 0 2842 0 KEEP NA Slc39a14 NO B[a]P_2 chr14 70984910 70984910 T A exonic Fam160b2 nonsynonymous SNV NM_194345:c.A2177T:p.K726M exonic Fam160b2 nonsynonymous SNV uc007uol.2:c.A2177T:p.K726M exonic ENSMUSG00000022095 nonsynonymous SNV ENSMUST00000022690:c.A2177T:p.K726M 14qD2 NA NA chr14 70984910 AACxTGA T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 84 0 0 63.872403 0.545455 0.02 -0.385799 20 24 568 656 60 60 0 0 TT 9.625105 32 0 893 0 KEEP - Fam160b2 NO B[a]P_2 chr14 77992637 77992637 C A exonic Enox1 nonsynonymous SNV NM_001253759:c.C874A:p.R292S exonic Enox1 nonsynonymous SNV uc007urz.1:c.C874A:p.R292S exonic ENSMUSG00000022012 nonsynonymous SNV ENSMUST00000022589:c.C874A:p.R292S 14qD3 NA NA chr14 77992637 GAGxGTG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612365 0.612407 0.999931 62 0 0 34.883023 0.481481 0.02 -0.236639 14 13 351 368 60 60 0 0 CC 7.432449 25 0 608 0 KEEP + Enox1 YES B[a]P_2 chr14 79502059 79502059 G C exonic Vwa8 nonsynonymous SNV NM_027906:c.G4341C:p.Q1447H exonic 1300010F03Rik nonsynonymous SNV uc007usq.2:c.G4341C:p.Q1447H exonic ENSMUSG00000058997 nonsynonymous SNV ENSMUST00000040990:c.G4341C:p.Q1447H 14qD3 NA NA chr14 79502059 CCAxACA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 339 1 0 112.735847 0.447917 0.02 1.050331 53 43 1511 1209 60 60 0 0 GG 58.646551 195 0 5548 0 KEEP + Vwa8 NO B[a]P_2 chr15 100045748 100045748 G T exonic Dip2b nonsynonymous SNV NM_172819:c.G3910T:p.V1304L exonic Dip2b nonsynonymous SNV uc007xqr.2:c.G3910T:p.V1304L exonic ENSMUSG00000023026 nonsynonymous SNV ENSMUST00000023768:c.G3913T:p.V1305L 15qF1 NA NA chr15 100045748 GTTxTGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 188 0 0 158.35426 0.512821 0.02 2.463378 57 60 1611 1650 60 60 0 0 GG 16.330546 57 1 1607 7 KEEP + Dip2b YES B[a]P_2 chr15 101403142 101403142 G T exonic Krt75 synonymous SNV NM_133357:c.C627A:p.R209R exonic Krt75 synonymous SNV uc007xtp.1:c.C627A:p.R209R exonic ENSMUSG00000022986 synonymous SNV ENSMUST00000042957:c.C627A:p.R209R 15qF2 NA NA chr15 101403142 CCGxCGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 237 2 0 156.018745 0.468254 0.02 2.482141 67 59 1889 1657 60 60 0 0 GG 24.362742 81 0 2240 0 KEEP - Krt75 YES B[a]P_2 chr15 101589288 101589288 C A ncRNA_exonic Krt74 NA NA exonic Krt74 nonsynonymous SNV uc011zzt.1:c.G212T:p.R71L exonic ENSMUSG00000067596 nonsynonymous SNV ENSMUST00000088018:c.G1004T:p.R335L 15qF2 NA NA chr15 101589288 CAGxGGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 109 0 0 50.800713 0.431818 0.02 -0.394519 25 19 656 548 60 60 0 0 CC 14.718864 49 0 1246 0 KEEP - Krt74 YES B[a]P_2 chr15 101631284 101631284 T A exonic Krt73 nonsynonymous SNV NM_212485:c.A518T:p.N173I exonic Krt73 nonsynonymous SNV uc007xua.1:c.A518T:p.N173I exonic ENSMUSG00000063661 nonsynonymous SNV ENSMUST00000063292:c.A518T:p.N173I 15qF2 NA NA chr15 101631284 CAGxTGC T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 306 0 0 141.686506 0.341176 0.02 3.889898 112 58 3113 1614 60 60 0 0 TT 33.380316 111 0 3037 0 KEEP - Krt73 NO B[a]P_2 chr15 34246330 34246330 T G exonic Matn2 nonsynonymous SNV NM_016762:c.T62G:p.V21G exonic Matn2 nonsynonymous SNV uc007vll.1:c.T62G:p.V21G exonic ENSMUSG00000022324 nonsynonymous SNV ENSMUST00000022947:c.T62G:p.V21G 15qB3.1 NA NA chr15 34246330 CAGxTGA T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990921 0.990964 0.999957 103 0 0 64.669513 0.403226 0.02 1.249848 37 25 1030 709 60 60 0 0 TT 7.778759 26 0 668 0 KEEP + Matn2 NO B[a]P_2 chr15 37326782 37326782 C A intronic Ncald NA NA intronic Ncald NA NA intronic ENSMUSG00000051359 NA NA 15qB3.1 NA NA chr15 37326782 ATGxTTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 137 0 0 96.591833 0.461538 0.02 1.011221 42 36 1171 1028 60 60 0 0 CC 14.737462 49 0 1345 0 KEEP - Ncald YES B[a]P_2 chr15 40357862 40357862 G T ncRNA_intronic Gm16294 NA NA intergenic "BC048765(dist=358243),Zfpm2(dist=128726)" NA NA ncRNA_intronic ENSMUSG00000056332 NA NA 15qB3.1 NA NA chr15 40357862 CTAxGCA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 87 0 0 57.61521 0.458333 0.02 -0.420926 26 22 733 615 60 60 0 0 GG 9.325212 31 0 877 0 KEEP NA Gm16294 YES B[a]P_2 chr15 74419329 74419329 G T UTR3 Bai1 NA NA ncRNA_exonic mKIAA4089 NA NA UTR3 ENSMUSG00000034730 NA NA 15qD3 NA NA chr15 74419329 GTGxCCC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.848017 0.851984 0.995343 58 0 0 48.271793 0.473684 0.02 -0.333155 20 18 530 511 60 60 0 0 GG 4.209734 14 0 376 0 KEEP + Bai1 YES B[a]P_2 chr15 74644895 74644895 C A intronic Gml NA NA intronic Gml NA NA exonic ENSMUSG00000068349 nonsynonymous SNV ENSMUST00000089693:c.G145T:p.G49C 15qD3 NA NA chr15 74644895 GACxTCT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 397 2 6 203.508853 0.441989 0.02 3.498936 101 80 2863 2193 60 60 0 0 CC 44.216488 147 0 4175 0 KEEP - Gml YES B[a]P_2 chr15 75938592 75938592 C A exonic Eppk1 synonymous SNV NM_144848:c.G4518T:p.L1506L exonic Eppk1 synonymous SNV uc007wio.1:c.G4518T:p.L1506L intergenic "ENSMUSG00000075590(dist=18149),ENSMUSG00000044361(dist=11355)" NA NA 15qD3 NA NA chr15 75938592 TCGxAGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.714798 0.717315 0.99649 48 1 0 53.273006 0.612903 0.02 -0.271847 12 19 342 532 60 60 0 0 CC 4.507784 15 0 414 0 KEEP - Eppk1 YES B[a]P_2 chr15 76137069 76137069 T A exonic Oplah nonsynonymous SNV NM_153122:c.A7T:p.S3C exonic Oplah nonsynonymous SNV uc007wjo.1:c.A7T:p.S3C exonic ENSMUSG00000022562 nonsynonymous SNV ENSMUST00000023222:c.A7T:p.S3C 15qD3 NA NA chr15 76137069 GGCxGCC T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99716 0.997163 0.999997 108 0 0 78.900603 0.422535 0.02 1.170998 41 30 1158 856 60 60 0 0 TT 8.721624 29 0 788 0 KEEP - Oplah NO B[a]P_2 chr15 76536581 76536581 T G intronic Recql4 NA NA intronic Recql4 NA NA intronic ENSMUSG00000033762 NA NA 15qD3 NA NA chr15 76536581 TACxTAC T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 141 0 0 57.663883 0.303371 0.02 0.91523 62 27 1749 685 60 60 0 0 TT 12.333284 41 0 1159 0 KEEP - Recql4 NO B[a]P_2 chr15 78685911 78685911 G T UTR5 Lgals2 NA NA UTR5 Lgals2 NA NA UTR5 ENSMUSG00000043501 NA NA 15qE1 NA NA chr15 78685911 GGTxACA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 178 0 0 91.002103 0.444444 0.02 0.984982 45 36 1274 980 60 60 0 0 GG 20.756183 69 0 1969 0 KEEP - Lgals2 YES B[a]P_2 chr15 79188036 79188036 C G exonic Maff nonsynonymous SNV NM_010755:c.C222G:p.C74W exonic Maff nonsynonymous SNV uc007wth.1:c.C222G:p.C74W exonic ENSMUSG00000042622 nonsynonymous SNV ENSMUST00000096350:c.C222G:p.C74W 15qE1 NA NA chr15 79188036 GTGxCAG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98794 0.987943 0.999997 93 0 0 80.343747 0.5 0.02 1.267394 30 30 849 841 60 60 0 0 CC 8.422676 28 0 792 0 KEEP + Maff NO B[a]P_2 chr15 85374298 85374298 C A exonic Wnt7b nonsynonymous SNV NM_001163633:c.G170T:p.S57I exonic Wnt7b nonsynonymous SNV uc007xde.2:c.G383T:p.S128I exonic ENSMUSG00000022382 nonsynonymous SNV ENSMUST00000023015:c.G371T:p.S124I 15qE2 NA NA chr15 85374298 TGGxTGC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 106 0 0 64.603268 0.471698 0.02 1.328782 28 25 792 686 60 60 0 0 CC 11.41471 38 0 1059 0 KEEP - Wnt7b YES B[a]P_2 chr15 89205179 89205179 A G intronic Tymp NA NA intronic Tymp NA NA intronic ENSMUSG00000022615 NA NA 15qE3 NA NA chr15 89205179 AGCxCGG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999999 97 0 0 83.729923 0.727273 0.02 -0.385599 12 32 330 797 60 60 0 0 AA 10.524844 35 0 944 0 KEEP - Tymp NO B[a]P_2 chr15 89218523 89218523 C A exonic Klhdc7b nonsynonymous SNV NM_001160178:c.C1202A:p.P401H exonic Klhdc7b nonsynonymous SNV uc011zxw.1:c.C1202A:p.P401H exonic ENSMUSG00000091680 nonsynonymous SNV ENSMUST00000166926:c.C1202A:p.P401H 15qE3 NA NA chr15 89218523 GGCxCAT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 295 3 0 232.749547 0.497207 0.02 3.516083 90 89 2543 2442 60 60 0 0 CC 24.358972 81 0 2226 0 KEEP + Klhdc7b YES B[a]P_2 chr15 93509624 93509624 G T intergenic "Prickle1(dist=83302),9430014N10Rik(dist=225663)" NA NA intergenic "Prickle1(dist=83302),Adamts20(dist=590970)" NA NA intergenic "ENSMUSG00000036158(dist=83302),ENSMUSG00000022449(dist=590970)" NA NA 15qE3 "Score=0.98341;Name=No.60644,chr8:44380420" NA chr15 93509624 TAGxATG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 73 0 0 18.146935 0.307692 0.02 -0.227997 18 8 517 213 60 60 0 0 GG 9.322767 31 0 866 0 KEEP NA Prickle1 YES B[a]P_2 chr15 98886566 98886566 G T exonic Prph nonsynonymous SNV NM_001163588:c.G589T:p.A197S exonic Prph nonsynonymous SNV uc007xon.2:c.G589T:p.A197S exonic ENSMUSG00000023484 nonsynonymous SNV ENSMUST00000024249:c.G589T:p.A197S 15qF1 NA NA chr15 98886566 GATxCGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 90 0 0 47.075144 0.439024 0.02 -0.359539 23 18 657 507 60 60 0 0 GG 11.719713 39 0 1090 0 KEEP + Prph YES B[a]P_2 chr16 11220918 11220918 G C ncRNA_UTR3 Gspt1 NA NA ncRNA_UTR3 Gspt1 NA NA ncRNA_UTR3 ENSMUSG00000062203 NA NA 16qA1 NA NA chr16 11220918 AATxCTT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 290 2 0 37.881522 0.175258 0.02 0.944177 80 17 2203 493 60 60 0 0 GG 42.403691 141 0 3948 0 KEEP + Gspt1 NO B[a]P_2 chr16 14223695 14223695 A C exonic Myh11 nonsynonymous SNV NM_001161775:c.T2305G:p.F769V exonic Myh11 nonsynonymous SNV uc007yhd.2:c.T2305G:p.F769V exonic ENSMUSG00000018830 nonsynonymous SNV ENSMUST00000077248:c.T2341G:p.F781V 16qA1 NA NA chr16 14223695 AGAxGAT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 125 0 0 30.843238 0.283019 0.02 1.035372 38 15 1076 374 60 60 0 0 AA 16.543899 55 0 1544 0 KEEP - Myh11 NO B[a]P_2 chr16 14233689 14233689 G C exonic Myh11 nonsynonymous SNV NM_001161775:c.C1345G:p.R449G exonic Myh11 nonsynonymous SNV uc007yhd.2:c.C1345G:p.R449G exonic ENSMUSG00000018830 nonsynonymous SNV ENSMUST00000077248:c.C1381G:p.R461G 16qA1 NA NA chr16 14233689 GCCxATG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 100 0 0 72.87434 0.52 0.02 -0.438344 24 26 656 755 60 60 0 0 GG 11.423277 38 0 1009 0 KEEP - Myh11 NO B[a]P_2 chr16 17209241 17209241 G C exonic Rimbp3 nonsynonymous SNV NM_001033338:c.G435C:p.E145D exonic Rimbp3 nonsynonymous SNV uc007ykn.2:c.G435C:p.E145D exonic ENSMUSG00000071636 nonsynonymous SNV ENSMUST00000096223:c.G87C:p.E29D 16qA3 NA NA chr16 17209241 GGAxCTA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.999859 56 2 0 37.098169 0.466667 0.02 -0.262523 16 14 432 394 60 60 0 0 GG 5.414428 18 0 506 0 KEEP + Rimbp3 NO B[a]P_2 chr16 19566932 19566932 A G exonic Olfr169 synonymous SNV NM_001011855:c.T43C:p.L15L exonic Olfr169 synonymous SNV uc007yoy.1:c.T43C:p.L15L exonic ENSMUSG00000068535 synonymous SNV ENSMUST00000090062:c.T43C:p.L15L 16qA3 "Score=0.953242;Name=No.61862,chr16:19605677" NA chr16 19566932 CCAxGAG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 141 2 0 28.56988 0.27907 0.02 -0.377106 31 12 896 339 60 60 0 0 AA 24.064087 80 0 2244 0 KEEP - Olfr169 NO B[a]P_2 chr16 20542281 20542281 G T exonic Ap2m1 synonymous SNV NM_009679:c.G975T:p.P325P exonic Ap2m1 synonymous SNV uc007ypy.1:c.G969T:p.P323P exonic ENSMUSG00000022841 synonymous SNV ENSMUST00000090023:c.G969T:p.P323P 16qA3 NA NA chr16 20542281 CCCxACT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 132 0 0 54.614419 0.423077 0.02 1.337886 30 22 722 595 60 60 0 0 GG 19.230356 64 0 1618 0 KEEP + Ap2m1 YES B[a]P_2 chr16 22558053 22558053 T C intronic Dgkg NA NA intronic Dgkg NA NA intronic ENSMUSG00000022861 NA NA 16qB1 NA NA chr16 22558053 TGCxTGG T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 184 0 0 15.872519 0.103896 0.02 1.118264 69 8 1974 232 60 60 0 0 TT 22.559773 75 0 2100 0 KEEP - Dgkg NO B[a]P_2 chr16 23470258 23470258 G A intronic Masp1 NA NA exonic Masp1 synonymous SNV uc007yts.1:c.C1864T:p.L622L exonic ENSMUSG00000022887 synonymous SNV ENSMUST00000089883:c.C1864T:p.L622L 16qB1 NA NA chr16 23470258 GTAxGAC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668442 0.668523 0.999879 55 2 0 10.499161 0.172414 0.02 -0.254321 24 5 687 139 60 60 0 0 GG 6.617822 22 0 623 0 KEEP - Masp1 NO B[a]P_2 chr16 32186772 32186772 C A exonic Bex6 nonsynonymous SNV NM_001033539:c.C311A:p.S104Y exonic Bex6 nonsynonymous SNV uc007yyk.1:c.C311A:p.S104Y exonic ENSMUSG00000075269 nonsynonymous SNV ENSMUST00000099990:c.C311A:p.S104Y 16qB2 NA NA chr16 32186772 AATxTGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 71 0 0 14.881559 0.241379 0.02 -0.254271 22 7 622 185 60 60 0 0 CC 11.732652 39 0 1124 0 KEEP + Bex6 YES B[a]P_2 chr16 32246730 32246730 C A exonic Fbxo45 synonymous SNV NM_173439:c.G168T:p.L56L exonic Fbxo45 synonymous SNV uc007yyl.1:c.G168T:p.L56L exonic ENSMUSG00000035764 synonymous SNV ENSMUST00000042732:c.G168T:p.L56L 16qB2 NA NA chr16 32246730 CCGxAGC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 72 0 0 47.557255 0.607143 0.02 -0.245546 11 17 320 476 60 60 0 0 CC 11.431479 38 0 1089 0 KEEP - Fbxo45 YES B[a]P_2 chr16 32828727 32828727 C A intronic 1700021K19Rik NA NA intronic 1700021K19Rik NA NA intronic ENSMUSG00000035629 NA NA 16qB3 NA NA chr16 32828727 GGGxAGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990963 0.990964 0.999999 112 0 0 56.714849 0.370968 0.02 1.151617 39 23 1078 635 60 60 0 0 CC 10.828338 36 0 1011 0 KEEP - 1700021K19Rik YES B[a]P_2 chr16 34392078 34392078 C A intronic Kalrn NA NA intronic Kalrn NA NA intronic ENSMUSG00000061751 NA NA 16qB3 NA NA chr16 34392078 ACAxACA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 88 0 0 16.834936 0.333333 0.02 -0.411774 14 7 379 193 70 70 0 0 CC 11.064995 37 0 982 0 KEEP - Kalrn YES B[a]P_2 chr16 35347849 35347849 T C exonic Sec22a nonsynonymous SNV NM_133704:c.A377G:p.Y126C exonic Sec22a nonsynonymous SNV uc012aex.1:c.A377G:p.Y126C exonic ENSMUSG00000034473 nonsynonymous SNV ENSMUST00000168219:c.A377G:p.Y126C 16qB3 NA NA chr16 35347849 TTAxATC T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 57 0 0 22.696714 0.666667 0.02 -0.10522 4 8 108 222 60 60 0 0 TT 12.02881 40 0 1070 0 KEEP - Sec22a NO B[a]P_2 chr16 36722142 36722142 T C exonic Ildr1 nonsynonymous SNV NM_134109:c.T949C:p.S317P exonic Ildr1 nonsynonymous SNV uc007zcu.1:c.T817C:p.S273P exonic ENSMUSG00000022900 nonsynonymous SNV ENSMUST00000089618:c.T817C:p.S273P 16qB3 NA NA chr16 36722142 CTCxCCT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 114 0 0 20.029575 0.191489 0.02 -0.412177 38 9 1091 257 60 60 0 0 TT 16.51444 55 0 1498 0 KEEP + Ildr1 NO B[a]P_2 chr16 38374190 38374190 C A exonic Popdc2 nonsynonymous SNV NM_001081984:c.C886A:p.P296T exonic Popdc2 nonsynonymous SNV uc007zeu.1:c.C886A:p.P296T exonic ENSMUSG00000022803 nonsynonymous SNV ENSMUST00000023494:c.C886A:p.P296T 16qB3 NA NA chr16 38374190 TCCxCTG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 149 0 0 37.543208 0.239437 0.02 1.072626 54 17 1545 464 60 60 0 0 CC 18.048332 60 0 1688 0 KEEP + Popdc2 YES B[a]P_2 chr16 44378943 44378943 G C intronic Spice1 NA NA intronic Spice1 NA NA intronic ENSMUSG00000043065 NA NA 16qB4 NA NA chr16 44378943 TATxACT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 51 0 0 20.106132 0.636364 0.02 -0.105236 4 7 115 199 60 60 0 0 GG 8.724503 29 0 840 0 KEEP + Spice1 NO B[a]P_2 chr16 5036547 5036547 C T exonic Glyr1 nonsynonymous SNV NM_001079814:c.G316A:p.D106N exonic Glyr1 nonsynonymous SNV uc007ybl.1:c.G316A:p.D106N exonic ENSMUSG00000022536 nonsynonymous SNV ENSMUST00000023189:c.G316A:p.D106N 16qA1 NA NA chr16 5036547 CATxAGC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 189 0 0 96.968487 0.506849 0.02 1.055082 36 37 1030 1013 60 60 0 0 CC 27.075664 90 0 2600 0 KEEP - Glyr1 NO B[a]P_2 chr16 63568315 63568315 G T exonic Epha3 nonsynonymous SNV NM_010140:c.C2398A:p.R800S exonic Epha3 nonsynonymous SNV uc007zpy.1:c.C2398A:p.R800S exonic ENSMUSG00000052504 nonsynonymous SNV ENSMUST00000064405:c.C2398A:p.R800S 16qC1.3 NA NA chr16 63568315 TGCxGTA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 107 2 0 77.543724 0.658537 0.02 -0.359524 14 27 385 761 60 60 0 0 GG 13.784413 50 1 1369 11 KEEP - Epha3 YES B[a]P_2 chr16 77076633 77076633 A C exonic Usp25 synonymous SNV NM_013918:c.A1333C:p.R445R exonic Usp25 synonymous SNV uc007zsb.1:c.A1333C:p.R445R exonic ENSMUSG00000022867 synonymous SNV ENSMUST00000023580:c.A1333C:p.R445R 16qC3.1 NA NA chr16 77076633 AAAxGAT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999869 36 0 0 10.322541 0.444444 0.02 -0.078923 5 4 141 111 60 60 0 0 AA 6.316763 21 0 589 0 KEEP + Usp25 NO B[a]P_2 chr16 91227734 91227734 A G UTR3 Olig2 NA NA UTR3 Olig2 NA NA UTR3 ENSMUSG00000039830 NA NA 16qC3.3 NA NA chr16 91227734 CCTxGGG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739582 0.739671 0.999879 56 0 0 57.345658 0.625 0.02 -0.280583 12 20 315 570 60 60 0 0 AA 6.569018 22 0 560 0 KEEP + Olig2 NO B[a]P_2 chr16 91861385 91861385 A C intronic Itsn1 NA NA intronic Itsn1 NA NA intronic "ENSMUSG00000022956,ENSMUSG00000022957" NA NA 16qC4 NA NA chr16 91861385 TTAxGTT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 0.999999 72 0 0 18.58243 0.290323 0.02 -0.271788 22 9 623 224 60 60 0 0 AA 10.827791 36 0 997 0 KEEP + Itsn1 NO B[a]P_2 chr16 94681420 94681420 G A exonic Ttc3 nonsynonymous SNV NM_009441:c.G5221A:p.V1741M exonic Ttc3 nonsynonymous SNV uc008abd.1:c.G1846A:p.V616M exonic ENSMUSG00000040785 nonsynonymous SNV ENSMUST00000036349:c.G5167A:p.V1723M 16qC4 NA NA chr16 94681420 CTGxTGG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 99 2 0 56.481642 0.488372 0.02 -0.376959 22 21 603 594 60 60 0 0 GG 14.129301 47 0 1295 0 KEEP + Ttc3 NO B[a]P_2 chr16 9653564 9653564 A C exonic Grin2a nonsynonymous SNV NM_008170:c.T1932G:p.S644R exonic Grin2a nonsynonymous SNV uc007ydc.1:c.T1932G:p.S644R exonic ENSMUSG00000059003 nonsynonymous SNV ENSMUST00000032331:c.T1932G:p.S644R 16qA1 NA NA chr16 9653564 GTAxCTT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16246 0.162467 0.999957 47 1 0 12.823715 0.384615 0.02 -0.113996 8 5 220 142 60 60 0 0 AA 7.818316 26 0 702 0 KEEP - Grin2a NO B[a]P_2 chr17 13153546 13153546 C T UTR5 Acat2 NA NA UTR5 Acat2 NA NA UTR5 ENSMUSG00000023832 NA NA 17qA1 NA NA chr17 13153546 TCTxTGC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999997 97 0 0 56.042796 0.407407 0.02 1.2217 32 22 907 614 60 60 0 0 CC 9.624336 32 0 904 0 KEEP - Acat2 NO B[a]P_2 chr17 13153557 13153557 C T UTR5 Acat2 NA NA UTR5 Acat2 NA NA UTR5 ENSMUSG00000023832 NA NA 17qA1 NA NA chr17 13153557 TCTxAGC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999997 88 0 0 52.681726 0.446809 0.02 -0.412091 26 21 734 567 60 60 0 0 CC 9.610432 32 0 890 0 KEEP - Acat2 NO B[a]P_2 chr17 14818690 14818690 C A exonic Thbs2 nonsynonymous SNV NM_011581:c.G1282T:p.G428C exonic Thbs2 nonsynonymous SNV uc008anb.2:c.G1282T:p.G428C exonic ENSMUSG00000023885 nonsynonymous SNV ENSMUST00000024659:c.G1282T:p.G428C 17qA2 NA NA chr17 14818690 TGCxCAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.908971 0.909069 0.999892 74 0 0 68.122497 0.581395 0.02 -0.377073 18 25 517 689 60 60 0 0 CC 6.918194 23 0 643 0 KEEP - Thbs2 YES B[a]P_2 chr17 18381237 18381237 A T exonic Vmn2r94 stopgain SNV NM_001104543:c.T1754A:p.L585X exonic Vmn2r94 stopgain SNV uc009vax.1:c.T1754A:p.L585X exonic ENSMUSG00000090417 stopgain SNV ENSMUST00000172190:c.T1754A:p.L585X 17qA3.2 NA NA chr17 18381237 AGCxAAA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 577 2 0 93.977996 0.161404 0.02 6.057702 239 46 6707 1267 60 60 0 0 AA 75.459666 251 0 6912 0 KEEP - Vmn2r94 NO B[a]P_2 chr17 24987522 24987522 G C UTR5 Hagh NA NA UTR5 Hagh NA NA UTR5 ENSMUSG00000024158 NA NA 17qA3.3 NA NA chr17 24987522 GCTxTGC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.663892 0.668523 0.993072 45 0 0 21.993786 0.310345 0.02 -0.254314 20 9 576 255 60 60 0 0 GG 3.309181 11 0 316 0 KEEP + Hagh NO B[a]P_2 chr17 25297049 25297049 G C intronic Clcn7 NA NA intronic Clcn7 NA NA intronic ENSMUSG00000036636 NA NA 17qA3.3 NA NA chr17 25297049 TGGxCTA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 261 0 0 157.70277 0.513274 0.02 2.67807 55 58 1508 1640 60 60 0 0 GG 33.38809 111 0 3104 0 KEEP + Clcn7 NO B[a]P_2 chr17 25856792 25856792 C A intronic Chtf18 NA NA intronic Chtf18 NA NA intronic ENSMUSG00000019214 NA NA 17qA3.3 NA NA chr17 25856792 CAAxACC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 183 0 0 72.331617 0.322581 0.02 0.97867 63 30 1701 834 60 60 0 0 CC 21.052358 70 0 1925 0 KEEP - Chtf18 YES B[a]P_2 chr17 26417097 26417097 A G UTR3 Luc7l NA NA UTR3 Luc7l NA NA UTR3 ENSMUSG00000024188 NA NA 17qA3.3 NA NA chr17 26417097 GTAxCTT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351961 0.353947 0.994391 35 0 0 17.909422 0.368421 0.02 -0.16661 12 7 329 200 60 60 0 0 AA 3.909795 13 0 354 0 KEEP + Luc7l NO B[a]P_2 chr17 30992840 30992840 T A intronic Dnah8 NA NA intronic Dnahc8 NA NA intronic ENSMUSG00000033826 NA NA 17qA3.3 NA NA chr17 30992840 TTGxCAT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 116 0 0 50.247013 0.44186 0.02 1.081464 24 19 649 540 60 60 0 0 TT 12.330845 41 0 1116 0 KEEP + Dnah8 NO B[a]P_2 chr17 32554986 32554986 G T exonic Pglyrp2 nonsynonymous SNV NM_001271477:c.C1012A:p.Q338K exonic Pglyrp2 nonsynonymous SNV uc008bxa.2:c.C1012A:p.Q338K exonic ENSMUSG00000079563 nonsynonymous SNV ENSMUST00000114456:c.C1012A:p.Q338K 17qB1 NA NA chr17 32554986 CTTxGCT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.917589 0.918171 0.999366 69 0 0 40.406203 0.372093 0.02 -0.377092 27 16 772 451 60 60 0 0 GG 5.112431 17 0 477 0 KEEP - Pglyrp2 YES B[a]P_2 chr17 34168141 34168141 C A exonic Slc39a7 nonsynonymous SNV NM_008202:c.G63T:p.L21F exonic Slc39a7 nonsynonymous SNV uc008caw.1:c.G63T:p.L21F exonic ENSMUSG00000024327 nonsynonymous SNV ENSMUST00000025186:c.G63T:p.L21F 17qB1 NA NA chr17 34168141 CCCxAAA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.580216 0.58293 0.995343 44 0 0 35.373314 0.5 0.02 -0.228002 13 13 369 370 60 60 0 0 CC 4.211538 14 0 400 0 KEEP - Slc39a7 YES B[a]P_2 chr17 34349180 34349180 G T exonic Tap2 nonsynonymous SNV NM_011530:c.G1146T:p.M382I exonic Tap2 nonsynonymous SNV uc008cbx.2:c.G1146T:p.M382I exonic "ENSMUSG00000024339,ENSMUSG00000081512" nonsynonymous SNV ENSMUST00000025197:c.G1146T:p.M382I 17qB1 NA NA chr17 34349180 GATxGCC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 329 0 0 264.396894 0.587879 0.02 3.72919 68 97 1947 2668 60 60 0 0 GG 30.930914 103 0 2888 0 KEEP + Tap2 YES B[a]P_2 chr17 34715035 34715035 C A exonic Notch4 nonsynonymous SNV NM_010929:c.C2811A:p.H937Q exonic Notch4 nonsynonymous SNV uc008ccs.1:c.C2811A:p.H937Q exonic ENSMUSG00000015468 nonsynonymous SNV ENSMUST00000015612:c.C2811A:p.H937Q 17qB1 NA NA chr17 34715035 TCAxGGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 120 0 0 60.544489 0.410714 0.02 1.303641 33 23 784 660 60 60 0 0 CC 12.920004 43 0 1068 0 KEEP + Notch4 YES B[a]P_2 chr17 35060454 35060454 C A exonic Slc44a4 synonymous SNV NM_023557:c.C1113A:p.A371A exonic Slc44a4 synonymous SNV uc008ceh.2:c.C1113A:p.A371A exonic ENSMUSG00000007034 synonymous SNV ENSMUST00000169230:c.C657A:p.A219A 17qB1 NA NA chr17 35060454 GGCxGTG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 209 0 0 133.713687 0.485149 0.02 2.701923 52 49 1258 1407 60 60 0 0 CC 24.92161 83 0 2023 0 KEEP + Slc44a4 YES B[a]P_2 chr17 35060456 35060456 T A exonic Slc44a4 nonsynonymous SNV NM_023557:c.T1115A:p.V372E exonic Slc44a4 nonsynonymous SNV uc008ceh.2:c.T1115A:p.V372E exonic ENSMUSG00000007034 nonsynonymous SNV ENSMUST00000169230:c.T659A:p.V220E 17qB1 NA NA chr17 35060456 CCGxGAC T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 208 0 0 130.507346 0.48 0.02 0.916849 52 48 1436 1377 60 60 0 0 TT 24.359663 81 0 2188 0 KEEP + Slc44a4 NO B[a]P_2 chr17 35197890 35197890 A T intronic Ddah2 NA NA intronic Ddah2 NA NA intronic ENSMUSG00000007039 NA NA 17qB1 NA NA chr17 35197890 CCAxTAT A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 337 3 0 155.961302 0.371429 0.02 3.551245 110 65 3056 1751 60 60 0 0 AA 37.560265 125 0 3403 0 KEEP + Ddah2 NO B[a]P_2 chr17 35215079 35215079 C T exonic Ly6g6e nonsynonymous SNV NM_027366:c.C254T:p.T85I exonic Ly6g6e nonsynonymous SNV uc008cfo.1:c.C350T:p.T117I exonic ENSMUSG00000013766 nonsynonymous SNV ENSMUST00000172959:c.C350T:p.T117I 17qB1 NA NA chr17 35215079 CGAxCTA C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 236 0 0 227.551411 0.594203 0.02 2.359804 56 82 1492 2289 60 60 0 0 CC 22.823852 76 0 2076 0 KEEP + Ly6g6e NO B[a]P_2 chr17 3521737 3521737 T C exonic Tfb1m nonsynonymous SNV NM_146074:c.A702G:p.I234M exonic Tfb1m nonsynonymous SNV uc008aes.1:c.A702G:p.I234M exonic ENSMUSG00000036983 nonsynonymous SNV ENSMUST00000041003:c.A702G:p.I234M 17qA1 NA NA chr17 3521737 CTCxATC T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918107 0.918171 0.999931 80 0 0 9.580756 0.116279 0.02 -0.385802 38 5 1039 139 60 60 0 0 TT 7.518888 25 0 685 0 KEEP - Tfb1m NO B[a]P_2 chr17 35565273 35565273 T G exonic "H2-Q6,H2-Q8" synonymous SNV NM_023124:c.T948G:p.A316A exonic H2-Q6 synonymous SNV uc008chr.1:c.T753G:p.A251A exonic ENSMUSG00000073409 nonsynonymous SNV ENSMUST00000113877:c.T358G:p.L120V 17qB1 "Score=0.969905;Name=No.65659,chr17:35499753" NA chr17 35565273 AGCxTGG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1685 7 0 242.573706 0.165823 0.02 17.81678 659 131 18623 3340 60 60 0 0 TT 223.082435 742 0 20455 0 KEEP + H2-Q6 NO B[a]P_2 chr17 35576621 35576621 G T exonic "H2-Q7,H2-Q9" nonsynonymous SNV NM_001198560:c.G289T:p.G97W exonic "H2-Q7,H2-Q9" nonsynonymous SNV uc008chs.2:c.G289T:p.G97W exonic ENSMUSG00000060550 nonsynonymous SNV ENSMUST00000071951:c.G289T:p.G97W 17qB1 "Score=0.969905;Name=No.65659,chr17:35499753" NA chr17 35576621 CGAxGGA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1325 6 0 103.089028 0.12357 0.02 9.811197 383 54 10923 1482 60 60 0 0 GG 204.05775 683 1 18976 10 KEEP + H2-Q7 YES B[a]P_2 chr17 35824223 35824223 C A exonic Ddr1 synonymous SNV NM_001198831:c.G1374T:p.T458T exonic Ddr1 synonymous SNV uc008cii.2:c.G561T:p.T187T exonic ENSMUSG00000003534 synonymous SNV ENSMUST00000003628:c.G1374T:p.T458T 17qB1 NA NA chr17 35824223 AACxGTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818391 0.818465 0.999909 67 0 0 49.963633 0.514286 0.02 -0.306777 17 18 425 519 60 60 0 0 CC 7.212038 24 0 609 0 KEEP - Ddr1 YES B[a]P_2 chr17 35987320 35987320 C A exonic Mdc1 nonsynonymous SNV NM_001010833:c.C2179A:p.L727I exonic Mdc1 nonsynonymous SNV uc008cir.1:c.C2179A:p.L727I exonic ENSMUSG00000061607 nonsynonymous SNV ENSMUST00000082337:c.C2179A:p.L727I 17qB1 NA NA chr17 35987320 GAGxTTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 120 0 0 35.894811 0.340909 0.02 -0.385838 29 15 821 410 60 60 0 0 CC 18.332102 61 0 1684 0 KEEP + Mdc1 YES B[a]P_2 chr17 36118137 36118137 G T exonic Gnl1 nonsynonymous SNV NM_008136:c.G370T:p.G124C exonic Gnl1 nonsynonymous SNV uc008cjo.1:c.G370T:p.G124C exonic ENSMUSG00000024429 nonsynonymous SNV ENSMUST00000087200:c.G370T:p.G124C 17qB1 NA NA chr17 36118137 CCTxGCT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 113 2 0 46.909119 0.333333 0.02 1.2937 38 19 1078 536 60 60 0 0 GG 12.333031 41 0 1166 0 KEEP + Gnl1 YES B[a]P_2 chr17 36535267 36535267 G C intergenic "H2-M10.3(dist=29905),H2-M10.4(dist=61842)" NA NA intergenic "H2-M10.3(dist=29905),H2-M10.4(dist=61840)" NA NA ncRNA_exonic ENSMUSG00000092555 NA NA 17qB1 "Score=0.982973;Name=No.65042,chr1:46084758" NA chr17 36535267 GCTxTAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 121 0 15 45.488141 0.310345 0.02 1.383537 40 18 1135 525 60 60 0 0 GG 13.836005 46 0 1285 0 KEEP NA H2-M10.3 NO B[a]P_2 chr17 36951061 36951061 G A intronic H2-M10.6 NA NA intronic H2-M10.6 NA NA intronic ENSMUSG00000037130 NA NA 17qB1 NA NA chr17 36951061 GCTxTCA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 353 2 0 115.702803 0.307692 0.02 3.399429 117 52 3288 1362 60 60 0 0 GG 47.817914 159 0 4440 0 KEEP + H2-M10.6 NO B[a]P_2 chr17 38285666 38285666 C T exonic Olfr133 synonymous SNV NM_146831:c.C132T:p.A44A exonic Olfr133 synonymous SNV uc008cnz.1:c.C132T:p.A44A exonic ENSMUSG00000063240 synonymous SNV ENSMUST00000113636:c.C132T:p.A44A 17qB1 NA NA chr17 38285666 TGCxATC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 595 4 0 253.853855 0.420168 0.02 5.07851 138 100 3940 2765 60 60 0 0 CC 80.017624 266 0 7575 0 KEEP + Olfr133 NO B[a]P_2 chr17 38345301 38345301 C A exonic Olfr135 nonsynonymous SNV NM_146332:c.C110A:p.T37K exonic Olfr135 nonsynonymous SNV uc008cob.1:c.C110A:p.T37K exonic ENSMUSG00000057801 nonsynonymous SNV ENSMUST00000076245:c.C110A:p.T37K 17qB1 NA NA chr17 38345301 CCAxAGC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 681 4 0 402.866375 0.536232 0.02 6.441735 128 148 3522 4150 60 60 0 0 CC 92.920602 309 0 8565 0 KEEP + Olfr135 YES B[a]P_2 chr17 42733504 42733504 C A intronic Opn5 NA NA intronic Opn5 NA NA intronic ENSMUSG00000043972 NA NA 17qB3 NA NA chr17 42733504 TTCxAAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.518837 0.522161 0.993634 41 0 0 35.310696 0.541667 0.02 -0.210455 11 13 306 363 60 60 0 0 CC 3.602485 12 0 326 0 KEEP - Opn5 YES B[a]P_2 chr17 43631814 43631814 A G exonic Mep1a nonsynonymous SNV NM_008585:c.T410C:p.L137P exonic Mep1a nonsynonymous SNV uc008cpc.1:c.T410C:p.L137P exonic ENSMUSG00000023914 nonsynonymous SNV ENSMUST00000024707:c.T410C:p.L137P 17qB3 NA NA chr17 43631814 GAAxGTT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818352 0.818465 0.999863 58 0 0 42.591585 0.444444 0.02 -0.315693 20 16 558 457 60 60 0 0 AA 6.015786 20 0 558 0 KEEP - Mep1a NO B[a]P_2 chr17 46447062 46447062 C A exonic Abcc10 synonymous SNV NM_145140:c.G2847T:p.R949R exonic Abcc10 synonymous SNV uc008csn.1:c.G2847T:p.R949R exonic ENSMUSG00000032842 synonymous SNV ENSMUST00000095261:c.G2847T:p.R949R 17qC NA NA chr17 46447062 AGCxCGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899252 0.899314 0.999931 73 0 0 81.72292 0.690476 0.02 -0.368184 13 29 376 792 60 60 0 0 CC 7.51368 25 0 679 0 KEEP - Abcc10 YES B[a]P_2 chr17 46640094 46640094 G C exonic Cul9 nonsynonymous SNV NM_001081335:c.C6802G:p.R2268G exonic Cul9 nonsynonymous SNV uc008ctb.1:c.C2083G:p.R695G exonic ENSMUSG00000040327 nonsynonymous SNV ENSMUST00000066026:c.C6802G:p.R2268G 17qC NA NA chr17 46640094 AGCxCCA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 80 0 0 43.025786 0.5 0.02 -0.280024 16 16 381 450 60 60 0 0 GG 11.095041 37 0 873 0 KEEP - Cul9 NO B[a]P_2 chr17 56799588 56799588 C A intronic Catsperd NA NA intronic Tmem146 NA NA intronic ENSMUSG00000040828 NA NA 17qD NA NA chr17 56799588 TCAxTAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 431 3 0 222.932401 0.561644 0.02 2.11022 64 82 1769 2273 60 60 0 0 CC 62.258216 207 0 5732 0 KEEP + Catsperd YES B[a]P_2 chr17 57684777 57684777 C A upstream Vmn2r120 NA NA upstream Vmn2r120 NA NA upstream ENSMUSG00000090655 NA NA 17qD NA NA chr17 57684777 AACxCAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 143 1 0 51.867079 0.372881 0.02 1.08 37 22 1061 583 60 60 0 0 CC 19.552255 65 0 1833 0 KEEP NA Vmn2r120 YES B[a]P_2 chr17 68806671 68806671 G T exonic L3mbtl4 nonsynonymous SNV NM_177278:c.G458T:p.R153L exonic L3mbtl4 nonsynonymous SNV uc008dkk.2:c.G458T:p.R153L exonic ENSMUSG00000041565 nonsynonymous SNV ENSMUST00000093007:c.G458T:p.R153L 17qE1.2 NA NA chr17 68806671 CTCxGGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 43 0 0 20.947049 0.444444 0.02 -0.157807 10 8 264 225 60 60 0 0 GG 5.110359 17 0 446 0 KEEP + L3mbtl4 YES B[a]P_2 chr17 72160286 72160286 G T exonic Clip4 nonsynonymous SNV NM_001271483:c.G985T:p.G329W exonic Clip4 nonsynonymous SNV uc008dmx.2:c.G985T:p.G329W exonic ENSMUSG00000024059 nonsynonymous SNV ENSMUST00000024854:c.G985T:p.G329W 17qE1.3 NA NA chr17 72160286 GTTxGGA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.386567 0.387407 0.997832 41 0 0 33.775774 0.6 0.02 -0.175395 8 12 234 339 60 60 0 0 GG 4.812624 16 0 450 0 KEEP + Clip4 YES B[a]P_2 chr17 85393560 85393560 A T exonic Ppm1b nonsynonymous SNV NM_001159496:c.A527T:p.E176V exonic Ppm1b nonsynonymous SNV uc008dtk.2:c.A527T:p.E176V exonic ENSMUSG00000061130 nonsynonymous SNV ENSMUST00000112307:c.A527T:p.E176V 17qE4 NA NA chr17 85393560 TGGxGAA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 256 0 0 100.095519 0.341667 0.02 2.338189 79 41 2241 1140 60 60 0 0 AA 31.563585 105 0 2925 0 KEEP + Ppm1b NO B[a]P_2 chr17 85477778 85477778 A T intronic Prepl NA NA UTR3 Prepl NA NA intronic ENSMUSG00000024127 NA NA 17qE4 NA NA chr17 85477778 TCAxTTC A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.488823 0.490544 0.99649 39 0 0 22.10719 0.391304 0.02 -0.201672 14 9 386 245 60 60 0 0 AA 4.485524 15 0 396 0 KEEP - Prepl NO B[a]P_2 chr17 88986960 88986960 T A intronic Ppp1r21 NA NA intronic Klraq1 NA NA intronic ENSMUSG00000034709 NA NA 17qE4 NA NA chr17 88986960 TGCxTTG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981954 0.981955 0.999999 99 0 0 48.299851 0.350877 0.02 1.195424 37 20 1055 548 60 60 0 0 TT 10.225723 34 0 941 0 KEEP + Ppp1r21 NO B[a]P_2 chr18 21307165 21307165 G C exonic Garem nonsynonymous SNV NM_001033445:c.C634G:p.P212A exonic Fam59a nonsynonymous SNV uc008efg.1:c.C634G:p.P212A exonic ENSMUSG00000042680 nonsynonymous SNV ENSMUST00000049260:c.C634G:p.P212A 18qA2 NA NA chr18 21307165 ATGxAAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 237 0 0 228.227281 0.696429 0.02 2.80314 34 78 973 2210 60 60 0 0 GG 29.179116 97 0 2756 0 KEEP - Garem NO B[a]P_2 chr18 30432568 30432568 G A UTR5 Pik3c3 NA NA UTR5 Pik3c3 NA NA UTR5 ENSMUSG00000033628 NA NA 18qB1 NA NA chr18 30432568 CTCxCGG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973962 0.973965 0.999997 95 0 0 109.880862 0.703704 0.02 1.320165 16 38 397 1060 60 60 0 0 GG 9.013243 30 0 742 0 KEEP + Pik3c3 NO B[a]P_2 chr18 34633263 34633263 T A exonic Fam13b nonsynonymous SNV NM_146084:c.A928T:p.T310S exonic Fam13b nonsynonymous SNV uc008eko.1:c.A928T:p.T310S exonic ENSMUSG00000036501 nonsynonymous SNV ENSMUST00000040506:c.A928T:p.T310S 18qB1 NA NA chr18 34633263 CAGxAGT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353932 0.353947 0.999957 54 0 0 8.863887 0.210526 0.02 -0.166578 15 4 399 112 60 60 0 0 TT 7.818527 26 0 694 0 KEEP - Fam13b NO B[a]P_2 chr18 35731776 35731776 C T exonic Matr3 synonymous SNV NM_010771:c.C99T:p.T33T exonic Matr3 synonymous SNV uc008emg.2:c.C99T:p.T33T exonic ENSMUSG00000037236 synonymous SNV ENSMUST00000041514:c.C117T:p.T39T 18qB2 NA NA chr18 35731776 TACxCAG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 146 1 0 61.06295 0.380952 0.02 1.241112 39 24 1110 678 60 60 0 0 CC 22.860102 76 0 2121 0 KEEP + Matr3 NO B[a]P_2 chr18 35812762 35812762 G C exonic Prob1 nonsynonymous SNV NM_001270646:c.C2092G:p.H698D intergenic "2010001M09Rik(dist=3741),Spata24(dist=3581)" NA NA exonic ENSMUSG00000073600 nonsynonymous SNV ENSMUST00000097619:c.C2080G:p.H694D 18qB2 NA NA chr18 35812762 CATxGAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934481 0.934492 0.999988 83 0 0 22.182428 0.244444 0.02 -0.403295 34 11 972 278 60 60 0 0 GG 8.120777 27 0 754 0 KEEP NA Prob1 NO B[a]P_2 chr18 36921663 36921663 A G exonic Wdr55 nonsynonymous SNV NM_026464:c.A227G:p.K76R exonic Wdr55 nonsynonymous SNV uc008eol.1:c.A227G:p.K76R exonic ENSMUSG00000042660 nonsynonymous SNV ENSMUST00000049323:c.A227G:p.K76R 18qB2 "Score=0.89518;Name=No.69977,chr2:80700949" NA chr18 36921663 CCAxGGA A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 55 0 0 37.026999 0.857143 0.02 -0.12277 2 12 56 338 60 60 0 0 AA 9.023911 30 0 839 0 KEEP + Wdr55 NO B[a]P_2 chr18 37108222 37108222 T C exonic Pcdha3 nonsynonymous SNV NM_138662:c.T2362C:p.S788P exonic Pcdha3 nonsynonymous SNV uc008eow.2:c.T2362C:p.S788P exonic ENSMUSG00000091969 nonsynonymous SNV ENSMUST00000166050:c.T2422C:p.S808P 18qB2 NA NA chr18 37108222 TTCxCCA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 64 1 0 56.63356 0.703704 0.02 -0.236791 8 19 232 547 60 60 0 0 TT 9.908537 33 0 892 0 KEEP + Pcdha3 NO B[a]P_2 chr18 37903182 37903182 C G exonic Pcdhgb6 nonsynonymous SNV NM_033578:c.C1288G:p.P430A exonic Pcdhgb6 nonsynonymous SNV uc008eqy.1:c.C1288G:p.P430A exonic ENSMUSG00000023036 nonsynonymous SNV ENSMUST00000003599:c.C1288G:p.P430A 18qB3 NA NA chr18 37903182 AAGxCAG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 70 2 0 16.630746 0.259259 0.02 -0.23677 20 7 564 200 60 60 0 0 CC 10.226498 34 0 944 0 KEEP + Pcdhgb6 NO B[a]P_2 chr18 38117931 38117931 C A exonic Rell2 nonsynonymous SNV NM_153793:c.C767A:p.P256H exonic Rell2 nonsynonymous SNV uc008erm.2:c.C767A:p.P256H exonic ENSMUSG00000044024 nonsynonymous SNV ENSMUST00000163591:c.C494A:p.P165H 18qB3 NA NA chr18 38117931 CCCxTGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.521029 0.522161 0.997832 44 0 0 8.315123 0.166667 0.02 -0.210461 20 4 563 111 60 60 0 0 CC 4.812875 16 0 451 0 KEEP + Rell2 YES B[a]P_2 chr18 58997382 58997382 G T exonic Adamts19 nonsynonymous SNV NM_175506:c.G383T:p.G128V exonic Adamts19 nonsynonymous SNV uc008ezr.1:c.G383T:p.G128V exonic ENSMUSG00000053441 nonsynonymous SNV ENSMUST00000052907:c.G383T:p.G128V 18qD3 NA NA chr18 58997382 GGGxATC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 31 0 0 26.723865 0.714286 0.02 -0.122727 4 10 115 256 60 60 0 0 GG 5.097694 17 0 457 0 KEEP + Adamts19 YES B[a]P_2 chr18 64664601 64664601 T A exonic Nars nonsynonymous SNV NM_001142950:c.A935T:p.Q312L exonic Nars nonsynonymous SNV uc008fek.2:c.A932T:p.Q311L exonic ENSMUSG00000024587 nonsynonymous SNV ENSMUST00000025483:c.A935T:p.Q312L 18qE1 NA NA chr18 64664601 AACxGTG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 89 0 0 71.862278 0.641026 0.02 -0.342022 14 25 407 710 60 60 0 0 TT 11.420912 38 0 1048 0 KEEP - Nars NO B[a]P_2 chr18 65537665 65537665 A T intronic Alpk2 NA NA intronic Alpk2 NA NA intronic ENSMUSG00000032845 NA NA 18qE1 NA NA chr18 65537665 GTCxTTA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 87 2 0 10.869785 0.185185 0.02 -0.23676 22 5 609 141 60 60 0 0 AA 12.632003 42 0 1150 0 KEEP - Alpk2 NO B[a]P_2 chr18 66451383 66451383 C A exonic Ccbe1 nonsynonymous SNV NM_178793:c.G26T:p.R9L exonic Ccbe1 nonsynonymous SNV uc008ffr.1:c.G26T:p.R9L exonic ENSMUSG00000046318 nonsynonymous SNV ENSMUST00000061103:c.G26T:p.R9L 18qE1 NA NA chr18 66451383 CCCxGGC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 97 0 0 86.43296 0.725 0.02 -0.374926 11 29 241 827 60 60 0 0 CC 11.409329 38 0 918 0 KEEP - Ccbe1 YES B[a]P_2 chr18 74436216 74436216 A C exonic Mbd1 synonymous SNV NM_013594:c.A1212C:p.P404P exonic Mbd1 synonymous SNV uc008fpk.1:c.A627C:p.P209P exonic ENSMUSG00000024561 synonymous SNV ENSMUST00000097530:c.A1212C:p.P404P 18qE2 NA NA chr18 74436216 ACCxCCA A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 175 0 0 36.334909 0.253968 0.02 1.241185 47 16 1292 442 60 60 0 0 AA 26.155728 87 0 2310 0 KEEP + Mbd1 NO B[a]P_2 chr18 80326737 80326737 C A exonic Adnp2 nonsynonymous SNV NM_175028:c.G1195T:p.V399L exonic Adnp2 nonsynonymous SNV uc008fsk.1:c.G1195T:p.V399L exonic ENSMUSG00000053950 nonsynonymous SNV ENSMUST00000066743:c.G1195T:p.V399L 18qE3 NA NA chr18 80326737 TCAxGGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 161 0 0 155.646403 0.688312 0.02 1.217142 24 53 583 1511 60 60 0 0 CC 20.137931 67 0 1713 0 KEEP - Adnp2 YES B[a]P_2 chr18 80959673 80959673 G A exonic Atp9b synonymous SNV NM_001201569:c.C2049T:p.G683G exonic Atp9b synonymous SNV uc008fth.2:c.C2049T:p.G683G exonic ENSMUSG00000024566 synonymous SNV ENSMUST00000025458:c.C2049T:p.G683G 18qE3 NA NA chr18 80959673 CAGxCCC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 136 0 0 15.919903 0.170213 0.02 -0.412033 39 8 1093 214 60 60 0 0 GG 22.838041 76 0 2068 0 KEEP - Atp9b NO B[a]P_2 chr18 84838331 84838331 A G exonic Cndp2 nonsynonymous SNV NM_023149:c.T1202C:p.L401P exonic Cndp2 nonsynonymous SNV uc008fut.1:c.T1202C:p.L401P exonic ENSMUSG00000024644 stoploss SNV ENSMUST00000097500:c.T1201C:p.X401R 18qE4 NA NA chr18 84838331 TTCxGGG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865624 0.865745 0.99986 66 0 0 61.038211 0.615385 0.02 -0.34184 15 24 429 609 60 60 0 0 AA 5.413681 18 0 494 0 KEEP - Cndp2 NO B[a]P_2 chr19 10061407 10061407 G A exonic Best1 nonsynonymous SNV NM_011913:c.C1178T:p.T393I exonic Best1 nonsynonymous SNV uc008gou.2:c.C1178T:p.T393I exonic ENSMUSG00000037418 nonsynonymous SNV ENSMUST00000117346:c.C1178T:p.T393I 19qA NA NA chr19 10061407 ATGxTGC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 88 0 0 111.798681 0.972222 0.02 -0.315676 1 35 27 971 60 60 0 0 GG 13.233098 44 0 1203 0 KEEP - Best1 NO B[a]P_2 chr19 10656897 10656897 G C exonic Cyb561a3 nonsynonymous SNV NM_001282065:c.G95C:p.R32P exonic Cybasc3 nonsynonymous SNV uc008gqi.1:c.G95C:p.R32P exonic ENSMUSG00000034445 nonsynonymous SNV ENSMUST00000164276:c.G95C:p.R32P 19qA NA NA chr19 10656897 GGCxCGG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 68 0 0 78.331403 1 0.02 -0.210441 0 24 0 669 0 60 0 0 GG 11.095331 37 0 938 0 KEEP + Cyb561a3 NO B[a]P_2 chr19 12396972 12396972 A G exonic Olfr1437 nonsynonymous SNV NM_001011839:c.T344C:p.L115P exonic Olfr1437 nonsynonymous SNV uc008gtx.1:c.T344C:p.L115P exonic ENSMUSG00000047100 nonsynonymous SNV ENSMUST00000052558:c.T344C:p.L115P 19qA "Score=0.907263;Name=No.72622,chr19:12370654" NA chr19 12396972 ATGxGGC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 317 0 1 94.152377 0.268456 0.02 2.280653 109 40 3109 1127 60 60 0 0 AA 41.509388 138 0 3852 0 KEEP - Olfr1437 NO B[a]P_2 chr19 25237539 25237539 G C exonic Dock8 nonsynonymous SNV NM_028785:c.G3952C:p.A1318P exonic Dock8 nonsynonymous SNV uc008hba.1:c.G3952C:p.A1318P exonic ENSMUSG00000052085 nonsynonymous SNV ENSMUST00000025831:c.G3952C:p.A1318P 19qB NA NA chr19 25237539 ATCxCTG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 361 1 0 83.138143 0.268657 0.02 2.511903 98 36 2262 998 60 60 0 0 GG 52.433106 175 0 4083 0 KEEP + Dock8 NO B[a]P_2 chr19 26743381 26743381 G A intronic Smarca2 NA NA intronic Smarca2 NA NA intronic ENSMUSG00000024921 NA NA 19qC1 NA NA chr19 26743381 GGTxTTG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 103 3 0 15.828724 0.210526 0.02 -0.333167 30 8 833 205 60 60 0 0 GG 15.941079 53 0 1469 0 KEEP + Smarca2 NO B[a]P_2 chr19 41111651 41111651 C G exonic Dntt nonsynonymous SNV NM_001043228:c.C217G:p.H73D exonic Dntt nonsynonymous SNV uc008hlo.1:c.C217G:p.H73D exonic ENSMUSG00000025014 nonsynonymous SNV ENSMUST00000051806:c.C217G:p.H73D 19qC3 NA NA chr19 41111651 ACCxACA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 47 0 0 23.351245 0.588235 0.02 -0.148941 7 10 196 236 60 60 0 0 CC 7.520508 25 0 712 0 KEEP + Dntt NO B[a]P_2 chr19 4142995 4142995 C T exonic Gpr152 synonymous SNV NM_206973:c.C534T:p.D178D exonic Gpr152 synonymous SNV uc008fyx.1:c.C534T:p.D178D exonic ENSMUSG00000044724 synonymous SNV ENSMUST00000096338:c.C534T:p.D178D 19qA NA NA chr19 4142995 TGAxCTG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 388 1 0 75.1952 0.19774 0.02 3.632033 142 35 3895 967 60 60 0 0 CC 51.062623 170 0 4579 0 KEEP + Gpr152 NO B[a]P_2 chr19 41450498 41450498 C T exonic Pik3ap1 nonsynonymous SNV NM_031376:c.G271A:p.A91T exonic Pik3ap1 nonsynonymous SNV uc008hlu.1:c.G271A:p.A91T exonic ENSMUSG00000025017 nonsynonymous SNV ENSMUST00000059672:c.G271A:p.A91T 19qC3 NA NA chr19 41450498 AGGxACG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934481 0.934492 0.999988 84 0 0 86.689764 0.695652 0.02 -0.401874 14 32 379 836 60 60 0 0 CC 8.057484 27 0 728 0 KEEP - Pik3ap1 NO B[a]P_2 chr19 41940098 41940098 T A intronic Rrp12 NA NA intronic Rrp12 NA NA intronic ENSMUSG00000035049 NA NA 19qC3 NA NA chr19 41940098 AGCxCAT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 77 0 0 95.160443 0.8 0.02 -0.350754 8 32 224 886 60 60 0 0 TT 9.023413 30 0 834 0 KEEP - Rrp12 NO B[a]P_2 chr19 42682186 42682186 G T exonic Loxl4 nonsynonymous SNV NM_001164311:c.C317A:p.T106N exonic Loxl4 nonsynonymous SNV uc008hns.2:c.C317A:p.T106N exonic ENSMUSG00000025185 nonsynonymous SNV ENSMUST00000171432:c.C317A:p.T106N 19qC3 NA NA chr19 42682186 TCGxTGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 94 0 0 17.42709 0.210526 0.02 -0.412139 30 8 835 221 60 60 0 0 GG 11.703677 39 0 1033 0 KEEP - Loxl4 YES B[a]P_2 chr19 4871854 4871854 A T exonic Actn3 nonsynonymous SNV NM_013456:c.T383A:p.I128N exonic Actn3 nonsynonymous SNV uc008gbf.1:c.T383A:p.I128N exonic ENSMUSG00000006457 nonsynonymous SNV ENSMUST00000006626:c.T383A:p.I128N 19qA NA NA chr19 4871854 ACAxTTT A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 84 0 0 26.42025 0.289474 0.02 -0.341985 27 11 743 311 60 60 0 0 AA 8.709681 29 0 772 0 KEEP - Actn3 NO B[a]P_2 chr19 56507868 56507868 G T exonic Casp7 nonsynonymous SNV NM_007611:c.G247T:p.G83C exonic Casp7 nonsynonymous SNV uc008hyw.1:c.G247T:p.G83C exonic ENSMUSG00000025076 nonsynonymous SNV ENSMUST00000026062:c.G247T:p.G83C 19qD2 NA NA chr19 56507868 ACAxGTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.90903 0.909069 0.999957 76 0 0 85.955907 0.697674 0.02 -0.377049 13 30 362 831 60 60 0 0 GG 7.820608 26 0 727 0 KEEP + Casp7 YES B[a]P_2 chr19 59533045 59533045 C A ncRNA_exonic Emx2os NA NA ncRNA_exonic Emx2os NA NA ncRNA_exonic ENSMUSG00000087095 NA NA 19qD3 NA NA chr19 59533045 CGCxGAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 141 0 0 127.923755 0.767857 0.02 1.401204 13 43 357 1206 60 60 0 0 CC 20.144834 67 0 1793 0 KEEP - Emx2os YES B[a]P_2 chr19 6343510 6343510 G A exonic Map4k2 nonsynonymous SNV NM_009006:c.G712A:p.D238N exonic Map4k2 nonsynonymous SNV uc008gij.1:c.G445A:p.D149N exonic ENSMUSG00000024948 nonsynonymous SNV ENSMUST00000130382:c.G580A:p.D194N 19qA NA NA chr19 6343510 AGAxATA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 249 0 0 324.233476 0.971154 0.02 2.576775 3 101 86 2820 60 60 0 0 GG 35.480421 118 0 3340 0 KEEP + Map4k2 NO B[a]P_2 chr1 101863874 101863874 G T exonic Cntnap5b nonsynonymous SNV NM_172851:c.G293T:p.G98V exonic Cntnap5b nonsynonymous SNV uc007cfy.1:c.G293T:p.G98V exonic ENSMUSG00000067028 nonsynonymous SNV ENSMUST00000086738:c.G293T:p.G98V 1qE1.1 NA NA chr1 101863874 ATGxGAG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 70 0 0 32.392693 0.571429 0.02 -0.184147 9 12 255 329 60 60 0 0 GG 11.650387 39 0 1051 0 KEEP + Cntnap5b YES B[a]P_2 chr1 10327474 10327474 A T exonic Cpa6 synonymous SNV NM_177834:c.T918A:p.A306A exonic Cpa6 synonymous SNV uc007ahr.1:c.T390A:p.A130A exonic ENSMUSG00000042501 synonymous SNV ENSMUST00000035577:c.T918A:p.A306A 1qA2 NA NA chr1 10327474 TACxGCC A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 87 0 0 14.202814 0.25 0.02 -0.210467 18 6 512 172 60 60 0 0 AA 14.738539 49 0 1365 0 KEEP - Cpa6 NO B[a]P_2 chr1 10709716 10709716 G T exonic Cpa6 nonsynonymous SNV NM_177834:c.C93A:p.H31Q exonic Cpa6 nonsynonymous SNV uc007ahq.1:c.C93A:p.H31Q exonic ENSMUSG00000042501 nonsynonymous SNV ENSMUST00000035577:c.C93A:p.H31Q 1qA2 NA NA chr1 10709716 AGAxTGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 60 0 0 11.66777 0.277778 0.02 -0.15783 13 5 357 139 60 60 0 0 GG 9.926488 33 0 931 0 KEEP - Cpa6 YES B[a]P_2 chr1 111962350 111962350 A G exonic Cdh7 synonymous SNV NM_172853:c.A957G:p.Q319Q exonic Cdh7 synonymous SNV uc007chw.1:c.A957G:p.Q319Q exonic ENSMUSG00000026312 synonymous SNV ENSMUST00000027542:c.A957G:p.Q319Q 1qE2.1 NA NA chr1 111962350 ACAxGAA A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 54 0 0 15.09475 0.333333 0.02 -0.157534 12 6 326 172 60 60 0 0 AA 7.520253 25 0 706 0 KEEP + Cdh7 NO B[a]P_2 chr1 121958550 121958550 A C intronic Sctr NA NA intronic Sctr NA NA intronic ENSMUSG00000026387 NA NA 1qE2.3 NA NA chr1 121958550 AGAxGTT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 84 2 0 16.519738 0.209302 0.02 -0.377022 34 9 977 218 60 60 0 0 AA 10.528134 35 0 984 0 KEEP + Sctr NO B[a]P_2 chr1 129873117 129873117 T C exonic Zranb3 nonsynonymous SNV NM_027678:c.A1541G:p.E514G exonic Zranb3 nonsynonymous SNV uc007cld.1:c.A1541G:p.E514G exonic ENSMUSG00000036086 nonsynonymous SNV ENSMUST00000037426:c.A1541G:p.E514G 1qE4 NA NA chr1 129873117 TTTxCAA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.99986 37 0 0 35.649276 0.705882 0.02 -0.149085 5 12 142 344 60 60 0 0 TT 5.693708 19 0 503 0 KEEP - Zranb3 NO B[a]P_2 chr1 137967551 137967551 C T exonic Cacna1s synonymous SNV NM_001081023:c.C606T:p.L202L exonic Cacna1s synonymous SNV uc007cuf.1:c.C606T:p.L202L exonic ENSMUSG00000026407 synonymous SNV ENSMUST00000057096:c.C606T:p.L202L 1qE4 NA NA chr1 137967551 GCTxGTC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 159 1 0 37.350202 0.207317 0.02 0.976732 65 17 1589 474 60 60 0 0 CC 18.922472 63 0 1523 0 KEEP + Cacna1s NO B[a]P_2 chr1 138068233 138068233 C T exonic Kif21b nonsynonymous SNV NM_001039472:c.C4400T:p.S1467L exonic Kif21b nonsynonymous SNV uc007cul.1:c.C4400T:p.S1467L exonic ENSMUSG00000041642 nonsynonymous SNV ENSMUST00000075164:c.C4400T:p.S1467L 1qE4 NA NA chr1 138068233 CTTxAAA C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 116 2 0 34.448544 0.306122 0.02 -0.438441 34 15 969 404 60 60 0 0 CC 16.244862 54 0 1550 0 KEEP + Kif21b NO B[a]P_2 chr1 152478322 152478322 C T exonic Hmcn1 nonsynonymous SNV NM_001024720:c.G11248A:p.V3750I exonic Hmcn1 nonsynonymous SNV uc007cyj.1:c.G11248A:p.V3750I exonic ENSMUSG00000066842 nonsynonymous SNV ENSMUST00000074783:c.G11248A:p.V3750I 1qG1 NA NA chr1 152478322 CAAxGCC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 105 0 0 58.437884 0.55 0.02 -0.350683 18 22 474 599 60 60 0 0 CC 16.531512 55 0 1409 0 KEEP + Hmcn1 NO B[a]P_2 chr1 160225729 160225729 C A exonic Brinp2 nonsynonymous SNV NM_207583:c.G97T:p.A33S exonic Fam5b nonsynonymous SNV uc007ddq.2:c.G97T:p.A33S exonic ENSMUSG00000004031 nonsynonymous SNV ENSMUST00000004133:c.G97T:p.A33S 1qH1 NA NA chr1 160225729 CAGxCAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 148 0 0 136.248687 0.648649 0.02 1.144612 26 48 743 1342 60 60 0 0 CC 18.281339 61 0 1644 0 KEEP - Brinp2 YES B[a]P_2 chr1 160717717 160717717 T G intronic Pappa2 NA NA intronic Pappa2 NA NA intronic ENSMUSG00000073530 NA NA 1qH1 NA NA chr1 160717717 AACxTAC T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 77 0 0 13.303028 0.25 0.02 -0.245486 21 7 607 168 60 60 0 0 TT 11.128822 37 0 1033 0 KEEP - Pappa2 NO B[a]P_2 chr1 167282227 167282227 C G intronic Dcaf6 NA NA intronic Dcaf6 NA NA intronic ENSMUSG00000026571 NA NA 1qH2.3 NA NA chr1 167282227 ACAxGTG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 115 0 0 49.122118 0.545455 0.02 -0.289154 15 18 361 504 60 60 0 0 CC 17.676894 59 0 1417 0 KEEP - Dcaf6 NO B[a]P_2 chr1 168312221 168312221 G A intronic Tada1 NA NA intronic "Tada1,Tada1l" NA NA intronic ENSMUSG00000026563 NA NA 1qH2.3 NA NA chr1 168312221 GCAxAAG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099658 0.099721 0.999366 32 0 0 9.5838 0.4 0.02 -0.087676 6 4 171 106 60 60 0 0 GG 5.114292 17 0 491 0 KEEP + Tada1 NO B[a]P_2 chr1 173509264 173509264 G A exonic Cd244 nonsynonymous SNV NM_018729:c.G956A:p.G319E exonic Cd244 nonsynonymous SNV uc007dos.1:c.G956A:p.G319E exonic ENSMUSG00000004709 nonsynonymous SNV ENSMUST00000004829:c.G956A:p.G319E 1qH3 NA NA chr1 173509264 CTGxAGA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 95 0 0 57.479545 0.645161 0.02 -0.324481 11 20 316 567 60 60 0 0 GG 13.236259 44 0 1256 0 KEEP + Cd244 NO B[a]P_2 chr1 174104171 174104171 A G exonic Dcaf8 nonsynonymous SNV NM_153555:c.A803G:p.K268R exonic Dcaf8 nonsynonymous SNV uc007dpx.2:c.A803G:p.K268R exonic ENSMUSG00000026554 nonsynonymous SNV ENSMUST00000074144:c.A803G:p.K268R 1qH3 NA NA chr1 174104171 GCAxGAA A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934489 0.934492 0.999997 86 0 0 63.42751 0.511111 0.02 -0.403413 22 23 631 660 60 60 0 0 AA 9.024202 30 0 846 0 KEEP + Dcaf8 NO B[a]P_2 chr1 174489918 174489918 A C intronic Vsig8 NA NA intronic Vsig8 NA NA intronic ENSMUSG00000049598 NA NA 1qH3 NA NA chr1 174489918 GTAxGTG A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 40 1 0 6.630268 0.266667 0.02 -0.131474 11 4 319 85 60 60 0 0 AA 5.41432 18 0 503 0 KEEP + Vsig8 NO B[a]P_2 chr1 175571411 175571411 T G intronic Pyhin1 NA NA intronic Pyhin1 NA NA intronic ENSMUSG00000043263 NA NA 1qH3 "Score=0.944642;Name=No.500,chr1:175432445" NA chr1 175571411 TGGxTAT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 91 0 0 63.077357 0.571429 0.02 -0.368208 18 24 501 641 60 60 0 0 TT 13.534841 45 0 1243 0 KEEP + Pyhin1 NO B[a]P_2 chr1 176067630 176067630 G T exonic Olfr424 nonsynonymous SNV NM_146721:c.G754T:p.G252C exonic Olfr424 nonsynonymous SNV uc007dst.1:c.G754T:p.G252C exonic ENSMUSG00000051528 nonsynonymous SNV ENSMUST00000053941:c.G754T:p.G252C 1qH3 NA NA chr1 176067630 TATxGCA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 233 2 0 105.133049 0.349593 0.02 2.312046 80 43 2265 1192 60 60 0 0 GG 23.457015 78 0 2216 0 KEEP + Olfr424 YES B[a]P_2 chr1 182077097 182077097 C T exonic Cdc42bpa nonsynonymous SNV NM_001033285:c.C4388T:p.S1463F exonic Cdc42bpa nonsynonymous SNV uc007dvu.2:c.C4349T:p.S1450F exonic ENSMUSG00000026490 nonsynonymous SNV ENSMUST00000135056:c.C2036T:p.S679F 1qH4 NA NA chr1 182077097 TCTxCGT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 255 2 0 52.362364 0.255814 0.02 1.039308 64 22 1849 631 60 60 0 0 CC 38.204087 127 0 3612 0 KEEP + Cdc42bpa NO B[a]P_2 chr1 182507805 182507805 G T exonic Parp1 nonsynonymous SNV NM_007415:c.G378T:p.K126N exonic Parp1 nonsynonymous SNV uc007dwi.1:c.G378T:p.K126N exonic ENSMUSG00000026496 nonsynonymous SNV ENSMUST00000027777:c.G378T:p.K126N 1qH4 NA NA chr1 182507805 CAAxGGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 154 0 0 93.649213 0.576271 0.02 1.177835 25 34 713 949 60 60 0 0 GG 22.860477 76 0 2136 0 KEEP + Parp1 YES B[a]P_2 chr1 184339596 184339596 G T intronic Trp53bp2 NA NA intronic Trp53bp2 NA NA intronic ENSMUSG00000026510 NA NA 1qH5 NA NA chr1 184339596 GGCxTGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.99986 60 0 0 22.131812 0.333333 0.02 -0.236711 18 9 473 253 60 60 0 0 GG 5.710164 19 0 480 0 KEEP + Trp53bp2 YES B[a]P_2 chr1 192882753 192882753 G A exonic Tatdn3 nonsynonymous SNV NM_001163421:c.C202T:p.P68S exonic Tatdn3 nonsynonymous SNV uc007eby.2:c.C202T:p.P68S exonic ENSMUSG00000026632 nonsynonymous SNV ENSMUST00000027945:c.C202T:p.P68S 1qH6 NA NA chr1 192882753 CTGxGTG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 75 0 0 24.105183 0.322581 0.02 -0.271831 21 10 589 278 60 60 0 0 GG 9.926461 33 0 927 0 KEEP - Tatdn3 NO B[a]P_2 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353909 0.353947 0.999892 50 0 0 8.411155 0.25 0.02 -0.165969 12 4 313 104 60 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik YES B[a]P_2 chr1 37680683 37680683 G T exonic 2010300C02Rik nonsynonymous SNV NM_028096:c.C2978A:p.P993H exonic 2010300C02Rik nonsynonymous SNV uc007arw.1:c.C2147A:p.P716H exonic ENSMUSG00000026090 nonsynonymous SNV ENSMUST00000061505:c.C1106A:p.P369H 1qB NA NA chr1 37680683 CCAxGGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888837 0.888875 0.999957 78 0 0 72.846076 0.65 0.02 -0.359498 14 26 395 717 60 60 0 0 GG 7.820618 26 0 728 0 KEEP - 2010300C02Rik YES B[a]P_2 chr1 45396773 45396773 G T exonic Col3a1 nonsynonymous SNV NM_009930:c.G2497T:p.G833C exonic Col3a1 nonsynonymous SNV uc007awq.2:c.G2497T:p.G833C exonic ENSMUSG00000026043 nonsynonymous SNV ENSMUST00000172410:c.G1771T:p.G591C 1qC1.1 NA NA chr1 45396773 AAAxGTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 43 0 0 15.077507 0.4 0.02 -0.131538 9 6 255 166 60 60 0 0 GG 8.422438 28 0 788 0 KEEP + Col3a1 YES B[a]P_2 chr1 59540820 59540820 G T exonic Fzd7 nonsynonymous SNV NM_008057:c.G1017T:p.M339I exonic Fzd7 nonsynonymous SNV uc011wlq.1:c.G1017T:p.M339I exonic ENSMUSG00000041075 nonsynonymous SNV ENSMUST00000114246:c.G1017T:p.M339I 1qC1.3 NA NA chr1 59540820 CATxGTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 88 0 0 58.910219 0.511111 0.02 -0.394157 22 23 610 615 60 60 0 0 GG 10.215805 34 0 932 0 KEEP + Fzd7 YES B[a]P_2 chr1 65109790 65109790 C T exonic Crygd nonsynonymous SNV NM_007776:c.G95A:p.R32H exonic Crygd nonsynonymous SNV uc007bhg.2:c.G95A:p.R32H exonic ENSMUSG00000067299 nonsynonymous SNV ENSMUST00000146122:c.G86A:p.R29H 1qC2 NA NA chr1 65109790 CAGxGGC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.608972 0.612407 0.994391 59 1 19 16.916228 0.388889 0.02 -0.236692 11 7 286 188 36 36 0 0 CC 7.191092 24 0 577 0 KEEP - Crygd NO B[a]P_2 chr1 65109792 65109792 G C exonic Crygd nonsynonymous SNV NM_007776:c.C93G:p.S31R exonic Crygd nonsynonymous SNV uc007bhg.2:c.C93G:p.S31R exonic ENSMUSG00000067299 nonsynonymous SNV ENSMUST00000146122:c.C84G:p.S28R 1qC2 NA NA chr1 65109792 GCGxCTG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.609555 0.612407 0.995343 61 1 19 17.314505 0.388889 0.02 -0.236728 11 7 315 192 36 36 0 0 GG 7.810904 26 0 705 0 KEEP - Crygd NO B[a]P_2 chr1 71666055 71666055 C A exonic Fn1 synonymous SNV NM_001276408:c.G3417T:p.V1139V exonic Fn1 synonymous SNV uc007bju.1:c.G3417T:p.V1139V exonic ENSMUSG00000026193 synonymous SNV ENSMUST00000055226:c.G3417T:p.V1139V 1qC3 NA NA chr1 71666055 AGAxACA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 105 0 0 35.318709 0.368421 0.02 -0.333211 24 14 672 395 60 60 0 0 CC 16.844991 56 0 1580 0 KEEP - Fn1 YES B[a]P_2 chr1 74500573 74500573 C A exonic Usp37 nonsynonymous SNV NM_176972:c.G2128T:p.A710S exonic Usp37 nonsynonymous SNV uc007bmc.2:c.G1846T:p.A616S exonic ENSMUSG00000033364 nonsynonymous SNV ENSMUST00000055335:c.G2062T:p.A688S 1qC3 NA NA chr1 74500573 CTGxCAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 76 0 0 81.346372 0.736842 0.02 -0.333117 10 28 270 775 60 60 0 0 CC 9.023555 30 0 834 0 KEEP - Usp37 YES B[a]P_2 chr1 83000350 83000350 T G intergenic "Agfg1(dist=107500),Slc19a3(dist=8748)" NA NA intergenic "Agfg1(dist=107500),Slc19a3(dist=8748)" NA NA intergenic "ENSMUSG00000026159(dist=107500),ENSMUSG00000038496(dist=8748)" NA NA 1qC5 "Score=0.965761;Name=No.280,chr1:190795045" NA chr1 83000350 ATCxTAT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 222 0 0 123.638312 0.590361 0.02 1.065951 34 49 967 1247 60 60 0 0 TT 31.274594 104 0 2918 0 KEEP NA Agfg1 NO B[a]P_2 chr1 88061393 88061393 G T exonic Armc9 synonymous SNV NM_027456:c.G474T:p.P158P exonic Armc9 synonymous SNV uc007bvj.1:c.G474T:p.P158P exonic ENSMUSG00000062590 synonymous SNV ENSMUST00000027434:c.G474T:p.P158P 1qC5 NA NA chr1 88061393 TCCxATG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 113 0 0 62.682862 0.733333 0.02 -0.262646 8 22 224 598 60 60 0 0 GG 20.131385 67 0 1758 0 KEEP + Armc9 YES B[a]P_2 chr1 90131624 90131624 A T exonic Mroh2a nonsynonymous SNV NM_001281466:c.A1031T:p.E344V exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A1040T:p.E347V exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A1031T:p.E344V 1qD NA NA chr1 90131624 CAGxGTT A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 643 1 0 27.222711 0.093168 0.02 6.020678 146 15 4175 417 60 60 0 0 AA 84.477701 281 0 7805 0 KEEP + Mroh2a NO B[a]P_2 chr1 94841785 94841785 G A exonic Capn10 nonsynonymous SNV NM_011796:c.G1655A:p.R552H exonic Capn10 nonsynonymous SNV uc007cby.1:c.G1655A:p.R552H exonic ENSMUSG00000026270 nonsynonymous SNV ENSMUST00000027488:c.G1655A:p.R552H 1qD NA NA chr1 94841785 TCCxTAT G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 118 3 0 27.23498 0.255319 0.02 -0.420719 35 12 906 331 60 60 0 0 GG 15.326821 51 0 1292 0 KEEP - Capn10 NO B[a]P_2 chr2 103580048 103580048 T A splicing Nat10(NM_153126:exon13:c.1108-2A>T) NA NA splicing "Nat10(uc008liy.1:exon13:c.1108-2A>T,uc008liz.1:exon13:c.1108-2A>T)" NA NA splicing ENSMUSG00000027185(ENSMUST00000028608:exon13:c.1108-2A>T) NA NA 2qE2 NA NA chr2 103580048 TACxGTG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 52 0 0 21.798986 0.5 0.02 -0.149083 8 8 225 228 60 60 0 0 TT 8.421782 28 0 775 0 KEEP - Nat10 NO B[a]P_2 chr2 111068421 111068421 C A exonic 4930430A15Rik synonymous SNV NM_026248:c.G342T:p.T114T exonic 4930430A15Rik synonymous SNV uc008lnb.2:c.G342T:p.T114T exonic ENSMUSG00000027157 synonymous SNV ENSMUST00000028577:c.G342T:p.T114T 2qE3 NA NA chr2 111068421 AGGxGTG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 49 0 0 17.447085 0.411765 0.02 -0.148656 10 7 235 191 60 60 0 0 CC 7.515967 25 0 656 0 KEEP - 4930430A15Rik YES B[a]P_2 chr2 111097653 111097653 G T exonic Olfr1276 nonsynonymous SNV NM_146395:c.G380T:p.C127F exonic Olfr1276 nonsynonymous SNV uc008lnd.1:c.G380T:p.C127F exonic ENSMUSG00000063844 nonsynonymous SNV ENSMUST00000073322:c.G380T:p.C127F 2qE3 NA NA chr2 111097653 TATxCAA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 111 0 0 63.711985 0.48 0.02 -0.438452 26 24 733 673 60 60 0 0 GG 15.641471 52 0 1460 0 KEEP + Olfr1276 YES B[a]P_2 chr2 111109880 111109880 G T exonic Olfr1277 nonsynonymous SNV NM_146396:c.C643A:p.L215M exonic Olfr1277 nonsynonymous SNV uc008lne.1:c.C643A:p.L215M exonic ENSMUSG00000074965 nonsynonymous SNV ENSMUST00000099619:c.C643A:p.L215M 2qE3 NA NA chr2 111109880 CCAxCAA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 74 2 0 7.820168 0.121212 0.02 -0.289393 29 4 825 112 60 60 0 0 GG 9.024338 30 0 849 0 KEEP - Olfr1277 YES B[a]P_2 chr2 118586384 118586384 C G exonic A430105I19Rik nonsynonymous SNV NM_001001982:c.G403C:p.A135P exonic A430105I19Rik nonsynonymous SNV uc008lsn.1:c.G403C:p.A135P exonic ENSMUSG00000045838 nonsynonymous SNV ENSMUST00000059997:c.G403C:p.A135P 2qE5 NA NA chr2 118586384 GCGxCCT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 76 0 0 42.689893 0.432432 0.02 -0.323095 21 16 564 460 60 60 0 0 CC 8.421253 28 0 770 0 KEEP - A430105I19Rik NO B[a]P_2 chr2 124490286 124490286 C T exonic Sema6d synonymous SNV NM_172537:c.C2277T:p.H759H exonic Sema6d synonymous SNV uc008mbo.1:c.C2277T:p.H759H exonic ENSMUSG00000027200 synonymous SNV ENSMUST00000051419:c.C2277T:p.H759H 2qF1 NA NA chr2 124490286 TCAxGGG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 278 0 0 148.88612 0.518182 0.02 2.52474 53 57 1351 1548 60 60 0 0 CC 36.882416 123 0 3034 0 KEEP + Sema6d NO B[a]P_2 chr2 124894698 124894698 G T intronic Slc24a5 NA NA intronic Slc24a5 NA NA intronic ENSMUSG00000035183 NA NA 2qF1 NA NA chr2 124894698 GCCxGGA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 138 1 0 97.12139 0.514286 0.02 1.278633 34 36 893 1010 60 60 0 0 GG 13.956056 56 1 1461 27 KEEP + Slc24a5 YES B[a]P_2 chr2 126430095 126430095 G T exonic Hdc nonsynonymous SNV NM_001282085:c.C479A:p.S160Y exonic Hdc nonsynonymous SNV uc008mdr.1:c.C479A:p.S160Y exonic ENSMUSG00000027360 nonsynonymous SNV ENSMUST00000028838:c.C479A:p.S160Y 2qF1 NA NA chr2 126430095 GTGxATT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835598 0.835716 0.999859 65 1 0 41.610746 0.459459 0.02 -0.32432 20 17 571 446 60 60 0 0 GG 5.41496 18 0 516 0 KEEP - Hdc YES B[a]P_2 chr2 127191813 127191813 C A UTR3 Adra2b NA NA UTR3 Adra2b NA NA UTR3 ENSMUSG00000058620 NA NA 2qF1 NA NA chr2 127191813 AGCxTTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 93 0 0 57.262247 0.478261 0.02 -0.403375 24 22 679 606 60 60 0 0 CC 11.408037 38 0 1044 0 KEEP + Adra2b YES B[a]P_2 chr2 128418577 128418577 A C intergenic "Gm14005(dist=163490),Anapc1(dist=17242)" NA NA intergenic "Gm14005(dist=163490),Anapc1(dist=17242)" NA NA intronic ENSMUSG00000074812 NA NA 2qF1 NA NA chr2 128418577 CCAxGTG A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 180 2 0 40.134232 0.253333 0.02 0.939705 56 19 1589 495 60 60 0 0 AA 22.258734 74 0 2068 0 KEEP NA Gm14005 NO B[a]P_2 chr2 130389677 130389677 G C exonic Mrps26 nonsynonymous SNV NM_207207:c.G163C:p.V55L exonic Mrps26 nonsynonymous SNV uc008mjf.1:c.G163C:p.V55L exonic ENSMUSG00000037740 nonsynonymous SNV ENSMUST00000145614:c.G163C:p.V55L 2qF1 NA NA chr2 130389677 TTCxTGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 186 1 0 123.863056 0.464646 0.02 0.925769 53 46 1314 1316 60 60 0 0 GG 19.520517 65 0 1640 0 KEEP + Mrps26 NO B[a]P_2 chr2 130510223 130510223 G A exonic Slc4a11 stopgain SNV NM_001081162:c.C2536T:p.R846X exonic Slc4a11 stopgain SNV uc008mjv.1:c.C2536T:p.R846X exonic ENSMUSG00000074796 stopgain SNV ENSMUST00000099362:c.C2536T:p.R846X 2qF1 NA NA chr2 130510223 TTCxGGG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 143 0 0 25.914857 0.171429 0.02 1.163055 58 12 1478 341 60 60 0 0 GG 15.619995 52 0 1329 0 KEEP - Slc4a11 NO B[a]P_2 chr2 130648128 130648128 G C intronic 4930402H24Rik NA NA intronic 4930402H24Rik NA NA intronic ENSMUSG00000027309 NA NA 2qF1 NA NA chr2 130648128 CAAxACT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 75 0 0 14.107126 0.170732 0.02 -0.359522 34 7 969 189 60 60 0 0 GG 9.025256 30 0 867 0 KEEP - 4930402H24Rik NO B[a]P_2 chr2 14140725 14140725 C T exonic Tmem236 stopgain SNV NM_001081310:c.C697T:p.R233X exonic Fam23a stopgain SNV uc008ikj.1:c.C697T:p.R233X exonic ENSMUSG00000061531 stopgain SNV ENSMUST00000077517:c.C697T:p.R233X 2qA2 NA NA chr2 14140725 CTGxGAA C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 138 0 0 94.996303 0.5 0.02 1.047529 37 37 948 997 60 60 0 0 CC 15.623264 52 0 1295 0 KEEP + Tmem236 NO B[a]P_2 chr2 153709277 153709277 G T intronic Bpifb2 NA NA intronic Bpil1 NA NA intronic ENSMUSG00000027481 NA NA 2qH1 NA NA chr2 153709277 ACAxCTT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 205 0 0 105.068333 0.540541 0.02 1.144981 34 40 957 1082 60 60 0 0 GG 29.162988 97 0 2739 0 KEEP + Bpifb2 YES B[a]P_2 chr2 153989280 153989280 C A exonic Bpifa5 synonymous SNV NM_025990:c.C45A:p.A15A exonic 2310021H06Rik synonymous SNV uc008niv.2:c.C45A:p.A15A exonic ENSMUSG00000027484 synonymous SNV ENSMUST00000028986:c.C45A:p.A15A 2qH1 NA NA chr2 153989280 GGCxCAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.999859 52 0 0 30.718641 0.428571 0.02 -0.245544 16 12 458 333 60 60 0 0 CC 5.414487 18 0 506 0 KEEP + Bpifa5 YES B[a]P_2 chr2 155375017 155375017 G T exonic Acss2 nonsynonymous SNV NM_019811:c.G465T:p.Q155H exonic Acss2 nonsynonymous SNV uc008nkt.1:c.G465T:p.Q155H exonic ENSMUSG00000027605 nonsynonymous SNV ENSMUST00000029135:c.G465T:p.Q155H 2qH1 NA NA chr2 155375017 ACAxGGT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.689777 0.693668 0.994391 44 0 0 38.917045 0.5 0.02 -0.263016 15 15 420 408 60 60 0 0 GG 3.910473 13 0 366 0 KEEP + Acss2 YES B[a]P_2 chr2 155531360 155531360 T G intronic Edem2 NA NA intronic Edem2 NA NA intronic ENSMUSG00000038312 NA NA 2qH1 NA NA chr2 155531360 CACxTCC T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 89 0 0 41.995727 0.545455 0.02 -0.289173 15 18 423 433 60 60 0 0 TT 13.234518 44 0 1225 0 KEEP - Edem2 NO B[a]P_2 chr2 155895146 155895146 G T exonic Spag4 nonsynonymous SNV NM_139151:c.G1264T:p.A422S exonic Spag4 nonsynonymous SNV uc008nmc.1:c.G664T:p.A222S exonic ENSMUSG00000038180 nonsynonymous SNV ENSMUST00000038860:c.G1264T:p.A422S 2qH1 NA NA chr2 155895146 CGTxCTC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 201 0 0 111.85575 0.461538 0.02 0.99555 49 42 1378 1191 60 60 0 0 GG 26.469409 88 0 2457 0 KEEP + Spag4 YES B[a]P_2 chr2 155998642 155998642 C T exonic Rbm39 nonsynonymous SNV NM_133242:c.G218A:p.R73Q exonic Rbm39 nonsynonymous SNV uc008nmq.1:c.G218A:p.R73Q exonic ENSMUSG00000027620 nonsynonymous SNV ENSMUST00000029149:c.G218A:p.R73Q 2qH1 NA NA chr2 155998642 CTTxGTT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 116 0 0 65.841313 0.462963 0.02 1.221911 29 25 716 701 60 60 0 0 CC 15.915254 53 0 1251 0 KEEP - Rbm39 NO B[a]P_2 chr2 156138228 156138228 C G UTR5 Cnbd2 NA NA UTR5 4921517L17Rik NA NA UTR5 ENSMUSG00000038085 NA NA 2qH1 NA NA chr2 156138228 AAGxCCA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 104 0 0 91.764673 0.589286 0.02 1.40114 23 33 644 925 60 60 0 0 CC 11.729399 39 0 1071 0 KEEP - Cnbd2 NO B[a]P_2 chr2 156865759 156865759 G C exonic 9830001H06Rik nonsynonymous SNV NM_001164663:c.C2108G:p.A703G exonic 9830001H06Rik nonsynonymous SNV uc008nol.2:c.C2108G:p.A703G exonic ENSMUSG00000055485 nonsynonymous SNV ENSMUST00000069098:c.C2108G:p.A703G 2qH1 NA NA chr2 156865759 TTGxCAT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 114 0 0 63.05925 0.461538 0.02 1.328784 28 24 791 672 60 60 0 0 GG 14.738449 49 0 1363 0 KEEP - 9830001H06Rik NO B[a]P_2 chr2 156914929 156914929 G T exonic Tldc2 nonsynonymous SNV NM_001177439:c.G250T:p.G84C exonic Gm1332 nonsynonymous SNV uc012chx.1:c.G250T:p.G84C exonic ENSMUSG00000074628 nonsynonymous SNV ENSMUST00000099140:c.G208T:p.G70C 2qH1 NA NA chr2 156914929 GATxGCT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 221 0 0 30.711253 0.15 0.02 0.818243 85 15 2458 419 60 60 0 0 GG 29.26804 100 1 2860 7 KEEP + Tldc2 YES B[a]P_2 chr2 164296560 164296560 G T exonic Trp53tg5 nonsynonymous SNV NM_001271575:c.C694A:p.R232S exonic Trp53tg5 nonsynonymous SNV uc008nuv.1:c.C694A:p.R232S exonic ENSMUSG00000017720 nonsynonymous SNV ENSMUST00000017864:c.C694A:p.R232S 2qH3 NA NA chr2 164296560 AACxGGT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 142 0 0 79.561529 0.441176 0.02 1.197672 38 30 933 855 60 60 0 0 GG 15.921602 53 0 1308 0 KEEP - Trp53tg5 YES B[a]P_2 chr2 164815759 164815759 G T exonic Slc12a5 synonymous SNV NM_020333:c.G2028T:p.V676V exonic Slc12a5 synonymous SNV uc008nwu.2:c.G2028T:p.V676V exonic ENSMUSG00000017740 synonymous SNV ENSMUST00000017884:c.G2028T:p.V676V 2qH3 NA NA chr2 164815759 GGTxCTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780989 0.78106 0.999909 66 0 0 37.174765 0.411765 0.02 -0.298169 20 14 567 405 60 60 0 0 GG 7.218907 24 0 678 0 KEEP + Slc12a5 YES B[a]P_2 chr2 165255742 165255742 A T exonic Slc13a3 nonsynonymous SNV NM_054055:c.T880A:p.W294R exonic Slc13a3 nonsynonymous SNV uc008nxs.1:c.T880A:p.W294R exonic ENSMUSG00000018459 nonsynonymous SNV ENSMUST00000029208:c.T880A:p.W294R 2qH3 NA NA chr2 165255742 TCCxGAG A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 61 2 0 37.646496 0.5 0.02 -0.245539 14 14 401 394 60 60 0 0 AA 7.518945 25 0 692 0 KEEP - Slc13a3 NO B[a]P_2 chr2 166399594 166399594 C A intronic Prex1 NA NA intronic Prex1 NA NA intronic ENSMUSG00000039621 NA NA 2qH3 NA NA chr2 166399594 ACTxGGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 117 0 0 69.626804 0.509434 0.02 1.329009 26 27 714 727 60 60 0 0 CC 12.930046 43 0 1170 0 KEEP - Prex1 YES B[a]P_2 chr2 166421827 166421827 G A exonic Prex1 nonsynonymous SNV NM_177782:c.C1682T:p.A561V exonic Prex1 nonsynonymous SNV uc008nyn.1:c.C1682T:p.A561V exonic ENSMUSG00000039621 nonsynonymous SNV ENSMUST00000099080:c.C1172T:p.A391V 2qH3 NA NA chr2 166421827 AGCxCCA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 134 0 0 77.642681 0.508475 0.02 1.276515 29 30 731 811 60 60 0 0 GG 16.759404 56 0 1392 0 KEEP - Prex1 NO B[a]P_2 chr2 168348862 168348862 G C exonic Nfatc2 nonsynonymous SNV NM_001037177:c.C1731G:p.H577Q exonic Nfatc2 nonsynonymous SNV uc012cjt.1:c.C381G:p.H127Q exonic ENSMUSG00000027544 nonsynonymous SNV ENSMUST00000109186:c.C381G:p.H127Q 2qH3 NA NA chr2 168348862 CTCxTGG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 174 0 0 97.490449 0.425287 0.02 1.12945 50 37 1311 1056 60 60 0 0 GG 24.053918 80 0 2119 0 KEEP - Nfatc2 NO B[a]P_2 chr2 172704930 172704930 T G exonic Bmp7 nonsynonymous SNV NM_007557:c.A852C:p.E284D exonic Bmp7 nonsynonymous SNV uc008odb.1:c.A852C:p.E284D exonic ENSMUSG00000008999 nonsynonymous SNV ENSMUST00000009143:c.A852C:p.E284D 2qH3 NA NA chr2 172704930 GACxTCC T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 211 0 0 72.442504 0.336735 0.02 0.836074 65 33 1844 839 60 60 0 0 TT 26.16721 87 0 2415 0 KEEP - Bmp7 NO B[a]P_2 chr2 179664143 179664143 A T intronic Taf4a NA NA intronic Taf4a NA NA intronic ENSMUSG00000039117 NA NA 2qH4 NA NA chr2 179664143 GCCxGCA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967423 0.967425 0.999998 98 0 0 63.742458 0.470588 0.02 1.239466 27 24 758 676 60 60 0 0 AA 9.92303 33 0 904 0 KEEP - Taf4a NO B[a]P_2 chr2 179992912 179992912 G A intronic Rps21 NA NA intronic Rps21 NA NA intronic ENSMUSG00000039001 NA NA 2qH4 NA NA chr2 179992912 TCAxGTA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 118 0 0 64.394799 0.5 0.02 -0.420937 24 24 692 674 60 60 0 0 GG 16.545032 55 0 1582 0 KEEP + Rps21 NO B[a]P_2 chr2 180816129 180816129 G C exonic Kcnq2 nonsynonymous SNV NM_010611:c.C2242G:p.R748G exonic Kcnq2 nonsynonymous SNV uc008okx.1:c.C1633G:p.R545G exonic ENSMUSG00000016346 nonsynonymous SNV ENSMUST00000103050:c.C2158G:p.R720G 2qH4 NA NA chr2 180816129 ACCxCTC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 185 1 0 88.777544 0.376344 0.02 0.935166 58 35 1485 988 60 60 0 0 GG 19.775671 66 0 1694 0 KEEP - Kcnq2 NO B[a]P_2 chr2 180884665 180884665 G T intronic Eef1a2 NA NA intronic Eef1a2 NA NA intronic ENSMUSG00000016349 NA NA 2qH4 NA NA chr2 180884665 GATxGCA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717214 0.717315 0.999859 54 0 0 46.637718 0.548387 0.02 -0.271851 14 17 395 478 60 60 0 0 GG 5.414296 18 0 503 0 KEEP - Eef1a2 YES B[a]P_2 chr2 21748901 21748901 A G exonic Gpr158 nonsynonymous SNV NM_001004761:c.A3184G:p.K1062E exonic Gpr158 nonsynonymous SNV uc008inf.1:c.A3184G:p.K1062E exonic ENSMUSG00000045967 nonsynonymous SNV ENSMUST00000055946:c.A3184G:p.K1062E 2qA3 NA NA chr2 21748901 GACxAGA A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 90 0 0 64.812857 0.581395 0.02 -0.376959 18 25 503 656 60 60 0 0 AA 12.031041 40 0 1104 0 KEEP + Gpr158 NO B[a]P_2 chr2 25078336 25078336 C G exonic Tubb4b nonsynonymous SNV NM_146116:c.G830C:p.G277A exonic Tubb2c nonsynonymous SNV uc008iqs.2:c.G830C:p.G277A exonic ENSMUSG00000036752 nonsynonymous SNV ENSMUST00000043584:c.G830C:p.G277A 2qA3 "Score=0.9819;Name=No.78300,chr5:7179300" NA chr2 25078336 CTGxCCC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 56 0 1 19.911204 0.32 0.02 -0.219237 17 8 480 229 60 46 0 0 CC 6.918357 23 0 644 0 KEEP - Tubb4b NO B[a]P_2 chr2 26326828 26326828 G A intronic Notch1 NA NA intronic Notch1 NA NA intronic ENSMUSG00000026923 NA NA 2qA3 NA NA chr2 26326828 TCTxAGG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.738068 0.739671 0.997832 50 0 0 56.044189 0.625 0.02 -0.280573 12 20 335 557 60 60 0 0 GG 4.812986 16 0 454 0 KEEP - Notch1 NO B[a]P_2 chr2 32068759 32068759 C A exonic Prrc2b nonsynonymous SNV NM_001159634:c.C2728A:p.Q910K exonic Prrc2b nonsynonymous SNV uc008jen.2:c.C2728A:p.Q910K exonic ENSMUSG00000039262 nonsynonymous SNV ENSMUST00000137551:c.C712A:p.Q238K 2qB NA NA chr2 32068759 CGAxAGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693577 0.693668 0.999869 52 0 0 7.10218 0.133333 0.02 -0.263027 26 4 722 103 60 60 0 0 CC 6.300503 21 0 564 0 KEEP + Prrc2b YES B[a]P_2 chr2 33420148 33420148 G T UTR3 Lmx1b NA NA UTR3 Lmx1b NA NA UTR3 ENSMUSG00000038765 NA NA 2qB NA NA chr2 33420148 CCGxCTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138789 0.139832 0.99254 23 0 0 6.701334 0.25 0.02 -0.105234 9 3 259 82 60 60 0 0 GG 2.707118 9 0 251 0 KEEP - Lmx1b YES B[a]P_2 chr2 37075792 37075792 G T exonic Olfr366 nonsynonymous SNV NM_001005569:c.G782T:p.R261L exonic Olfr366 nonsynonymous SNV uc008jmm.1:c.G782T:p.R261L exonic ENSMUSG00000068947 nonsynonymous SNV ENSMUST00000091001:c.G782T:p.R261L 2qB NA NA chr2 37075792 TTCxCCC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 157 1 0 120.899373 0.544304 0.02 1.101468 36 43 869 1240 60 60 0 0 GG 16.826385 56 0 1404 0 KEEP + Olfr366 YES B[a]P_2 chr2 37496451 37496451 C G exonic Strbp nonsynonymous SNV NM_009261:c.G310C:p.E104Q exonic Strbp nonsynonymous SNV uc008jnc.2:c.G310C:p.E104Q exonic ENSMUSG00000026915 nonsynonymous SNV ENSMUST00000028279:c.G310C:p.E104Q 2qB NA NA chr2 37496451 GCTxCAG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 116 2 0 58.390289 0.410714 0.02 1.401261 33 23 939 639 60 60 0 0 CC 15.341408 51 0 1448 0 KEEP - Strbp NO B[a]P_2 chr2 43374116 43374116 A G intergenic "Lrp1b(dist=864998),Kynu(dist=36733)" NA NA intergenic "AK076935(dist=386967),Kynu(dist=36733)" NA NA ncRNA_exonic ENSMUSG00000080994 NA NA 2qB "Score=0.990749;Name=No.81279,chrY_random:25801565" NA chr2 43374116 TTCxGTG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 425 5 76 30.041971 0.186813 0.02 0.99663 74 17 2098 409 60 46 0 0 AA 78.448456 261 0 7116 0 KEEP NA Lrp1b NO B[a]P_2 chr2 4902284 4902284 C T exonic Ucma nonsynonymous SNV NM_026754:c.C155T:p.A52V exonic Ucma nonsynonymous SNV uc008ife.2:c.C155T:p.A52V exonic ENSMUSG00000026668 nonsynonymous SNV ENSMUST00000027978:c.C155T:p.A52V 2qA1 NA NA chr2 4902284 CAGxGGA C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612341 0.612407 0.999892 65 0 0 27.221453 0.407407 0.02 -0.23671 16 11 428 299 60 60 0 0 CC 6.853627 23 0 594 0 KEEP + Ucma NO B[a]P_2 chr2 52932666 52932666 T A intronic Fmnl2 NA NA intronic Fmnl2 NA NA intronic ENSMUSG00000036053 NA NA 2qC1.1 NA NA chr2 52932666 TGTxTTG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 64 0 0 26.418873 0.407407 0.02 -0.236742 16 11 453 291 60 60 0 0 TT 9.023473 30 0 834 0 KEEP + Fmnl2 NO B[a]P_2 chr2 53018634 53018634 C A exonic Prpf40a stopgain SNV NM_018785:c.G616T:p.E206X exonic Prpf40a stopgain SNV uc008jrk.1:c.G616T:p.E206X exonic ENSMUSG00000061136 stopgain SNV ENSMUST00000076313:c.G616T:p.E206X 2qC1.1 NA NA chr2 53018634 ACTxCTT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 58 0 0 25.458503 0.47619 0.02 -0.184102 11 10 299 270 60 60 0 0 CC 8.943218 30 0 795 0 KEEP - Prpf40a YES B[a]P_2 chr2 53937807 53937807 G T UTR5 Rprm NA NA UTR5 Rprm NA NA UTR5 ENSMUSG00000075334 NA NA 2qC1.1 NA NA chr2 53937807 AGCxCTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 210 1 0 149.240664 0.5 0.02 2.598303 56 56 1345 1562 60 60 0 0 GG 23.94769 80 0 1881 0 KEEP - Rprm YES B[a]P_2 chr2 5744247 5744247 G C intronic Cdc123 NA NA intronic Cdc123 NA NA intronic ENSMUSG00000039128 NA NA 2qA1 NA NA chr2 5744247 CTAxAGA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 58 0 0 9.169077 0.222222 0.02 -0.157839 14 4 396 114 60 60 0 0 GG 10.22803 34 0 971 0 KEEP - Cdc123 NO B[a]P_2 chr2 66564245 66564245 A C exonic Scn7a nonsynonymous SNV NM_009135:c.T1052G:p.M351R exonic Scn7a nonsynonymous SNV uc008jxg.1:c.T647G:p.M216R exonic ENSMUSG00000034810 nonsynonymous SNV ENSMUST00000042792:c.T1052G:p.M351R 2qC1.3 NA NA chr2 66564245 GTCxTCA A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.999859 49 0 0 30.118634 0.428571 0.02 -0.245466 16 12 430 327 60 60 0 0 AA 5.397551 18 0 468 0 KEEP - Scn7a NO B[a]P_2 chr2 68546998 68546998 G C intronic 4932414N04Rik NA NA intronic 4932414N04Rik NA NA intronic ENSMUSG00000048204 NA NA 2qC2 NA NA chr2 68546998 TGTxAGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999999 75 0 0 34.644941 0.419355 0.02 -0.271875 18 13 523 376 60 60 0 0 GG 10.52904 35 0 1006 0 KEEP + 4932414N04Rik NO B[a]P_2 chr2 73275362 73275362 G A exonic Wipf1 stopgain SNV NM_153138:c.C748T:p.R250X exonic Wipf1 stopgain SNV uc008kcu.1:c.C748T:p.R250X exonic ENSMUSG00000075284 stopgain SNV ENSMUST00000094681:c.C748T:p.R250X 2qC3 NA NA chr2 73275362 CTCxGCT G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984158 0.984161 0.999997 90 0 0 61.939623 0.421053 0.02 1.187836 33 24 793 673 60 60 0 0 GG 9.010279 30 0 717 0 KEEP - Wipf1 NO B[a]P_2 chr2 76575719 76575719 G C exonic Ttn stopgain SNV NM_028004:c.C57905G:p.S19302X exonic Ttn stopgain SNV uc008kfo.1:c.C57905G:p.S19302X exonic ENSMUSG00000051747 stopgain SNV ENSMUST00000011934:c.C57905G:p.S19302X 2qC3 NA NA chr2 76575719 GTTxAGA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 216 1 0 107.96224 0.41 0.02 1.015244 59 41 1692 1178 60 60 0 0 GG 26.773751 89 0 2566 0 KEEP - Ttn NO B[a]P_2 chr2 76711954 76711954 T C exonic Ttn nonsynonymous SNV NM_011652:c.A25105G:p.I8369V exonic Ttn nonsynonymous SNV uc008kfn.1:c.A25105G:p.I8369V exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000148747:c.A6832G:p.I2278V 2qC3 NA NA chr2 76711954 GAAxGGG T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 201 0 0 39.122098 0.210526 0.02 0.764446 75 20 2070 508 60 60 0 0 TT 24.658434 82 0 2189 0 KEEP - Ttn NO B[a]P_2 chr2 76722834 76722834 A C exonic Ttn synonymous SNV NM_011652:c.T21288G:p.A7096A exonic Ttn synonymous SNV uc008kfn.1:c.T21288G:p.A7096A exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000148747:c.T3015G:p.A1005A 2qC3 NA NA chr2 76722834 AGAxGCA A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 245 0 0 73.397941 0.290598 0.02 2.364579 83 34 2356 878 60 60 0 0 AA 28.876557 96 0 2690 0 KEEP - Ttn NO B[a]P_2 chr2 76877480 76877480 C A intronic Ccdc141 NA NA intronic Ccdc141 NA NA intronic ENSMUSG00000044033 NA NA 2qC3 NA NA chr2 76877480 TTTxTCA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 197 4 0 124.207894 0.475728 0.02 2.389398 54 49 1548 1318 60 60 0 0 CC 20.745593 69 0 1968 0 KEEP - Ccdc141 YES B[a]P_2 chr2 85240189 85240189 T G exonic Olfr992 nonsynonymous SNV NM_146865:c.A500C:p.N167T exonic Olfr992 nonsynonymous SNV uc008kkf.1:c.A500C:p.N167T exonic ENSMUSG00000075221 nonsynonymous SNV ENSMUST00000099927:c.A500C:p.N167T 2qD NA NA chr2 85240189 AAGxTAG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 57 0 0 10.255945 0.2 0.02 -0.219199 20 5 552 133 60 60 0 0 TT 9.022433 30 0 818 0 KEEP - Olfr992 NO B[a]P_2 chr2 86253996 86253996 A C exonic Olfr1061 nonsynonymous SNV NM_207134:c.T212G:p.L71R exonic Olfr1061 nonsynonymous SNV uc008kmh.1:c.T212G:p.L71R exonic ENSMUSG00000075185 nonsynonymous SNV ENSMUST00000099889:c.T212G:p.L71R 2qD "Score=0.939749;Name=No.75239,chr2:86293464" NA chr2 86253996 CCAxGGT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 171 2 0 23.503333 0.173333 0.02 0.939835 62 13 1740 323 60 60 0 0 AA 23.160223 77 0 2143 0 KEEP - Olfr1061 NO B[a]P_2 chr2 86263669 86263669 G T exonic Olfr1062 nonsynonymous SNV NM_147078:c.C163A:p.L55M exonic Olfr1062 nonsynonymous SNV uc008kmi.1:c.C163A:p.L55M exonic ENSMUSG00000090059 nonsynonymous SNV ENSMUST00000105213:c.C163A:p.L55M 2qD "Score=0.946597;Name=No.75238,chr2:86211011" NA chr2 86263669 GCAxGCG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 255 0 18 155.888522 0.491803 0.02 2.320646 62 60 1771 1640 60 60 0 0 GG 30.664935 102 0 2876 0 KEEP - Olfr1062 YES B[a]P_2 chr2 87485351 87485351 A G exonic Olfr1133 synonymous SNV NM_146351:c.T928C:p.L310L exonic Olfr1133 synonymous SNV uc008koi.1:c.T928C:p.L310L exonic ENSMUSG00000075155 synonymous SNV ENSMUST00000099855:c.T928C:p.L310L 2qD NA NA chr2 87485351 ACAxGTT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 171 1 2 47.456689 0.285714 0.02 1.179699 50 20 1408 561 60 60 0 0 AA 22.555609 75 0 2093 0 KEEP - Olfr1133 NO B[a]P_2 chr2 87697748 87697748 A T exonic Olfr1151 nonsynonymous SNV NM_146638:c.A415T:p.M139L exonic Olfr1151 nonsynonymous SNV uc008kou.1:c.A415T:p.M139L exonic ENSMUSG00000047039 nonsynonymous SNV ENSMUST00000061081:c.A415T:p.M139L 2qD NA NA chr2 87697748 AGCxTGG A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999405 0.999407 0.999997 122 0 0 102.036957 0.463415 0.02 1.07446 44 38 1219 1085 60 60 0 0 AA 9.62322 32 0 862 0 KEEP + Olfr1151 NO B[a]P_2 chr2 88692943 88692943 A C exonic Olfr1204 nonsynonymous SNV NM_146463:c.A835C:p.M279L exonic Olfr1204 nonsynonymous SNV uc008kqk.1:c.A835C:p.M279L exonic ENSMUSG00000061798 nonsynonymous SNV ENSMUST00000078631:c.A835C:p.M279L 2qE1 NA NA chr2 88692943 CCTxTGT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 312 4 0 166.717942 0.452555 0.02 2.484707 75 62 1983 1781 60 60 0 0 AA 39.091795 130 0 3466 0 KEEP + Olfr1204 NO B[a]P_2 chr2 91470951 91470951 G C exonic F2 nonsynonymous SNV NM_010168:c.C595G:p.P199A exonic F2 nonsynonymous SNV uc008kwg.1:c.C595G:p.P199A exonic ENSMUSG00000027249 nonsynonymous SNV ENSMUST00000028681:c.C595G:p.P199A 2qE1 NA NA chr2 91470951 GAGxAGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.421506 0.423478 0.995343 40 0 0 33.693067 0.571429 0.02 -0.184165 9 12 264 342 60 60 0 0 GG 4.211522 14 0 399 0 KEEP - F2 NO B[a]P_2 chr3 100833440 100833440 G T upstream Cd101 NA NA upstream Cd101 NA NA UTR5 ENSMUSG00000086564 NA NA 3qF2.2 NA NA chr3 100833440 TTCxGGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 113 0 0 74.457136 0.735294 0.02 -0.297598 9 25 227 710 60 60 0 0 GG 18.642556 62 0 1679 0 KEEP NA Cd101 YES B[a]P_2 chr3 108198210 108198210 C A intronic Celsr2 NA NA intronic Celsr2 NA NA intronic ENSMUSG00000068740 NA NA 3qF3 NA NA chr3 108198210 CAAxACC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 172 0 0 107.710924 0.47191 0.02 0.916349 47 42 1251 1145 60 60 0 0 CC 17.137396 57 0 1512 0 KEEP - Celsr2 YES B[a]P_2 chr3 108756795 108756795 C G exonic Henmt1 nonsynonymous SNV NM_001078646:c.C344G:p.S115C exonic 4921515J06Rik nonsynonymous SNV uc008rab.1:c.C215G:p.S72C exonic ENSMUSG00000045662 nonsynonymous SNV ENSMUST00000106585:c.C215G:p.S72C 3qF3 NA NA chr3 108756795 GCTxTGT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 104 0 0 27.282118 0.244898 0.02 -0.438481 37 12 1065 334 60 60 0 0 CC 12.033235 40 0 1148 0 KEEP + Henmt1 NO B[a]P_2 chr3 129697264 129697264 G C exonic Sec24b nonsynonymous SNV NM_207209:c.C2504G:p.A835G exonic Sec24b nonsynonymous SNV uc008riu.1:c.C2282G:p.A761G exonic ENSMUSG00000001052 nonsynonymous SNV ENSMUST00000165873:c.C1715G:p.A572G 3qG3 NA NA chr3 129697264 AAAxCGA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899275 0.899314 0.999957 79 0 0 10.133148 0.119048 0.02 -0.368286 37 5 1041 144 60 60 0 0 GG 7.821218 26 0 738 0 KEEP - Sec24b NO B[a]P_2 chr3 134964631 134964631 C G intronic Bdh2 NA NA intronic Bdh2 NA NA intronic ENSMUSG00000028167 NA NA 3qG3 NA NA chr3 134964631 GCTxTTC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 127 0 0 143.666411 0.689189 0.02 1.342403 23 51 666 1393 60 60 0 0 CC 11.41826 38 0 1060 0 KEEP + Bdh2 NO B[a]P_2 chr3 135281736 135281736 A C intronic Nfkb1 NA NA intronic Nfkb1 NA NA intronic ENSMUSG00000028163 NA NA 3qG3 NA NA chr3 135281736 AGAxGCC A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 76 0 0 33.946135 0.4 0.02 -0.30689 21 14 587 375 60 60 0 0 AA 10.225325 34 0 941 0 KEEP - Nfkb1 NO B[a]P_2 chr3 137949869 137949869 G A exonic Adh1 nonsynonymous SNV NM_007409:c.G781A:p.G261R exonic Adh1 nonsynonymous SNV uc008rnf.1:c.G781A:p.G261R exonic ENSMUSG00000074207 nonsynonymous SNV ENSMUST00000004232:c.G781A:p.G261R 3qG3 NA NA chr3 137949869 GACxGAG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 146 0 0 53.948454 0.318841 0.02 1.188892 47 22 1198 622 60 60 0 0 GG 16.830529 56 0 1433 0 KEEP + Adh1 NO B[a]P_2 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 70 1 0 7.465857 0.117647 0.02 -0.306929 30 4 852 109 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO B[a]P_2 chr3 38880206 38880206 G A exonic Fat4 synonymous SNV NM_183221:c.G9084A:p.G3028G exonic Fat4 synonymous SNV uc008pbf.1:c.G9084A:p.G3028G exonic ENSMUSG00000046743 synonymous SNV ENSMUST00000061260:c.G9084A:p.G3028G 3qB NA NA chr3 38880206 TGGxAAC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 91 0 0 65.195566 0.5 0.02 -0.420934 24 24 684 682 60 60 0 0 GG 11.428944 38 0 1062 0 KEEP + Fat4 NO B[a]P_2 chr3 47034728 47034728 T G intergenic "Pabpc4l(dist=782865),Gm7977(dist=795206)" NA NA intergenic "Pabpc4l(dist=782865),DQ556350(dist=1043998)" NA NA intergenic "ENSMUSG00000088739(dist=30042),ENSMUSG00000037910(dist=1374926)" NA NA 3qC NA NA chr3 47034728 TCCxGGG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 236 0 0 127.573699 0.607595 0.02 1.18217 31 48 875 1277 60 60 0 0 TT 38.797788 129 0 3546 0 KEEP NA Pabpc4l NO B[a]P_2 chr3 54177707 54177707 G T exonic Postn nonsynonymous SNV NM_001198765:c.G1330T:p.D444Y exonic Postn nonsynonymous SNV uc008pfh.2:c.G1330T:p.D444Y exonic ENSMUSG00000027750 nonsynonymous SNV ENSMUST00000073012:c.G1330T:p.D444Y 3qC NA NA chr3 54177707 AGCxACC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 53 0 0 19.249436 0.307692 0.02 -0.227911 18 8 470 224 60 60 0 0 GG 6.90871 23 0 560 0 KEEP + Postn YES B[a]P_2 chr3 54519469 54519469 A G exonic Supt20 synonymous SNV NM_019995:c.A1440G:p.T480T exonic Fam48a synonymous SNV uc008pfl.1:c.A1440G:p.T480T exonic ENSMUSG00000027751 synonymous SNV ENSMUST00000029315:c.A1437G:p.T479T 3qC NA NA chr3 54519469 CACxGCA A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 375 4 0 105.699126 0.331169 0.02 4.130317 103 51 2912 1239 60 60 0 0 AA 48.118227 160 0 4392 0 KEEP + Supt20 NO B[a]P_2 chr3 55434052 55434052 C A intronic Nbea NA NA intronic Nbea NA NA intronic ENSMUSG00000027799 NA NA 3qC NA NA chr3 55434052 GCAxGGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851864 0.851984 0.99986 64 0 0 51.426879 0.5 0.02 -0.333143 19 19 488 538 60 60 0 0 CC 5.709194 19 0 483 0 KEEP - Nbea YES B[a]P_2 chr3 59022143 59022143 G A exonic P2ry12 nonsynonymous SNV NM_027571:c.C32T:p.A11V exonic P2ry12 nonsynonymous SNV uc008pis.2:c.C32T:p.A11V exonic ENSMUSG00000036353 nonsynonymous SNV ENSMUST00000170388:c.C32T:p.A11V 3qD NA NA chr3 59022143 TTGxCTG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.99986 54 0 0 51.2171 0.666667 0.02 -0.236766 9 18 257 501 60 60 0 0 GG 5.699258 19 0 508 0 KEEP + P2ry12 NO B[a]P_2 chr3 87606452 87606452 T A exonic Insrr synonymous SNV NM_011832:c.T789A:p.P263P exonic Insrr synonymous SNV uc008psx.2:c.T789A:p.P263P exonic ENSMUSG00000005640 synonymous SNV ENSMUST00000029711:c.T789A:p.P263P 3qF1 NA NA chr3 87606452 CCCxCCG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 298 2 0 223.661372 0.564626 0.02 2.10186 64 83 1780 2278 60 60 0 0 TT 33.683748 112 0 3083 0 KEEP + Insrr NO B[a]P_2 chr3 88369711 88369711 C G exonic Ubqln4 nonsynonymous SNV NM_033526:c.C1550G:p.A517G exonic Ubqln4 nonsynonymous SNV uc008pvr.1:c.C1550G:p.A517G exonic ENSMUSG00000008604 nonsynonymous SNV ENSMUST00000008748:c.C1550G:p.A517G 3qF1 NA NA chr3 88369711 CAGxCAC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 171 2 0 88.206221 0.432099 0.02 1.182277 46 35 1296 956 60 60 0 0 CC 19.250719 64 0 1789 0 KEEP + Ubqln4 NO B[a]P_2 chr3 89226149 89226149 G T exonic Shc1 nonsynonymous SNV NM_001113331:c.G377T:p.G126V exonic Shc1 nonsynonymous SNV uc008pzn.2:c.G377T:p.G126V exonic ENSMUSG00000042626 nonsynonymous SNV ENSMUST00000094378:c.G377T:p.G126V 3qF1 NA NA chr3 89226149 AAGxGGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 158 1 0 134.903472 0.609756 0.02 0.976313 32 50 901 1349 60 60 0 0 GG 16.541426 55 0 1512 0 KEEP + Shc1 YES B[a]P_2 chr3 89747640 89747640 C A exonic Atp8b2 nonsynonymous SNV NM_001081182:c.G2920T:p.G974W exonic Atp8b2 nonsynonymous SNV uc008qah.1:c.G2062T:p.G688W exonic ENSMUSG00000060671 nonsynonymous SNV ENSMUST00000166502:c.G40T:p.G14W 3qF1 NA NA chr3 89747640 CCCxATA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963773 0.963774 0.999999 95 0 0 69.85067 0.509804 0.02 1.248004 25 26 703 728 60 60 0 0 CC 10.528625 35 0 996 0 KEEP - Atp8b2 YES B[a]P_2 chr3 92190998 92190998 T G UTR3 Sprr2h NA NA ncRNA_exonic SPRR2H NA NA UTR3 ENSMUSG00000046259 NA NA 3qF1 NA NA chr3 92190998 TACxTCA T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 313 0 0 199.122539 0.525974 0.02 4.031112 73 81 2046 2068 60 60 0 0 TT 35.193302 117 0 3284 0 KEEP + Sprr2h NO B[a]P_2 chr3 93007306 93007306 A G exonic Flg2 synonymous SNV NM_001013804:c.A2718G:p.P906P exonic Flg2 synonymous SNV uc008qfe.1:c.A2715G:p.P905P exonic ENSMUSG00000049133 synonymous SNV ENSMUST00000098884:c.A2718G:p.P906P 3qF2.1 NA NA chr3 93007306 ACCxGAT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 86 0 0 37.017385 0.333333 0.02 -0.394617 30 15 854 423 60 60 0 0 AA 10.226938 34 0 949 0 KEEP + Flg2 NO B[a]P_2 chr3 93023584 93023584 C T exonic Flg2 synonymous SNV NM_001013804:c.C5874T:p.S1958S exonic Flg2 synonymous SNV uc008qfe.1:c.C5784T:p.S1928S exonic ENSMUSG00000049133 synonymous SNV ENSMUST00000098884:c.C5880T:p.S1960S 3qF2.1 NA NA chr3 93023584 GTCxAGT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 129 0 54 7.561337 0.105263 0.02 -0.333217 34 4 942 112 30 23 0 0 CC 12.657558 52 1 1465 28 KEEP + Flg2 NO B[a]P_2 chr3 96132409 96132409 C A intergenic "Fcgr1(dist=34517),Terc(dist=85951)" NA NA intergenic "Fcgr1(dist=34517),AK135774(dist=16801)" NA NA ncRNA_exonic ENSMUSG00000075978 NA NA 3qF2.1 NA NA chr3 96132409 TCAxCCA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 325 1 9 67.808207 0.144068 0.02 4.712229 202 34 5659 938 57 57 0 0 CC 16.125762 54 0 1420 0 KEEP NA Fcgr1 YES B[a]P_2 chr3 98656945 98656945 A T exonic Hsd3b1 nonsynonymous SNV NM_008293:c.T652A:p.F218I exonic Hsd3b1 nonsynonymous SNV uc008qqi.1:c.T652A:p.F218I exonic ENSMUSG00000027871 nonsynonymous SNV ENSMUST00000149768:c.T634A:p.F212I 3qF2.2 NA NA chr3 98656945 AGAxTTT A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 197 0 0 169.118187 0.512 0.02 2.294623 61 64 1664 1762 60 60 0 0 AA 16.847142 63 1 1704 19 KEEP - Hsd3b1 NO B[a]P_2 chr4 100114459 100114459 C A exonic Ror1 nonsynonymous SNV NM_013845:c.C2423A:p.P808Q exonic Ror1 nonsynonymous SNV uc008tvd.1:c.C2423A:p.P808Q exonic ENSMUSG00000035305 nonsynonymous SNV ENSMUST00000039630:c.C2423A:p.P808Q 4qC6 NA NA chr4 100114459 GCCxAGC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 3 0 170.675189 0.457746 0.02 2.136473 77 65 2179 1822 60 60 0 0 CC 37.298169 124 0 3489 0 KEEP + Ror1 YES B[a]P_2 chr4 101300681 101300681 C A exonic Dnajc6 nonsynonymous SNV NM_001164583:c.C2141A:p.P714Q exonic Dnajc6 nonsynonymous SNV uc008tvs.2:c.C2051A:p.P684Q exonic ENSMUSG00000028528 nonsynonymous SNV ENSMUST00000038207:c.C2051A:p.P684Q 4qC6 NA NA chr4 101300681 GCCxGAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490485 0.490544 0.999879 53 0 0 20.368487 0.347826 0.02 -0.201502 15 8 356 230 60 60 0 0 CC 6.612287 22 0 572 0 KEEP + Dnajc6 YES B[a]P_2 chr4 101455226 101455226 T A exonic Lepr nonsynonymous SNV NM_001122899:c.T2283A:p.D761E exonic Lepr nonsynonymous SNV uc008twa.1:c.T2283A:p.D761E exonic ENSMUSG00000057722 nonsynonymous SNV ENSMUST00000037552:c.T2283A:p.D761E 4qC6 NA NA chr4 101455226 TGAxGAT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612323 0.612407 0.999863 53 0 0 25.747865 0.384615 0.02 -0.227981 16 10 435 285 60 60 0 0 TT 6.013925 20 0 530 0 KEEP + Lepr NO B[a]P_2 chr4 104464403 104464403 A C exonic C8b nonsynonymous SNV NM_133882:c.A1106C:p.Y369S exonic C8b nonsynonymous SNV uc012dhv.1:c.A908C:p.Y303S exonic ENSMUSG00000029656 nonsynonymous SNV ENSMUST00000065072:c.A908C:p.Y303S 4qC6 NA NA chr4 104464403 ACTxCAC A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 165 0 0 32.171785 0.202899 0.02 1.188547 55 14 1477 406 60 60 0 0 AA 20.688512 74 1 1982 14 KEEP + C8b NO B[a]P_2 chr4 108299360 108299360 G C exonic Cc2d1b nonsynonymous SNV NM_177045:c.G1202C:p.R401P exonic Cc2d1b nonsynonymous SNV uc008ubm.1:c.G1046C:p.R349P exonic ENSMUSG00000028582 nonsynonymous SNV ENSMUST00000030320:c.G1202C:p.R401P 4qC7 NA NA chr4 108299360 CCCxGGC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 287 0 0 149.369448 0.476562 0.02 2.467394 67 61 1523 1587 60 60 0 0 GG 33.591623 112 0 2680 0 KEEP + Cc2d1b NO B[a]P_2 chr4 116274281 116274281 C A UTR3 Nasp NA NA UTR3 Nasp NA NA UTR3 ENSMUSG00000028693 NA NA 4qD1 NA NA chr4 116274281 GTAxAAA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 97 0 0 56.272658 0.5 0.02 -0.377053 21 21 570 589 60 60 0 0 CC 12.931757 43 0 1168 0 KEEP - Nasp YES B[a]P_2 chr4 11734652 11734652 G T exonic Cdh17 synonymous SNV NM_019753:c.G1869T:p.P623P exonic Cdh17 synonymous SNV uc008rzx.2:c.G1869T:p.P623P exonic ENSMUSG00000028217 synonymous SNV ENSMUST00000029871:c.G1869T:p.P623P 4qA1 NA NA chr4 11734652 TCCxCTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 64 0 0 25.151401 0.37037 0.02 -0.23641 17 10 420 281 60 60 0 0 GG 9.013578 30 0 756 0 KEEP + Cdh17 YES B[a]P_2 chr4 127937639 127937639 C G exonic Hmgb4 nonsynonymous SNV NM_027036:c.G379C:p.A127P exonic Hmgb4 nonsynonymous SNV uc008uva.1:c.G379C:p.A127P exonic ENSMUSG00000048686 nonsynonymous SNV ENSMUST00000053830:c.G379C:p.A127P 4qD2.2 NA NA chr4 127937639 CAGxAGC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 179 2 0 125.144553 0.5625 0.02 1.190649 35 45 999 1275 60 60 0 0 CC 24.663552 82 0 2270 0 KEEP - Hmgb4 NO B[a]P_2 chr4 128196422 128196422 C A exonic Csmd2 nonsynonymous SNV NM_001281955:c.C7762A:p.P2588T exonic Csmd2 nonsynonymous SNV uc008uvb.1:c.C4114A:p.P1372T exonic ENSMUSG00000028804 nonsynonymous SNV ENSMUST00000152206:c.C70A:p.P24T 4qD2.2 NA NA chr4 128196422 GTCxCCC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 181 0 0 108.883656 0.5 0.02 0.941444 43 43 1222 1143 60 60 0 0 CC 19.185027 64 0 1753 0 KEEP + Csmd2 YES B[a]P_2 chr4 128265456 128265456 G A exonic Zscan20 synonymous SNV NM_177758:c.C1656T:p.C552C exonic Zscan20 synonymous SNV uc008uvd.2:c.C1656T:p.C552C exonic ENSMUSG00000061894 synonymous SNV ENSMUST00000097877:c.C1656T:p.C552C 4qD2.2 NA NA chr4 128265456 CGGxCAG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999997 81 0 0 18.741361 0.1875 0.02 -0.420758 39 9 1075 245 60 60 0 0 GG 9.578709 32 0 857 0 KEEP - Zscan20 NO B[a]P_2 chr4 129316798 129316798 T C exonic Txlna synonymous SNV NM_001005506:c.A180G:p.K60K exonic Txlna synonymous SNV uc008uxx.2:c.A180G:p.K60K exonic ENSMUSG00000053841 nonsynonymous SNV ENSMUST00000106030:c.A158G:p.K53R 4qD2.2 NA NA chr4 129316798 TGCxTTA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 143 0 0 34.061795 0.208333 0.02 1.162198 57 15 1584 429 60 60 0 0 TT 15.940312 53 0 1465 0 KEEP - Txlna NO B[a]P_2 chr4 132476859 132476859 C A intronic Fam76a NA NA intronic Fam76a NA NA intronic ENSMUSG00000028878 NA NA 4qD2.3 NA NA chr4 132476859 CTTxCCT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851892 0.851984 0.999892 67 0 0 26.596756 0.324324 0.02 -0.324398 25 12 720 310 60 60 0 0 CC 6.911505 23 0 639 0 KEEP - Fam76a YES B[a]P_2 chr4 133871281 133871281 C G exonic Trim63 nonsynonymous SNV NM_001039048:c.C143G:p.A48G exonic Trim63 nonsynonymous SNV uc008ves.1:c.C143G:p.A48G exonic ENSMUSG00000028834 nonsynonymous SNV ENSMUST00000030638:c.C143G:p.A48G 4qD3 NA NA chr4 133871281 GTGxCAA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 61 1 0 32.798118 0.5 0.02 -0.210474 12 12 344 343 60 60 0 0 CC 9.621129 32 0 885 0 KEEP + Trim63 NO B[a]P_2 chr4 134305239 134305239 C A intronic Ldlrap1 NA NA intronic Ldlrap1 NA NA intronic ENSMUSG00000037295 NA NA 4qD3 NA NA chr4 134305239 CCAxAGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 162 0 0 67.256876 0.412698 0.02 1.14277 37 26 1051 734 60 60 0 0 CC 20.151306 67 0 1860 0 KEEP - Ldlrap1 YES B[a]P_2 chr4 135736418 135736418 C A exonic E2f2 synonymous SNV NM_177733:c.C510A:p.R170R exonic E2f2 synonymous SNV uc008vht.2:c.C510A:p.R170R exonic ENSMUSG00000018983 synonymous SNV ENSMUST00000061721:c.C510A:p.R170R 4qD3 NA NA chr4 135736418 GCGxATC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 82 0 0 36.908847 0.424242 0.02 -0.289407 19 14 551 400 60 70 0 0 CC 11.422646 38 0 1050 0 KEEP + E2f2 YES B[a]P_2 chr4 135762535 135762535 C G exonic Asap3 nonsynonymous SNV NM_001008232:c.C102G:p.C34W exonic Asap3 nonsynonymous SNV uc008vhu.2:c.C102G:p.C34W exonic ENSMUSG00000036995 nonsynonymous SNV ENSMUST00000047526:c.C102G:p.C34W 4qD3 NA NA chr4 135762535 GTGxCGC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 102 0 0 73.727635 0.509434 0.02 1.328784 26 27 713 768 60 60 0 0 CC 12.59383 42 0 1123 0 KEEP + Asap3 NO B[a]P_2 chr4 137121769 137121769 G T exonic Hspg2 stopgain SNV NM_008305:c.G12532T:p.E4178X exonic Hspg2 stopgain SNV uc008vjf.2:c.G4639T:p.E1547X exonic ENSMUSG00000028763 stopgain SNV ENSMUST00000097839:c.G10501T:p.E3501X 4qD3 NA NA chr4 137121769 GTGxAGT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 130 0 0 67.246665 0.411765 0.02 1.001233 40 28 1139 739 60 60 0 0 GG 14.692039 49 0 1368 0 KEEP + Hspg2 YES B[a]P_2 chr4 137873208 137873208 G C intronic Pink1 NA NA intronic Pink1 NA NA intronic ENSMUSG00000028756 NA NA 4qD3 NA NA chr4 137873208 CTGxCCA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954489 0.954491 0.999997 89 0 0 58.754783 0.44898 0.02 -0.42969 27 22 758 629 60 60 0 0 GG 9.324153 31 0 864 0 KEEP - Pink1 NO B[a]P_2 chr4 138970455 138970455 T A intronic Ubr4 NA NA intronic Ubr4 NA NA intronic ENSMUSG00000066036 NA NA 4qD3 NA NA chr4 138970455 CCAxGGT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9266 0.92664 0.999957 79 0 0 56.663344 0.488889 0.02 -0.394262 23 22 621 597 60 60 0 0 TT 7.50603 25 0 655 0 KEEP + Ubr4 NO B[a]P_2 chr4 144145696 144145696 A T intronic Gm13124 NA NA intronic Gm13124 NA NA intronic ENSMUSG00000078506 NA NA 4qE1 NA NA chr4 144145696 ACAxCAA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229163 0.229173 0.999957 45 0 0 21.713002 0.533333 0.02 -0.13152 7 8 191 224 60 60 0 0 AA 7.81905 26 0 701 0 KEEP - Gm13124 NO B[a]P_2 chr4 147415854 147415854 G A exonic Mthfr nonsynonymous SNV NM_001161798:c.G272A:p.R91H exonic Mthfr nonsynonymous SNV uc008vtw.1:c.G149A:p.R50H exonic ENSMUSG00000029009 nonsynonymous SNV ENSMUST00000069604:c.G272A:p.R91H 4qE2 "Score=0.980769;Name=No.87274,chr5:78902899" NA chr4 147415854 GGCxCAG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 119 3 2 6.524138 0.086957 0.02 -0.401994 42 4 1038 105 60 36 0 0 GG 14.331708 57 1 1392 26 KEEP + Mthfr NO B[a]P_2 chr4 44710470 44710470 G T exonic Pax5 nonsynonymous SNV NM_008782:c.C136A:p.H46N exonic Pax5 nonsynonymous SNV uc008srx.1:c.C136A:p.H46N exonic ENSMUSG00000014030 nonsynonymous SNV ENSMUST00000014174:c.C136A:p.H46N 4qB1 NA NA chr4 44710470 GATxGGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 69 0 0 14.406696 0.285714 0.02 -0.184178 15 6 446 170 60 60 0 0 GG 11.431831 38 0 1097 0 KEEP - Pax5 YES B[a]P_2 chr4 45412728 45412728 C A exonic Slc25a51 synonymous SNV NM_001009949:c.G282T:p.T94T exonic Mcart1 synonymous SNV uc008ssr.2:c.G282T:p.T94T exonic ENSMUSG00000045973 synonymous SNV ENSMUST00000116341:c.G282T:p.T94T 4qB1 "Score=0.947541;Name=No.87911,chr7:135297487" NA chr4 45412728 CAGxGTG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 498 1 0 236.484255 0.329787 0.02 6.569416 189 93 4738 2697 60 60 0 0 CC 46.767871 156 0 3891 0 KEEP - Slc25a51 YES B[a]P_2 chr4 63034421 63034421 C A exonic Akna nonsynonymous SNV NM_001045514:c.G3513T:p.W1171C exonic Akna nonsynonymous SNV uc008tgb.2:c.G3513T:p.W1171C exonic ENSMUSG00000039158 nonsynonymous SNV ENSMUST00000035724:c.G3513T:p.W1171C 4qC1 NA NA chr4 63034421 CCCxCAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 111 0 0 71.321973 0.490909 0.02 1.212911 28 27 802 750 60 60 0 0 CC 14.397203 48 0 1291 0 KEEP - Akna YES B[a]P_2 chr4 63079453 63079453 G A exonic Whrn synonymous SNV NM_001008792:c.C1917T:p.P639P exonic Whrn synonymous SNV uc008tgg.1:c.C834T:p.P278P exonic ENSMUSG00000039137 synonymous SNV ENSMUST00000107386:c.C282T:p.P94P 4qC1 NA NA chr4 63079453 AGTxGGA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 203 0 0 128.145517 0.515464 0.02 0.943236 47 50 1294 1335 60 60 0 0 GG 24.051785 80 0 2212 0 KEEP - Whrn NO B[a]P_2 chr4 63092945 63092945 T G exonic Whrn nonsynonymous SNV NM_001008791:c.A1568C:p.Y523S exonic Whrn nonsynonymous SNV uc008tgg.1:c.A497C:p.Y166S exonic ENSMUSG00000039137 nonsynonymous SNV ENSMUST00000145630:c.A19C:p.T7P 4qC1 NA NA chr4 63092945 CTGxAGG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 424 2 0 242.596736 0.44878 0.02 5.46729 113 92 3019 2600 60 60 0 0 TT 44.061103 147 0 3802 0 KEEP - Whrn NO B[a]P_2 chr4 89355577 89355577 G C exonic Dmrta1 nonsynonymous SNV NM_175647:c.G578C:p.R193P exonic Dmrta1 nonsynonymous SNV uc008tol.1:c.G578C:p.R193P exonic ENSMUSG00000043753 nonsynonymous SNV ENSMUST00000052478:c.G578C:p.R193P 4qC5 NA NA chr4 89355577 GCCxGTC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 121 0 0 43.691264 0.4 0.02 1.311921 33 22 874 493 60 60 0 0 GG 15.321407 51 0 1343 0 KEEP + Dmrta1 NO B[a]P_2 chr4 9209139 9209139 T C exonic Clvs1 synonymous SNV NM_028940:c.T435C:p.A145A exonic Clvs1 synonymous SNV uc008ryc.2:c.T435C:p.A145A exonic ENSMUSG00000041216 synonymous SNV ENSMUST00000038841:c.T435C:p.A145A 4qA1 NA NA chr4 9209139 TGCxGCC T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 121 0 0 59.07688 0.5 0.02 1.320483 27 27 747 625 60 60 0 0 TT 15.938525 53 0 1436 0 KEEP + Clvs1 NO B[a]P_2 chr4 98601317 98601317 A C exonic Usp1 nonsynonymous SNV NM_146144:c.A2176C:p.N726H exonic Usp1 nonsynonymous SNV uc008tum.1:c.A2176C:p.N726H exonic ENSMUSG00000028560 nonsynonymous SNV ENSMUST00000030289:c.A2176C:p.N726H 4qC6 "Score=0.972733;Name=No.81945,chr3:8328975" NA chr4 98601317 ATGxACG A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 279 2 7 54.590171 0.247423 0.02 1.041764 73 24 2062 667 60 60 0 0 AA 42.356068 141 0 3882 0 KEEP + Usp1 NO B[a]P_2 chr4 99097014 99097014 T A intergenic "Atg4c(dist=170536),Foxd3(dist=225976)" NA NA intergenic "Atg4c(dist=170536),Foxd3(dist=225976)" NA NA ncRNA_exonic ENSMUSG00000081150 NA NA 4qC6 "Score=0.911513;Name=No.88802,chr9:51810305" NA chr4 99097014 TCAxACC T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 223 3 6 17.092197 0.173913 0.02 -0.403329 38 8 1022 225 60 60 0 0 TT 45.101485 150 0 3982 0 KEEP NA Atg4c NO B[a]P_2 chr4 99634755 99634755 G C exonic Pgm2 nonsynonymous SNV NM_028132:c.G516C:p.K172N exonic Pgm2 nonsynonymous SNV uc008tva.2:c.G516C:p.K172N exonic ENSMUSG00000025791 nonsynonymous SNV ENSMUST00000058351:c.G516C:p.K172N 4qC6 NA NA chr4 99634755 AAAxCAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 76 0 0 24.480689 0.30303 0.02 -0.289394 23 10 651 285 60 60 0 0 GG 8.722873 29 0 815 0 KEEP + Pgm2 NO B[a]P_2 chr5 104640862 104640862 C A exonic Dmp1 synonymous SNV NM_016779:c.C384A:p.S128S exonic Dmp1 synonymous SNV uc008yke.1:c.C384A:p.S128S exonic ENSMUSG00000029307 synonymous SNV ENSMUST00000066708:c.C384A:p.S128S 5qE5 NA NA chr5 104640862 CTCxAAA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865708 0.865745 0.999957 71 0 0 29.07591 0.307692 0.02 -0.341807 27 12 747 338 60 60 0 0 CC 7.821488 26 0 744 0 KEEP + Dmp1 YES B[a]P_2 chr5 108150164 108150164 T C exonic Gfi1 nonsynonymous SNV NM_010278:c.A902G:p.E301G exonic Gfi1 nonsynonymous SNV uc008ymu.1:c.A38G:p.E13G ncRNA_exonic ENSMUSG00000029275 NA NA 5qF NA NA chr5 108150164 TGCxCCA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 144 0 0 131.940739 0.630137 0.02 1.153357 27 46 789 1309 60 60 0 0 TT 15.035154 50 0 1382 0 KEEP - Gfi1 NO B[a]P_2 chr5 110769280 110769280 G C exonic P2rx2 nonsynonymous SNV NM_153400:c.C1390G:p.P464A exonic P2rx2 nonsynonymous SNV uc008yqq.1:c.C1129G:p.P377A exonic ENSMUSG00000029503 nonsynonymous SNV ENSMUST00000058016:c.C1390G:p.P464A 5qF NA NA chr5 110769280 GAGxCCT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 200 0 0 51.695752 0.207207 0.02 2.614398 88 23 2470 653 60 60 0 0 GG 19.848641 66 0 1802 0 KEEP - P2rx2 NO B[a]P_2 chr5 112778422 112778422 A T exonic Hps4 nonsynonymous SNV NM_138646:c.A250T:p.I84F exonic Hps4 nonsynonymous SNV uc008yte.2:c.A250T:p.I84F exonic ENSMUSG00000042328 nonsynonymous SNV ENSMUST00000035279:c.A250T:p.I84F 5qF NA NA chr5 112778422 GCCxTCA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 141 0 0 15.520322 0.111111 0.02 1.162202 64 8 1751 226 60 60 0 0 AA 16.823815 56 0 1478 0 KEEP + Hps4 NO B[a]P_2 chr5 113214647 113214647 T C exonic Myo18b nonsynonymous SNV NM_028901:c.A5309G:p.Q1770R exonic Myo18b nonsynonymous SNV uc008ytr.2:c.A5309G:p.Q1770R exonic ENSMUSG00000072720 nonsynonymous SNV ENSMUST00000086617:c.A5309G:p.Q1770R 5qF NA NA chr5 113214647 ATCxGCT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 307 0 0 83.408376 0.291045 0.02 2.412196 95 39 2688 999 60 60 0 0 TT 39.384573 131 0 3569 0 KEEP - Myo18b NO B[a]P_2 chr5 114459859 114459859 C G exonic Dao synonymous SNV NM_010018:c.C12G:p.A4A exonic Dao synonymous SNV uc008yza.1:c.C12G:p.A4A exonic ENSMUSG00000042096 synonymous SNV ENSMUST00000086599:c.C12G:p.A4A 5qF NA NA chr5 114459859 GGCxGTG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 145 0 0 48.398299 0.275862 0.02 1.030971 63 24 1713 592 60 60 0 0 CC 14.433325 48 0 1295 0 KEEP + Dao NO B[a]P_2 chr5 114510075 114510075 T G exonic Svop synonymous SNV NM_026805:c.A445C:p.R149R exonic Svop synonymous SNV uc008yzb.1:c.A445C:p.R149R exonic ENSMUSG00000042078 synonymous SNV ENSMUST00000058472:c.A445C:p.R149R 5qF NA NA chr5 114510075 TCCxGCC T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780565 0.78106 0.999366 64 0 0 59.346334 0.676471 0.02 -0.297973 11 23 317 577 60 60 0 0 TT 5.113211 17 0 471 0 KEEP - Svop NO B[a]P_2 chr5 116047411 116047411 G T exonic Gcn1l1 nonsynonymous SNV NM_172719:c.G3659T:p.G1220V exonic Gcn1l1 nonsynonymous SNV uc008zeg.1:c.G3659T:p.G1220V exonic ENSMUSG00000041638 nonsynonymous SNV ENSMUST00000064454:c.G3659T:p.G1220V 5qF NA NA chr5 116047411 TGGxACG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 204 2 0 51.673866 0.245098 0.02 2.301165 77 25 2157 644 60 60 0 0 GG 21.343567 71 0 1987 0 KEEP + Gcn1l1 YES B[a]P_2 chr5 118005230 118005230 G T exonic Ksr2 nonsynonymous SNV NM_001114545:c.G733T:p.G245C exonic Ksr2 nonsynonymous SNV uc008zfu.1:c.G733T:p.G245C exonic ENSMUSG00000061578 nonsynonymous SNV ENSMUST00000073347:c.G733T:p.G245C 5qF NA NA chr5 118005230 TCAxGCC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99899 0.998993 0.999998 117 0 0 46.738614 0.372549 0.02 1.011259 32 19 909 523 70 60 0 0 GG 9.905712 33 0 902 0 KEEP + Ksr2 YES B[a]P_2 chr5 124733707 124733707 C A exonic Mphosph9 stopgain SNV NM_001081323:c.G2179T:p.E727X exonic Mphosph9 stopgain SNV uc008zpg.1:c.G2128T:p.E710X exonic ENSMUSG00000038126 stopgain SNV ENSMUST00000031344:c.G2179T:p.E727X 5qF NA NA chr5 124733707 GCTxTGC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 182 0 0 124.851754 0.661765 0.02 1.001072 23 45 662 1223 60 60 0 0 CC 24.956905 83 0 2372 0 KEEP - Mphosph9 YES B[a]P_2 chr5 124850074 124850074 C A exonic Sbno1 nonsynonymous SNV NM_001081203:c.G1811T:p.C604F exonic Sbno1 nonsynonymous SNV uc008zpp.1:c.G1808T:p.C603F exonic ENSMUSG00000038095 nonsynonymous SNV ENSMUST00000164898:c.G1703T:p.C568F 5qF NA NA chr5 124850074 ATAxACA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 273 0 0 245.125657 0.646617 0.02 2.4212 47 86 1265 2416 60 60 0 0 CC 33.086691 110 0 3081 0 KEEP - Sbno1 YES B[a]P_2 chr5 130129341 130129341 G C intergenic "Mmp17(dist=15255),Zfp11(dist=31129)" NA NA upstream AK210533 NA NA exonic ENSMUSG00000057244 nonsynonymous SNV ENSMUST00000076842:c.C406G:p.H136D 5qG1.3 NA NA chr5 130129341 CGTxACC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 140 0 20 7.636179 0.083333 0.02 -0.420777 44 4 1237 117 60 25 0 0 GG 17.359757 68 1 1899 29 KEEP NA Mmp17 NO B[a]P_2 chr5 130276577 130276577 G C exonic Psph nonsynonymous SNV NM_133900:c.C180G:p.D60E exonic Psph nonsynonymous SNV uc008zth.2:c.C180G:p.D60E exonic ENSMUSG00000029446 nonsynonymous SNV ENSMUST00000118268:c.C180G:p.D60E 5qG1.3 NA NA chr5 130276577 CGCxTCT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 152 0 0 30.895505 0.194805 0.02 1.119907 62 15 1488 402 60 60 0 0 GG 20.126844 67 0 1638 0 KEEP - Psph NO B[a]P_2 chr5 135101205 135101205 A C intronic Eif4h NA NA ncRNA_intronic AK188353 NA NA intronic ENSMUSG00000040731 NA NA 5qG2 NA NA chr5 135101205 GCAxGTT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 208 0 0 16.948111 0.083333 0.02 2.133674 110 10 3090 271 60 60 0 0 AA 20.447546 68 0 1854 0 KEEP - Eif4h NO B[a]P_2 chr5 135608332 135608332 T C exonic Mlxipl synonymous SNV NM_021455:c.T1234C:p.L412L exonic Mlxipl synonymous SNV uc008zxt.1:c.T1234C:p.L412L exonic ENSMUSG00000005373 synonymous SNV ENSMUST00000005507:c.T1234C:p.L412L 5qG2 NA NA chr5 135608332 GGCxTAG T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 521 2 0 81.661267 0.208791 0.02 3.652189 144 38 4019 1040 60 60 0 0 TT 72.339318 244 1 6768 9 KEEP + Mlxipl NO B[a]P_2 chr5 135846075 135846075 G T exonic Nsun5 nonsynonymous SNV NM_145414:c.G108T:p.L36F exonic Nsun5 nonsynonymous SNV uc008zyh.1:c.G108T:p.L36F exonic ENSMUSG00000000916 nonsynonymous SNV ENSMUST00000000940:c.G108T:p.L36F 5qG2 NA NA chr5 135846075 GTTxTAC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 169 0 0 208.728487 0.747368 0.02 0.960499 24 71 676 1982 60 60 0 0 GG 19.55056 65 0 1815 0 KEEP + Nsun5 YES B[a]P_2 chr5 136539949 136539949 A C exonic Upk3bl nonsynonymous SNV NM_027158:c.A661C:p.S221R exonic 2310043J07Rik nonsynonymous SNV uc008zzr.2:c.A661C:p.S221R exonic ENSMUSG00000006143 nonsynonymous SNV ENSMUST00000006303:c.A661C:p.S221R 5qG2 NA NA chr5 136539949 TTGxGTA A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 331 0 0 75.91416 0.27907 0.02 2.358371 93 36 2652 919 60 60 0 0 AA 44.810038 149 0 4141 0 KEEP + Upk3bl NO B[a]P_2 chr5 137429464 137429464 A T intronic Fis1 NA NA intronic Fis1 NA NA intronic ENSMUSG00000019054 NA NA 5qG2 NA NA chr5 137429464 GTAxGTG A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 151 0 0 27.294105 0.19403 0.02 1.107689 54 13 1549 354 60 60 0 0 AA 18.586117 62 0 1702 0 KEEP + Fis1 NO B[a]P_2 chr5 137589698 137589698 C T exonic Trim56 nonsynonymous SNV NM_201373:c.G833A:p.R278Q exonic Trim56 nonsynonymous SNV uc009abp.1:c.G833A:p.R278Q exonic ENSMUSG00000043279 nonsynonymous SNV ENSMUST00000054384:c.G833A:p.R278Q 5qG2 NA NA chr5 137589698 GCCxGGA C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 229 1 0 9.995725 0.055046 0.02 2.632175 103 6 2527 172 60 60 0 0 CC 26.708565 89 0 2160 0 KEEP - Trim56 NO B[a]P_2 chr5 138024355 138024355 C A exonic Tfr2 synonymous SNV NM_015799:c.C1644A:p.T548T exonic Trfr2 synonymous SNV uc009acy.1:c.C1776A:p.T592T exonic ENSMUSG00000029716 synonymous SNV ENSMUST00000111009:c.C1398A:p.T466T 5qG2 NA NA chr5 138024355 CACxCAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 164 0 0 129.809049 0.652778 0.02 1.153478 25 47 703 1276 60 60 0 0 CC 20.739175 73 1 1975 10 KEEP + Tfr2 YES B[a]P_2 chr5 138737924 138737924 T C intronic Stag3 NA NA intronic Stag3 NA NA intronic ENSMUSG00000036928 NA NA 5qG2 NA NA chr5 138737924 CTGxCTA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 129 0 0 132.939883 0.725806 0.02 1.348502 17 45 464 1273 60 60 0 0 TT 16.541476 55 0 1500 0 KEEP + Stag3 NO B[a]P_2 chr5 139832989 139832989 G T downstream Cyp2w1 NA NA downstream Cyp2w1 NA NA downstream ENSMUSG00000029541 NA NA 5qG2 NA NA chr5 139832989 AGGxTGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 119 0 0 106.255739 0.765957 0.02 -0.412131 11 36 305 1002 60 60 0 0 GG 12.861596 48 1 1295 14 KEEP NA Cyp2w1 YES B[a]P_2 chr5 140999844 140999844 G T exonic Chst12 nonsynonymous SNV NM_021528:c.G271T:p.V91L exonic Chst12 nonsynonymous SNV uc009ahs.2:c.G271T:p.V91L exonic ENSMUSG00000036599 nonsynonymous SNV ENSMUST00000043050:c.G271T:p.V91L 5qG2 NA NA chr5 140999844 CCGxTGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 149 3 0 60.899789 0.329114 0.02 1.003916 53 26 1453 702 60 60 0 0 GG 13.814865 46 0 1246 0 KEEP + Chst12 YES B[a]P_2 chr5 141105448 141105448 A C exonic Ttyh3 nonsynonymous SNV NM_175274:c.T1138G:p.F380V exonic Ttyh3 nonsynonymous SNV uc009ahw.2:c.T1138G:p.F380V exonic ENSMUSG00000036565 nonsynonymous SNV ENSMUST00000042661:c.T1138G:p.F380V 5qG2 NA NA chr5 141105448 AGAxGCC A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963707 0.963774 0.999931 83 1 0 76.603235 0.647059 0.02 1.150516 18 33 519 753 60 60 0 0 AA 7.520009 25 0 702 0 KEEP - Ttyh3 NO B[a]P_2 chr5 14232077 14232077 C G exonic Sema3e nonsynonymous SNV NM_011348:c.C1226G:p.P409R exonic Sema3e nonsynonymous SNV uc012dsh.1:c.C407G:p.P136R exonic ENSMUSG00000063531 nonsynonymous SNV ENSMUST00000073957:c.C1226G:p.P409R 5qA1 NA NA chr5 14232077 ATCxTCT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 170 0 0 100.259109 0.655738 0.02 1.151971 21 40 608 983 60 60 0 0 CC 26.161029 87 0 2462 0 KEEP + Sema3e NO B[a]P_2 chr5 145594289 145594289 G C exonic Trrap nonsynonymous SNV NM_001081362:c.G8293C:p.G2765R exonic Trrap nonsynonymous SNV uc009alu.1:c.G4429C:p.G1477R exonic ENSMUSG00000045482 nonsynonymous SNV ENSMUST00000038980:c.G8293C:p.G2765R 5qG2 NA NA chr5 145594289 CACxGTT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 254 0 0 39.282497 0.175 0.02 2.616459 99 21 2600 534 60 60 0 0 GG 28.840793 96 0 2481 0 KEEP + Trrap NO B[a]P_2 chr5 145959629 145959629 C A exonic Zkscan14 nonsynonymous SNV NM_023322:c.G437T:p.W146L exonic Zkscan14 nonsynonymous SNV uc009amm.1:c.G437T:p.W146L exonic ENSMUSG00000029627 nonsynonymous SNV ENSMUST00000031632:c.G437T:p.W146L 5qG2 NA NA chr5 145959629 TCCxAGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 113 0 0 112.586353 0.709091 0.02 1.212938 16 39 457 1084 60 60 0 0 CC 13.22355 44 0 1229 0 KEEP - Zkscan14 YES B[a]P_2 chr5 14680514 14680514 T G exonic Pclo nonsynonymous SNV NM_001110796:c.T9029G:p.V3010G exonic Pclo nonsynonymous SNV uc008wmj.2:c.T137G:p.V46G exonic ENSMUSG00000061601 nonsynonymous SNV ENSMUST00000030691:c.T9029G:p.V3010G 5qA1 NA NA chr5 14680514 GTGxTTT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 246 0 0 81.223338 0.263158 0.02 2.412441 98 35 2658 978 60 60 0 0 TT 28.55275 95 0 2512 0 KEEP + Pclo NO B[a]P_2 chr5 147770809 147770809 G C exonic Mtif3 nonsynonymous SNV NM_001256102:c.C43G:p.L15V exonic Mtif3 nonsynonymous SNV uc009anp.1:c.C43G:p.L15V exonic ENSMUSG00000016510 nonsynonymous SNV ENSMUST00000066675:c.C43G:p.L15V 5qG3 NA NA chr5 147770809 CAAxCTT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 77 0 0 34.547295 0.341463 0.02 -0.359554 27 14 776 393 60 60 0 0 GG 9.022725 30 0 822 0 KEEP - Mtif3 NO B[a]P_2 chr5 148995641 148995641 T G intronic Mtus2 NA NA intronic "C130038G02Rik,Mtus2" NA NA ncRNA_exonic ENSMUSG00000066554 NA NA 5qG3 "Score=0.909953;Name=No.93385,chrX:159915580" NA chr5 148995641 AACxTCC T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 114 0 0 21.107683 0.193548 0.02 0.956391 50 12 1437 286 60 60 0 0 TT 12.631901 42 0 1159 0 KEEP + Mtus2 NO B[a]P_2 chr5 16236456 16236456 A G intergenic "Hgf(dist=111199),Speer4f(dist=745484)" NA NA intergenic "Hgf(dist=111199),Speer4f(dist=745484)" NA NA splicing ENSMUSG00000059179(ENSMUST00000073014:exon2:c.435+2T>C) NA NA 5qA2 "Score=0.993329;Name=No.82550,chr3:54285349" NA chr5 16236456 CAAxTCC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 283 0 0 217.999058 0.716981 0.02 2.559334 30 76 820 2092 60 60 0 0 AA 44.738229 149 0 3987 0 KEEP NA Hgf NO B[a]P_2 chr5 23838759 23838759 C A exonic Kcnh2 synonymous SNV NM_013569:c.G423T:p.P141P exonic Kcnh2 synonymous SNV uc008wrc.1:c.G423T:p.P141P exonic ENSMUSG00000038319 synonymous SNV ENSMUST00000036092:c.G423T:p.P141P 5qA3 NA NA chr5 23838759 AGCxGGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 185 0 0 46.026317 0.212766 0.02 1.068376 74 20 1868 576 60 60 0 0 CC 20.383511 68 0 1672 0 KEEP - Kcnh2 YES B[a]P_2 chr5 23958274 23958274 G C exonic Agap3 nonsynonymous SNV NM_001256431:c.G250C:p.A84P exonic Agap3 nonsynonymous SNV uc008wru.1:c.G250C:p.A84P exonic ENSMUSG00000023353 nonsynonymous SNV ENSMUST00000024123:c.G250C:p.A84P 5qA3 NA NA chr5 23958274 TACxCCA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 45 0 0 27.612887 0.555556 0.02 -0.157608 8 10 172 282 60 60 0 0 GG 5.708647 19 0 473 0 KEEP + Agap3 NO B[a]P_2 chr5 27377439 27377439 T C intronic Dpp6 NA NA intronic Dpp6 NA NA intronic ENSMUSG00000061576 NA NA 5qB1 NA NA chr5 27377439 GTTxAGT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888779 0.888875 0.999892 66 0 0 81.011214 0.682927 0.02 -0.359402 13 28 363 788 60 60 0 0 TT 6.917073 23 0 624 0 KEEP + Dpp6 NO B[a]P_2 chr5 31363952 31363952 T G exonic Cad synonymous SNV NM_023525:c.T1743G:p.A581A exonic Cad synonymous SNV uc008wwy.1:c.T1743G:p.A581A exonic ENSMUSG00000013629 synonymous SNV ENSMUST00000013773:c.T1743G:p.A581A 5qB1 NA NA chr5 31363952 AGCxTTT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851864 0.851984 0.999859 67 2 0 67.858755 0.72973 0.02 -0.332954 10 27 291 644 60 60 0 0 TT 5.412292 18 0 495 0 KEEP + Cad NO B[a]P_2 chr5 34227998 34227998 G C intronic Whsc1 NA NA ncRNA_intronic mKIAA1090 NA NA intronic ENSMUSG00000057406 NA NA 5qB2 NA NA chr5 34227998 AAAxTAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.90903 0.909069 0.999957 74 0 0 27.769861 0.27907 0.02 -0.377085 31 12 888 331 60 60 0 0 GG 7.819919 26 0 731 0 KEEP + Whsc1 NO B[a]P_2 chr5 36340268 36340268 G C exonic Afap1 synonymous SNV NM_027373:c.G2106C:p.L702L exonic Afap1 synonymous SNV uc008xej.1:c.G2106C:p.L702L exonic ENSMUSG00000029094 synonymous SNV ENSMUST00000064571:c.G2106C:p.L702L 5qB3 NA NA chr5 36340268 CCTxAAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 110 2 0 31.066524 0.276596 0.02 -0.412181 34 13 996 369 60 60 0 0 GG 13.237109 44 0 1274 0 KEEP + Afap1 NO B[a]P_2 chr5 50351888 50351888 T A exonic Gpr125 nonsynonymous SNV NM_133911:c.A3556T:p.S1186C exonic Gpr125 nonsynonymous SNV uc008xjz.2:c.A3556T:p.S1186C exonic ENSMUSG00000029090 nonsynonymous SNV ENSMUST00000030971:c.A3556T:p.S1186C 5qB3 NA NA chr5 50351888 CACxTGT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 347 1 0 130.482229 0.303867 0.02 3.49897 126 55 3572 1525 60 60 0 0 TT 37.598067 125 0 3475 0 KEEP - Gpr125 NO B[a]P_2 chr5 64196281 64196281 A C exonic 3110047P20Rik nonsynonymous SNV NM_177006:c.A1968C:p.K656N exonic 3110047P20Rik nonsynonymous SNV uc008xmf.2:c.A1968C:p.K656N exonic ENSMUSG00000090061 nonsynonymous SNV ENSMUST00000159584:c.A1968C:p.K656N 5qC3.1 NA NA chr5 64196281 GAAxCTG A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967422 0.967425 0.999997 88 0 0 110.05883 0.730769 0.02 1.337567 14 38 387 1051 60 60 0 0 AA 8.420248 28 0 756 0 KEEP + 3110047P20Rik NO B[a]P_2 chr5 75971092 75971092 G T exonic Kit nonsynonymous SNV NM_001122733:c.G16T:p.G6C exonic Kit nonsynonymous SNV uc008xug.2:c.G16T:p.G6C exonic ENSMUSG00000005672 nonsynonymous SNV ENSMUST00000005815:c.G16T:p.G6C 5qC3.3 NA NA chr5 75971092 CGCxGCG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 302 2 0 42.793865 0.15625 0.02 2.467874 108 20 2667 573 60 60 0 0 GG 36.309213 121 0 3043 0 KEEP + Kit YES B[a]P_2 chr5 77711191 77711191 A G exonic Rest nonsynonymous SNV NM_011263:c.A2431G:p.S811G exonic Rest nonsynonymous SNV uc008xvz.2:c.A2431G:p.S811G exonic ENSMUSG00000029249 nonsynonymous SNV ENSMUST00000080359:c.A2431G:p.S811G 5qC3.3 NA NA chr5 77711191 CTGxGTG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 395 4 0 43.608268 0.116751 0.02 3.635581 174 23 5039 634 60 60 0 0 AA 43.891018 146 0 4049 0 KEEP + Rest NO B[a]P_2 chr5 8685285 8685285 T G exonic Abcb1a nonsynonymous SNV NM_011076:c.T391G:p.F131V exonic Abcb1a nonsynonymous SNV uc008wkl.1:c.T391G:p.F131V exonic ENSMUSG00000040584 nonsynonymous SNV ENSMUST00000047753:c.T391G:p.F131V 5qA1 NA NA chr5 8685285 TCAxTTT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 171 1 0 43.058023 0.223529 0.02 0.94989 66 19 1809 536 60 60 0 0 TT 18.645089 62 0 1680 0 KEEP + Abcb1a NO B[a]P_2 chr5 87320442 87320442 G T exonic Ugt2b34 synonymous SNV NM_153598:c.C1384A:p.R462R exonic Ugt2b34 synonymous SNV uc008xyb.1:c.C1384A:p.R462R exonic ENSMUSG00000029260 synonymous SNV ENSMUST00000031181:c.C1384A:p.R462R 5qE1 NA NA chr5 87320442 CTCxGTC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 216 0 0 37.257628 0.177083 0.02 0.952135 79 17 2038 486 60 60 0 0 GG 27.339667 91 0 2340 0 KEEP - Ugt2b34 YES B[a]P_2 chr5 9261147 9261147 C A intergenic "Dmtf1(dist=99371),9330182L06Rik(dist=5046)" NA NA intergenic "Dmtf1(dist=99371),9330182L06Rik(dist=5046)" NA NA ncRNA_exonic ENSMUSG00000080875 NA NA 5qA1 NA NA chr5 9261147 AGTxGCG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 126 0 0 19.626805 0.195652 0.02 -0.403091 37 9 924 252 60 60 0 0 CC 17.678328 59 0 1493 0 KEEP NA Dmtf1 YES B[a]P_2 chr5 92725059 92725059 C T exonic Sdad1 synonymous SNV NM_172713:c.G1023A:p.R341R exonic Sdad1 synonymous SNV uc008yct.1:c.G1023A:p.R341R exonic ENSMUSG00000029415 synonymous SNV ENSMUST00000031364:c.G1023A:p.R341R 5qE2 NA NA chr5 92725059 AAAxCTT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353922 0.353947 0.999931 48 0 0 11.831551 0.263158 0.02 -0.166578 14 5 381 142 60 60 0 0 CC 7.516996 25 0 686 0 KEEP - Sdad1 NO B[a]P_2 chr6 113442904 113442904 G T UTR3 Creld1 NA NA UTR3 Creld1 NA NA UTR3 ENSMUSG00000030284 NA NA 6qE3 NA NA chr6 113442904 GCCxCCA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963762 0.963774 0.999988 87 0 0 78.208665 0.54902 0.02 1.346306 23 28 637 801 60 60 0 0 GG 8.119526 27 0 730 0 KEEP + Creld1 YES B[a]P_2 chr6 113597694 113597694 G T exonic Irak2 nonsynonymous SNV NM_001113553:c.G156T:p.Q52H exonic "Irak-2,Irak2" nonsynonymous SNV uc009dhb.2:c.G156T:p.Q52H exonic ENSMUSG00000060477 nonsynonymous SNV ENSMUST00000059286:c.G156T:p.Q52H 6qE3 NA NA chr6 113597694 CCAxGGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999998 86 0 0 61.977189 0.5 0.02 -0.420711 24 24 678 650 60 60 0 0 GG 9.926481 33 0 931 0 KEEP + Irak2 YES B[a]P_2 chr6 121310513 121310513 G C exonic Slc6a12 synonymous SNV NM_133661:c.G1179C:p.L393L exonic Slc6a12 synonymous SNV uc009dok.1:c.G1137C:p.L379L exonic ENSMUSG00000030109 synonymous SNV ENSMUST00000171008:c.G1137C:p.L379L 6qF1 NA NA chr6 121310513 GCTxTGG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 178 0 0 22.412989 0.139241 0.02 1.100818 68 11 1894 310 60 60 0 0 GG 20.733174 69 0 1905 0 KEEP + Slc6a12 NO B[a]P_2 chr6 121801456 121801456 C A exonic Mug1 nonsynonymous SNV NM_008645:c.C808A:p.R270S exonic Mug1 nonsynonymous SNV uc009dor.1:c.C808A:p.R270S exonic ENSMUSG00000059908 nonsynonymous SNV ENSMUST00000032228:c.C808A:p.R270S 6qF1 "Score=0.919883;Name=No.94032,chr6:122085334" NA chr6 121801456 TGCxGTG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 187 0 0 92.285116 0.465753 0.02 1.253678 39 34 945 979 60 60 0 0 CC 25.237326 84 0 2101 0 KEEP + Mug1 YES B[a]P_2 chr6 121801458 121801458 T G exonic Mug1 synonymous SNV NM_008645:c.T810G:p.R270R exonic Mug1 synonymous SNV uc009dor.1:c.T810G:p.R270R exonic ENSMUSG00000059908 synonymous SNV ENSMUST00000032228:c.T810G:p.R270R 6qF1 "Score=0.919883;Name=No.94032,chr6:122085334" NA chr6 121801458 CCGxGAG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 187 0 0 88.512307 0.465753 0.02 1.153674 39 34 1061 942 60 60 0 0 TT 24.950066 83 0 2238 0 KEEP + Mug1 NO B[a]P_2 chr6 121828489 121828489 T G intronic Mug1 NA NA intronic Mug1 NA NA intronic ENSMUSG00000059908 NA NA 6qF1 "Score=0.901196;Name=No.94033,chr6:122155831" NA chr6 121828489 TTCxTTT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 387 0 0 81.544378 0.338983 0.02 2.258204 78 40 2233 953 60 60 0 0 TT 63.167654 210 0 5889 0 KEEP + Mug1 NO B[a]P_2 chr6 122192233 122192233 G C ncRNA_exonic Mug-ps1 NA NA exonic MUG3 nonsynonymous SNV uc012esd.1:c.G811C:p.A271P intergenic "ENSMUSG00000071204(dist=90199),ENSMUSG00000030114(dist=28381)" NA NA 6qF1 "Score=0.920219;Name=No.94041,chr6:122000030" NA chr6 122192233 CAGxCTT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 116 0 0 81.862151 0.517241 0.02 1.375786 28 30 783 850 60 60 0 0 GG 13.232799 44 0 1202 0 KEEP + Mug-ps1 NO B[a]P_2 chr6 124693308 124693308 C T exonic Atn1 stopgain SNV NM_007881:c.G3434A:p.W1145X exonic Atn1 stopgain SNV uc009drq.1:c.G3434A:p.W1145X exonic ENSMUSG00000004263 stopgain SNV ENSMUST00000088357:c.G3434A:p.W1145X 6qF2 NA NA chr6 124693308 AGCxACT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.421506 0.423478 0.995343 38 0 0 29.935752 0.52381 0.02 -0.184124 10 11 267 310 60 60 0 0 CC 4.21143 14 0 397 0 KEEP - Atn1 NO B[a]P_2 chr6 124789427 124789427 C T intronic Gnb3 NA NA UTR5 Gnb3 NA NA intronic ENSMUSG00000023439 NA NA 6qF2 NA NA chr6 124789427 CTGxGGG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 149 2 0 105.448443 0.541667 0.02 1.064179 33 39 794 1084 60 60 0 0 CC 14.447135 58 1 1419 28 KEEP - Gnb3 NO B[a]P_2 chr6 125073581 125073581 G T exonic Chd4 nonsynonymous SNV NM_145979:c.G5252T:p.R1751L exonic Chd4 nonsynonymous SNV uc009dtk.1:c.G5252T:p.R1751L exonic ENSMUSG00000063870 nonsynonymous SNV ENSMUST00000056889:c.G5252T:p.R1751L 6qF2 NA NA chr6 125073581 CCCxGTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 111 0 0 39.728197 0.32 0.02 -0.438221 34 16 879 457 60 60 0 0 GG 14.124018 47 0 1198 0 KEEP + Chd4 YES B[a]P_2 chr6 126815796 126815796 G T exonic Akap3 synonymous SNV NM_009650:c.G1359T:p.L453L exonic Akap3 synonymous SNV uc009dvf.2:c.G1359T:p.L453L exonic ENSMUSG00000030344 synonymous SNV ENSMUST00000095440:c.G1359T:p.L453L 6qF3 NA NA chr6 126815796 TCTxGGT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851947 0.851984 0.999957 73 0 0 44.930999 0.459459 0.02 -0.333038 20 17 545 479 60 60 0 0 GG 7.821131 26 0 738 0 KEEP + Akap3 YES B[a]P_2 chr6 129823344 129823344 A G exonic Klra17 nonsynonymous SNV NM_133203:c.T160C:p.C54R exonic Klra17 nonsynonymous SNV uc009egt.2:c.T160C:p.C54R exonic ENSMUSG00000014543 nonsynonymous SNV ENSMUST00000087985:c.T160C:p.C54R 6qF3 NA NA chr6 129823344 CACxGAG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 451 5 0 10.442159 0.049383 0.02 3.134695 154 8 4374 204 70 29 0 0 AA 63.764481 212 0 5870 0 KEEP - Klra17 NO B[a]P_2 chr6 132986369 132986369 C A exonic Tas2r103 stopgain SNV NM_053211:c.G751T:p.E251X exonic Tas2r103 stopgain SNV uc012eug.1:c.G751T:p.E251X exonic ENSMUSG00000030196 stopgain SNV ENSMUST00000032317:c.G751T:p.E251X 6qG1 NA NA chr6 132986369 ACTxTGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.738068 0.739671 0.997832 51 0 0 35.30649 0.451613 0.02 -0.280612 17 14 488 379 60 60 0 0 CC 4.813277 16 0 458 0 KEEP - Tas2r103 YES B[a]P_2 chr6 134087347 134087347 C A exonic Etv6 nonsynonymous SNV NM_007961:c.C78A:p.S26R exonic Etv6 nonsynonymous SNV uc009eke.1:c.C78A:p.S26R exonic ENSMUSG00000030199 nonsynonymous SNV ENSMUST00000081028:c.C78A:p.S26R 6qG1 NA NA chr6 134087347 AAGxCAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 244 3 0 95.240618 0.364486 0.02 2.649551 68 39 1904 1071 60 60 0 0 CC 32.729367 109 0 2940 0 KEEP + Etv6 YES B[a]P_2 chr6 13533040 13533040 G C exonic Tmem168 nonsynonymous SNV NM_028990:c.C1841G:p.A614G exonic Tmem168 nonsynonymous SNV uc009ayo.1:c.C689G:p.A230G exonic ENSMUSG00000029569 nonsynonymous SNV ENSMUST00000031554:c.C1841G:p.A614G 6qA1 NA NA chr6 13533040 ACGxCCC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 90 0 0 59.480558 0.46 0.02 -0.438383 27 23 762 635 60 60 0 0 GG 9.622913 32 0 871 0 KEEP - Tmem168 NO B[a]P_2 chr6 135683280 135683280 C G exonic Grin2b synonymous SNV NM_008171:c.G3285C:p.S1095S exonic Grin2b synonymous SNV uc009elq.1:c.G3285C:p.S1095S exonic ENSMUSG00000030209 synonymous SNV ENSMUST00000053880:c.G3285C:p.S1095S 6qG1 NA NA chr6 135683280 GGCxGAG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 167 0 0 110.664513 0.409091 0.02 2.722045 65 45 1599 1215 60 60 0 0 CC 14.415213 48 0 1151 0 KEEP - Grin2b NO B[a]P_2 chr6 140372712 140372712 G T exonic Plekha5 nonsynonymous SNV NM_144920:c.G27T:p.W9C exonic Plekha5 nonsynonymous SNV uc009eob.1:c.G27T:p.W9C exonic ENSMUSG00000030231 nonsynonymous SNV ENSMUST00000087622:c.G27T:p.W9C 6qG2 NA NA chr6 140372712 GTGxATC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 73 0 0 22.614288 0.45 0.02 -0.175373 11 9 312 243 60 60 0 0 GG 11.727775 39 0 1077 0 KEEP + Plekha5 YES B[a]P_2 chr6 15353896 15353896 G C exonic Foxp2 nonsynonymous SNV NM_212435:c.G1171C:p.E391Q exonic Foxp2 nonsynonymous SNV uc009aza.1:c.G1171C:p.E391Q exonic ENSMUSG00000029563 nonsynonymous SNV ENSMUST00000115469:c.G1168C:p.E390Q 6qA1 NA NA chr6 15353896 TTAxAAA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 81 0 0 49.874363 0.529412 0.02 -0.298179 16 18 464 515 60 60 0 0 GG 11.431071 38 0 1083 0 KEEP + Foxp2 NO B[a]P_2 chr6 29403575 29403575 G T intronic Flnc NA NA intronic Flnc NA NA intronic ENSMUSG00000068699 NA NA 6qA3.3 NA NA chr6 29403575 GTGxTGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899252 0.899314 0.999931 71 0 0 33.168114 0.333333 0.02 -0.368298 28 14 798 381 60 60 0 0 GG 7.504305 25 0 681 0 KEEP + Flnc YES B[a]P_2 chr6 41721752 41721752 C A exonic Olfr459 nonsynonymous SNV NM_146576:c.G545T:p.G182V exonic Olfr459 nonsynonymous SNV uc009bqg.1:c.G545T:p.G182V exonic ENSMUSG00000045479 nonsynonymous SNV ENSMUST00000050412:c.G545T:p.G182V 6qB2.1 NA NA chr6 41721752 TGGxCCC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 96 0 0 14.098456 0.145833 0.02 -0.419499 41 7 1126 194 60 60 0 0 CC 12.269781 41 0 1109 0 KEEP - Olfr459 YES B[a]P_2 chr6 41919672 41919672 T G exonic Sval3 nonsynonymous SNV NM_001003952:c.T149G:p.V50G exonic Sval3 nonsynonymous SNV uc009bqk.1:c.T149G:p.V50G exonic ENSMUSG00000062833 nonsynonymous SNV ENSMUST00000080742:c.T149G:p.V50G 6qB2.1 NA NA chr6 41919672 AAGxTAT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 104 0 0 46.249986 0.38 0.02 -0.438183 31 19 846 516 60 60 0 0 TT 11.409326 38 0 1030 0 KEEP + Sval3 NO B[a]P_2 chr6 42469753 42469753 G A intergenic "Olfr456(dist=32540),Olfr455(dist=18313)" NA NA intergenic "Olfr456(dist=32540),Olfr455(dist=18313)" NA NA exonic ENSMUSG00000078177 nonsynonymous SNV ENSMUST00000104977:c.C572T:p.A191V 6qB2.1 NA NA chr6 42469753 CTGxCCT G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 310 0 0 31.917905 0.13913 0.02 2.383713 99 16 2742 444 60 60 0 0 GG 45.714446 152 0 4194 0 KEEP NA Olfr456 NO B[a]P_2 chr6 42592653 42592653 A C exonic Fam115c synonymous SNV NM_146174:c.T438G:p.G146G exonic Fam115c synonymous SNV uc009brn.1:c.T438G:p.G146G exonic ENSMUSG00000029851 synonymous SNV ENSMUST00000031879:c.T438G:p.G146G 6qB2.1 NA NA chr6 42592653 TCCxCCA A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 196 0 0 139.02968 0.51 0.02 1.015282 49 51 1344 1448 60 60 0 0 AA 23.977971 84 1 2213 11 KEEP - Fam115c NO B[a]P_2 chr6 42592956 42592956 C T exonic Fam115c synonymous SNV NM_146174:c.G135A:p.K45K exonic Fam115c synonymous SNV uc009brn.1:c.G135A:p.K45K exonic ENSMUSG00000029851 synonymous SNV ENSMUST00000031879:c.G135A:p.K45K 6qB2.1 NA NA chr6 42592956 GCCxTTG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 179 2 0 125.702939 0.542169 0.02 1.056866 38 45 1091 1291 60 60 0 0 CC 22.560243 75 0 2119 0 KEEP - Fam115c NO B[a]P_2 chr6 42740760 42740760 T C exonic Olfr452 nonsynonymous SNV NM_001011869:c.T721C:p.C241R exonic Olfr452 nonsynonymous SNV uc009brx.1:c.T721C:p.C241R exonic ENSMUSG00000057108 nonsynonymous SNV ENSMUST00000075468:c.T721C:p.C241R 6qB2.1 NA NA chr6 42740760 ACCxGTG T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 453 0 0 213.312499 0.461538 0.02 3.769866 105 90 2996 2289 60 60 0 0 TT 63.451026 211 0 5827 0 KEEP + Olfr452 NO B[a]P_2 chr6 50523766 50523766 T C exonic 4921507P07Rik synonymous SNV NM_027564:c.A1701G:p.R567R exonic 4921507P07Rik synonymous SNV uc009bxf.1:c.A1701G:p.R567R exonic ENSMUSG00000029828 synonymous SNV ENSMUST00000031852:c.A1701G:p.R567R 6qB2.3 NA NA chr6 50523766 ATCxCGG T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.967285 0.967425 0.999855 99 0 0 77.165095 0.538462 0.02 1.337505 24 28 692 794 60 60 0 0 TT 10.794005 36 0 985 0 KEEP + 4921507P07Rik NO B[a]P_2 chr6 50523767 50523767 C T exonic 4921507P07Rik nonsynonymous SNV NM_027564:c.G1700A:p.R567Q exonic 4921507P07Rik nonsynonymous SNV uc009bxf.1:c.G1700A:p.R567Q exonic ENSMUSG00000029828 nonsynonymous SNV ENSMUST00000031852:c.G1700A:p.R567Q 6qB2.3 NA NA chr6 50523767 TCTxGGA C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963773 0.963774 0.999999 97 0 0 74.970021 0.529412 0.02 1.248105 24 27 620 774 60 60 0 0 CC 10.817696 36 0 937 0 KEEP + 4921507P07Rik NO B[a]P_2 chr6 54435840 54435840 C A exonic Wipf3 nonsynonymous SNV NM_001167860:c.C1040A:p.P347H exonic Wipf3 nonsynonymous SNV uc012emf.1:c.C1040A:p.P347H exonic ENSMUSG00000086040 nonsynonymous SNV ENSMUST00000163746:c.C1040A:p.P347H 6qB3 NA NA chr6 54435840 CCCxCAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58289 0.58293 0.999931 61 0 0 33.569434 0.5 0.02 -0.227962 13 13 368 352 60 60 0 0 CC 7.516473 25 0 674 0 KEEP + Wipf3 YES B[a]P_2 chr6 58903431 58903431 A G intronic Fam13a NA NA intronic Fam13a NA NA intronic ENSMUSG00000037709 NA NA 6qB3 NA NA chr6 58903431 TTGxTGC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 70 0 0 12.87132 0.181818 0.02 -0.289356 27 6 747 168 60 60 0 0 AA 8.421925 28 0 777 0 KEEP - Fam13a NO B[a]P_2 chr6 67987136 67987136 G T intergenic "4930515G16Rik(dist=471443),Rprl1(dist=1289795)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076514 nonsynonymous SNV ENSMUST00000103315:c.G174T:p.Q58H 6qC1 "Score=0.967711;Name=No.93771,chr6:67798190" NA chr6 67987136 CCAxCAG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967423 0.967425 0.999997 97 0 4 43.720192 0.346154 0.02 1.239237 34 18 961 497 60 60 0 0 GG 10.225913 34 0 948 0 KEEP + 4930515G16Rik YES B[a]P_2 chr6 70265358 70265358 A C intergenic "Rprl1(dist=988190),Rpia(dist=450356)" NA NA ncRNA_intronic abParts NA NA intronic ENSMUSG00000076586 NA NA 6qC1 "Score=0.966459;Name=No.93923,chr6:70055642" NA chr6 70265358 AAAxGGT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 294 0 0 94.461686 0.405941 0.02 2.310105 60 41 1679 1046 60 60 0 0 AA 49.30993 164 0 4537 0 KEEP + Rprl1 NO B[a]P_2 chr6 84741260 84741260 G T exonic Exoc6b nonsynonymous SNV NM_177077:c.C2094A:p.F698L exonic Exoc6b nonsynonymous SNV uc009cpa.2:c.C2094A:p.F698L exonic ENSMUSG00000033769 nonsynonymous SNV ENSMUST00000165368:c.C93A:p.F31L 6qC3 NA NA chr6 84741260 GTTxAAC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 116 0 0 15.950637 0.142857 0.02 1.204146 48 8 1372 221 60 60 0 0 GG 12.634771 42 0 1208 0 KEEP - Exoc6b YES B[a]P_2 chr6 87379352 87379352 A T exonic Bmp10 nonsynonymous SNV NM_009756:c.A326T:p.K109M exonic Bmp10 nonsynonymous SNV uc012eol.1:c.A326T:p.K109M exonic ENSMUSG00000030046 nonsynonymous SNV ENSMUST00000032125:c.A326T:p.K109M 6qD1 NA NA chr6 87379352 TCAxGAA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 142 0 0 27.792328 0.19403 0.02 1.009767 54 13 1568 359 60 60 0 0 AA 15.69854 56 1 1570 10 KEEP + Bmp10 NO B[a]P_2 chr6 90594220 90594220 T A exonic Slc41a3 nonsynonymous SNV NM_001037493:c.T1169A:p.V390E exonic Slc41a3 nonsynonymous SNV uc009cxp.1:c.T1169A:p.V390E exonic ENSMUSG00000030089 nonsynonymous SNV ENSMUST00000032177:c.T1169A:p.V390E 6qD1 NA NA chr6 90594220 GCGxGGT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760782 0.760887 0.999863 63 0 0 37.710145 0.424242 0.02 -0.289396 19 14 529 408 60 60 0 0 TT 6.014602 20 0 542 0 KEEP + Slc41a3 NO B[a]P_2 chr6 91123141 91123141 C T exonic Hdac11 synonymous SNV NM_144919:c.C927T:p.A309A exonic Hdac11 synonymous SNV uc009cxv.1:c.C927T:p.A309A exonic ENSMUSG00000034245 synonymous SNV ENSMUST00000041736:c.C927T:p.A309A 6qD1 NA NA chr6 91123141 AGCxCGT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 157 0 0 93.247133 0.492754 0.02 1.287058 35 34 1011 978 60 60 0 0 CC 18.595714 62 0 1691 0 KEEP + Hdac11 NO B[a]P_2 chr7 107520903 107520903 T A UTR5 C2cd3 NA NA UTR5 C2cd3 NA NA exonic ENSMUSG00000047248 stopgain SNV ENSMUST00000169323:c.T20A:p.L7X 7qE3 NA NA chr7 107520903 GCTxAGG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 69 0 0 49.426291 0.580645 0.02 -0.271836 13 18 362 500 60 60 0 0 TT 9.319267 31 0 826 0 KEEP + C2cd3 NO B[a]P_2 chr7 109254802 109254802 G C UTR5 Art1 NA NA UTR5 Art1 NA NA UTR5 ENSMUSG00000030996 NA NA 7qE3 NA NA chr7 109254802 CCCxAGG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 128 1 0 79.204153 0.491525 0.02 1.474336 30 29 694 831 60 60 0 0 GG 16.525796 55 0 1391 0 KEEP + Art1 NO B[a]P_2 chr7 109703322 109703322 G C exonic Olfr549 nonsynonymous SNV NM_147101:c.G523C:p.V175L exonic Olfr549 nonsynonymous SNV uc009irv.1:c.G523C:p.V175L exonic ENSMUSG00000073977 nonsynonymous SNV ENSMUST00000098227:c.G523C:p.V175L 7qE3 NA NA chr7 109703322 AATxTGC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 93 0 0 49.997235 0.431818 0.02 -0.385789 25 19 684 540 60 60 0 0 GG 12.633297 42 0 1177 0 KEEP + Olfr549 NO B[a]P_2 chr7 109859899 109859899 A C UTR3 Olfr558 NA NA UTR3 Olfr558 NA NA UTR3 ENSMUSG00000070423 NA NA 7qE3 NA NA chr7 109859899 GTAxGAC A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.99986 54 0 0 6.366074 0.137931 0.02 -0.254161 25 4 695 95 60 60 0 0 AA 5.715429 19 0 538 0 KEEP + Olfr558 NO B[a]P_2 chr7 109861882 109861882 C G downstream Olfr33 NA NA downstream Olfr33 NA NA downstream ENSMUSG00000066273 NA NA 7qE3 NA NA chr7 109861882 GGTxTTT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 149 0 0 71.698281 0.4375 0.02 1.232372 36 28 1030 774 60 60 0 0 CC 19.226296 64 0 1808 0 KEEP NA Olfr33 NO B[a]P_2 chr7 11300328 11300328 A G exonic Nlrp4b nonsynonymous SNV NM_172481:c.A1108G:p.I370V exonic Nlrp4b nonsynonymous SNV uc009fdi.1:c.A1108G:p.I370V exonic ENSMUSG00000034087 nonsynonymous SNV ENSMUST00000132990:c.A7G:p.I3V 7qA1 NA NA chr7 11300328 CACxTCT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 154 1 0 58.693576 0.4 0.02 1.125403 39 26 1070 653 60 60 0 0 AA 20.418077 68 0 1789 0 KEEP + Nlrp4b NO B[a]P_2 chr7 114009342 114009342 C A exonic Olfr704 nonsynonymous SNV NM_001011749:c.C847A:p.P283T exonic Olfr704 nonsynonymous SNV uc009jai.1:c.C847A:p.P283T exonic ENSMUSG00000073900 nonsynonymous SNV ENSMUST00000098141:c.C847A:p.P283T 7qE3 NA NA chr7 114009342 ACTxCGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 234 0 3 115.461848 0.505618 0.02 0.914818 44 45 1262 1208 60 60 0 0 CC 34.593612 115 0 3264 0 KEEP + Olfr704 YES B[a]P_2 chr7 114070563 114070563 T C intergenic "Olfr1532-ps1(dist=11926),Olfr710(dist=17018)" NA NA intergenic "Olfr1532-ps1(dist=11926),Olfr710(dist=17018)" NA NA exonic ENSMUSG00000062553 nonsynonymous SNV ENSMUST00000072368:c.A409G:p.T137A 7qE3 NA NA chr7 114070563 GTGxCAT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 162 1 0 55.372623 0.392857 0.02 1.066448 34 22 926 612 60 60 0 0 TT 20.145038 67 0 1801 0 KEEP NA Olfr1532-ps1 NO B[a]P_2 chr7 115224307 115224307 T G upstream Olfr481 NA NA upstream Olfr481 NA NA upstream ENSMUSG00000054236 NA NA 7qE3 NA NA chr7 115224307 GAAxGAA T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353179 0.353947 0.997832 39 0 0 9.063539 0.210526 0.02 -0.1666 15 4 406 114 60 60 0 0 TT 4.811757 16 0 432 0 KEEP NA Olfr481 NO B[a]P_2 chr7 115461015 115461015 T G exonic Olfr491 synonymous SNV NM_146736:c.T606G:p.S202S exonic Olfr491 synonymous SNV uc009jcf.1:c.T606G:p.S202S exonic ENSMUSG00000049579 synonymous SNV ENSMUST00000053179:c.T606G:p.S202S 7qE3 NA NA chr7 115461015 CTCxGCT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 281 1 0 146.623694 0.558559 0.02 2.417601 49 62 1385 1502 60 60 0 0 TT 43.308094 144 0 4002 0 KEEP + Olfr491 NO B[a]P_2 chr7 118006355 118006355 G C exonic Lyve1 nonsynonymous SNV NM_053247:c.C28G:p.L10V exonic Lyve1 nonsynonymous SNV uc009jfr.1:c.C28G:p.L10V exonic ENSMUSG00000030787 nonsynonymous SNV ENSMUST00000033050:c.C28G:p.L10V 7qF1 NA NA chr7 118006355 GGAxTAA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 132 0 0 72.812772 0.451613 0.02 1.339788 34 28 948 780 60 60 0 0 GG 17.143932 57 0 1580 0 KEEP - Lyve1 NO B[a]P_2 chr7 125258355 125258355 T A exonic Rps15a nonsynonymous SNV NM_170669:c.A157T:p.I53F exonic Rps15a nonsynonymous SNV uc009jjn.1:c.A157T:p.I53F exonic ENSMUSG00000008683 nonsynonymous SNV ENSMUST00000106590:c.A157T:p.I53F 7qF2 NA NA chr7 125258355 CAAxGAT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 265 1 0 62.595783 0.273684 0.02 0.960458 69 26 1920 744 60 60 0 0 TT 36.387566 121 0 3263 0 KEEP - Rps15a NO B[a]P_2 chr7 127277490 127277490 C A exonic Zp2 nonsynonymous SNV NM_011775:c.G1741T:p.G581C exonic Zp2 nonsynonymous SNV uc009jmi.1:c.G1741T:p.G581C exonic ENSMUSG00000030911 nonsynonymous SNV ENSMUST00000033207:c.G1741T:p.G581C 7qF2 NA NA chr7 127277490 GACxGGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.888631 0.888875 0.999725 81 0 0 53.908454 0.487805 0.02 -0.359398 21 20 534 567 60 60 0 0 CC 9.891579 33 0 824 0 KEEP - Zp2 YES B[a]P_2 chr7 129912401 129912401 G T UTR3 Cacng3 NA NA UTR3 Cacng3 NA NA UTR3 ENSMUSG00000066189 NA NA 7qF3 NA NA chr7 129912401 CTTxGGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 309 0 0 148.680824 0.438462 0.02 2.348731 73 57 2072 1602 60 60 0 0 GG 42.69729 142 0 3955 0 KEEP + Cacng3 YES B[a]P_2 chr7 130314402 130314402 C T exonic Tnrc6a stopgain SNV NM_144925:c.C1900T:p.Q634X exonic Tnrc6a stopgain SNV uc009jpd.1:c.C1135T:p.Q379X exonic ENSMUSG00000052707 stopgain SNV ENSMUST00000094053:c.C1759T:p.Q587X 7qF3 NA NA chr7 130314402 GATxAGG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 69 0 0 15.136596 0.2 0.02 -0.306948 28 7 814 194 60 60 0 0 CC 8.423319 28 0 804 0 KEEP + Tnrc6a NO B[a]P_2 chr7 13186316 13186316 G T exonic Vmn2r53 nonsynonymous SNV NM_001104644:c.C765A:p.S255R exonic Vmn2r53 nonsynonymous SNV uc009ved.1:c.C765A:p.S255R exonic ENSMUSG00000091797 nonsynonymous SNV ENSMUST00000170412:c.C765A:p.S255R 7qA1 "Score=0.919701;Name=No.98184,chr7:13300535" NA chr7 13186316 GCTxCTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 219 0 16 46.38107 0.184874 0.02 2.338354 97 22 2759 606 60 60 0 0 GG 22.853375 76 0 2128 0 KEEP - Vmn2r53 YES B[a]P_2 chr7 132513337 132513337 A G UTR3 4930571K23Rik NA NA UTR3 4930571K23Rik NA NA UTR3 ENSMUSG00000090457 NA NA 7qF3 NA NA chr7 132513337 ACTxGGG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.756619 0.760887 0.994391 50 2 0 8.119613 0.121212 0.02 -0.289374 29 4 804 115 60 60 0 0 AA 3.909674 13 0 353 0 KEEP + 4930571K23Rik NO B[a]P_2 chr7 132847331 132847331 C A intronic Gtf3c1 NA NA intronic Gtf3c1 NA NA intronic ENSMUSG00000032777 NA NA 7qF3 NA NA chr7 132847331 TCTxCTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291966 0.292001 0.999879 42 0 0 14.67709 0.4 0.02 -0.149071 9 6 257 162 60 60 0 0 CC 6.617111 22 0 619 0 KEEP - Gtf3c1 YES B[a]P_2 chr7 134113525 134113525 G T intronic Sez6l2 NA NA intronic Sez6l2 NA NA intronic ENSMUSG00000030683 NA NA 7qF3 NA NA chr7 134113525 GTGxATG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 187 4 0 131.604639 0.576471 0.02 0.949883 36 49 1037 1334 60 60 0 0 GG 22.258543 74 0 2082 0 KEEP + Sez6l2 YES B[a]P_2 chr7 134519335 134519335 C A exonic Zfp747 synonymous SNV NM_175560:c.G6T:p.A2A exonic Zfp747 synonymous SNV uc009jvd.1:c.G6T:p.A2A exonic ENSMUSG00000054381 synonymous SNV ENSMUST00000067425:c.G6T:p.A2A 7qF3 "Score=0.947931;Name=No.101629,chr7:134525864" NA chr7 134519335 CTGxGCC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 48 0 0 31.83713 0.578947 0.02 -0.175297 8 11 184 322 60 60 0 0 CC 7.207527 24 0 568 0 KEEP - Zfp747 YES B[a]P_2 chr7 135151185 135151185 G T exonic Trim72 synonymous SNV NM_001079932:c.G456T:p.A152A exonic Trim72 synonymous SNV uc009jxv.2:c.G456T:p.A152A exonic ENSMUSG00000042828 synonymous SNV ENSMUST00000081042:c.G456T:p.A152A 7qF3 NA NA chr7 135151185 AGCxGTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 85 0 0 53.156818 0.527778 0.02 -0.315567 17 19 420 549 60 60 0 0 GG 10.518055 35 0 902 0 KEEP + Trim72 YES B[a]P_2 chr7 146768398 146768398 G T exonic Nkx6-2 nonsynonymous SNV NM_183248:c.C41A:p.A14E ncRNA_exonic Nkx6-2 NA NA exonic ENSMUSG00000041309 nonsynonymous SNV ENSMUST00000039606:c.C41A:p.A14E 7qF4 NA NA chr7 146768398 GGCxCGC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 58 0 0 19.639856 0.444444 0.02 -0.157396 10 8 261 212 60 60 0 0 GG 8.414276 28 0 729 0 KEEP - Nkx6-2 YES B[a]P_2 chr7 147130503 147130503 G C exonic Utf1 nonsynonymous SNV NM_009482:c.G634C:p.A212P exonic Utf1 nonsynonymous SNV uc009kgf.1:c.G634C:p.A212P exonic ENSMUSG00000047751 nonsynonymous SNV ENSMUST00000054778:c.G634C:p.A212P 7qF4 NA NA chr7 147130503 TCTxCAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 173 0 0 84.07783 0.432432 0.02 1.144616 42 32 1206 908 60 60 0 0 GG 22.554059 75 0 2122 0 KEEP + Utf1 NO B[a]P_2 chr7 147501924 147501924 T A intergenic "5830411N06Rik(dist=16234),Olfr525(dist=6676)" NA NA intergenic "5830411N06Rik(dist=16225),Olfr525(dist=6676)" NA NA intergenic "ENSMUSG00000054672(dist=16234),ENSMUSG00000061489(dist=6577)" NA NA 7qF4 NA NA chr7 147501924 TCAxGAT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 104 0 0 19.355398 0.163636 0.02 1.212942 46 9 1271 257 60 60 0 0 TT 12.330393 41 0 1109 0 KEEP NA 5830411N06Rik NO B[a]P_2 chr7 148822353 148822353 T G exonic Muc6 unknown UNKNOWN exonic Muc6 nonsynonymous SNV uc009klu.2:c.A7714C:p.S2572R exonic ENSMUSG00000048191 nonsynonymous SNV ENSMUST00000062451:c.A8095C:p.S2699R 7qF5 NA NA chr7 148822353 AACxTGG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 66 0 0 25.331852 0.352941 0.02 -0.298068 22 12 635 292 60 60 0 0 TT 8.422365 28 0 785 0 KEEP - Muc6 NO B[a]P_2 chr7 148823600 148823600 G C exonic Muc6 unknown UNKNOWN exonic Muc6 nonsynonymous SNV uc009klu.2:c.C6467G:p.S2156C exonic ENSMUSG00000048191 nonsynonymous SNV ENSMUST00000062451:c.C6848G:p.S2283C 7qF5 NA NA chr7 148823600 AGAxAGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 242 0 0 73.228718 0.242424 0.02 2.627054 100 32 2835 897 60 60 0 0 GG 25.860356 86 0 2439 0 KEEP - Muc6 NO B[a]P_2 chr7 150154818 150154818 G C intronic Ascl2 NA NA intronic Ascl2 NA NA intronic ENSMUSG00000009248 NA NA 7qF5 NA NA chr7 150154818 AAAxCTG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 171 1 0 121.161719 0.547619 0.02 1.156132 38 46 1071 1244 60 60 0 0 GG 19.241885 64 0 1796 0 KEEP - Ascl2 NO B[a]P_2 chr7 17020200 17020200 C G exonic Zc3h4 nonsynonymous SNV NM_198631:c.C3109G:p.P1037A exonic Zc3h4 nonsynonymous SNV uc009fht.1:c.C1621G:p.P541A exonic ENSMUSG00000059273 nonsynonymous SNV ENSMUST00000079583:c.C765G:p.S255R 7qA2 NA NA chr7 17020200 AAGxCAG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 285 2 0 119.347168 0.425926 0.02 2.622493 62 46 1746 1294 60 60 0 0 CC 40.904919 136 0 3762 0 KEEP + Zc3h4 NO B[a]P_2 chr7 18337580 18337580 C A exonic Ceacam5 nonsynonymous SNV NM_028480:c.C1652A:p.S551Y exonic Ceacam5 nonsynonymous SNV uc009fiz.1:c.C1652A:p.S551Y exonic ENSMUSG00000008789 nonsynonymous SNV ENSMUST00000081907:c.C1652A:p.S551Y 7qA2 NA NA chr7 18337580 CATxCAA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 68 0 0 29.337566 0.387097 0.02 -0.271838 19 12 540 326 60 60 0 0 CC 8.723125 29 0 815 0 KEEP + Ceacam5 YES B[a]P_2 chr7 19600046 19600046 C A exonic Foxa3 nonsynonymous SNV NM_008260:c.G503T:p.R168L exonic Foxa3 nonsynonymous SNV uc009fke.1:c.G503T:p.R168L exonic ENSMUSG00000040891 nonsynonymous SNV ENSMUST00000036018:c.G503T:p.R168L 7qA3 NA NA chr7 19600046 TGCxGGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 268 3 0 196.546136 0.5 0.02 2.327573 72 72 1711 2054 60 60 0 0 CC 31.550929 105 0 2653 0 KEEP - Foxa3 YES B[a]P_2 chr7 20228552 20228552 G C intronic Clptm1 NA NA intronic Clptm1 NA NA intronic ENSMUSG00000002981 NA NA 7qA3 NA NA chr7 20228552 TTAxAAA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739604 0.739671 0.999909 58 0 0 36.552608 0.4375 0.02 -0.280626 18 14 518 394 60 60 0 0 GG 7.218253 24 0 670 0 KEEP - Clptm1 NO B[a]P_2 chr7 27914795 27914795 C A exonic Cyp2f2 nonsynonymous SNV NM_007817:c.C705A:p.F235L exonic Cyp2f2 nonsynonymous SNV uc009fuy.1:c.C705A:p.F235L exonic ENSMUSG00000052974 nonsynonymous SNV ENSMUST00000003100:c.C705A:p.F235L 7qA3 NA NA chr7 27914795 GTTxCGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58286 0.58293 0.999879 53 0 0 27.25231 0.423077 0.02 -0.228003 15 11 439 297 60 60 0 0 CC 6.613305 22 0 608 0 KEEP + Cyp2f2 YES B[a]P_2 chr7 28261461 28261461 C G exonic Sertad3 synonymous SNV NM_133210:c.C300G:p.L100L exonic Sertad3 synonymous SNV uc009fwg.1:c.C300G:p.L100L exonic ENSMUSG00000055200 synonymous SNV ENSMUST00000068641:c.C300G:p.L100L 7qA3 NA NA chr7 28261461 CCTxAGG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 186 0 0 107.729297 0.45977 0.02 1.129671 47 40 1309 1147 60 60 0 0 CC 21.953961 73 0 2093 0 KEEP + Sertad3 NO B[a]P_2 chr7 28275285 28275285 G T UTR3 Sertad1 NA NA UTR3 Sertad1 NA NA UTR3 ENSMUSG00000008384 NA NA 7qA3 NA NA chr7 28275285 TGGxAAG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999998 79 0 0 30.298593 0.342105 0.02 -0.333227 25 13 721 347 60 60 0 0 GG 10.224478 34 0 950 0 KEEP + Sertad1 YES B[a]P_2 chr7 29114985 29114985 C A intronic Supt5 NA NA intronic Supt5h NA NA intronic ENSMUSG00000003435 NA NA 7qA3 NA NA chr7 29114985 AGCxCCA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739568 0.739671 0.99986 62 0 0 35.252528 0.4375 0.02 -0.280578 18 14 498 381 60 60 0 0 CC 5.71478 19 0 527 0 KEEP - Supt5 YES B[a]P_2 chr7 29683179 29683179 T C exonic Actn4 nonsynonymous SNV NM_021895:c.A1787G:p.Q596R exonic Actn4 nonsynonymous SNV uc009gah.1:c.A1787G:p.Q596R exonic ENSMUSG00000054808 nonsynonymous SNV ENSMUST00000068045:c.A1787G:p.Q596R 7qA3 NA NA chr7 29683179 CTCxGGG T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 130 1 0 38.565524 0.277778 0.02 1.055257 52 20 1483 475 60 60 0 0 TT 14.134883 47 0 1278 0 KEEP - Actn4 NO B[a]P_2 chr7 29894770 29894770 G T exonic Ryr1 stopgain SNV NM_009109:c.C1218A:p.Y406X exonic Ryr1 stopgain SNV uc009gao.1:c.C1218A:p.Y406X exonic ENSMUSG00000030592 stopgain SNV ENSMUST00000032813:c.C1218A:p.Y406X 7qB1 NA NA chr7 29894770 GCTxTAT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 104 0 0 48.491599 0.404255 0.02 -0.420905 28 19 779 532 60 60 0 0 GG 13.835009 46 0 1264 0 KEEP - Ryr1 YES B[a]P_2 chr7 30497816 30497816 A T exonic Catsperg2 synonymous SNV NM_029714:c.T1236A:p.A412A exonic "Catsperg1,Catsperg2" synonymous SNV uc012fhg.1:c.T1236A:p.A412A exonic ENSMUSG00000049123 synonymous SNV ENSMUST00000061193:c.T1236A:p.A412A 7qB1 "Score=0.949074;Name=No.100321,chr7:29966344" NA chr7 30497816 ATCxGCG A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 380 0 1 125.954755 0.284974 0.02 3.589844 138 55 3956 1498 60 60 0 0 AA 41.808144 139 0 3846 0 KEEP - Catsperg2 NO B[a]P_2 chr7 30497817 30497817 G A exonic Catsperg2 nonsynonymous SNV NM_029714:c.C1235T:p.A412V exonic "Catsperg1,Catsperg2" nonsynonymous SNV uc012fhg.1:c.C1235T:p.A412V exonic ENSMUSG00000049123 nonsynonymous SNV ENSMUST00000061193:c.C1235T:p.A412V 7qB1 "Score=0.949074;Name=No.100321,chr7:29966344" NA chr7 30497817 TCAxCGA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 383 0 0 125.209649 0.286458 0.02 3.304513 137 55 3838 1489 60 60 0 0 GG 42.414473 141 0 3996 0 KEEP - Catsperg2 NO B[a]P_2 chr7 31247797 31247797 G C ncRNA_exonic Nphs1os NA NA ncRNA_exonic Nphs1as NA NA ncRNA_exonic ENSMUSG00000087009 NA NA 7qB1 NA NA chr7 31247797 GACxTAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 139 0 0 102.141083 0.458824 0.02 1.147163 46 39 1152 1090 60 60 0 0 GG 12.318257 41 0 1009 0 KEEP + Nphs1os NO B[a]P_2 chr7 31500796 31500796 G A exonic Atp4a nonsynonymous SNV NM_018731:c.G821A:p.R274H exonic Atp4a nonsynonymous SNV uc009gfz.1:c.G758A:p.R253H exonic ENSMUSG00000005553 nonsynonymous SNV ENSMUST00000005692:c.G821A:p.R274H 7qB1 NA NA chr7 31500796 ATCxCAC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 142 0 0 37.295174 0.220779 0.02 1.02226 60 17 1360 468 60 60 0 0 GG 15.912698 53 0 1221 0 KEEP - Atp4a NO B[a]P_2 chr7 33112238 33112238 A G exonic Scgb2b12 nonsynonymous SNV NM_001281508:c.T11C:p.I4T intergenic "Abpa29_a7(dist=613364),Abpa29_a7(dist=114322)" NA NA intergenic "ENSMUSG00000091362(dist=103568),ENSMUSG00000090513(dist=6979)" NA NA 7qB1 "Score=0.988839;Name=No.100668,chr7:33653169" NA chr7 33112238 AGTxTCC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 49 0 1 10.129641 1 0.02 -0.02631 0 3 0 87 0 29 0 0 AA 7.648015 36 1 944 30 KEEP NA Scgb2b12 NO B[a]P_2 chr7 46666381 46666381 A C exonic Gm5114 nonsynonymous SNV NM_177890:c.T413G:p.I138S exonic Gm5114 nonsynonymous SNV uc009gkz.1:c.T413G:p.I138S exonic ENSMUSG00000053742 nonsynonymous SNV ENSMUST00000031488:c.T413G:p.I138S 7qB3 "Score=0.96265;Name=No.101122,chr7:39348778" NA chr7 46666381 AAAxTTT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 162 1 17 29.836085 0.181818 0.02 1.118634 63 14 1713 390 60 60 0 0 AA 16.540102 55 0 1493 0 KEEP - Gm5114 NO B[a]P_2 chr7 4710387 4710387 G T exonic Fam71e2 nonsynonymous SNV NM_172895:c.C927A:p.S309R exonic Fam71e2 nonsynonymous SNV uc012ewx.1:c.C927A:p.S309R exonic ENSMUSG00000049952 nonsynonymous SNV ENSMUST00000068750:c.C606A:p.S202R 7qA1 NA NA chr7 4710387 CTGxCTT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 138 0 0 60.394241 0.333333 0.02 1.135846 50 25 1421 692 60 60 0 0 GG 15.340214 51 0 1420 0 KEEP - Fam71e2 YES B[a]P_2 chr7 52942180 52942180 C A exonic Ntn5 nonsynonymous SNV NM_001033356:c.C664A:p.P222T exonic Ntn5 nonsynonymous SNV uc009gwp.1:c.C664A:p.P222T exonic ENSMUSG00000070564 nonsynonymous SNV ENSMUST00000107742:c.C664A:p.P222T 7qB4 NA NA chr7 52942180 CACxCTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 148 2 0 80.926271 0.516667 0.02 1.169146 29 31 831 842 60 60 0 0 CC 21.339007 71 0 1947 0 KEEP - Ntn5 YES B[a]P_2 chr7 53317214 53317214 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53317214 GGGxACA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 135 0 0 23.445739 0.232558 0.02 1.29366 33 10 945 288 70 70 0 0 GG 18.342384 61 0 1708 0 KEEP + Nomo1 NO B[a]P_2 chr7 53318441 53318441 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53318441 ATGxGTG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.999859 49 1 0 33.030752 0.461538 0.02 -0.24556 14 12 400 351 60 60 0 0 GG 5.414035 18 0 498 0 KEEP + Nomo1 NO B[a]P_2 chr7 53323993 53323993 C T intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53323993 TCCxTTG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.692164 0.693668 0.997832 49 0 0 51.014179 0.6 0.02 -0.263091 12 18 345 512 60 60 0 0 CC 4.813261 16 0 459 0 KEEP + Nomo1 NO B[a]P_2 chr7 53362372 53362372 T A exonic Abcc8 synonymous SNV NM_011510:c.A4278T:p.S1426S exonic Abcc8 synonymous SNV uc009gyd.1:c.A2253T:p.S751S exonic ENSMUSG00000040136 synonymous SNV ENSMUST00000033123:c.A4278T:p.S1426S 7qB4 NA NA chr7 53362372 GCGxGAA T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999998 88 4 0 11.218201 0.166667 0.02 -0.34201 25 5 696 147 60 60 0 0 TT 10.225011 34 0 917 0 KEEP - Abcc8 NO B[a]P_2 chr7 53379241 53379241 T C intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53379241 CAGxCCC T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999999 91 0 0 62.242236 0.522727 0.02 -0.385836 21 23 587 645 60 60 0 0 TT 10.526153 35 0 953 0 KEEP - Abcc8 NO B[a]P_2 chr7 53435158 53435158 G A intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53435158 GCTxGGC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09903 0.099721 0.993072 22 0 0 16.038587 0.6 0.02 -0.087659 4 6 106 161 60 60 0 0 GG 3.308892 11 0 311 0 KEEP - Abcc8 NO B[a]P_2 chr7 53517209 53517209 C A intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53517209 GGCxTGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.420782 0.423478 0.993634 37 0 0 35.636329 0.619048 0.02 -0.184143 8 13 226 355 60 60 0 0 CC 3.6099 12 0 343 0 KEEP + Otog YES B[a]P_2 chr7 53521368 53521368 A G intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53521368 TGAxAGG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 39 0 0 21.345663 0.444444 0.02 -0.175389 10 8 280 229 60 60 0 0 AA 3.910533 13 0 367 0 KEEP + Otog NO B[a]P_2 chr7 53543464 53543464 C T exonic Otog synonymous SNV NM_013624:c.C5226T:p.I1742I exonic Otog synonymous SNV uc009gyk.2:c.C5226T:p.I1742I exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000164538:c.C5226T:p.I1742I 7qB4 NA NA chr7 53543464 CATxGAC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.999859 50 2 0 39.033838 0.576923 0.02 -0.227694 11 15 296 396 60 60 0 0 CC 5.407814 18 0 455 0 KEEP + Otog NO B[a]P_2 chr7 53553863 53553863 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553863 ATGxATC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 83 0 0 32.023275 0.40625 0.02 -0.420564 19 13 520 352 60 60 0 0 CC 8.420207 28 0 768 0 KEEP + Otog NO B[a]P_2 chr7 53553865 53553865 T C intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553865 GCAxCCA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 84 0 0 32.71587 0.40625 0.02 -0.420816 19 13 514 359 60 60 0 0 TT 8.72042 29 0 784 0 KEEP + Otog NO B[a]P_2 chr7 53553867 53553867 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553867 ATCxACC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954488 0.954491 0.999997 86 0 0 31.140467 0.387097 0.02 -0.429667 19 12 513 344 60 60 0 0 CC 9.023407 30 0 837 0 KEEP + Otog NO B[a]P_2 chr7 53633192 53633192 C G intronic Myod1 NA NA intronic Myod1 NA NA intronic ENSMUSG00000009471 NA NA 7qB4 NA NA chr7 53633192 GTGxGTA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 54 0 0 36.347357 0.590909 0.02 -0.192749 9 13 193 366 60 60 0 0 CC 5.031958 24 1 567 20 KEEP + Myod1 NO B[a]P_2 chr7 53890970 53890970 A G intronic Sergef NA NA intronic Sergef NA NA intronic ENSMUSG00000030839 NA NA 7qB4 NA NA chr7 53890970 TCAxCAT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.454842 0.457757 0.993634 34 0 0 30.169172 0.55 0.02 -0.192902 9 11 243 309 60 60 0 0 AA 3.607242 12 0 316 0 KEEP - Sergef NO B[a]P_2 chr7 53954822 53954822 T C exonic Saal1 synonymous SNV NM_030233:c.A954G:p.E318E exonic Saal1 synonymous SNV uc009gyu.2:c.A954G:p.E318E exonic ENSMUSG00000006763 synonymous SNV ENSMUST00000143082:c.A954G:p.E318E 7qB4 NA NA chr7 53954822 CTGxTCC T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 123 0 0 20.263168 0.236842 0.02 1.436207 29 9 792 250 60 60 0 0 TT 17.444287 58 0 1591 0 KEEP - Saal1 NO B[a]P_2 chr7 53997787 53997787 G T intronic Saa1 NA NA intronic Saa1 NA NA intronic ENSMUSG00000074115 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:54006945" NA chr7 53997787 GGGxCCT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 58 0 1 16.366841 0.269231 0.02 -0.227824 19 7 537 196 60 60 0 0 GG 6.918436 23 0 646 0 KEEP - Saa1 YES B[a]P_2 chr7 54008756 54008756 T A intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008756 TTTxGGG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 68 0 1 11.786576 0.176471 0.02 -0.298154 28 6 801 158 60 60 0 0 TT 9.023745 30 0 836 0 KEEP + Saa2 NO B[a]P_2 chr7 54008763 54008763 T C intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008763 TCAxGTT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 75 0 1 18.136423 0.225 0.02 -0.350693 31 9 841 231 60 60 0 0 TT 9.006226 30 0 788 0 KEEP + Saa2 NO B[a]P_2 chr7 54009461 54009461 A C exonic Saa2 synonymous SNV NM_011314:c.A351C:p.G117G exonic Saa2 synonymous SNV uc009gzb.2:c.A351C:p.G117G exonic ENSMUSG00000057465 synonymous SNV ENSMUST00000075982:c.A351C:p.G117G 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54009461 TGGxCTG A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 84 4 0 7.783676 0.235294 0.02 -0.175197 13 4 368 99 60 60 0 0 AA 14.435475 48 0 1309 0 KEEP + Saa2 NO B[a]P_2 chr7 54032439 54032439 T C intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54032439 CAGxTTA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 55 0 0 17.909113 0.368421 0.02 -0.175392 12 7 338 200 60 60 0 0 TT 8.420536 28 0 765 0 KEEP - Hps5 NO B[a]P_2 chr7 54070838 54070838 A G intronic Gtf2h1 NA NA intronic Gtf2h1 NA NA intronic ENSMUSG00000006599 NA NA 7qB4 NA NA chr7 54070838 CTCxGGT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 95 1 0 12.781026 0.24 0.02 -0.263074 19 6 545 159 60 60 0 0 AA 14.125583 47 0 1302 0 KEEP + Gtf2h1 NO B[a]P_2 chr7 54104300 54104300 A G intronic Ldha NA NA intronic Ldha NA NA intronic ENSMUSG00000063229 NA NA 7qB4 NA NA chr7 54104300 AGAxTCA A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 38 0 0 14.786949 0.333333 0.02 -0.157837 12 6 333 169 60 60 0 0 AA 5.411271 18 0 474 0 KEEP + Ldha NO B[a]P_2 chr7 54441140 54441140 A T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.T902A:p.L301Q 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441140 CACxGCT A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 232 4 1 30.051706 0.166667 0.02 0.96918 70 14 1998 398 60 57 0 0 AA 29.474809 98 0 2697 0 KEEP - Mrgpra6 NO B[a]P_2 chr7 54441179 54441179 G T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.C863A:p.P288H 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441179 TCAxGTG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 274 11 1 35.290555 0.146341 0.02 2.14547 105 18 2988 489 60 37 0 0 GG 29.167216 97 0 2750 0 KEEP - Mrgpra6 YES B[a]P_2 chr7 54441206 54441206 C T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.G836A:p.S279N 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441206 GCAxTCT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 255 12 4 32.22119 0.129771 0.02 2.084153 114 17 3205 460 60 37 0 0 CC 25.567853 85 0 2393 0 KEEP - Mrgpra6 NO B[a]P_2 chr7 54490319 54490319 C T exonic Mrgpra9 synonymous SNV NM_001177566:c.G966A:p.V322V exonic Mrgpra9 synonymous SNV uc012fla.1:c.G966A:p.V322V exonic ENSMUSG00000074111 synonymous SNV ENSMUST00000098436:c.G963A:p.V321V 7qB4 NA NA chr7 54490319 CTCxACC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 237 1 3 15.72997 0.117647 0.02 1.081391 60 8 1689 226 60 37 0 0 CC 40.294024 134 0 3797 0 KEEP - Mrgpra9 NO B[a]P_2 chr7 54490320 54490320 A G exonic Mrgpra9 nonsynonymous SNV NM_001177566:c.T965C:p.V322A exonic Mrgpra9 nonsynonymous SNV uc012fla.1:c.T965C:p.V322A exonic ENSMUSG00000074111 nonsynonymous SNV ENSMUST00000098436:c.T962C:p.V321A 7qB4 NA NA chr7 54490320 TCCxCCA A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 236 1 3 15.876817 0.115942 0.02 1.171082 61 8 1653 228 60 37 0 0 AA 39.683969 132 0 3533 0 KEEP - Mrgpra9 NO B[a]P_2 chr7 54490333 54490333 C G exonic Mrgpra9 nonsynonymous SNV NM_001177566:c.G952C:p.A318P exonic Mrgpra9 nonsynonymous SNV uc012fla.1:c.G952C:p.A318P exonic ENSMUSG00000074111 nonsynonymous SNV ENSMUST00000098436:c.G949C:p.A317P 7qB4 NA NA chr7 54490333 CAGxTGT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 233 2 3 15.124744 0.114286 0.02 1.063863 62 8 1737 221 60 37 0 0 CC 40.275512 134 0 3744 0 KEEP - Mrgpra9 NO B[a]P_2 chr7 54681932 54681932 T A exonic Mrgpra2a nonsynonymous SNV NM_001172588:c.A947T:p.E316V exonic Mrgpra2a nonsynonymous SNV uc009hag.2:c.A947T:p.E316V exonic ENSMUSG00000039854 nonsynonymous SNV ENSMUST00000060569:c.A869T:p.E290V 7qB4 "Score=0.992523;Name=No.101347,chr7:54709200" NA chr7 54681932 GTCxCAG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 250 0 28 62.541448 0.333333 0.02 1.011193 52 26 1505 717 46 46 0 0 TT 39.094587 130 0 3632 0 KEEP - Mrgpra2a NO B[a]P_2 chr7 54845133 54845133 C A exonic Mrgpra3 synonymous SNV NM_153067:c.G414T:p.L138L exonic Mrgpra3 synonymous SNV uc009haj.2:c.G414T:p.L138L exonic ENSMUSG00000078698 synonymous SNV ENSMUST00000046797:c.G333T:p.L111L 7qB4 "Score=0.935045;Name=No.101352,chr7:54805085" NA chr7 54845133 AGAxAGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 116 1 2 9.781544 0.116279 0.02 -0.420577 38 5 1037 141 60 37 0 0 CC 18.34806 61 0 1713 0 KEEP - Mrgpra3 YES B[a]P_2 chr7 55236551 55236551 A T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.T671A:p.L224H exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.T671A:p.L224H exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.T671A:p.L224H 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236551 AGAxGAA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 176 1 0 21.784846 0.135802 0.02 2.603043 70 11 1987 305 60 60 1 0 AA 18.945799 63 0 1739 0 KEEP - Mrgpra4 NO B[a]P_2 chr7 55236571 55236571 C T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.G651A:p.M217I exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.G651A:p.M217I exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.G651A:p.M217I 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236571 CAGxATG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 216 1 1 22.135044 0.125 0.02 2.089782 84 12 2379 321 60 60 0 0 CC 22.860117 76 0 2127 0 KEEP - Mrgpra4 NO B[a]P_2 chr7 55236580 55236580 C G exonic Mrgpra4 synonymous SNV NM_153524:c.G642C:p.V214V exonic Mrgpra4 synonymous SNV uc009hak.1:c.G642C:p.V214V exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G642C:p.V214V 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236580 GGTxACG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 227 1 2 24.828568 0.125 0.02 2.464591 84 12 2408 348 60 60 0 0 CC 25.568402 85 0 2417 0 KEEP - Mrgpra4 NO B[a]P_2 chr7 55236601 55236601 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G621A:p.T207T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G621A:p.T207T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G621A:p.T207T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236601 TTTxGTC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 252 3 2 28.579405 0.137255 0.02 2.154486 88 14 2320 396 60 60 0 0 CC 27.652936 92 0 2412 0 KEEP - Mrgpra4 NO B[a]P_2 chr7 55236643 55236643 G A exonic Mrgpra4 synonymous SNV NM_153524:c.C579T:p.T193T exonic Mrgpra4 synonymous SNV uc009hak.1:c.C579T:p.T193T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.C579T:p.T193T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236643 CAGxGTG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 283 3 2 27.305219 0.142857 0.02 2.268202 78 13 2215 373 60 60 0 0 GG 34.279803 114 0 3142 0 KEEP - Mrgpra4 NO B[a]P_2 chr7 55236700 55236700 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G522A:p.T174T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G522A:p.T174T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G522A:p.T174T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236700 GTTxGTT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 256 0 0 124.602605 0.522727 0.02 2.38272 42 46 1084 1291 60 60 0 0 CC 33.35385 111 0 2837 0 KEEP - Mrgpra4 NO B[a]P_2 chr7 55276756 55276756 A G exonic Mrgprx1 synonymous SNV NM_207540:c.T612C:p.I204I exonic Mrgprx1 synonymous SNV uc009hal.1:c.T612C:p.I204I exonic ENSMUSG00000070552 synonymous SNV ENSMUST00000094390:c.T612C:p.I204I 7qB4 NA NA chr7 55276756 GAGxATC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.48826 0.490544 0.995343 38 1 0 26.030388 0.434783 0.02 -0.201688 13 10 368 281 60 60 0 0 AA 4.195495 14 0 372 0 KEEP - Mrgprx1 NO B[a]P_2 chr7 55277022 55277022 T C exonic Mrgprx1 nonsynonymous SNV NM_207540:c.A346G:p.I116V exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.A346G:p.I116V exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.A346G:p.I116V 7qB4 NA NA chr7 55277022 GGAxGCT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 81 1 1 35.096588 0.372093 0.02 -0.394437 27 16 744 398 60 60 0 0 TT 8.025024 29 1 785 6 KEEP - Mrgprx1 NO B[a]P_2 chr7 55277271 55277271 C T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.G97A:p.V33I exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.G97A:p.V33I exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.G97A:p.V33I 7qB4 NA NA chr7 55277271 GGAxCAG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800136 0.800245 0.999863 61 0 0 24.413359 0.322581 0.02 -0.306438 21 10 572 281 60 60 0 0 CC 6.015807 20 0 559 0 KEEP - Mrgprx1 NO B[a]P_2 chr7 55277275 55277275 G T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.C93A:p.F31L exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.C93A:p.F31L exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.C93A:p.F31L 7qB4 NA NA chr7 55277275 CAGxAAG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780958 0.78106 0.999869 60 0 0 20.335018 0.3 0.02 -0.298146 21 9 606 240 60 60 0 0 GG 6.316971 21 0 593 0 KEEP - Mrgprx1 YES B[a]P_2 chr7 55277282 55277282 A G exonic Mrgprx1 nonsynonymous SNV NM_207540:c.T86C:p.L29P exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.T86C:p.L29P exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.T86C:p.L29P 7qB4 NA NA chr7 55277282 GACxGGG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717222 0.717315 0.999869 55 0 0 22.254688 0.344828 0.02 -0.271733 19 10 539 256 60 60 0 0 AA 6.315881 21 0 575 0 KEEP - Mrgprx1 NO B[a]P_2 chr7 55424203 55424203 G C exonic Mrgprb5 synonymous SNV NM_207538:c.C153G:p.V51V exonic Mrgprb5 synonymous SNV uc009ham.1:c.C153G:p.V51V exonic ENSMUSG00000070551 synonymous SNV ENSMUST00000094389:c.C153G:p.V51V 7qB4 NA NA chr7 55424203 TAGxACT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.488823 0.490544 0.99649 38 2 0 20.155227 0.380952 0.02 -0.201379 13 8 376 224 60 60 0 0 GG 4.512228 15 0 425 0 KEEP - Mrgprb5 NO B[a]P_2 chr7 55454089 55454089 A G exonic Mrgprb4 synonymous SNV NM_205795:c.T460C:p.L154L exonic Mrgprb4 synonymous SNV uc009han.1:c.T460C:p.L154L exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.T460C:p.L154L 7qB4 NA NA chr7 55454089 ACAxTAG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423422 0.423478 0.999869 49 0 0 6.479692 0.1875 0.02 -0.184155 13 3 365 84 60 60 0 0 AA 6.31582 21 0 574 0 KEEP - Mrgprb4 NO B[a]P_2 chr7 55454369 55454369 C T exonic Mrgprb4 synonymous SNV NM_205795:c.G180A:p.R60R exonic Mrgprb4 synonymous SNV uc009han.1:c.G180A:p.R60R exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.G180A:p.R60R 7qB4 NA NA chr7 55454369 ATTxCTA C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926576 0.92664 0.999931 78 3 0 23.904981 0.322581 0.02 -0.394605 21 10 600 276 60 60 0 0 CC 7.512868 25 0 693 0 KEEP - Mrgprb4 NO B[a]P_2 chr7 55644240 55644240 C T exonic Mrgprb8 synonymous SNV NM_207539:c.C288T:p.I96I exonic Mrgprb8 synonymous SNV uc009hao.2:c.C288T:p.I96I exonic ENSMUSG00000050870 synonymous SNV ENSMUST00000056676:c.C288T:p.I96I 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644240 CATxGAC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 216 1 0 115.700479 0.393162 0.02 2.364884 71 46 1836 1278 60 60 0 0 CC 19.462916 74 1 1902 26 KEEP + Mrgprb8 NO B[a]P_2 chr7 55644712 55644712 C T exonic Mrgprb8 nonsynonymous SNV NM_207539:c.C760T:p.P254S exonic Mrgprb8 nonsynonymous SNV uc009hao.2:c.C760T:p.P254S exonic ENSMUSG00000050870 nonsynonymous SNV ENSMUST00000056676:c.C760T:p.P254S 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644712 ATGxCTT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918107 0.918171 0.999931 80 1 0 69.25318 0.568182 0.02 -0.38586 19 25 546 704 60 60 0 0 CC 7.519446 25 0 691 0 KEEP + Mrgprb8 NO B[a]P_2 chr7 55702613 55702613 T C exonic Mrgprb1 nonsynonymous SNV NM_205810:c.A920G:p.K307R exonic Mrgprb1 nonsynonymous SNV uc009hap.1:c.A920G:p.K307R exonic ENSMUSG00000070547 nonsynonymous SNV ENSMUST00000094384:c.A920G:p.K307R 7qB4 NA NA chr7 55702613 AGCxTGA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 126 0 0 47.45452 0.351852 0.02 1.320009 35 19 975 536 60 60 0 0 TT 19.550963 65 0 1806 0 KEEP - Mrgprb1 NO B[a]P_2 chr7 56085955 56085955 G A UTR3 Csrp3 NA NA UTR3 Csrp3 NA NA UTR3 ENSMUSG00000030470 NA NA 7qB4 NA NA chr7 56085955 CACxTGG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 90 0 0 7.828244 0.142857 0.02 -0.324134 24 4 566 109 60 60 0 0 GG 14.668919 49 0 1134 0 KEEP - Csrp3 NO B[a]P_2 chr7 56133457 56133457 T A exonic E2f8 synonymous SNV NM_001013368:c.A306T:p.S102S exonic E2f8 synonymous SNV uc009haz.2:c.A306T:p.S102S exonic ENSMUSG00000046179 synonymous SNV ENSMUST00000058745:c.A306T:p.S102S 7qB4 NA NA chr7 56133457 TCCxGAT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 166 0 0 101.702191 0.521127 0.02 1.170955 34 37 949 1054 60 60 0 0 TT 23.149536 77 0 2102 0 KEEP - E2f8 NO B[a]P_2 chr7 56803423 56803423 T C exonic Nav2 synonymous SNV NM_175272:c.T3429C:p.S1143S exonic Nav2 synonymous SNV uc009hbm.2:c.T3429C:p.S1143S exonic ENSMUSG00000052512 synonymous SNV ENSMUST00000064395:c.T3429C:p.S1143S 7qB4 NA NA chr7 56803423 CAGxGGG T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 54 0 0 50.660843 0.636364 0.02 -0.288888 12 21 336 501 60 60 0 0 TT 5.405568 18 0 465 0 KEEP + Nav2 NO B[a]P_2 chr7 57484324 57484324 T G intronic Nell1 NA NA intronic Nell1 NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57484324 GTCxGCT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522114 0.522161 0.999909 53 1 0 19.582496 0.333333 0.02 -0.210461 16 8 449 224 60 60 0 0 TT 7.217961 24 0 656 0 KEEP + Nell1 NO B[a]P_2 chr7 57855795 57855795 G A UTR3 4933405O20Rik NA NA UTR3 4933405O20Rik NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57855795 AGAxAGT G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.664267 0.668523 0.993634 44 0 0 44.16701 0.551724 0.02 -0.254322 13 16 375 452 60 60 0 0 GG 3.609479 12 0 337 0 KEEP + 4933405O20Rik NO B[a]P_2 chr7 59116908 59116908 G A exonic Fancf synonymous SNV NM_001115087:c.C717T:p.A239A exonic Fancf synonymous SNV uc012flg.1:c.C717T:p.A239A exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.C717T:p.A239A 7qB5 NA NA chr7 59116908 CTTxGCT G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 139 4 0 98.440717 0.506667 0.02 1.137226 37 38 1043 1030 60 60 0 0 GG 13.52681 45 0 1245 0 KEEP - Fancf NO B[a]P_2 chr7 59117508 59117508 A G exonic Fancf synonymous SNV NM_001115087:c.T117C:p.R39R exonic Fancf synonymous SNV uc012flg.1:c.T117C:p.R39R exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.T117C:p.R39R 7qB5 NA NA chr7 59117508 ATAxCGC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 78 0 0 27.494737 0.44 0.02 -0.219175 14 11 391 297 60 60 0 0 AA 11.67874 43 1 1166 11 KEEP - Fancf NO B[a]P_2 chr7 59117648 59117648 C T upstream Fancf NA NA UTR5 Gas2 NA NA UTR5 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59117648 CATxCCG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 61 0 0 13.456322 0.3 0.02 -0.18377 14 6 384 159 60 60 0 0 CC 11.067771 37 0 1022 0 KEEP + Fancf NO B[a]P_2 chr7 59220735 59220735 G A intronic Gas2 NA NA UTR3 Gas2 NA NA UTR3 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59220735 TGAxCCT G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999998 63 0 0 11.313087 0.294118 0.02 -0.184141 12 5 338 134 60 60 0 0 GG 10.223343 34 0 926 0 KEEP + Gas2 NO B[a]P_2 chr7 63027927 63027927 C G exonic Siglech nonsynonymous SNV NM_178706:c.C913G:p.H305D exonic Siglech nonsynonymous SNV uc009hdb.2:c.C865G:p.H289D exonic ENSMUSG00000051504 nonsynonymous SNV ENSMUST00000094360:c.C865G:p.H289D 7qB5 NA NA chr7 63027927 GCAxACG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120422 0.120436 0.999879 40 0 0 7.232612 0.272727 0.02 -0.096464 8 3 225 86 60 60 0 0 CC 6.617305 22 0 614 0 KEEP + Siglech NO B[a]P_2 chr7 63068956 63068956 A T intronic Tubgcp5 NA NA intronic Tubgcp5 NA NA intronic ENSMUSG00000033790 NA NA 7qB5 NA NA chr7 63068956 TGCxGGC A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 106 2 0 47.074401 0.439024 0.02 -0.35955 23 18 663 507 60 60 0 0 AA 14.738777 49 0 1371 0 KEEP + Tubgcp5 NO B[a]P_2 chr7 63147515 63147515 G C intronic Cyfip1 NA NA exonic Cyfip1 nonsynonymous SNV uc009hdj.1:c.G1267C:p.G423R exonic ENSMUSG00000030447 nonsynonymous SNV ENSMUST00000168271:c.G1267C:p.G423R 7qB5 NA NA chr7 63147515 ATCxGAG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 88 3 0 28.982824 0.351351 0.02 -0.36802 24 13 640 332 60 60 0 0 GG 10.824513 36 0 965 0 KEEP + Cyfip1 NO B[a]P_2 chr7 63148642 63148642 C T intronic Cyfip1 NA NA intronic Cyfip1 NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63148642 CTCxCTG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076759 0.077336 0.99254 20 0 0 7.443363 0.333333 0.02 -0.07893 6 3 174 85 60 60 0 0 CC 2.70719 9 0 252 0 KEEP + Cyfip1 NO B[a]P_2 chr7 63327733 63327733 A G exonic Herc2 synonymous SNV NM_010418:c.A258G:p.E86E exonic "Herc2,rjs" synonymous SNV uc009hdw.1:c.A258G:p.E86E exonic ENSMUSG00000030451 synonymous SNV ENSMUST00000041015:c.A144G:p.E48E 7qB5 NA NA chr7 63327733 AGAxGAG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78105 0.78106 0.999988 71 0 0 58.587221 0.617647 0.02 -0.298135 13 21 370 584 60 60 0 0 AA 8.121873 27 0 763 0 KEEP + Herc2 NO B[a]P_2 chr7 63440089 63440089 T C intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440089 TGGxTGT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851873 0.851984 0.999869 64 0 0 51.58071 0.540541 0.02 -0.332484 17 20 469 532 60 60 0 0 TT 6.315743 21 0 572 0 KEEP + Herc2 NO B[a]P_2 chr7 63440091 63440091 G A intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440091 GTTxTGA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835601 0.835716 0.999863 62 0 0 48.843118 0.527778 0.02 -0.324397 17 19 482 506 60 60 0 0 GG 6.015478 20 0 556 0 KEEP + Herc2 NO B[a]P_2 chr7 63585644 63585644 G A intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63585644 ATTxAGC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077287 0.077336 0.999366 31 0 0 7.243323 0.333333 0.02 -0.078925 6 3 171 83 60 60 0 0 GG 5.113871 17 0 485 0 KEEP + Oca2 NO B[a]P_2 chr7 63612621 63612621 C T intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63612621 TTAxTCG C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 63 2 0 38.688104 0.608696 0.02 -0.210466 9 14 263 387 60 60 0 0 CC 7.520355 25 0 710 0 KEEP + Oca2 NO B[a]P_2 chr7 64677117 64677117 G A exonic Gabra5 synonymous SNV NM_176942:c.C720T:p.S240S exonic Gabra5 synonymous SNV uc009heb.1:c.C720T:p.S240S exonic ENSMUSG00000055078 synonymous SNV ENSMUST00000068456:c.C720T:p.S240S 7qC NA NA chr7 64677117 TGTxCTG G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693593 0.693668 0.999892 65 0 0 44.988131 0.566667 0.02 -0.263066 13 17 380 458 60 60 0 0 GG 6.919216 23 0 662 0 KEEP - Gabra5 NO B[a]P_2 chr7 64708281 64708281 C T intronic Gabra5 NA NA intronic Gabra5 NA NA intronic ENSMUSG00000055078 NA NA 7qC NA NA chr7 64708281 ACAxGCC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423426 0.423478 0.999879 46 3 0 14.116956 0.315789 0.02 -0.184133 13 6 352 164 60 60 0 0 CC 6.614702 22 0 581 0 KEEP - Gabra5 NO B[a]P_2 chr7 71036541 71036541 G C exonic Klf13 nonsynonymous SNV NM_021366:c.C723G:p.D241E exonic Klf13 nonsynonymous SNV uc009hfm.2:c.C216G:p.D72E exonic ENSMUSG00000052040 nonsynonymous SNV ENSMUST00000008043:c.C216G:p.D72E 7qC NA NA chr7 71036541 GTGxTCG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 95 2 0 28.561497 0.26087 0.02 -0.403385 34 12 958 343 60 60 0 0 GG 11.695632 39 0 1030 0 KEEP - Klf13 NO B[a]P_2 chr7 73985513 73985513 C A intronic Adamts17 NA NA intronic Adamts17 NA NA intronic ENSMUSG00000058145 NA NA 7qC NA NA chr7 73985513 GCCxGCG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 100 0 0 52.547822 0.4 0.02 -0.437824 30 20 741 576 60 60 0 0 CC 11.672531 39 0 950 0 KEEP + Adamts17 YES B[a]P_2 chr7 74904456 74904456 G C exonic Synm nonsynonymous SNV NM_183312:c.C59G:p.A20G exonic Synm nonsynonymous SNV uc009hiv.1:c.C59G:p.A20G exonic ENSMUSG00000030554 nonsynonymous SNV ENSMUST00000051389:c.C59G:p.A20G 7qC NA NA chr7 74904456 CGGxCGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 137 0 0 28.193437 0.19403 0.02 1.206 54 13 1541 363 60 60 0 0 GG 16.179349 54 0 1474 0 KEEP - Synm NO B[a]P_2 chr7 78495370 78495370 G T intergenic "B130024G19Rik(dist=939338),Mctp2(dist=727346)" NA NA intergenic "AK020061(dist=126075),AK076715(dist=597043)" NA NA UTR3 ENSMUSG00000070511 NA NA 7qD1 NA NA chr7 78495370 TCCxCTT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739604 0.739671 0.999909 63 0 0 37.961609 0.4375 0.02 -0.280444 18 14 433 408 60 60 0 0 GG 7.20917 24 0 581 0 KEEP NA B130024G19Rik YES B[a]P_2 chr7 79818449 79818449 C A intergenic "Mctp2(dist=366968),Gm6567(dist=424189)" NA NA intergenic "Mctp2(dist=366968),DQ546052(dist=430808)" NA NA exonic ENSMUSG00000070035 nonsynonymous SNV ENSMUST00000071888:c.C746A:p.A249D 7qD1 NA NA chr7 79818449 TGGxCAA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 220 0 18 169.354894 0.563636 0.02 2.622787 48 62 1347 1725 60 60 0 0 CC 24.362589 81 0 2247 0 KEEP NA Mctp2 YES B[a]P_2 chr7 80614516 80614516 C T exonic Chd2 synonymous SNV NM_001081345:c.G3165A:p.V1055V exonic Chd2 synonymous SNV uc009hrd.2:c.G3165A:p.V1055V exonic ENSMUSG00000078671 synonymous SNV ENSMUST00000169922:c.G3165A:p.V1055V 7qD1 NA NA chr7 80614516 CTCxACT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 138 0 0 58.375914 0.403509 0.02 1.39236 34 23 956 641 60 60 0 0 CC 20.154551 67 0 1902 0 KEEP - Chd2 NO B[a]P_2 chr7 82293966 82293966 A C exonic Sv2b nonsynonymous SNV NM_001109753:c.T793G:p.F265V exonic Sv2b nonsynonymous SNV uc009hwk.2:c.T793G:p.F265V exonic ENSMUSG00000053025 nonsynonymous SNV ENSMUST00000085164:c.T793G:p.F265V 7qD2 NA NA chr7 82293966 TGAxGCC A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 128 0 0 25.631336 0.387097 0.02 -0.271754 19 12 542 289 60 60 0 0 AA 19.851069 66 0 1830 0 KEEP - Sv2b NO B[a]P_2 chr7 86870557 86870557 G A exonic Plin1 synonymous SNV NM_001113471:c.C729T:p.G243G exonic Plin1 synonymous SNV uc009hyw.1:c.C513T:p.G171G exonic ENSMUSG00000030546 synonymous SNV ENSMUST00000032762:c.C729T:p.G243G 7qD3 NA NA chr7 86870557 GTGxCCC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 151 0 0 76.209836 0.447761 0.02 1.206459 37 30 1029 819 60 60 0 0 GG 18.644797 62 0 1698 0 KEEP - Plin1 NO B[a]P_2 chr7 88169958 88169958 G C exonic Zfp592 nonsynonymous SNV NM_178707:c.G1783C:p.A595P exonic Zfp592 nonsynonymous SNV uc009ibp.2:c.G1783C:p.A595P exonic ENSMUSG00000005621 nonsynonymous SNV ENSMUST00000005761:c.G1783C:p.A595P 7qD3 NA NA chr7 88169958 GACxCGT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 114 0 0 81.096433 0.54717 0.02 1.320291 24 29 580 831 60 60 0 0 GG 15.021997 50 0 1243 0 KEEP + Zfp592 NO B[a]P_2 chr7 93874542 93874542 C G exonic Folh1 nonsynonymous SNV NM_001159706:c.G1646C:p.R549P exonic Folh1 nonsynonymous SNV uc012fop.1:c.G1646C:p.R549P exonic ENSMUSG00000001773 nonsynonymous SNV ENSMUST00000107271:c.G1646C:p.R549P 7qD3 NA NA chr7 93874542 CCTxGAA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 74 0 0 21.387085 0.290323 0.02 -0.271706 22 9 555 252 60 60 0 0 CC 11.112788 37 0 934 0 KEEP - Folh1 NO B[a]P_2 chr7 95175096 95175096 T A exonic Grm5 nonsynonymous SNV NM_001081414:c.T1307A:p.L436H exonic Grm5 nonsynonymous SNV uc009ifr.2:c.T1307A:p.L436H exonic ENSMUSG00000049583 nonsynonymous SNV ENSMUST00000061910:c.T1409A:p.L470H 7qE1 NA NA chr7 95175096 AACxTTT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.941741 0.941741 1 104 0 0 23.945466 0.234043 0.02 -0.412132 36 11 1016 298 60 60 0 0 TT 14.738675 49 0 1368 0 KEEP + Grm5 NO B[a]P_2 chr7 9758894 9758894 T G intronic Vmn2r44 NA NA intronic Vmn2r44 NA NA intronic ENSMUSG00000091178 NA NA 7qA1 "Score=0.971577;Name=No.96654,chr7:7479578" NA chr7 9758894 AAAxCAG T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 450 0 218 15.066182 0.087912 0.02 0.995618 83 8 2267 230 53 37 0 0 TT 74.551626 248 0 6692 0 KEEP + Vmn2r44 NO B[a]P_2 chr8 10502936 10502936 C A exonic Myo16 nonsynonymous SNV NM_001081397:c.C2973A:p.S991R exonic Myo16 nonsynonymous SNV uc012fzh.1:c.C2805A:p.S935R exonic ENSMUSG00000039057 nonsynonymous SNV ENSMUST00000042103:c.C2973A:p.S991R 8qA1.1 NA NA chr8 10502936 TAGxAAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.999859 50 0 0 11.053592 0.208333 0.02 -0.210476 19 5 549 140 60 60 0 0 CC 5.414803 18 0 514 0 KEEP + Myo16 YES B[a]P_2 chr8 106660739 106660739 C A intronic Cdh5 NA NA intronic Cdh5 NA NA intronic ENSMUSG00000031871 NA NA 8qD3 NA NA chr8 106660739 AGGxTAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.387315 0.387407 0.999763 67 2 0 35.975178 0.65 0.02 -0.175343 7 13 194 354 60 60 0 0 CC 10.227611 34 0 970 0 KEEP + Cdh5 YES B[a]P_2 chr8 106954403 106954403 C A exonic Dync1li2 synonymous SNV NM_001013380:c.G597T:p.G199G exonic Dync1li2 synonymous SNV uc009nao.2:c.G597T:p.G199G exonic ENSMUSG00000035770 synonymous SNV ENSMUST00000041769:c.G597T:p.G199G 8qD3 NA NA chr8 106954403 AGGxCCT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.818459 0.818465 0.999993 82 0 0 42.789401 0.472222 0.02 -0.315644 19 17 545 455 60 60 0 0 CC 12.626302 42 0 1149 0 KEEP - Dync1li2 YES B[a]P_2 chr8 107119035 107119035 G T UTR3 Pdp2 NA NA UTR3 Pdp2 NA NA UTR3 ENSMUSG00000048371 NA NA 8qD3 NA NA chr8 107119035 GGTxCCA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 49 0 0 23.128571 0.409091 0.02 -0.192924 13 9 370 253 60 60 0 0 GG 7.520066 25 0 704 0 KEEP + Pdp2 YES B[a]P_2 chr8 107140873 107140873 A G exonic Cdh16 synonymous SNV NM_001252627:c.T1800C:p.P600P exonic Cdh16 synonymous SNV uc009nay.1:c.T1800C:p.P600P exonic ENSMUSG00000031881 synonymous SNV ENSMUST00000163783:c.T1800C:p.P600P 8qD3 NA NA chr8 107140873 TCCxGGC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 94 0 0 68.989858 0.577778 0.02 -0.403213 19 26 526 699 60 60 0 0 AA 11.428631 38 0 1047 0 KEEP - Cdh16 NO B[a]P_2 chr8 107263568 107263568 C A exonic Ces2a nonsynonymous SNV NM_001190330:c.C1097A:p.P366Q exonic Ces2a nonsynonymous SNV uc012giz.1:c.C1097A:p.P366Q exonic ENSMUSG00000055730 nonsynonymous SNV ENSMUST00000164182:c.C1097A:p.P366Q 8qD3 "Score=0.895228;Name=No.104258,chr8:107200029" NA chr8 107263568 ACCxAGA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119538 0.120436 0.99254 37 0 13 6.432243 0.272727 0.02 -0.096454 8 3 232 78 36 36 0 0 CC 6.015791 20 0 561 0 KEEP + Ces2a YES B[a]P_2 chr8 108141181 108141181 G C intronic Fam65a NA NA intronic "Agrp,Fam65a" NA NA intronic ENSMUSG00000038604 NA NA 8qD3 NA NA chr8 108141181 TTTxGTG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 81 0 0 48.130875 0.558824 0.02 -0.297793 15 19 405 492 60 60 0 0 GG 12.032385 40 0 1132 0 KEEP + Fam65a NO B[a]P_2 chr8 108228350 108228350 C G exonic Enkd1 nonsynonymous SNV NM_198299:c.G644C:p.R215P exonic E130303B06Rik nonsynonymous SNV uc009ndy.1:c.G197C:p.R66P exonic ENSMUSG00000013155 nonsynonymous SNV ENSMUST00000013299:c.G644C:p.R215P 8qD3 NA NA chr8 108228350 TGGxGCC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967422 0.967425 0.999997 91 0 0 46.430294 0.346154 0.02 1.436497 34 18 844 524 60 60 0 0 CC 8.349652 28 0 661 0 KEEP - Enkd1 NO B[a]P_2 chr8 108474062 108474062 G C intronic Slc12a4 NA NA ncRNA_intronic Kcc1 NA NA intronic ENSMUSG00000017765 NA NA 8qD3 NA NA chr8 108474062 ACAxAAA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036532 0.036766 0.993634 18 0 0 7.723997 0.5 0.02 -0.052615 3 3 87 81 60 60 0 0 GG 3.609934 12 0 343 0 KEEP - Slc12a4 NO B[a]P_2 chr8 108789437 108789437 G C exonic Smpd3 nonsynonymous SNV NM_021491:c.C383G:p.T128R exonic Smpd3 nonsynonymous SNV uc009nfx.1:c.C383G:p.T128R exonic ENSMUSG00000031906 nonsynonymous SNV ENSMUST00000067512:c.C383G:p.T128R 8qD3 NA NA chr8 108789437 GCCxTGG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 119 0 0 92.928392 0.653061 0.02 -0.429622 17 32 436 914 60 60 0 0 GG 19.235686 64 0 1622 0 KEEP - Smpd3 NO B[a]P_2 chr8 112152651 112152651 T A exonic Pkd1l3 nonsynonymous SNV NM_001039700:c.T2150A:p.L717H exonic Pkd1l3 nonsynonymous SNV uc009nit.1:c.T2210A:p.L737H exonic ENSMUSG00000048827 nonsynonymous SNV ENSMUST00000057344:c.T2210A:p.L737H 8qD3 NA NA chr8 112152651 CTCxTGG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 62 0 0 24.057407 0.344828 0.02 -0.254299 19 10 537 274 60 60 0 0 TT 8.12143 27 0 755 0 KEEP + Pkd1l3 NO B[a]P_2 chr8 112519999 112519999 C T exonic Tat synonymous SNV NM_146214:c.C792T:p.A264A exonic Tat synonymous SNV uc009njs.2:c.C792T:p.A264A exonic ENSMUSG00000001670 synonymous SNV ENSMUST00000001720:c.C792T:p.A264A 8qD3 NA NA chr8 112519999 GGCxACC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 73 0 0 25.363298 0.4 0.02 -0.22796 15 10 408 279 60 60 0 0 CC 10.216065 34 0 956 0 KEEP + Tat NO B[a]P_2 chr8 114010837 114010837 T A exonic Wdr59 synonymous SNV NM_001170742:c.A945T:p.R315R exonic Wdr59 synonymous SNV uc009nmh.2:c.A945T:p.R315R exonic ENSMUSG00000031959 synonymous SNV ENSMUST00000034437:c.A945T:p.R315R 8qE1 NA NA chr8 114010837 CACxCGC T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 235 0 0 81.799291 0.365591 0.02 0.781893 59 34 1685 921 60 60 0 0 TT 28.875848 96 0 2685 0 KEEP - Wdr59 NO B[a]P_2 chr8 122547624 122547624 C A intronic Crispld2 NA NA intronic Crispld2 NA NA intronic "ENSMUSG00000031825,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 122547624 TCTxTGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 196 0 0 72.421023 0.432836 0.02 1.107703 38 29 1099 785 60 60 0 0 CC 29.481844 98 0 2825 0 KEEP + Crispld2 YES B[a]P_2 chr8 124882412 124882412 G A exonic Trhr2 synonymous SNV NM_133202:c.C732T:p.S244S exonic Trhr2 synonymous SNV uc009nsk.1:c.C732T:p.S244S exonic ENSMUSG00000039079 synonymous SNV ENSMUST00000044123:c.C732T:p.S244S 8qE1 NA NA chr8 124882412 TGAxCTC G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 108 0 0 26.587058 0.314286 0.02 -0.30691 24 11 675 308 60 60 0 0 GG 16.244146 54 0 1539 0 KEEP - Trhr2 NO B[a]P_2 chr8 125010350 125010350 T A exonic Piezo1 nonsynonymous SNV NM_001037298:c.A5570T:p.H1857L exonic Fam38a nonsynonymous SNV uc009ntb.2:c.A2513T:p.H838L exonic ENSMUSG00000014444 nonsynonymous SNV ENSMUST00000059683:c.A2909T:p.H970L 8qE1 NA NA chr8 125010350 ATGxGGT T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999997 82 0 0 7.552939 0.088889 0.02 -0.394597 41 4 1133 115 60 60 0 0 TT 9.32309 31 0 841 0 KEEP - Piezo1 NO B[a]P_2 chr8 12615180 12615180 C A exonic Tubgcp3 synonymous SNV NM_198031:c.G2676T:p.R892R exonic Tubgcp3 synonymous SNV uc009kwd.1:c.G2676T:p.R892R exonic ENSMUSG00000000759 synonymous SNV ENSMUST00000000776:c.G2676T:p.R892R 8qA1.1 NA NA chr8 12615180 GACxCGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522093 0.522161 0.999869 52 0 0 22.697912 0.375 0.02 -0.210462 15 9 423 253 60 60 0 0 CC 6.316524 21 0 585 0 KEEP - Tubgcp3 YES B[a]P_2 chr8 127129697 127129697 A T exonic Capn9 synonymous SNV NM_023709:c.A1374T:p.R458R exonic Capn9 synonymous SNV uc009nxf.2:c.A1374T:p.R458R exonic ENSMUSG00000031981 synonymous SNV ENSMUST00000093033:c.A1374T:p.R458R 8qE2 NA NA chr8 127129697 GCGxTTC A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 93 0 0 70.121156 0.541667 0.02 -0.420896 22 26 605 721 60 60 0 0 AA 11.728545 39 0 1055 0 KEEP + Capn9 NO B[a]P_2 chr8 15108386 15108386 C G exonic Myom2 synonymous SNV NM_008664:c.C2337G:p.S779S exonic Myom2 synonymous SNV uc009kzm.2:c.C2337G:p.S779S exonic ENSMUSG00000031461 synonymous SNV ENSMUST00000033842:c.C2337G:p.S779S 8qA1.1 NA NA chr8 15108386 CTCxTTG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 86 1 0 57.662974 0.6 0.02 -0.349974 16 24 432 579 60 60 0 0 CC 12.632927 42 0 1169 0 KEEP + Myom2 NO B[a]P_2 chr8 16199967 16199967 A G exonic Csmd1 nonsynonymous SNV NM_053171:c.T2996C:p.L999P exonic Csmd1 nonsynonymous SNV uc009kzp.1:c.T2996C:p.L999P exonic ENSMUSG00000060924 nonsynonymous SNV ENSMUST00000110789:c.T1901C:p.L634P 8qA1.1 NA NA chr8 16199967 GTGxGCC A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 94 0 0 8.135247 0.129032 0.02 -0.271865 27 4 775 114 60 60 0 0 AA 15.641661 52 0 1462 0 KEEP - Csmd1 NO B[a]P_2 chr8 23973301 23973301 A G intronic Kat6a NA NA intronic Myst3 NA NA intronic ENSMUSG00000031540 NA NA 8qA2 NA NA chr8 23973301 CACxGGG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 70 0 0 42.461395 0.551724 0.02 -0.254266 13 16 373 435 60 60 0 0 AA 10.226731 34 0 948 0 KEEP + Kat6a NO B[a]P_2 chr8 33068984 33068984 C A intergenic "Nrg1(dist=40309),Gm8179(dist=193383)" NA NA exonic Nrg1 nonsynonymous SNV uc009ljp.1:c.G400T:p.D134Y exonic ENSMUSG00000062991 nonsynonymous SNV ENSMUST00000080782:c.G400T:p.D134Y 8qA3 NA NA chr8 33068984 TACxGTT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 78 0 0 16.304017 0.25 0.02 -0.245498 21 7 571 198 60 60 0 0 CC 11.724732 39 0 1037 0 KEEP - Nrg1 YES B[a]P_2 chr8 3380494 3380494 C A exonic A430078G23Rik synonymous SNV NM_001033378:c.C366A:p.S122S exonic A430078G23Rik synonymous SNV uc009krg.2:c.C183A:p.S61S exonic ENSMUSG00000074497 synonymous SNV ENSMUST00000098965:c.C366A:p.S122S 8qA1.1 NA NA chr8 3380494 GTCxCGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196294 0.196312 0.999909 41 0 0 6.583034 0.214286 0.02 -0.122043 11 3 294 83 60 60 0 0 CC 7.218131 24 0 663 0 KEEP + A430078G23Rik YES B[a]P_2 chr8 3852821 3852821 T A exonic Cd209e nonsynonymous SNV NM_130905:c.A284T:p.Q95L exonic Cd209e nonsynonymous SNV uc009kss.1:c.A284T:p.Q95L exonic ENSMUSG00000040197 nonsynonymous SNV ENSMUST00000033888:c.A284T:p.Q95L 8qA1.1 NA NA chr8 3852821 CGTxGTG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 77 0 0 22.525333 0.294118 0.02 -0.306865 24 10 675 267 60 60 0 0 TT 10.226228 34 0 936 0 KEEP - Cd209e NO B[a]P_2 chr8 4250604 4250604 G C exonic Gm14378 nonsynonymous SNV NM_001195258:c.G781C:p.G261R exonic Gm14378 nonsynonymous SNV uc012fzc.1:c.G781C:p.G261R exonic ENSMUSG00000089736 nonsynonymous SNV ENSMUST00000110993:c.G781C:p.G261R 8qA1.1 NA NA chr8 4250604 CTTxGTC G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 208 2 0 44.380661 0.3125 0.02 1.331286 44 20 1256 521 60 60 0 0 GG 33.977471 113 0 3150 0 KEEP + Gm14378 NO B[a]P_2 chr8 49759886 49759886 G T exonic Tenm3 nonsynonymous SNV NM_001145937:c.C110A:p.T37K exonic Odz3 nonsynonymous SNV uc009lrr.2:c.C110A:p.T37K exonic ENSMUSG00000031561 nonsynonymous SNV ENSMUST00000033965:c.C110A:p.T37K 8qB1.2 NA NA chr8 49759886 TGCxTGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 116 0 0 60.156901 0.5 0.02 -0.394434 22 22 555 629 60 60 0 0 GG 17.425025 58 0 1426 0 KEEP - Tenm3 YES B[a]P_2 chr8 49759889 49759889 G C exonic Tenm3 nonsynonymous SNV NM_001145937:c.C107G:p.P36R exonic Odz3 nonsynonymous SNV uc009lrr.2:c.C107G:p.P36R exonic ENSMUSG00000031561 nonsynonymous SNV ENSMUST00000033965:c.C107G:p.P36R 8qB1.2 NA NA chr8 49759889 GTGxGGA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 114 0 0 53.361651 0.478261 0.02 -0.411738 24 22 657 567 60 60 0 0 GG 17.13617 57 0 1559 0 KEEP - Tenm3 NO B[a]P_2 chr8 58518550 58518550 G C exonic Glra3 nonsynonymous SNV NM_080438:c.G487C:p.D163H exonic Glra3 nonsynonymous SNV uc009lsn.1:c.G487C:p.D163H exonic ENSMUSG00000038257 nonsynonymous SNV ENSMUST00000000275:c.G487C:p.D163H 8qB2 NA NA chr8 58518550 ACAxATA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 109 1 0 18.262675 0.235294 0.02 -0.298176 26 8 753 225 60 60 0 0 GG 16.54573 55 0 1581 0 KEEP + Glra3 NO B[a]P_2 chr8 72405981 72405981 G T exonic Cilp2 nonsynonymous SNV NM_026818:c.C2265A:p.F755L exonic Cilp2 nonsynonymous SNV uc009lyb.2:c.C2265A:p.F755L exonic ENSMUSG00000044006 nonsynonymous SNV ENSMUST00000057831:c.C2265A:p.F755L 8qB3.3 NA NA chr8 72405981 CGCxAAA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353932 0.353947 0.999957 56 0 0 6.3353 0.157895 0.02 -0.166536 16 3 429 85 60 60 0 0 GG 7.817618 26 0 704 0 KEEP - Cilp2 YES B[a]P_2 chr8 72406763 72406763 G C exonic Cilp2 nonsynonymous SNV NM_026818:c.C1483G:p.L495V exonic Cilp2 nonsynonymous SNV uc009lyb.2:c.C1483G:p.L495V exonic ENSMUSG00000044006 nonsynonymous SNV ENSMUST00000057831:c.C1483G:p.L495V 8qB3.3 NA NA chr8 72406763 GCAxTAT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967423 0.967425 0.999998 97 0 0 65.675899 0.510204 0.02 1.248112 24 25 646 685 60 60 0 0 GG 10.223185 34 0 916 0 KEEP - Cilp2 NO B[a]P_2 chr8 74086522 74086522 C G exonic Nxnl1 nonsynonymous SNV NM_145598:c.G640C:p.A214P exonic Nxnl1 nonsynonymous SNV uc012gfu.1:c.G640C:p.A214P exonic ENSMUSG00000034829 nonsynonymous SNV ENSMUST00000048243:c.G640C:p.A214P 8qB3.3 NA NA chr8 74086522 CCGxCCT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 140 2 0 23.062753 0.15493 0.02 1.17099 60 11 1678 311 60 60 0 0 CC 14.973532 50 0 1344 0 KEEP - Nxnl1 NO B[a]P_2 chr8 74381159 74381159 C G intergenic "Fcho1(dist=131579),Zfp709(dist=24808)" NA NA intergenic "AK142664(dist=75938),Zfp709(dist=24808)" NA NA upstream ENSMUSG00000091391 NA NA 8qB3.3 "Score=0.985269;Name=No.104213,chr8:73657058" NA chr8 74381159 TGTxATC C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 209 0 35 21.916623 0.139241 0.02 1.10097 68 11 1911 305 60 46 0 0 CC 30.974514 103 0 2924 0 KEEP NA Fcho1 NO B[a]P_2 chr8 87440644 87440644 G C exonic Mast1 nonsynonymous SNV NM_019945:c.C2587G:p.P863A exonic Mast1 nonsynonymous SNV uc009mod.1:c.C865G:p.P289A exonic ENSMUSG00000053693 nonsynonymous SNV ENSMUST00000109741:c.C2587G:p.P863A 8qC3 NA NA chr8 87440644 CTGxATG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053735 0.054137 0.99257 19 0 0 18.1069 0.75 0.02 -0.07016 2 6 58 172 60 60 0 0 GG 2.400813 8 0 213 0 KEEP + Mast1 NO B[a]P_2 chr8 87533588 87533588 A T exonic Best2 nonsynonymous SNV NM_001130194:c.T844A:p.F282I exonic Best2 nonsynonymous SNV uc009mov.1:c.T844A:p.F282I exonic ENSMUSG00000052819 nonsynonymous SNV ENSMUST00000059072:c.T844A:p.F282I 8qC3 NA NA chr8 87533588 AGAxGAA A T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 48 0 0 14.368601 0.352941 0.02 -0.149075 11 6 313 163 60 60 0 0 AA 7.820338 26 0 725 0 KEEP - Best2 NO B[a]P_2 chr8 90842240 90842240 A G intronic Adcy7 NA NA intronic Adcy7 NA NA intronic ENSMUSG00000031659 NA NA 8qC3 NA NA chr8 90842240 GGTxGGT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 89 0 0 25.632573 0.275 0.02 -0.35075 29 11 810 306 60 60 0 0 AA 11.729568 39 0 1073 0 KEEP + Adcy7 NO B[a]P_2 chr8 93610876 93610876 C A intronic Rbl2 NA NA intronic Rbl2 NA NA intronic ENSMUSG00000031666 NA NA 8qC5 NA NA chr8 93610876 TCCxCAT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693605 0.693668 0.999909 58 1 0 27.185063 0.366667 0.02 -0.263084 19 11 545 305 60 60 0 0 CC 7.216374 24 0 660 0 KEEP + Rbl2 YES B[a]P_2 chr8 95860990 95860990 G T intronic Ces1g NA NA intronic Ces1g NA NA intronic ENSMUSG00000057074 NA NA 8qC5 NA NA chr8 95860990 CCCxGAA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 80 2 0 9.16516 0.2 0.02 -0.175269 16 4 396 116 60 60 0 0 GG 11.421339 38 0 980 0 KEEP - Ces1g YES B[a]P_2 chr8 97534458 97534458 C A exonic Gpr56 nonsynonymous SNV NM_001198894:c.C1612A:p.P538T exonic Gpr56 nonsynonymous SNV uc009mxo.2:c.C1612A:p.P538T exonic ENSMUSG00000031785 nonsynonymous SNV ENSMUST00000093271:c.C1612A:p.P538T 8qD1 NA NA chr8 97534458 GGCxCCA C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 275 0 0 85.569811 0.376344 0.02 0.880584 58 35 1608 956 60 60 0 0 CC 40.559725 135 0 3734 0 KEEP + Gpr56 YES B[a]P_2 chr8 97844025 97844025 C G exonic Tepp nonsynonymous SNV NM_028532:c.C89G:p.S30C exonic Tepp nonsynonymous SNV uc009mye.1:c.C89G:p.S30C exonic ENSMUSG00000090206 nonsynonymous SNV ENSMUST00000098480:c.C89G:p.S30C 8qD1 NA NA chr8 97844025 GGTxCGA C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 90 0 0 24.687063 0.529412 0.02 -0.149085 8 9 230 255 60 60 0 0 CC 15.940911 53 0 1490 0 KEEP + Tepp NO B[a]P_2 chr9 103258300 103258300 A G UTR3 Cdv3 NA NA UTR3 Cdv3 NA NA UTR3 ENSMUSG00000032803 NA NA 9qF1 "Score=0.986007;Name=No.56528,chr14:43797322" NA chr9 103258300 ATAxGAT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 109 1 1 27.431787 0.255319 0.02 -0.412152 35 12 988 333 60 60 0 0 AA 14.117172 47 0 1294 0 KEEP - Cdv3 NO B[a]P_2 chr9 105660587 105660587 C T intronic Col6a6 NA NA intronic Col6a6 NA NA intronic ENSMUSG00000043719 NA NA 9qF1 NA NA chr9 105660587 GCAxAGC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.63775 0.641347 0.994391 43 0 0 54.380087 0.730769 0.02 -0.245509 7 19 191 519 60 60 0 0 CC 3.910003 13 0 359 0 KEEP - Col6a6 NO B[a]P_2 chr9 106126276 106126276 T C exonic Tlr9 nonsynonymous SNV NM_031178:c.T434C:p.L145P exonic Tlr9 nonsynonymous SNV uc009rjh.1:c.T434C:p.L145P exonic ENSMUSG00000045322 nonsynonymous SNV ENSMUST00000062241:c.T434C:p.L145P 9qF1 NA NA chr9 106126276 CCCxGGT T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 264 2 0 58.708166 0.207547 0.02 3.77298 126 33 3539 782 60 60 0 0 TT 26.129063 87 0 2334 0 KEEP + Tlr9 NO B[a]P_2 chr9 107472946 107472946 C T exonic Hyal2 nonsynonymous SNV NM_010489:c.C466T:p.R156C exonic Hyal2 nonsynonymous SNV uc009rlt.1:c.C466T:p.R156C exonic ENSMUSG00000010047 nonsynonymous SNV ENSMUST00000010191:c.C466T:p.R156C 9qF1 NA NA chr9 107472946 TCAxGCC C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 200 0 0 82.28278 0.307018 0.02 2.391474 79 35 1932 961 60 60 0 0 CC 18.224868 61 0 1500 0 KEEP + Hyal2 NO B[a]P_2 chr9 108242393 108242393 A C exonic Gpx1 unknown UNKNOWN exonic Gpx1 unknown UNKNOWN exonic ENSMUSG00000063856 unknown UNKNOWN 9qF2 NA NA chr9 108242393 TACxGCC A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 239 3 0 213.863563 0.692982 0.02 2.587895 35 79 997 2068 60 60 0 0 AA 29.87997 100 0 2647 0 KEEP + Gpx1 NO B[a]P_2 chr9 108717393 108717393 G T intronic Nckipsd NA NA intronic Nckipsd NA NA intronic ENSMUSG00000032598 NA NA 9qF2 NA NA chr9 108717393 GGGxTGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 141 0 0 135.176464 0.705882 0.02 1.197378 20 48 559 1302 60 60 0 0 GG 17.74042 59 0 1603 0 KEEP + Nckipsd YES B[a]P_2 chr9 114043067 114043067 T G intergenic "Susd5(dist=35216),Bcl2a1c(dist=196186)" NA NA intergenic "Susd5(dist=35216),AK077029(dist=103748)" NA NA intergenic "ENSMUSG00000086596(dist=35216),ENSMUSG00000064299(dist=142734)" NA NA 9qF3 "Score=0.917672;Name=No.105542,chr9:88800276" NA chr9 114043067 TAAxTGT T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 97 0 0 60.539754 0.594595 0.02 -0.324444 15 22 418 609 60 60 0 0 TT 14.438028 48 0 1339 0 KEEP NA Susd5 NO B[a]P_2 chr9 119056054 119056054 A C intronic Dlec1 NA NA intronic Dlec1 NA NA intronic ENSMUSG00000038060 NA NA 9qF3 NA NA chr9 119056054 GCAxGGT A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 66 0 0 67.517719 0.75 0.02 -0.280543 8 24 224 639 60 60 0 0 AA 8.722425 29 0 800 0 KEEP + Dlec1 NO B[a]P_2 chr9 119927333 119927333 G T exonic Xirp1 nonsynonymous SNV NM_011724:c.C1601A:p.T534N exonic Xirp1 nonsynonymous SNV uc009sbw.2:c.C1601A:p.T534N exonic ENSMUSG00000079243 nonsynonymous SNV ENSMUST00000111635:c.C1601A:p.T534N 9qF4 NA NA chr9 119927333 ATGxTAC G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 175 0 0 34.756607 0.2 0.02 0.993763 64 16 1757 445 60 60 0 0 GG 22.852226 76 0 2080 0 KEEP - Xirp1 YES B[a]P_2 chr9 121574933 121574933 T G exonic Vipr1 nonsynonymous SNV NM_011703:c.T931G:p.F311V exonic Vipr1 nonsynonymous SNV uc009sdl.2:c.T931G:p.F311V exonic ENSMUSG00000032528 nonsynonymous SNV ENSMUST00000035115:c.T931G:p.F311V 9qF4 NA NA chr9 121574933 AACxTCA T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 117 0 0 9.694569 0.142857 0.02 -0.368289 36 6 1043 143 60 60 0 0 TT 17.426196 58 0 1608 0 KEEP + Vipr1 NO B[a]P_2 chr9 14267622 14267622 T G exonic Kdm4d nonsynonymous SNV NM_173433:c.A1383C:p.Q461H exonic Kdm4d nonsynonymous SNV uc009oen.1:c.A1383C:p.Q461H exonic ENSMUSG00000053914 nonsynonymous SNV ENSMUST00000058796:c.A1383C:p.Q461H 9qA1 NA NA chr9 14267622 AAGxTGC T G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999998 91 0 0 7.41392 0.086957 0.02 -0.403357 42 4 1153 114 60 60 0 0 TT 9.92357 33 0 897 0 KEEP - Kdm4d NO B[a]P_2 chr9 14397206 14397206 G A exonic Amotl1 synonymous SNV NM_001081395:c.C1149T:p.G383G exonic Amotl1 synonymous SNV uc009oep.1:c.C1149T:p.G383G exonic ENSMUSG00000013076 synonymous SNV ENSMUST00000013220:c.C1149T:p.G383G 9qA2 NA NA chr9 14397206 GACxCCA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.999859 52 0 0 13.367659 0.230769 0.02 -0.227803 20 6 496 166 60 60 0 0 GG 5.404802 18 0 437 0 KEEP - Amotl1 NO B[a]P_2 chr9 15834392 15834392 G T exonic Fat3 nonsynonymous SNV NM_001080814:c.C4046A:p.P1349Q exonic Fat3 nonsynonymous SNV uc009ogj.1:c.C4046A:p.P1349Q exonic ENSMUSG00000074505 nonsynonymous SNV ENSMUST00000082170:c.C4046A:p.P1349Q 9qA2 NA NA chr9 15834392 GGCxGGG G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999997 90 0 0 30.981688 0.276596 0.02 -0.411393 34 13 819 368 60 60 0 0 GG 8.968312 30 0 735 0 KEEP - Fat3 YES B[a]P_2 chr9 19588279 19588279 A C exonic Olfr58 nonsynonymous SNV NM_011001:c.A701C:p.K234T exonic Olfr58 nonsynonymous SNV uc009ohu.1:c.A701C:p.K234T exonic ENSMUSG00000058659 nonsynonymous SNV ENSMUST00000079660:c.A701C:p.K234T 9qA3 "Score=0.932177;Name=No.105330,chr9:19603573" NA chr9 19588279 GGAxATA A C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 360 0 26 287.648752 0.662338 0.02 3.932276 52 102 1462 2818 60 60 0 0 AA 49.627536 165 0 4586 0 KEEP + Olfr58 NO B[a]P_2 chr9 20606408 20606408 C A exonic Col5a3 nonsynonymous SNV NM_016919:c.G1315T:p.G439C exonic Col5a3 nonsynonymous SNV uc009ojf.1:c.G1315T:p.G439C exonic ENSMUSG00000004098 nonsynonymous SNV ENSMUST00000004201:c.G1315T:p.G439C 9qA3 NA NA chr9 20606408 TGCxCGG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899217 0.899314 0.999892 71 0 0 75.081708 0.642857 0.02 -0.368289 15 27 428 741 60 60 0 0 CC 6.897811 23 0 620 0 KEEP - Col5a3 YES B[a]P_2 chr9 21007638 21007638 C G intronic Pde4a NA NA intronic Pde4a NA NA intronic ENSMUSG00000032177 NA NA 9qA3 NA NA chr9 21007638 CTGxCAG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 138 0 0 33.798478 0.291667 0.02 -0.420884 34 14 957 397 60 60 0 0 CC 20.753837 69 0 1912 0 KEEP + Pde4a NO B[a]P_2 chr9 21224483 21224483 C A exonic Qtrt1 nonsynonymous SNV NM_021888:c.C1063A:p.Q355K exonic Qtrt1 nonsynonymous SNV uc009oli.2:c.C1063A:p.Q355K exonic ENSMUSG00000002825 nonsynonymous SNV ENSMUST00000002902:c.C1063A:p.Q355K 9qA3 NA NA chr9 21224483 CTGxAGC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.454419 0.457757 0.992708 33 0 0 11.666938 0.227273 0.02 -0.192884 17 5 460 144 60 60 0 0 CC 3.007665 10 0 275 0 KEEP + Qtrt1 YES B[a]P_2 chr9 21330768 21330768 C G intronic AB124611 NA NA intronic "AB124611,Hide1" NA NA intronic ENSMUSG00000057191 NA NA 9qA3 NA NA chr9 21330768 TTGxCCT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 79 0 0 13.27112 0.181818 0.02 -0.289346 27 6 760 172 60 60 0 0 CC 9.619487 32 0 877 0 KEEP + AB124611 NO B[a]P_2 chr9 21748048 21748048 C T exonic BC018242 synonymous SNV NM_144935:c.C645T:p.Y215Y exonic "BC018242,Lppr2" synonymous SNV uc009onb.1:c.C645T:p.Y215Y exonic ENSMUSG00000040563 synonymous SNV ENSMUST00000046371:c.C645T:p.Y215Y 9qA3 NA NA chr9 21748048 CTAxGCT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.691234 0.693668 0.99649 49 0 0 63.064343 0.733333 0.02 -0.262776 8 22 177 601 60 60 0 0 CC 4.503962 15 0 352 0 KEEP + BC018242 NO B[a]P_2 chr9 32561930 32561930 G A exonic Ets1 nonsynonymous SNV NM_001038642:c.G982A:p.V328M exonic Ets1 nonsynonymous SNV uc009osc.1:c.G982A:p.V328M exonic ENSMUSG00000032035 nonsynonymous SNV ENSMUST00000050797:c.G982A:p.V328M 9qA4 NA NA chr9 32561930 TTTxTGT G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 112 2 0 70.916214 0.742857 0.02 -0.30678 9 26 248 672 60 60 0 0 GG 16.829848 56 0 1550 0 KEEP + Ets1 NO B[a]P_2 chr9 38026854 38026854 T A exonic Olfr894 nonsynonymous SNV NM_146868:c.T445A:p.F149I exonic Olfr894 nonsynonymous SNV uc009owb.2:c.T445A:p.F149I exonic ENSMUSG00000070311 nonsynonymous SNV ENSMUST00000093866:c.T445A:p.F149I 9qA5.1 NA NA chr9 38026854 ATAxTTG T A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 213 0 0 9.663727 0.063158 0.02 0.755579 89 6 2440 165 60 60 0 0 TT 28.537059 95 0 2571 0 KEEP + Olfr894 NO B[a]P_2 chr9 40569118 40569118 G A exonic Clmp nonsynonymous SNV NM_133733:c.G160A:p.D54N exonic 9030425E11Rik nonsynonymous SNV uc009ozt.1:c.G160A:p.D54N exonic ENSMUSG00000032024 nonsynonymous SNV ENSMUST00000034522:c.G160A:p.D54N 9qA5.1 NA NA chr9 40569118 ACCxATA G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999998 94 0 0 19.127128 0.195652 0.02 -0.403097 37 9 992 247 60 60 0 0 GG 10.213601 34 0 865 0 KEEP + Clmp NO B[a]P_2 chr9 44057974 44057974 A G exonic Pdzd3 nonsynonymous SNV NM_133226:c.T472C:p.C158R exonic Pdzd3 nonsynonymous SNV uc009pch.1:c.T472C:p.C158R exonic ENSMUSG00000032105 nonsynonymous SNV ENSMUST00000034618:c.T472C:p.C158R 9qA5.2 NA NA chr9 44057974 GGCxCAA A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.664773 0.668523 0.994391 42 0 0 44.205573 0.62069 0.02 -0.254146 11 18 303 440 60 60 0 0 AA 3.607133 12 0 310 0 KEEP - Pdzd3 NO B[a]P_2 chr9 44261204 44261204 A G intronic Upk2 NA NA intronic Upk2 NA NA intronic ENSMUSG00000041523 NA NA 9qA5.2 NA NA chr9 44261204 AGAxGAT A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73962 0.739671 0.999931 64 0 0 16.041432 0.21875 0.02 -0.280636 25 7 719 200 60 60 0 0 AA 7.475811 25 0 658 0 KEEP - Upk2 NO B[a]P_2 chr9 45718429 45718429 G A intronic Pcsk7 NA NA intronic Pcsk7 NA NA intronic ENSMUSG00000035382 NA NA 9qA5.2 NA NA chr9 45718429 GCTxTAT G A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 51 2 0 38.350919 0.535714 0.02 -0.245518 13 15 379 396 60 60 0 0 GG 5.715701 19 0 544 0 KEEP + Pcsk7 NO B[a]P_2 chr9 49278317 49278317 C A intronic Ttc12 NA NA intronic Ttc12 NA NA intronic ENSMUSG00000040219 NA NA 9qA5.3 NA NA chr9 49278317 GGAxGCC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 158 1 0 102.629179 0.642857 0.02 1.302644 20 36 509 1013 60 60 0 0 CC 22.539174 75 0 1902 0 KEEP - Ttc12 YES B[a]P_2 chr9 53203933 53203933 G T intronic Kdelc2 NA NA intronic Kdelc2 NA NA intronic ENSMUSG00000034487 NA NA 9qA5.3 NA NA chr9 53203933 TTTxGCT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.421102 0.423478 0.994391 37 0 0 8.6701 0.190476 0.02 -0.18413 17 4 478 112 60 60 0 0 GG 3.910864 13 0 374 0 KEEP + Kdelc2 YES B[a]P_2 chr9 54294837 54294837 G T exonic Dmxl2 synonymous SNV NM_172771:c.C1653A:p.P551P exonic Dmxl2 synonymous SNV uc009pra.2:c.C1653A:p.P551P exonic ENSMUSG00000041268 synonymous SNV ENSMUST00000127880:c.C1131A:p.P377P 9qA5.3 NA NA chr9 54294837 AGAxGGA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 65 0 0 65.652232 0.741935 0.02 -0.271646 8 23 224 624 60 60 0 0 GG 9.926533 33 0 928 0 KEEP - Dmxl2 YES B[a]P_2 chr9 54891619 54891619 G T exonic Chrnb4 nonsynonymous SNV NM_148944:c.C166A:p.R56S exonic Chrnb4 nonsynonymous SNV uc009psa.1:c.C166A:p.R56S exonic ENSMUSG00000035200 nonsynonymous SNV ENSMUST00000034854:c.C166A:p.R56S 9qB NA NA chr9 54891619 GGCxGAT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 70 0 0 65.465811 0.6875 0.02 -0.280577 10 22 252 636 60 60 0 0 GG 9.016436 30 0 770 0 KEEP - Chrnb4 YES B[a]P_2 chr9 57093732 57093732 C A intronic Trcg1 NA NA intronic Trcg1 NA NA intronic ENSMUSG00000070298 NA NA 9qB NA NA chr9 57093732 CTGxCAC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888874 0.888875 0.999999 85 0 0 57.656699 0.536585 0.02 -0.358333 19 22 486 594 60 60 0 0 CC 10.522148 35 0 957 0 KEEP + Trcg1 YES B[a]P_2 chr9 57105596 57105596 G T exonic 1700017B05Rik nonsynonymous SNV NM_028820:c.C1301A:p.A434D exonic 1700017B05Rik nonsynonymous SNV uc009puq.2:c.C1301A:p.A434D exonic ENSMUSG00000032300 nonsynonymous SNV ENSMUST00000034846:c.C1301A:p.A434D 9qB NA NA chr9 57105596 TGAxCTT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954479 0.954491 0.999988 84 0 0 51.349732 0.408163 0.02 -0.429636 29 20 807 562 60 60 0 0 GG 8.09694 27 0 716 0 KEEP - 1700017B05Rik YES B[a]P_2 chr9 57600502 57600502 T C exonic Clk3 nonsynonymous SNV NM_007713:c.A1519G:p.S507G exonic Clk3 nonsynonymous SNV uc009pvr.1:c.A1519G:p.S507G exonic ENSMUSG00000032316 nonsynonymous SNV ENSMUST00000065330:c.A1519G:p.S507G 9qB NA NA chr9 57600502 TACxCCA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 61 0 0 11.857382 0.217391 0.02 -0.201691 18 5 509 147 60 60 0 0 TT 8.722927 29 0 809 0 KEEP - Clk3 NO B[a]P_2 chr9 58993717 58993717 C T intergenic "Neo1(dist=109469),Adpgk(dist=145662)" NA NA intergenic "Neo1(dist=109469),Adpgk(dist=145662)" NA NA exonic ENSMUSG00000066592 nonsynonymous SNV ENSMUST00000085631:c.G301A:p.D101N 9qB NA NA chr9 58993717 TATxCGA C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 459 2 0 383.433275 0.627907 0.02 5.262499 80 135 2285 3807 70 60 0 0 CC 57.147084 190 0 5386 0 KEEP NA Neo1 NO B[a]P_2 chr9 64707105 64707105 G C splicing Dennd4a(NM_001162917:exon11:c.1111-1G>C) NA NA splicing "Dennd4a(uc009qcj.2:exon11:c.1111-1G>C,uc009qcg.2:exon10:c.1111-1G>C)" NA NA splicing "ENSMUSG00000053641(ENSMUST00000171136:exon10:c.1111-1G>C,ENSMUST00000038890:exon10:c.1111-1G>C,ENSMUST00000098640:exon11:c.1110-1G>C)" NA NA 9qC NA NA chr9 64707105 GCAxTTA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 280 2 0 216.284232 0.644628 0.02 2.624716 43 78 1216 2133 60 60 0 0 GG 36.699862 122 0 3475 0 KEEP + Dennd4a NO B[a]P_2 chr9 65202582 65202582 G T intronic Pdcd7 NA NA intronic Pdcd7 NA NA intronic ENSMUSG00000041837 NA NA 9qC NA NA chr9 65202582 ACCxGTT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 42 0 0 10.230601 0.263158 0.02 -0.16657 14 5 397 126 60 60 0 0 GG 5.411463 18 0 473 0 KEEP + Pdcd7 YES B[a]P_2 chr9 66795414 66795414 G C exonic Rps27l nonsynonymous SNV NM_026467:c.G136C:p.V46L exonic Rps27l nonsynonymous SNV uc009qfm.1:c.G136C:p.V46L exonic ENSMUSG00000036781 nonsynonymous SNV ENSMUST00000040917:c.G136C:p.V46L 9qC NA NA chr9 66795414 ACAxTTT G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 141 2 0 69.424594 0.581395 0.02 -0.377073 18 25 506 702 60 60 0 0 GG 18.9441 63 0 1777 0 KEEP + Rps27l NO B[a]P_2 chr9 95669572 95669572 C A exonic Pls1 nonsynonymous SNV NM_001033210:c.G1200T:p.R400S exonic Pls1 nonsynonymous SNV uc009rbk.2:c.G1200T:p.R400S exonic ENSMUSG00000049493 nonsynonymous SNV ENSMUST00000093800:c.G1200T:p.R400S 9qE3.3 NA NA chr9 95669572 TGTxCTC C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 153 1 0 98.004055 0.558824 0.02 1.100235 30 38 814 1001 60 60 0 0 CC 18.348914 61 0 1724 0 KEEP - Pls1 YES B[a]P_2 chrUn_random 1475761 1475761 T C intergenic "AU018829(dist=79450),A430089I19Rik(dist=109890)" NA NA intergenic "Gm16367(dist=79450),A430089I19Rik(dist=109890)" NA NA intergenic "ENSMUSG00000079060(dist=80746),ENSMUSG00000078969(dist=109890)" NA NA NA "Score=0.980616;Name=No.92514,chr5:94070951" NA chrUn_random 1475761 TTTxTGA T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 156 0 3 58.044288 0.407407 0.02 1.319983 32 22 897 634 60 60 0 0 TT 28.873609 96 0 2656 0 KEEP NA AU018829 NO B[a]P_2 chrX 104034315 104034315 G T exonic Zcchc5 nonsynonymous SNV NM_199468:c.C679A:p.P227T exonic Zcchc5 nonsynonymous SNV uc009ubw.1:c.C679A:p.P227T exonic ENSMUSG00000047686 nonsynonymous SNV ENSMUST00000062010:c.C679A:p.P227T XqD NA NA chrX 104034315 GTGxACT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 132 0 0 127.909637 0.895833 0.02 -0.419852 5 43 120 1141 60 60 0 0 GG 20.124185 67 0 1856 0 KEEP - Zcchc5 YES B[a]P_2 chrX 13045244 13045244 T C intronic Nyx NA NA intronic Nyx NA NA intronic ENSMUSG00000051228 NA NA XqA1.1 NA NA chrX 13045244 GACxTGC T C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 74 0 0 109.822992 1 0.02 -0.28939 0 33 0 941 0 60 0 0 TT 9.024138 30 0 844 0 KEEP + Nyx NO B[a]P_2 chrX 137075505 137075505 G C exonic Tsc22d3 nonsynonymous SNV NM_010286:c.C316G:p.L106V exonic Tsc22d3 nonsynonymous SNV uc009ukz.1:c.C145G:p.L49V exonic ENSMUSG00000031431 nonsynonymous SNV ENSMUST00000055738:c.C316G:p.L106V XqF1 "Score=0.942346;Name=No.4721,chr1:66109734" NA chrX 137075505 CCAxTTG G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 102 0 0 71.72454 0.884615 0.02 -0.236773 3 23 88 648 60 60 0 0 GG 17.4456 58 0 1624 0 KEEP - Tsc22d3 NO B[a]P_2 chrX 137488328 137488328 C A intronic Psmd10 NA NA intronic Psmd10 NA NA intronic ENSMUSG00000031429 NA NA XqF1 NA NA chrX 137488328 TGCxTAG C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 74 0 0 43.355462 0.875 0.02 -0.14031 2 14 57 393 60 60 0 0 CC 13.536436 45 0 1272 0 KEEP - Psmd10 YES B[a]P_2 chrX 140243369 140243369 C A intronic Capn6 NA NA intronic Capn6 NA NA intronic ENSMUSG00000067276 NA NA XqF2 NA NA chrX 140243369 ATGxAGT C A Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 67 0 0 82.639309 1 0.02 -0.227662 0 26 0 703 0 60 0 0 CC 9.626665 32 0 921 0 KEEP - Capn6 YES B[a]P_2 chrX 149344294 149344294 C T intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA ncRNA_intronic ENSMUSG00000083440 NA NA XqF3 NA NA chrX 149344294 CTGxTGT C T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 221 1 78 39.408788 0.363636 0.02 -0.385775 28 16 782 443 67 43 0 0 CC 42.399266 141 0 3913 0 KEEP NA Gpr143 NO B[a]P_2 chrX 20273178 20273178 A G exonic Cdk16 nonsynonymous SNV NM_011049:c.A827G:p.Y276C exonic Cdk16 nonsynonymous SNV uc009stn.1:c.A722G:p.Y241C exonic ENSMUSG00000031065 nonsynonymous SNV ENSMUST00000033380:c.A827G:p.Y276C XqA1.3 NA NA chrX 20273178 CCTxCTG A G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 108 2 0 41.324675 0.5 0.02 -0.271836 15 15 404 432 60 60 0 0 AA 18.624234 62 0 1638 0 KEEP + Cdk16 NO B[a]P_2 chrX 25467129 25467129 C G exonic Gm5168 nonsynonymous SNV NM_001025607:c.G236C:p.R79P exonic Gm5168 nonsynonymous SNV uc009svi.1:c.G236C:p.R79P exonic ENSMUSG00000079655 nonsynonymous SNV ENSMUST00000168002:c.G236C:p.R79P XqA2 "Score=0.976964;Name=No.109828,chrX:28571339" NA chrX 25467129 AAAxGTG C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 226 4 0 134.747406 0.933333 0.02 -0.394617 3 42 76 1195 45 60 0 0 CC 44.112057 147 0 3543 0 KEEP - Gm5168 NO B[a]P_2 chrX 31131659 31131659 G T intergenic "Gm2837(dist=70700),Gm2863(dist=217388)" NA NA intergenic "Gm2825(dist=151917),Gm2863(dist=217388)" NA NA intergenic "ENSMUSG00000078330(dist=151907),ENSMUSG00000079650(dist=132502)" NA NA XqA3.1 "Score=0.9869;Name=No.106977,chrX:3899311" NA chrX 31131659 GCTxTAA G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 643 1 55 145.88012 0.374194 0.02 3.727049 97 58 2687 1627 60 60 0 0 GG 123.002507 409 0 11433 0 KEEP NA Gm2837 YES B[a]P_2 chrX 8326248 8326248 G C intronic Ssx9 NA NA intronic "Ssx9,Ssxb1,Ssxb9" NA NA intronic ENSMUSG00000035371 NA NA XqA1.1 "Score=0.912157;Name=No.107398,chrX:7889956" NA chrX 8326248 GATxAAA G C Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 300 0 10 221.443535 1 0.02 1.412343 0 66 0 1900 0 60 0 0 GG 56.853482 189 0 5392 0 KEEP + Ssx9 NO B[a]P_2 chrX 83496538 83496538 G T exonic Mageb4 nonsynonymous SNV NM_001033492:c.C1223A:p.A408D exonic Mageb4 nonsynonymous SNV uc009tse.1:c.C1223A:p.A408D exonic ENSMUSG00000035427 nonsynonymous SNV ENSMUST00000096378:c.C1223A:p.A408D XqC1 "Score=0.974302;Name=No.113607,chrX:83542621" NA chrX 83496538 TCAxCCT G T Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 362 0 24 104.684229 0.43617 0.02 0.862737 53 41 1475 1131 60 60 0 0 GG 66.749106 222 0 6157 0 KEEP - Mageb4 YES B[a]P_2 chrX 98647182 98647182 C G exonic Itgb1bp2 nonsynonymous SNV NM_013712:c.C470G:p.A157G exonic Itgb1bp2 nonsynonymous SNV uc009txu.1:c.C470G:p.A157G exonic ENSMUSG00000031312 nonsynonymous SNV ENSMUST00000033674:c.C470G:p.A157G XqD NA NA chrX 98647182 ATGxTGT C G Ot9361_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index23_GAGTGG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196288 0.196312 0.999879 45 0 0 37.326878 0.857143 0.02 -0.122776 2 12 58 341 60 60 0 0 CC 6.618413 22 0 634 0 KEEP + Itgb1bp2 NO B[a]P_3 chr10 102677500 102677500 G T exonic Lrriq1 nonsynonymous SNV NM_001163559:c.C2024A:p.S675Y exonic Lrriq1 nonsynonymous SNV uc007gyi.1:c.C2024A:p.S675Y exonic ENSMUSG00000019892 nonsynonymous SNV ENSMUST00000020043:c.C2024A:p.S675Y 10qD1 NA NA chr10 102677500 ACAxAGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 199 0 0 130.272096 0.634146 0.02 0.684558 30 52 841 1289 60 60 0 0 GG 30.377108 101 0 2893 0 KEEP - Lrriq1 YES B[a]P_3 chr10 114828136 114828136 G C intronic Zfc3h1 NA NA intronic Zfc3h1 NA NA intronic ENSMUSG00000034163 NA NA 10qD2 NA NA chr10 114828136 GACxCTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 51 0 0 53.425395 0.678571 0.02 -0.245458 9 19 230 520 60 60 0 0 GG 5.711251 19 0 496 0 KEEP + Zfc3h1 NO B[a]P_3 chr10 114889252 114889252 T C exonic Lgr5 nonsynonymous SNV NM_010195:c.A2542G:p.S848G exonic Lgr5 nonsynonymous SNV uc007hbi.1:c.A2542G:p.S848G exonic ENSMUSG00000020140 nonsynonymous SNV ENSMUST00000172806:c.A2470G:p.S824G 10qD2 NA NA chr10 114889252 GACxCGC T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 109 0 0 93.785759 0.6875 0.02 -0.420872 15 33 400 910 60 60 0 0 TT 14.668528 49 0 1319 0 KEEP - Lgr5 NO B[a]P_3 chr10 119437718 119437718 G T exonic Grip1 nonsynonymous SNV NM_001277295:c.G430T:p.D144Y exonic Grip1 nonsynonymous SNV uc007hep.1:c.G430T:p.D144Y exonic ENSMUSG00000034813 nonsynonymous SNV ENSMUST00000081260:c.G430T:p.D144Y 10qD2 NA NA chr10 119437718 TTTxATG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 76 0 0 42.961812 0.473684 0.02 -0.333152 20 18 558 458 60 60 0 0 GG 8.423755 28 0 814 0 KEEP + Grip1 YES B[a]P_3 chr10 120811529 120811529 G T exonic Gns nonsynonymous SNV NM_029364:c.G344T:p.W115L exonic Gns nonsynonymous SNV uc007hfo.1:c.G344T:p.W115L exonic ENSMUSG00000034707 nonsynonymous SNV ENSMUST00000040344:c.G344T:p.W115L 10qD2 NA NA chr10 120811529 CCTxGCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 135 0 0 35.060846 0.365854 0.02 -0.359489 26 15 716 396 60 60 0 0 GG 24.364711 81 0 2283 0 KEEP + Gns YES B[a]P_3 chr10 122702349 122702349 G C UTR5 Fam19a2 NA NA UTR5 Fam19a2 NA NA UTR5 ENSMUSG00000044071 NA NA 10qD2 NA NA chr10 122702349 TTCxGGG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 82 0 0 62.111483 0.657143 0.02 -0.314104 12 23 254 608 60 60 0 0 GG 10.5162 35 0 877 0 KEEP + Fam19a2 NO B[a]P_3 chr10 127095516 127095516 G T exonic Stat6 nonsynonymous SNV NM_009284:c.G2059T:p.G687W exonic Stat6 nonsynonymous SNV uc007hka.1:c.G2059T:p.G687W exonic ENSMUSG00000002147 nonsynonymous SNV ENSMUST00000099159:c.G73T:p.G25W 10qD3 NA NA chr10 127095516 ATGxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 169 0 0 41.754936 0.285714 0.02 0.886314 50 20 1371 504 60 60 0 0 GG 26.11901 87 0 2388 0 KEEP + Stat6 YES B[a]P_3 chr10 127180070 127180070 G T exonic Zbtb39 nonsynonymous SNV NM_198035:c.G1456T:p.D486Y exonic Zbtb39 nonsynonymous SNV uc007hkl.1:c.G1456T:p.D486Y exonic ENSMUSG00000044617 nonsynonymous SNV ENSMUST00000054287:c.G1456T:p.D486Y 10qD3 NA NA chr10 127180070 TGCxATC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 141 2 0 46.008059 0.350877 0.02 1.097954 37 20 879 525 60 60 0 0 GG 19.526438 65 0 1632 0 KEEP + Zbtb39 YES B[a]P_3 chr10 127238342 127238342 A T exonic Rdh16 nonsynonymous SNV NM_009040:c.A89T:p.K30I exonic Rdh16 nonsynonymous SNV uc007hkq.2:c.A89T:p.K30I exonic ENSMUSG00000069456 nonsynonymous SNV ENSMUST00000071646:c.A89T:p.K30I 10qD3 NA NA chr10 127238342 ACAxATA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.994422 0.994422 1 205 2 0 40.958737 0.30303 0.02 0.824783 46 20 1225 490 60 60 0 0 AA 33.687205 112 0 3111 0 KEEP + Rdh16 NO B[a]P_3 chr10 127692353 127692353 G T UTR3 Apon NA NA UTR3 Apon NA NA UTR3 ENSMUSG00000051716 NA NA 10qD3 NA NA chr10 127692353 GACxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 76 0 0 35.445418 0.5 0.02 -0.2455 14 14 384 372 60 60 0 0 GG 13.493933 45 0 1163 0 KEEP + Apon YES B[a]P_3 chr10 129647946 129647946 A T exonic Olfr827 nonsynonymous SNV NM_146300:c.T239A:p.V80E exonic Olfr827 nonsynonymous SNV uc007hrh.1:c.T239A:p.V80E exonic ENSMUSG00000045559 nonsynonymous SNV ENSMUST00000058123:c.T239A:p.V80E 10qD3 NA NA chr10 129647946 ATCxCGG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 151 0 0 140.611954 0.704225 0.02 0.966084 21 50 549 1355 60 60 0 0 AA 18.318604 61 0 1627 0 KEEP - Olfr827 NO B[a]P_3 chr10 129647947 129647947 C G exonic Olfr827 nonsynonymous SNV NM_146300:c.G238C:p.V80L exonic Olfr827 nonsynonymous SNV uc007hrh.1:c.G238C:p.V80L exonic ENSMUSG00000045559 nonsynonymous SNV ENSMUST00000058123:c.G238C:p.V80L 10qD3 NA NA chr10 129647947 TCAxGGA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 149 0 0 142.188538 0.704225 0.02 1.064311 21 50 525 1371 60 60 0 0 CC 18.33323 61 0 1551 0 KEEP - Olfr827 NO B[a]P_3 chr10 18217862 18217862 G T exonic Nhsl1 nonsynonymous SNV NM_001163592:c.G235T:p.G79C exonic Nhsl1 nonsynonymous SNV uc007emh.1:c.G379T:p.G127C exonic ENSMUSG00000039835 nonsynonymous SNV ENSMUST00000037341:c.G379T:p.G127C 10qA3 NA NA chr10 18217862 GATxGCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 404 2 0 179.553856 0.67 0.02 0.721944 33 67 915 1753 60 60 0 0 GG 67.381734 224 0 6350 0 KEEP + Nhsl1 YES B[a]P_3 chr10 19570493 19570493 G T exonic Slc35d3 synonymous SNV NM_029529:c.C336A:p.P112P exonic Slc35d3 synonymous SNV uc007enk.1:c.C336A:p.P112P exonic ENSMUSG00000050473 synonymous SNV ENSMUST00000059805:c.C336A:p.P112P 10qA3 NA NA chr10 19570493 TAGxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 91 1 0 55.181038 0.564103 0.02 -0.341895 17 22 466 563 60 60 0 0 GG 11.730615 39 0 1085 0 KEEP - Slc35d3 YES B[a]P_3 chr10 19819300 19819300 G T intronic Map3k5 NA NA intronic Map3k5 NA NA intronic ENSMUSG00000071369 NA NA 10qA3 NA NA chr10 19819300 TGCxTGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 116 2 0 28.478752 0.333333 0.02 -0.315455 24 12 572 327 60 60 0 0 GG 17.128793 57 0 1439 0 KEEP + Map3k5 YES B[a]P_3 chr10 19966351 19966351 G C intronic Map7 NA NA intronic Mtap7 NA NA intronic ENSMUSG00000019996 NA NA 10qA3 NA NA chr10 19966351 GCTxCCG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 47 0 0 14.587006 0.333333 0.02 -0.166607 12 6 331 167 60 60 0 0 GG 7.215352 24 0 673 0 KEEP + Map7 NO B[a]P_3 chr10 23828715 23828715 G T exonic Taar9 nonsynonymous SNV NM_001010831:c.C626A:p.P209H exonic Taar9 nonsynonymous SNV uc007eqr.1:c.C626A:p.P209H exonic ENSMUSG00000037424 nonsynonymous SNV ENSMUST00000041180:c.C626A:p.P209H 10qA4 NA NA chr10 23828715 GTGxGCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.99986 54 0 0 29.427734 0.461538 0.02 -0.227958 14 12 383 315 60 60 0 0 GG 5.715247 19 0 536 0 KEEP - Taar9 YES B[a]P_3 chr10 26632372 26632372 G C intronic Arhgap18 NA NA intronic Arhgap18 NA NA intronic ENSMUSG00000039031 NA NA 10qA4 NA NA chr10 26632372 CCAxCTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 167 1 0 81.232823 0.516667 0.02 1.169101 29 31 814 845 60 60 0 0 GG 22.562161 75 0 2149 0 KEEP + Arhgap18 NO B[a]P_3 chr10 33528517 33528517 T A intergenic "Gm4794(dist=26596),Sult3a1(dist=49011)" NA NA intergenic "Gm4794(dist=26596),Sult3a1(dist=49011)" NA NA exonic ENSMUSG00000071343 nonsynonymous SNV ENSMUST00000105222:c.A788T:p.Q263L 10qB1 "Score=0.988019;Name=No.10564,chr6:83824191" NA chr10 33528517 GCCxGCT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 416 11 66 115.145397 0.651515 0.02 1.018848 23 43 621 1132 47 60 0 0 TT 86.310011 287 0 7885 0 KEEP NA Gm4794 NO B[a]P_3 chr10 48964241 48964241 G C exonic Grik2 nonsynonymous SNV NM_001111268:c.C1757G:p.P586R exonic Grik2 nonsynonymous SNV uc007fag.2:c.C1757G:p.P586R exonic ENSMUSG00000056073 nonsynonymous SNV ENSMUST00000105484:c.C1643G:p.P548R 10qB3 NA NA chr10 48964241 TAGxGAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053742 0.054137 0.992708 19 0 0 15.097207 0.75 0.02 -0.070081 2 6 56 142 60 60 0 0 GG 3.007915 10 0 280 0 KEEP - Grik2 NO B[a]P_3 chr10 4995550 4995550 G T exonic Syne1 synonymous SNV NM_153399:c.G2736T:p.V912V exonic Syne1 synonymous SNV uc007egp.1:c.G1260T:p.V420V exonic ENSMUSG00000019769 synonymous SNV ENSMUST00000056571:c.G2766T:p.V922V 10qA1 NA NA chr10 4995550 CGTxGAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322793 0.322807 0.999957 52 0 0 10.867311 0.277778 0.02 -0.157829 13 5 363 131 60 60 0 0 GG 7.818695 26 0 731 0 KEEP + Syne1 YES B[a]P_3 chr10 50701414 50701414 A G exonic Sim1 nonsynonymous SNV NM_011376:c.A1453G:p.R485G exonic Sim1 nonsynonymous SNV uc007fal.1:c.A1453G:p.R485G exonic ENSMUSG00000019913 nonsynonymous SNV ENSMUST00000020071:c.A1453G:p.R485G 10qB3 NA NA chr10 50701414 GGGxGAG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 83 0 0 26.305017 0.34375 0.02 -0.28059 21 11 576 300 60 60 0 0 AA 11.487045 42 1 1172 10 KEEP + Sim1 NO B[a]P_3 chr10 51443542 51443542 C G exonic Rfx6 nonsynonymous SNV NM_177306:c.C887G:p.A296G exonic Rfx6 nonsynonymous SNV uc011xdt.1:c.C77G:p.A26G exonic ENSMUSG00000019900 nonsynonymous SNV ENSMUST00000050455:c.C887G:p.A296G 10qB3 NA NA chr10 51443542 ATGxGAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 47 0 0 17.31639 0.35 0.02 -0.175369 13 7 352 196 60 60 0 0 CC 7.216492 24 0 639 0 KEEP + Rfx6 NO B[a]P_3 chr10 52120527 52120527 C A exonic Nepn nonsynonymous SNV NM_025684:c.C552A:p.S184R exonic Nepn nonsynonymous SNV uc007fbh.1:c.C552A:p.S184R exonic ENSMUSG00000038624 nonsynonymous SNV ENSMUST00000067085:c.C552A:p.S184R 10qB3 NA NA chr10 52120527 GAGxCTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 46 0 0 33.33125 0.619048 0.02 -0.18409 8 13 221 332 60 60 0 0 CC 5.113072 17 0 468 0 KEEP + Nepn YES B[a]P_3 chr10 57716948 57716948 G T intergenic "Gm4981(dist=17540),Gcc2(dist=1326)" NA NA intergenic "Gm4981(dist=17540),Gcc2(dist=1326)" NA NA intergenic "ENSMUSG00000075045(dist=17540),ENSMUSG00000038039(dist=1297)" NA NA 10qB4 NA NA chr10 57716948 CAGxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 77 0 0 27.621182 0.461538 0.02 -0.236651 14 12 383 297 60 60 0 0 GG 10.822929 36 0 993 0 KEEP NA Gm4981 YES B[a]P_3 chr10 5812342 5812342 C A exonic Ccdc170 nonsynonymous SNV NM_001195672:c.G1006T:p.D336Y exonic Gm221 nonsynonymous SNV uc011wzs.1:c.G1006T:p.D336Y exonic ENSMUSG00000019767 nonsynonymous SNV ENSMUST00000019901:c.G940T:p.D314Y 10qA1 NA NA chr10 5812342 TGTxGAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 111 0 0 25.353248 0.235294 0.02 1.24858 39 12 938 317 60 60 0 0 CC 14.723209 49 0 1236 0 KEEP - Ccdc170 YES B[a]P_3 chr10 58469880 58469880 G C exonic Sh3rf3 nonsynonymous SNV NM_172788:c.G919C:p.V307L exonic Sh3rf3 nonsynonymous SNV uc007fdj.2:c.G919C:p.V307L exonic ENSMUSG00000037990 nonsynonymous SNV ENSMUST00000099724:c.G136C:p.V46L 10qB4 NA NA chr10 58469880 TACxTGG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 74 2 0 32.841791 0.545455 0.02 -0.201645 10 12 257 337 60 60 0 0 GG 13.228443 44 0 1158 0 KEEP + Sh3rf3 NO B[a]P_3 chr10 58686083 58686083 G T exonic Sowahc nonsynonymous SNV NM_172939:c.G1292T:p.G431V exonic Ankrd57 nonsynonymous SNV uc011xed.1:c.G1292T:p.G431V ncRNA_exonic ENSMUSG00000071286 NA NA 10qB4 NA NA chr10 58686083 AGGxATG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 114 0 0 100.934325 0.645161 0.02 0.95653 22 40 614 994 60 60 0 0 GG 11.518491 41 1 1157 7 KEEP + Sowahc YES B[a]P_3 chr10 59334308 59334308 C T intergenic "Micu1(dist=7438),Dnajb12(dist=8031)" NA NA intergenic "Cbara1(dist=7438),Dnajb12(dist=8031)" NA NA intergenic "ENSMUSG00000020111(dist=7428),ENSMUSG00000020109(dist=7996)" NA NA 10qB4 NA NA chr10 59334308 TGAxGTT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 278 2 4 35.985073 0.188119 0.02 2.045319 82 19 1884 481 60 43 0 0 CC 41.710369 139 0 3365 0 KEEP NA Micu1 NO B[a]P_3 chr10 59334313 59334313 A G intergenic "Micu1(dist=7443),Dnajb12(dist=8026)" NA NA intergenic "Cbara1(dist=7443),Dnajb12(dist=8026)" NA NA intergenic "ENSMUSG00000020111(dist=7433),ENSMUSG00000020109(dist=7991)" NA NA 10qB4 NA NA chr10 59334313 TTCxGAT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 271 2 0 35.147763 0.194175 0.02 2.221657 83 20 2247 476 60 43 0 0 AA 41.507613 138 0 3830 0 KEEP NA Micu1 NO B[a]P_3 chr10 59777434 59777434 C A exonic Cdh23 nonsynonymous SNV NM_001252635:c.G7504T:p.D2502Y exonic Cdh23 nonsynonymous SNV uc007fes.1:c.G790T:p.D264Y exonic ENSMUSG00000012819 nonsynonymous SNV ENSMUST00000073242:c.G7507T:p.D2503Y 10qB4 NA NA chr10 59777434 AGTxATT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.999859 45 0 0 39.952805 0.625 0.02 -0.210426 9 15 251 397 60 60 0 0 CC 5.414376 18 0 510 0 KEEP - Cdh23 YES B[a]P_3 chr10 59792632 59792632 C G exonic Cdh23 synonymous SNV NM_001252635:c.G5736C:p.L1912L exonic Cdh23 synonymous SNV uc011xeh.1:c.G240C:p.L80L exonic ENSMUSG00000012819 synonymous SNV ENSMUST00000073242:c.G5739C:p.L1913L 10qB4 NA NA chr10 59792632 GTCxAGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999622 0.999622 1 211 6 0 67.338126 0.341176 0.02 1.048293 56 29 1566 772 60 60 0 0 CC 29.175751 97 0 2735 0 KEEP - Cdh23 NO B[a]P_3 chr10 61571825 61571825 G T exonic 2010107G23Rik nonsynonymous SNV NM_027251:c.C140A:p.P47H exonic 2010107G23Rik nonsynonymous SNV uc007fgt.1:c.C140A:p.P47H exonic ENSMUSG00000020083 nonsynonymous SNV ENSMUST00000064050:c.C140A:p.P47H 10qB4 NA NA chr10 61571825 CGGxGTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 56 0 0 16.942471 0.285714 0.02 -0.245484 20 8 545 204 60 60 0 0 GG 7.517416 25 0 692 0 KEEP - 2010107G23Rik YES B[a]P_3 chr10 6298305 6298305 C T exonic Mthfd1l nonsynonymous SNV NM_001170785:c.G1978A:p.A660T exonic Mthfd1l nonsynonymous SNV uc007ehj.2:c.G1978A:p.A660T exonic ENSMUSG00000040675 nonsynonymous SNV ENSMUST00000043735:c.G1978A:p.A660T 10qA1 NA NA chr10 6298305 TGGxGTC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 151 0 0 42.887818 0.431818 0.02 -0.385544 25 19 646 469 60 60 0 0 CC 21.30216 71 0 1856 0 KEEP - Mthfd1l NO B[a]P_3 chr10 6315808 6315808 C A exonic Mthfd1l nonsynonymous SNV NM_001170785:c.G1434T:p.E478D exonic Mthfd1l nonsynonymous SNV uc007ehj.2:c.G1434T:p.E478D exonic ENSMUSG00000040675 nonsynonymous SNV ENSMUST00000043735:c.G1434T:p.E478D 10qA1 NA NA chr10 6315808 CTCxTCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 176 0 0 56.702535 0.378788 0.02 0.921334 41 25 1149 638 60 60 0 0 CC 22.919448 80 1 2276 10 KEEP - Mthfd1l YES B[a]P_3 chr10 69271270 69271270 G T intronic Ank3 NA NA intronic Ank3 NA NA intronic ENSMUSG00000069601 NA NA 10qB5.3 NA NA chr10 69271270 TCCxTTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 76 0 0 56.567347 0.65625 0.02 -0.280494 11 21 280 555 60 60 0 0 GG 11.06361 37 0 960 0 KEEP + Ank3 YES B[a]P_3 chr10 74593817 74593817 G C exonic Bcr nonsynonymous SNV NM_001081412:c.G1510C:p.G504R exonic Bcr nonsynonymous SNV uc007fqb.2:c.G1510C:p.G504R exonic ENSMUSG00000009681 nonsynonymous SNV ENSMUST00000164107:c.G1510C:p.G504R 10qC1 NA NA chr10 74593817 TCCxGAA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999999 70 2 0 28.233662 0.545455 0.02 -0.192738 10 12 245 291 60 60 0 0 GG 10.520093 35 0 913 0 KEEP + Bcr NO B[a]P_3 chr10 75109472 75109472 T C intronic Cabin1 NA NA intronic Cabin1 NA NA intronic ENSMUSG00000020196 NA NA 10qC1 NA NA chr10 75109472 CCTxACT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 99 0 0 21.348362 0.232558 0.02 -0.385686 33 10 842 267 60 60 0 1 TT 12.302672 41 0 1079 0 KEEP - Cabin1 NO B[a]P_3 chr10 75533434 75533434 G C intronic Slc5a4b NA NA intronic Slc5a4b NA NA intronic ENSMUSG00000020226 NA NA 10qC1 NA NA chr10 75533434 GTGxATG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.959859 0.959859 1 116 0 0 93.312834 0.66 0.02 -0.438444 17 33 473 915 60 60 0 0 GG 16.544431 55 0 1560 0 KEEP - Slc5a4b NO B[a]P_3 chr10 77072601 77072601 G T exonic Sumo3 synonymous SNV NM_019929:c.G66T:p.A22A exonic Sumo3 synonymous SNV uc007fvy.1:c.G66T:p.A22A exonic ENSMUSG00000020265 synonymous SNV ENSMUST00000020501:c.G66T:p.A22A 10qC1 NA NA chr10 77072601 GGCxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457737 0.457757 0.999957 56 0 0 23.185649 0.529412 0.02 -0.192849 8 9 221 240 60 60 0 0 GG 7.812593 26 0 657 0 KEEP + Sumo3 YES B[a]P_3 chr10 77363730 77363730 C T exonic Lrrc3 nonsynonymous SNV NM_145152:c.G616A:p.A206T exonic Lrrc3 nonsynonymous SNV uc007fwi.2:c.G616A:p.A206T exonic ENSMUSG00000051652 nonsynonymous SNV ENSMUST00000057608:c.G616A:p.A206T 10qC1 NA NA chr10 77363730 TGGxGAC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 87 0 0 20.509049 0.25 0.02 -0.350468 30 10 728 255 60 60 0 0 CC 12.917017 43 0 1045 0 KEEP - Lrrc3 NO B[a]P_3 chr10 77393262 77393262 G T intronic Trpm2 NA NA intronic Trpm2 NA NA intronic ENSMUSG00000009292 NA NA 10qC1 NA NA chr10 77393262 CAGxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 44 0 0 21.78181 0.473684 0.02 -0.175343 10 9 273 232 60 60 0 0 GG 5.412376 18 0 492 0 KEEP - Trpm2 YES B[a]P_3 chr10 77396325 77396325 G T exonic Trpm2 nonsynonymous SNV NM_138301:c.C2309A:p.S770Y exonic Trpm2 nonsynonymous SNV uc007fwm.1:c.C851A:p.S284Y exonic ENSMUSG00000009292 nonsynonymous SNV ENSMUST00000105400:c.C2309A:p.S770Y 10qC1 NA NA chr10 77396325 AAGxAGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161341 0.162467 0.993072 27 0 0 16.533414 0.538462 0.02 -0.113925 6 7 169 171 60 60 0 0 GG 3.308723 11 0 308 0 KEEP - Trpm2 YES B[a]P_3 chr10 79193628 79193628 C G exonic Hcn2 nonsynonymous SNV NM_008226:c.C1393G:p.L465V exonic Hcn2 nonsynonymous SNV uc007fzn.1:c.C1393G:p.L465V exonic ENSMUSG00000020331 nonsynonymous SNV ENSMUST00000020581:c.C1393G:p.L465V 10qC1 NA NA chr10 79193628 AAAxTGC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 247 2 0 68.017106 0.308511 0.02 0.87118 65 29 1777 794 60 60 0 0 CC 34.579254 115 0 3205 0 KEEP + Hcn2 NO B[a]P_3 chr10 79589012 79589012 G C exonic Stk11 nonsynonymous SNV NM_011492:c.G632C:p.R211P exonic Stk11 nonsynonymous SNV uc007gbu.1:c.G632C:p.R211P exonic ENSMUSG00000003068 nonsynonymous SNV ENSMUST00000105370:c.G254C:p.R85P 10qC1 NA NA chr10 79589012 GCCxGAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 148 0 0 90.335277 0.609375 0.02 1.036798 25 39 665 904 60 60 0 0 GG 19.194564 64 0 1674 0 KEEP + Stk11 NO B[a]P_3 chr10 79884067 79884067 G C intronic Tcf3 NA NA intronic Tcf3 NA NA intronic ENSMUSG00000020167 NA NA 10qC1 NA NA chr10 79884067 CCAxGCG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 163 1 0 94.850888 0.654545 0.02 1.115192 19 36 533 931 60 60 0 0 GG 25.538525 85 0 2386 0 KEEP - Tcf3 NO B[a]P_3 chr10 79999450 79999450 C G intronic Atp8b3 NA NA intronic Atp8b3 NA NA intronic ENSMUSG00000003341 NA NA 10qC1 NA NA chr10 79999450 TGTxACC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 231 1 0 62.844205 0.333333 0.02 1.011317 52 26 1423 720 60 60 0 0 CC 35.173483 117 0 3243 0 KEEP - Atp8b3 NO B[a]P_3 chr10 80097263 80097263 G A exonic Csnk1g2 nonsynonymous SNV NM_001159591:c.G64A:p.G22S exonic Csnk1g2 nonsynonymous SNV uc007gea.2:c.G64A:p.G22S exonic ENSMUSG00000003345 nonsynonymous SNV ENSMUST00000019676:c.G64A:p.G22S 10qC1 NA NA chr10 80097263 ACCxGCA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 98 0 0 96.382465 0.772727 0.02 -0.38563 10 34 226 904 60 60 0 0 GG 13.513451 45 0 1060 0 KEEP + Csnk1g2 NO B[a]P_3 chr10 80297984 80297984 G T exonic Lingo3 nonsynonymous SNV NM_001013758:c.C856A:p.R286S exonic Lingo3 nonsynonymous SNV uc007gey.2:c.C856A:p.R286S exonic ENSMUSG00000051067 nonsynonymous SNV ENSMUST00000053986:c.C856A:p.R286S 10qC1 NA NA chr10 80297984 CGCxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 158 0 0 56.336594 0.338028 0.02 0.966547 47 24 1101 646 60 60 0 0 GG 20.425961 68 0 1654 0 KEEP - Lingo3 YES B[a]P_3 chr10 80357632 80357632 C G exonic Tmprss9 nonsynonymous SNV NM_001081688:c.C2246G:p.A749G exonic Tmprss9 nonsynonymous SNV uc011xja.1:c.C2246G:p.A749G exonic ENSMUSG00000059406 nonsynonymous SNV ENSMUST00000049491:c.C2144G:p.A715G 10qC1 NA NA chr10 80357632 GTGxCCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 136 1 0 52.805757 0.354839 0.02 1.054583 40 22 1062 598 60 60 0 0 CC 19.231565 64 0 1741 0 KEEP + Tmprss9 NO B[a]P_3 chr10 80361957 80361957 C G exonic Tmprss9 nonsynonymous SNV NM_001081688:c.C3172G:p.P1058A exonic Tmprss9 nonsynonymous SNV uc011xja.1:c.C3172G:p.P1058A exonic ENSMUSG00000059406 nonsynonymous SNV ENSMUST00000049491:c.C3070G:p.P1024A 10qC1 NA NA chr10 80361957 GAGxCAT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 142 1 0 53.266729 0.338235 0.02 1.099303 45 23 1217 612 60 60 0 0 CC 16.84399 56 0 1559 0 KEEP + Tmprss9 NO B[a]P_3 chr10 81050460 81050460 G T exonic Tle2 nonsynonymous SNV NM_001252401:c.G1630T:p.V544F exonic Tle2 nonsynonymous SNV uc007gip.1:c.G484T:p.V162F exonic ENSMUSG00000034771 nonsynonymous SNV ENSMUST00000135211:c.G1630T:p.V544F 10qC1 NA NA chr10 81050460 GCCxTCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 186 0 0 80.137681 0.333333 0.02 2.300843 68 34 1652 921 60 60 0 0 GG 23.692214 79 0 1896 0 KEEP + Tle2 YES B[a]P_3 chr10 83039522 83039522 G T exonic A230046K03Rik nonsynonymous SNV NM_001033375:c.G2282T:p.R761L exonic A230046K03Rik nonsynonymous SNV uc007gkj.1:c.G2282T:p.R761L exonic ENSMUSG00000034560 nonsynonymous SNV ENSMUST00000038388:c.G2282T:p.R761L 10qC1 NA NA chr10 83039522 AGCxTTA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 31 0 0 28.132729 0.714286 0.02 -0.122721 4 10 97 270 60 60 0 0 GG 4.507385 15 0 373 0 KEEP + A230046K03Rik YES B[a]P_3 chr10 86207159 86207159 G T intronic BC030307 NA NA intronic "BC030307,Gnn" NA NA intronic ENSMUSG00000044937 NA NA 10qC1 NA NA chr10 86207159 CACxTGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 111 0 0 14.653269 0.189189 0.02 -0.324153 30 7 717 191 60 60 0 0 GG 15.325749 51 0 1283 0 KEEP + BC030307 YES B[a]P_3 chr10 86306280 86306280 G T exonic Stab2 nonsynonymous SNV NM_138673:c.C7589A:p.P2530Q exonic Stab2 nonsynonymous SNV uc007gqo.1:c.C7589A:p.P2530Q exonic ENSMUSG00000035459 nonsynonymous SNV ENSMUST00000035288:c.C7589A:p.P2530Q 10qC1 NA NA chr10 86306280 GCCxGCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 118 0 0 40.896961 0.395349 0.02 -0.385087 26 17 641 453 60 60 0 0 GG 17.42795 58 0 1465 0 KEEP - Stab2 YES B[a]P_3 chr10 86360652 86360652 G A intronic Stab2 NA NA intronic Stab2 NA NA intronic ENSMUSG00000035459 NA NA 10qC1 NA NA chr10 86360652 CATxCCG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 69 0 0 41.675586 0.653846 0.02 -0.2276 9 17 253 409 60 60 0 0 GG 9.927268 33 0 946 0 KEEP - Stab2 NO B[a]P_3 chr10 88011466 88011466 G C intronic Mybpc1 NA NA intronic Mybpc1 NA NA intronic ENSMUSG00000020061 NA NA 10qC1 NA NA chr10 88011466 GTGxCGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 50 0 0 8.931959 0.266667 0.02 -0.131497 11 4 297 108 60 60 0 0 GG 8.421549 28 0 778 0 KEEP - Mybpc1 NO B[a]P_3 chr10 88034301 88034301 G T exonic Mybpc1 nonsynonymous SNV NM_001252372:c.C288A:p.H96Q exonic Mybpc1 nonsynonymous SNV uc007gru.2:c.C288A:p.H96Q exonic ENSMUSG00000020061 nonsynonymous SNV ENSMUST00000119185:c.C288A:p.H96Q 10qC1 NA NA chr10 88034301 CAGxTGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 80 0 0 63.618829 0.648649 0.02 -0.324376 13 24 352 626 60 60 0 0 GG 9.623668 32 0 874 0 KEEP - Mybpc1 YES B[a]P_3 chr10 88067659 88067659 G T exonic Mybpc1 synonymous SNV NM_001252372:c.C12A:p.P4P exonic Mybpc1 synonymous SNV uc007grt.2:c.C12A:p.P4P exonic ENSMUSG00000020061 synonymous SNV ENSMUST00000119185:c.C12A:p.P4P 10qC1 NA NA chr10 88067659 AGTxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 63 0 0 43.412482 0.615385 0.02 -0.227863 10 16 266 433 60 60 0 0 GG 8.716618 29 0 815 0 KEEP - Mybpc1 YES B[a]P_3 chr10 89018160 89018160 C A intergenic "Nr1h4(dist=21793),Slc17a8(dist=18605)" NA NA intergenic "Nr1h4(dist=21793),Slc17a8(dist=18605)" NA NA intergenic "ENSMUSG00000047638(dist=21830),ENSMUSG00000019935(dist=18605)" NA NA 10qC2 "Score=0.975512;Name=No.10005,chr4:45004623" NA chr10 89018160 CCCxGTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 156 0 0 54.897196 0.342857 0.02 0.984301 46 24 1123 630 60 60 0 0 CC 20.121108 67 0 1700 0 KEEP NA Nr1h4 YES B[a]P_3 chr10 89280826 89280826 G T UTR3 Uhrf1bp1l NA NA UTR3 Uhrf1bp1l NA NA UTR3 ENSMUSG00000019951 NA NA 10qC2 NA NA chr10 89280826 AGAxCGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 76 1 0 45.06479 0.586207 0.02 -0.254227 12 17 319 455 60 60 0 0 GG 9.926919 33 0 939 0 KEEP + Uhrf1bp1l YES B[a]P_3 chr10 90522378 90522378 A G exonic Apaf1 synonymous SNV NM_001042558:c.T1302C:p.C434C exonic Apaf1 synonymous SNV uc007gtg.1:c.T1302C:p.C434C exonic ENSMUSG00000019979 synonymous SNV ENSMUST00000020157:c.T1302C:p.C434C 10qC2 NA NA chr10 90522378 ATAxCAA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 71 0 0 21.209637 0.346154 0.02 -0.22794 17 9 453 242 60 60 0 0 AA 12.331867 41 0 1135 0 KEEP - Apaf1 NO B[a]P_3 chr11 100307050 100307050 T G exonic Klhl10 nonsynonymous SNV NM_025727:c.T548G:p.V183G exonic Klhl10 nonsynonymous SNV uc007llh.1:c.T548G:p.V183G exonic ENSMUSG00000001558 nonsynonymous SNV ENSMUST00000001599:c.T548G:p.V183G 11qD NA NA chr11 100307050 CTGxCAC T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 93 0 0 7.425169 0.113636 0.02 -0.385203 39 5 1028 117 60 60 0 0 TT 11.127948 37 0 1011 0 KEEP + Klhl10 NO B[a]P_3 chr11 100666208 100666208 C A exonic Stat5b synonymous SNV NM_001113563:c.G261T:p.L87L exonic Stat5b synonymous SNV uc007lmi.2:c.G261T:p.L87L exonic ENSMUSG00000020919 synonymous SNV ENSMUST00000004143:c.G261T:p.L87L 11qD NA NA chr11 100666208 CCCxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 119 0 0 71.829209 0.528302 0.02 1.132651 25 28 693 744 60 60 0 0 CC 14.13783 47 0 1327 0 KEEP - Stat5b YES B[a]P_3 chr11 100666209 100666209 A G exonic Stat5b nonsynonymous SNV NM_001113563:c.T260C:p.L87P exonic Stat5b nonsynonymous SNV uc007lmi.2:c.T260C:p.L87P exonic ENSMUSG00000020919 nonsynonymous SNV ENSMUST00000004143:c.T260C:p.L87P 11qD NA NA chr11 100666209 CCCxGCT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 116 0 0 75.334996 0.528302 0.02 1.230495 25 28 678 779 60 60 0 0 AA 13.534732 45 0 1243 0 KEEP - Stat5b NO B[a]P_3 chr11 101129549 101129549 G T exonic Wnk4 nonsynonymous SNV NM_175638:c.G1477T:p.G493C exonic Wnk4 nonsynonymous SNV uc007loe.2:c.G1477T:p.G493C exonic ENSMUSG00000035112 nonsynonymous SNV ENSMUST00000170056:c.G166T:p.G56C 11qD NA NA chr11 101129549 TTGxGCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 428 0 1 74.467014 0.227848 0.02 3.114742 122 36 3332 941 60 60 0 1 GG 54.043259 180 0 4985 0 KEEP + Wnk4 YES B[a]P_3 chr11 101181792 101181792 G T intronic Psme3 NA NA intronic Psme3 NA NA intronic ENSMUSG00000078652 NA NA 11qD NA NA chr11 101181792 TTGxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 65 0 0 7.271012 0.153846 0.02 -0.227421 22 4 588 102 60 60 0 0 GG 9.323975 31 0 859 0 KEEP + Psme3 YES B[a]P_3 chr11 101197191 101197191 G C exonic Aoc3 synonymous SNV NM_009675:c.G1761C:p.L587L exonic Aoc3 synonymous SNV uc007lop.2:c.G1761C:p.L587L exonic ENSMUSG00000019326 synonymous SNV ENSMUST00000017316:c.G921C:p.L307L 11qD NA NA chr11 101197191 CCTxTAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 91 2 0 39.880576 0.454545 0.02 -0.289371 18 15 499 426 60 60 0 0 GG 12.632288 42 0 1160 0 KEEP + Aoc3 NO B[a]P_3 chr11 101292786 101292786 G A exonic Rundc1 nonsynonymous SNV NM_172566:c.G791A:p.R264Q exonic Rundc1 nonsynonymous SNV uc007lov.2:c.G791A:p.R264Q exonic ENSMUSG00000035007 nonsynonymous SNV ENSMUST00000040561:c.G791A:p.R264Q 11qD NA NA chr11 101292786 TGCxGGT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 38 0 0 18.124707 0.5 0.02 -0.122728 7 7 183 190 60 60 0 0 GG 4.80936 16 0 416 0 KEEP + Rundc1 NO B[a]P_3 chr11 102342620 102342620 C A exonic Gpatch8 nonsynonymous SNV NM_001159492:c.G1405T:p.A469S exonic Gpatch8 nonsynonymous SNV uc007lsb.2:c.G763T:p.A255S exonic ENSMUSG00000034621 nonsynonymous SNV ENSMUST00000143842:c.G1405T:p.A469S 11qE1 NA NA chr11 102342620 CAGxGGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 186 0 0 67.347143 0.435484 0.02 1.036493 35 27 859 729 60 60 0 0 CC 31.811919 106 0 2523 0 KEEP - Gpatch8 YES B[a]P_3 chr11 102634771 102634771 C A exonic Adam11 synonymous SNV NM_001110778:c.C1068A:p.S356S exonic Adam11 synonymous SNV uc007lsi.2:c.C1068A:p.S356S exonic ENSMUSG00000020926 synonymous SNV ENSMUST00000068150:c.C1068A:p.S356S 11qE1 NA NA chr11 102634771 GTCxCGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 175 0 0 107.360944 0.473684 0.02 0.668506 50 45 1357 1144 60 60 0 0 CC 16.543021 55 0 1541 0 KEEP + Adam11 YES B[a]P_3 chr11 103195278 103195278 C G intronic Arhgap27 NA NA intronic Arhgap27 NA NA intronic ENSMUSG00000034255 NA NA 11qE1 NA NA chr11 103195278 CTGxCCT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 154 0 0 35.867037 0.242424 0.02 1.116745 50 16 1332 441 60 60 0 0 CC 18.62787 62 0 1656 0 KEEP - Arhgap27 NO B[a]P_3 chr11 103843044 103843044 G T exonic Arf2 nonsynonymous SNV NM_007477:c.G296T:p.R99L exonic Arf2 nonsynonymous SNV uc007lvx.1:c.G296T:p.R99L exonic ENSMUSG00000062421 nonsynonymous SNV ENSMUST00000154089:c.G176T:p.R59L 11qE1 NA NA chr11 103843044 AGCxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 50 0 0 23.187616 0.529412 0.02 -0.149005 8 9 203 240 60 60 0 0 GG 8.399949 28 0 675 0 KEEP + Arf2 YES B[a]P_3 chr11 104484784 104484784 C A exonic Itgb3 nonsynonymous SNV NM_016780:c.C136A:p.P46T exonic Itgb3 nonsynonymous SNV uc011ygd.1:c.C136A:p.P46T exonic ENSMUSG00000020689 nonsynonymous SNV ENSMUST00000021028:c.C136A:p.P46T 11qE1 NA NA chr11 104484784 AGTxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.04346 0.043787 0.99254 19 0 0 6.922586 0.5 0.02 -0.061365 3 3 84 73 60 60 0 0 CC 2.703895 9 0 244 0 KEEP + Itgb3 YES B[a]P_3 chr11 104623856 104623856 C A intergenic "Itgb3(dist=92071),Efcab3(dist=329677)" NA NA intergenic "Itgb3(dist=92071),Efcab3(dist=304293)" NA NA intronic ENSMUSG00000040838 NA NA 11qE1 NA NA chr11 104623856 TCCxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 80 1 0 18.291656 0.296296 0.02 -0.236756 19 8 530 216 60 60 0 0 CC 11.130546 37 0 1058 0 KEEP NA Itgb3 YES B[a]P_3 chr11 104978620 104978620 G T exonic Efcab3 nonsynonymous SNV NM_001081046:c.G1211T:p.G404V exonic Efcab3 nonsynonymous SNV uc007lwz.1:c.G1211T:p.G404V exonic ENSMUSG00000020690 nonsynonymous SNV ENSMUST00000021029:c.G1211T:p.G404V 11qE1 NA NA chr11 104978620 CTGxGTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780965 0.78106 0.999879 62 0 0 41.868032 0.5 0.02 -0.298079 17 17 460 440 60 60 0 0 GG 6.613582 22 0 596 0 KEEP + Efcab3 YES B[a]P_3 chr11 105101779 105101779 G T intronic Tlk2 NA NA intronic Tlk2 NA NA intronic ENSMUSG00000020694 NA NA 11qE1 NA NA chr11 105101779 TGGxGAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999998 77 0 0 29.573685 0.382353 0.02 -0.298055 21 13 578 332 60 60 0 0 GG 9.926332 33 0 924 0 KEEP + Tlk2 YES B[a]P_3 chr11 105142516 105142516 G C exonic Tlk2 nonsynonymous SNV NM_011903:c.G2101C:p.A701P exonic Tlk2 nonsynonymous SNV uc007lxg.2:c.G1885C:p.A629P exonic ENSMUSG00000020694 nonsynonymous SNV ENSMUST00000015107:c.G2101C:p.A701P 11qE1 NA NA chr11 105142516 CCTxCAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 77 0 0 31.705787 0.48 0.02 -0.219227 13 12 363 335 60 60 0 0 GG 12.030643 40 0 1131 0 KEEP + Tlk2 NO B[a]P_3 chr11 106929537 106929537 T A intronic Bptf NA NA intronic Bptf NA NA intronic ENSMUSG00000040481 NA NA 11qE1 NA NA chr11 106929537 AACxAAG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 139 0 0 80.418323 0.477612 0.02 1.009915 35 32 948 853 60 60 0 0 TT 17.445766 58 0 1617 0 KEEP - Bptf NO B[a]P_3 chr11 110933107 110933107 G T exonic Kcnj2 nonsynonymous SNV NM_008425:c.G10T:p.V4L exonic Kcnj2 nonsynonymous SNV uc007mdw.2:c.G10T:p.V4L exonic ENSMUSG00000041695 nonsynonymous SNV ENSMUST00000042970:c.G10T:p.V4L 11qE2 NA NA chr11 110933107 AGTxTGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 51 0 0 16.415423 0.35 0.02 -0.175369 13 7 362 187 60 60 0 0 GG 6.917383 23 0 642 0 KEEP + Kcnj2 YES B[a]P_3 chr11 113686422 113686422 G T exonic Sdk2 synonymous SNV NM_172800:c.C4624A:p.R1542R exonic Sdk2 synonymous SNV uc007mfe.1:c.C4624A:p.R1542R exonic ENSMUSG00000041592 synonymous SNV ENSMUST00000041627:c.C4624A:p.R1542R 11qE2 NA NA chr11 113686422 TCCxGAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 102 1 0 13.35343 0.162791 0.02 -0.376746 36 7 892 183 60 60 0 0 GG 13.20998 44 0 1123 0 KEEP - Sdk2 YES B[a]P_3 chr11 113689744 113689744 T A exonic Sdk2 nonsynonymous SNV NM_172800:c.A4334T:p.E1445V exonic Sdk2 nonsynonymous SNV uc007mfe.1:c.A4334T:p.E1445V exonic ENSMUSG00000041592 nonsynonymous SNV ENSMUST00000041627:c.A4334T:p.E1445V 11qE2 NA NA chr11 113689744 AGCxCGC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 143 0 0 31.688627 0.225352 0.02 0.868787 55 16 1480 405 60 60 0 0 TT 16.538739 55 0 1500 0 KEEP - Sdk2 NO B[a]P_3 chr11 113703971 113703971 C A intronic Sdk2 NA NA intronic Sdk2 NA NA intronic ENSMUSG00000041592 NA NA 11qE2 NA NA chr11 113703971 CATxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 111 0 0 42.530842 0.45 0.02 -0.35054 22 18 553 459 60 60 0 0 CC 16.226176 54 0 1426 0 KEEP - Sdk2 YES B[a]P_3 chr11 115252210 115252210 G T exonic Cdr2l nonsynonymous SNV NM_001080929:c.G226T:p.V76L exonic Cdr2l nonsynonymous SNV uc007mhi.1:c.G226T:p.V76L exonic ENSMUSG00000050910 nonsynonymous SNV ENSMUST00000053288:c.G226T:p.V76L 11qE2 NA NA chr11 115252210 CTCxTGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 99 0 0 51.615329 0.5 0.02 -0.350306 20 20 469 541 60 60 0 0 GG 13.814854 46 0 1155 0 KEEP + Cdr2l YES B[a]P_3 chr11 115255144 115255144 G T exonic Cdr2l nonsynonymous SNV NM_001080929:c.G991T:p.A331S exonic Cdr2l nonsynonymous SNV uc007mhi.1:c.G991T:p.A331S exonic ENSMUSG00000050910 nonsynonymous SNV ENSMUST00000053288:c.G991T:p.A331S 11qE2 NA NA chr11 115255144 CCAxCCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52183 0.522161 0.999366 45 0 0 25.775863 0.458333 0.02 -0.209853 13 11 339 277 60 60 0 0 GG 5.111614 17 0 469 0 KEEP + Cdr2l YES B[a]P_3 chr11 115271981 115271981 G T exonic Ict1 nonsynonymous SNV NM_026729:c.G479T:p.R160L exonic Ict1 nonsynonymous SNV uc007mhk.1:c.G506T:p.R169L exonic ENSMUSG00000018858 nonsynonymous SNV ENSMUST00000106539:c.G506T:p.R169L 11qE2 NA NA chr11 115271981 TACxACA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 91 0 0 42.504638 0.592593 0.02 -0.236677 11 16 283 428 60 60 0 0 GG 13.217208 44 0 1127 0 KEEP + Ict1 YES B[a]P_3 chr11 115733157 115733157 C G intergenic "Llgl2(dist=16063),Recql5(dist=20752)" NA NA intergenic "Llgl2(dist=16063),Myo15b(dist=8394)" NA NA exonic ENSMUSG00000034427 nonsynonymous SNV ENSMUST00000093911:c.C1669G:p.R557G 11qE2 NA NA chr11 115733157 CTGxGTC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 259 0 0 88.575103 0.327586 0.02 2.276134 78 38 1930 1023 60 60 0 0 CC 34.472759 115 0 2841 0 KEEP NA Llgl2 NO B[a]P_3 chr11 116040128 116040128 C G exonic Acox1 nonsynonymous SNV NM_001271898:c.G975C:p.Q325H exonic Acox1 nonsynonymous SNV uc007mkj.1:c.G39C:p.Q13H exonic ENSMUSG00000020777 nonsynonymous SNV ENSMUST00000148601:c.G867C:p.Q289H 11qE2 NA NA chr11 116040128 CGTxTGA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 49 0 0 35.849023 0.684211 0.02 -0.175366 6 13 171 348 60 60 0 0 CC 8.122446 27 0 776 0 KEEP - Acox1 NO B[a]P_3 chr11 116161605 116161605 G T exonic Exoc7 synonymous SNV NM_001162872:c.C783A:p.P261P exonic Exoc7 synonymous SNV uc007mkt.2:c.C783A:p.P261P exonic ENSMUSG00000020792 synonymous SNV ENSMUST00000021147:c.C783A:p.P261P 11qE2 NA NA chr11 116161605 GGTxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.519729 0.522161 0.995343 46 0 0 20.49581 0.375 0.02 -0.210412 15 9 414 231 60 60 0 0 GG 4.211791 14 0 405 0 KEEP - Exoc7 YES B[a]P_3 chr11 116532991 116532991 G T ncRNA_exonic 1810032O08Rik NA NA ncRNA_exonic 1810032O08Rik NA NA UTR5 ENSMUSG00000020812 NA NA 11qE2 NA NA chr11 116532991 CGAxGTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 231 2 0 73.651561 0.362637 0.02 0.702124 58 33 1646 838 60 60 0 0 GG 29.287272 107 1 2978 27 KEEP + 1810032O08Rik YES B[a]P_3 chr11 120398258 120398258 T C exonic Gcgr nonsynonymous SNV NM_008101:c.T710C:p.I237T exonic Gcgr nonsynonymous SNV uc011yjd.1:c.T47C:p.I16T exonic ENSMUSG00000025127 nonsynonymous SNV ENSMUST00000165206:c.T710C:p.I237T 11qE2 NA NA chr11 120398258 TCAxAGC T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992923 0.992926 0.999997 107 0 0 83.385751 0.5 0.02 1.134309 32 32 802 874 60 60 0 0 TT 8.420448 28 0 753 0 KEEP + Gcgr NO B[a]P_3 chr11 16787174 16787174 A C exonic Egfr nonsynonymous SNV NM_007912:c.A1911C:p.E637D exonic Egfr nonsynonymous SNV uc007ibn.1:c.A1911C:p.E637D exonic ENSMUSG00000020122 nonsynonymous SNV ENSMUST00000020329:c.A1911C:p.E637D 11qA2 NA NA chr11 16787174 TGAxGTG A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 120 2 0 27.066733 0.276596 0.02 -0.412039 34 13 925 329 60 60 0 0 AA 16.243688 54 0 1523 0 KEEP + Egfr NO B[a]P_3 chr11 16791261 16791261 G T exonic Egfr nonsynonymous SNV NM_207655:c.G2148T:p.K716N exonic Egfr nonsynonymous SNV uc007ibo.1:c.G2148T:p.K716N exonic ENSMUSG00000020122 nonsynonymous SNV ENSMUST00000020329:c.G2148T:p.K716N 11qA2 NA NA chr11 16791261 AAAxATC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 92 0 0 37.314224 0.470588 0.02 -0.298074 18 16 504 399 60 60 0 0 GG 14.440024 48 0 1379 0 KEEP + Egfr YES B[a]P_3 chr11 17874436 17874436 C A intergenic "Etaa1(dist=20558),Meis1(dist=905995)" NA NA intergenic "AK013680(dist=14855),BC050140(dist=872175)" NA NA ncRNA_exonic ENSMUSG00000084413 NA NA 11qA3.1 "Score=0.952572;Name=No.14820,chr3:142625505,No.15792,chr7:59001997,No.15552,chr6:83824194,No.15097,chr4:91518180" NA chr11 17874436 GGGxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 308 4 5 47.816776 0.4 0.02 1.150679 30 20 713 529 60 60 0 0 CC 66.30809 221 0 5444 0 KEEP NA Etaa1 YES B[a]P_3 chr11 21968343 21968343 A C intronic Ehbp1 NA NA intronic Ehbp1 NA NA intronic ENSMUSG00000042302 NA NA 11qA3.2 NA NA chr11 21968343 GCTxCAA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 163 0 0 37.229069 0.266667 0.02 1.071399 44 16 1104 447 60 60 0 0 AA 24.641779 82 0 2155 0 KEEP - Ehbp1 NO B[a]P_3 chr11 26494833 26494833 T A upstream Vrk2 NA NA upstream Vrk2 NA NA upstream;downstream ENSMUSG00000064090;ENSMUSG00000068314 NA NA 11qA3.3 NA NA chr11 26494833 TACxCTG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 76 0 0 37.528367 0.517241 0.02 -0.262988 14 15 372 391 60 60 0 0 TT 10.82851 36 0 1008 0 KEEP - Vrk2 NO B[a]P_3 chr11 33990577 33990577 G T exonic Lcp2 nonsynonymous SNV NM_010696:c.G1492T:p.V498L exonic Lcp2 nonsynonymous SNV uc007ikv.1:c.G1492T:p.V498L exonic ENSMUSG00000002699 nonsynonymous SNV ENSMUST00000052413:c.G1495T:p.V499L 11qA4 NA NA chr11 33990577 TCTxTAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 78 1 0 36.90549 0.405405 0.02 -0.324425 22 15 603 406 60 60 0 0 GG 8.422954 28 0 798 0 KEEP + Lcp2 YES B[a]P_3 chr11 3763483 3763483 G T exonic Osbp2 nonsynonymous SNV NM_152818:c.C388A:p.L130M exonic Osbp2 nonsynonymous SNV uc007htq.1:c.C388A:p.L130M exonic ENSMUSG00000020435 nonsynonymous SNV ENSMUST00000070552:c.C388A:p.L130M 11qA1 NA NA chr11 3763483 GCAxCGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 160 0 0 86.926926 0.539683 0.02 0.9301 29 34 804 896 60 60 0 0 GG 21.957121 73 0 2039 0 KEEP - Osbp2 YES B[a]P_3 chr11 43399151 43399151 G T exonic Ccnjl synonymous SNV NM_001045530:c.G1098T:p.T366T exonic Ccnjl synonymous SNV uc007ims.1:c.G1098T:p.T366T exonic ENSMUSG00000044707 synonymous SNV ENSMUST00000050574:c.G1098T:p.T366T 11qB1.1 NA NA chr11 43399151 TACxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9266 0.92664 0.999957 83 0 0 31.367663 0.311111 0.02 -0.394346 31 14 770 368 60 60 0 0 GG 7.801132 26 0 646 0 KEEP + Ccnjl YES B[a]P_3 chr11 48614079 48614079 G T intronic Gnb2l1 NA NA intronic Gnb2l1 NA NA intronic ENSMUSG00000020372 NA NA 11qB1.2 NA NA chr11 48614079 TACxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 147 0 0 94.436478 0.73913 0.02 -0.411994 12 34 320 897 60 60 0 0 GG 23.760366 79 0 2176 0 KEEP + Gnb2l1 YES B[a]P_3 chr11 48883838 48883838 G C intronic Olfr56 NA NA intronic Olfr56 NA NA ncRNA_exonic ENSMUSG00000083178 NA NA 11qB1.2 "Score=0.929308;Name=No.12938,chr11:48724729" NA chr11 48883838 TAGxCTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 180 2 2 128.604764 0.571429 0.02 0.950479 36 48 967 1306 60 60 0 0 GG 21.656 72 0 2003 0 KEEP + Olfr56 NO B[a]P_3 chr11 49687317 49687317 T A intronic Mapk9 NA NA intronic "Jnk2,Mapk9" NA NA intronic ENSMUSG00000020366 NA NA 11qB1.2 NA NA chr11 49687317 TTTxAAT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 114 0 0 13.102019 0.155556 0.02 -0.403225 38 7 977 182 60 60 0 0 TT 13.233895 44 0 1212 0 KEEP + Mapk9 NO B[a]P_3 chr11 50861820 50861820 C A intergenic "Olfr54(dist=20373),Zfp354a(dist=10939)" NA NA intergenic "Olfr54(dist=20373),Zfp354a(dist=10939)" NA NA exonic ENSMUSG00000057890 nonsynonymous SNV ENSMUST00000073543:c.C210A:p.F70L 11qB1.3 "Score=0.90204;Name=No.12960,chr11:50827969" NA chr11 50861820 CTTxGTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 344 2 1 121.862084 0.390977 0.02 2.029249 81 52 2020 1357 60 60 0 0 CC 49.863171 166 0 4161 0 KEEP NA Olfr54 YES B[a]P_3 chr11 51457511 51457511 T C exonic N4bp3 nonsynonymous SNV NM_145974:c.A1226G:p.D409G exonic N4bp3 nonsynonymous SNV uc007iue.1:c.A1226G:p.D409G exonic ENSMUSG00000001053 nonsynonymous SNV ENSMUST00000001080:c.A1226G:p.D409G 11qB1.3 NA NA chr11 51457511 GCGxCCT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 145 0 0 70.111521 0.353659 0.02 1.057482 53 29 1332 794 60 60 0 0 TT 14.709743 49 0 1318 0 KEEP - N4bp3 NO B[a]P_3 chr11 5181750 5181750 C G exonic Znrf3 nonsynonymous SNV NM_001080924:c.G1765C:p.D589H exonic Znrf3 nonsynonymous SNV uc007hwj.2:c.G1765C:p.D589H exonic ENSMUSG00000041961 nonsynonymous SNV ENSMUST00000109867:c.G1765C:p.D589H 11qA1 NA NA chr11 5181750 AGTxGCT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 67 0 0 26.529813 0.333333 0.02 -0.289213 22 11 558 304 60 60 0 0 CC 9.007541 30 0 770 0 KEEP - Znrf3 NO B[a]P_3 chr11 53280273 53280273 G C exonic Shroom1 synonymous SNV NM_027917:c.G2148C:p.L716L exonic Shroom1 synonymous SNV uc007iwd.1:c.G1959C:p.L653L exonic ENSMUSG00000018387 synonymous SNV ENSMUST00000018531:c.G1959C:p.L653L 11qB1.3 NA NA chr11 53280273 TCTxCTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 108 0 0 67.857903 0.52 0.02 -0.4371 24 26 672 706 60 60 0 0 GG 13.837735 46 0 1311 0 KEEP + Shroom1 NO B[a]P_3 chr11 54318289 54318289 G C exonic Fnip1 nonsynonymous SNV NM_173753:c.G2986C:p.G996R exonic Fnip1 nonsynonymous SNV uc007ixx.2:c.G2986C:p.G996R exonic ENSMUSG00000035992 nonsynonymous SNV ENSMUST00000046835:c.G2986C:p.G996R 11qB1.3 NA NA chr11 54318289 TTTxGAA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 96 0 0 44.731181 0.4 0.02 -0.394586 27 18 757 493 60 60 0 0 GG 12.334338 41 0 1182 0 KEEP + Fnip1 NO B[a]P_3 chr11 54982423 54982423 G C exonic Slc36a2 nonsynonymous SNV NM_153170:c.C737G:p.P246R exonic Slc36a2 nonsynonymous SNV uc007iyz.2:c.C737G:p.P246R exonic ENSMUSG00000020264 nonsynonymous SNV ENSMUST00000039305:c.C737G:p.P246R 11qB1.3 NA NA chr11 54982423 TCTxGAA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 132 0 0 31.27263 0.34 0.02 -0.438014 33 17 892 371 60 60 0 0 GG 20.752897 69 0 1919 0 KEEP - Slc36a2 NO B[a]P_3 chr11 57124117 57124117 G C exonic Gria1 nonsynonymous SNV NM_001113325:c.G2278C:p.V760L exonic Gria1 nonsynonymous SNV uc007izs.2:c.G2278C:p.V760L exonic ENSMUSG00000020524 nonsynonymous SNV ENSMUST00000036315:c.G2278C:p.V760L 11qB1.3 NA NA chr11 57124117 CCCxTAA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 151 0 0 72.721872 0.482759 0.02 1.186994 30 28 692 768 60 60 0 0 GG 22.776645 76 0 1767 0 KEEP + Gria1 NO B[a]P_3 chr11 58033793 58033793 G C exonic Irgm2 nonsynonymous SNV NM_019440:c.G807C:p.K269N exonic Irgm2 nonsynonymous SNV uc007jat.2:c.G807C:p.K269N exonic ENSMUSG00000069874 nonsynonymous SNV ENSMUST00000058704:c.G843C:p.K281N 11qB1.3 NA NA chr11 58033793 AAAxAGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999998 79 0 0 29.143057 0.352941 0.02 -0.297947 22 12 600 330 60 60 0 0 GG 10.228351 34 0 977 0 KEEP + Irgm2 NO B[a]P_3 chr11 58762719 58762719 G C exonic Hist3h2ba nonsynonymous SNV NM_030082:c.G278C:p.R93P exonic Hist3h2ba nonsynonymous SNV uc007jcr.1:c.G278C:p.R93P exonic ENSMUSG00000056895 nonsynonymous SNV ENSMUST00000078267:c.G278C:p.R93P 11qB1.3 NA NA chr11 58762719 CCCxCGA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 118 1 2 48.720488 0.4 0.02 -0.438256 30 20 802 538 60 60 0 0 GG 17.974284 60 0 1548 0 KEEP + Hist3h2ba NO B[a]P_3 chr11 59022550 59022550 C G exonic 2310033P09Rik nonsynonymous SNV NM_024210:c.C371G:p.A124G exonic 2310033P09Rik nonsynonymous SNV uc007jdl.1:c.C371G:p.A124G exonic ENSMUSG00000020441 nonsynonymous SNV ENSMUST00000020719:c.C371G:p.A124G 11qB1.3 NA NA chr11 59022550 GCGxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 103 0 0 9.543935 0.135135 0.02 -0.331117 32 5 841 135 60 60 1 0 CC 14.071818 47 0 1266 0 KEEP + 2310033P09Rik NO B[a]P_3 chr11 59557884 59557884 G C intronic Mprip NA NA intronic Mprip NA NA intronic ENSMUSG00000005417 NA NA 11qB1.3 NA NA chr11 59557884 CTGxCAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 81 0 0 17.604485 0.25 0.02 -0.280557 24 8 644 216 60 60 0 0 GG 11.427391 38 0 1041 0 KEEP + Mprip NO B[a]P_3 chr11 60217475 60217475 C G intronic Atpaf2 NA NA intronic Atpaf2 NA NA intronic ENSMUSG00000042709 NA NA 11qB2 NA NA chr11 60217475 AAGxCCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.64132 0.641347 0.999957 64 0 0 10.283485 0.178571 0.02 -0.245501 23 5 622 136 60 60 0 0 CC 7.519684 25 0 695 0 KEEP - Atpaf2 NO B[a]P_3 chr11 60497498 60497498 C G intergenic "Alkbh5(dist=125484),Llgl1(dist=15694)" NA NA intergenic "Alkbh5(dist=125484),Llgl1(dist=15694)" NA NA ncRNA_exonic ENSMUSG00000081472 NA NA 11qB2 "Score=0.966835;Name=No.12994,chr11:60474607" NA chr11 60497498 TGAxGTA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 194 2 31 36.340946 0.253968 0.02 1.143222 47 16 1119 442 60 60 0 0 CC 26.737676 89 0 2187 0 KEEP NA Alkbh5 NO B[a]P_3 chr11 60880394 60880394 G T exonic Kcnj12 nonsynonymous SNV NM_010603:c.G192T:p.W64C UTR5 Kcnj12 NA NA exonic ENSMUSG00000042529 nonsynonymous SNV ENSMUST00000041944:c.G192T:p.W64C 11qB2 NA NA chr11 60880394 CTGxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 83 0 0 59.839201 0.676471 0.02 -0.297875 11 23 300 582 60 60 0 0 GG 12.02745 40 0 1089 0 KEEP + Kcnj12 YES B[a]P_3 chr11 60884166 60884166 G T UTR3 Kcnj12 NA NA UTR3 Kcnj12 NA NA UTR3 ENSMUSG00000042529 NA NA 11qB2 NA NA chr11 60884166 CTCxGAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 161 1 0 112.985579 0.617647 0.02 1.001265 26 42 663 1126 60 60 0 0 GG 20.406494 68 0 1686 0 KEEP + Kcnj12 YES B[a]P_3 chr11 61150498 61150498 G T intronic Slc47a2 NA NA intronic Slc47a2 NA NA intronic ENSMUSG00000069855 NA NA 11qB2 NA NA chr11 61150498 GCGxCCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 42 0 0 11.538928 0.333333 0.02 -0.140284 10 5 270 133 60 60 0 0 GG 6.9137 23 0 604 0 KEEP - Slc47a2 YES B[a]P_3 chr11 6249049 6249049 T A intronic Ogdh NA NA intronic Ogdh NA NA intronic ENSMUSG00000020456 NA NA 11qA1 NA NA chr11 6249049 ACAxGGT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.99986 52 0 0 28.856735 0.4 0.02 -0.262965 18 12 450 319 60 60 0 0 TT 5.713548 19 0 507 0 KEEP + Ogdh NO B[a]P_3 chr11 6249050 6249050 G T intronic Ogdh NA NA intronic Ogdh NA NA intronic ENSMUSG00000020456 NA NA 11qA1 NA NA chr11 6249050 CATxGTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693577 0.693668 0.999869 54 0 0 26.450688 0.4 0.02 -0.262987 18 12 501 295 60 60 0 0 GG 6.317261 21 0 599 0 KEEP + Ogdh YES B[a]P_3 chr11 6296812 6296812 G C exonic Zmiz2 synonymous SNV NM_001005867:c.G417C:p.L139L exonic Zmiz2 synonymous SNV uc007hym.1:c.G417C:p.L139L exonic ENSMUSG00000041164 synonymous SNV ENSMUST00000109785:c.G513C:p.L171L 11qA1 NA NA chr11 6296812 CCTxCAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.421102 0.423478 0.994391 38 0 0 17.308874 0.368421 0.02 -0.166608 12 7 333 194 60 60 0 0 GG 3.910235 13 0 362 0 KEEP + Zmiz2 NO B[a]P_3 chr11 64994356 64994356 G A intronic Myocd NA NA intronic "BSAC2A,Myocd" NA NA intronic ENSMUSG00000020542 NA NA 11qB3 NA NA chr11 64994356 ATGxGTG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 63 1 0 36.24982 0.684211 0.02 -0.166599 6 13 168 352 60 60 0 0 GG 10.227242 34 0 954 0 KEEP - Myocd NO B[a]P_3 chr11 6499672 6499672 G C exonic Nacad nonsynonymous SNV NM_001081652:c.C3521G:p.S1174C exonic Nacad nonsynonymous SNV uc007hyy.1:c.C3521G:p.S1174C exonic ENSMUSG00000041073 nonsynonymous SNV ENSMUST00000045713:c.C3521G:p.S1174C 11qA1 NA NA chr11 6499672 TCAxAGG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 231 1 0 31.178486 0.164835 0.02 0.844824 76 15 2127 417 60 60 0 0 GG 32.788161 109 0 3102 0 KEEP - Nacad NO B[a]P_3 chr11 6500165 6500165 G T exonic Nacad nonsynonymous SNV NM_001081652:c.C3028A:p.R1010S exonic Nacad nonsynonymous SNV uc007hyy.1:c.C3028A:p.R1010S exonic ENSMUSG00000041073 nonsynonymous SNV ENSMUST00000045713:c.C3028A:p.R1010S 11qA1 NA NA chr11 6500165 CACxCTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 313 0 0 176.958917 0.515152 0.02 2.029422 64 68 1603 1842 60 60 0 0 GG 42.622193 142 0 3559 0 KEEP - Nacad YES B[a]P_3 chr11 67015393 67015393 G T exonic Myh1 nonsynonymous SNV NM_030679:c.G10T:p.D4Y exonic Myh1 nonsynonymous SNV uc007jmh.1:c.G10T:p.D4Y exonic ENSMUSG00000056328 nonsynonymous SNV ENSMUST00000075734:c.G10T:p.D4Y 11qB3 NA NA chr11 67015393 TCCxACG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 254 2 0 71.250747 0.32 0.02 0.721015 68 32 1720 832 60 60 0 0 GG 33.612702 112 0 2785 0 KEEP + Myh1 YES B[a]P_3 chr11 67093476 67093476 C T exonic Myh8 nonsynonymous SNV NM_177369:c.C295T:p.L99F exonic "Myh2,Myh8,mKIAA4211" nonsynonymous SNV uc007jmq.1:c.C19T:p.L7F exonic ENSMUSG00000055775 nonsynonymous SNV ENSMUST00000108685:c.C295T:p.L99F 11qB3 NA NA chr11 67093476 CACxTCC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 131 1 0 67.337536 0.435484 0.02 1.053736 35 27 956 729 60 60 0 0 CC 17.435165 58 0 1628 0 KEEP + Myh8 NO B[a]P_3 chr11 67174921 67174921 G T exonic Myh13 nonsynonymous SNV NM_001081250:c.G4352T:p.R1451I exonic Myh13 nonsynonymous SNV uc007jmt.1:c.G4352T:p.R1451I exonic ENSMUSG00000060180 nonsynonymous SNV ENSMUST00000081911:c.G4352T:p.R1451I 11qB3 NA NA chr11 67174921 AAAxAAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120423 0.120436 0.999892 41 0 0 14.566729 0.545455 0.02 -0.096431 5 6 138 150 60 60 0 0 GG 6.919056 23 0 660 0 KEEP + Myh13 YES B[a]P_3 chr11 67712396 67712396 G T exonic Usp43 nonsynonymous SNV NM_173754:c.C823A:p.R275S exonic Usp43 nonsynonymous SNV uc007jne.1:c.C823A:p.R275S exonic ENSMUSG00000020905 nonsynonymous SNV ENSMUST00000021288:c.C823A:p.R275S 11qB3 NA NA chr11 67712396 GGCxCAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 174 0 0 130.455081 0.569767 0.02 0.8348 37 49 904 1326 60 60 0 0 GG 17.728825 59 0 1480 0 KEEP - Usp43 YES B[a]P_3 chr11 67763016 67763016 G T intronic Wdr16 NA NA intronic Wdr16 NA NA intronic ENSMUSG00000020904 NA NA 11qB3 NA NA chr11 67763016 TCTxTGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16126 0.162467 0.99257 24 0 0 18.039852 0.538462 0.02 -0.113984 6 7 167 186 60 60 0 0 GG 2.406771 8 0 232 0 KEEP - Wdr16 YES B[a]P_3 chr11 68707855 68707855 G T UTR3 Rnf222 NA NA UTR3 Rnf222 NA NA UTR3 ENSMUSG00000046490 NA NA 11qB3 NA NA chr11 68707855 GGAxTGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 77 0 0 36.863824 0.410256 0.02 -0.350099 23 16 613 407 60 60 0 0 GG 9.014008 30 0 809 0 KEEP + Rnf222 YES B[a]P_3 chr11 68970907 68970907 C T intronic Alox12b NA NA intronic Alox12b NA NA intronic ENSMUSG00000032807 NA NA 11qB3 NA NA chr11 68970907 GCAxGCG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 71 0 0 37.326899 0.5 0.02 -0.262869 15 15 353 392 60 60 0 0 CC 8.711828 29 0 704 0 KEEP + Alox12b NO B[a]P_3 chr11 69853350 69853350 G C exonic Dlg4 nonsynonymous SNV NM_001109752:c.G1279C:p.G427R exonic Dlg4 nonsynonymous SNV uc007jtp.2:c.G1288C:p.G430R exonic ENSMUSG00000020886 nonsynonymous SNV ENSMUST00000123687:c.G28C:p.G10R 11qB3 NA NA chr11 69853350 CGGxGCT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 64 0 0 33.037181 0.576923 0.02 -0.227782 11 15 302 336 60 60 0 0 GG 9.323169 31 0 860 0 KEEP + Dlg4 NO B[a]P_3 chr11 69984074 69984074 T C exonic Clec10a stoploss SNV NM_001204252:c.T916C:p.X306Q exonic Clec10a stoploss SNV uc007jtx.1:c.T913C:p.X305Q exonic ENSMUSG00000000318 stoploss SNV ENSMUST00000000327:c.T916C:p.X306Q 11qB3 NA NA chr11 69984074 AGCxAGG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.99986 48 0 0 16.432591 0.259259 0.02 -0.236661 20 7 495 198 60 60 0 0 TT 5.711386 19 0 492 0 KEEP + Clec10a NO B[a]P_3 chr11 70471470 70471470 G C intronic Eno3 NA NA intronic Eno3 NA NA intronic ENSMUSG00000060600 NA NA 11qB3 NA NA chr11 70471470 CAGxCTT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 147 1 0 51.609849 0.293333 0.02 1.038612 53 22 1419 608 60 60 0 0 GG 17.110114 57 0 1513 0 KEEP + Eno3 NO B[a]P_3 chr11 72681534 72681534 G C exonic Zzef1 nonsynonymous SNV NM_001045536:c.G3796C:p.A1266P exonic Zzef1 nonsynonymous SNV uc007jzl.2:c.G3796C:p.A1266P exonic ENSMUSG00000055670 nonsynonymous SNV ENSMUST00000069395:c.G3796C:p.A1266P 11qB4 NA NA chr11 72681534 GAAxCAA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760795 0.760887 0.999879 61 0 0 26.426629 0.333333 0.02 -0.289341 22 11 594 303 60 60 0 0 GG 6.617319 22 0 613 0 KEEP + Zzef1 NO B[a]P_3 chr11 72784080 72784080 G T intronic Atp2a3 NA NA intronic Atp2a3 NA NA intronic ENSMUSG00000020788 NA NA 11qB4 NA NA chr11 72784080 ATGxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 160 0 0 77.261552 0.463768 0.02 0.992454 37 32 1005 827 60 60 0 0 GG 19.248303 64 0 1784 0 KEEP + Atp2a3 YES B[a]P_3 chr11 72785878 72785878 G T intronic Atp2a3 NA NA intronic Atp2a3 NA NA intronic ENSMUSG00000020788 NA NA 11qB4 NA NA chr11 72785878 GGGxACC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 95 0 0 44.428802 0.487179 0.02 -0.341608 20 19 517 471 60 60 0 0 GG 14.435892 48 0 1333 0 KEEP + Atp2a3 YES B[a]P_3 chr11 72839471 72839471 G T intronic Camkk1 NA NA intronic Camkk1 NA NA intronic ENSMUSG00000020785 NA NA 11qB4 NA NA chr11 72839471 ACGxACC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.908493 0.909069 0.999366 69 0 0 35.60209 0.372093 0.02 -0.376999 27 16 753 403 60 60 0 0 GG 5.087305 17 0 460 0 KEEP + Camkk1 YES B[a]P_3 chr11 73402390 73402390 G T exonic Olfr385 synonymous SNV NM_147023:c.C849A:p.P283P exonic Olfr385 synonymous SNV uc007kax.1:c.C849A:p.P283P exonic ENSMUSG00000059470 synonymous SNV ENSMUST00000071553:c.C849A:p.P283P 11qB4 "Score=0.912288;Name=No.13007,chr11:73352450" NA chr11 73402390 CATxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 228 0 0 95.064031 0.5 0.02 0.948483 37 37 1032 997 60 60 0 0 GG 37.745329 129 1 3659 9 KEEP - Olfr385 YES B[a]P_3 chr11 78046143 78046143 C A intronic Supt6 NA NA intronic Supt6h NA NA intronic ENSMUSG00000002052 NA NA 11qB5 NA NA chr11 78046143 CCCxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 153 2 0 53.037899 0.5 0.02 1.052902 22 22 599 558 70 60 0 2 CC 20.983791 70 0 1878 0 KEEP - Supt6 YES B[a]P_3 chr11 80627857 80627857 G T intronic Tmem98 NA NA intronic Tmem98 NA NA intronic ENSMUSG00000035413 NA NA 11qB5 NA NA chr11 80627857 TAAxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 135 2 0 52.732653 0.389831 0.02 0.982746 36 23 991 589 60 60 0 0 GG 17.446498 58 0 1632 0 KEEP + Tmem98 YES B[a]P_3 chr11 82603105 82603105 A T exonic Lig3 synonymous SNV NM_010716:c.A1104T:p.P368P exonic Lig3 synonymous SNV uc007knf.1:c.A78T:p.P26P exonic ENSMUSG00000020697 synonymous SNV ENSMUST00000021039:c.A1113T:p.P371P 11qC NA NA chr11 82603105 CCCxGCT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 107 0 0 37.879212 0.454545 0.02 -0.289331 18 15 480 406 60 60 0 0 AA 18.046303 60 0 1658 0 KEEP + Lig3 NO B[a]P_3 chr11 85372674 85372674 G C splicing "Bcas3(NM_001166643:exon19:c.2029+1G>C,NM_001166642:exon20:c.2029+1G>C,NM_138681:exon21:c.2074+1G>C)" NA NA splicing "Bcas3(uc007krp.2:exon20:c.2062+1G>C,uc007krq.2:exon21:c.2074+1G>C,uc007krr.2:exon20:c.2029+1G>C,uc007krs.2:exon19:c.2029+1G>C,uc007krt.2:exon19:c.2017+1G>C)" NA NA splicing "ENSMUSG00000059439(ENSMUST00000108057:exon20:c.2029+1G>C,ENSMUST00000108062:exon20:c.2074+1G>C,ENSMUST00000108061:exon21:c.2074+1G>C,ENSMUST00000074875:exon20:c.2074+1G>C,ENSMUST00000092821:exon18:c.2029+1G>C,ENSMUST00000154396:exon10:c.1368+1G>C,ENSMUST00000142596:exon6:c.654+1G>C,ENSMUST00000092822:exon5:c.598+1G>C)" NA NA 11qC NA NA chr11 85372674 GCTxTGA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 45 0 0 15.678431 0.4 0.02 -0.131531 9 6 243 172 60 60 0 0 GG 7.518522 25 0 677 0 KEEP + Bcas3 NO B[a]P_3 chr11 86057925 86057925 C T exonic Ints2 synonymous SNV NM_027421:c.G1164A:p.L388L exonic Ints2 synonymous SNV uc007ksi.1:c.G1164A:p.L388L exonic ENSMUSG00000018068 synonymous SNV ENSMUST00000108039:c.G1164A:p.L388L 11qC NA NA chr11 86057925 CATxAAG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999998 88 0 0 52.967086 0.5 0.02 -0.368262 21 21 588 556 60 60 0 0 CC 10.228547 34 0 982 0 KEEP - Ints2 NO B[a]P_3 chr11 87427272 87427272 A C splicing Mtmr4(NM_133215:exon18:c.3307-2A>C) NA NA splicing "Mtmr4(uc007ktz.1:exon18:c.3307-2A>C,uc007kua.1:exon17:c.3136-2A>C,uc007kub.1:exon18:c.3307-2A>C)" NA NA splicing "ENSMUSG00000018401(ENSMUST00000103179:exon18:c.3307-2A>C,ENSMUST00000167336:exon18:c.3134-2A>C,ENSMUST00000092802:exon17:c.3136-2A>C,ENSMUST00000119628:exon18:c.3307-2A>C)" NA NA 11qC NA NA chr11 87427272 GGTxGGT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 166 0 0 28.468538 0.208333 0.02 1.064174 57 15 1468 373 60 60 0 0 AA 21.319394 71 0 1867 0 KEEP + Mtmr4 NO B[a]P_3 chr11 87635698 87635698 T C intronic Lpo NA NA intronic Lpo NA NA intronic ENSMUSG00000009356 NA NA 11qC NA NA chr11 87635698 GCTxACC T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.22747 0.229173 0.99257 24 0 0 21.714577 0.533333 0.02 -0.131526 7 8 188 224 60 60 0 0 TT 2.406223 8 0 221 0 KEEP - Lpo NO B[a]P_3 chr11 89253168 89253168 G A exonic 4932411E22Rik synonymous SNV NM_172534:c.C966T:p.G322G exonic 4932411E22Rik synonymous SNV uc007kwi.1:c.C966T:p.G322G exonic ENSMUSG00000047490 synonymous SNV ENSMUST00000050983:c.C966T:p.G322G 11qC NA NA chr11 89253168 CAGxCCT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 124 0 0 54.316531 0.45098 0.02 0.991527 28 23 770 586 60 60 0 0 GG 18.643551 62 0 1674 0 KEEP - 4932411E22Rik NO B[a]P_3 chr11 89253169 89253169 C T exonic 4932411E22Rik nonsynonymous SNV NM_172534:c.G965A:p.G322D exonic 4932411E22Rik nonsynonymous SNV uc007kwi.1:c.G965A:p.G322D exonic ENSMUSG00000047490 nonsynonymous SNV ENSMUST00000050983:c.G965A:p.G322D 11qC NA NA chr11 89253169 AGGxCTC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 123 0 0 53.144792 0.46 0.02 1.000725 27 23 744 572 60 60 0 0 CC 18.338768 61 0 1654 0 KEEP - 4932411E22Rik NO B[a]P_3 chr11 91437505 91437505 G T exonic Kif2b nonsynonymous SNV NM_028547:c.C1265A:p.S422Y exonic Kif2b nonsynonymous SNV uc007kxf.1:c.C1265A:p.S422Y exonic ENSMUSG00000046755 nonsynonymous SNV ENSMUST00000061019:c.C1265A:p.S422Y 11qD NA NA chr11 91437505 GAGxAGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 100 0 0 31.067856 0.411765 0.02 -0.298047 20 14 549 344 60 60 0 0 GG 15.642512 52 0 1478 0 KEEP - Kif2b YES B[a]P_3 chr11 93439954 93439954 T G intronic Car10 NA NA intronic Car10 NA NA intronic ENSMUSG00000056158 NA NA 11qD NA NA chr11 93439954 TTCxTAT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 77 0 0 12.747285 0.214286 0.02 -0.245514 22 6 602 162 60 60 0 0 TT 11.430407 38 0 1067 0 KEEP + Car10 NO B[a]P_3 chr11 94675251 94675251 G C intronic Tmem92 NA NA ncRNA_intronic Tmem92 NA NA upstream ENSMUSG00000081478 NA NA 11qD "Score=0.971318;Name=No.13034,chr11:94654263" NA chr11 94675251 GTTxGGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 138 0 17 34.426883 0.432432 0.02 -0.324279 21 16 579 378 60 60 0 0 GG 24.362335 81 0 2261 0 KEEP - Tmem92 NO B[a]P_3 chr11 94889812 94889812 C A exonic Pdk2 nonsynonymous SNV NM_133667:c.G950T:p.G317V exonic Pdk2 nonsynonymous SNV uc007kzu.2:c.G950T:p.G317V exonic ENSMUSG00000038967 nonsynonymous SNV ENSMUST00000038431:c.G950T:p.G317V 11qD NA NA chr11 94889812 GTGxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 154 2 0 47.628806 0.328125 0.02 1.036231 43 21 1163 552 60 60 0 0 CC 20.723442 69 0 1869 0 KEEP - Pdk2 YES B[a]P_3 chr11 95335842 95335842 A G exonic Spop synonymous SNV NM_025287:c.A396G:p.G132G exonic Spop synonymous SNV uc007lak.1:c.A396G:p.G132G exonic ENSMUSG00000057522 synonymous SNV ENSMUST00000092765:c.A396G:p.G132G 11qD NA NA chr11 95335842 GGGxTTC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 71 0 0 14.761055 0.184211 0.02 -0.333143 31 7 811 193 60 60 0 0 AA 9.590088 32 0 858 0 KEEP + Spop NO B[a]P_3 chr11 96006863 96006863 C T exonic Ttll6 nonsynonymous SNV NM_172799:c.C1003T:p.L335F exonic Ttll6 nonsynonymous SNV uc011yde.1:c.C691T:p.L231F exonic ENSMUSG00000038756 nonsynonymous SNV ENSMUST00000107680:c.C691T:p.L231F 11qD NA NA chr11 96006863 ACGxTCA C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 72 0 0 53.742077 0.625 0.02 -0.289298 12 20 319 534 60 60 0 0 CC 9.626272 32 0 913 0 KEEP + Ttll6 NO B[a]P_3 chr11 96565407 96565407 A G exonic Skap1 nonsynonymous SNV NM_001033186:c.A389G:p.K130R exonic Skap1 nonsynonymous SNV uc007lcd.2:c.A389G:p.K130R exonic ENSMUSG00000057058 nonsynonymous SNV ENSMUST00000049000:c.A389G:p.K130R 11qD NA NA chr11 96565407 AGAxGCG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 30 0 0 6.705611 0.25 0.02 -0.10497 9 3 229 82 60 60 0 0 AA 3.30758 11 0 301 0 KEEP + Skap1 NO B[a]P_3 chr11 97198811 97198811 A T exonic Gpr179 synonymous SNV NM_001081220:c.T3831A:p.T1277T exonic Gpr179 synonymous SNV uc007ldy.1:c.T3831A:p.T1277T exonic ENSMUSG00000070337 synonymous SNV ENSMUST00000093942:c.T3831A:p.T1277T 11qD NA NA chr11 97198811 CTCxGTC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 409 4 0 194.247216 0.46988 0.02 3.336727 88 78 2354 2069 60 60 0 0 AA 52.61888 182 1 4968 19 KEEP - Gpr179 NO B[a]P_3 chr11 97224564 97224564 T C exonic Socs7 synonymous SNV NM_138657:c.T609C:p.S203S exonic Socs7 synonymous SNV uc007lea.1:c.T609C:p.S203S exonic ENSMUSG00000038485 synonymous SNV ENSMUST00000045540:c.T609C:p.S203S 11qD NA NA chr11 97224564 TTCxCGG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38494 0.387407 0.993634 35 0 0 20.510529 0.470588 0.02 -0.16659 9 8 243 218 60 60 0 0 TT 3.608864 12 0 333 0 KEEP + Socs7 NO B[a]P_3 chr11 97224566 97224566 G T exonic Socs7 nonsynonymous SNV NM_138657:c.G611T:p.R204L exonic Socs7 nonsynonymous SNV uc007lea.1:c.G611T:p.R204L exonic ENSMUSG00000038485 nonsynonymous SNV ENSMUST00000045540:c.G611T:p.R204L 11qD NA NA chr11 97224566 CTCxGAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 36 0 0 22.982986 0.5 0.02 -0.175119 9 9 187 241 60 60 0 0 GG 3.889751 13 0 300 0 KEEP + Socs7 YES B[a]P_3 chr11 98314860 98314860 G T exonic Grb7 nonsynonymous SNV NM_010346:c.G973T:p.D325Y exonic Grb7 nonsynonymous SNV uc011yeb.1:c.G370T:p.D124Y exonic ENSMUSG00000019312 nonsynonymous SNV ENSMUST00000019456:c.G973T:p.D325Y 11qD NA NA chr11 98314860 GAGxATG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 102 2 0 27.965895 0.371429 0.02 -0.306804 22 13 621 318 60 60 0 0 GG 14.138536 47 0 1338 0 KEEP + Grb7 YES B[a]P_3 chr11 99442075 99442075 G T exonic Krtap1-5 nonsynonymous SNV NM_027157:c.C205A:p.R69S exonic Krtap1-5 nonsynonymous SNV uc007ljc.2:c.C205A:p.R69S exonic ENSMUSG00000047253 nonsynonymous SNV ENSMUST00000054532:c.C205A:p.R69S 11qD NA NA chr11 99442075 GGCxGCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 134 0 0 72.11815 0.518519 0.02 1.115277 26 28 647 750 60 60 0 0 GG 20.423629 68 0 1745 0 KEEP - Krtap1-5 YES B[a]P_3 chr11 99873214 99873214 T A exonic Krt33a nonsynonymous SNV NM_027983:c.A1097T:p.K366M exonic Krt33a nonsynonymous SNV uc007lka.2:c.A1097T:p.K366M exonic ENSMUSG00000035592 nonsynonymous SNV ENSMUST00000018399:c.A1097T:p.K366M 11qD NA NA chr11 99873214 CACxTGC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 218 0 0 53.210417 0.290698 0.02 0.737458 61 25 1663 638 60 60 0 0 TT 30.68159 102 0 2865 0 KEEP - Krt33a NO B[a]P_3 chr12 104308421 104308421 G T intronic Unc79 NA NA exonic Unc79 nonsynonymous SNV uc007ouy.1:c.G365T:p.W122L intronic ENSMUSG00000021198 NA NA 12qE NA NA chr12 104308421 GGTxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099371 0.099721 0.99649 28 0 0 6.678528 0.3 0.02 -0.087681 7 3 192 79 60 60 0 0 GG 4.512137 15 0 424 0 KEEP + Unc79 YES B[a]P_3 chr12 104326924 104326924 C A exonic Unc79 nonsynonymous SNV NM_001081017:c.C2975A:p.A992E exonic Unc79 nonsynonymous SNV uc007oux.2:c.C2444A:p.A815E exonic ENSMUSG00000021198 nonsynonymous SNV ENSMUST00000085079:c.C2444A:p.A815E 12qE NA NA chr12 104326924 CGGxGAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 117 0 0 52.845395 0.5 0.02 -0.367859 21 21 535 555 60 60 0 0 CC 16.832737 56 0 1453 0 KEEP + Unc79 YES B[a]P_3 chr12 107274920 107274920 T C intronic Vrk1 NA NA intronic Vrk1 NA NA intronic ENSMUSG00000021115 NA NA 12qF1 NA NA chr12 107274920 GAGxGCT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120175 0.120436 0.997832 32 0 0 12.758916 0.545455 0.02 -0.096349 5 6 134 132 60 60 0 0 TT 4.780894 16 0 400 0 KEEP + Vrk1 NO B[a]P_3 chr12 109345687 109345687 C T exonic Setd3 nonsynonymous SNV NM_028262:c.G1540A:p.V514M exonic Setd3 nonsynonymous SNV uc007ozk.2:c.G982A:p.V328M exonic ENSMUSG00000056770 nonsynonymous SNV ENSMUST00000085012:c.G982A:p.V328M 12qF1 "Score=0.977419;Name=No.28693,chr2:128995775" NA chr12 109345687 CCAxACC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 77 0 0 42.434237 0.44186 0.02 -0.385278 24 19 658 462 60 60 0 0 CC 9.023726 30 0 843 0 KEEP - Setd3 NO B[a]P_3 chr12 109595717 109595717 A G exonic Cyp46a1 nonsynonymous SNV NM_010010:c.A1001G:p.E334G exonic Cyp46a1 nonsynonymous SNV uc007ozo.1:c.A1001G:p.E334G exonic ENSMUSG00000021259 nonsynonymous SNV ENSMUST00000021684:c.A1001G:p.E334G 12qF1 NA NA chr12 109595717 ATGxGGT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 109 0 0 45.637302 0.548387 0.02 -0.271806 14 17 374 468 60 60 0 0 AA 17.143727 57 0 1585 0 KEEP + Cyp46a1 NO B[a]P_3 chr12 111554203 111554203 C G intergenic "Dio3(dist=34896),Ppp2r5c(dist=131186)" NA NA intronic Ppp2r5c NA NA intergenic "ENSMUSG00000075707(dist=34896),ENSMUSG00000017843(dist=131315)" NA NA 12qF1 NA NA chr12 111554203 ATGxCGC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 214 7 49 26.191199 0.354839 0.02 -0.271806 20 11 543 297 55 60 0 0 CC 42.71676 144 1 3909 5 KEEP NA Dio3 NO B[a]P_3 chr12 112782743 112782743 G A exonic Eif5 nonsynonymous SNV NM_173363:c.G1204A:p.V402I exonic Eif5 nonsynonymous SNV uc007pdi.2:c.G778A:p.V260I exonic ENSMUSG00000021282 nonsynonymous SNV ENSMUST00000058102:c.G778A:p.V260I 12qF1 "Score=0.91039;Name=No.30731,chr7:18623841" NA chr12 112782743 GTCxTAT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 144 5 0 33.574933 0.466667 0.02 -0.341703 16 14 402 359 60 60 0 1 GG 24.387636 85 1 2067 10 KEEP + Eif5 NO B[a]P_3 chr12 113979129 113979129 G T exonic Cep170b nonsynonymous SNV NM_001024602:c.G3845T:p.R1282L exonic AW555464 nonsynonymous SNV uc011yvg.1:c.G3458T:p.R1153L exonic ENSMUSG00000072825 nonsynonymous SNV ENSMUST00000092279:c.G1097T:p.R366L 12qF1 NA NA chr12 113979129 CTCxCTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999859 32 2 0 12.901444 0.555556 0.02 -0.078856 4 5 100 132 60 60 0 0 GG 5.410811 18 0 471 0 KEEP + Cep170b YES B[a]P_3 chr12 114023348 114023348 T A intergenic "Pld4(dist=16151),BC022687(dist=23838)" NA NA exonic Ahnak2 synonymous SNV uc007pff.1:c.A1089T:p.A363A exonic ENSMUSG00000072812 synonymous SNV ENSMUST00000124526:c.A1089T:p.A363A 12qF1 NA NA chr12 114023348 AACxGCC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 347 0 0 138.144694 0.495413 0.02 2.337039 55 54 1470 1452 60 60 0 0 TT 57.43036 191 0 5274 0 KEEP NA Pld4 NO B[a]P_3 chr12 114176650 114176650 C A exonic Nudt14 synonymous SNV NM_025399:c.G345T:p.L115L exonic Nudt14 synonymous SNV uc007pfm.1:c.G345T:p.L115L exonic ENSMUSG00000002804 synonymous SNV ENSMUST00000002881:c.G345T:p.L115L 12qF1 NA NA chr12 114176650 TTCxAGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 123 0 0 67.122297 0.625 0.02 -0.350724 15 25 420 667 60 60 0 0 CC 21.342745 71 0 2014 0 KEEP - Nudt14 YES B[a]P_3 chr12 114177472 114177472 C T intronic Nudt14 NA NA intronic Nudt14 NA NA intronic ENSMUSG00000002804 NA NA 12qF1 NA NA chr12 114177472 GGCxAGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 59 2 0 24.80987 0.478261 0.02 -0.210212 12 11 334 265 60 60 0 0 CC 8.422639 28 0 791 0 KEEP - Nudt14 NO B[a]P_3 chr12 114657240 114657240 A G intergenic "Tmem121(dist=229507),Adam6b(dist=70536)" NA NA ncRNA_exonic V00821 NA NA downstream ENSMUSG00000078993 NA NA 12qF1 NA NA chr12 114657240 CACxGGT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 89 0 0 33.453455 0.4375 0.02 -0.280412 18 14 472 363 60 60 0 0 AA 12.920464 43 0 1166 0 KEEP NA Tmem121 NO B[a]P_3 chr12 114826770 114826770 G T intergenic "Adam6a(dist=42145),NONE(dist=NONE)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076634 nonsynonymous SNV ENSMUST00000103443:c.C58A:p.Q20K 12qF1 "Score=0.959251;Name=No.26247,chr12:114921620" NA chr12 114826770 CCTxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 576 6 57 56.568995 0.212121 0.02 1.932779 104 28 2868 728 60 60 0 0 GG 98.932002 332 1 9387 8 KEEP NA Adam6a YES B[a]P_3 chr12 115251659 115251659 C T intergenic "Adam6a(dist=467034),Zfp386(dist=2034276)" NA NA ncRNA_intronic abParts NA NA intergenic "ENSMUSG00000076658(dist=18550),ENSMUSG00000078992(dist=20485)" NA NA 12qF1 "Score=0.935806;Name=No.26270,chr12:115167294" NA chr12 115251659 GGAxCCC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 93 0 1 14.763425 0.269231 0.02 -0.227971 19 7 529 180 60 46 0 0 CC 15.940861 53 0 1468 0 KEEP NA Adam6a NO B[a]P_3 chr12 115700612 115700612 A G intergenic "Adam6a(dist=915987),Zfp386(dist=1585323)" NA NA ncRNA_intronic abParts NA NA intergenic "ENSMUSG00000076680(dist=27157),ENSMUSG00000078991(dist=6704)" NA NA 12qF2 NA NA chr12 115700612 CAAxGAT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 92 0 0 52.694017 0.575758 0.02 -0.289339 14 19 369 534 60 60 0 0 AA 15.930303 53 0 1444 0 KEEP NA Adam6a NO B[a]P_3 chr12 116384023 116384023 T A intergenic "Adam6a(dist=1599398),Zfp386(dist=901912)" NA NA ncRNA_intronic abParts NA NA intronic ENSMUSG00000076713 NA NA 12qF2 "Score=0.968205;Name=No.26294,chr12:116531417" NA chr12 116384023 GAGxGGA T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 881 26 75 160.014772 0.427632 0.02 3.267533 87 65 2216 1741 60 60 0 0 TT 174.020842 579 0 15208 0 KEEP NA Adam6a NO B[a]P_3 chr12 116446460 116446460 C A intergenic "Adam6a(dist=1661835),Zfp386(dist=839475)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076717 nonsynonymous SNV ENSMUST00000103526:c.G197T:p.W66L 12qF2 "Score=0.951738;Name=No.26315,chr12:116604218" NA chr12 116446460 ATCxACT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1007 47 37 38.570935 0.12 0.02 4.205957 154 21 4209 564 60 37 0 0 CC 208.343328 699 1 19683 17 KEEP NA Adam6a YES B[a]P_3 chr12 116573302 116573302 G T intergenic "Adam6a(dist=1788677),Zfp386(dist=712633)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076721 stopgain SNV ENSMUST00000103530:c.C339A:p.Y113X 12qF2 "Score=0.968205;Name=No.26294,chr12:116304914" NA chr12 116573302 ACAxTAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1223 110 288 9.910155 0.05 0.02 3.106767 133 7 3625 186 60 29 0 0 GG 235.807172 784 0 22099 0 KEEP NA Adam6a YES B[a]P_3 chr12 116734210 116734210 G T intergenic "Adam6a(dist=1949585),Zfp386(dist=551725)" NA NA ncRNA_intronic abParts NA NA intronic ENSMUSG00000076725 NA NA 12qF2 "Score=0.970896;Name=No.26341,chr12:116941178" NA chr12 116734210 AATxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 718 5 68 12.076462 0.068376 0.02 2.063552 109 8 3015 209 60 60 0 0 GG 153.042357 509 0 14333 0 KEEP NA Adam6a YES B[a]P_3 chr12 116842458 116842458 G C intergenic "NONE(dist=NONE),Zfp386(dist=443477)" NA NA ncRNA_intronic abParts NA NA upstream ENSMUSG00000076729 NA NA 12qF2 NA NA chr12 116842458 CCTxTGA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1018 5 3 24.808022 0.082353 0.02 4.658896 156 14 4309 391 70 70 0 0 GG 218.042745 725 0 20128 0 KEEP NA NONE NO B[a]P_3 chr12 117029179 117029179 G T intergenic "NONE(dist=NONE),Zfp386(dist=256756)" NA NA ncRNA_intronic abParts NA NA upstream ENSMUSG00000057610 NA NA 12qF2 "Score=0.970896;Name=No.26341,chr12:116645030" NA chr12 117029179 AATxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 339 10 35 8.259854 0.1 0.02 0.912957 54 6 1484 138 60 29 0 0 GG 68.551768 228 0 6408 0 KEEP NA NONE YES B[a]P_3 chr12 117682804 117682804 G C exonic Ncapg2 nonsynonymous SNV NM_133762:c.G2950C:p.E984Q exonic Ncapg2 nonsynonymous SNV uc007pht.1:c.G2950C:p.E984Q exonic ENSMUSG00000042029 nonsynonymous SNV ENSMUST00000084828:c.G2950C:p.E984Q 12qF2 NA NA chr12 117682804 CATxAAT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 138 0 0 48.791281 0.404255 0.02 -0.412159 28 19 787 535 60 60 0 0 GG 19.853253 66 0 1895 0 KEEP + Ncapg2 NO B[a]P_3 chr12 117699086 117699086 T C exonic Ncapg2 stoploss SNV NM_133762:c.T3415C:p.X1139R exonic Ncapg2 stoploss SNV uc007pht.1:c.T3415C:p.X1139R exonic ENSMUSG00000042029 stoploss SNV ENSMUST00000084828:c.T3415C:p.X1139R 12qF2 NA NA chr12 117699086 CCAxGAC T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999999 67 0 0 13.803548 0.368421 0.02 -0.166486 12 7 315 159 60 60 0 0 TT 10.225478 34 0 924 0 KEEP + Ncapg2 NO B[a]P_3 chr12 119365957 119365957 C G exonic Dnah11 nonsynonymous SNV NM_010060:c.G2912C:p.R971P exonic Dnahc11 nonsynonymous SNV uc007pie.1:c.G2912C:p.R971P exonic ENSMUSG00000018581 nonsynonymous SNV ENSMUST00000084806:c.G2912C:p.R971P 12qF2 NA NA chr12 119365957 ACGxGCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 148 0 0 54.696349 0.525 0.02 -0.350573 19 21 470 567 60 60 0 0 CC 25.239922 84 0 2134 0 KEEP - Dnah11 NO B[a]P_3 chr12 12946651 12946651 C T exonic Mycn synonymous SNV NM_008709:c.G549A:p.P183P exonic Mycn synonymous SNV uc007nbf.1:c.G525A:p.P175P exonic ENSMUSG00000037169 synonymous SNV ENSMUST00000130990:c.G549A:p.P183P 12qA1.1 NA NA chr12 12946651 AGCxGGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 56 0 0 19.302743 0.421053 0.02 -0.166467 11 8 257 211 60 60 0 0 CC 8.379235 28 0 683 0 KEEP - Mycn NO B[a]P_3 chr12 27154298 27154298 A C exonic Cmpk2 nonsynonymous SNV NM_020557:c.A82C:p.M28L exonic Cmpk2 nonsynonymous SNV uc007nfj.1:c.A82C:p.M28L exonic ENSMUSG00000020638 nonsynonymous SNV ENSMUST00000020969:c.A82C:p.M28L 12qA2 NA NA chr12 27154298 TGCxTGG A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 48 0 0 19.76475 0.347826 0.02 -0.201628 15 8 380 224 60 60 0 0 AA 6.014522 20 0 537 0 KEEP + Cmpk2 NO B[a]P_3 chr12 30942817 30942817 G T intronic Sntg2 NA NA intronic Sntg2 NA NA intronic ENSMUSG00000020672 NA NA 12qA2 NA NA chr12 30942817 CGAxGTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 64 0 0 18.842683 0.444444 0.02 -0.15782 10 8 284 204 60 60 0 0 GG 9.625945 32 0 907 0 KEEP - Sntg2 YES B[a]P_3 chr12 33721422 33721422 G C exonic Cdhr3 synonymous SNV NM_001024478:c.C2337G:p.A779A exonic Cdhr3 synonymous SNV uc007nij.1:c.C2337G:p.A779A exonic ENSMUSG00000035860 synonymous SNV ENSMUST00000095774:c.C2337G:p.A779A 12qA3 NA NA chr12 33721422 TACxGCT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 67 0 0 15.935979 0.333333 0.02 -0.184027 14 7 345 184 60 60 0 0 GG 11.698684 39 0 963 0 KEEP - Cdhr3 NO B[a]P_3 chr12 3501898 3501898 A G exonic Asxl2 synonymous SNV NM_172421:c.A3639G:p.R1213R exonic Asxl2 synonymous SNV uc007mwr.2:c.A3609G:p.R1203R exonic ENSMUSG00000037486 synonymous SNV ENSMUST00000153102:c.A3639G:p.R1213R 12qA1.1 NA NA chr12 3501898 GAGxGGT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 182 1 0 68.839014 0.435484 0.02 1.151619 35 27 936 744 60 60 0 0 AA 30.34123 101 0 2755 0 KEEP + Asxl2 NO B[a]P_3 chr12 39329355 39329355 G T exonic Dgkb nonsynonymous SNV NM_178681:c.G2151T:p.M717I exonic Dgkb nonsynonymous SNV uc007nkn.1:c.G1974T:p.M658I exonic ENSMUSG00000036095 nonsynonymous SNV ENSMUST00000040500:c.G2151T:p.M717I 12qA3 NA NA chr12 39329355 AATxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717285 0.717315 0.999957 61 0 0 34.906502 0.451613 0.02 -0.271821 17 14 475 375 60 60 0 0 GG 7.81889 26 0 719 0 KEEP + Dgkb YES B[a]P_3 chr12 4777027 4777027 C A exonic Pfn4 synonymous SNV NM_028376:c.C69A:p.L23L exonic Pfn4 synonymous SNV uc007myf.1:c.C69A:p.L23L exonic ENSMUSG00000020639 synonymous SNV ENSMUST00000020967:c.C69A:p.L23L 12qA1.1 NA NA chr12 4777027 CCTxATC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120425 0.120436 0.999909 40 0 0 19.004821 0.636364 0.02 -0.096452 4 7 113 188 60 60 0 0 CC 7.220058 24 0 690 0 KEEP + Pfn4 YES B[a]P_3 chr12 53022418 53022418 C A exonic Heatr5a synonymous SNV NM_177171:c.G2421T:p.L807L exonic Heatr5a synonymous SNV uc007nnb.1:c.G2421T:p.L807L exonic ENSMUSG00000035181 synonymous SNV ENSMUST00000040583:c.G2421T:p.L807L 12qC1 NA NA chr12 53022418 CTCxAGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 195 0 0 72.848585 0.460317 0.02 1.044931 34 29 953 779 60 60 0 0 CC 30.685288 102 0 2937 0 KEEP - Heatr5a YES B[a]P_3 chr12 67385033 67385033 C A exonic Rpl10l synonymous SNV NM_001162933:c.G312T:p.S104S exonic Rpl10l synonymous SNV uc011ymh.1:c.G312T:p.S104S exonic ENSMUSG00000060499 synonymous SNV ENSMUST00000081908:c.G312T:p.S104S 12qC2 "Score=0.977605;Name=No.28566,chr2:78352516" NA chr12 67385033 GCAxGAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 71 0 0 38.828334 0.576923 0.02 -0.227385 11 15 258 394 60 60 0 0 CC 11.412105 38 0 906 0 KEEP - Rpl10l YES B[a]P_3 chr12 70285874 70285874 G T exonic Mgat2 nonsynonymous SNV NM_146035:c.G234T:p.E78D exonic Mgat2 nonsynonymous SNV uc011ymy.1:c.G234T:p.E78D exonic ENSMUSG00000043998 nonsynonymous SNV ENSMUST00000060579:c.G234T:p.E78D 12qC2 NA NA chr12 70285874 GGAxGTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 213 2 1 71.514005 0.455882 0.02 0.89515 37 31 1027 771 60 60 0 0 GG 33.966345 113 0 3134 0 KEEP + Mgat2 YES B[a]P_3 chr12 71292077 71292077 G T exonic Pygl synonymous SNV NM_133198:c.C2446A:p.R816R exonic Pygl synonymous SNV uc007ntm.2:c.C2446A:p.R816R exonic ENSMUSG00000021069 synonymous SNV ENSMUST00000071250:c.C2446A:p.R816R 12qC2 NA NA chr12 71292077 TTCxGTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 100 0 0 60.17495 0.534884 0.02 -0.376885 20 23 489 621 60 60 0 0 GG 13.525399 45 0 1166 0 KEEP - Pygl YES B[a]P_3 chr12 76733963 76733963 T A exonic Wdr89 nonsynonymous SNV NM_028203:c.A503T:p.H168L exonic Wdr89 nonsynonymous SNV uc007nxj.2:c.A503T:p.H168L exonic ENSMUSG00000045690 nonsynonymous SNV ENSMUST00000062370:c.A503T:p.H168L 12qC3 NA NA chr12 76733963 CTGxGCG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 154 0 0 73.618451 0.571429 0.02 -0.438285 21 28 537 748 60 60 0 0 TT 26.762975 89 0 2394 0 KEEP - Wdr89 NO B[a]P_3 chr12 8004740 8004740 C T exonic Apob nonsynonymous SNV NM_009693:c.C2912T:p.T971I exonic Apob nonsynonymous SNV uc007mzf.2:c.C2912T:p.T971I exonic ENSMUSG00000020609 nonsynonymous SNV ENSMUST00000037520:c.C2873T:p.T958I 12qA1.1 NA NA chr12 8004740 TCAxTGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 76 1 0 28.453422 0.4 0.02 -0.263044 18 12 505 315 60 60 0 0 CC 12.934637 43 0 1215 0 KEEP + Apob NO B[a]P_3 chr12 81693398 81693398 C A exonic Galnt16 synonymous SNV NM_001081421:c.C1198A:p.R400R exonic Galntl1 synonymous SNV uc007oay.1:c.C1198A:p.R400R exonic ENSMUSG00000021130 synonymous SNV ENSMUST00000021558:c.C1198A:p.R400R 12qC3 NA NA chr12 81693398 ACGxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 192 0 0 29.710233 0.295455 0.02 -0.411869 31 13 760 351 60 60 0 0 CC 32.030025 107 0 2724 0 KEEP + Galnt16 YES B[a]P_3 chr12 81693400 81693400 G A exonic Galnt16 synonymous SNV NM_001081421:c.G1200A:p.R400R exonic Galntl1 synonymous SNV uc007oay.1:c.G1200A:p.R400R exonic ENSMUSG00000021130 synonymous SNV ENSMUST00000021558:c.G1200A:p.R400R 12qC3 NA NA chr12 81693400 GCGxATC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 191 0 0 31.526698 0.318182 0.02 -0.412091 30 14 837 368 60 60 0 0 GG 31.876769 106 0 2972 0 KEEP + Galnt16 NO B[a]P_3 chr12 81693401 81693401 A T exonic Galnt16 nonsynonymous SNV NM_001081421:c.A1201T:p.I401F exonic Galntl1 nonsynonymous SNV uc007oay.1:c.A1201T:p.I401F exonic ENSMUSG00000021130 nonsynonymous SNV ENSMUST00000021558:c.A1201T:p.I401F 12qC3 NA NA chr12 81693401 CGGxTCG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 192 0 0 31.064304 0.311111 0.02 -0.420783 31 14 807 365 60 60 0 0 AA 31.842188 106 0 2858 0 KEEP + Galnt16 NO B[a]P_3 chr12 81971239 81971239 G T intronic 4933426M11Rik NA NA intronic 4933426M11Rik NA NA intronic ENSMUSG00000021133 NA NA 12qD1 NA NA chr12 81971239 CCAxTTA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161432 0.162467 0.993634 27 0 0 11.622563 0.384615 0.02 -0.113979 8 5 220 130 60 60 0 0 GG 3.607107 12 0 321 0 KEEP + 4933426M11Rik YES B[a]P_3 chr12 85074979 85074979 G T exonic Psen1 nonsynonymous SNV NM_008943:c.G1362T:p.Q454H exonic Psen1 nonsynonymous SNV uc007odp.1:c.G1362T:p.Q454H exonic ENSMUSG00000019969 nonsynonymous SNV ENSMUST00000041806:c.G1086T:p.Q362H 12qD1 NA NA chr12 85074979 GCAxCCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 152 0 0 38.558086 0.354167 0.02 -0.420846 31 17 859 440 60 60 0 0 GG 23.760187 79 0 2195 0 KEEP + Psen1 YES B[a]P_3 chr12 85383001 85383001 G A intronic Acot4 NA NA ncRNA_intronic AK132490 NA NA ncRNA_intronic ENSMUSG00000086299 NA NA 12qD1 NA NA chr12 85383001 TGTxTGC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353922 0.353947 0.999931 50 0 0 20.980629 0.473684 0.02 -0.166557 10 9 270 224 60 60 0 0 GG 7.518932 25 0 685 0 KEEP + Acot4 NO B[a]P_3 chr12 85695971 85695971 T A exonic Fam161b nonsynonymous SNV NM_172581:c.A958T:p.I320F exonic Fam161b nonsynonymous SNV uc011yox.1:c.A652T:p.I218F exonic ENSMUSG00000021234 nonsynonymous SNV ENSMUST00000021659:c.A958T:p.I320F 12qD1 NA NA chr12 85695971 GGAxTCG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 70 0 0 32.867363 0.65 0.02 -0.175291 7 13 184 323 60 60 0 0 TT 11.713749 39 0 1037 0 KEEP - Fam161b NO B[a]P_3 chr12 88288383 88288383 G T UTR5 2310044G17Rik NA NA UTR5 2310044G17Rik NA NA UTR5 ENSMUSG00000034157 NA NA 12qD2 NA NA chr12 88288383 TGGxGAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 224 2 0 61.425017 0.385714 0.02 0.878343 43 27 1155 688 60 60 0 0 GG 33.070659 110 0 2951 0 KEEP + 2310044G17Rik YES B[a]P_3 chr12 88623596 88623596 C A intergenic "Ahsa1(dist=8694),Sptlc2(dist=25243)" NA NA intergenic "Ahsa1(dist=8694),Sptlc2(dist=25243)" NA NA exonic ENSMUSG00000050671 nonsynonymous SNV ENSMUST00000051601:c.G745T:p.G249C 12qD2 NA NA chr12 88623596 CACxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.289823 0.292001 0.99254 31 0 0 24.630308 0.588235 0.02 -0.148735 7 10 195 249 60 60 0 0 CC 2.707221 9 0 254 0 KEEP NA Ahsa1 YES B[a]P_3 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 302 7 42 9.862787 0.070588 0.02 0.888731 79 6 2074 164 60 60 0 0 TT 54.737132 182 0 4974 0 KEEP NA Gm2042 NO B[a]P_3 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 88 4 0 25.824806 0.352941 0.02 -0.297805 22 12 587 297 60 60 0 0 CC 13.23384 44 0 1211 0 KEEP NA Gm2042 YES B[a]P_3 chr12 89416870 89416870 G T exonic Gm10436 synonymous SNV NM_001105254:c.C153A:p.T51T exonic Gm10436 synonymous SNV uc011yps.1:c.C153A:p.T51T exonic ENSMUSG00000072907 synonymous SNV ENSMUST00000071580:c.C153A:p.T51T 12qD3 "Score=0.982175;Name=No.26143,chr12:89184682" NA chr12 89416870 GAGxGTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 280 7 19 10.619017 0.125 0.02 -0.420884 42 6 1160 156 60 20 0 0 GG 53.836761 179 0 4999 0 KEEP - Gm10436 YES B[a]P_3 chr12 91050429 91050429 C A intronic Nrxn3 NA NA intronic Nrxn3 NA NA intronic ENSMUSG00000066392 NA NA 12qD3 NA NA chr12 91050429 CTGxGAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 128 0 0 49.164161 0.434783 0.02 -0.411985 26 20 669 533 60 60 0 0 CC 20.341122 68 0 1700 0 KEEP + Nrxn3 YES B[a]P_3 chr12 92887007 92887007 G T exonic Ston2 nonsynonymous SNV NM_175367:c.C1066A:p.L356M exonic Ston2 nonsynonymous SNV uc007okt.2:c.C1066A:p.L356M exonic ENSMUSG00000020961 nonsynonymous SNV ENSMUST00000164713:c.C1066A:p.L356M 12qD3 NA NA chr12 92887007 TCAxAGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.909069 0.909069 1 132 2 3 55.959529 0.534884 0.02 -0.376959 20 23 556 579 60 60 0 0 GG 22.856205 76 0 2173 0 KEEP - Ston2 YES B[a]P_3 chr12 99927124 99927124 C A exonic Ptpn21 nonsynonymous SNV NM_001146199:c.G1793T:p.R598L exonic Ptpn21 nonsynonymous SNV uc011ypx.1:c.G515T:p.R172L exonic ENSMUSG00000021009 nonsynonymous SNV ENSMUST00000085116:c.G1793T:p.R598L 12qE NA NA chr12 99927124 ACGxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 129 2 0 51.82701 0.526316 0.02 -0.333018 18 20 430 537 60 60 0 0 CC 21.030962 70 0 1728 0 KEEP - Ptpn21 YES B[a]P_3 chr13 101110259 101110259 C A intergenic "Naip7(dist=22616),Naip1(dist=67466)" NA NA intergenic "Naip7(dist=22616),Naip1(dist=67466)" NA NA ncRNA_exonic ENSMUSG00000082956 NA NA 13qD1 "Score=0.971217;Name=No.34881,chr13:100982499" NA chr13 101110259 ACAxATT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 328 0 11 47.432071 0.16 0.02 1.782162 126 24 3418 646 60 60 0 0 CC 44.209696 147 0 4037 0 KEEP NA Naip7 YES B[a]P_3 chr13 101197179 101197179 T C exonic Naip1 nonsynonymous SNV NM_008670:c.A1432G:p.T478A exonic Naip1 nonsynonymous SNV uc007rqr.1:c.A1432G:p.T478A exonic ENSMUSG00000021640 nonsynonymous SNV ENSMUST00000022142:c.A1432G:p.T478A 13qD1 "Score=0.900692;Name=No.34880,chr13:100930003" NA chr13 101197179 AGGxTGT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 412 2 17 74.895282 0.23913 0.02 2.368715 105 33 2742 921 60 60 0 0 TT 58.597266 195 0 5307 0 KEEP - Naip1 NO B[a]P_3 chr13 101403401 101403401 C G intronic Rad17 NA NA intronic Rad17 NA NA intronic ENSMUSG00000021635 NA NA 13qD1 NA NA chr13 101403401 ACAxCTA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 202 0 0 85.775038 0.4 0.02 0.949915 51 34 1382 944 60 60 0 0 CC 25.865305 86 0 2359 0 KEEP - Rad17 NO B[a]P_3 chr13 103560795 103560795 G C intronic Mast4 NA NA intronic "AK037351,Mast4" NA NA intronic ENSMUSG00000034751 NA NA 13qD1 NA NA chr13 103560795 CCCxAGC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053733 0.054137 0.99254 21 0 0 13.886723 0.625 0.02 -0.070132 3 5 77 138 60 60 0 0 GG 2.698224 9 0 211 0 KEEP - Mast4 NO B[a]P_3 chr13 104652332 104652332 T C intronic Erbb2ip NA NA ncRNA_intronic mKIAA1225 NA NA intronic ENSMUSG00000021709 NA NA 13qD1 NA NA chr13 104652332 GACxCAT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 174 0 0 23.947566 0.166667 0.02 0.966033 60 12 1642 323 60 60 0 0 TT 21.029968 70 0 1953 0 KEEP - Erbb2ip NO B[a]P_3 chr13 105908775 105908775 C G exonic 4933425L06Rik nonsynonymous SNV NM_025751:c.C1283G:p.A428G exonic 4933425L06Rik nonsynonymous SNV uc007rtq.1:c.C1283G:p.A428G exonic ENSMUSG00000021718 nonsynonymous SNV ENSMUST00000022232:c.C1283G:p.A428G 13qD1 NA NA chr13 105908775 ATGxAGA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.999859 52 2 0 43.328236 0.533333 0.02 -0.263067 14 16 386 447 60 60 0 0 CC 5.414303 18 0 504 0 KEEP + 4933425L06Rik NO B[a]P_3 chr13 106236340 106236340 G T UTR3 Htr1a NA NA UTR3 Htr1a NA NA UTR3 ENSMUSG00000021721 NA NA 13qD1 NA NA chr13 106236340 CAAxAAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 103 0 0 32.852567 0.313725 0.02 0.860346 35 16 988 390 60 60 0 0 GG 13.838099 46 0 1316 0 KEEP + Htr1a YES B[a]P_3 chr13 113324050 113324050 C A exonic Il31ra synonymous SNV NM_139299:c.G1011T:p.A337A exonic Il31ra synonymous SNV uc007rwk.1:c.G1059T:p.A353A exonic ENSMUSG00000050377 synonymous SNV ENSMUST00000051756:c.G1011T:p.A337A 13qD2.2 NA NA chr13 113324050 CACxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 93 0 0 39.712052 0.421053 0.02 -0.332801 22 16 560 433 60 60 0 0 CC 12.32024 41 0 1032 0 KEEP - Il31ra YES B[a]P_3 chr13 113349428 113349428 C A UTR5 Il31ra NA NA exonic Il31ra nonsynonymous SNV uc007rwk.1:c.G31T:p.G11C exonic ENSMUSG00000050377 nonsynonymous SNV ENSMUST00000091226:c.G7T:p.G3C 13qD2.2 NA NA chr13 113349428 CACxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 60 0 0 29.093678 0.5 0.02 -0.21041 12 12 332 306 60 60 0 0 CC 8.422407 28 0 787 0 KEEP - Il31ra YES B[a]P_3 chr13 115758495 115758495 C A exonic Itga1 nonsynonymous SNV NM_001033228:c.G3202T:p.A1068S exonic Itga1 nonsynonymous SNV uc007rxx.1:c.G3202T:p.A1068S exonic ENSMUSG00000042284 nonsynonymous SNV ENSMUST00000061673:c.G3202T:p.A1068S 13qD2.2 NA NA chr13 115758495 TAGxAAT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668494 0.668523 0.999957 67 0 0 18.000418 0.275862 0.02 -0.254261 21 8 571 216 60 60 0 0 CC 7.817038 26 0 732 0 KEEP - Itga1 YES B[a]P_3 chr13 11670191 11670191 G T intronic Ryr2 NA NA intronic Ryr2 NA NA intronic ENSMUSG00000021313 NA NA 13qA1 NA NA chr13 11670191 TAAxAAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999999 80 1 0 11.546984 0.2 0.02 -0.263054 24 6 675 152 60 60 0 0 GG 10.528347 35 0 995 0 KEEP - Ryr2 YES B[a]P_3 chr13 117700169 117700169 T C intronic Parp8 NA NA intronic Parp8 NA NA intronic ENSMUSG00000021725 NA NA 13qD2.3 NA NA chr13 117700169 TCAxATT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 69 1 0 41.699783 0.5 0.02 -0.280521 16 16 398 437 60 60 0 0 TT 8.7185 29 0 769 0 KEEP - Parp8 NO B[a]P_3 chr13 12384001 12384001 A C exonic Actn2 nonsynonymous SNV NM_033268:c.T1033G:p.F345V exonic Actn2 nonsynonymous SNV uc007pli.1:c.T1033G:p.F345V exonic ENSMUSG00000052374 nonsynonymous SNV ENSMUST00000064204:c.T1033G:p.F345V 13qA1 NA NA chr13 12384001 TGAxGTT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 343 2 0 62.560479 0.274336 0.02 2.195361 82 31 2216 766 60 60 0 0 AA 50.224792 167 0 4608 0 KEEP - Actn2 NO B[a]P_3 chr13 13803940 13803940 G T exonic Lyst synonymous SNV NM_010748:c.G9120T:p.S3040S exonic Lyst synonymous SNV uc007pmk.1:c.G45T:p.S15S exonic ENSMUSG00000019726 synonymous SNV ENSMUST00000110559:c.G9120T:p.S3040S 13qA1 NA NA chr13 13803940 CTCxGTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 131 2 0 54.800373 0.44 0.02 1.141511 28 22 730 592 60 60 0 0 GG 16.840526 56 0 1528 0 KEEP + Lyst YES B[a]P_3 chr13 14093404 14093404 G C exonic Tbce nonsynonymous SNV NM_178337:c.C1303G:p.P435A exonic Tbce nonsynonymous SNV uc007pmp.1:c.C151G:p.P51A exonic ENSMUSG00000039233 nonsynonymous SNV ENSMUST00000039894:c.C1303G:p.P435A 13qA1 NA NA chr13 14093404 ATGxCTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 120 2 0 13.963653 0.132075 0.02 1.328818 46 7 1250 196 60 60 0 0 GG 13.234927 44 0 1231 0 KEEP - Tbce NO B[a]P_3 chr13 14370626 14370626 A C exonic Hecw1 nonsynonymous SNV NM_001081348:c.T3350G:p.I1117S exonic Hecw1 nonsynonymous SNV uc007pnf.1:c.T2243G:p.I748S exonic ENSMUSG00000021301 nonsynonymous SNV ENSMUST00000039097:c.T3350G:p.I1117S 13qA1 NA NA chr13 14370626 ACAxTCT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739604 0.739671 0.999909 64 0 0 30.433027 0.375 0.02 -0.280533 20 12 508 339 60 60 0 0 AA 7.182941 24 0 623 0 KEEP - Hecw1 NO B[a]P_3 chr13 15211086 15211086 C G intergenic "AW209491(dist=480617),Gli3(dist=344470)" NA NA intergenic "AK085253(dist=23905),Gli3(dist=343982)" NA NA intergenic "ENSMUSG00000039182(dist=480617),ENSMUSG00000089031(dist=15371)" NA NA 13qA1 NA NA chr13 15211086 CTCxTGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 59 1 0 24.944441 0.5 0.02 -0.175351 10 10 285 262 60 60 0 0 CC 9.325515 31 0 884 0 KEEP NA AW209491 NO B[a]P_3 chr13 17786448 17786448 C A intronic 5033411D12Rik NA NA ncRNA_intronic AK038969 NA NA intronic ENSMUSG00000055137 NA NA 13qA2 NA NA chr13 17786448 AGCxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05402 0.054137 0.997832 28 0 0 6.832057 0.375 0.02 -0.070139 5 3 137 77 60 60 0 0 CC 4.811026 16 0 430 0 KEEP - 5033411D12Rik YES B[a]P_3 chr13 18216967 18216967 T C UTR3 Pou6f2 NA NA UTR3 Pou6f2 NA NA UTR3 ENSMUSG00000009734 NA NA 13qA2 NA NA chr13 18216967 TGAxGCT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 132 0 0 25.82905 0.270833 0.02 -0.42065 35 13 892 318 60 60 0 0 TT 19.24681 64 0 1724 0 KEEP - Pou6f2 NO B[a]P_3 chr13 21439185 21439185 C G exonic Olfr1367 nonsynonymous SNV NM_146533:c.C387G:p.C129W exonic Olfr1367 nonsynonymous SNV uc007pqc.1:c.C387G:p.C129W exonic ENSMUSG00000045508 nonsynonymous SNV ENSMUST00000059216:c.C387G:p.C129W 13qA3.1 NA NA chr13 21439185 GTGxAAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.976865 0.976865 1 133 2 0 26.400047 0.218182 0.02 1.212974 43 12 1169 332 60 60 0 0 CC 18.045715 60 0 1656 0 KEEP + Olfr1367 NO B[a]P_3 chr13 22135645 22135645 T A upstream;downstream Hist1h2ag;Hist1h2bj NA NA upstream;downstream Hist1h2ag;Hist1h2bj NA NA upstream;downstream ENSMUSG00000069301;ENSMUSG00000069300 NA NA 13qA3.1 NA NA chr13 22135645 TAAxTTT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 126 0 0 26.997556 0.220339 0.02 1.07136 46 13 1205 343 60 60 0 0 TT 10.657348 44 1 1192 24 KEEP NA Hist1h2ag NO B[a]P_3 chr13 22864397 22864397 C T exonic Vmn1r208 synonymous SNV NM_134218:c.G798A:p.L266L exonic Vmn1r208 synonymous SNV uc007psx.1:c.G798A:p.L266L exonic ENSMUSG00000071493 synonymous SNV ENSMUST00000124841:c.G798A:p.L266L 13qA3.1 "Score=0.968406;Name=No.32680,chr13:22771330" NA chr13 22864397 CATxAGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 186 2 0 80.982611 0.485294 0.02 1.001412 35 33 960 857 60 60 0 0 CC 33.090557 110 0 3148 0 KEEP - Vmn1r208 NO B[a]P_3 chr13 23714301 23714301 C T exonic Hist1h1e synonymous SNV NM_015787:c.G66A:p.K22K exonic Hist1h1e synonymous SNV uc007puj.2:c.G66A:p.K22K exonic ENSMUSG00000051627 synonymous SNV ENSMUST00000062045:c.G66A:p.K22K 13qA3.1 NA NA chr13 23714301 CTTxTTC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09903 0.099721 0.993072 23 0 0 10.630979 0.571429 0.02 -0.08768 3 4 81 108 37 60 0 0 CC 3.299433 11 0 295 0 KEEP - Hist1h1e NO B[a]P_3 chr13 23843432 23843432 C A UTR3 Hist1h2ab NA NA UTR3 Hist1h2ab NA NA UTR3 ENSMUSG00000061615 NA NA 13qA3.1 NA NA chr13 23843432 AACxAAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 79 0 0 45.189203 0.566667 0.02 -0.26306 13 17 367 460 60 60 0 0 CC 13.535848 45 0 1277 0 KEEP + Hist1h2ab YES B[a]P_3 chr13 32873459 32873459 C A exonic Mylk4 nonsynonymous SNV NM_001166030:c.G127T:p.G43W exonic Mylk4 nonsynonymous SNV uc011yya.1:c.G127T:p.G43W exonic ENSMUSG00000044951 nonsynonymous SNV ENSMUST00000057428:c.G127T:p.G43W 13qA3.2 NA NA chr13 32873459 CCCxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 66 0 0 32.077247 0.481481 0.02 -0.236727 14 13 386 340 60 60 0 0 CC 9.023538 30 0 835 0 KEEP - Mylk4 YES B[a]P_3 chr13 3298783 3298783 C G intergenic "Speer6-ps1(dist=109859),2810429I04Rik(dist=178766)" NA NA intergenic "Speer6-ps1(dist=109859),2810429I04Rik(dist=178723)" NA NA intergenic "ENSMUSG00000091304(dist=110220),ENSMUSG00000086566(dist=178706)" NA NA 13qA1 "Score=0.941862;Name=No.38047,chr5:3258166" NA chr13 3298783 CCAxGCG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 117 2 0 101.347397 0.660377 0.02 1.212989 18 35 465 994 60 60 0 0 CC 17.137097 57 0 1497 0 KEEP NA Speer6-ps1 NO B[a]P_3 chr13 3298784 3298784 G A intergenic "Speer6-ps1(dist=109860),2810429I04Rik(dist=178765)" NA NA intergenic "Speer6-ps1(dist=109860),2810429I04Rik(dist=178722)" NA NA intergenic "ENSMUSG00000091304(dist=110221),ENSMUSG00000086566(dist=178705)" NA NA 13qA1 "Score=0.941862;Name=No.38047,chr5:3258166" NA chr13 3298784 CACxCGG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 120 2 0 91.271003 0.625 0.02 1.089354 21 35 496 907 60 60 0 0 GG 17.108341 57 0 1291 0 KEEP NA Speer6-ps1 NO B[a]P_3 chr13 35072126 35072126 G A intronic Eci2 NA NA ncRNA_intronic AK012214 NA NA ncRNA_intronic ENSMUSG00000085962 NA NA 13qA3.3 NA NA chr13 35072126 TACxTTA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 106 0 0 56.200008 0.536585 0.02 -0.368096 19 22 463 580 60 60 0 0 GG 14.416837 48 0 1145 0 KEEP - Eci2 NO B[a]P_3 chr13 41258610 41258610 T A intergenic "Gcm2(dist=53253),Elovl2(dist=19141)" NA NA intergenic "Gcm2(dist=53058),Elovl2(dist=19141)" NA NA intronic ENSMUSG00000038651 NA NA 13qA3.3 NA NA chr13 41258610 TTGxCTT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 93 0 0 61.583248 0.571429 0.02 -0.368199 18 24 473 626 60 60 0 0 TT 14.736755 49 0 1340 0 KEEP NA Gcm2 NO B[a]P_3 chr13 49156590 49156590 T C exonic Wnk2 nonsynonymous SNV NM_029361:c.A4178G:p.Q1393R exonic Wnk2 nonsynonymous SNV uc007qiu.1:c.A98G:p.Q33R exonic ENSMUSG00000037989 nonsynonymous SNV ENSMUST00000160087:c.A1604G:p.Q535R 13qA5 NA NA chr13 49156590 GGCxGGG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 211 2 0 43.496331 0.207207 0.02 2.177842 88 23 2344 571 60 60 0 0 TT 20.425954 68 0 1848 0 KEEP - Wnk2 NO B[a]P_3 chr13 49762879 49762879 G C intronic Nol8 NA NA intronic Nol8 NA NA intronic ENSMUSG00000021392 NA NA 13qA5 NA NA chr13 49762879 GTCxCAT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 70 0 0 12.952727 0.193548 0.02 -0.271696 25 6 637 167 60 60 0 0 GG 9.018108 30 0 791 0 KEEP + Nol8 NO B[a]P_3 chr13 54840290 54840290 T G exonic Gprin1 nonsynonymous SNV NM_012014:c.A1531C:p.S511R exonic Gprin1 nonsynonymous SNV uc007qpb.1:c.A1531C:p.S511R exonic ENSMUSG00000069227 nonsynonymous SNV ENSMUST00000135343:c.A1531C:p.S511R 13qB1 NA NA chr13 54840290 AACxCGT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948401 0.948402 0.999999 91 0 0 14.635316 0.166667 0.02 -0.420802 40 8 1070 202 60 60 0 0 TT 10.794851 36 0 968 0 KEEP - Gprin1 NO B[a]P_3 chr13 55504276 55504276 G T exonic Slc34a1 nonsynonymous SNV NM_011392:c.G655T:p.G219W exonic Slc34a1 nonsynonymous SNV uc007qqs.1:c.G655T:p.G219W exonic ENSMUSG00000021490 nonsynonymous SNV ENSMUST00000057167:c.G655T:p.G219W 13qB1 NA NA chr13 55504276 GCAxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918059 0.918171 0.999879 74 0 0 53.137731 0.5 0.02 -0.385758 22 22 618 559 60 60 0 0 GG 6.571906 22 0 602 0 KEEP + Slc34a1 YES B[a]P_3 chr13 55906228 55906228 G T exonic Catsper3 synonymous SNV NM_001252487:c.G576T:p.A192A exonic Catsper3 synonymous SNV uc007qsb.1:c.G537T:p.A179A exonic ENSMUSG00000021499 synonymous SNV ENSMUST00000021961:c.G576T:p.A192A 13qB1 NA NA chr13 55906228 CGCxATC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 154 1 0 81.276651 0.458333 0.02 0.96631 39 33 990 871 60 60 0 0 GG 21.032604 70 0 1768 0 KEEP + Catsper3 YES B[a]P_3 chr13 55929971 55929971 C A exonic Pitx1 nonsynonymous SNV NM_011097:c.G235T:p.G79C exonic Pitx1 nonsynonymous SNV uc007qsd.1:c.G235T:p.G79C exonic ENSMUSG00000021506 nonsynonymous SNV ENSMUST00000021968:c.G235T:p.G79C 13qB1 NA NA chr13 55929971 CGCxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 86 0 0 51.942167 0.6 0.02 -0.313871 14 21 335 523 60 60 0 0 CC 11.654569 39 0 937 0 KEEP - Pitx1 YES B[a]P_3 chr13 56638518 56638518 G C exonic Fbxl21 nonsynonymous SNV NM_178674:c.G995C:p.R332P exonic Fbxl21 nonsynonymous SNV uc011zac.1:c.G107C:p.R36P exonic ENSMUSG00000035509 nonsynonymous SNV ENSMUST00000121871:c.G1073C:p.R358P 13qB1 NA NA chr13 56638518 GCCxGAT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 157 1 0 82.655706 0.428571 0.02 0.95069 48 36 1112 904 60 60 0 0 GG 17.423908 58 0 1422 0 KEEP + Fbxl21 NO B[a]P_3 chr13 57657981 57657981 C G intronic Spock1 NA NA intronic Spock1 NA NA intronic ENSMUSG00000056222 NA NA 13qB1 NA NA chr13 57657981 GCAxAGA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 97 0 0 59.452104 0.488889 0.02 -0.394602 23 22 628 625 60 60 0 0 CC 12.330625 41 0 1129 0 KEEP - Spock1 NO B[a]P_3 chr13 60884011 60884011 T C exonic BC051665 nonsynonymous SNV NM_199148:c.A887G:p.K296R exonic BC051665 nonsynonymous SNV uc007qvp.2:c.A887G:p.K296R exonic ENSMUSG00000042243 nonsynonymous SNV ENSMUST00000026078:c.A887G:p.K296R 13qB2 NA NA chr13 60884011 TTCxTGA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999984 0.999984 1 267 3 0 56.993715 0.247619 0.02 2.274309 79 26 2137 701 60 60 0 0 TT 37.832301 126 0 3484 0 KEEP - BC051665 NO B[a]P_3 chr13 62744482 62744482 C A intergenic "6720489N17Rik(dist=18940),Mir713(dist=117617)" NA NA intergenic "6720489N17Rik(dist=18940),AK139826(dist=56284)" NA NA intergenic "ENSMUSG00000076244(dist=18821),ENSMUSG00000074863(dist=56284)" NA NA 13qB3 "Score=0.93849;Name=No.33273,chr13:62542350" NA chr13 62744482 TTAxCTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 140 0 2 45.962622 0.463415 0.02 -0.359455 22 19 599 492 60 60 1 0 CC 21.354535 71 0 1955 0 KEEP NA 6720489N17Rik YES B[a]P_3 chr13 65395660 65395660 A T intronic Zfp369 NA NA intronic Zfp369 NA NA intronic ENSMUSG00000021514 NA NA 13qB3 NA NA chr13 65395660 TCTxAGG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 95 0 0 24.475902 0.282051 0.02 -0.341852 28 11 703 293 60 60 0 0 AA 15.034889 50 0 1328 0 KEEP + Zfp369 NO B[a]P_3 chr13 74443027 74443027 C A exonic Pdcd6 nonsynonymous SNV NM_011051:c.G439T:p.A147S exonic Pdcd6 nonsynonymous SNV uc007rey.2:c.G439T:p.A147S exonic ENSMUSG00000021576 nonsynonymous SNV ENSMUST00000022060:c.G439T:p.A147S 13qC1 NA NA chr13 74443027 ATGxGAT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 71 0 0 24.710413 0.416667 0.02 -0.209841 14 10 343 270 60 60 0 0 CC 10.215298 34 0 864 0 KEEP - Pdcd6 YES B[a]P_3 chr13 74464377 74464377 T C exonic Sdha nonsynonymous SNV NM_023281:c.A1792G:p.K598E exonic Sdha nonsynonymous SNV uc007rfa.1:c.A1792G:p.K598E exonic ENSMUSG00000021577 nonsynonymous SNV ENSMUST00000022062:c.A1792G:p.K598E 13qC1 NA NA chr13 74464377 CTTxGTA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 114 2 0 38.202625 0.314815 0.02 1.11519 37 17 980 447 60 60 0 0 TT 14.136673 47 0 1302 0 KEEP - Sdha NO B[a]P_3 chr13 81242279 81242279 C A exonic Gpr98 synonymous SNV NM_054053:c.G18717T:p.G6239G exonic "Gpr98,Vlgr1" synonymous SNV uc011zcf.1:c.G4230T:p.G1410G exonic ENSMUSG00000069170 synonymous SNV ENSMUST00000128120:c.G777T:p.G259G 13qC3 NA NA chr13 81242279 GGAxCCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 59 0 0 28.386124 0.5 0.02 -0.210323 12 12 328 299 60 60 0 0 CC 7.518698 25 0 683 0 KEEP - Gpr98 YES B[a]P_3 chr13 8939996 8939996 G C intergenic "Idi1(dist=48354),Idi2(dist=12113)" NA NA intergenic "Idi1(dist=48354),Idi2(dist=12113)" NA NA exonic ENSMUSG00000061988 synonymous SNV ENSMUST00000071184:c.C228G:p.A76A 13qA1 NA NA chr13 8939996 CACxGCC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 111 0 0 35.040615 0.378378 0.02 -0.32377 23 14 571 390 60 60 0 0 GG 16.830353 56 0 1442 0 KEEP NA Idi1 NO B[a]P_3 chr13 8939997 8939997 G C intergenic "Idi1(dist=48355),Idi2(dist=12112)" NA NA intergenic "Idi1(dist=48355),Idi2(dist=12112)" NA NA exonic ENSMUSG00000061988 nonsynonymous SNV ENSMUST00000071184:c.C227G:p.A76G 13qA1 NA NA chr13 8939997 ACGxCCT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 113 0 0 37.971838 0.384615 0.02 -0.341953 24 15 659 421 60 60 0 0 GG 16.708392 56 0 1458 0 KEEP NA Idi1 NO B[a]P_3 chr13 92793630 92793630 C A exonic Rasgrf2 synonymous SNV NM_009027:c.G1182T:p.T394T exonic Rasgrf2 synonymous SNV uc007rke.2:c.G1182T:p.T394T exonic ENSMUSG00000021708 synonymous SNV ENSMUST00000099326:c.G1182T:p.T394T 13qC3 NA NA chr13 92793630 CAGxGTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 102 1 0 19.332311 0.2 0.02 -0.393516 36 9 835 248 60 60 0 0 CC 12.919609 43 0 1071 0 KEEP - Rasgrf2 YES B[a]P_3 chr13 93345770 93345770 G T exonic Spz1 nonsynonymous SNV NM_030237:c.C152A:p.P51Q exonic Spz1 nonsynonymous SNV uc007rkr.2:c.C152A:p.P51Q exonic ENSMUSG00000046957 nonsynonymous SNV ENSMUST00000050658:c.C152A:p.P51Q 13qC3 NA NA chr13 93345770 GGTxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999998 84 0 0 40.897513 0.404762 0.02 -0.368231 25 17 676 451 60 60 0 0 GG 10.220087 34 0 946 0 KEEP - Spz1 YES B[a]P_3 chr13 94111643 94111643 G A intronic Homer1 NA NA intronic Homer1 NA NA intronic ENSMUSG00000007617 NA NA 13qC3 NA NA chr13 94111643 CTCxTTA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 163 0 0 60.660824 0.438596 0.02 1.000614 32 25 739 657 60 60 0 0 GG 24.624305 82 0 1926 0 KEEP + Homer1 NO B[a]P_3 chr13 96431542 96431542 G T exonic Iqgap2 nonsynonymous SNV NM_027711:c.C3209A:p.P1070H exonic Iqgap2 nonsynonymous SNV uc007rmp.1:c.C1013A:p.P338Q exonic ENSMUSG00000021676 nonsynonymous SNV ENSMUST00000068603:c.C3209A:p.P1070H 13qD1 NA NA chr13 96431542 CACxGCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781026 0.78106 0.999957 63 0 0 34.983994 0.411765 0.02 -0.297823 20 14 436 383 60 60 0 0 GG 7.808314 26 0 620 0 KEEP - Iqgap2 YES B[a]P_3 chr13 96501230 96501230 A C intronic Iqgap2 NA NA intronic Iqgap2 NA NA intronic ENSMUSG00000021676 NA NA 13qD1 NA NA chr13 96501230 CTAxGTA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 115 0 0 17.952461 0.183673 0.02 -0.429608 40 9 1073 238 60 60 0 0 AA 16.215512 54 0 1473 0 KEEP - Iqgap2 NO B[a]P_3 chr13 97435787 97435787 C A exonic Hmgcr nonsynonymous SNV NM_008255:c.G343T:p.D115Y exonic Hmgcr nonsynonymous SNV uc007rnn.1:c.G343T:p.D115Y exonic ENSMUSG00000021670 nonsynonymous SNV ENSMUST00000170287:c.G343T:p.D115Y 13qD1 NA NA chr13 97435787 TGTxGAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668432 0.668523 0.999863 57 0 0 41.529786 0.571429 0.02 -0.245358 12 16 293 422 60 60 0 0 CC 6.012869 20 0 537 0 KEEP - Hmgcr YES B[a]P_3 chr13 97435789 97435789 A T exonic Hmgcr nonsynonymous SNV NM_008255:c.T341A:p.L114H exonic Hmgcr nonsynonymous SNV uc007rnn.1:c.T341A:p.L114H exonic ENSMUSG00000021670 nonsynonymous SNV ENSMUST00000170287:c.T341A:p.L114H 13qD1 NA NA chr13 97435789 TCGxGGA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 56 0 0 44.166957 0.607143 0.02 -0.245299 11 17 279 442 60 60 0 0 AA 6.015724 20 0 557 0 KEEP - Hmgcr NO B[a]P_3 chr13 97717565 97717565 G A UTR3 Gcnt4 NA NA UTR3 Gcnt4 NA NA UTR3 ENSMUSG00000091387 NA NA 13qD1 NA NA chr13 97717565 TGAxATG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 114 0 0 91.084494 0.673469 0.02 -0.429654 16 33 455 888 60 60 0 0 GG 15.636176 52 0 1483 0 KEEP + Gcnt4 NO B[a]P_3 chr14 112079962 112079962 G T exonic Slitrk5 nonsynonymous SNV NM_198865:c.G1795T:p.A599S exonic Slitrk5 nonsynonymous SNV uc011zpr.1:c.G1795T:p.A599S exonic ENSMUSG00000033214 nonsynonymous SNV ENSMUST00000095558:c.G1795T:p.A599S 14qE4 NA NA chr14 112079962 TTCxCAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999999 51 0 0 25.710566 1 0.02 -0.070148 0 8 0 219 0 60 0 0 GG 10.81623 36 0 889 0 KEEP + Slitrk5 YES B[a]P_3 chr14 21480901 21480901 G C exonic Synpo2l nonsynonymous SNV NM_175132:c.C1550G:p.P517R exonic Synpo2l nonsynonymous SNV uc007ske.1:c.C872G:p.P291R exonic ENSMUSG00000039376 nonsynonymous SNV ENSMUST00000119483:c.C872G:p.P291R 14qA3 NA NA chr14 21480901 CTGxGCA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 73 2 0 18.800652 0.391304 0.02 -0.201572 14 9 380 212 60 60 0 0 GG 12.33081 41 0 1133 0 KEEP - Synpo2l NO B[a]P_3 chr14 22444229 22444229 A T intronic Kat6b NA NA exonic Myst4 nonsynonymous SNV uc007slk.1:c.A1239T:p.K413N exonic ENSMUSG00000021767 nonsynonymous SNV ENSMUST00000069648:c.A1239T:p.K413N 14qA3 NA NA chr14 22444229 CAAxACC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 39 0 0 12.716119 0.315789 0.02 -0.166566 13 6 348 150 60 60 0 0 AA 5.413746 18 0 495 0 KEEP + Kat6b NO B[a]P_3 chr14 27399238 27399238 G T exonic Dennd6a stopgain SNV NM_001134465:c.G118T:p.E40X exonic Fam116a stopgain SNV uc007ssx.2:c.G118T:p.E40X exonic ENSMUSG00000040818 stopgain SNV ENSMUST00000037585:c.G118T:p.E40X 14qA3 NA NA chr14 27399238 GACxAGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 30 0 0 14.665976 0.461538 0.02 -0.113919 7 6 173 157 60 60 0 0 GG 3.907327 13 0 339 0 KEEP + Dennd6a YES B[a]P_3 chr14 32087588 32087588 T C exonic Dnah1 nonsynonymous SNV NM_001033668:c.A7976G:p.E2659G exonic Dnahc1 nonsynonymous SNV uc007sxk.2:c.A7976G:p.E2659G exonic ENSMUSG00000019027 nonsynonymous SNV ENSMUST00000048603:c.A7976G:p.E2659G 14qB NA NA chr14 32087588 TGCxCAT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 60 0 0 17.676327 0.4375 0.02 -0.140297 9 7 248 191 60 60 0 0 TT 11.429305 38 0 1056 0 KEEP - Dnah1 NO B[a]P_3 chr14 33958535 33958535 A G exonic Wdfy4 nonsynonymous SNV NM_001146022:c.T1175C:p.L392P exonic Wdfy4 nonsynonymous SNV uc007szk.2:c.T1175C:p.L392P exonic ENSMUSG00000051506 nonsynonymous SNV ENSMUST00000061753:c.T1175C:p.L392P 14qB NA NA chr14 33958535 AAAxGAT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 36 0 0 15.309581 0.428571 0.02 -0.122763 8 6 221 166 60 60 0 0 AA 5.715247 19 0 534 0 KEEP - Wdfy4 NO B[a]P_3 chr14 34783430 34783430 C G exonic Zfp488 nonsynonymous SNV NM_001013777:c.G961C:p.E321Q exonic Zfp488 nonsynonymous SNV uc007tae.1:c.G961C:p.E321Q exonic ENSMUSG00000044519 nonsynonymous SNV ENSMUST00000052871:c.G910C:p.E304Q 14qB NA NA chr14 34783430 ACTxGTG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 83 0 0 33.804966 0.464286 0.02 -0.245455 15 13 388 360 60 60 0 0 CC 13.22233 44 0 1129 0 KEEP - Zfp488 NO B[a]P_3 chr14 41971822 41971822 G T exonic Mbl1 nonsynonymous SNV NM_010775:c.G377T:p.G126V exonic Mbl1 nonsynonymous SNV uc007tcp.1:c.G377T:p.G126V exonic ENSMUSG00000037780 nonsynonymous SNV ENSMUST00000047095:c.G377T:p.G126V 14qB NA NA chr14 41971822 CTGxGAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196286 0.196312 0.999869 40 0 0 25.81512 0.714286 0.02 -0.122644 4 10 109 247 60 60 0 0 GG 6.316788 21 0 590 0 KEEP + Mbl1 YES B[a]P_3 chr14 44540370 44540370 C A exonic "Ang3,Ang5" nonsynonymous SNV NM_007448:c.C225A:p.N75K exonic "Ang3,Ang5" nonsynonymous SNV uc011zjg.1:c.C225A:p.N75K exonic ENSMUSG00000053961 nonsynonymous SNV ENSMUST00000169119:c.C225A:p.N75K 14qC1 "Score=0.964436;Name=No.53117,chr14:44568588" NA chr14 44540370 GAAxAAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 96 0 0 29.037959 0.387097 0.02 -0.271813 19 12 519 323 60 60 0 0 CC 15.63978 52 0 1439 0 KEEP NA Ang3 YES B[a]P_3 chr14 45621684 45621684 G T UTR3 Ptger2 NA NA ncRNA_UTR3 Ptger2 NA NA ncRNA_UTR3 ENSMUSG00000037759 NA NA 14qC1 NA NA chr14 45621684 CATxAGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 81 0 0 22.960236 0.4 0.02 -0.219186 15 10 418 255 60 60 0 0 GG 12.635454 42 0 1216 0 KEEP + Ptger2 YES B[a]P_3 chr14 49942104 49942104 G T exonic Slc35f4 stopgain SNV NM_029238:c.C158A:p.S53X exonic Slc35f4 stopgain SNV uc007tkf.1:c.C158A:p.S53X exonic ENSMUSG00000021852 stopgain SNV ENSMUST00000074368:c.C158A:p.S53X 14qC1 NA NA chr14 49942104 TGTxAAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 58 0 0 24.545718 0.5 0.02 -0.175335 10 10 277 258 60 60 0 0 GG 8.122578 27 0 777 0 KEEP - Slc35f4 YES B[a]P_3 chr14 54038282 54038282 T C intergenic "Olfr1507(dist=922912),A430107P09Rik(dist=247333)" NA NA exonic Gm13953 nonsynonymous SNV uc007tsb.1:c.T65C:p.M22T exonic ENSMUSG00000076826 nonsynonymous SNV ENSMUST00000103637:c.T65C:p.M22T 14qC2 "Score=0.969859;Name=No.53366,chr14:53293662" NA chr14 54038282 GAAxGCC T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 117 0 2 40.793962 0.327273 0.02 0.9831 37 18 918 473 60 70 0 0 TT 15.335667 51 0 1355 0 KEEP NA Olfr1507 NO B[a]P_3 chr14 55553901 55553901 C A intronic Il25 NA NA intronic Il25 NA NA intronic ENSMUSG00000040770 NA NA 14qC3 NA NA chr14 55553901 CACxTGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 162 2 0 42.275398 0.485714 0.02 -0.306846 18 17 488 447 60 60 0 0 CC 30.675242 102 0 2822 0 KEEP + Il25 YES B[a]P_3 chr14 56199833 56199833 G T intronic Psme1 NA NA intronic Psme1 NA NA intronic ENSMUSG00000022216 NA NA 14qC3 NA NA chr14 56199833 GCTxCTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 44 0 0 20.044886 0.444444 0.02 -0.157828 10 8 275 216 60 60 0 0 GG 5.951974 20 0 532 0 KEEP + Psme1 YES B[a]P_3 chr14 56203791 56203791 G T exonic Emc9 nonsynonymous SNV NM_033146:c.C156A:p.S52R exonic Fam158a nonsynonymous SNV uc007tze.1:c.C156A:p.S52R exonic ENSMUSG00000022217 nonsynonymous SNV ENSMUST00000022828:c.C156A:p.S52R 14qC3 NA NA chr14 56203791 ATGxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 184 0 0 62.566519 0.472727 0.02 1.017888 29 26 788 667 60 60 0 0 GG 30.632365 102 0 2772 0 KEEP - Emc9 YES B[a]P_3 chr14 56227801 56227801 A G exonic Irf9 nonsynonymous SNV NM_001159418:c.A1187G:p.E396G exonic Irf9 nonsynonymous SNV uc007tzl.2:c.A1133G:p.E378G exonic ENSMUSG00000002325 nonsynonymous SNV ENSMUST00000130697:c.A1133G:p.E378G 14qC3 NA NA chr14 56227801 CAGxAGA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 96 0 0 49.643971 0.6 0.02 -0.262634 12 18 306 498 60 60 0 0 AA 14.73898 49 0 1370 0 KEEP + Irf9 NO B[a]P_3 chr14 56506021 56506021 G C exonic Khnyn nonsynonymous SNV NM_027143:c.G894C:p.L298F exonic Khnyn nonsynonymous SNV uc007ubb.1:c.G894C:p.L298F exonic ENSMUSG00000047153 nonsynonymous SNV ENSMUST00000022831:c.G894C:p.L298F 14qC3 NA NA chr14 56506021 CTTxAAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291997 0.292001 0.999988 50 0 0 15.069656 0.352941 0.02 -0.149062 11 6 304 170 60 60 0 0 GG 8.122815 27 0 783 0 KEEP + Khnyn NO B[a]P_3 chr14 58319341 58319341 C T exonic Lats2 nonsynonymous SNV NM_015771:c.G527A:p.G176E exonic Lats2 nonsynonymous SNV uc007udk.1:c.G527A:p.G176E exonic ENSMUSG00000021959 nonsynonymous SNV ENSMUST00000022531:c.G527A:p.G176E 14qC3 NA NA chr14 58319341 TCCxCTG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 72 0 0 28.83772 0.387097 0.02 -0.271811 19 12 522 321 60 60 0 0 CC 9.925248 33 0 914 0 KEEP - Lats2 NO B[a]P_3 chr14 60248513 60248513 G T exonic Shisa2 nonsynonymous SNV NM_145463:c.G376T:p.V126F exonic Shisa2 nonsynonymous SNV uc007uer.2:c.G376T:p.V126F exonic ENSMUSG00000044461 nonsynonymous SNV ENSMUST00000053949:c.G376T:p.V126F 14qD1 NA NA chr14 60248513 TTCxTTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 234 0 0 85.594266 0.515625 0.02 1.036432 31 33 754 891 60 60 0 0 GG 40.226161 134 0 3305 0 KEEP + Shisa2 YES B[a]P_3 chr14 61310376 61310376 G T exonic Spata13 nonsynonymous SNV NM_001033272:c.G545T:p.R182M exonic Spata13 nonsynonymous SNV uc007ufc.2:c.G545T:p.R182M exonic ENSMUSG00000021990 nonsynonymous SNV ENSMUST00000022566:c.G545T:p.R182M 14qD1 NA NA chr14 61310376 GCAxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 57 0 0 13.106876 0.285714 0.02 -0.184129 15 6 416 157 60 60 0 0 GG 9.610707 32 0 893 0 KEEP + Spata13 YES B[a]P_3 chr14 61859236 61859236 C T exonic "Sacs,Sgcg" synonymous SNV NM_011892:c.G240A:p.L80L exonic "Sacs,Sgcg" synonymous SNV uc007ufs.1:c.G240A:p.L80L exonic "ENSMUSG00000035296,ENSMUSG00000048279" synonymous SNV ENSMUST00000077954:c.G240A:p.L80L 14qD1 NA NA chr14 61859236 TTCxAGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999998 63 1 0 30.790129 0.571429 0.02 -0.184115 9 12 249 313 60 60 0 0 CC 10.227538 34 0 960 0 KEEP NA Sacs NO B[a]P_3 chr14 63315675 63315675 A T exonic Ints6 nonsynonymous SNV NM_008715:c.T2219A:p.L740H exonic Ints6 nonsynonymous SNV uc007ugr.1:c.T1241A:p.L414H exonic ENSMUSG00000035161 nonsynonymous SNV ENSMUST00000053959:c.T2219A:p.L740H 14qD1 NA NA chr14 63315675 AAAxGAT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 90 0 0 28.686778 0.413793 0.02 -0.254074 17 12 453 315 60 60 0 0 AA 15.586259 52 0 1405 0 KEEP - Ints6 NO B[a]P_3 chr14 64590334 64590334 G A intronic 4930578I06Rik NA NA intronic 4930578I06Rik NA NA intronic ENSMUSG00000021961 NA NA 14qD1 NA NA chr14 64590334 GGAxGAC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119602 0.120436 0.993072 27 0 0 15.868821 0.545455 0.02 -0.096454 5 6 140 163 60 60 0 0 GG 3.308754 11 0 308 0 KEEP - 4930578I06Rik NO B[a]P_3 chr14 65408492 65408492 G T exonic Kif13b nonsynonymous SNV NM_001081177:c.G4415T:p.R1472L exonic "Kif13b,mKIAA0639" nonsynonymous SNV uc007uio.1:c.G35T:p.R12L exonic ENSMUSG00000060012 nonsynonymous SNV ENSMUST00000100473:c.G4415T:p.R1472L 14qD1 NA NA chr14 65408492 TTCxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 151 0 0 57.166237 0.52381 0.02 -0.368257 20 22 546 593 60 60 0 0 GG 27.364362 91 0 2467 0 KEEP + Kif13b YES B[a]P_3 chr14 70060545 70060545 G T exonic Loxl2 nonsynonymous SNV NM_033325:c.G640T:p.G214C exonic Loxl2 nonsynonymous SNV uc007umn.2:c.G640T:p.G214C exonic ENSMUSG00000034205 nonsynonymous SNV ENSMUST00000022660:c.G640T:p.G214C 14qD2 NA NA chr14 70060545 GAGxGCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139815 0.139832 0.999879 38 0 0 9.076198 0.363636 0.02 -0.105209 7 4 191 103 60 60 0 0 GG 6.616896 22 0 607 0 KEEP + Loxl2 YES B[a]P_3 chr14 70956151 70956151 C A intronic Hr NA NA intronic Hr NA NA exonic ENSMUSG00000022096 nonsynonymous SNV ENSMUST00000163060:c.C43A:p.P15T 14qD2 NA NA chr14 70956151 CCTxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 70 0 0 47.712009 1 0.02 -0.140233 0 16 0 401 0 60 0 0 CC 13.835397 46 0 1290 0 KEEP + Hr YES B[a]P_3 chr14 71325714 71325714 G T exonic Gfra2 nonsynonymous SNV NM_008115:c.G629T:p.R210L exonic Gfra2 nonsynonymous SNV uc007upb.1:c.G230T:p.R77L exonic ENSMUSG00000022103 nonsynonymous SNV ENSMUST00000166891:c.G230T:p.R77L 14qD2 NA NA chr14 71325714 ACCxTGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 76 0 0 46.941834 1 0.02 -0.131507 0 15 0 398 0 60 0 0 GG 13.825859 46 0 1172 0 KEEP + Gfra2 YES B[a]P_3 chr14 76956335 76956335 G T UTR5 Serp2 NA NA exonic Serp2 nonsynonymous SNV uc011zos.1:c.C146A:p.P49Q UTR5 ENSMUSG00000052584 NA NA 14qD3 NA NA chr14 76956335 CTTxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 95 1 0 31.060848 1 0.02 -0.087669 0 10 0 263 0 60 0 0 GG 19.540068 65 0 1811 0 KEEP - Serp2 YES B[a]P_3 chr14 7919233 7919233 T C intronic Gm3696 NA NA intronic "Gm10406,Gm2897,Gm3696" NA NA intronic "ENSMUSG00000072735,ENSMUSG00000091472,ENSMUSG00000092167" NA NA 14qA1 "Score=0.983805;Name=No.41877,chr14:3130473" NA chr14 7919233 CATxTCC T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054132 0.054137 0.999909 50 0 3 14.586236 0.625 0.02 -0.070156 3 5 82 145 12 37 0 0 TT 7.819232 26 0 723 0 KEEP - Gm3696 NO B[a]P_3 chr15 100480660 100480660 T C exonic Bin2 nonsynonymous SNV NM_001270537:c.A649G:p.R217G ncRNA_exonic BC141885 NA NA exonic ENSMUSG00000075411 nonsynonymous SNV ENSMUST00000100198:c.A649G:p.R217G 15qF1 NA NA chr15 100480660 CTCxCAG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 115 0 0 27.332852 0.272727 0.02 -0.385691 32 12 861 328 60 60 0 0 TT 15.899151 53 0 1429 0 KEEP - Bin2 NO B[a]P_3 chr15 101380904 101380904 C A exonic Krt82 nonsynonymous SNV NM_053249:c.G131T:p.G44V exonic Krt82 nonsynonymous SNV uc007xtn.2:c.G131T:p.G44V exonic ENSMUSG00000049548 nonsynonymous SNV ENSMUST00000023713:c.G131T:p.G44V 15qF2 NA NA chr15 101380904 CCCxCGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161255 0.162467 0.99254 23 0 0 14.163046 0.461538 0.02 -0.113967 7 6 190 152 60 60 0 0 CC 2.70348 9 0 227 0 KEEP - Krt82 YES B[a]P_3 chr15 101393031 101393031 G C exonic 4732456N10Rik nonsynonymous SNV NM_177717:c.C226G:p.R76G exonic 4732456N10Rik nonsynonymous SNV uc007xto.1:c.C226G:p.R76G exonic ENSMUSG00000048699 nonsynonymous SNV ENSMUST00000023714:c.C226G:p.R76G 15qF2 NA NA chr15 101393031 CTCxGGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 197 2 0 48.312602 0.44898 0.02 -0.437638 27 22 683 525 60 60 0 0 GG 31.951689 111 1 2782 11 KEEP - 4732456N10Rik NO B[a]P_3 chr15 101507554 101507554 C A exonic Krt6b synonymous SNV NM_010669:c.G1374T:p.L458L exonic Krt6b synonymous SNV uc007xtu.1:c.G1374T:p.L458L exonic ENSMUSG00000023041 synonymous SNV ENSMUST00000023786:c.G1374T:p.L458L 15qF2 "Score=0.925956;Name=No.57830,chr15:101520896" NA chr15 101507554 TTCxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 224 0 12 26.061669 0.178082 0.02 0.860044 60 13 1638 347 60 60 0 0 CC 33.967102 113 0 3155 0 KEEP - Krt6b YES B[a]P_3 chr15 101933564 101933564 G T exonic Tenc1 nonsynonymous SNV NM_153533:c.G47T:p.R16M exonic Tenc1 nonsynonymous SNV uc007xuo.1:c.G47T:p.R16M exonic ENSMUSG00000037003 nonsynonymous SNV ENSMUST00000046144:c.G47T:p.R16M 15qF3 NA NA chr15 101933564 GGAxGAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 95 0 0 45.953586 0.5625 0.02 -0.280563 14 18 392 469 60 60 0 0 GG 13.835724 46 0 1281 0 KEEP + Tenc1 YES B[a]P_3 chr15 10256214 10256214 C G intronic Prlr NA NA intronic Prlr NA NA intronic ENSMUSG00000005268 NA NA 15qA1 NA NA chr15 10256214 TCTxACA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 91 0 0 20.466315 0.236842 0.02 -0.332983 29 9 799 252 60 60 0 0 CC 12.032602 40 0 1146 0 KEEP + Prlr NO B[a]P_3 chr15 102821364 102821364 G T exonic Hoxc8 nonsynonymous SNV NM_010466:c.G154T:p.A52S exonic Hoxc8 nonsynonymous SNV uc012aaf.1:c.G154T:p.A52S exonic ENSMUSG00000001657 nonsynonymous SNV ENSMUST00000001703:c.G154T:p.A52S 15qF3 NA NA chr15 102821364 CACxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.99986 51 0 0 42.424392 0.571429 0.02 -0.254253 12 16 322 431 60 60 0 0 GG 5.709611 19 0 486 0 KEEP + Hoxc8 YES B[a]P_3 chr15 11318128 11318128 C G exonic Tars synonymous SNV NM_033074:c.G1335C:p.S445S exonic Tars synonymous SNV uc007vhc.1:c.G1335C:p.S445S exonic ENSMUSG00000022241 synonymous SNV ENSMUST00000022849:c.G1335C:p.S445S 15qA1 NA NA chr15 11318128 CCCxGAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 202 0 0 97.604654 0.487805 0.02 0.86136 42 40 1019 1032 60 60 0 0 CC 25.832587 86 0 2088 0 KEEP - Tars NO B[a]P_3 chr15 11788337 11788337 C A intronic Npr3 NA NA intronic Npr3 NA NA intronic ENSMUSG00000022206 NA NA 15qA1 NA NA chr15 11788337 TGGxCGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 161 0 0 69.30461 0.4375 0.02 0.938863 36 28 974 750 60 60 0 0 CC 24.360986 81 0 2210 0 KEEP - Npr3 YES B[a]P_3 chr15 12746117 12746117 C A exonic 6030458C11Rik nonsynonymous SNV NM_029998:c.G825T:p.Q275H exonic 6030458C11Rik nonsynonymous SNV uc007vhx.2:c.G522T:p.Q174H exonic ENSMUSG00000022195 nonsynonymous SNV ENSMUST00000022804:c.G522T:p.Q174H 15qA1 NA NA chr15 12746117 CTCxTGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 42 0 0 24.694197 0.555556 0.02 -0.1578 8 10 222 253 60 60 0 0 CC 5.708458 19 0 530 0 KEEP - 6030458C11Rik YES B[a]P_3 chr15 25109112 25109112 C A intergenic "Cdh18(dist=1704939),Basp1(dist=183920)" NA NA UTR5 9230109A22Rik NA NA intergenic "ENSMUSG00000051237(dist=30198),ENSMUSG00000045763(dist=183928)" NA NA 15qB1 "Score=0.992686;Name=No.59095,chr3:103883868" NA chr15 25109112 ATCxAAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999998 70 0 10 48.671913 0.941176 0.02 -0.149047 1 16 27 427 36 46 0 0 CC 10.829676 36 0 1033 0 KEEP NA Cdh18 YES B[a]P_3 chr15 25734239 25734239 C G exonic Myo10 nonsynonymous SNV NM_019472:c.C4864G:p.P1622A exonic Myo10 nonsynonymous SNV uc007vje.1:c.C2626G:p.P876A exonic ENSMUSG00000022272 nonsynonymous SNV ENSMUST00000022882:c.C2626G:p.P876A 15qB1 NA NA chr15 25734239 GTGxCCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 57 0 0 15.968566 0.296296 0.02 -0.235759 19 8 523 193 60 60 0 0 CC 8.121533 27 0 756 0 KEEP + Myo10 NO B[a]P_3 chr15 26719342 26719342 C T exonic Fbxl7 nonsynonymous SNV NM_176959:c.G53A:p.S18N exonic Fbxl7 nonsynonymous SNV uc007vjn.1:c.G53A:p.S18N exonic ENSMUSG00000043556 nonsynonymous SNV ENSMUST00000059204:c.G53A:p.S18N 15qB1 NA NA chr15 26719342 ACGxTTG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 66 0 0 12.702763 0.25 0.02 -0.210451 18 6 510 157 60 60 0 0 CC 9.325672 31 0 887 0 KEEP - Fbxl7 NO B[a]P_3 chr15 27553096 27553096 C A exonic Fam105b nonsynonymous SNV NM_001013792:c.G170T:p.R57L exonic Fam105b nonsynonymous SNV uc007vjr.1:c.G170T:p.R57L exonic ENSMUSG00000046034 nonsynonymous SNV ENSMUST00000059662:c.G170T:p.R57L 15qB1 NA NA chr15 27553096 GCAxGGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 190 0 0 77.347745 0.418919 0.02 0.948896 43 31 1028 844 60 60 0 0 CC 24.590994 82 0 1993 0 KEEP - Fam105b YES B[a]P_3 chr15 34373010 34373010 C A UTR5 Rpl30 NA NA UTR5 Rpl30 NA NA UTR5 ENSMUSG00000058600 NA NA 15qB3.1 NA NA chr15 34373010 AGGxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.99986 39 1 0 21.985322 0.529412 0.02 -0.166534 8 9 214 228 60 60 0 0 CC 5.715489 19 0 538 0 KEEP - Rpl30 YES B[a]P_3 chr15 3915793 3915793 C A splicing Fbxo4(NM_134099:exon8:c.1069-1G>T) NA NA splicing Fbxo4(uc007vcf.2:exon8:c.1069-1G>T) NA NA splicing ENSMUSG00000022184(ENSMUST00000022791:exon8:c.1069-1G>T) NA NA 15qA1 NA NA chr15 3915793 GACxTGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 182 0 0 107.651024 0.55 0.02 0.789885 36 44 1028 1106 60 60 0 0 CC 24.365949 81 0 2320 0 KEEP - Fbxo4 YES B[a]P_3 chr15 39703919 39703919 C A exonic Lrp12 nonsynonymous SNV NM_172814:c.G2219T:p.R740L exonic Lrp12 nonsynonymous SNV uc007von.1:c.G2162T:p.R721L exonic ENSMUSG00000022305 nonsynonymous SNV ENSMUST00000110305:c.G2162T:p.R721L 15qB3.1 NA NA chr15 39703919 AAGxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 102 0 0 51.851461 0.42 0.02 1.150433 29 21 701 566 60 60 0 0 CC 13.192823 44 0 1059 0 KEEP - Lrp12 YES B[a]P_3 chr15 44388494 44388494 T G exonic Pkhd1l1 synonymous SNV NM_138674:c.T9081G:p.A3027A exonic Pkhd1l1 synonymous SNV uc007vpy.1:c.T9081G:p.A3027A exonic ENSMUSG00000038725 synonymous SNV ENSMUST00000038336:c.T9081G:p.A3027A 15qB3.2 NA NA chr15 44388494 CGCxTAC T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 88 2 0 16.762743 0.266667 0.02 -0.263017 22 8 596 205 60 60 0 0 TT 12.631759 42 0 1168 0 KEEP + Pkhd1l1 NO B[a]P_3 chr15 44509219 44509219 G A exonic Sybu nonsynonymous SNV NM_001032727:c.C392T:p.P131L exonic Sybu nonsynonymous SNV uc007vqh.1:c.C392T:p.P131L exonic ENSMUSG00000022340 nonsynonymous SNV ENSMUST00000110269:c.C392T:p.P131L 15qB3.2 NA NA chr15 44509219 CTTxGGG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 96 2 0 49.555672 0.477273 0.02 -0.394222 23 21 643 528 60 60 0 0 GG 11.13041 37 0 1056 0 KEEP - Sybu NO B[a]P_3 chr15 53489887 53489887 G T intronic Samd12 NA NA intronic Samd12 NA NA intronic ENSMUSG00000058656 NA NA 15qD1 NA NA chr15 53489887 CACxAGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999999 77 0 0 17.702784 0.275862 0.02 -0.254122 21 8 522 213 60 60 0 0 GG 10.516677 35 0 883 0 KEEP - Samd12 YES B[a]P_3 chr15 54890389 54890389 C A exonic Taf2 nonsynonymous SNV NM_001081288:c.G1056T:p.Q352H exonic Taf2 nonsynonymous SNV uc007vrv.1:c.G549T:p.Q183H exonic ENSMUSG00000037343 nonsynonymous SNV ENSMUST00000041733:c.G1056T:p.Q352H 15qD1 NA NA chr15 54890389 CTGxTGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 99 4 0 34.861 0.375 0.02 -0.359478 25 15 686 392 60 60 0 0 CC 12.933451 43 0 1214 0 KEEP - Taf2 YES B[a]P_3 chr15 55240461 55240461 G A exonic Col14a1 nonsynonymous SNV NM_181277:c.G2098A:p.D700N exonic Col14a1 nonsynonymous SNV uc007vsc.2:c.G2098A:p.D700N exonic ENSMUSG00000022371 nonsynonymous SNV ENSMUST00000023053:c.G2098A:p.D700N 15qD1 NA NA chr15 55240461 GATxACG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999998 85 0 0 63.037778 0.543478 0.02 -0.403262 21 25 583 649 60 60 0 0 GG 9.92711 33 0 942 0 KEEP + Col14a1 NO B[a]P_3 chr15 58154650 58154650 G T exonic Klhl38 synonymous SNV NM_177755:c.C237A:p.G79G exonic Klhl38 synonymous SNV uc007vtl.1:c.C237A:p.G79G exonic ENSMUSG00000022357 synonymous SNV ENSMUST00000022985:c.C237A:p.G79G 15qD1 NA NA chr15 58154650 GATxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 206 0 0 119.049319 0.511111 0.02 0.808204 44 46 1219 1242 60 60 0 0 GG 26.471106 88 0 2488 0 KEEP - Klhl38 YES B[a]P_3 chr15 59847809 59847809 A C exonic 4933412E24Rik nonsynonymous SNV NM_027668:c.T336G:p.N112K exonic 4933412E24Rik nonsynonymous SNV uc011ztd.1:c.T336G:p.N112K exonic ENSMUSG00000071749 nonsynonymous SNV ENSMUST00000096421:c.T336G:p.N112K 15qD1 NA NA chr15 59847809 TAGxTTG A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 271 0 0 24.932442 0.121495 0.02 2.452399 94 13 2461 359 60 60 0 0 AA 41.341868 141 1 3839 9 KEEP - 4933412E24Rik NO B[a]P_3 chr15 66514267 66514267 A T exonic Tg synonymous SNV NM_009375:c.A1968T:p.P656P exonic Tg synonymous SNV uc007wap.1:c.A1968T:p.P656P exonic ENSMUSG00000053469 synonymous SNV ENSMUST00000065916:c.A1968T:p.P656P 15qD2 NA NA chr15 66514267 CCCxAGA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 125 1 0 57.522361 0.489362 0.02 -0.412044 24 23 632 607 60 60 0 0 AA 18.884925 63 0 1670 0 KEEP + Tg NO B[a]P_3 chr15 72793967 72793967 C A intronic Trappc9 NA NA intronic Trappc9 NA NA intronic ENSMUSG00000047921 NA NA 15qD3 NA NA chr15 72793967 GCCxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 74 0 0 48.221531 0.558824 0.02 -0.298092 15 19 416 493 60 60 0 0 CC 8.4213 28 0 776 0 KEEP - Trappc9 YES B[a]P_3 chr15 73367756 73367756 G T exonic Dennd3 nonsynonymous SNV NM_001081066:c.G1117T:p.G373W exonic Dennd3 nonsynonymous SNV uc007wce.1:c.G1117T:p.G373W exonic ENSMUSG00000036661 nonsynonymous SNV ENSMUST00000043414:c.G1117T:p.G373W 15qD3 NA NA chr15 73367756 CACxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995684 0.995687 0.999997 109 0 0 130.074454 0.691176 0.02 1.099307 21 47 474 1259 60 60 0 0 GG 9.610578 32 0 758 0 KEEP + Dennd3 YES B[a]P_3 chr15 73411595 73411595 C G UTR3 Slc45a4 NA NA UTR3 Slc45a4 NA NA UTR3 ENSMUSG00000079020 NA NA 15qD3 NA NA chr15 73411595 TCCxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 109 0 0 54.648581 0.480769 0.02 1.239656 27 25 741 584 60 60 0 0 CC 12.933287 43 0 1194 0 KEEP - Slc45a4 NO B[a]P_3 chr15 75836556 75836556 C A exonic Fam83h nonsynonymous SNV NM_001168253:c.G422T:p.R141L exonic Fam83h nonsynonymous SNV uc007wic.2:c.G422T:p.R141L exonic ENSMUSG00000046761 nonsynonymous SNV ENSMUST00000060807:c.G422T:p.R141L 15qD3 NA NA chr15 75836556 CTCxGAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.926639 0.92664 0.999999 100 2 0 61.846226 0.533333 0.02 -0.394408 21 24 542 639 60 60 0 0 CC 10.822638 36 0 951 0 KEEP - Fam83h YES B[a]P_3 chr15 76281459 76281459 G C intronic Mroh1 NA NA intronic Heatr7a NA NA intronic ENSMUSG00000022558 NA NA 15qD3 NA NA chr15 76281459 AGTxGGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934489 0.934492 0.999997 82 0 0 24.862344 0.23913 0.02 -0.403369 35 11 978 306 60 60 0 0 GG 8.42302 28 0 799 0 KEEP + Mroh1 NO B[a]P_3 chr15 76553225 76553225 C G exonic C030006K11Rik nonsynonymous SNV NM_145472:c.G400C:p.G134R exonic C030006K11Rik nonsynonymous SNV uc007wmf.2:c.G400C:p.G134R exonic ENSMUSG00000079002 nonsynonymous SNV ENSMUST00000036247:c.G400C:p.G134R 15qD3 NA NA chr15 76553225 CACxGCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.734962 0.739671 0.993634 50 2 0 44.642166 0.5625 0.02 -0.280293 14 18 346 456 60 60 0 0 CC 3.60449 12 0 291 0 KEEP - C030006K11Rik NO B[a]P_3 chr15 77360526 77360526 G T exonic Apol7c nonsynonymous SNV NM_175391:c.C35A:p.T12N exonic Apol7c nonsynonymous SNV uc007wns.1:c.C35A:p.T12N exonic ENSMUSG00000044309 nonsynonymous SNV ENSMUST00000062562:c.C35A:p.T12N 15qE1 "Score=0.96243;Name=No.57807,chr15:77429169" NA chr15 77360526 ACAxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.666177 0.668523 0.99649 58 0 7 27.678614 0.413793 0.02 -0.254251 17 12 471 305 60 60 0 0 GG 5.714941 19 0 532 0 KEEP - Apol7c YES B[a]P_3 chr15 77465998 77465998 C A exonic Apol11b nonsynonymous SNV NM_001143686:c.G311T:p.R104M exonic Apol11b nonsynonymous SNV uc011zvj.1:c.G311T:p.R104M exonic ENSMUSG00000091694 nonsynonymous SNV ENSMUST00000166623:c.G311T:p.R104M 15qE1 "Score=0.96243;Name=No.57807,chr15:77317725" NA chr15 77465998 TTCxTAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 159 0 1 106.396638 0.575342 0.02 0.957348 31 42 868 1080 60 60 0 0 CC 20.456398 68 0 1951 0 KEEP - Apol11b YES B[a]P_3 chr15 7765752 7765752 G C exonic Gdnf synonymous SNV NM_010275:c.G225C:p.A75A exonic Gdnf synonymous SNV uc007vee.1:c.G225C:p.A75A exonic ENSMUSG00000022144 synonymous SNV ENSMUST00000022744:c.G225C:p.A75A 15qA1 NA NA chr15 7765752 CGCxCTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.384582 0.387407 0.992708 37 0 0 20.272026 0.4 0.02 -0.175329 12 8 308 223 60 60 0 0 GG 3.006767 10 0 266 0 KEEP + Gdnf NO B[a]P_3 chr15 79200071 79200071 C A intronic Tmem184b NA NA intronic Tmem184b NA NA intronic ENSMUSG00000009035 NA NA 15qE1 NA NA chr15 79200071 CTCxCAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.926297 0.92664 0.99963 88 0 0 40.466407 0.386364 0.02 -0.39436 27 17 722 451 60 60 0 0 CC 8.715682 29 0 795 0 KEEP - Tmem184b YES B[a]P_3 chr15 81811458 81811458 C G UTR3 1700029P11Rik NA NA UTR3 1700029P11Rik NA NA UTR3 ENSMUSG00000061633 NA NA 15qE1 "Score=0.964775;Name=No.61375,chrX:100423024" NA chr15 81811458 CAGxGCT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.926576 0.92664 0.999931 83 0 0 62.042836 0.533333 0.02 -0.394411 21 24 527 641 60 60 0 0 CC 7.513973 25 0 641 0 KEEP + 1700029P11Rik NO B[a]P_3 chr15 84783696 84783696 T A exonic 5031439G07Rik nonsynonymous SNV NM_001033273:c.A845T:p.N282I exonic 5031439G07Rik nonsynonymous SNV uc007xcr.1:c.A845T:p.N282I exonic ENSMUSG00000036046 nonsynonymous SNV ENSMUST00000047144:c.A716T:p.N239I 15qE2 NA NA chr15 84783696 TTGxTGT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 130 0 0 9.450063 0.090909 0.02 0.921372 60 6 1598 153 60 60 0 0 TT 14.411668 48 0 1317 0 KEEP - 5031439G07Rik NO B[a]P_3 chr15 84849764 84849764 A T exonic Upk3a nonsynonymous SNV NM_023478:c.A233T:p.Q78L exonic Upk3a nonsynonymous SNV uc007xcs.2:c.A233T:p.Q78L exonic ENSMUSG00000022435 nonsynonymous SNV ENSMUST00000023070:c.A233T:p.Q78L 15qE2 NA NA chr15 84849764 TACxGGA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 191 4 0 80.542575 0.402439 0.02 0.878543 49 33 1302 888 60 60 0 0 AA 24.061191 80 0 2207 0 KEEP + Upk3a NO B[a]P_3 chr15 85809329 85809329 C G exonic Celsr1 nonsynonymous SNV NM_009886:c.G3931C:p.A1311P exonic Celsr1 nonsynonymous SNV uc007xdu.1:c.G283C:p.A95P exonic ENSMUSG00000016028 nonsynonymous SNV ENSMUST00000016172:c.G3931C:p.A1311P 15qE2 NA NA chr15 85809329 GGGxGGA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 108 0 0 83.618197 0.725 0.02 -0.403152 11 29 269 800 60 60 0 0 CC 13.806379 46 0 1102 0 KEEP - Celsr1 NO B[a]P_3 chr15 85921917 85921917 G T exonic Gramd4 synonymous SNV NM_001205353:c.G204T:p.R68R exonic Gramd4 synonymous SNV uc007xdv.2:c.G279T:p.R93R exonic ENSMUSG00000035900 synonymous SNV ENSMUST00000088931:c.G279T:p.R93R 15qE2 NA NA chr15 85921917 ACGxCCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999997 90 1 0 38.958579 0.354167 0.02 -0.420855 31 17 853 444 60 60 0 0 GG 7.65387 31 1 834 15 KEEP + Gramd4 YES B[a]P_3 chr15 85975028 85975028 T A exonic Cerk nonsynonymous SNV NM_145475:c.A1256T:p.D419V exonic Cerk nonsynonymous SNV uc007xdx.2:c.A662T:p.D221V exonic ENSMUSG00000035891 nonsynonymous SNV ENSMUST00000156546:c.A341T:p.D114V 15qE2 NA NA chr15 85975028 AGGxCAG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 113 0 0 103.348258 0.678571 0.02 1.097714 18 38 446 1005 60 60 0 0 TT 12.028607 40 0 1079 0 KEEP - Cerk NO B[a]P_3 chr15 88646625 88646625 G C exonic Alg12 nonsynonymous SNV NM_001142357:c.C37G:p.P13A exonic Alg12 nonsynonymous SNV uc007xen.2:c.C37G:p.P13A exonic ENSMUSG00000035845 nonsynonymous SNV ENSMUST00000043087:c.C37G:p.P13A 15qE3 NA NA chr15 88646625 GCGxCCA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 258 2 0 61.715696 0.227642 0.02 2.311932 95 28 2607 770 60 60 0 0 GG 26.167302 87 0 2407 0 KEEP - Alg12 NO B[a]P_3 chr15 88848629 88848629 A G exonic Mov10l1 nonsynonymous SNV NM_031260:c.A2135G:p.H712R exonic Mov10l1 nonsynonymous SNV uc007xey.1:c.A2135G:p.H712R exonic ENSMUSG00000015365 nonsynonymous SNV ENSMUST00000015509:c.A2135G:p.H712R 15qE3 NA NA chr15 88848629 GGCxCGT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612341 0.612407 0.999892 61 0 0 19.928764 0.333333 0.02 -0.236671 18 9 473 231 60 60 0 0 AA 6.917283 23 0 626 0 KEEP + Mov10l1 NO B[a]P_3 chr15 88956032 88956032 C G exonic Hdac10 nonsynonymous SNV NM_199198:c.G1226C:p.C409S exonic Hdac10 nonsynonymous SNV uc007xfj.2:c.G1226C:p.C409S exonic ENSMUSG00000062906 nonsynonymous SNV ENSMUST00000109347:c.G1076C:p.C359S 15qE3 NA NA chr15 88956032 GTGxAGA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 97 0 0 90.067537 0.64 0.02 -0.438446 18 32 503 890 60 60 0 0 CC 11.130076 37 0 1051 0 KEEP - Hdac10 NO B[a]P_3 chr15 89400335 89400335 A G exonic Acr nonsynonymous SNV NM_001205049:c.A443G:p.K148R exonic Acr nonsynonymous SNV uc007xhc.1:c.A443G:p.K148R exonic ENSMUSG00000022622 nonsynonymous SNV ENSMUST00000023295:c.A443G:p.K148R 15qE3 NA NA chr15 89400335 TGAxGAT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 72 0 0 23.496647 0.27027 0.02 -0.324436 27 10 735 281 60 60 0 0 AA 8.421728 28 0 777 0 KEEP + Acr NO B[a]P_3 chr15 90058057 90058057 G T exonic Alg10b synonymous SNV NM_001033441:c.G672T:p.T224T exonic Alg10b synonymous SNV uc007xhj.1:c.G123T:p.T41T exonic ENSMUSG00000075470 synonymous SNV ENSMUST00000100309:c.G672T:p.T224T 15qE3 NA NA chr15 90058057 CACxAAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 117 0 0 50.966292 0.343284 0.02 1.010901 44 23 1020 587 60 60 0 0 GG 11.355513 38 0 946 0 KEEP + Alg10b YES B[a]P_3 chr15 9236305 9236305 T G exonic Ugt3a1 nonsynonymous SNV NM_207216:c.T784G:p.F262V exonic Ugt3a1 nonsynonymous SNV uc007vfk.2:c.T784G:p.F262V exonic ENSMUSG00000072664 nonsynonymous SNV ENSMUST00000022861:c.T784G:p.F262V 15qA1 NA NA chr15 9236305 CTGxTTC T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 424 2 0 48.208295 0.161074 0.02 1.986289 125 24 3292 653 60 60 0 0 TT 65.815779 219 0 5953 0 KEEP + Ugt3a1 NO B[a]P_3 chr15 96529056 96529056 C A exonic Slc38a2 nonsynonymous SNV NM_175121:c.G106T:p.A36S exonic Slc38a2 nonsynonymous SNV uc007xkm.1:c.G106T:p.A36S exonic ENSMUSG00000022462 nonsynonymous SNV ENSMUST00000023099:c.G106T:p.A36S 15qF1 NA NA chr15 96529056 GAGxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800136 0.800245 0.999863 60 0 0 53.331375 0.588235 0.02 -0.306866 14 20 375 538 60 60 0 0 CC 5.995234 20 0 532 0 KEEP - Slc38a2 YES B[a]P_3 chr15 97542508 97542508 G T exonic Endou nonsynonymous SNV NM_008902:c.C1337A:p.T446K exonic Endou nonsynonymous SNV uc007xkx.1:c.C1061A:p.T354K exonic ENSMUSG00000022468 nonsynonymous SNV ENSMUST00000023105:c.C1337A:p.T446K 15qF1 NA NA chr15 97542508 GCTxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 74 0 0 28.352385 0.342857 0.02 -0.306893 23 12 633 324 60 60 0 0 GG 8.121555 27 0 762 0 KEEP - Endou YES B[a]P_3 chr15 98359853 98359853 C G exonic Kansl2 nonsynonymous SNV NM_133714:c.G577C:p.A193P exonic 2310037I24Rik nonsynonymous SNV uc007xmr.1:c.G577C:p.A193P exonic ENSMUSG00000022992 nonsynonymous SNV ENSMUST00000023727:c.G577C:p.A193P 15qF1 NA NA chr15 98359853 GAGxCAC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 154 1 6 151.531435 0.692308 0.02 0.913425 24 54 659 1467 60 60 0 0 CC 18.649129 62 0 1739 0 KEEP - Kansl2 NO B[a]P_3 chr15 98488681 98488681 G A exonic Ddx23 synonymous SNV NM_001080981:c.C186T:p.S62S exonic Ddx23 synonymous SNV uc007xne.1:c.C186T:p.S62S exonic ENSMUSG00000003360 synonymous SNV ENSMUST00000003450:c.C186T:p.S62S 15qF1 NA NA chr15 98488681 ACGxGAC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990961 0.990964 0.999997 98 0 0 38.298061 0.274194 0.02 1.053724 45 17 1239 460 60 60 0 0 GG 8.419704 28 0 769 0 KEEP - Ddx23 NO B[a]P_3 chr15 98694883 98694883 C A exonic Kmt2d synonymous SNV NM_001033276:c.G1152T:p.A384A exonic Mll2 synonymous SNV uc007xoc.2:c.G1152T:p.A384A exonic ENSMUSG00000048154 synonymous SNV ENSMUST00000023741:c.G1152T:p.A384A 15qF1 NA NA chr15 98694883 CGGxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 299 0 0 217.043208 0.568493 0.02 1.916173 63 83 1543 2208 60 60 0 0 CC 35.14662 117 0 2896 0 KEEP - Kmt2d YES B[a]P_3 chr15 99016534 99016534 A C intronic Spats2 NA NA intronic Spats2 NA NA intronic ENSMUSG00000051934 NA NA 15qF1 NA NA chr15 99016534 ATTxAGT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954489 0.954491 0.999997 85 0 0 14.319433 0.142857 0.02 -0.429601 42 7 1111 197 60 60 0 0 AA 9.323273 31 0 852 0 KEEP + Spats2 NO B[a]P_3 chr15 99549723 99549723 G C intronic Gpd1 NA NA intronic Gpd1 NA NA ncRNA_intronic ENSMUSG00000089671 NA NA 15qF1 NA NA chr15 99549723 TTGxCAT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.970817 0.97082 0.999997 83 1 0 14.60948 0.156863 0.02 1.132706 43 8 1167 204 60 60 0 0 GG 8.413899 28 0 753 0 KEEP + Gpd1 NO B[a]P_3 chr16 10788626 10788626 A G exonic Tnp2 synonymous SNV NM_013694:c.T69C:p.S23S exonic Tnp2 synonymous SNV uc007yee.1:c.T69C:p.S23S exonic ENSMUSG00000043050 synonymous SNV ENSMUST00000051297:c.T69C:p.S23S 16qA1 NA NA chr16 10788626 GTGxCTT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522098 0.522161 0.999879 50 0 0 13.733771 0.291667 0.02 -0.209149 17 7 417 167 60 60 0 0 AA 6.616123 22 0 594 0 KEEP - Tnp2 NO B[a]P_3 chr16 11116893 11116893 A T exonic Txndc11 nonsynonymous SNV NM_029582:c.T682A:p.Y228N exonic Txndc11 nonsynonymous SNV uc007yet.1:c.T682A:p.Y228N exonic ENSMUSG00000022498 nonsynonymous SNV ENSMUST00000038424:c.T682A:p.Y228N 16qA1 NA NA chr16 11116893 CATxGCT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 87 0 0 36.064362 0.375 0.02 -0.350661 25 15 645 404 60 60 0 0 AA 11.427781 38 0 1027 0 KEEP - Txndc11 NO B[a]P_3 chr16 13606341 13606341 C A intronic Parn NA NA intronic Parn NA NA intronic ENSMUSG00000022685 NA NA 16qA1 NA NA chr16 13606341 CAAxGTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 137 0 0 95.30784 0.603448 0.02 1.187183 23 35 507 955 60 60 0 0 CC 19.21784 64 0 1499 0 KEEP - Parn YES B[a]P_3 chr16 14230762 14230762 C T intronic Myh11 NA NA intronic Myh11 NA NA intronic ENSMUSG00000018830 NA NA 16qA1 NA NA chr16 14230762 GCCxTCC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 77 0 0 43.42124 0.459459 0.02 -0.324427 20 17 551 464 60 60 0 0 CC 9.32403 31 0 871 0 KEEP - Myh11 NO B[a]P_3 chr16 17559817 17559817 C A intronic 4930451C15Rik NA NA intronic 4930451C15Rik NA NA intronic ENSMUSG00000022759 NA NA 16qA3 NA NA chr16 17559817 GTCxCCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 84 0 0 41.357564 0.447368 0.02 -0.333157 21 17 571 446 60 60 0 0 CC 9.304022 31 0 843 0 KEEP - 4930451C15Rik YES B[a]P_3 chr16 18429865 18429865 G T intronic Txnrd2 NA NA ncRNA_intronic TXNRD2 NA NA intronic ENSMUSG00000075704 NA NA 16qA3 NA NA chr16 18429865 CTGxGTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 161 0 0 44.117785 0.307692 0.02 0.921317 45 20 1245 520 60 60 0 1 GG 20.69372 69 0 1922 0 KEEP + Txnrd2 YES B[a]P_3 chr16 20189550 20189550 G C exonic Yeats2 nonsynonymous SNV NM_001033237:c.G1367C:p.G456A exonic Yeats2 nonsynonymous SNV uc012acp.1:c.G1358C:p.G453A exonic ENSMUSG00000041215 nonsynonymous SNV ENSMUST00000090052:c.G1367C:p.G456A 16qA3 NA NA chr16 20189550 TTGxAGC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 205 3 0 191.694677 0.610619 0.02 2.489182 44 69 1221 1916 60 60 0 0 GG 19.546527 65 0 1846 0 KEEP + Yeats2 NO B[a]P_3 chr16 20287009 20287009 T A exonic Parl synonymous SNV NM_001005767:c.A735T:p.A245A exonic Parl synonymous SNV uc007ypm.1:c.A735T:p.A245A exonic ENSMUSG00000033918 synonymous SNV ENSMUST00000048642:c.A735T:p.A245A 16qA3 NA NA chr16 20287009 CACxGCC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997896 0.997898 0.999999 114 0 0 66.958765 0.388889 0.02 0.957297 44 28 1200 745 60 60 0 0 TT 10.526527 35 0 975 0 KEEP - Parl NO B[a]P_3 chr16 20679966 20679966 A G exonic Eif4g1 nonsynonymous SNV NM_001005331:c.A1378G:p.M460V exonic Eif4g1 nonsynonymous SNV uc007yqt.1:c.A1378G:p.M460V exonic ENSMUSG00000045983 nonsynonymous SNV ENSMUST00000073840:c.A1378G:p.M460V 16qB1 NA NA chr16 20679966 GAAxTGG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 130 0 0 77.735076 0.476923 0.02 1.116765 34 31 876 825 60 60 0 0 AA 13.207409 44 0 1189 0 KEEP + Eif4g1 NO B[a]P_3 chr16 21914221 21914221 A T intronic Map3k13 NA NA intronic Map3k13 NA NA intronic ENSMUSG00000033618 NA NA 16qB1 NA NA chr16 21914221 CCCxCAG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 118 0 0 103.18255 0.633333 0.02 1.071422 22 38 569 1022 60 60 0 0 AA 12.931805 43 0 1164 0 KEEP + Map3k13 NO B[a]P_3 chr16 22028087 22028087 G A exonic Senp2 synonymous SNV NM_029457:c.G768A:p.V256V exonic Senp2 synonymous SNV uc012adm.1:c.G525A:p.V175V exonic ENSMUSG00000022855 synonymous SNV ENSMUST00000115380:c.G627A:p.V209V 16qB1 NA NA chr16 22028087 GGTxGAG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 86 0 0 39.943505 0.6 0.02 -0.219177 10 15 266 401 60 60 0 0 GG 14.138497 47 0 1336 0 KEEP + Senp2 NO B[a]P_3 chr16 23155464 23155464 C A exonic Adipoq nonsynonymous SNV NM_009605:c.C167A:p.P56Q exonic Adipoq nonsynonymous SNV uc007ytk.1:c.C167A:p.P56Q exonic ENSMUSG00000022878 nonsynonymous SNV ENSMUST00000023593:c.C167A:p.P56Q 16qB1 NA NA chr16 23155464 CACxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 59 2 0 35.035702 0.619048 0.02 -0.184133 8 13 223 349 60 60 0 0 CC 9.01244 30 0 823 0 KEEP + Adipoq YES B[a]P_3 chr16 24977355 24977355 C T exonic Lpp synonymous SNV NM_001145954:c.C1287T:p.V429V exonic Lpp synonymous SNV uc007yuj.2:c.C75T:p.V25V exonic ENSMUSG00000033306 synonymous SNV ENSMUST00000115314:c.C1287T:p.V429V 16qB1 NA NA chr16 24977355 TGTxCGC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 167 0 0 41.886862 0.327273 0.02 1.115116 37 18 1016 484 60 60 0 0 CC 27.974277 93 0 2620 0 KEEP + Lpp NO B[a]P_3 chr16 30260902 30260902 G C exonic Cpn2 nonsynonymous SNV NM_027904:c.C66G:p.C22W exonic Cpn2 nonsynonymous SNV uc007ywm.1:c.C66G:p.C22W exonic ENSMUSG00000023176 nonsynonymous SNV ENSMUST00000064856:c.C66G:p.C22W 16qB2 NA NA chr16 30260902 GGGxCAA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 94 2 0 26.318516 0.407407 0.02 -0.245454 16 11 431 290 60 60 0 0 GG 14.104823 47 0 1272 0 KEEP - Cpn2 NO B[a]P_3 chr16 32764100 32764100 C A intronic Muc4 NA NA intronic Muc4 NA NA intronic ENSMUSG00000079620 NA NA 16qB3 NA NA chr16 32764100 ACCxACC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 56 0 0 32.642219 0.666667 0.02 -0.157828 6 12 173 319 60 60 0 0 CC 8.42303 28 0 799 0 KEEP + Muc4 YES B[a]P_3 chr16 33811858 33811858 C G exonic Muc13 nonsynonymous SNV NM_010739:c.C1283G:p.T428R exonic Muc13 nonsynonymous SNV uc007zam.1:c.C1283G:p.T428R exonic ENSMUSG00000022824 nonsynonymous SNV ENSMUST00000023520:c.C1283G:p.T428R 16qB3 NA NA chr16 33811858 TAAxGTG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.289872 0.292001 0.992708 28 0 0 46.676704 0.882353 0.02 -0.149072 2 15 54 422 60 60 0 0 CC 3.006593 10 0 263 0 KEEP + Muc13 NO B[a]P_3 chr16 39022573 39022573 C A exonic Igsf11 synonymous SNV NM_170599:c.C675A:p.T225T exonic Igsf11 synonymous SNV uc007zfp.1:c.C675A:p.T225T exonic ENSMUSG00000022790 synonymous SNV ENSMUST00000023478:c.C675A:p.T225T 16qB4 NA NA chr16 39022573 CACxTGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119538 0.120436 0.99254 20 0 0 11.791531 0.454545 0.02 -0.096439 6 5 166 127 60 60 0 0 CC 2.707225 9 0 253 0 KEEP + Igsf11 YES B[a]P_3 chr16 43610119 43610119 G T exonic Zbtb20 nonsynonymous SNV NM_181058:c.G660T:p.E220D exonic Zbtb20 nonsynonymous SNV uc007zge.2:c.G660T:p.E220D exonic ENSMUSG00000022708 nonsynonymous SNV ENSMUST00000114690:c.G660T:p.E220D 16qB4 NA NA chr16 43610119 TGAxCGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 197 0 0 127.532067 0.520408 0.02 0.640892 47 51 1299 1327 60 60 0 0 GG 21.626476 72 0 1973 0 KEEP + Zbtb20 YES B[a]P_3 chr16 43610544 43610544 G T exonic Zbtb20 nonsynonymous SNV NM_181058:c.G1085T:p.R362I exonic Zbtb20 nonsynonymous SNV uc007zge.2:c.G1085T:p.R362I exonic ENSMUSG00000022708 nonsynonymous SNV ENSMUST00000114690:c.G1085T:p.R362I 16qB4 NA NA chr16 43610544 AGAxAAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 175 2 0 115.139922 0.515789 0.02 0.756003 46 49 1299 1204 60 60 0 0 GG 20.155981 67 0 1929 0 KEEP + Zbtb20 YES B[a]P_3 chr16 43863249 43863249 G A exonic Qtrtd1 synonymous SNV NM_029128:c.C972T:p.I324I exonic Qtrtd1 synonymous SNV uc007zgj.1:c.C972T:p.I324I exonic ENSMUSG00000022704 synonymous SNV ENSMUST00000023387:c.C972T:p.I324I 16qB4 NA NA chr16 43863249 TCGxATG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 66 0 0 10.260752 0.192308 0.02 -0.22799 21 5 587 134 60 60 0 0 GG 8.122553 27 0 776 0 KEEP - Qtrtd1 NO B[a]P_3 chr16 44437265 44437265 A T exonic Wdr52 nonsynonymous SNV NM_001033247:c.A3049T:p.T1017S exonic Wdr52 nonsynonymous SNV uc012agb.1:c.A3049T:p.T1017S exonic ENSMUSG00000071550 nonsynonymous SNV ENSMUST00000120049:c.A3049T:p.T1017S 16qB4 NA NA chr16 44437265 GACxCCA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 40 1 0 30.222136 0.611111 0.02 -0.157813 7 11 179 302 60 60 0 0 AA 5.41193 18 0 477 0 KEEP + Wdr52 NO B[a]P_3 chr16 45127296 45127296 G C exonic Ccdc80 synonymous SNV NM_026439:c.G2523C:p.R841R exonic Ccdc80 synonymous SNV uc007zig.1:c.G2523C:p.R841R exonic ENSMUSG00000022665 synonymous SNV ENSMUST00000061050:c.G2523C:p.R841R 16qB5 NA NA chr16 45127296 GCGxGAA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 167 2 0 76.505739 0.477612 0.02 1.010003 35 32 967 814 60 60 0 0 GG 23.449432 78 0 2166 0 KEEP + Ccdc80 NO B[a]P_3 chr16 45629545 45629545 C A exonic BC016579 nonsynonymous SNV NM_145389:c.G622T:p.G208W exonic BC016579 nonsynonymous SNV uc012agh.1:c.G622T:p.G208W exonic ENSMUSG00000033187 nonsynonymous SNV ENSMUST00000036732:c.G622T:p.G208W 16qB5 NA NA chr16 45629545 GCCxGAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.667074 0.668523 0.997832 47 0 0 52.250039 0.655172 0.02 -0.2542 10 19 247 513 60 60 0 0 CC 4.808153 16 0 407 0 KEEP - BC016579 YES B[a]P_3 chr16 5013552 5013552 C A intronic Rogdi NA NA intronic Rogdi NA NA intronic ENSMUSG00000022540 NA NA 16qA1 NA NA chr16 5013552 GTCxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 109 0 0 21.343121 0.434783 0.02 -0.305361 13 10 357 235 60 60 0 0 CC 19.226261 64 0 1707 0 KEEP - Rogdi YES B[a]P_3 chr16 56260335 56260335 C A exonic Impg2 synonymous SNV NM_174876:c.C2388A:p.S796S exonic Impg2 synonymous SNV uc012agq.1:c.C2055A:p.S685S exonic ENSMUSG00000035270 synonymous SNV ENSMUST00000160116:c.C2061A:p.S687S 16qC1.1 NA NA chr16 56260335 GTCxAGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877587 0.877708 0.999863 63 0 0 45.566373 0.473684 0.02 -0.350734 20 18 553 484 60 60 0 0 CC 6.016371 20 0 568 0 KEEP + Impg2 YES B[a]P_3 chr16 57303805 57303805 C A exonic Cmss1 nonsynonymous SNV NM_025599:c.G735T:p.M245I exonic 2610528E23Rik nonsynonymous SNV uc007zng.2:c.G735T:p.M245I exonic ENSMUSG00000022748 nonsynonymous SNV ENSMUST00000114371:c.G735T:p.M245I 16qC1.1 NA NA chr16 57303805 GTCxATC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 79 0 0 14.063322 0.184211 0.02 -0.33299 31 7 830 186 60 60 0 0 CC 9.024491 30 0 852 0 KEEP - Cmss1 YES B[a]P_3 chr16 62800150 62800150 T G intronic Arl13b NA NA intronic Arl13b NA NA exonic ENSMUSG00000022911 nonsynonymous SNV ENSMUST00000023628:c.A384C:p.E128D 16qC1.3 NA NA chr16 62800150 CTCxTCT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 144 0 0 27.602649 0.189189 0.02 0.851212 60 14 1617 365 60 60 0 0 TT 15.94179 53 0 1480 0 KEEP - Arl13b NO B[a]P_3 chr16 77646501 77646501 G T upstream Mir125b-2 NA NA ncRNA_intronic 2810055G20Rik NA NA upstream ENSMUSG00000065472 NA NA 16qC3.1 NA NA chr16 77646501 CCTxCAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227714 0.229173 0.993634 27 0 0 24.606425 0.6 0.02 -0.131532 6 9 168 247 60 60 0 0 GG 3.610019 12 0 345 0 KEEP + Mir125b-2 YES B[a]P_3 chr16 85799327 85799327 C A exonic Adamts1 nonsynonymous SNV NM_009621:c.G1345T:p.A449S exonic Adamts1 nonsynonymous SNV uc012aho.1:c.G1345T:p.A449S exonic ENSMUSG00000022893 nonsynonymous SNV ENSMUST00000023610:c.G1345T:p.A449S 16qC3.3 NA NA chr16 85799327 AGGxACT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.320453 0.322807 0.992708 32 0 0 19.944561 0.444444 0.02 -0.157832 10 8 278 215 60 60 0 0 CC 3.007918 10 0 281 0 KEEP - Adamts1 YES B[a]P_3 chr16 8738238 8738238 C A intronic Usp7 NA NA intronic Usp7 NA NA intronic ENSMUSG00000022710 NA NA 16qA1 NA NA chr16 8738238 TCGxGTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999998 51 2 0 11.0494 0.666667 0.02 -0.070131 2 4 49 108 60 60 0 0 CC 9.86085 33 0 863 0 KEEP - Usp7 YES B[a]P_3 chr16 87957840 87957840 C G exonic Grik1 synonymous SNV NM_010348:c.G1101C:p.A367A exonic Grik1 synonymous SNV uc007zur.2:c.G1101C:p.A367A exonic ENSMUSG00000022935 synonymous SNV ENSMUST00000023652:c.G990C:p.A330A 16qC3.3 NA NA chr16 87957840 CCGxGCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 126 0 0 58.055988 0.418182 0.02 1.311863 32 23 708 633 60 60 0 0 CC 16.203069 54 0 1279 0 KEEP - Grik1 NO B[a]P_3 chr16 89508518 89508518 G T UTR5 Krtap7-1 NA NA UTR5 Krtap7-1 NA NA UTR5 ENSMUSG00000056706 NA NA 16qC3.3 NA NA chr16 89508518 GATxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.488823 0.490544 0.99649 41 0 0 37.888748 0.608696 0.02 -0.201663 9 14 242 379 60 60 0 0 GG 4.511246 15 0 410 0 KEEP - Krtap7-1 YES B[a]P_3 chr16 90554716 90554716 G C intergenic "Hunk(dist=54918),Mis18a(dist=164841)" NA NA intergenic "Hunk(dist=54918),2610039C10Rik(dist=164841)" NA NA exonic ENSMUSG00000046119 nonsynonymous SNV ENSMUST00000060246:c.G302C:p.C101S 16qC3.3 NA NA chr16 90554716 GCTxCAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.518282 0.522161 0.99257 34 0 0 12.022578 0.384615 0.02 -0.21045 8 5 222 134 60 60 0 0 GG 2.406579 8 0 228 0 KEEP NA Hunk NO B[a]P_3 chr16 92613998 92613998 C T exonic Runx1 synonymous SNV NM_009821:c.G540A:p.R180R exonic Runx1 synonymous SNV uc012ain.1:c.G540A:p.R180R exonic ENSMUSG00000022952 synonymous SNV ENSMUST00000113956:c.G540A:p.R180R 16qC4 NA NA chr16 92613998 CTGxCTG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934489 0.934492 0.999997 80 0 0 58.219855 0.5 0.02 -0.403266 23 23 615 611 60 60 0 0 CC 8.369751 28 0 731 0 KEEP - Runx1 NO B[a]P_3 chr16 94633669 94633669 G T exonic Ttc3 synonymous SNV NM_009441:c.G1236T:p.V412V exonic Ttc3 synonymous SNV uc008aay.1:c.G33T:p.V11V exonic ENSMUSG00000040785 nonsynonymous SNV ENSMUST00000139513:c.G137T:p.W46L 16qC4 NA NA chr16 94633669 GGTxGCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 65 0 0 35.853852 0.518519 0.02 -0.236731 13 14 358 373 60 60 0 0 GG 8.114646 27 0 751 0 KEEP + Ttc3 YES B[a]P_3 chr16 96215381 96215381 C A exonic Brwd1 nonsynonymous SNV NM_145125:c.G6739T:p.G2247C exonic Brwd1 nonsynonymous SNV uc008aci.2:c.G6739T:p.G2247C exonic ENSMUSG00000022914 nonsynonymous SNV ENSMUST00000023631:c.G6739T:p.G2247C 16qC4 NA NA chr16 96215381 TGCxGAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 110 1 0 69.667176 0.529412 0.02 1.24824 24 27 589 721 60 60 0 0 CC 12.955026 53 1 1375 28 KEEP - Brwd1 YES B[a]P_3 chr16 96287703 96287703 T A exonic Brwd1 nonsynonymous SNV NM_001103179:c.A538T:p.R180W exonic Brwd1 nonsynonymous SNV uc008aci.2:c.A538T:p.R180W exonic ENSMUSG00000022914 nonsynonymous SNV ENSMUST00000023631:c.A538T:p.R180W 16qC4 NA NA chr16 96287703 TCCxGTG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 38 0 0 23.172787 0.5 0.02 -0.157826 9 9 245 243 60 60 0 0 TT 5.113361 17 0 473 0 KEEP - Brwd1 NO B[a]P_3 chr16 98059195 98059195 C A exonic Prdm15 nonsynonymous SNV NM_144789:c.G349T:p.A117S exonic Prdm15 nonsynonymous SNV uc008adq.2:c.G271T:p.A91S exonic ENSMUSG00000014039 nonsynonymous SNV ENSMUST00000095849:c.G349T:p.A117S 16qC4 NA NA chr16 98059195 ATGxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 105 0 0 40.854868 0.4 0.02 -0.392918 27 18 712 454 60 60 0 0 CC 13.835032 46 0 1268 0 KEEP - Prdm15 YES B[a]P_3 chr17 12470787 12470787 C A exonic Map3k4 stopgain SNV NM_011948:c.G322T:p.E108X exonic Map3k4 stopgain SNV uc008akn.1:c.G322T:p.E108X exonic ENSMUSG00000014426 stopgain SNV ENSMUST00000074585:c.G322T:p.E108X 17qA1 NA NA chr17 12470787 CGCxTTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 200 1 0 98.394973 0.460674 0.02 0.702972 48 41 1292 1055 60 60 0 0 CC 24.617162 82 0 2260 0 KEEP - Map3k4 YES B[a]P_3 chr17 12890407 12890407 C G exonic Igf2r synonymous SNV NM_010515:c.G4929C:p.T1643T exonic Igf2r synonymous SNV uc008aky.1:c.G4929C:p.T1643T exonic ENSMUSG00000023830 synonymous SNV ENSMUST00000024599:c.G4929C:p.T1643T 17qA1 NA NA chr17 12890407 CTCxGTC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 124 2 0 58.345112 0.444444 0.02 1.12429 30 24 695 630 60 60 0 0 CC 15.321264 51 0 1257 0 KEEP - Igf2r NO B[a]P_3 chr17 12933148 12933148 C G exonic Igf2r synonymous SNV NM_010515:c.G399C:p.L133L exonic Igf2r synonymous SNV uc008aky.1:c.G399C:p.L133L exonic ENSMUSG00000023830 synonymous SNV ENSMUST00000024599:c.G399C:p.L133L 17qA1 NA NA chr17 12933148 CACxAGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 74 0 0 24.487713 0.354839 0.02 -0.271764 20 11 552 280 60 60 0 0 CC 9.325663 31 0 887 0 KEEP - Igf2r NO B[a]P_3 chr17 13567715 13567715 C T intronic Tcp10c NA NA ncRNA_intronic ENSMUSG00000052469 NA NA intronic ENSMUSG00000052469 NA NA 17qA1 "Score=0.988245;Name=No.65318,chr17:13215505" NA chr17 13567715 CAAxAGC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 0.999999 101 0 31 18.096617 0.421053 0.02 -0.166569 11 8 305 199 43 43 0 0 CC 16.543823 55 0 1558 0 KEEP + Tcp10c NO B[a]P_3 chr17 19515730 19515730 G T exonic Vmn2r99 nonsynonymous SNV NM_001104551:c.G711T:p.E237D exonic Vmn2r99 nonsynonymous SNV uc012ali.1:c.G711T:p.E237D exonic ENSMUSG00000090304 nonsynonymous SNV ENSMUST00000163870:c.G138T:p.E46D 17qA3.2 NA NA chr17 19515730 GGAxAGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 239 0 0 97.360589 0.5 0.02 0.878709 41 41 1128 1025 60 60 0 0 GG 39.680039 132 0 3729 0 KEEP + Vmn2r99 YES B[a]P_3 chr17 21290652 21290652 C G intergenic "Zfp160(dist=124832),Vmn1r234(dist=75138)" NA NA intergenic "Zfp160(dist=124832),Vmn1r234(dist=75138)" NA NA exonic ENSMUSG00000072211 nonsynonymous SNV ENSMUST00000096981:c.C1127G:p.P376R 17qA3.2 "Score=0.995797;Name=No.65513,chr17:21297710" NA chr17 21290652 CTCxCAA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.611079 0.612407 0.997832 48 0 4 36.987698 0.555556 0.02 -0.236676 12 15 335 379 37 37 0 0 CC 4.750863 16 0 427 0 KEEP NA Zfp160 NO B[a]P_3 chr17 22954561 22954561 C A ncRNA_exonic Gm16386 NA NA ncRNA_exonic Gm16386 NA NA ncRNA_exonic ENSMUSG00000073442 NA NA 17qA3.3 NA NA chr17 22954561 TGCxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 61 0 0 47.852347 0.642857 0.02 -0.25425 10 18 271 472 60 60 0 0 CC 8.11394 27 0 717 0 KEEP - Gm16386 YES B[a]P_3 chr17 23807550 23807550 C A intronic Thoc6 NA NA intronic Thoc6 NA NA intronic ENSMUSG00000041319 NA NA 17qA3.3 NA NA chr17 23807550 GCCxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 284 1 0 153.404519 0.529915 0.02 1.956889 55 62 1503 1590 60 60 0 0 CC 40.559539 135 0 3731 0 KEEP - Thoc6 YES B[a]P_3 chr17 24388230 24388230 C A intronic Ccnf NA NA intronic Ccnf NA NA exonic ENSMUSG00000072082 nonsynonymous SNV ENSMUST00000115390:c.G26T:p.W9L 17qA3.3 NA NA chr17 24388230 CGCxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 93 0 0 40.597261 0.404762 0.02 -0.376993 25 17 675 448 60 60 0 0 CC 10.528471 35 0 993 0 KEEP - Ccnf YES B[a]P_3 chr17 24404482 24404482 C A intronic Abca17 NA NA intronic Abca17 NA NA intronic ENSMUSG00000035435 NA NA 17qA3.3 NA NA chr17 24404482 AACxCCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 216 4 0 45.912975 0.236559 0.02 0.676138 71 22 1932 575 60 60 0 0 CC 27.972035 93 0 2575 0 KEEP - Abca17 YES B[a]P_3 chr17 24404597 24404597 C G exonic Abca17 nonsynonymous SNV NM_001031621:c.G4400C:p.R1467P exonic Abca17 nonsynonymous SNV uc008avk.1:c.G4400C:p.R1467P exonic ENSMUSG00000035435 nonsynonymous SNV ENSMUST00000039324:c.G4400C:p.R1467P 17qA3.3 NA NA chr17 24404597 ATAxGGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 164 0 0 96.418733 0.480519 0.02 1.011915 40 37 899 1019 60 60 0 0 CC 21.041685 74 1 1718 10 KEEP - Abca17 NO B[a]P_3 chr17 24718656 24718656 G C exonic Pkd1 nonsynonymous SNV NM_013630:c.G9326C:p.R3109P exonic Pkd1 nonsynonymous SNV uc008awv.1:c.G9326C:p.R3109P exonic ENSMUSG00000032855 nonsynonymous SNV ENSMUST00000035565:c.G9326C:p.R3109P 17qA3.3 NA NA chr17 24718656 GCCxCTT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999997 84 0 0 46.652838 0.422222 0.02 -0.403249 26 19 681 509 60 60 0 0 GG 9.320393 31 0 820 0 KEEP + Pkd1 NO B[a]P_3 chr17 25185503 25185503 T A intronic Ift140 NA NA intronic Ift140 NA NA intronic ENSMUSG00000024169 NA NA 17qA3.3 NA NA chr17 25185503 TGGxGAG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162447 0.162467 0.999879 43 0 0 12.793609 0.454545 0.02 -0.113968 6 5 154 137 60 60 0 0 TT 6.616019 22 0 592 0 KEEP + Ift140 NO B[a]P_3 chr17 25244288 25244288 C A exonic Telo2 nonsynonymous SNV NM_001163661:c.G986T:p.R329L exonic Telo2 nonsynonymous SNV uc008azq.2:c.G986T:p.R329L exonic ENSMUSG00000024170 nonsynonymous SNV ENSMUST00000024987:c.G986T:p.R329L 17qA3.3 NA NA chr17 25244288 GGCxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 71 0 0 34.877251 0.466667 0.02 -0.262939 16 14 402 372 60 60 0 0 CC 8.712672 29 0 718 0 KEEP - Telo2 YES B[a]P_3 chr17 26083520 26083520 T G intergenic "Nhlrc4(dist=1644),Capn15(dist=12981)" NA NA UTR3 Nhlrc4 NA NA ncRNA_UTR3 ENSMUSG00000025727 NA NA 17qA3.3 NA NA chr17 26083520 AGGxCAG T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 100 1 0 40.160093 0.354167 0.02 -0.420768 31 17 806 456 60 60 0 0 TT 12.323079 41 0 1087 0 KEEP NA Nhlrc4 NO B[a]P_3 chr17 26100303 26100303 A G exonic Capn15 nonsynonymous SNV NM_015830:c.T1577C:p.L526P exonic Solh nonsynonymous SNV uc008bcz.1:c.T1577C:p.L526P exonic ENSMUSG00000037326 nonsynonymous SNV ENSMUST00000041641:c.T1577C:p.L526P 17qA3.3 NA NA chr17 26100303 CTCxGCC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 133 0 0 32.612951 0.232877 0.02 0.957418 56 17 1502 417 60 60 0 0 AA 14.436554 48 0 1315 0 KEEP - Capn15 NO B[a]P_3 chr17 26226997 26226997 C A UTR5 Decr2 NA NA UTR5 Decr2 NA NA UTR5 ENSMUSG00000036775 NA NA 17qA3.3 NA NA chr17 26226997 CTGxGTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 242 0 0 134.915242 0.509804 0.02 2.30098 50 52 1165 1408 60 60 0 0 CC 32.379515 108 0 2561 0 KEEP - Decr2 YES B[a]P_3 chr17 28030319 28030319 G C intronic Uhrf1bp1 NA NA intronic Uhrf1bp1 NA NA intronic ENSMUSG00000039512 NA NA 17qA3.3 NA NA chr17 28030319 TCCxACA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 209 0 0 142.963673 0.495413 0.02 2.426361 55 54 1379 1500 60 60 0 0 GG 23.991807 80 0 2015 0 KEEP + Uhrf1bp1 NO B[a]P_3 chr17 29822856 29822856 C G exonic Cmtr1 nonsynonymous SNV NM_028791:c.C835G:p.P279A exonic Ftsjd2 nonsynonymous SNV uc008bth.1:c.C835G:p.P279A exonic "ENSMUSG00000024019,ENSMUSG00000090083" nonsynonymous SNV ENSMUST00000024816:c.C835G:p.P279A 17qA3.3 NA NA chr17 29822856 GGCxCGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 82 2 0 44.211432 0.513514 0.02 -0.324258 18 19 489 463 60 60 0 0 CC 9.593494 32 0 851 0 KEEP + Cmtr1 NO B[a]P_3 chr17 30863783 30863783 C A exonic Dnah8 nonsynonymous SNV NM_013811:c.C5488A:p.P1830T exonic Dnahc8 nonsynonymous SNV uc008bua.1:c.C5488A:p.P1830T exonic ENSMUSG00000033826 nonsynonymous SNV ENSMUST00000035963:c.C5488A:p.P1830T 17qA3.3 NA NA chr17 30863783 GATxCGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 309 0 0 41.668875 0.188034 0.02 1.861267 95 22 2632 557 60 60 0 0 CC 41.806823 139 0 3906 0 KEEP + Dnah8 YES B[a]P_3 chr17 31327969 31327969 C T exonic Tmprss3 synonymous SNV NM_080727:c.G549A:p.A183A exonic Tmprss3 synonymous SNV uc008bup.1:c.G549A:p.A183A exonic ENSMUSG00000024034 synonymous SNV ENSMUST00000024833:c.G549A:p.A183A 17qA3.3 NA NA chr17 31327969 TAAxGCC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 73 1 0 22.509626 0.322581 0.02 -0.280376 21 10 502 262 60 60 0 0 CC 9.015925 30 0 759 0 KEEP - Tmprss3 NO B[a]P_3 chr17 32226945 32226945 G C ncRNA_intronic Pdxk-ps NA NA ncRNA_intronic Pdxk-ps NA NA ncRNA_intronic ENSMUSG00000002791 NA NA 17qB1 NA NA chr17 32226945 GAAxCTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.99986 50 0 0 12.964925 0.230769 0.02 -0.22799 20 6 563 162 60 60 0 0 GG 5.715039 19 0 534 0 KEEP - Pdxk-ps NO B[a]P_3 chr17 32447579 32447579 C A exonic Akap8 nonsynonymous SNV NM_019774:c.G1331T:p.R444L exonic Akap8 nonsynonymous SNV uc012aox.1:c.G701T:p.R234L exonic ENSMUSG00000024045 nonsynonymous SNV ENSMUST00000002699:c.G1331T:p.R444L 17qB1 NA NA chr17 32447579 CGCxGTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 247 0 0 115.692951 0.48913 0.02 0.782364 47 45 1134 1219 60 60 0 0 CC 33.353979 111 0 2806 0 KEEP - Akap8 YES B[a]P_3 chr17 32533373 32533373 C A exonic Rasal3 stopgain SNV NM_178785:c.G1429T:p.E477X exonic Rasal3 stopgain SNV uc008bwv.1:c.G1429T:p.E477X exonic ENSMUSG00000052142 stopgain SNV ENSMUST00000063824:c.G1429T:p.E477X 17qB1 NA NA chr17 32533373 GCTxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 40 0 0 20.461256 0.428571 0.02 -0.184095 12 9 328 224 60 60 0 0 CC 5.11285 17 0 468 0 KEEP - Rasal3 YES B[a]P_3 chr17 32758778 32758778 C A exonic Gm9705 nonsynonymous SNV NM_001100187:c.C139A:p.R47S exonic Gm9705 nonsynonymous SNV uc008bxj.1:c.C139A:p.R47S exonic ENSMUSG00000062464 nonsynonymous SNV ENSMUST00000077639:c.C139A:p.R47S 17qB1 "Score=0.936421;Name=No.65620,chr17:32672828" NA chr17 32758778 TCCxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 291 0 0 145.438842 0.504132 0.02 1.931632 60 61 1449 1528 60 60 0 0 CC 40.197024 134 0 3287 0 KEEP + Gm9705 YES B[a]P_3 chr17 32758779 32758779 G T exonic Gm9705 nonsynonymous SNV NM_001100187:c.G140T:p.R47L exonic Gm9705 nonsynonymous SNV uc008bxj.1:c.G140T:p.R47L exonic ENSMUSG00000062464 nonsynonymous SNV ENSMUST00000077639:c.G140T:p.R47L 17qB1 "Score=0.936421;Name=No.65620,chr17:32672828" NA chr17 32758779 CCCxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 287 0 0 146.983068 0.5 0.02 2.134672 60 60 1502 1545 60 60 0 0 GG 39.651674 132 0 3404 0 KEEP + Gm9705 YES B[a]P_3 chr17 32812471 32812471 A T exonic Cyp4f40 nonsynonymous SNV NM_001101588:c.A1147T:p.M383L exonic Cyp4f40 nonsynonymous SNV uc012apc.1:c.A1147T:p.M383L exonic ENSMUSG00000090700 nonsynonymous SNV ENSMUST00000165061:c.A1147T:p.M383L 17qB1 NA NA chr17 32812471 ACCxTGT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 202 0 0 93.278014 0.445783 0.02 0.967615 46 37 1167 1004 60 60 0 0 AA 26.123941 87 0 2301 0 KEEP + Cyp4f40 NO B[a]P_3 chr17 33019697 33019697 G C exonic Zfp870 nonsynonymous SNV NM_207245:c.C1605G:p.C535W exonic Zfp870 nonsynonymous SNV uc008bxp.2:c.C1605G:p.C535W exonic ENSMUSG00000057254 nonsynonymous SNV ENSMUST00000077984:c.C1602G:p.C534W 17qB1 NA NA chr17 33019697 CCCxCAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 124 0 0 59.928256 0.5 0.02 -0.403168 23 23 564 628 60 60 0 0 GG 17.43129 58 0 1481 0 KEEP - Zfp870 NO B[a]P_3 chr17 34163401 34163401 C A exonic H2-Ke6 nonsynonymous SNV NM_013543:c.G703T:p.V235F exonic H2-Ke6 nonsynonymous SNV uc008cat.2:c.G703T:p.V235F exonic ENSMUSG00000073422 nonsynonymous SNV ENSMUST00000045467:c.G703T:p.V235F 17qB1 NA NA chr17 34163401 CAAxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 119 2 0 78.856295 0.553571 0.02 1.000271 25 31 684 808 60 60 0 0 CC 15.277589 51 0 1365 0 KEEP - H2-Ke6 YES B[a]P_3 chr17 34255512 34255512 C A intronic Brd2 NA NA intronic Brd2 NA NA intronic ENSMUSG00000024335 NA NA 17qB1 NA NA chr17 34255512 GCCxCCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999997 75 0 0 42.632183 0.548387 0.02 -0.280542 14 17 383 438 60 60 0 0 CC 9.624335 32 0 877 0 KEEP - Brd2 YES B[a]P_3 chr17 34349180 34349180 G T exonic Tap2 nonsynonymous SNV NM_011530:c.G1146T:p.M382I exonic Tap2 nonsynonymous SNV uc008cbx.2:c.G1146T:p.M382I exonic "ENSMUSG00000024339,ENSMUSG00000081512" nonsynonymous SNV ENSMUST00000025197:c.G1146T:p.M382I 17qB1 NA NA chr17 34349180 GATxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 315 0 0 186.197079 0.490196 0.02 3.442001 78 75 2149 1965 60 60 0 0 GG 30.930914 103 0 2888 0 KEEP + Tap2 YES B[a]P_3 chr17 3437289 3437289 A G exonic Tiam2 nonsynonymous SNV NM_001122998:c.A2084G:p.Y695C exonic Tiam2 nonsynonymous SNV uc008aeo.1:c.A2084G:p.Y695C exonic ENSMUSG00000023800 nonsynonymous SNV ENSMUST00000072156:c.A2084G:p.Y695C 17qA1 NA NA chr17 3437289 GCTxTTT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 111 0 0 64.646804 0.533333 0.02 -0.394503 21 24 524 667 60 60 0 0 AA 15.60831 52 0 1325 0 KEEP + Tiam2 NO B[a]P_3 chr17 34609588 34609588 G T exonic Btnl4 nonsynonymous SNV NM_030746:c.C871A:p.R291S exonic Btn3a3 nonsynonymous SNV uc012apz.1:c.C871A:p.R291S exonic ENSMUSG00000058435 nonsynonymous SNV ENSMUST00000065841:c.C871A:p.R291S 17qB1 "Score=0.916967;Name=No.65644,chr17:34629137" NA chr17 34609588 CACxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 143 1 0 59.648945 0.428571 0.02 1.106664 32 24 774 648 60 60 0 0 GG 18.333626 61 0 1562 0 KEEP - Btnl4 YES B[a]P_3 chr17 34750789 34750789 C A exonic Egfl8 nonsynonymous SNV NM_152922:c.G771T:p.W257C exonic Egfl8 nonsynonymous SNV uc008cdb.2:c.G771T:p.W257C exonic ENSMUSG00000015467 nonsynonymous SNV ENSMUST00000015611:c.G771T:p.W257C 17qB1 NA NA chr17 34750789 GCCxCAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 114 0 0 78.464607 0.561404 0.02 1.000403 25 32 685 802 60 60 0 0 CC 12.631055 42 0 1162 0 KEEP - Egfl8 YES B[a]P_3 chr17 34867816 34867816 C A exonic C4b nonsynonymous SNV NM_009780:c.G4338T:p.R1446S exonic C4b nonsynonymous SNV uc008cdk.2:c.G4338T:p.R1446S exonic ENSMUSG00000073418 nonsynonymous SNV ENSMUST00000069507:c.G4338T:p.R1446S 17qB1 "Score=0.953125;Name=No.65650,chr17:34932098" NA chr17 34867816 CCTxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 413 0 0 125.221644 0.383562 0.02 1.624668 90 56 2493 1407 60 60 0 0 CC 61.635729 205 0 5691 0 KEEP - C4b YES B[a]P_3 chr17 35060778 35060778 A C exonic Slc44a4 nonsynonymous SNV NM_023557:c.A1210C:p.M404L exonic Slc44a4 nonsynonymous SNV uc008ceh.2:c.A1210C:p.M404L exonic ENSMUSG00000007034 nonsynonymous SNV ENSMUST00000169230:c.A754C:p.M252L 17qB1 NA NA chr17 35060778 AACxTGA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 261 0 0 136.573874 0.445378 0.02 2.347351 66 53 1666 1468 60 60 0 0 AA 30.072577 100 0 2691 0 KEEP + Slc44a4 NO B[a]P_3 chr17 35284153 35284153 C A exonic Bag6 nonsynonymous SNV NM_001252468:c.C3383A:p.A1128D exonic Bat3 nonsynonymous SNV uc008cgg.1:c.C2330A:p.A777D exonic ENSMUSG00000024392 nonsynonymous SNV ENSMUST00000172571:c.C3221A:p.A1074D 17qB1 NA NA chr17 35284153 ATGxCCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 204 4 0 82.139166 0.485714 0.02 0.974982 36 34 980 870 60 60 0 0 CC 29.382285 98 0 2650 0 KEEP + Bag6 YES B[a]P_3 chr17 35291503 35291503 C A exonic Prrc2a nonsynonymous SNV NM_001199044:c.G4615T:p.V1539L exonic Prrc2a nonsynonymous SNV uc008cgj.2:c.G4615T:p.V1539L exonic ENSMUSG00000024393 nonsynonymous SNV ENSMUST00000171992:c.G4615T:p.V1539L 17qB1 NA NA chr17 35291503 CCAxCCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 136 0 0 109.129605 0.60274 0.02 0.958906 29 44 768 1096 60 60 0 0 CC 14.419586 48 0 1278 0 KEEP - Prrc2a YES B[a]P_3 chr17 35295925 35295925 C A exonic Prrc2a nonsynonymous SNV NM_001199044:c.G1718T:p.C573F exonic Prrc2a nonsynonymous SNV uc008cgj.2:c.G1718T:p.C573F exonic ENSMUSG00000024393 nonsynonymous SNV ENSMUST00000171992:c.G1718T:p.C573F 17qB1 NA NA chr17 35295925 GTGxAAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 174 1 0 99.609828 0.47619 0.02 0.852254 44 40 1214 1058 60 60 0 0 CC 22.258255 74 0 2085 0 KEEP - Prrc2a YES B[a]P_3 chr17 35651449 35651449 C A exonic Tcf19 nonsynonymous SNV NM_001163763:c.G755T:p.R252L exonic Tcf19 nonsynonymous SNV uc008chv.2:c.G755T:p.R252L exonic ENSMUSG00000050410 nonsynonymous SNV ENSMUST00000160885:c.G755T:p.R252L 17qB1 NA NA chr17 35651449 ACCxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835658 0.835716 0.999931 68 2 0 36.537113 0.416667 0.02 -0.315566 21 15 551 400 60 60 0 0 CC 7.512 25 0 654 0 KEEP - Tcf19 YES B[a]P_3 chr17 35692861 35692861 C G exonic Cdsn synonymous SNV NM_001008424:c.C1341G:p.S447S exonic Cdsn synonymous SNV uc008cia.1:c.C1341G:p.S447S exonic ENSMUSG00000039518 synonymous SNV ENSMUST00000044804:c.C1341G:p.S447S 17qB1 NA NA chr17 35692861 TTCxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 159 0 0 70.828206 0.434211 0.02 0.969311 43 33 1167 778 60 60 0 0 CC 18.035067 60 0 1660 0 KEEP + Cdsn NO B[a]P_3 chr17 35796212 35796212 C A exonic Vars2 stopgain SNV NM_175137:c.G2311T:p.E771X exonic Vars2 stopgain SNV uc008cie.2:c.G1798T:p.E600X exonic ENSMUSG00000038838 stopgain SNV ENSMUST00000043674:c.G2311T:p.E771X 17qB1 NA NA chr17 35796212 CCTxTGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 105 0 0 57.721698 0.462963 0.02 0.929966 29 25 797 620 60 60 0 0 CC 11.217601 40 1 1133 7 KEEP - Vars2 YES B[a]P_3 chr17 35796892 35796892 G C intronic Vars2 NA NA intronic Vars2 NA NA intronic ENSMUSG00000038838 NA NA 17qB1 NA NA chr17 35796892 GCGxCTT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 240 0 0 55.163303 0.204724 0.02 2.081251 101 26 2711 707 60 60 0 0 GG 28.554567 95 0 2582 0 KEEP - Vars2 NO B[a]P_3 chr17 36034778 36034778 G C exonic Atat1 nonsynonymous SNV NM_001142744:c.C1174G:p.P392A exonic Atat1 nonsynonymous SNV uc008cjc.2:c.C1105G:p.P369A exonic ENSMUSG00000024426 nonsynonymous SNV ENSMUST00000077494:c.C1105G:p.P369A 17qB1 NA NA chr17 36034778 GTGxCGC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 218 0 0 65.169534 0.281553 0.02 2.489346 74 29 1933 779 60 60 0 0 GG 27.321729 91 0 2394 0 KEEP - Atat1 NO B[a]P_3 chr17 36684947 36684947 C A exonic H2-M11 nonsynonymous SNV NM_177635:c.C433A:p.H145N exonic H2-M11 nonsynonymous SNV uc008clb.1:c.C433A:p.H145N exonic ENSMUSG00000037537 nonsynonymous SNV ENSMUST00000041964:c.C433A:p.H145N 17qB1 NA NA chr17 36684947 GACxATG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 119 0 0 81.336555 0.592593 0.02 1.12479 22 32 594 820 60 60 0 0 CC 14.137099 47 0 1327 0 KEEP + H2-M11 YES B[a]P_3 chr17 37026032 37026032 C A exonic Trim40 nonsynonymous SNV NM_001033235:c.G98T:p.R33L exonic Trim40 nonsynonymous SNV uc008clk.2:c.G98T:p.R33L exonic ENSMUSG00000073399 nonsynonymous SNV ENSMUST00000172711:c.G98T:p.R33L 17qB1 NA NA chr17 37026032 ATGxGGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 91 0 0 40.878259 0.369565 0.02 -0.402321 29 17 663 459 60 60 0 0 CC 11.120529 37 0 948 0 KEEP - Trim40 YES B[a]P_3 chr17 45611887 45611887 C A UTR5 Spats1 NA NA UTR5 Spats1 NA NA UTR5 ENSMUSG00000023935 NA NA 17qB3 NA NA chr17 45611887 ACGxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 253 0 0 114.807438 0.419643 0.02 2.199525 65 47 1558 1254 60 60 0 0 CC 27.39886 95 1 2338 9 KEEP - Spats1 YES B[a]P_3 chr17 46453548 46453548 C A exonic Abcc10 nonsynonymous SNV NM_145140:c.G1793T:p.G598V exonic Abcc10 nonsynonymous SNV uc008csn.1:c.G1793T:p.G598V exonic ENSMUSG00000032842 nonsynonymous SNV ENSMUST00000168490:c.G263T:p.G88V 17qC NA NA chr17 46453548 TTCxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 130 0 0 18.164249 0.163934 0.02 0.8685 51 10 1399 252 60 60 0 0 CC 16.842686 56 0 1555 0 KEEP - Abcc10 YES B[a]P_3 chr17 47110874 47110874 C A exonic Ubr2 nonsynonymous SNV NM_001177374:c.G1666T:p.A556S exonic Ubr2 nonsynonymous SNV uc008cup.2:c.G1666T:p.A556S exonic ENSMUSG00000023977 nonsynonymous SNV ENSMUST00000113335:c.G1666T:p.A556S 17qC NA NA chr17 47110874 GAGxACA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 64 0 0 19.944303 0.444444 0.02 -0.157836 10 8 283 215 70 70 0 0 CC 9.313172 31 0 864 0 KEEP - Ubr2 YES B[a]P_3 chr17 47748098 47748098 C G exonic Bysl nonsynonymous SNV NM_016859:c.G23C:p.R8P exonic Bysl nonsynonymous SNV uc008cvq.2:c.G23C:p.R8P exonic ENSMUSG00000023988 nonsynonymous SNV ENSMUST00000024783:c.G23C:p.R8P 17qC NA NA chr17 47748098 CCAxGTG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 90 0 0 39.431665 0.390244 0.02 -0.359194 25 16 566 437 60 60 0 0 CC 13.505797 45 0 1019 0 KEEP - Bysl NO B[a]P_3 chr17 47957897 47957897 G C exonic Mdfi nonsynonymous SNV NM_001276390:c.C350G:p.A117G exonic Mdfi nonsynonymous SNV uc008cwk.1:c.C350G:p.A117G exonic ENSMUSG00000032717 nonsynonymous SNV ENSMUST00000131971:c.C170G:p.A57G 17qC NA NA chr17 47957897 CCCxCAT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 249 0 0 135.122057 0.452174 0.02 2.463071 63 52 1617 1447 60 60 0 0 GG 32.768286 109 0 2857 0 KEEP - Mdfi NO B[a]P_3 chr17 50747450 50747450 C G exonic Plcl2 nonsynonymous SNV NM_013880:c.C2161G:p.Q721E exonic Plcl2 nonsynonymous SNV uc012avf.1:c.C2161G:p.Q721E exonic ENSMUSG00000038910 nonsynonymous SNV ENSMUST00000043938:c.C2161G:p.Q721E 17qC NA NA chr17 50747450 AGGxAGA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 133 0 0 85.294823 0.5 0.02 1.134013 32 32 886 893 60 60 0 0 CC 15.642154 52 0 1476 0 KEEP + Plcl2 NO B[a]P_3 chr17 53115097 53115097 G T intergenic "Kcnh8(dist=70553),Efhb(dist=423117)" NA NA UTR5 Kcnh8 NA NA UTR5 ENSMUSG00000073383 NA NA 17qC NA NA chr17 53115097 TTGxGCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 202 0 0 117.365971 0.505263 0.02 0.667287 47 48 1288 1231 60 60 0 0 GG 20.891624 75 1 2109 15 KEEP NA Kcnh8 YES B[a]P_3 chr17 55621383 55621383 C A exonic St6gal2 nonsynonymous SNV NM_172829:c.C119A:p.P40H exonic St6gal2 nonsynonymous SNV uc008czz.1:c.C119A:p.P40H exonic ENSMUSG00000024172 nonsynonymous SNV ENSMUST00000025000:c.C119A:p.P40H 17qC NA NA chr17 55621383 TGCxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97386 0.973965 0.999892 89 0 0 60.626589 0.462963 0.02 1.026566 29 25 792 649 60 60 0 0 CC 6.917965 23 0 642 0 KEEP + St6gal2 YES B[a]P_3 chr17 56096077 56096077 C G exonic Ebi3 synonymous SNV NM_015766:c.C564G:p.L188L exonic Ebi3 synonymous SNV uc008daj.1:c.C564G:p.L188L exonic ENSMUSG00000003206 synonymous SNV ENSMUST00000003274:c.C564G:p.L188L 17qD NA NA chr17 56096077 CCTxAGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 523 6 0 237.813157 0.446078 0.02 4.983361 113 91 3154 2553 60 60 0 0 CC 71.59127 238 0 6838 0 KEEP + Ebi3 NO B[a]P_3 chr17 56765871 56765871 C A intronic Lonp1 NA NA UTR5 Lonp1 NA NA intronic ENSMUSG00000041168 NA NA 17qD NA NA chr17 56765871 CCGxTAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 61 0 0 33.933646 0.619048 0.02 -0.184113 8 13 222 338 60 60 0 0 CC 8.661153 29 0 792 0 KEEP - Lonp1 YES B[a]P_3 chr17 56771728 56771728 G A exonic Catsperd nonsynonymous SNV NM_175350:c.G133A:p.A45T exonic Tmem146 nonsynonymous SNV uc008dcq.1:c.G133A:p.A45T exonic ENSMUSG00000040828 nonsynonymous SNV ENSMUST00000112979:c.G133A:p.A45T 17qD NA NA chr17 56771728 TACxCCT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 250 2 0 100.647129 0.518987 0.02 0.808752 38 41 919 1048 60 60 0 0 GG 39.67084 132 0 3370 0 KEEP + Catsperd NO B[a]P_3 chr17 57167361 57167361 C A intronic Khsrp NA NA intronic Khsrp NA NA intronic ENSMUSG00000007670 NA NA 17qD NA NA chr17 57167361 GCAxACA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 829 0 0 342.908901 0.527778 0.02 5.760234 119 133 3225 3552 60 60 0 0 CC 126.289998 420 0 11640 0 KEEP - Khsrp YES B[a]P_3 chr17 57330126 57330126 C G exonic Tnfsf14 nonsynonymous SNV NM_019418:c.G528C:p.E176D exonic Tnfsf14 nonsynonymous SNV uc008def.1:c.G528C:p.E176D exonic ENSMUSG00000005824 nonsynonymous SNV ENSMUST00000005976:c.G528C:p.E176D 17qD NA NA chr17 57330126 TAAxTCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 148 0 0 53.532536 0.294872 0.02 1.011288 55 23 1518 631 60 60 0 0 CC 16.844099 56 0 1565 0 KEEP - Tnfsf14 NO B[a]P_3 chr17 57382240 57382240 T A exonic Gpr108 nonsynonymous SNV NM_030084:c.A718T:p.R240W exonic Gpr108 nonsynonymous SNV uc008deh.1:c.A718T:p.R240W exonic ENSMUSG00000005823 nonsynonymous SNV ENSMUST00000005975:c.A718T:p.R240W 17qD NA NA chr17 57382240 CCCxGGA T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 126 0 0 47.543401 0.44186 0.02 -0.377022 24 19 649 513 60 60 0 0 TT 18.043742 60 0 1639 0 KEEP - Gpr108 NO B[a]P_3 chr17 6492227 6492227 C A intergenic "Tmem181b-ps(dist=42085),Dynlt1f(dist=108569)" NA NA intronic Dynlt1e NA NA ncRNA_exonic ENSMUSG00000091795 NA NA 17qA1 "Score=0.992901;Name=No.65278,chr17:6318057" NA chr17 6492227 CGCxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 181 1 3 8.979515 0.068182 0.02 0.82659 82 6 2183 156 60 60 0 0 CC 23.136152 77 0 2034 0 KEEP NA Tmem181b-ps YES B[a]P_3 chr17 6492268 6492268 C A intergenic "Tmem181b-ps(dist=42126),Dynlt1f(dist=108528)" NA NA exonic Dynlt1e stopgain SNV uc008agm.2:c.G22T:p.E8X ncRNA_exonic ENSMUSG00000091795 NA NA 17qA1 "Score=0.992901;Name=No.65278,chr17:6318057" NA chr17 6492268 CCTxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 248 1 0 23.74251 0.132075 0.02 2.159601 92 14 2409 350 60 60 0 0 CC 30.586948 102 0 2632 0 KEEP NA Tmem181b-ps YES B[a]P_3 chr17 66287163 66287163 C A exonic Twsg1 nonsynonymous SNV NM_023053:c.G198T:p.W66C exonic Twsg1 nonsynonymous SNV uc008dgq.2:c.G198T:p.W66C exonic ENSMUSG00000024098 nonsynonymous SNV ENSMUST00000024906:c.G198T:p.W66C 17qE1.1 NA NA chr17 66287163 GTCxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 69 0 0 23.888731 0.416667 0.02 -0.21043 14 10 388 262 60 60 0 0 CC 9.023385 30 0 834 0 KEEP - Twsg1 YES B[a]P_3 chr17 66319642 66319642 T G exonic Ankrd12 synonymous SNV NM_001025572:c.A5976C:p.A1992A exonic Ankrd12 synonymous SNV uc008dgs.1:c.A5976C:p.A1992A exonic ENSMUSG00000034647 synonymous SNV ENSMUST00000038116:c.A5976C:p.A1992A 17qE1.1 NA NA chr17 66319642 AGCxGCA T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 86 2 0 38.296713 0.435897 0.02 -0.350566 22 17 593 418 60 60 0 0 TT 10.827813 36 0 997 0 KEEP - Ankrd12 NO B[a]P_3 chr17 68221017 68221017 C A intronic Arhgap28 NA NA intronic Arhgap28 NA NA intronic ENSMUSG00000024043 NA NA 17qE1.2 NA NA chr17 68221017 TGCxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 82 0 0 38.020779 0.390244 0.02 -0.359487 25 16 686 423 60 60 0 0 CC 8.418786 28 0 771 0 KEEP - Arhgap28 YES B[a]P_3 chr17 72341394 72341394 C A intronic Alk NA NA intronic "Alk,mKIAA0650" NA NA intronic ENSMUSG00000055471 NA NA 17qE1.3 NA NA chr17 72341394 CTAxTTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 82 0 0 65.219413 0.581395 0.02 -0.377 18 25 491 660 60 60 0 0 CC 10.211867 34 0 904 0 KEEP - Alk YES B[a]P_3 chr17 75010504 75010504 A C exonic Birc6 synonymous SNV NM_007566:c.A5568C:p.L1856L exonic Birc6 synonymous SNV uc008dog.1:c.A1581C:p.L527L exonic ENSMUSG00000024073 synonymous SNV ENSMUST00000024879:c.A5484C:p.L1828L 17qE2 NA NA chr17 75010504 ACTxATT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 112 1 0 22.818493 0.192982 0.02 1.186813 46 11 1227 297 60 60 0 0 AA 13.232728 44 0 1198 0 KEEP + Birc6 NO B[a]P_3 chr17 75692074 75692074 C A intronic Ltbp1 NA NA intronic Ltbp1 NA NA intronic ENSMUSG00000001870 NA NA 17qE2 NA NA chr17 75692074 GGAxCAT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 55 0 0 24.78616 0.454545 0.02 -0.227894 12 10 313 266 60 60 0 0 CC 8.120369 27 0 736 0 KEEP + Ltbp1 YES B[a]P_3 chr17 80112712 80112712 C A exonic Cyp1b1 nonsynonymous SNV NM_009994:c.G940T:p.G314W exonic Cyp1b1 nonsynonymous SNV uc008dqb.1:c.G940T:p.G314W exonic ENSMUSG00000024087 nonsynonymous SNV ENSMUST00000024894:c.G940T:p.G314W 17qE3 NA NA chr17 80112712 GCCxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641263 0.641347 0.999869 50 0 0 34.544701 0.5 0.02 -0.245314 14 14 339 363 60 60 0 0 CC 4.637378 20 1 457 12 KEEP - Cyp1b1 YES B[a]P_3 chr17 81400292 81400292 T G exonic Tmem178 nonsynonymous SNV NM_026516:c.T775G:p.F259V exonic Tmem178 nonsynonymous SNV uc008drn.1:c.T775G:p.F259V exonic ENSMUSG00000024245 nonsynonymous SNV ENSMUST00000025092:c.T775G:p.F259V 17qE3 NA NA chr17 81400292 ATCxTTT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 196 0 0 7.254754 0.058824 0.02 0.852195 80 5 2151 131 60 60 0 0 TT 26.168464 87 0 2422 0 KEEP + Tmem178 NO B[a]P_3 chr17 89089335 89089335 C A exonic Gtf2a1l nonsynonymous SNV NM_023630:c.C253A:p.L85M exonic Gtf2a1l nonsynonymous SNV uc008dvt.2:c.C253A:p.L85M exonic ENSMUSG00000024154 nonsynonymous SNV ENSMUST00000024970:c.C253A:p.L85M 17qE4 NA NA chr17 89089335 CTGxTGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 271 1 0 92.058786 0.44186 0.02 0.843618 48 38 1320 996 60 60 0 0 CC 36.697829 122 0 3453 0 KEEP + Gtf2a1l YES B[a]P_3 chr18 12698315 12698315 G T exonic Lama3 synonymous SNV NM_010680:c.G7455T:p.R2485R exonic Lama3 synonymous SNV uc008ecg.1:c.G2640T:p.R880R exonic ENSMUSG00000024421 synonymous SNV ENSMUST00000163440:c.G2637T:p.R879R 18qA1 NA NA chr18 12698315 CCGxGTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 86 0 0 57.936967 0.522727 0.02 -0.385771 21 23 577 602 60 60 0 0 GG 8.422081 28 0 780 0 KEEP + Lama3 YES B[a]P_3 chr18 14942223 14942223 G T exonic Taf4b synonymous SNV NM_001100449:c.G120T:p.V40V exonic Taf4b synonymous SNV uc008edl.2:c.G120T:p.V40V exonic ENSMUSG00000054321 synonymous SNV ENSMUST00000169862:c.G120T:p.V40V 18qA1 NA NA chr18 14942223 GGTxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851873 0.851984 0.999869 63 0 0 42.059319 0.447368 0.02 -0.333159 21 17 565 453 60 60 0 0 GG 6.315766 21 0 578 0 KEEP + Taf4b YES B[a]P_3 chr18 20480666 20480666 C A intronic Dsg1a NA NA intronic Dsg1a NA NA intronic ENSMUSG00000069441 NA NA 18qA2 "Score=0.895343;Name=No.69609,chr18:20421349" NA chr18 20480666 ACCxTTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 157 0 0 47.758037 0.26506 0.02 0.772383 61 22 1679 581 60 60 0 0 CC 17.144448 57 0 1593 0 KEEP + Dsg1a YES B[a]P_3 chr18 20615478 20615478 C T exonic Dsg4 stopgain SNV NM_181564:c.C1183T:p.R395X exonic Dsg4 stopgain SNV uc008eeo.1:c.C178T:p.R60X exonic ENSMUSG00000001804 stopgain SNV ENSMUST00000019426:c.C1183T:p.R395X 18qA2 NA NA chr18 20615478 CTAxGAG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 123 3 0 88.854463 0.546875 0.02 0.930421 29 35 678 913 60 60 0 0 CC 13.519368 45 0 1107 0 KEEP + Dsg4 NO B[a]P_3 chr18 22675693 22675693 C A exonic Asxl3 nonsynonymous SNV NM_001167777:c.C2237A:p.P746Q exonic Asxl3 nonsynonymous SNV uc008efm.2:c.C2237A:p.P746Q exonic ENSMUSG00000045215 nonsynonymous SNV ENSMUST00000097655:c.C2270A:p.P757Q 18qA2 NA NA chr18 22675693 ACCxAAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 118 3 0 36.487158 0.285714 0.02 1.106392 40 16 1100 434 60 60 0 0 CC 16.845814 56 0 1596 0 KEEP + Asxl3 YES B[a]P_3 chr18 31935682 31935682 A T exonic Ammecr1l nonsynonymous SNV NM_001242430:c.A897T:p.K299N exonic Ammecr1l nonsynonymous SNV uc008eik.1:c.A198T:p.K66N exonic ENSMUSG00000041915 nonsynonymous SNV ENSMUST00000048298:c.A675T:p.K225N 18qB1 NA NA chr18 31935682 AAAxGGC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 156 1 0 117.23912 0.578313 0.02 0.773269 35 48 948 1190 60 60 0 0 AA 15.038883 50 0 1397 0 KEEP + Ammecr1l NO B[a]P_3 chr18 32119044 32119044 G A UTR3 Myo7b NA NA UTR3 Myo7b NA NA UTR3 ENSMUSG00000024388 NA NA 18qB1 NA NA chr18 32119044 GCAxATG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 203 0 0 73.471356 0.360465 0.02 0.816945 55 31 1549 831 60 60 0 0 GG 22.260273 74 0 2123 0 KEEP - Myo7b NO B[a]P_3 chr18 32121457 32121457 G A intronic Myo7b NA NA intronic Myo7b NA NA intronic ENSMUSG00000024388 NA NA 18qB1 NA NA chr18 32121457 ATGxGTA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 190 2 0 140.558084 0.595506 0.02 0.817255 36 53 979 1414 60 60 0 0 GG 22.847088 76 0 2105 0 KEEP - Myo7b NO B[a]P_3 chr18 33316467 33316467 C A exonic Camk4 nonsynonymous SNV NM_009793:c.C512A:p.P171Q exonic Camk4 nonsynonymous SNV uc008ejq.2:c.C512A:p.P171Q exonic ENSMUSG00000038128 nonsynonymous SNV ENSMUST00000042868:c.C512A:p.P171Q 18qB1 NA NA chr18 33316467 CTCxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 228 0 0 75.525469 0.355556 0.02 0.710828 58 32 1626 857 60 60 0 0 CC 30.36946 101 0 2852 0 KEEP + Camk4 YES B[a]P_3 chr18 35807414 35807414 C G intronic Mzb1 NA NA intronic 2010001M09Rik NA NA intronic ENSMUSG00000024353 NA NA 18qB2 NA NA chr18 35807414 ACCxGCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 106 0 0 45.695065 0.384615 0.02 1.239621 32 20 776 512 60 60 0 0 CC 12.572579 42 0 1055 0 KEEP - Mzb1 NO B[a]P_3 chr18 35812577 35812577 C G exonic Prob1 nonsynonymous SNV NM_001270646:c.G2277C:p.E759D intergenic "2010001M09Rik(dist=3556),Spata24(dist=3766)" NA NA exonic ENSMUSG00000073600 nonsynonymous SNV ENSMUST00000097619:c.G2265C:p.E755D 18qB2 NA NA chr18 35812577 GGCxTCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 166 1 0 32.018643 0.182796 0.02 0.68463 76 17 2100 431 60 60 0 0 CC 15.940459 53 0 1473 0 KEEP - Prob1 NO B[a]P_3 chr18 35812706 35812706 C G exonic Prob1 nonsynonymous SNV NM_001270646:c.G2148C:p.E716D intergenic "2010001M09Rik(dist=3685),Spata24(dist=3637)" NA NA exonic ENSMUSG00000073600 nonsynonymous SNV ENSMUST00000097619:c.G2136C:p.E712D 18qB2 NA NA chr18 35812706 GTTxTCT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 93 0 0 13.328994 0.134615 0.02 1.239508 45 7 1232 189 60 60 0 0 CC 11.430086 38 0 1062 0 KEEP - Prob1 NO B[a]P_3 chr18 36829697 36829697 T A exonic Sra1 nonsynonymous SNV NM_001164406:c.A148T:p.T50S exonic Sra1 nonsynonymous SNV uc008eny.2:c.A148T:p.T50S exonic ENSMUSG00000006050 nonsynonymous SNV ENSMUST00000169080:c.A112T:p.T38S 18qB2 NA NA chr18 36829697 TAGxAAG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998991 0.998993 0.999999 131 0 0 18.535539 0.131579 0.02 0.816345 66 10 1654 266 60 60 0 0 TT 10.524812 35 0 932 0 KEEP - Sra1 NO B[a]P_3 chr18 36930479 36930479 C A exonic Hars nonsynonymous SNV NM_008214:c.G803T:p.G268V exonic Hars nonsynonymous SNV uc008eop.2:c.G803T:p.G268V exonic ENSMUSG00000001380 nonsynonymous SNV ENSMUST00000001416:c.G803T:p.G268V 18qB2 NA NA chr18 36930479 TCCxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 225 4 0 131.165063 0.566667 0.02 0.702213 39 51 1058 1336 60 60 0 0 CC 27.966595 93 0 2560 0 KEEP - Hars YES B[a]P_3 chr18 36953626 36953626 G T intronic Zmat2 NA NA intronic Zmat2 NA NA intronic ENSMUSG00000001383 NA NA 18qB2 NA NA chr18 36953626 GGTxTGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 326 4 0 250.285412 0.598726 0.02 3.406767 63 94 1707 2514 60 60 0 0 GG 36.690865 122 0 3342 0 KEEP + Zmat2 YES B[a]P_3 chr18 37171180 37171180 G T exonic Pcdha11 synonymous SNV NM_009960:c.G669T:p.T223T exonic Pcdha11 synonymous SNV uc008epg.1:c.G669T:p.T223T exonic ENSMUSG00000007440 synonymous SNV ENSMUST00000115657:c.G669T:p.T223T 18qB3 NA NA chr18 37171180 CACxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 87 0 0 71.392856 0.5625 0.02 -0.420749 21 27 527 728 60 60 0 0 GG 9.311291 31 0 751 0 KEEP + Pcdha11 YES B[a]P_3 chr18 37571561 37571561 G A exonic Pcdhb10 nonsynonymous SNV NM_053135:c.G35A:p.R12K exonic Pcdhb10 nonsynonymous SNV uc008epv.1:c.G35A:p.R12K exonic ENSMUSG00000045657 nonsynonymous SNV ENSMUST00000051126:c.G35A:p.R12K 18qB3 NA NA chr18 37571561 ACAxGCA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 267 0 0 172.517488 0.681319 0.02 0.790675 29 62 798 1677 60 60 0 0 GG 43.61787 145 0 4117 0 KEEP + Pcdhb10 NO B[a]P_3 chr18 37646883 37646883 C T exonic Pcdhb17 synonymous SNV NM_053142:c.C2071T:p.L691L exonic Pcdhb17 synonymous SNV uc008eqc.1:c.C2071T:p.L691L exonic ENSMUSG00000046387 synonymous SNV ENSMUST00000053856:c.C2071T:p.L691L 18qB3 NA NA chr18 37646883 TATxTGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 623 2 0 266.230094 0.372483 0.02 5.375082 187 111 5236 2987 60 60 0 0 CC 79.418278 264 0 7553 0 KEEP + Pcdhb17 NO B[a]P_3 chr18 37680524 37680524 T G UTR3 Pcdhb22 NA NA UTR3 Pcdhb22 NA NA UTR3 ENSMUSG00000073591 NA NA 18qB3 NA NA chr18 37680524 ACGxCAC T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 143 0 0 35.568891 0.242424 0.02 1.010224 50 16 1289 438 60 60 0 0 TT 18.549687 64 1 1742 6 KEEP + Pcdhb22 NO B[a]P_3 chr18 38141784 38141784 G T exonic Arap3 synonymous SNV NM_001205336:c.C2598A:p.A866A exonic Arap3 synonymous SNV uc012bcd.1:c.C978A:p.A326A exonic ENSMUSG00000024451 synonymous SNV ENSMUST00000042944:c.C2832A:p.A944A 18qB3 NA NA chr18 38141784 GCGxGCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612333 0.612407 0.999879 56 2 0 26.019369 0.407407 0.02 -0.236727 16 11 440 287 60 60 0 0 GG 6.616994 22 0 606 0 KEEP - Arap3 YES B[a]P_3 chr18 38461465 38461465 G T intronic Rnf14 NA NA ncRNA_intronic Triad2 NA NA intronic ENSMUSG00000060450 NA NA 18qB3 NA NA chr18 38461465 GTAxACC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 85 0 0 59.633896 0.543478 0.02 -0.40323 21 25 586 615 60 60 0 0 GG 11.12881 37 0 1041 0 KEEP + Rnf14 YES B[a]P_3 chr18 42309536 42309536 G T intronic Sh3rf2 NA NA intronic Sh3rf2 NA NA intronic ENSMUSG00000057719 NA NA 18qB3 NA NA chr18 42309536 TACxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.64127 0.641347 0.999879 53 0 0 7.78269 0.181818 0.02 -0.245246 18 4 456 104 60 60 0 0 GG 6.613161 22 0 574 0 KEEP + Sh3rf2 YES B[a]P_3 chr18 42554267 42554267 C A UTR5 Pou4f3 NA NA UTR5 Pou4f3 NA NA UTR5 ENSMUSG00000024497 NA NA 18qB3 NA NA chr18 42554267 GTCxCCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 0.999999 112 0 0 28.863028 0.241379 0.02 0.98289 44 14 1209 361 60 60 0 0 CC 10.827774 36 0 1006 0 KEEP + Pou4f3 YES B[a]P_3 chr18 43504814 43504814 C A exonic Dpysl3 nonsynonymous SNV NM_001136086:c.G630T:p.M210I exonic Dpysl3 nonsynonymous SNV uc008eug.2:c.G630T:p.M210I exonic ENSMUSG00000024501 nonsynonymous SNV ENSMUST00000118071:c.G3T:p.M1I 18qB3 NA NA chr18 43504814 CAGxATC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 560 1 0 189.286974 0.352423 0.02 4.390215 147 80 4081 2151 60 60 0 0 CC 77.263194 257 0 7267 0 KEEP - Dpysl3 YES B[a]P_3 chr18 44994143 44994143 G C exonic Ythdc2 nonsynonymous SNV NM_001163013:c.G551C:p.R184P exonic Ythdc2 nonsynonymous SNV uc008evb.2:c.G551C:p.R184P exonic ENSMUSG00000034653 nonsynonymous SNV ENSMUST00000037763:c.G551C:p.R184P 18qB3 NA NA chr18 44994143 GGCxACT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 56 2 0 19.600958 0.583333 0.02 -0.105194 5 7 123 198 60 60 0 0 GG 9.013695 30 0 772 0 KEEP + Ythdc2 NO B[a]P_3 chr18 47041914 47041914 C G exonic 4833403I15Rik nonsynonymous SNV NM_029008:c.C1698G:p.D566E exonic 4833403I15Rik nonsynonymous SNV uc012bcu.1:c.C1698G:p.D566E exonic ENSMUSG00000024481 nonsynonymous SNV ENSMUST00000025358:c.C1698G:p.D566E 18qC NA NA chr18 47041914 GGAxAGC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 105 1 0 94.728411 0.761905 0.02 -0.420765 10 32 274 895 60 60 0 0 CC 13.53496 45 0 1250 0 KEEP + 4833403I15Rik NO B[a]P_3 chr18 52798699 52798699 C A exonic Zfp474 synonymous SNV NM_025749:c.C769A:p.R257R exonic Zfp474 synonymous SNV uc008exi.2:c.C769A:p.R257R exonic ENSMUSG00000046886 synonymous SNV ENSMUST00000072666:c.C769A:p.R257R 18qD1 NA NA chr18 52798699 CGTxGGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835626 0.835716 0.999892 67 1 0 44.653306 0.486486 0.02 -0.324263 19 18 476 472 60 60 0 0 CC 6.910764 23 0 583 0 KEEP + Zfp474 YES B[a]P_3 chr18 56696862 56696862 C A exonic Aldh7a1 nonsynonymous SNV NM_138600:c.G1004T:p.R335I exonic Aldh7a1 nonsynonymous SNV uc008eyn.2:c.G1004T:p.R335I exonic ENSMUSG00000053644 nonsynonymous SNV ENSMUST00000066208:c.G1004T:p.R335I 18qD3 NA NA chr18 56696862 AGTxTCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 74 0 0 27.81715 0.428571 0.02 -0.245433 16 12 426 304 60 60 0 0 CC 11.123881 37 0 996 0 KEEP - Aldh7a1 YES B[a]P_3 chr18 58208270 58208270 C G exonic Fbn2 nonsynonymous SNV NM_010181:c.G5572C:p.A1858P exonic Fbn2 nonsynonymous SNV uc008ezn.1:c.G5572C:p.A1858P exonic ENSMUSG00000024598 nonsynonymous SNV ENSMUST00000025497:c.G5572C:p.A1858P 18qD3 NA NA chr18 58208270 CCGxGTT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 146 3 0 60.195445 0.342466 0.02 1.155126 48 25 1137 686 60 60 0 0 CC 17.984103 60 0 1505 0 KEEP - Fbn2 NO B[a]P_3 chr18 58767394 58767394 G C exonic Slc27a6 nonsynonymous SNV NM_001081072:c.G1372C:p.V458L exonic Slc27a6 nonsynonymous SNV uc008ezp.1:c.G1372C:p.V458L exonic ENSMUSG00000024600 nonsynonymous SNV ENSMUST00000025500:c.G1372C:p.V458L 18qD3 NA NA chr18 58767394 GACxTGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 351 0 0 145.395453 0.404255 0.02 2.244267 84 57 2130 1595 60 60 0 0 GG 50.148555 167 0 4263 0 KEEP + Slc27a6 NO B[a]P_3 chr18 60977676 60977676 C A intronic Tcof1 NA NA intronic Tcof1 NA NA intronic ENSMUSG00000024613 NA NA 18qE1 NA NA chr18 60977676 TCCxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.999859 50 0 0 17.700051 0.275862 0.02 -0.254271 21 8 573 213 60 60 0 0 CC 5.414019 18 0 498 0 KEEP - Tcof1 YES B[a]P_3 chr18 61983539 61983539 C G exonic Ablim3 synonymous SNV NM_198649:c.G870C:p.S290S exonic Ablim3 synonymous SNV uc012bds.1:c.G870C:p.S290S exonic ENSMUSG00000032735 synonymous SNV ENSMUST00000049378:c.G870C:p.S290S 18qE1 NA NA chr18 61983539 AGGxGAC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 115 0 0 29.43452 0.25 0.02 1.143122 39 13 934 359 60 60 0 0 CC 13.182184 44 0 1062 0 KEEP - Ablim3 NO B[a]P_3 chr18 62130569 62130569 C T intronic Sh3tc2 NA NA ncRNA_intronic mKIAA1985 NA NA intronic ENSMUSG00000045629 NA NA 18qE1 NA NA chr18 62130569 ACCxCAG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 126 0 0 95.168492 0.571429 0.02 1.045038 27 36 740 967 60 60 0 0 CC 14.693129 49 0 1348 0 KEEP + Sh3tc2 NO B[a]P_3 chr18 64727747 64727747 G T exonic Atp8b1 nonsynonymous SNV NM_001001488:c.C1193A:p.T398N exonic Atp8b1 nonsynonymous SNV uc008fem.1:c.C1193A:p.T398N exonic ENSMUSG00000039529 nonsynonymous SNV ENSMUST00000025482:c.C1193A:p.T398N 18qE1 NA NA chr18 64727747 ATGxTGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 118 0 0 57.220836 0.489362 0.02 -0.412069 24 23 655 604 60 60 0 0 GG 15.940821 53 0 1468 0 KEEP - Atp8b1 YES B[a]P_3 chr18 65909284 65909284 G T exonic Oacyl nonsynonymous SNV NM_177028:c.G1795T:p.V599L exonic 5330437I02Rik nonsynonymous SNV uc012bee.1:c.G1576T:p.V526L exonic ENSMUSG00000046610 nonsynonymous SNV ENSMUST00000117694:c.G1576T:p.V526L 18qE1 NA NA chr18 65909284 CCCxTGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 220 2 0 140.833613 0.552083 0.02 0.756199 43 53 1006 1442 60 60 0 0 GG 24.332435 81 0 2017 0 KEEP + Oacyl YES B[a]P_3 chr18 67801339 67801339 G T exonic Psmg2 nonsynonymous SNV NM_134138:c.G7T:p.V3F exonic Psmg2 nonsynonymous SNV uc008fms.1:c.G7T:p.V3F exonic ENSMUSG00000024537 nonsynonymous SNV ENSMUST00000025418:c.G7T:p.V3F 18qE1 NA NA chr18 67801339 TTCxTTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 123 2 0 96.752049 0.62069 0.02 1.089047 22 36 534 963 60 60 0 0 GG 13.478845 45 0 1119 0 KEEP + Psmg2 YES B[a]P_3 chr18 74090195 74090195 C A exonic Mapk4 nonsynonymous SNV NM_172632:c.G1609T:p.V537L exonic Mapk4 nonsynonymous SNV uc008fpa.1:c.G898T:p.V300L exonic ENSMUSG00000024558 nonsynonymous SNV ENSMUST00000091851:c.G1609T:p.V537L 18qE2 NA NA chr18 74090195 ACAxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 414 4 0 135.322688 0.333333 0.02 3.357792 116 58 2811 1557 60 60 0 0 CC 51.955151 178 1 4387 13 KEEP - Mapk4 YES B[a]P_3 chr18 74929916 74929916 T G intronic Myo5b NA NA intronic Myo5b NA NA intronic ENSMUSG00000025885 NA NA 18qE2 NA NA chr18 74929916 TCCxTCC T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 220 0 0 35.343089 0.222222 0.02 0.623734 77 22 2096 476 60 60 0 0 TT 28.875605 96 0 2682 0 KEEP + Myo5b NO B[a]P_3 chr18 76305329 76305329 T C intronic Zbtb7c NA NA intronic Zbtb7c NA NA intronic ENSMUSG00000044646 NA NA 18qE3 NA NA chr18 76305329 GTGxTGC T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997162 0.997163 0.999999 117 0 0 33.504919 0.228571 0.02 1.073098 54 16 1398 422 60 60 0 0 TT 10.497905 35 0 917 0 KEEP + Zbtb7c NO B[a]P_3 chr18 77571447 77571447 C A exonic Loxhd1 nonsynonymous SNV NM_172834:c.C1027A:p.R343S exonic Loxhd1 nonsynonymous SNV uc008fri.1:c.C328A:p.R110S exonic ENSMUSG00000032818 nonsynonymous SNV ENSMUST00000148341:c.C70A:p.R24S 18qE3 NA NA chr18 77571447 GGCxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 100 2 0 43.461598 0.409091 0.02 -0.385631 26 18 650 478 60 60 0 0 CC 12.011639 40 0 1008 0 KEEP + Loxhd1 YES B[a]P_3 chr18 80339451 80339451 C A exonic Adnp2 synonymous SNV NM_175028:c.G45T:p.V15V exonic Adnp2 synonymous SNV uc008fsk.1:c.G45T:p.V15V exonic ENSMUSG00000053950 synonymous SNV ENSMUST00000066743:c.G45T:p.V15V 18qE3 NA NA chr18 80339451 CCGxACC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.963769 0.963774 0.999994 114 0 0 48.10433 0.392157 0.02 1.150184 31 20 856 534 60 60 0 0 CC 13.235896 44 0 1252 0 KEEP - Adnp2 YES B[a]P_3 chr18 84838331 84838331 A G exonic Cndp2 nonsynonymous SNV NM_023149:c.T1202C:p.L401P exonic Cndp2 nonsynonymous SNV uc008fut.1:c.T1202C:p.L401P exonic ENSMUSG00000024644 stoploss SNV ENSMUST00000097500:c.T1201C:p.X401R 18qE4 NA NA chr18 84838331 TTCxGGG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877585 0.877708 0.99986 68 0 0 30.126342 0.35 0.02 -0.350588 26 14 691 347 60 60 0 0 AA 5.413681 18 0 494 0 KEEP - Cndp2 NO B[a]P_3 chr18 89666295 89666295 C A exonic Dok6 synonymous SNV NM_001039173:c.G336T:p.L112L exonic Dok6 synonymous SNV uc008fvs.1:c.G12T:p.L4L exonic ENSMUSG00000073514 synonymous SNV ENSMUST00000097495:c.G336T:p.L112L 18qE4 NA NA chr18 89666295 CCCxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 88 0 0 48.819659 0.5 0.02 -0.333196 19 19 526 512 60 60 0 0 CC 12.020519 40 0 1118 0 KEEP - Dok6 YES B[a]P_3 chr19 10322692 10322692 C A exonic Dagla nonsynonymous SNV NM_198114:c.G2597T:p.G866V exonic Dagla nonsynonymous SNV uc008gpm.1:c.G2597T:p.G866V exonic ENSMUSG00000035735 nonsynonymous SNV ENSMUST00000039327:c.G2597T:p.G866V 19qA NA NA chr19 10322692 ACAxCCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73962 0.739671 0.999931 63 0 0 52.837154 0.625 0.02 -0.28055 12 20 326 525 60 60 0 0 CC 7.517994 25 0 673 0 KEEP - Dagla YES B[a]P_3 chr19 10668127 10668127 C A intronic Dak NA NA intronic Dak NA NA intronic "ENSMUSG00000034371,ENSMUSG00000034445" NA NA 19qA NA NA chr19 10668127 CATxAGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 106 0 0 90.991164 0.693878 0.02 -0.438319 15 34 409 879 60 60 0 0 CC 13.828895 46 0 1305 0 KEEP - Dak YES B[a]P_3 chr19 10787156 10787156 C T exonic Vps37c nonsynonymous SNV NM_181403:c.C491T:p.P164L exonic Vps37c nonsynonymous SNV uc008gqr.1:c.C167T:p.P56L exonic ENSMUSG00000048832 nonsynonymous SNV ENSMUST00000087951:c.C491T:p.P164L 19qA NA NA chr19 10787156 TGCxGGA C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58289 0.58293 0.999931 57 0 0 53.104436 0.730769 0.02 -0.227745 7 19 169 506 60 60 0 0 CC 7.212124 24 0 603 0 KEEP + Vps37c NO B[a]P_3 chr19 10801043 10801043 C A exonic Cd5 nonsynonymous SNV NM_007650:c.G144T:p.E48D exonic Cd5 nonsynonymous SNV uc008gqv.1:c.G144T:p.E48D exonic ENSMUSG00000024669 nonsynonymous SNV ENSMUST00000025571:c.G144T:p.E48D 19qA NA NA chr19 10801043 GATxTCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582854 0.58293 0.999869 53 2 0 14.463584 0.269231 0.02 -0.227954 19 7 533 177 60 60 0 0 CC 6.317503 21 0 603 0 KEEP - Cd5 YES B[a]P_3 chr19 11378377 11378377 G T intergenic "4930526L06Rik(dist=4003),Ms4a7(dist=17152)" NA NA intergenic "Ms4a5(dist=20074),Ms4a7(dist=17521)" NA NA intronic ENSMUSG00000024671 NA NA 19qA NA NA chr19 11378377 CTTxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 106 1 0 59.791479 0.45283 0.02 1.132629 29 24 805 642 60 60 0 0 GG 13.235693 44 0 1246 0 KEEP NA 4930526L06Rik YES B[a]P_3 chr19 13074266 13074266 C A exonic Olfr1451 nonsynonymous SNV NM_146705:c.C789A:p.S263R exonic Olfr1451 nonsynonymous SNV uc008gva.1:c.C789A:p.S263R exonic ENSMUSG00000046913 nonsynonymous SNV ENSMUST00000063144:c.C789A:p.S263R 19qA NA NA chr19 13074266 CAGxCAT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999999 91 0 0 23.105731 0.25 0.02 -0.385784 33 11 904 286 60 60 0 0 CC 10.527387 35 0 971 0 KEEP + Olfr1451 YES B[a]P_3 chr19 15981528 15981528 C A exonic Psat1 nonsynonymous SNV NM_001205339:c.G890T:p.R297M exonic Psat1 nonsynonymous SNV uc008gwn.1:c.G179T:p.R60M exonic ENSMUSG00000024640 nonsynonymous SNV ENSMUST00000025542:c.G899T:p.R300M 19qA NA NA chr19 15981528 ATCxTGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 182 0 0 122.128603 0.686567 0.02 1.010067 21 46 571 1183 60 60 0 0 CC 25.266507 84 0 2374 0 KEEP - Psat1 YES B[a]P_3 chr19 16947946 16947946 C A exonic Foxb2 nonsynonymous SNV NM_008023:c.G185T:p.R62L exonic Foxb2 nonsynonymous SNV uc008gxc.1:c.G185T:p.R62L exonic ENSMUSG00000056829 nonsynonymous SNV ENSMUST00000072915:c.G185T:p.R62L 19qB NA NA chr19 16947946 TGGxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 188 1 0 161.68041 0.8 0.02 0.983679 14 56 364 1502 60 60 0 0 CC 28.215973 94 0 2277 0 KEEP - Foxb2 YES B[a]P_3 chr19 19184990 19184990 C A intronic Rorb NA NA intronic Rorb NA NA intronic ENSMUSG00000036192 NA NA 19qB NA NA chr19 19184990 TCCxGGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996722 0.996724 0.999999 126 0 0 23.692447 0.173913 0.02 0.886468 57 12 1485 318 60 60 0 0 CC 10.476186 35 0 890 0 KEEP - Rorb YES B[a]P_3 chr19 20454919 20454919 A C intronic Anxa1 NA NA intronic Anxa1 NA NA intronic ENSMUSG00000024659 NA NA 19qB NA NA chr19 20454919 GACxAGA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760854 0.760887 0.999957 63 2 0 82.049626 0.84375 0.02 -0.289366 5 27 132 752 60 60 0 0 AA 7.820409 26 0 722 0 KEEP - Anxa1 NO B[a]P_3 chr19 23378340 23378340 G A exonic Mamdc2 nonsynonymous SNV NM_174857:c.C1958T:p.A653V exonic Mamdc2 nonsynonymous SNV uc012bjo.1:c.C854T:p.A285V exonic ENSMUSG00000033207 nonsynonymous SNV ENSMUST00000036069:c.C1958T:p.A653V 19qB NA NA chr19 23378340 ATGxCGA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999559 0.999559 1 197 0 0 88.409469 0.440476 0.02 0.86092 47 37 1281 958 60 60 0 0 GG 25.557534 85 0 2351 0 KEEP - Mamdc2 NO B[a]P_3 chr19 24420878 24420878 G T intronic Pip5k1b NA NA intronic Pip5k1b NA NA intronic ENSMUSG00000024867 NA NA 19qB NA NA chr19 24420878 GAGxAGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457697 0.457757 0.999869 49 0 0 49.139206 0.818182 0.02 -0.192841 4 18 113 451 60 60 0 0 GG 6.315549 21 0 588 0 KEEP - Pip5k1b YES B[a]P_3 chr19 25697616 25697616 G C exonic Dmrt3 nonsynonymous SNV NM_177360:c.G1334C:p.G445A exonic Dmrt3 nonsynonymous SNV uc008hbk.2:c.G1334C:p.G445A exonic ENSMUSG00000042372 nonsynonymous SNV ENSMUST00000048935:c.G1334C:p.G445A 19qC1 NA NA chr19 25697616 ACGxTTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 200 2 0 171.392643 0.697674 0.02 0.941307 26 60 714 1657 60 60 0 0 GG 24.059849 80 0 2181 0 KEEP + Dmrt3 NO B[a]P_3 chr19 27309326 27309326 G T exonic Vldlr nonsynonymous SNV NM_001161420:c.G249T:p.Q83H exonic Vldlr nonsynonymous SNV uc008hbt.2:c.G249T:p.Q83H exonic ENSMUSG00000024924 nonsynonymous SNV ENSMUST00000025866:c.G249T:p.Q83H 19qC1 NA NA chr19 27309326 CCAxTGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 134 2 0 121.537689 0.730159 0.02 0.947987 17 46 470 1156 60 60 0 0 GG 17.144908 57 0 1616 0 KEEP + Vldlr YES B[a]P_3 chr19 29879813 29879813 C T exonic 9930021J03Rik synonymous SNV NM_172836:c.G552A:p.K184K exonic 9930021J03Rik synonymous SNV uc008hdy.2:c.G552A:p.K184K UTR5 ENSMUSG00000079351 NA NA 19qC1 NA NA chr19 29879813 CAGxTTC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 121 0 0 76.621777 0.508197 0.02 0.956626 30 31 814 802 60 60 0 0 CC 15.039417 50 0 1402 0 KEEP - 9930021J03Rik NO B[a]P_3 chr19 34041396 34041396 C G exonic Lipf nonsynonymous SNV NM_026334:c.C514G:p.Q172E exonic Lipf nonsynonymous SNV uc008hfw.1:c.C514G:p.Q172E exonic ENSMUSG00000024768 nonsynonymous SNV ENSMUST00000025680:c.C514G:p.Q172E 19qC1 NA NA chr19 34041396 TCTxAGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999999 69 1 0 59.635299 0.769231 0.02 -0.228 6 20 167 562 60 60 0 0 CC 10.52927 35 0 1008 0 KEEP + Lipf NO B[a]P_3 chr19 34668370 34668370 T G exonic Gm14446 synonymous SNV NM_001101605:c.A1176C:p.S392S exonic Gm14446 synonymous SNV uc008hgp.2:c.A1056C:p.S352S exonic ENSMUSG00000079339 synonymous SNV ENSMUST00000112467:c.A1176C:p.S392S 19qC1 "Score=0.956032;Name=No.72672,chr19:34681336" NA chr19 34668370 TTCxGAT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 431 3 0 26.947162 0.093407 0.02 3.196501 165 17 4435 433 60 60 0 0 TT 59.551115 198 0 5449 0 KEEP - Gm14446 NO B[a]P_3 chr19 34668377 34668377 T G exonic Gm14446 nonsynonymous SNV NM_001101605:c.A1169C:p.K390T exonic Gm14446 nonsynonymous SNV uc008hgp.2:c.A1049C:p.K350T exonic ENSMUSG00000079339 nonsynonymous SNV ENSMUST00000112467:c.A1169C:p.K390T 19qC1 "Score=0.956032;Name=No.72672,chr19:34681336" NA chr19 34668377 TTCxTAT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 418 2 0 28.086713 0.092896 0.02 2.992837 166 17 4503 445 60 60 0 0 TT 55.947876 186 0 5219 0 KEEP - Gm14446 NO B[a]P_3 chr19 38014411 38014411 C G exonic Myof nonsynonymous SNV NM_001099634:c.G3179C:p.R1060P exonic "Myof,mKIAA1207" nonsynonymous SNV uc008hiu.1:c.G95C:p.R32P exonic ENSMUSG00000048612 nonsynonymous SNV ENSMUST00000041475:c.G3179C:p.R1060P 19qC2 NA NA chr19 38014411 CTGxGGC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 145 1 0 27.492072 0.2 0.02 1.028079 52 13 1283 354 60 60 0 0 CC 19.531125 65 0 1630 0 KEEP - Myof NO B[a]P_3 chr19 38882012 38882012 C A intronic Noc3l NA NA intronic Noc3l NA NA intronic ENSMUSG00000024999 NA NA 19qC3 NA NA chr19 38882012 AACxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 114 0 0 113.803656 0.732143 0.02 1.009029 15 41 411 1084 60 60 0 0 CC 14.124485 47 0 1292 0 KEEP - Noc3l YES B[a]P_3 chr19 3997846 3997846 C A exonic Tbx10 nonsynonymous SNV NM_001001320:c.C591A:p.H197Q exonic Tbx10 nonsynonymous SNV uc012bgb.1:c.C465A:p.H155Q exonic ENSMUSG00000037477 nonsynonymous SNV ENSMUST00000041871:c.C591A:p.H197Q 19qA NA NA chr19 3997846 CCAxGTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 161 0 0 114.327377 0.565789 0.02 0.922494 33 43 789 1164 60 60 0 0 CC 18.932439 63 0 1584 0 KEEP + Tbx10 YES B[a]P_3 chr19 43887721 43887721 C A exonic Abcc2 synonymous SNV NM_013806:c.C1936A:p.R646R exonic Abcc2 synonymous SNV uc008how.1:c.C1936A:p.R646R exonic ENSMUSG00000025194 synonymous SNV ENSMUST00000026208:c.C1936A:p.R646R 19qC3 NA NA chr19 43887721 GACxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 93 2 1 20.542656 0.28125 0.02 -0.280371 23 9 549 245 60 60 0 0 CC 13.171862 44 0 1085 0 KEEP + Abcc2 YES B[a]P_3 chr19 43906644 43906644 C A exonic Abcc2 nonsynonymous SNV NM_013806:c.C4091A:p.A1364D exonic Abcc2 nonsynonymous SNV uc008how.1:c.C4091A:p.A1364D exonic ENSMUSG00000025194 nonsynonymous SNV ENSMUST00000026208:c.C4091A:p.A1364D 19qC3 NA NA chr19 43906644 TTGxCTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 66 0 0 12.181422 0.24 0.02 -0.219197 19 6 523 153 60 60 0 0 CC 9.922564 33 0 899 0 KEEP + Abcc2 YES B[a]P_3 chr19 44586425 44586425 C G exonic Wnt8b synonymous SNV NM_011720:c.C960G:p.A320A exonic Wnt8b synonymous SNV uc008hpt.2:c.C960G:p.A320A exonic ENSMUSG00000036961 synonymous SNV ENSMUST00000041163:c.C960G:p.A320A 19qC3 NA NA chr19 44586425 CGCxGAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.548763 0.552887 0.99254 38 0 0 38.118475 0.64 0.02 -0.218979 9 16 224 376 60 60 0 0 CC 2.704958 9 0 231 0 KEEP + Wnt8b NO B[a]P_3 chr19 44593389 44593389 A C splicing Sec31b(NM_001033343:exon23:c.2961+2T>G) NA NA splicing "Sec31b(uc008hpu.1:exon23:c.2961+2T>G,uc012bmg.1:exon22:c.2490+2T>G)" NA NA splicing "ENSMUSG00000051984(ENSMUST00000063632:exon23:c.2961+2T>G,ENSMUST00000111985:exon22:c.2490+2T>G)" NA NA 19qC3 NA NA chr19 44593389 GCGxCCT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 273 2 0 193.701562 0.747253 0.02 0.897938 23 68 612 1837 60 60 0 0 AA 42.039903 140 0 3741 0 KEEP - Sec31b NO B[a]P_3 chr19 45082685 45082685 A T exonic Peo1 nonsynonymous SNV NM_153796:c.A1066T:p.I356F exonic Peo1 nonsynonymous SNV uc008hqi.1:c.A1066T:p.I356F exonic ENSMUSG00000025209 nonsynonymous SNV ENSMUST00000026227:c.A1066T:p.I356F 19qC3 NA NA chr19 45082685 CGTxTTC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 194 0 0 9.196893 0.06383 0.02 0.676174 88 6 2183 160 60 60 0 0 AA 24.342691 81 0 2108 0 KEEP + Peo1 NO B[a]P_3 chr19 45230548 45230548 G T exonic Tlx1 nonsynonymous SNV NM_021901:c.G944T:p.W315L exonic Tlx1 nonsynonymous SNV uc008hqu.1:c.G944T:p.W315L exonic ENSMUSG00000025215 nonsynonymous SNV ENSMUST00000026236:c.G944T:p.W315L 19qC3 NA NA chr19 45230548 CGTxGTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 216 2 0 151.210012 0.739726 0.02 0.95772 19 54 498 1436 60 60 0 0 GG 30.890428 103 0 2864 0 KEEP + Tlx1 YES B[a]P_3 chr19 46320668 46320668 G T exonic Gbf1 nonsynonymous SNV NM_178930:c.G253T:p.A85S exonic Gbf1 nonsynonymous SNV uc008hsm.1:c.G253T:p.A85S exonic ENSMUSG00000025224 nonsynonymous SNV ENSMUST00000026254:c.G253T:p.A85S 19qC3 NA NA chr19 46320668 CTGxCAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 125 0 0 25.694624 0.266667 0.02 -0.394529 33 12 896 313 60 60 0 0 GG 18.643915 62 0 1708 0 KEEP + Gbf1 YES B[a]P_3 chr19 4734890 4734890 C A exonic Sptbn2 nonsynonymous SNV NM_021287:c.C2659A:p.L887M exonic Spnb3 nonsynonymous SNV uc008gan.1:c.C2659A:p.L887M exonic ENSMUSG00000067889 nonsynonymous SNV ENSMUST00000008991:c.C2659A:p.L887M 19qA NA NA chr19 4734890 GACxTGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 87 0 0 47.11735 0.5 0.02 -0.333164 19 19 525 495 60 60 0 0 CC 9.325197 31 0 881 0 KEEP + Sptbn2 YES B[a]P_3 chr19 47865900 47865900 G T intronic Wdr96 NA NA intronic D19Ertd652e NA NA intronic ENSMUSG00000044948 NA NA 19qD1 NA NA chr19 47865900 CCTxCAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 102 0 0 31.849749 0.285714 0.02 -0.429663 35 14 972 379 60 60 0 0 GG 12.023484 40 0 1125 0 KEEP - Wdr96 YES B[a]P_3 chr19 4841111 4841111 C T exonic Ccdc87 nonsynonymous SNV NM_207268:c.C1630T:p.R544C exonic Ccdc87 nonsynonymous SNV uc008gbb.1:c.C1630T:p.R544C exonic ENSMUSG00000067872 nonsynonymous SNV ENSMUST00000088653:c.C1630T:p.R544C 19qA NA NA chr19 4841111 AACxGTA C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 92 0 0 49.35194 0.527778 0.02 -0.31552 17 19 422 511 60 60 0 0 CC 14.730862 49 0 1295 0 KEEP + Ccdc87 NO B[a]P_3 chr19 53888518 53888518 C A exonic Rbm20 synonymous SNV NM_001170847:c.C966A:p.P322P exonic Rbm20 synonymous SNV uc008hwz.2:c.C966A:p.P322P exonic ENSMUSG00000043639 synonymous SNV ENSMUST00000050565:c.C846A:p.P282P 19qD2 NA NA chr19 53888518 GCCxCCT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 211 2 0 167.336578 0.590909 0.02 2.134318 45 65 1186 1686 60 60 0 0 CC 23.159849 77 0 2132 0 KEEP + Rbm20 YES B[a]P_3 chr19 54104073 54104073 A G exonic Shoc2 nonsynonymous SNV NM_001168505:c.A1399G:p.I467V exonic Shoc2 nonsynonymous SNV uc008hxh.1:c.A1399G:p.I467V exonic ENSMUSG00000024976 nonsynonymous SNV ENSMUST00000025932:c.A1399G:p.I467V 19qD2 NA NA chr19 54104073 GAGxTCG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851444 0.851984 0.999366 64 0 0 33.719535 0.368421 0.02 -0.33312 24 14 613 379 60 60 0 0 AA 5.112774 17 0 463 0 KEEP + Shoc2 NO B[a]P_3 chr19 5464355 5464355 G A exonic Fibp nonsynonymous SNV NM_001253832:c.G949A:p.D317N exonic Fibp nonsynonymous SNV uc008gdg.1:c.G928A:p.D310N exonic ENSMUSG00000024911 nonsynonymous SNV ENSMUST00000025847:c.G949A:p.D317N 19qA NA NA chr19 5464355 TCTxACC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 230 0 0 50.383253 0.282353 0.02 0.852165 61 24 1691 609 60 60 0 0 GG 31.888757 106 0 3057 0 KEEP + Fibp NO B[a]P_3 chr19 55163352 55163352 C A exonic Gpam nonsynonymous SNV NM_008149:c.G496T:p.V166L exonic Gpam nonsynonymous SNV uc008hxk.1:c.G496T:p.V166L exonic ENSMUSG00000024978 nonsynonymous SNV ENSMUST00000061856:c.G496T:p.V166L 19qD2 NA NA chr19 55163352 TCAxCTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 188 0 0 84.470356 0.349057 0.02 2.061898 69 37 1869 966 60 60 0 0 CC 14.824405 52 1 1426 7 KEEP - Gpam YES B[a]P_3 chr19 55368756 55368756 G T exonic Acsl5 nonsynonymous SNV NM_027976:c.G1802T:p.G601V exonic Acsl5 nonsynonymous SNV uc008hxp.1:c.G1802T:p.G601V exonic ENSMUSG00000024981 nonsynonymous SNV ENSMUST00000163443:c.G557T:p.G186V 19qD2 NA NA chr19 55368756 TCGxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 219 0 0 125.910782 0.495146 0.02 2.088341 52 51 1426 1326 60 60 0 0 GG 26.468553 88 0 2447 0 KEEP + Acsl5 YES B[a]P_3 chr19 56114485 56114485 G C intergenic "Tcf7l2(dist=106340),Habp2(dist=247943)" NA NA ncRNA_exonic AK052788 NA NA intergenic "ENSMUSG00000024985(dist=106341),ENSMUSG00000077223(dist=237523)" NA NA 19qD2 NA NA chr19 56114485 TGGxAGC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 74 0 0 38.878969 0.454545 0.02 -0.289378 18 15 503 416 60 60 0 0 GG 9.321033 31 0 870 0 KEEP NA Tcf7l2 NO B[a]P_3 chr19 56419231 56419231 G T exonic Nrap nonsynonymous SNV NM_198059:c.C2992A:p.L998I exonic Nrap nonsynonymous SNV uc012bnq.1:c.C2062A:p.L688I exonic "ENSMUSG00000049134,ENSMUSG00000092491" nonsynonymous SNV ENSMUST00000095947:c.C2746A:p.L916I 19qD2 NA NA chr19 56419231 GAAxCCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 166 0 0 65.850593 0.373333 0.02 0.842995 47 28 1258 740 60 60 0 0 GG 20.732271 69 0 1885 0 KEEP - Nrap YES B[a]P_3 chr19 56545473 56545473 C A exonic Plekhs1 nonsynonymous SNV NM_001164263:c.C164A:p.T55K exonic 9930023K05Rik nonsynonymous SNV uc008hyy.2:c.C164A:p.T55K exonic ENSMUSG00000035818 nonsynonymous SNV ENSMUST00000039666:c.C164A:p.T55K 19qD2 NA NA chr19 56545473 GAAxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 171 0 0 91.848453 0.48 0.02 1.029613 39 36 927 972 60 60 0 0 CC 19.830311 66 0 1645 0 KEEP + Plekhs1 YES B[a]P_3 chr19 56545477 56545477 T G exonic Plekhs1 synonymous SNV NM_001164263:c.T168G:p.G56G exonic 9930023K05Rik synonymous SNV uc008hyy.2:c.T168G:p.G56G exonic ENSMUSG00000035818 synonymous SNV ENSMUST00000039666:c.T168G:p.G56G 19qD2 NA NA chr19 56545477 GGGxCTC T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 172 0 0 100.153457 0.5 0.02 1.020264 38 38 973 1049 60 60 0 0 TT 19.144783 66 1 1782 6 KEEP + Plekhs1 NO B[a]P_3 chr19 56555510 56555510 G T intronic Plekhs1 NA NA intronic 9930023K05Rik NA NA intronic ENSMUSG00000035818 NA NA 19qD2 NA NA chr19 56555510 TCTxTCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 83 1 0 43.059385 0.447368 0.02 -0.341975 21 17 585 463 60 60 0 0 GG 11.73044 39 0 1089 0 KEEP + Plekhs1 YES B[a]P_3 chr19 5697607 5697607 T A exonic Map3k11 nonsynonymous SNV NM_022012:c.T1792A:p.S598T exonic Map3k11 nonsynonymous SNV uc008get.1:c.T1792A:p.S598T exonic ENSMUSG00000004054 nonsynonymous SNV ENSMUST00000004156:c.T1792A:p.S598T 19qA NA NA chr19 5697607 GACxCGT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 117 1 0 27.497527 0.265306 0.02 -0.429391 36 13 953 336 60 60 0 0 TT 12.861236 52 1 1419 26 KEEP + Map3k11 NO B[a]P_3 chr19 5869431 5869431 C G intronic Frmd8 NA NA intronic Frmd8 NA NA intronic ENSMUSG00000024816 NA NA 19qA NA NA chr19 5869431 TGTxCTT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693584 0.693668 0.999879 55 0 0 10.518862 0.166667 0.02 -0.263069 25 5 694 140 60 60 0 0 CC 6.618074 22 0 627 0 KEEP - Frmd8 NO B[a]P_3 chr19 6058295 6058295 G C exonic Fau synonymous SNV NM_001190436:c.G45C:p.V15V exonic Fau synonymous SNV uc008ggu.2:c.G45C:p.V15V exonic ENSMUSG00000038274 synonymous SNV ENSMUST00000043074:c.G45C:p.V15V 19qA NA NA chr19 6058295 GGTxACC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 191 4 1 8.650474 0.067568 0.02 1.046325 69 5 1925 142 60 60 0 0 GG 23.762715 79 0 2227 0 KEEP + Fau NO B[a]P_3 chr19 61302544 61302544 C G exonic Csf2ra synonymous SNV NM_009970:c.G384C:p.S128S exonic Csf2ra synonymous SNV uc008icj.2:c.G384C:p.S128S exonic ENSMUSG00000059326 synonymous SNV ENSMUST00000076046:c.G384C:p.S128S 19qD3 NA NA chr19 61302544 CCCxGAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.775649 0.78106 0.993072 58 0 0 24.863621 0.382353 0.02 -0.297474 21 13 488 285 60 60 0 0 CC 3.302589 11 0 264 0 KEEP - Csf2ra NO B[a]P_3 chr19 6171547 6171547 C A exonic Batf2 nonsynonymous SNV NM_028967:c.C386A:p.P129Q exonic Batf2 nonsynonymous SNV uc008ghp.1:c.C383A:p.P128Q exonic ENSMUSG00000039699 nonsynonymous SNV ENSMUST00000045042:c.C386A:p.P129Q 19qA NA NA chr19 6171547 CTCxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 377 0 0 90.469681 0.257669 0.02 3.354982 121 42 3044 1108 60 60 0 0 CC 51.700013 172 0 4489 0 KEEP + Batf2 YES B[a]P_3 chr19 6390393 6390393 C G exonic Pygm nonsynonymous SNV NM_011224:c.C1466G:p.P489R exonic Pygm nonsynonymous SNV uc008gio.1:c.C1466G:p.P489R exonic ENSMUSG00000032648 nonsynonymous SNV ENSMUST00000113483:c.C1202G:p.P401R 19qA NA NA chr19 6390393 CTCxTCG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 142 0 0 36.408603 0.25 0.02 1.063951 54 18 1516 454 60 60 0 0 CC 16.533719 55 0 1526 0 KEEP + Pygm NO B[a]P_3 chr19 6517049 6517049 C G exonic Nrxn2 nonsynonymous SNV NM_001205235:c.C3929G:p.A1310G exonic Nrxn2 nonsynonymous SNV uc008giy.1:c.C734G:p.A245G exonic ENSMUSG00000033768 nonsynonymous SNV ENSMUST00000113459:c.C734G:p.A245G 19qA NA NA chr19 6517049 CCGxCGA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760854 0.760887 0.999957 65 0 0 72.880779 0.757576 0.02 -0.289357 8 25 217 689 60 60 0 0 CC 7.820255 26 0 719 0 KEEP + Nrxn2 NO B[a]P_3 chr19 7013497 7013497 C A intronic Gpr137 NA NA intronic Gpr137 NA NA intronic ENSMUSG00000024958 NA NA 19qA NA NA chr19 7013497 GTCxCTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 44 0 0 34.600396 0.636364 0.02 -0.201517 8 14 217 342 60 60 0 0 CC 6.315263 21 0 574 0 KEEP - Gpr137 YES B[a]P_3 chr1 106871552 106871552 T A intronic Cdh20 NA NA intronic Cdh20 NA NA intronic ENSMUSG00000050840 NA NA 1qE2.1 NA NA chr1 106871552 TTGxTCC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 130 0 0 37.009643 0.380952 0.02 -0.368205 26 16 688 415 60 60 0 0 TT 18.947855 63 0 1722 0 KEEP + Cdh20 NO B[a]P_3 chr1 108897084 108897084 C A exonic Serpinb13 nonsynonymous SNV NM_172852:c.C856A:p.R286S exonic Serpinb13 nonsynonymous SNV uc007chf.1:c.C856A:p.R286S exonic ENSMUSG00000048775 nonsynonymous SNV ENSMUST00000165342:c.C223A:p.R75S 1qE2.1 NA NA chr1 108897084 CCCxGCT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.693663 0.693668 0.999992 83 0 0 27.751836 0.4 0.02 -0.262884 18 12 463 308 60 60 0 0 CC 12.312636 41 0 1044 0 KEEP + Serpinb13 YES B[a]P_3 chr1 108976402 108976402 C T intronic Serpinb3d NA NA intronic Serpinb3d NA NA intronic ENSMUSG00000058017 NA NA 1qE2.1 "Score=0.911469;Name=No.363,chr1:109186334" NA chr1 108976402 CATxAGT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 88 0 0 32.803212 0.451613 0.02 -0.271783 17 14 475 354 60 60 0 0 CC 13.402686 48 1 1394 9 KEEP - Serpinb3d NO B[a]P_3 chr1 120733295 120733295 G T exonic Gli2 nonsynonymous SNV NM_001081125:c.C3702A:p.H1234Q exonic Gli2 nonsynonymous SNV uc007cim.1:c.C3702A:p.H1234Q exonic ENSMUSG00000048402 nonsynonymous SNV ENSMUST00000062483:c.C3702A:p.H1234Q 1qE2.3 NA NA chr1 120733295 GGGxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 90 1 0 33.105069 0.424242 0.02 -0.289307 19 14 518 362 60 60 0 0 GG 14.430573 48 0 1297 0 KEEP - Gli2 YES B[a]P_3 chr1 123424681 123424681 C A exonic Htr5b nonsynonymous SNV NM_010483:c.G86T:p.G29V exonic Htr5b nonsynonymous SNV uc011wqx.1:c.G86T:p.G29V exonic ENSMUSG00000050534 nonsynonymous SNV ENSMUST00000055884:c.G86T:p.G29V 1qE2.3 NA NA chr1 123424681 CTGxCGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 75 0 0 40.698067 0.592593 0.02 -0.236699 11 16 301 410 60 60 0 0 CC 12.290367 41 0 1092 0 KEEP - Htr5b YES B[a]P_3 chr1 125273252 125273252 C A splicing Dpp10(NM_199021:exon18:c.1496-1G>T) NA NA splicing Dpp10(uc007cjx.2:exon18:c.1496-1G>T) NA NA splicing "ENSMUSG00000036815(ENSMUST00000035420:exon18:c.1487-1G>T,ENSMUST00000112603:exon18:c.1334-1G>T,ENSMUST00000112606:exon18:c.1496-1G>T)" NA NA 1qE2.3 NA NA chr1 125273252 GACxTAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 95 0 0 25.198021 0.392857 0.02 -0.245457 17 11 464 281 60 60 0 0 CC 15.63343 52 0 1471 0 KEEP - Dpp10 YES B[a]P_3 chr1 127769355 127769355 G T exonic Gpr39 nonsynonymous SNV NM_027677:c.G1265T:p.G422V exonic Gpr39 nonsynonymous SNV uc007ckh.2:c.G1265T:p.G422V exonic ENSMUSG00000026343 nonsynonymous SNV ENSMUST00000027581:c.G1265T:p.G422V 1qE3 NA NA chr1 127769355 CTGxAGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999998 53 0 0 16.134895 0.411765 0.02 -0.149049 10 7 280 178 60 60 0 0 GG 9.926892 33 0 935 0 KEEP + Gpr39 YES B[a]P_3 chr1 12934149 12934149 A C exonic Slco5a1 nonsynonymous SNV NM_172841:c.T961G:p.L321V exonic Slco5a1 nonsynonymous SNV uc007aif.1:c.T961G:p.L321V exonic ENSMUSG00000025938 nonsynonymous SNV ENSMUST00000115401:c.T961G:p.L321V 1qA3 NA NA chr1 12934149 GTAxGTA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 270 0 0 64.293739 0.293578 0.02 2.036444 77 32 2089 777 70 70 0 0 AA 35.795192 119 0 3336 0 KEEP - Slco5a1 NO B[a]P_3 chr1 129719746 129719746 C A exonic Map3k19 nonsynonymous SNV NM_011737:c.G1832T:p.G611V exonic Ysk4 nonsynonymous SNV uc011wra.1:c.G1832T:p.G611V exonic ENSMUSG00000051590 nonsynonymous SNV ENSMUST00000061512:c.G1832T:p.G611V 1qE3 NA NA chr1 129719746 TTAxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641278 0.641347 0.999892 55 0 0 28.616916 0.428571 0.02 -0.245485 16 12 436 312 60 60 0 0 CC 6.917394 23 0 629 0 KEEP - Map3k19 YES B[a]P_3 chr1 129873117 129873117 T C exonic Zranb3 nonsynonymous SNV NM_027678:c.A1541G:p.E514G exonic Zranb3 nonsynonymous SNV uc007cld.1:c.A1541G:p.E514G exonic ENSMUSG00000036086 nonsynonymous SNV ENSMUST00000037426:c.A1541G:p.E514G 1qE4 NA NA chr1 129873117 TTTxCAA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162444 0.162467 0.99986 35 0 0 18.641271 0.538462 0.02 -0.113985 6 7 161 192 60 60 0 0 TT 5.693708 19 0 503 0 KEEP - Zranb3 NO B[a]P_3 chr1 130196570 130196570 G T exonic Lct synonymous SNV NM_001081078:c.C3762A:p.P1254P exonic Lct synonymous SNV uc007clm.1:c.C3762A:p.P1254P exonic ENSMUSG00000026354 synonymous SNV ENSMUST00000073490:c.C3762A:p.P1254P 1qE4 NA NA chr1 130196570 CCAxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 74 0 0 23.98323 0.454545 0.02 -0.19289 12 10 338 258 60 60 0 0 GG 12.632025 42 0 1179 0 KEEP - Lct YES B[a]P_3 chr1 132916589 132916589 C A exonic Il10 nonsynonymous SNV NM_010548:c.C101A:p.P34Q exonic Il10 nonsynonymous SNV uc007cmu.2:c.C101A:p.P34Q exonic ENSMUSG00000016529 nonsynonymous SNV ENSMUST00000016673:c.C101A:p.P34Q 1qE4 NA NA chr1 132916589 TCCxAGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 114 1 0 29.767006 0.444444 0.02 -0.236736 15 12 413 321 60 60 0 0 CC 19.551755 65 0 1830 0 KEEP + Il10 YES B[a]P_3 chr1 133025550 133025550 C T exonic Dyrk3 nonsynonymous SNV NM_145508:c.G1462A:p.G488S exonic Dyrk3 nonsynonymous SNV uc007cmw.1:c.G1462A:p.G488S exonic ENSMUSG00000016526 nonsynonymous SNV ENSMUST00000016670:c.G1462A:p.G488S 1qE4 NA NA chr1 133025550 AGCxCTT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 115 1 0 38.344007 0.483871 0.02 -0.27145 16 15 400 405 60 60 0 0 CC 20.153127 67 0 1872 0 KEEP - Dyrk3 NO B[a]P_3 chr1 133649820 133649820 C A intronic Slc26a9 NA NA intronic Slc26a9 NA NA intronic ENSMUSG00000042268 NA NA 1qE4 NA NA chr1 133649820 CTCxCCT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 109 0 0 47.083219 0.5 0.02 -0.350611 20 20 550 496 60 60 0 0 CC 17.14342 57 0 1583 0 KEEP + Slc26a9 YES B[a]P_3 chr1 135184098 135184098 C A exonic Plekha6 nonsynonymous SNV NM_001160268:c.C2284A:p.L762M exonic Plekha6 nonsynonymous SNV uc007cpx.2:c.C1369A:p.L457M exonic ENSMUSG00000041757 nonsynonymous SNV ENSMUST00000086505:c.C2392A:p.L798M 1qE4 NA NA chr1 135184098 CCCxTGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 110 0 0 39.568151 0.53125 0.02 -0.280285 15 17 421 411 60 60 0 0 CC 19.540745 65 0 1827 0 KEEP + Plekha6 YES B[a]P_3 chr1 136081835 136081835 C A exonic Chi3l1 nonsynonymous SNV NM_007695:c.C451A:p.P151T exonic Chi3l1 nonsynonymous SNV uc007crg.2:c.C451A:p.P151T exonic ENSMUSG00000064246 nonsynonymous SNV ENSMUST00000082060:c.C451A:p.P151T 1qE4 NA NA chr1 136081835 TACxCTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.717315 0.717315 1 102 0 0 24.482452 0.366667 0.02 -0.271776 19 11 522 278 60 60 0 0 CC 17.985616 60 0 1657 0 KEEP + Chi3l1 YES B[a]P_3 chr1 136246774 136246774 C G exonic Tmem183a synonymous SNV NM_001042485:c.G825C:p.P275P exonic Tmem183a synonymous SNV uc007crq.1:c.G828C:p.P276P exonic ENSMUSG00000042305 synonymous SNV ENSMUST00000049470:c.G828C:p.P276P 1qE4 NA NA chr1 136246774 GGGxGGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 59 0 0 26.564879 0.526316 0.02 -0.166517 9 10 217 275 60 60 0 0 CC 9.592243 32 0 760 0 KEEP - Tmem183a NO B[a]P_3 chr1 137021055 137021055 G C exonic Ptprv unknown UNKNOWN exonic Ptprv nonsynonymous SNV uc007csr.2:c.C982G:p.Q328E intergenic "ENSMUSG00000066885(dist=12172),ENSMUSG00000031506(dist=8247)" NA NA 1qE4 NA NA chr1 137021055 CCTxCCC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 91 0 0 44.325654 0.571429 0.02 -0.245532 12 16 331 450 60 60 0 0 GG 15.028025 50 0 1381 0 KEEP - Ptprv NO B[a]P_3 chr1 137298925 137298925 C A exonic Ipo9 nonsynonymous SNV NM_153774:c.G1353T:p.M451I exonic Ipo9 nonsynonymous SNV uc007cte.1:c.G1353T:p.M451I exonic ENSMUSG00000041879 nonsynonymous SNV ENSMUST00000041023:c.G1353T:p.M451I 1qE4 NA NA chr1 137298925 AAGxATG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 58 0 0 18.14007 0.538462 0.02 -0.113987 6 7 168 187 60 60 0 0 CC 11.430832 38 0 1077 0 KEEP - Ipo9 YES B[a]P_3 chr1 137930723 137930723 G T exonic Tmem9 nonsynonymous SNV NM_001160145:c.G478T:p.A160S exonic Tmem9 nonsynonymous SNV uc011wsx.1:c.G98T:p.R33L exonic ENSMUSG00000026411 nonsynonymous SNV ENSMUST00000063719:c.G478T:p.A160S 1qE4 NA NA chr1 137930723 GGCxCTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 60 0 0 29.481845 0.413793 0.02 -0.254262 17 12 458 323 60 60 0 0 GG 7.492501 25 0 629 0 KEEP + Tmem9 YES B[a]P_3 chr1 137967551 137967551 C T exonic Cacna1s synonymous SNV NM_001081023:c.C606T:p.L202L exonic Cacna1s synonymous SNV uc007cuf.1:c.C606T:p.L202L exonic ENSMUSG00000026407 synonymous SNV ENSMUST00000057096:c.C606T:p.L202L 1qE4 NA NA chr1 137967551 GCTxGTC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 113 1 0 58.25544 0.594595 0.02 -0.32416 15 22 349 586 60 60 0 0 CC 18.922472 63 0 1523 0 KEEP + Cacna1s NO B[a]P_3 chr1 139980226 139980226 C A exonic Ptprc stopgain SNV NM_001268286:c.G1669T:p.E557X exonic Ptprc stopgain SNV uc007cvf.2:c.G1543T:p.E515X exonic ENSMUSG00000026395 stopgain SNV ENSMUST00000081416:c.G1669T:p.E557X 1qE4 NA NA chr1 139980226 TCTxATC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 350 0 0 74.389738 0.46875 0.02 1.036179 34 30 959 793 60 60 0 0 CC 73.061995 243 0 6943 0 KEEP - Ptprc YES B[a]P_3 chr1 140998657 140998657 T A exonic Dennd1b nonsynonymous SNV NM_181347:c.T749A:p.L250Q exonic Dennd1b nonsynonymous SNV uc007cvz.2:c.T749A:p.L250Q exonic ENSMUSG00000056268 nonsynonymous SNV ENSMUST00000094505:c.T749A:p.L250Q 1qF NA NA chr1 140998657 CTCxGAG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 75 0 0 22.415089 0.45 0.02 -0.175344 11 9 294 241 60 60 0 0 TT 12.621705 42 0 1139 0 KEEP + Dennd1b NO B[a]P_3 chr1 14883375 14883375 A C exonic Trpa1 nonsynonymous SNV NM_177781:c.T1703G:p.L568R exonic Trpa1 nonsynonymous SNV uc007ajc.1:c.T1703G:p.L568R exonic ENSMUSG00000032769 nonsynonymous SNV ENSMUST00000041447:c.T1703G:p.L568R 1qA3 NA NA chr1 14883375 AAAxGCA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196294 0.196312 0.999909 40 0 0 8.816333 0.357143 0.02 -0.122654 9 5 248 104 60 60 0 0 AA 7.219142 24 0 672 0 KEEP - Trpa1 NO B[a]P_3 chr1 152274089 152274089 G T exonic Tpr stopgain SNV NM_133780:c.G4207T:p.E1403X exonic Tpr stopgain SNV uc007cyb.2:c.G4207T:p.E1403X exonic ENSMUSG00000006005 stopgain SNV ENSMUST00000119161:c.G3985T:p.E1329X 1qG1 NA NA chr1 152274089 CTGxAAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 93 0 0 17.461294 0.347826 0.02 -0.201651 15 8 416 201 60 60 0 0 GG 16.541699 55 0 1550 0 KEEP + Tpr YES B[a]P_3 chr1 154336974 154336974 C A exonic Colgalt2 nonsynonymous SNV NM_177756:c.C894A:p.H298Q exonic Glt25d2 nonsynonymous SNV uc007czg.2:c.C894A:p.H298Q exonic ENSMUSG00000032649 nonsynonymous SNV ENSMUST00000044311:c.C894A:p.H298Q 1qG3 NA NA chr1 154336974 CCAxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 70 0 0 15.648971 0.291667 0.02 -0.21042 17 7 455 186 60 60 0 0 CC 11.128224 37 0 1021 0 KEEP + Colgalt2 YES B[a]P_3 chr1 156254876 156254876 G T exonic Cacna1e nonsynonymous SNV NM_009782:c.C5873A:p.A1958E exonic Cacna1e nonsynonymous SNV uc007dav.1:c.C5873A:p.A1958E exonic ENSMUSG00000004110 nonsynonymous SNV ENSMUST00000004214:c.C5873A:p.A1958E 1qG3 NA NA chr1 156254876 TCCxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 104 2 0 29.742819 0.387097 0.02 -0.271685 19 12 465 330 60 60 0 0 GG 15.897191 53 0 1299 0 KEEP - Cacna1e YES B[a]P_3 chr1 157710426 157710426 C A exonic Cep350 nonsynonymous SNV NM_001039184:c.G6800T:p.C2267F exonic Cep350 nonsynonymous SNV uc007dbs.2:c.G6800T:p.C2267F exonic ENSMUSG00000033671 nonsynonymous SNV ENSMUST00000138762:c.G6800T:p.C2267F 1qG3 NA NA chr1 157710426 TTAxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 155 0 0 82.495849 0.492308 0.02 1.027428 33 32 896 868 60 60 0 0 CC 21.644236 72 0 1988 0 KEEP - Cep350 YES B[a]P_3 chr1 158231855 158231855 C G exonic Tdrd5 nonsynonymous SNV NM_001134741:c.G414C:p.L138F exonic Tdrd5 nonsynonymous SNV uc011wud.1:c.G414C:p.L138F ncRNA_exonic ENSMUSG00000060985 NA NA 1qG3 NA NA chr1 158231855 TGCxAAA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522139 0.522161 0.999957 59 0 0 26.985756 0.5 0.02 -0.210331 12 12 334 285 60 60 0 0 CC 7.821489 26 0 744 0 KEEP - Tdrd5 NO B[a]P_3 chr1 158774892 158774892 C A exonic Angptl1 nonsynonymous SNV NM_028333:c.C156A:p.F52L exonic Angptl1 nonsynonymous SNV uc007ddc.1:c.C156A:p.F52L exonic ENSMUSG00000033544 nonsynonymous SNV ENSMUST00000027885:c.C156A:p.F52L 1qH1 NA NA chr1 158774892 ATTxTTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 40 0 0 7.664045 0.210526 0.02 -0.166598 15 4 422 100 60 60 0 0 CC 5.415199 18 0 521 0 KEEP + Angptl1 YES B[a]P_3 chr1 168333602 168333602 C A intronic Pogk NA NA intronic Pogk NA NA exonic ENSMUSG00000040596 nonsynonymous SNV ENSMUST00000127596:c.G286T:p.G96W 1qH2.3 NA NA chr1 168333602 TCCxAGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162465 0.162467 0.999988 47 0 0 17.73954 0.538462 0.02 -0.113973 6 7 163 183 60 60 0 0 CC 8.121866 27 0 762 0 KEEP - Pogk YES B[a]P_3 chr1 17151233 17151233 T A exonic Gdap1 stopgain SNV NM_010267:c.T720A:p.C240X exonic Gdap1 stopgain SNV uc007akc.2:c.T720A:p.C240X exonic ENSMUSG00000025777 stopgain SNV ENSMUST00000026879:c.T720A:p.C240X 1qA3 NA NA chr1 17151233 CTGxGGA T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 87 0 0 69.451039 0.774194 0.02 -0.271796 7 24 179 652 60 60 0 0 TT 13.533092 45 0 1214 0 KEEP + Gdap1 NO B[a]P_3 chr1 172955981 172955981 C A intronic Fcgr4 NA NA intronic Fcgr4 NA NA intronic ENSMUSG00000059089 NA NA 1qH3 NA NA chr1 172955981 CGTxATC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196309 0.196312 0.999988 44 1 0 8.623232 0.307692 0.02 -0.122759 9 4 256 102 60 60 0 0 CC 8.121907 27 0 769 0 KEEP + Fcgr4 YES B[a]P_3 chr1 173334002 173334002 A T exonic Arhgap30 nonsynonymous SNV NM_001005508:c.A755T:p.Y252F exonic Arhgap30 nonsynonymous SNV uc007doh.2:c.A755T:p.Y252F exonic ENSMUSG00000048865 nonsynonymous SNV ENSMUST00000056449:c.A755T:p.Y252F 1qH3 NA NA chr1 173334002 CCTxCCA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 58 2 0 35.4769 0.722222 0.02 -0.166554 5 13 126 339 70 60 0 0 AA 10.223524 34 0 900 0 KEEP + Arhgap30 NO B[a]P_3 chr1 173334003 173334003 C A exonic Arhgap30 stopgain SNV NM_001005508:c.C756A:p.Y252X exonic Arhgap30 stopgain SNV uc007doh.2:c.C756A:p.Y252X exonic ENSMUSG00000048865 stopgain SNV ENSMUST00000056449:c.C756A:p.Y252X 1qH3 NA NA chr1 173334003 CTAxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999998 59 2 0 33.444248 0.684211 0.02 -0.175312 6 13 165 324 70 60 0 0 CC 10.225941 34 0 934 0 KEEP + Arhgap30 YES B[a]P_3 chr1 174532562 174532562 A T exonic Fcrl6 stopgain SNV NM_001164725:c.T30A:p.C10X exonic Fcrl6 stopgain SNV uc011wwo.1:c.T30A:p.C10X exonic ENSMUSG00000070504 stopgain SNV ENSMUST00000094303:c.T30A:p.C10X 1qH3 NA NA chr1 174532562 ACCxCAG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 100 0 0 50.080787 0.542857 0.02 -0.30685 16 19 413 515 60 60 0 0 AA 15.31966 51 0 1347 0 KEEP - Fcrl6 NO B[a]P_3 chr1 175134268 175134268 C A exonic Olfr218 stopgain SNV NM_001001809:c.C780A:p.Y260X exonic Olfr218 stopgain SNV uc007drc.1:c.C780A:p.Y260X exonic ENSMUSG00000046643 stopgain SNV ENSMUST00000057548:c.C780A:p.Y260X 1qH3 NA NA chr1 175134268 CTAxCTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 221 0 0 63.437669 0.509804 0.02 1.052958 25 26 677 664 60 60 0 0 CC 40.565142 135 0 3688 0 KEEP + Olfr218 YES B[a]P_3 chr1 178770497 178770497 G A exonic Sdccag8 nonsynonymous SNV NM_029756:c.G628A:p.D210N exonic Sdccag8 nonsynonymous SNV uc007dui.1:c.G514A:p.D172N exonic ENSMUSG00000026504 nonsynonymous SNV ENSMUST00000056773:c.G514A:p.D172N 1qH4 NA NA chr1 178770497 GGTxATG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.99986 35 0 0 6.545694 0.333333 0.02 -0.078792 6 3 154 76 60 60 0 0 GG 5.715521 19 0 541 0 KEEP + Sdccag8 NO B[a]P_3 chr1 179707034 179707034 C G intronic Adss NA NA intronic Adss NA NA intronic ENSMUSG00000015961 NA NA 1qH4 NA NA chr1 179707034 CCAxAGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099717 0.099721 0.999957 41 0 0 7.178644 0.3 0.02 -0.087692 7 3 196 84 60 60 0 0 CC 7.821225 26 0 741 0 KEEP - Adss NO B[a]P_3 chr1 190377101 190377101 G A exonic Ush2a nonsynonymous SNV NM_021408:c.G5954A:p.S1985N exonic Ush2a nonsynonymous SNV uc007eaf.1:c.G5954A:p.S1985N exonic ENSMUSG00000026609 nonsynonymous SNV ENSMUST00000027905:c.G5954A:p.S1985N 1qH6 NA NA chr1 190377101 ACAxTGA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 40 0 0 12.372917 0.5 0.02 -0.087674 5 5 137 130 60 60 0 0 GG 7.216944 24 0 649 0 KEEP + Ush2a NO B[a]P_3 chr1 192882753 192882753 G A exonic Tatdn3 nonsynonymous SNV NM_001163421:c.C202T:p.P68S exonic Tatdn3 nonsynonymous SNV uc007eby.2:c.C202T:p.P68S exonic ENSMUSG00000026632 nonsynonymous SNV ENSMUST00000027945:c.C202T:p.P68S 1qH6 NA NA chr1 192882753 CTGxGTG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999998 61 0 0 27.065981 0.588235 0.02 -0.149058 7 10 189 273 60 60 0 0 GG 9.926461 33 0 927 0 KEEP - Tatdn3 NO B[a]P_3 chr1 194337791 194337791 C A exonic Hhat nonsynonymous SNV NM_144881:c.G1475T:p.W492L exonic Hhat nonsynonymous SNV uc007edp.2:c.G1475T:p.W492L exonic ENSMUSG00000037375 nonsynonymous SNV ENSMUST00000044190:c.G1475T:p.W492L 1qH6 NA NA chr1 194337791 GCCxAAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099708 0.099721 0.999869 37 0 0 12.67323 0.5 0.02 -0.087684 5 5 141 133 60 60 0 0 CC 6.317297 21 0 600 0 KEEP - Hhat YES B[a]P_3 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 43 0 0 11.82273 0.384615 0.02 -0.113988 8 5 224 132 60 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik YES B[a]P_3 chr1 195068325 195068325 G C intronic Hsd11b1 NA NA ncRNA_intronic AK005414 NA NA ncRNA_intronic ENSMUSG00000089688 NA NA 1qH6 NA NA chr1 195068325 TCTxTGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036594 0.036766 0.995343 21 0 0 8.024448 0.5 0.02 -0.052616 3 3 85 84 60 60 0 0 GG 4.211253 14 0 396 0 KEEP - Hsd11b1 NO B[a]P_3 chr1 196944017 196944017 C A exonic Cr1l nonsynonymous SNV NM_013499:c.G542T:p.R181I exonic "Cr1l,Crry" nonsynonymous SNV uc007eeu.1:c.G428T:p.R143I exonic ENSMUSG00000016481 nonsynonymous SNV ENSMUST00000075451:c.G542T:p.R181I 1qH6 NA NA chr1 196944017 TCTxTGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 91 0 0 36.270434 0.516129 0.02 -0.271487 15 16 420 380 60 60 0 0 CC 14.139403 47 0 1355 0 KEEP - Cr1l YES B[a]P_3 chr1 196944026 196944026 C A exonic Cr1l nonsynonymous SNV NM_013499:c.G533T:p.S178I exonic "Cr1l,Crry" nonsynonymous SNV uc007eeu.1:c.G419T:p.S140I exonic ENSMUSG00000016481 nonsynonymous SNV ENSMUST00000075451:c.G533T:p.S178I 1qH6 NA NA chr1 196944026 GAAxTGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 99 0 0 42.574872 0.515152 0.02 -0.289332 16 17 446 444 60 60 0 0 CC 15.03887 50 0 1397 0 KEEP - Cr1l YES B[a]P_3 chr1 20991607 20991607 C A UTR3 Tram2 NA NA UTR3 Tram2 NA NA UTR3 ENSMUSG00000041779 NA NA 1qA4 NA NA chr1 20991607 TTCxTCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 91 0 0 32.315986 0.368421 0.02 -0.341939 24 14 659 365 60 60 0 0 CC 12.318615 41 0 1126 0 KEEP - Tram2 YES B[a]P_3 chr1 24543760 24543760 C A exonic Col19a1 synonymous SNV NM_007733:c.G339T:p.R113R exonic Col19a1 synonymous SNV uc007amq.1:c.G339T:p.R113R exonic ENSMUSG00000026141 synonymous SNV ENSMUST00000051344:c.G339T:p.R113R 1qA5 NA NA chr1 24543760 CCAxCGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 163 0 0 33.69265 0.262295 0.02 1.062528 45 16 1236 413 60 60 0 0 CC 22.856947 76 0 2105 0 KEEP - Col19a1 YES B[a]P_3 chr1 33893250 33893250 T G exonic Gm15455 nonsynonymous SNV NM_001161816:c.A2276C:p.K759T exonic Gm15455 nonsynonymous SNV uc011wiy.1:c.A2276C:p.K759T ncRNA_exonic ENSMUSG00000081402 NA NA 1qB "Score=0.970973;Name=No.4575,chrX:20224444" NA chr1 33893250 TACxTCC T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 131 0 0 15.671643 0.18 0.02 -0.43827 41 9 1097 216 60 60 0 0 TT 18.302378 61 0 1680 0 KEEP - Gm15455 NO B[a]P_3 chr1 34593109 34593109 C A intronic Cfc1 NA NA intronic Cfc1 NA NA intronic ENSMUSG00000026124 NA NA 1qB NA NA chr1 34593109 CCCxTCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 96 0 0 60.160074 0.69697 0.02 -0.289274 10 23 282 580 60 60 0 0 CC 14.740082 49 0 1395 0 KEEP + Cfc1 YES B[a]P_3 chr1 36496438 36496438 C A intronic Lman2l NA NA intronic Lman2l NA NA intronic ENSMUSG00000001143 NA NA 1qB NA NA chr1 36496438 AACxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 174 1 0 27.967165 0.276596 0.02 -0.41209 34 13 931 338 60 60 0 0 CC 26.16878 87 0 2430 0 KEEP - Lman2l YES B[a]P_3 chr1 37682342 37682342 C G exonic 2010300C02Rik nonsynonymous SNV NM_028096:c.G1319C:p.G440A exonic 2010300C02Rik nonsynonymous SNV uc007arw.1:c.G488C:p.G163A exonic ENSMUSG00000026090 nonsynonymous SNV ENSMUST00000162875:c.G1319C:p.G440A 1qB NA NA chr1 37682342 CCTxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.352299 0.353947 0.995343 34 0 0 14.517127 0.315789 0.02 -0.166601 13 6 356 168 60 60 0 0 CC 4.211246 14 0 394 0 KEEP - 2010300C02Rik NO B[a]P_3 chr1 38869400 38869400 C A exonic Lonrf2 synonymous SNV NM_001029878:c.G642T:p.A214A exonic Lonrf2 synonymous SNV uc007asx.1:c.G642T:p.A214A exonic ENSMUSG00000048814 synonymous SNV ENSMUST00000039612:c.G642T:p.A214A 1qB NA NA chr1 38869400 CAGxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 100 0 0 18.616601 0.32 0.02 -0.245223 17 8 401 216 60 60 0 0 CC 17.122407 57 0 1400 0 KEEP - Lonrf2 YES B[a]P_3 chr1 46589509 46589509 T A intergenic "Dnah7b(dist=159114),Slc39a10(dist=274880)" NA NA intergenic "AK219219(dist=116453),BC048766(dist=259164)" NA NA intergenic "ENSMUSG00000070199(dist=158349),ENSMUSG00000078595(dist=76297)" NA NA 1qC1.1 "Score=0.928627;Name=No.193,chr1:53673641" NA chr1 46589509 CCTxATC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 230 0 0 70.816048 0.359551 0.02 0.817186 57 32 1497 808 60 60 0 0 TT 35.789528 119 0 3252 0 KEEP NA Dnah7b NO B[a]P_3 chr1 46837476 46837476 C A intergenic "Dnah7b(dist=407081),Slc39a10(dist=26913)" NA NA intergenic "AK219219(dist=364420),BC048766(dist=11197)" NA NA intergenic "ENSMUSG00000078595(dist=154520),ENSMUSG00000025986(dist=26913)" NA NA 1qC1.1 "Score=0.938873;Name=No.185,chr1:46350627" NA chr1 46837476 TCCxAAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 161 0 0 46.387497 0.327869 0.02 1.053968 41 20 1110 536 60 60 0 0 CC 23.160271 77 0 2162 0 KEEP NA Dnah7b YES B[a]P_3 chr1 46892487 46892487 C A exonic Slc39a10 nonsynonymous SNV NM_172653:c.G499T:p.D167Y exonic Slc39a10 nonsynonymous SNV uc007axd.1:c.G499T:p.D167Y exonic ENSMUSG00000025986 nonsynonymous SNV ENSMUST00000027131:c.G499T:p.D167Y 1qC1.1 NA NA chr1 46892487 CATxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 83 0 0 37.41805 0.390244 0.02 -0.359467 25 16 698 417 60 60 0 0 CC 9.626759 32 0 922 0 KEEP - Slc39a10 YES B[a]P_3 chr1 54338556 54338556 C A intronic Ccdc150 NA NA intronic Ccdc150 NA NA intronic ENSMUSG00000025983 NA NA 1qC1.1 NA NA chr1 54338556 ATAxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 109 0 0 41.100433 0.5 0.02 -0.280488 16 16 402 431 60 60 0 0 CC 16.230492 54 0 1392 0 KEEP + Ccdc150 YES B[a]P_3 chr1 54724291 54724291 C G exonic Ankrd44 nonsynonymous SNV NM_001081433:c.G1849C:p.E617Q exonic Ankrd44 nonsynonymous SNV uc011wkz.1:c.G1849C:p.E617Q exonic ENSMUSG00000052331 nonsynonymous SNV ENSMUST00000044359:c.G1903C:p.E635Q 1qC1.1 NA NA chr1 54724291 CCTxCAC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 88 0 0 26.326526 0.305556 0.02 -0.324431 25 11 689 307 60 60 0 0 CC 11.129566 37 0 1045 0 KEEP - Ankrd44 NO B[a]P_3 chr1 62245239 62245239 G T exonic Pard3b nonsynonymous SNV NM_001081050:c.G1523T:p.G508V exonic Pard3b nonsynonymous SNV uc007bfe.2:c.G1523T:p.G508V exonic ENSMUSG00000052062 nonsynonymous SNV ENSMUST00000046451:c.G1523T:p.G508V 1qC2 NA NA chr1 62245239 CTGxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 148 2 0 45.137908 0.365385 0.02 1.141394 33 19 911 509 60 60 0 1 GG 21.955422 73 0 2001 0 KEEP + Pard3b YES B[a]P_3 chr1 66724695 66724695 C A exonic Unc80 synonymous SNV NM_175510:c.C8835A:p.S2945S exonic Unc80 synonymous SNV uc007bih.2:c.C8835A:p.S2945S exonic ENSMUSG00000055567 synonymous SNV ENSMUST00000050986:c.C3294A:p.S1098S 1qC3 NA NA chr1 66724695 CTCxGAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 84 0 0 19.237336 0.3 0.02 -0.280454 21 9 532 229 60 60 0 0 CC 11.724377 39 0 1026 0 KEEP + Unc80 YES B[a]P_3 chr1 66724696 66724696 G T exonic Unc80 nonsynonymous SNV NM_175510:c.G8836T:p.D2946Y exonic Unc80 nonsynonymous SNV uc007bih.2:c.G8836T:p.D2946Y exonic ENSMUSG00000055567 nonsynonymous SNV ENSMUST00000050986:c.G3295T:p.D1099Y 1qC3 NA NA chr1 66724696 TCCxACC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 84 0 0 18.896042 0.310345 0.02 -0.271613 20 9 496 224 60 60 0 0 GG 11.672775 39 0 967 0 KEEP + Unc80 YES B[a]P_3 chr1 67260632 67260632 C T exonic Cps1 synonymous SNV NM_001080809:c.C3708T:p.I1236I exonic Cps1 synonymous SNV uc007biy.1:c.C3708T:p.I1236I exonic ENSMUSG00000025991 synonymous SNV ENSMUST00000027144:c.C3708T:p.I1236I 1qC3 NA NA chr1 67260632 CATxTCT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 86 1 0 25.825442 0.333333 0.02 -0.289367 22 11 618 297 60 60 0 0 CC 12.632599 42 0 1187 0 KEEP + Cps1 NO B[a]P_3 chr1 68090485 68090485 C A intronic Erbb4 NA NA exonic Erbb4 synonymous SNV uc007bjc.1:c.G204T:p.S68S exonic ENSMUSG00000062209 synonymous SNV ENSMUST00000119142:c.G3180T:p.S1060S 1qC3 NA NA chr1 68090485 TCCxGAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 226 0 0 57.032166 0.304878 0.02 0.878463 57 25 1511 670 60 60 0 0 CC 32.168738 107 0 2835 0 KEEP - Erbb4 YES B[a]P_3 chr1 71650210 71650210 T G intronic Fn1 NA NA intronic Fn1 NA NA intronic ENSMUSG00000026193 NA NA 1qC3 NA NA chr1 71650210 GGGxGGT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 79 2 0 63.142384 0.733333 0.02 -0.262822 8 22 186 602 60 60 0 0 TT 11.705214 39 0 975 0 KEEP - Fn1 NO B[a]P_3 chr1 7167980 7167980 T G intergenic "Pcmtd1(dist=4271),Sntg1(dist=1184762)" NA NA intergenic "Pcmtd1(dist=4271),AK043789(dist=171507)" NA NA ncRNA_exonic ENSMUSG00000048538 NA NA 1qA1 "Score=0.989443;Name=No.61666,chr16:46153101" NA chr1 7167980 GCCxGCA T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.64127 0.641347 0.999879 54 0 0 13.403766 0.25 0.02 -0.245447 21 7 567 169 60 60 0 0 TT 6.617327 22 0 612 0 KEEP NA Pcmtd1 NO B[a]P_3 chr1 72330666 72330666 C A splicing Pecr(NM_023523:exon2:c.124+1G>T) NA NA splicing "Pecr(uc007bki.2:exon2:c.124+1G>T,uc007bkj.2:exon2:c.124+1G>T)" NA NA splicing "ENSMUSG00000026189(ENSMUST00000134840:exon2:c.124+1G>T,ENSMUST00000129458:exon2:c.124+1G>T,ENSMUST00000027381:exon2:c.124+1G>T,ENSMUST00000097698:exon2:c.124+1G>T)" NA NA 1qC3 NA NA chr1 72330666 GTAxCCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 54 0 0 7.915835 0.166667 0.02 -0.210435 20 4 545 107 60 60 0 0 CC 6.903865 23 0 592 0 KEEP - Pecr YES B[a]P_3 chr1 74965913 74965913 G C exonic Ccdc108 nonsynonymous SNV NM_001039495:c.C2608G:p.L870V exonic Ccdc108 nonsynonymous SNV uc007bnj.1:c.C2608G:p.L870V exonic ENSMUSG00000047021 nonsynonymous SNV ENSMUST00000094844:c.C2608G:p.L870V 1qC3 NA NA chr1 74965913 TTAxTGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 117 0 0 30.234232 0.254902 0.02 1.24811 38 13 1028 366 60 60 0 0 GG 15.03861 50 0 1384 0 KEEP - Ccdc108 NO B[a]P_3 chr1 74974218 74974218 C A exonic Ccdc108 nonsynonymous SNV NM_001039495:c.G883T:p.V295L exonic Ccdc108 nonsynonymous SNV uc007bnk.1:c.G595T:p.V199L exonic ENSMUSG00000047021 nonsynonymous SNV ENSMUST00000094844:c.G883T:p.V295L 1qC3 NA NA chr1 74974218 CCAxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 0.999999 85 0 0 24.521592 0.289474 0.02 -0.341855 27 11 697 292 60 60 0 0 CC 10.820209 36 0 919 0 KEEP - Ccdc108 YES B[a]P_3 chr1 75403226 75403226 G T exonic Speg nonsynonymous SNV NM_001085370:c.G1184T:p.R395L exonic Speg nonsynonymous SNV uc007bpc.1:c.G1184T:p.R395L exonic ENSMUSG00000026207 nonsynonymous SNV ENSMUST00000087122:c.G3389T:p.R1130L 1qC4 NA NA chr1 75403226 CCCxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 58 0 0 12.353614 0.193548 0.02 -0.271651 25 6 621 161 60 60 0 0 GG 7.513661 25 0 641 0 KEEP + Speg YES B[a]P_3 chr1 75465841 75465841 G A intronic Asic4 NA NA intronic Accn4 NA NA intronic ENSMUSG00000033007 NA NA 1qC4 NA NA chr1 75465841 GGCxGGA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 36 0 0 14.169678 0.352941 0.02 -0.149022 11 6 290 161 60 60 0 0 GG 4.211072 14 0 390 0 KEEP + Asic4 NO B[a]P_3 chr1 77423346 77423346 G T exonic Epha4 stopgain SNV NM_007936:c.C1098A:p.C366X exonic Epha4 stopgain SNV uc007bpz.1:c.C1098A:p.C366X exonic ENSMUSG00000026235 stopgain SNV ENSMUST00000027451:c.C1098A:p.C366X 1qC4 NA NA chr1 77423346 CTTxCAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 51 1 0 8.364332 0.2 0.02 -0.175363 16 4 435 108 60 60 0 0 GG 8.120583 27 0 740 0 KEEP - Epha4 YES B[a]P_3 chr1 78519230 78519230 C A intronic Mogat1 NA NA intronic Mogat1 NA NA intronic ENSMUSG00000012187 NA NA 1qC4 NA NA chr1 78519230 GCCxATT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423472 0.423478 0.999988 52 1 0 13.657135 0.3 0.02 -0.184135 14 6 387 161 60 60 0 0 CC 8.118598 27 0 726 0 KEEP + Mogat1 YES B[a]P_3 chr1 82285365 82285365 C A exonic Irs1 synonymous SNV NM_010570:c.G1704T:p.R568R exonic Irs1 synonymous SNV uc007brp.2:c.G1704T:p.R568R exonic ENSMUSG00000055980 synonymous SNV ENSMUST00000069799:c.G1704T:p.R568R 1qC5 NA NA chr1 82285365 ATGxCGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 196 1 0 48.894318 0.306667 0.02 0.84249 52 23 1421 580 60 60 0 0 CC 27.354267 91 0 2504 0 KEEP - Irs1 YES B[a]P_3 chr1 82453494 82453494 G T intronic Col4a4 NA NA intronic Col4a4 NA NA intronic ENSMUSG00000067158 NA NA 1qC5 NA NA chr1 82453494 GTGxTAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 57 0 0 7.764298 0.210526 0.02 -0.175345 15 4 403 101 60 60 0 0 GG 9.274781 31 0 809 0 KEEP - Col4a4 YES B[a]P_3 chr1 82656857 82656857 C G exonic Col4a3 nonsynonymous SNV NM_007734:c.C824G:p.P275R exonic Col4a3 nonsynonymous SNV uc007brv.1:c.C824G:p.P275R exonic ENSMUSG00000079465 nonsynonymous SNV ENSMUST00000113457:c.C824G:p.P275R 1qC5 NA NA chr1 82656857 GACxCTC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 130 0 0 67.3462 0.509804 0.02 1.24805 25 26 695 703 60 60 0 0 CC 16.21686 54 0 1471 0 KEEP + Col4a3 NO B[a]P_3 chr1 87738843 87738843 G T exonic Cab39 nonsynonymous SNV NM_133781:c.G469T:p.A157S exonic Cab39 nonsynonymous SNV uc007bum.2:c.G469T:p.A157S exonic ENSMUSG00000036707 nonsynonymous SNV ENSMUST00000082149:c.G469T:p.A157S 1qC5 NA NA chr1 87738843 CTTxCAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 85 0 0 58.043513 0.677419 0.02 -0.27181 10 21 276 565 60 60 0 0 GG 12.33423 41 0 1179 0 KEEP + Cab39 YES B[a]P_3 chr1 89564552 89564552 A T exonic Inpp5d synonymous SNV NM_001110192:c.A444T:p.A148A exonic Inpp5d synonymous SNV uc007bxc.2:c.A447T:p.A149A exonic ENSMUSG00000026288 synonymous SNV ENSMUST00000042275:c.A444T:p.A148A 1qD NA NA chr1 89564552 TGCxACA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 127 0 0 83.407891 0.653061 0.02 -0.429524 17 32 448 819 60 60 0 0 AA 18.641958 62 0 1662 0 KEEP + Inpp5d NO B[a]P_3 chr1 89687810 89687810 G T exonic Atg16l1 nonsynonymous SNV NM_001205392:c.G1693T:p.A565S exonic Atg16l1 nonsynonymous SNV uc007bxn.1:c.G1693T:p.A565S exonic ENSMUSG00000026289 nonsynonymous SNV ENSMUST00000113186:c.G1693T:p.A565S 1qD NA NA chr1 89687810 GTGxCGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 145 2 0 90.247576 0.614035 0.02 1.000507 22 35 596 901 60 60 0 0 GG 18.645022 62 0 1712 0 KEEP + Atg16l1 YES B[a]P_3 chr1 89922540 89922540 G C intergenic "Usp40(dist=17414),Ugt1a10(dist=29446)" NA NA intergenic "Usp40(dist=17414),Ugt1a10(dist=29446)" NA NA ncRNA_exonic ENSMUSG00000083478 NA NA 1qD "Score=0.961098;Name=No.335,chr1:89951073" NA chr1 89922540 TATxCAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 340 2 25 82.629334 0.309735 0.02 2.203847 78 35 2147 963 60 60 0 0 AG 49.289115 164 0 4193 0 KEEP NA Usp40 NO B[a]P_3 chr1 90261588 90261588 A T intronic Trpm8 NA NA intronic Trpm8 NA NA intronic ENSMUSG00000036251 NA NA 1qD NA NA chr1 90261588 CTCxCTG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.99986 31 0 0 7.24377 0.333333 0.02 -0.078907 6 3 157 83 60 60 0 0 AA 5.714537 19 0 521 0 KEEP + Trpm8 NO B[a]P_3 chr1 92700199 92700199 C A intronic Col6a3 NA NA intronic Col6a3 NA NA intronic ENSMUSG00000048126 NA NA 1qD NA NA chr1 92700199 GTGxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119602 0.120436 0.993072 24 0 0 18.90506 0.636364 0.02 -0.096446 4 7 109 187 60 60 0 0 CC 3.306813 11 0 289 0 KEEP - Col6a3 YES B[a]P_3 chr1 92997906 92997906 G T intronic Lrrfip1 NA NA intronic Lrrfip1 NA NA intronic ENSMUSG00000026305 NA NA 1qD NA NA chr1 92997906 CACxTGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 69 0 0 15.38235 0.241379 0.02 -0.254226 22 7 577 190 60 60 0 0 GG 11.424086 38 0 991 0 KEEP + Lrrfip1 YES B[a]P_3 chr1 93205299 93205299 C A exonic Scly synonymous SNV NM_016717:c.C648A:p.V216V exonic Scly synonymous SNV uc007cae.1:c.C648A:p.V216V exonic ENSMUSG00000026307 synonymous SNV ENSMUST00000137074:c.C486A:p.V162V 1qD NA NA chr1 93205299 AGTxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.758065 0.760887 0.996292 64 0 0 15.581689 0.242424 0.02 -0.28933 25 8 698 197 60 60 0 0 CC 8.120683 27 0 755 0 KEEP + Scly YES B[a]P_3 chr1 94538462 94538462 C A exonic Myeov2 nonsynonymous SNV NM_001163425:c.G58T:p.D20Y exonic Myeov2 nonsynonymous SNV uc007cbq.2:c.G58T:p.D20Y exonic ENSMUSG00000073616 nonsynonymous SNV ENSMUST00000097642:c.G58T:p.D20Y 1qD NA NA chr1 94538462 CATxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 159 0 0 141.1581 0.622222 0.02 0.711039 34 56 954 1404 60 60 0 0 CC 13.167373 51 1 1443 20 KEEP - Myeov2 YES B[a]P_3 chr1 94773694 94773694 C G exonic Ankmy1 nonsynonymous SNV NM_172850:c.G2453C:p.R818P exonic Ankmy1 nonsynonymous SNV uc007cbt.1:c.G2453C:p.R818P exonic ENSMUSG00000034212 nonsynonymous SNV ENSMUST00000045770:c.G2165C:p.R722P 1qD NA NA chr1 94773694 AGCxGGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 82 0 0 19.109018 0.25 0.02 -0.315371 27 9 636 236 60 60 0 0 CC 11.396752 38 0 908 0 KEEP - Ankmy1 NO B[a]P_3 chr1 94775984 94775984 C G exonic Ankmy1 nonsynonymous SNV NM_172850:c.G2221C:p.V741L exonic Ankmy1 nonsynonymous SNV uc007cbt.1:c.G2221C:p.V741L exonic ENSMUSG00000034212 nonsynonymous SNV ENSMUST00000045770:c.G1933C:p.V645L 1qD NA NA chr1 94775984 GCAxGAT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353904 0.353947 0.999879 45 1 0 14.020203 0.315789 0.02 -0.166445 13 6 297 163 60 60 0 0 CC 6.305961 21 0 488 0 KEEP - Ankmy1 NO B[a]P_3 chr1 95203389 95203389 G A upstream Mterfd2 NA NA upstream Mterfd2 NA NA upstream ENSMUSG00000026273 NA NA 1qD NA NA chr1 95203389 AATxTGG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.918171 0.918171 1 188 0 2 17.118777 0.204545 0.02 -0.38578 35 9 962 225 60 60 0 0 GG 36.394714 121 0 3387 0 KEEP - Mterfd2 NO B[a]P_3 chr1 9727113 9727113 C A exonic Vcpip1 nonsynonymous SNV NM_173443:c.G2728T:p.A910S exonic Vcpip1 nonsynonymous SNV uc007ags.1:c.G2728T:p.A910S exonic ENSMUSG00000045210 nonsynonymous SNV ENSMUST00000057438:c.G2728T:p.A910S 1qA2 NA NA chr1 9727113 TTGxATA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 87 0 0 7.993448 0.148148 0.02 -0.236762 23 4 641 110 60 60 0 0 CC 14.138916 47 0 1346 0 KEEP - Vcpip1 YES B[a]P_3 chr2 102390325 102390325 G T UTR5 Pamr1 NA NA UTR5 Pamr1 NA NA UTR5 ENSMUSG00000027188 NA NA 2qE2 NA NA chr2 102390325 TCGxTAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 218 2 0 93.40587 0.428571 0.02 0.790737 52 39 1424 1018 60 60 0 0 GG 28.501426 95 0 2588 0 KEEP + Pamr1 YES B[a]P_3 chr2 104537791 104537791 C A exonic Tcp11l1 nonsynonymous SNV NM_177190:c.G514T:p.G172W exonic Tcp11l1 nonsynonymous SNV uc008lkc.1:c.G289T:p.G97W exonic ENSMUSG00000027175 nonsynonymous SNV ENSMUST00000028597:c.G514T:p.G172W 2qE2 NA NA chr2 104537791 CCCxATT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 135 3 0 39.589712 0.34 0.02 -0.438422 33 17 918 454 60 60 0 0 CC 18.644303 62 0 1767 0 KEEP - Tcp11l1 YES B[a]P_3 chr2 106225691 106225691 G T intergenic "Dnajc24(dist=381985),Gm14015(dist=78289)" NA NA exonic Dcdc5 nonsynonymous SNV uc008llk.1:c.G193T:p.V65L exonic ENSMUSG00000074981 nonsynonymous SNV ENSMUST00000037284:c.G193T:p.V65L 2qE3 NA NA chr2 106225691 TACxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.45615 0.457757 0.99649 39 0 0 24.986825 0.454545 0.02 -0.192861 12 10 310 268 60 60 0 0 GG 4.510438 15 0 400 0 KEEP NA Dnajc24 YES B[a]P_3 chr2 111260742 111260742 C G exonic Olfr1286 nonsynonymous SNV NM_207254:c.G365C:p.R122P exonic Olfr1286 nonsynonymous SNV uc008lnm.1:c.G365C:p.R122P exonic ENSMUSG00000074963 nonsynonymous SNV ENSMUST00000099617:c.G365C:p.R122P 2qE3 "Score=0.939414;Name=No.75320,chr2:111165600" NA chr2 111260742 TACxGGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 446 0 30 207.398008 0.505882 0.02 3.304047 84 86 2001 2175 60 60 0 0 CC 62.787382 209 0 5196 0 KEEP - Olfr1286 NO B[a]P_3 chr2 111289608 111289608 G T exonic Olfr1287 nonsynonymous SNV NM_001011773:c.G310T:p.V104L exonic Olfr1287 nonsynonymous SNV uc008lnn.1:c.G310T:p.V104L exonic ENSMUSG00000063377 nonsynonymous SNV ENSMUST00000075390:c.G310T:p.V104L 2qE3 "Score=0.946331;Name=No.75321,chr2:111205518" NA chr2 111289608 TGTxTGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 436 0 0 289.109744 0.533654 0.02 4.565617 97 111 2668 2986 60 60 0 0 GG 57.207588 196 2 5474 15 KEEP + Olfr1287 YES B[a]P_3 chr2 112090179 112090179 C G exonic Nutm1 nonsynonymous SNV NM_172521:c.G1547C:p.G516A exonic BC125332 nonsynonymous SNV uc008loq.1:c.G1547C:p.G516A exonic ENSMUSG00000041358 nonsynonymous SNV ENSMUST00000043970:c.G1547C:p.G516A 2qE3 NA NA chr2 112090179 ATGxCCG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 182 2 0 116.063938 0.564103 0.02 1.012675 34 44 923 1184 60 60 0 0 CC 22.848868 76 0 2075 0 KEEP - Nutm1 NO B[a]P_3 chr2 113667687 113667687 C G exonic Scg5 nonsynonymous SNV NM_009162:c.G35C:p.G12A exonic Scg5 nonsynonymous SNV uc008lpq.1:c.G35C:p.G12A exonic ENSMUSG00000023236 nonsynonymous SNV ENSMUST00000024005:c.G35C:p.G12A 2qE4 NA NA chr2 113667687 AGGxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 115 0 0 9.035828 0.119048 0.02 -0.368287 37 5 1028 133 60 60 0 0 CC 16.543341 55 0 1532 0 KEEP - Scg5 NO B[a]P_3 chr2 118519283 118519283 G A exonic Pak6 synonymous SNV NM_001145854:c.G1182A:p.A394A exonic Pak6 synonymous SNV uc008lsg.2:c.G1182A:p.A394A exonic ENSMUSG00000074923 synonymous SNV ENSMUST00000110853:c.G1182A:p.A394A 2qE5 NA NA chr2 118519283 TGCxCTC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 263 0 0 170.310329 0.534884 0.02 1.869618 60 69 1480 1761 60 60 0 0 GG 32.066448 107 0 2672 0 KEEP + Pak6 NO B[a]P_3 chr2 118529359 118529359 C A UTR5 Ankrd63 NA NA UTR5 Gm1337 NA NA UTR5 ENSMUSG00000078137 NA NA 2qE5 NA NA chr2 118529359 TCCxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 110 0 0 57.884103 0.45283 0.02 1.115227 29 24 796 623 60 60 0 1 CC 14.136568 47 0 1315 0 KEEP - Ankrd63 YES B[a]P_3 chr2 118612490 118612490 C T intronic Disp2 NA NA UTR5 Disp2 NA NA intronic ENSMUSG00000040035 NA NA 2qE5 NA NA chr2 118612490 GCTxCCA C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 209 1 0 136.737051 0.490909 0.02 2.203868 56 54 1584 1441 60 60 0 0 CC 22.259401 74 0 2092 0 KEEP + Disp2 NO B[a]P_3 chr2 120855873 120855873 C A intronic Epb4.2 NA NA intronic Epb4.2 NA NA intronic ENSMUSG00000023216 NA NA 2qE5 NA NA chr2 120855873 CCTxCAT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138942 0.139832 0.993634 28 0 0 11.543795 0.416667 0.02 -0.10521 7 5 195 127 60 60 0 0 CC 3.60984 12 0 341 0 KEEP - Epb4.2 YES B[a]P_3 chr2 121184542 121184542 G T UTR5 Ckmt1 NA NA UTR5 Ckmt1 NA NA UTR5 ENSMUSG00000000308 NA NA 2qE5 NA NA chr2 121184542 CTTxCGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 205 0 0 111.357668 0.473118 0.02 0.773487 49 44 1330 1183 60 60 0 0 GG 26.461249 88 0 2491 0 KEEP + Ckmt1 YES B[a]P_3 chr2 122106794 122106794 G C exonic Duox2 nonsynonymous SNV NM_177610:c.C4158G:p.I1386M exonic Duox2 nonsynonymous SNV uc008mak.1:c.C4158G:p.I1386M exonic ENSMUSG00000068452 nonsynonymous SNV ENSMUST00000053734:c.C4158G:p.I1386M 2qE5 NA NA chr2 122106794 CCAxATG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 63 2 1 58.323152 0.740741 0.02 -0.254303 7 20 198 555 60 60 0 0 GG 8.423438 28 0 806 0 KEEP - Duox2 NO B[a]P_3 chr2 125168686 125168686 C A intronic Fbn1 NA NA intronic Fbn1 NA NA intronic ENSMUSG00000027204 NA NA 2qF1 NA NA chr2 125168686 ACAxGAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 123 0 0 77.484562 0.537037 0.02 1.124703 25 29 559 798 60 60 0 0 CC 16.170374 54 0 1285 0 KEEP - Fbn1 YES B[a]P_3 chr2 125390092 125390092 T A exonic Cep152 stopgain SNV NM_001081091:c.A4255T:p.R1419X exonic "AK028650,Cep152" stopgain SNV uc008mct.1:c.A19T:p.R7X exonic ENSMUSG00000068394 stopgain SNV ENSMUST00000089776:c.A4255T:p.R1419X 2qF1 NA NA chr2 125390092 ATCxTTC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 147 0 0 74.929503 0.450704 0.02 0.868812 39 32 1053 809 60 60 0 0 TT 18.647484 62 0 1716 0 KEEP - Cep152 NO B[a]P_3 chr2 127044220 127044220 G A exonic Snrnp200 synonymous SNV NM_177214:c.G1647A:p.Q549Q exonic Snrnp200 synonymous SNV uc008mez.1:c.G1647A:p.Q549Q exonic ENSMUSG00000003660 synonymous SNV ENSMUST00000052695:c.G1647A:p.Q549Q 2qF1 NA NA chr2 127044220 CCAxGAG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999998 78 0 0 54.474214 0.512195 0.02 -0.359484 20 21 551 568 60 60 0 0 GG 9.91457 33 0 913 0 KEEP + Snrnp200 NO B[a]P_3 chr2 127055794 127055794 G C intronic Snrnp200 NA NA intronic Snrnp200 NA NA intronic ENSMUSG00000003660 NA NA 2qF1 NA NA chr2 127055794 TCAxATG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 112 1 0 77.97454 0.54717 0.02 1.221701 24 29 680 800 60 60 0 0 GG 14.733554 49 0 1394 0 KEEP + Snrnp200 NO B[a]P_3 chr2 127064368 127064368 G T exonic Snrnp200 stopgain SNV NM_177214:c.G6064T:p.E2022X exonic Snrnp200 stopgain SNV uc008mfa.1:c.G1105T:p.E369X exonic ENSMUSG00000003660 stopgain SNV ENSMUST00000103220:c.G6064T:p.E2022X 2qF1 NA NA chr2 127064368 TATxAAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 122 0 0 67.517936 0.509434 0.02 1.132656 26 27 729 706 60 60 0 0 GG 16.846528 56 0 1608 0 KEEP + Snrnp200 YES B[a]P_3 chr2 127190402 127190402 C A exonic Adra2b synonymous SNV NM_009633:c.C1102A:p.R368R exonic Adra2b synonymous SNV uc008mfi.1:c.C1102A:p.R368R exonic ENSMUSG00000058620 synonymous SNV ENSMUST00000071902:c.C1102A:p.R368R 2qF1 NA NA chr2 127190402 AGCxGAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 330 0 0 171.274222 0.46 0.02 1.880335 81 69 1982 1833 60 60 0 0 CC 47.702137 159 0 3845 0 KEEP + Adra2b YES B[a]P_3 chr2 128555302 128555302 G T exonic Mertk stopgain SNV NM_008587:c.G439T:p.E147X exonic Mertk stopgain SNV uc008mgt.1:c.G439T:p.E147X exonic ENSMUSG00000014361 stopgain SNV ENSMUST00000014505:c.G439T:p.E147X 2qF1 NA NA chr2 128555302 GAGxAAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522089 0.522161 0.999863 50 1 0 25.252617 0.458333 0.02 -0.210399 13 11 362 272 60 60 0 0 GG 6.016655 20 0 574 0 KEEP + Mertk YES B[a]P_3 chr2 128618839 128618839 G T exonic Mertk nonsynonymous SNV NM_008587:c.G2332T:p.V778L exonic Mertk nonsynonymous SNV uc008mgu.1:c.G544T:p.V182L exonic ENSMUSG00000014361 nonsynonymous SNV ENSMUST00000014505:c.G2332T:p.V778L 2qF1 NA NA chr2 128618839 GACxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 102 0 0 35.86858 0.375 0.02 -0.350508 25 15 619 402 60 60 0 0 GG 14.729426 49 0 1266 0 KEEP + Mertk YES B[a]P_3 chr2 129133611 129133611 G T intronic Il1a NA NA intronic Il1a NA NA intronic ENSMUSG00000027399 NA NA 2qF1 NA NA chr2 129133611 CATxTAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 107 0 0 53.974082 0.488372 0.02 -0.377039 22 21 605 569 60 60 0 0 GG 14.740903 49 0 1412 0 KEEP - Il1a YES B[a]P_3 chr2 130440090 130440090 C A exonic Fastkd5 nonsynonymous SNV NM_001146084:c.G2315T:p.G772V exonic Fastkd5 nonsynonymous SNV uc008mjm.2:c.G2315T:p.G772V exonic ENSMUSG00000079043 nonsynonymous SNV ENSMUST00000110262:c.G2315T:p.G772V 2qF1 NA NA chr2 130440090 TACxCAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 114 0 0 34.094536 0.340909 0.02 -0.385769 29 15 788 392 60 60 0 0 CC 16.516727 55 0 1498 0 KEEP - Fastkd5 YES B[a]P_3 chr2 130510792 130510792 G A intronic Slc4a11 NA NA intronic Slc4a11 NA NA intronic ENSMUSG00000074796 NA NA 2qF1 NA NA chr2 130510792 CCTxTGA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 36 0 0 19.008008 0.470588 0.02 -0.149036 9 8 246 203 60 60 0 0 GG 4.510725 15 0 413 0 KEEP - Slc4a11 NO B[a]P_3 chr2 130593349 130593349 C A exonic 4930402H24Rik nonsynonymous SNV NM_029432:c.G1542T:p.W514C exonic 4930402H24Rik nonsynonymous SNV uc008mjw.1:c.G1149T:p.W383C exonic ENSMUSG00000027309 nonsynonymous SNV ENSMUST00000044766:c.G1542T:p.W514C 2qF1 NA NA chr2 130593349 CAGxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800211 0.800245 0.999957 76 0 0 30.472176 0.371429 0.02 -0.306886 22 13 611 343 60 60 0 0 CC 7.820614 26 0 726 0 KEEP - 4930402H24Rik YES B[a]P_3 chr2 130617761 130617761 C A intronic 4930402H24Rik NA NA intronic 4930402H24Rik NA NA intronic ENSMUSG00000027309 NA NA 2qF1 NA NA chr2 130617761 CCCxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 45 0 0 23.398892 0.47619 0.02 -0.183405 11 10 303 250 60 60 0 0 CC 5.114138 17 0 488 0 KEEP - 4930402H24Rik YES B[a]P_3 chr2 133387367 133387367 C G exonic Bmp2 nonsynonymous SNV NM_007553:c.C1101G:p.I367M exonic Bmp2 nonsynonymous SNV uc008mnr.1:c.C1101G:p.I367M exonic ENSMUSG00000027358 nonsynonymous SNV ENSMUST00000028836:c.C1101G:p.I367M 2qF2 NA NA chr2 133387367 AATxTCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38736 0.387407 0.999879 51 2 0 22.714475 0.45 0.02 -0.175374 11 9 309 244 60 60 0 0 CC 6.618495 22 0 635 0 KEEP + Bmp2 NO B[a]P_3 chr2 144214959 144214959 G T exonic Csrp2bp synonymous SNV NM_001166640:c.G165T:p.V55V exonic Csrp2bp synonymous SNV uc008mqy.2:c.G549T:p.V183V exonic ENSMUSG00000027425 synonymous SNV ENSMUST00000028911:c.G549T:p.V183V 2qG1 NA NA chr2 144214959 CGTxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 127 0 0 85.118871 0.581818 0.02 1.115097 23 32 636 861 60 60 0 0 GG 15.641446 52 0 1469 0 KEEP + Csrp2bp YES B[a]P_3 chr2 144385153 144385153 G A exonic Sec23b nonsynonymous SNV NM_001252543:c.G197A:p.C66Y exonic Sec23b nonsynonymous SNV uc008mrj.1:c.G197A:p.C66Y exonic ENSMUSG00000027429 nonsynonymous SNV ENSMUST00000028916:c.G197A:p.C66Y 2qG1 NA NA chr2 144385153 CCTxCAA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 169 0 0 59.407169 0.4 0.02 0.860533 39 26 1057 660 60 60 0 0 GG 23.735402 79 0 2166 0 KEEP + Sec23b NO B[a]P_3 chr2 144409428 144409428 G T exonic Sec23b nonsynonymous SNV NM_001281816:c.G1211T:p.C404F exonic Sec23b nonsynonymous SNV uc008mrj.1:c.G1667T:p.C556F exonic ENSMUSG00000027429 nonsynonymous SNV ENSMUST00000028916:c.G1667T:p.C556F 2qG1 NA NA chr2 144409428 AGTxTCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 84 2 0 34.447292 0.4 0.02 -0.306901 21 14 584 380 60 60 0 0 GG 11.129791 37 0 1048 0 KEEP + Sec23b YES B[a]P_3 chr2 152435609 152435609 A T intronic Defb36 NA NA intronic Defb36 NA NA intronic ENSMUSG00000044863 NA NA 2qH1 NA NA chr2 152435609 AATxAGT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999997 76 2 0 56.329988 0.709677 0.02 -0.271413 9 22 240 540 60 60 0 0 AA 9.625171 32 0 890 0 KEEP + Defb36 NO B[a]P_3 chr2 152818877 152818877 C T intronic Ttll9 NA NA intronic Ttll9 NA NA intronic ENSMUSG00000074673 NA NA 2qH1 NA NA chr2 152818877 ATCxTTT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 220 0 0 57.017428 0.290698 0.02 0.843288 61 25 1669 676 60 60 0 0 CC 32.786327 109 0 3064 0 KEEP + Ttll9 NO B[a]P_3 chr2 154179826 154179826 C A exonic Cdk5rap1 nonsynonymous SNV NM_025876:c.G873T:p.Q291H exonic Cdk5rap1 nonsynonymous SNV uc008njb.1:c.G873T:p.Q291H exonic ENSMUSG00000027487 nonsynonymous SNV ENSMUST00000028990:c.G873T:p.Q291H 2qH1 NA NA chr2 154179826 CACxTGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 57 2 0 7.66962 0.222222 0.02 -0.157817 14 4 387 99 60 60 0 0 CC 8.423442 28 0 808 0 KEEP - Cdk5rap1 YES B[a]P_3 chr2 154459895 154459895 A C exonic Zfp341 nonsynonymous SNV NM_199304:c.A1286C:p.K429T exonic Zfp341 nonsynonymous SNV uc008njo.1:c.A1286C:p.K429T exonic ENSMUSG00000059842 nonsynonymous SNV ENSMUST00000081926:c.A1286C:p.K429T 2qH1 NA NA chr2 154459895 ACAxGCC A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490475 0.490544 0.999859 46 0 0 19.404043 0.391304 0.02 -0.201544 14 9 363 218 60 60 0 0 AA 5.414186 18 0 502 0 KEEP + Zfp341 NO B[a]P_3 chr2 155770371 155770371 T C exonic Gdf5 nonsynonymous SNV NM_008109:c.A421G:p.K141E exonic Gdf5 nonsynonymous SNV uc012chg.1:c.A421G:p.K141E exonic ENSMUSG00000038259 nonsynonymous SNV ENSMUST00000040162:c.A421G:p.K141E 2qH1 NA NA chr2 155770371 TCTxCAG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 248 0 0 182.18251 0.640777 0.02 2.47927 37 66 997 1800 60 60 0 0 TT 33.965125 113 0 3100 0 KEEP - Gdf5 NO B[a]P_3 chr2 156178963 156178963 G T exonic Cnbd2 synonymous SNV NM_027585:c.G1158T:p.L386L exonic 4921517L17Rik synonymous SNV uc008nnd.2:c.G1158T:p.L386L exonic ENSMUSG00000038085 synonymous SNV ENSMUST00000037096:c.G1158T:p.L386L 2qH1 NA NA chr2 156178963 CCTxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 76 0 0 31.612312 0.40625 0.02 -0.289362 19 13 530 348 60 60 0 0 GG 10.227007 34 0 963 0 KEEP + Cnbd2 YES B[a]P_3 chr2 156732149 156732149 C G intergenic "Sla2(dist=19335),Ndrg3(dist=20929)" NA NA intergenic "Sla2(dist=19335),Ndrg3(dist=20929)" NA NA ncRNA_exonic ENSMUSG00000080880 NA NA 2qH1 "Score=0.914602;Name=No.75418,chr2:156765512" NA chr2 156732149 GAGxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 161 2 1 90.386307 0.539683 0.02 1.045927 29 34 770 930 60 60 0 0 CC 21.225983 71 0 1895 0 KEEP NA Sla2 NO B[a]P_3 chr2 157643825 157643825 G T exonic Ctnnbl1 nonsynonymous SNV NM_025680:c.G862T:p.V288L exonic Ctnnbl1 nonsynonymous SNV uc008nph.2:c.G862T:p.V288L exonic ENSMUSG00000027649 nonsynonymous SNV ENSMUST00000029178:c.G862T:p.V288L 2qH1 NA NA chr2 157643825 GACxTGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 49 0 0 19.558205 0.380952 0.02 -0.184046 13 8 318 218 60 60 0 0 GG 6.580356 22 0 498 0 KEEP + Ctnnbl1 YES B[a]P_3 chr2 161384663 161384663 G T exonic Ptprt nonsynonymous SNV NM_021464:c.C3129A:p.S1043R exonic Ptprt nonsynonymous SNV uc008nru.1:c.C756A:p.S252R exonic ENSMUSG00000053141 nonsynonymous SNV ENSMUST00000109445:c.C3129A:p.S1043R 2qH2 NA NA chr2 161384663 CCAxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 32 0 0 36.265167 0.764706 0.02 -0.149044 4 13 112 341 60 60 0 0 GG 4.210731 14 0 385 0 KEEP - Ptprt YES B[a]P_3 chr2 163051194 163051194 T C UTR5 Tox2 NA NA UTR5 Tox2 NA NA exonic ENSMUSG00000074607 synonymous SNV ENSMUST00000099110:c.T96C:p.S32S 2qH3 NA NA chr2 163051194 TTCxGTG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522089 0.522161 0.999863 49 0 0 20.90487 0.391304 0.02 -0.210376 14 9 374 233 60 60 0 0 TT 6.014918 20 0 543 0 KEEP + Tox2 NO B[a]P_3 chr2 163276346 163276346 G T exonic Gdap1l1 stopgain SNV NM_144891:c.G592T:p.E198X exonic Gdap1l1 stopgain SNV uc008nst.2:c.G592T:p.E198X exonic ENSMUSG00000017943 stopgain SNV ENSMUST00000137070:c.G418T:p.E140X 2qH3 NA NA chr2 163276346 CACxAGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 78 2 0 7.49875 0.173913 0.02 -0.210282 19 4 471 102 60 60 0 0 GG 12.623038 42 0 1094 0 KEEP + Gdap1l1 YES B[a]P_3 chr2 163462642 163462642 C A exonic Serinc3 synonymous SNV NM_012032:c.G300T:p.R100R exonic Serinc3 synonymous SNV uc008ntg.2:c.G300T:p.R100R exonic ENSMUSG00000017707 synonymous SNV ENSMUST00000017851:c.G300T:p.R100R 2qH3 NA NA chr2 163462642 GATxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 103 0 0 17.961477 0.264706 0.02 -0.306852 25 9 697 222 60 60 0 0 CC 15.940988 53 0 1495 0 KEEP - Serinc3 YES B[a]P_3 chr2 164834926 164834926 G T exonic Ncoa5 nonsynonymous SNV NM_144892:c.C526A:p.R176S exonic Ncoa5 nonsynonymous SNV uc008nwv.1:c.C526A:p.R176S exonic ENSMUSG00000039804 nonsynonymous SNV ENSMUST00000040381:c.C526A:p.R176S 2qH3 NA NA chr2 164834926 TACxTCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 0.999997 54 0 0 34.561386 0.8 0.02 -0.131502 3 12 76 321 60 60 0 0 GG 9.314275 31 0 764 0 KEEP - Ncoa5 YES B[a]P_3 chr2 164888315 164888315 T C intronic Cd40 NA NA intronic Cd40 NA NA intronic ENSMUSG00000017652 NA NA 2qH3 NA NA chr2 164888315 TACxTGA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717228 0.717315 0.999879 63 0 0 30.939732 0.387097 0.02 -0.271827 19 12 513 342 60 60 0 0 TT 6.617205 22 0 611 0 KEEP + Cd40 NO B[a]P_3 chr2 166846008 166846008 A T exonic Ddx27 stopgain SNV NM_153065:c.A469T:p.K157X exonic Ddx27 stopgain SNV uc008nza.1:c.A469T:p.K157X exonic ENSMUSG00000017999 stopgain SNV ENSMUST00000018143:c.A469T:p.K157X 2qH3 NA NA chr2 166846008 CTCxAAG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 58 0 0 29.428145 0.461538 0.02 -0.227933 14 12 368 315 60 60 0 0 AA 8.120642 27 0 741 0 KEEP + Ddx27 NO B[a]P_3 chr2 167808585 167808585 G T exonic Fam65c nonsynonymous SNV NM_001080708:c.C2503A:p.R835S exonic Fam65c nonsynonymous SNV uc008oal.1:c.C2503A:p.R835S exonic ENSMUSG00000074577 nonsynonymous SNV ENSMUST00000099073:c.C2503A:p.R835S 2qH3 NA NA chr2 167808585 GGCxCGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 248 2 0 39.315517 0.233766 0.02 0.922565 59 18 1469 489 60 60 0 0 GG 39.045286 130 0 3305 0 KEEP - Fam65c YES B[a]P_3 chr2 167820095 167820095 G T intronic Fam65c NA NA intronic Fam65c NA NA intronic ENSMUSG00000074577 NA NA 2qH3 NA NA chr2 167820095 GTTxCTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 231 0 0 43.718597 0.301587 0.02 1.045047 44 19 1213 514 60 60 0 0 GG 41.49522 138 0 3930 0 KEEP - Fam65c YES B[a]P_3 chr2 168559564 168559564 C G intronic Atp9a NA NA UTR5 Atp9a NA NA UTR5 ENSMUSG00000027546 NA NA 2qH3 NA NA chr2 168559564 AGGxGCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 252 0 0 133.78203 0.604938 0.02 1.066164 32 49 773 1340 60 60 0 0 CC 36.044218 120 0 2947 0 KEEP - Atp9a NO B[a]P_3 chr2 168581603 168581603 G A exonic Sall4 synonymous SNV NM_175303:c.C816T:p.A272A exonic Sall4 synonymous SNV uc008obf.1:c.C816T:p.A272A exonic ENSMUSG00000027547 synonymous SNV ENSMUST00000029061:c.C816T:p.A272A 2qH3 NA NA chr2 168581603 CACxGCA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 163 2 0 69.929678 0.451613 0.02 1.045375 34 28 814 751 60 60 0 0 GG 23.963454 80 0 2030 0 KEEP - Sall4 NO B[a]P_3 chr2 17918503 17918503 T A UTR5 H2afb1 NA NA UTR5 H2afb1 NA NA UTR5 ENSMUSG00000062651 NA NA 2qA3 "Score=0.924407;Name=No.80486,chrX:13788013" NA chr2 17918503 TGAxGCT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 245 0 0 90.265953 0.576271 0.02 1.071579 25 34 634 915 60 60 0 0 TT 45.997901 153 0 4124 0 KEEP - H2afb1 NO B[a]P_3 chr2 179933239 179933239 T A exonic Lama5 nonsynonymous SNV NM_001081171:c.A1985T:p.Y662F exonic Lama5 nonsynonymous SNV uc008oip.1:c.A1985T:p.Y662F exonic ENSMUSG00000015647 nonsynonymous SNV ENSMUST00000015791:c.A1985T:p.Y662F 2qH4 NA NA chr2 179933239 GTGxAGC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.734962 0.739671 0.993634 47 1 0 20.340911 0.28125 0.02 -0.280458 23 9 566 243 60 60 0 0 TT 3.608707 12 0 322 0 KEEP - Lama5 NO B[a]P_3 chr2 180409800 180409800 A C exonic Dido1 nonsynonymous SNV NM_175551:c.T1918G:p.S640A exonic Dido1 nonsynonymous SNV uc008ojr.1:c.T379G:p.S127A exonic ENSMUSG00000038914 nonsynonymous SNV ENSMUST00000037764:c.T298G:p.S100A 2qH4 NA NA chr2 180409800 CAGxCAT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.483081 0.490544 0.984784 49 0 0 37.788483 0.608696 0.02 -0.201646 9 14 236 378 60 60 0 0 AA 6.315846 21 0 573 0 KEEP - Dido1 NO B[a]P_3 chr2 180817093 180817093 G T exonic Kcnq2 nonsynonymous SNV NM_001003825:c.C1844A:p.T615K exonic Kcnq2 nonsynonymous SNV uc008okt.1:c.C1751A:p.T584K exonic ENSMUSG00000016346 nonsynonymous SNV ENSMUST00000049792:c.C1844A:p.T615K 2qH4 NA NA chr2 180817093 TCCxTTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 64 0 0 18.664751 0.347826 0.02 -0.201583 15 8 382 213 60 60 0 0 GG 9.618674 32 0 819 0 KEEP - Kcnq2 YES B[a]P_3 chr2 181384254 181384254 A T exonic Prpf6 nonsynonymous SNV NM_133701:c.A2156T:p.E719V exonic Prpf6 nonsynonymous SNV uc008omz.1:c.A2156T:p.E719V exonic ENSMUSG00000002455 nonsynonymous SNV ENSMUST00000002529:c.A2156T:p.E719V 2qH4 NA NA chr2 181384254 TTGxGGA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 25 0 0 11.844605 0.416667 0.02 -0.105204 7 5 187 130 60 60 0 0 AA 3.308932 11 0 311 0 KEEP + Prpf6 NO B[a]P_3 chr2 20211653 20211653 C A exonic Etl4 nonsynonymous SNV NM_001081006:c.C20A:p.P7H exonic Etl4 nonsynonymous SNV uc008imm.1:c.C20A:p.P7H exonic ENSMUSG00000036617 nonsynonymous SNV ENSMUST00000114627:c.C20A:p.P7H 2qA3 NA NA chr2 20211653 CACxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 103 0 0 34.159925 0.375 0.02 -0.350709 25 15 695 385 60 60 0 0 CC 15.340006 51 0 1423 0 KEEP + Etl4 YES B[a]P_3 chr2 20865000 20865000 C A intronic Arhgap21 NA NA intronic Arhgap21 NA NA UTR5 ENSMUSG00000036591 NA NA 2qA3 NA NA chr2 20865000 TGCxTAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 54 0 0 26.881995 1 0.02 -0.078883 0 9 0 226 0 60 0 0 CC 11.732747 39 0 1126 0 KEEP - Arhgap21 YES B[a]P_3 chr2 20865002 20865002 A G intronic Arhgap21 NA NA intronic Arhgap21 NA NA UTR5 ENSMUSG00000036591 NA NA 2qA3 NA NA chr2 20865002 CCTxGAG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 55 0 0 28.585955 1 0.02 -0.07891 0 9 0 243 0 60 0 0 AA 11.73048 39 0 1087 0 KEEP - Arhgap21 NO B[a]P_3 chr2 21748901 21748901 A G exonic Gpr158 nonsynonymous SNV NM_001004761:c.A3184G:p.K1062E exonic Gpr158 nonsynonymous SNV uc008inf.1:c.A3184G:p.K1062E exonic ENSMUSG00000045967 nonsynonymous SNV ENSMUST00000055946:c.A3184G:p.K1062E 2qA3 NA NA chr2 21748901 GACxAGA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 78 0 0 19.892773 0.310345 0.02 -0.262274 20 9 538 234 60 60 0 0 AA 12.031041 40 0 1104 0 KEEP + Gpr158 NO B[a]P_3 chr2 24149118 24149118 C T exonic Il1f10 synonymous SNV NM_153077:c.C288T:p.T96T exonic Il1f10 synonymous SNV uc008iou.1:c.C288T:p.T96T exonic ENSMUSG00000046845 synonymous SNV ENSMUST00000058056:c.C288T:p.T96T 2qA3 NA NA chr2 24149118 AACxACC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 158 0 0 67.932313 0.519231 0.02 1.141446 25 27 684 707 60 60 0 0 CC 24.665959 82 0 2310 0 KEEP + Il1f10 NO B[a]P_3 chr2 25149959 25149959 G T exonic Grin1 nonsynonymous SNV NM_008169:c.C2699A:p.T900K exonic Grin1 nonsynonymous SNV uc008irk.2:c.C2699A:p.T900K exonic ENSMUSG00000026959 nonsynonymous SNV ENSMUST00000028335:c.C2699A:p.T900K 2qA3 NA NA chr2 25149959 ACCxTGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 81 0 0 46.262438 0.514286 0.02 -0.306675 17 18 395 482 60 60 0 0 GG 9.783506 33 0 744 0 KEEP - Grin1 YES B[a]P_3 chr2 25220803 25220803 C A intronic Uap1l1 NA NA intronic Uap1l1 NA NA intronic ENSMUSG00000026956 NA NA 2qA3 NA NA chr2 25220803 CAAxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552881 0.552887 0.999988 60 0 0 55.022662 0.791667 0.02 -0.219194 5 19 132 513 60 60 0 0 CC 8.117601 27 0 707 0 KEEP - Uap1l1 YES B[a]P_3 chr2 25322909 25322909 G T intronic Ptgds NA NA intronic Ptgds NA NA intronic ENSMUSG00000015090 NA NA 2qA3 NA NA chr2 25322909 TTAxACA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 102 0 0 62.405559 0.5 0.02 0.930181 27 27 737 658 60 60 0 0 GG 12.634909 42 0 1205 0 KEEP - Ptgds YES B[a]P_3 chr2 25623378 25623378 C T intronic Lcn3 NA NA intronic Lcn3 NA NA intronic ENSMUSG00000026936 NA NA 2qA3 NA NA chr2 25623378 CTTxAGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999987 0.999987 1 212 2 0 113.969851 0.443396 0.02 2.265577 59 47 1652 1232 60 60 0 0 CC 27.667551 92 0 2631 0 KEEP + Lcn3 NO B[a]P_3 chr2 27037014 27037014 C A exonic Dbh nonsynonymous SNV NM_138942:c.C1598A:p.T533N exonic Dbh nonsynonymous SNV uc008ixe.1:c.C1598A:p.T533N exonic ENSMUSG00000000889 nonsynonymous SNV ENSMUST00000000910:c.C1598A:p.T533N 2qA3 NA NA chr2 27037014 GCAxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 156 2 0 47.054319 0.3 0.02 0.983799 49 21 1317 556 60 60 0 0 CC 20.150245 67 0 1831 0 KEEP + Dbh YES B[a]P_3 chr2 28690078 28690078 C A exonic Gtf3c4 synonymous SNV NM_172977:c.G1161T:p.V387V exonic Gtf3c4 synonymous SNV uc008ize.2:c.G1161T:p.V387V exonic ENSMUSG00000035666 synonymous SNV ENSMUST00000037117:c.G1161T:p.V387V 2qA3 NA NA chr2 28690078 TACxACT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 180 2 0 91.945457 0.493333 0.02 0.939939 38 37 1065 969 60 60 0 0 CC 24.066059 80 0 2291 0 KEEP - Gtf3c4 YES B[a]P_3 chr2 29108476 29108476 C A ncRNA_exonic 6530402F18Rik NA NA upstream mKIAA1857 NA NA ncRNA_exonic ENSMUSG00000079499 NA NA 2qB NA NA chr2 29108476 CACxATC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 165 0 0 82.285548 0.542373 0.02 1.062533 27 32 741 847 60 60 0 0 CC 21.957049 73 0 2047 0 KEEP - 6530402F18Rik YES B[a]P_3 chr2 30041715 30041715 G T exonic Ccbl1 nonsynonymous SNV NM_172404:c.C1119A:p.N373K exonic Ccbl1 nonsynonymous SNV uc008jbp.1:c.C1119A:p.N373K exonic ENSMUSG00000039648 nonsynonymous SNV ENSMUST00000113659:c.C969A:p.N323K 2qB NA NA chr2 30041715 CTTxTTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999987 0.999987 1 215 0 0 126.707031 0.471698 0.02 2.265283 56 50 1539 1347 60 60 0 1 GG 21.056497 70 0 1980 0 KEEP - Ccbl1 YES B[a]P_3 chr2 31242310 31242310 C G intergenic "Ncs1(dist=91319),Ass1(dist=83480)" NA NA intergenic "Ncs1(dist=91319),Hmcn2(dist=51272)" NA NA exonic ENSMUSG00000055632 nonsynonymous SNV ENSMUST00000113532:c.C4780G:p.Q1594E 2qB NA NA chr2 31242310 CTGxAGC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 73 0 0 53.606831 0.555556 0.02 -0.315474 16 20 427 548 60 60 0 0 CC 8.422185 28 0 792 0 KEEP NA Ncs1 NO B[a]P_3 chr2 31257256 31257256 C G intergenic "Ncs1(dist=106265),Ass1(dist=68534)" NA NA intergenic "Ncs1(dist=106265),Hmcn2(dist=36326)" NA NA exonic ENSMUSG00000055632 nonsynonymous SNV ENSMUST00000113532:c.C7281G:p.I2427M 2qB NA NA chr2 31257256 AATxAGC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 216 1 0 137.591958 0.555556 0.02 0.897225 40 50 1122 1406 60 60 0 0 CC 33.090429 110 0 3153 0 KEEP NA Ncs1 NO B[a]P_3 chr2 3137513 3137513 G C intronic Fam171a1 NA NA intronic Fam171a1 NA NA intronic ENSMUSG00000050530 NA NA 2qA1 NA NA chr2 3137513 TCTxCAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 51 0 0 17.51507 0.388889 0.02 -0.157844 11 7 309 194 60 60 0 0 GG 8.408291 28 0 767 0 KEEP + Fam171a1 NO B[a]P_3 chr2 31495740 31495740 G T exonic Prdm12 nonsynonymous SNV NM_001123362:c.G122T:p.W41L exonic Prdm12 nonsynonymous SNV uc012bto.1:c.G122T:p.W41L exonic ENSMUSG00000079466 nonsynonymous SNV ENSMUST00000113470:c.G122T:p.W41L 2qB NA NA chr2 31495740 GATxGCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 129 1 0 57.833353 0.428571 0.02 1.088831 32 24 899 630 60 60 0 0 GG 14.438598 48 0 1359 0 KEEP + Prdm12 YES B[a]P_3 chr2 31786167 31786167 C G exonic Lamc3 nonsynonymous SNV NM_011836:c.C3673G:p.Q1225E exonic Lamc3 nonsynonymous SNV uc008jef.1:c.C3673G:p.Q1225E exonic ENSMUSG00000026840 nonsynonymous SNV ENSMUST00000028187:c.C3673G:p.Q1225E 2qB NA NA chr2 31786167 GTGxAGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387356 0.387407 0.999869 51 0 0 6.493421 0.176471 0.02 -0.149006 14 3 369 85 60 60 0 0 CC 6.316735 21 0 596 0 KEEP + Lamc3 NO B[a]P_3 chr2 32237247 32237247 C G exonic 1110008P14Rik nonsynonymous SNV NM_198001:c.G44C:p.G15A exonic 1110008P14Rik nonsynonymous SNV uc008jfk.2:c.G44C:p.G15A exonic ENSMUSG00000039195 nonsynonymous SNV ENSMUST00000048792:c.G44C:p.G15A 2qB NA NA chr2 32237247 GTGxCCG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 207 2 1 59.79221 0.308642 0.02 0.985072 56 25 1516 696 60 60 0 0 CC 27.369456 91 0 2504 0 KEEP - 1110008P14Rik NO B[a]P_3 chr2 32767941 32767941 G A exonic Fam129b synonymous SNV NM_146119:c.G423A:p.G141G exonic Fam129b synonymous SNV uc008jhc.2:c.G423A:p.G141G exonic ENSMUSG00000026796 synonymous SNV ENSMUST00000028135:c.G423A:p.G141G 2qB NA NA chr2 32767941 AGGxACC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 221 0 0 19.673677 0.113402 0.02 0.746849 86 11 2380 293 60 60 0 0 GG 25.559774 85 0 2367 0 KEEP + Fam129b NO B[a]P_3 chr2 34559645 34559645 C A intronic Gapvd1 NA NA intronic Gapvd1 NA NA intronic ENSMUSG00000026867 NA NA 2qB NA NA chr2 34559645 GACxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423422 0.423478 0.999869 49 1 0 24.555578 0.47619 0.02 -0.184124 11 10 305 261 60 60 0 0 CC 6.316056 21 0 579 0 KEEP - Gapvd1 YES B[a]P_3 chr2 37256142 37256142 C A exonic Rc3h2 nonsynonymous SNV NM_001100591:c.G867T:p.M289I exonic Rc3h2 nonsynonymous SNV uc008jmq.1:c.G867T:p.M289I exonic ENSMUSG00000075376 nonsynonymous SNV ENSMUST00000100143:c.G867T:p.M289I 2qB NA NA chr2 37256142 TTCxATG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 79 1 0 22.234828 0.277778 0.02 -0.315666 26 10 723 267 60 60 0 0 CC 9.927672 33 0 952 0 KEEP - Rc3h2 YES B[a]P_3 chr2 37655928 37655928 A C exonic Dennd1a synonymous SNV NM_146122:c.T2679G:p.S893S exonic Dennd1a synonymous SNV uc008jni.2:c.T2463G:p.S821S exonic ENSMUSG00000035392 synonymous SNV ENSMUST00000040406:c.T2166G:p.S722S 2qB NA NA chr2 37655928 AGCxGAG A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999998 87 1 0 63.374986 0.604167 0.02 -0.420371 19 29 515 636 60 60 0 0 AA 10.227309 34 0 956 0 KEEP - Dennd1a NO B[a]P_3 chr2 38856699 38856699 C A exonic Wdr38 stopgain SNV NM_029687:c.C801A:p.C267X exonic Wdr38 stopgain SNV uc008jnx.2:c.C801A:p.C267X exonic ENSMUSG00000035295 stopgain SNV ENSMUST00000112872:c.C801A:p.C267X 2qB NA NA chr2 38856699 CTGxCTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 104 0 0 33.257781 0.348837 0.02 -0.376591 28 15 754 382 60 60 0 0 CC 15.018403 50 0 1359 0 KEEP + Wdr38 YES B[a]P_3 chr2 4556964 4556964 C A exonic Prpf18 synonymous SNV NM_026045:c.G630T:p.V210V exonic Prpf18 synonymous SNV uc008iex.1:c.G630T:p.V210V exonic ENSMUSG00000039449 synonymous SNV ENSMUST00000035721:c.G630T:p.V210V 2qA1 NA NA chr2 4556964 TTTxACG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 64 0 0 28.917489 0.611111 0.02 -0.157824 7 11 201 289 60 60 0 0 CC 10.830014 36 0 1035 0 KEEP - Prpf18 YES B[a]P_3 chr2 4556966 4556966 C A exonic Prpf18 nonsynonymous SNV NM_026045:c.G628T:p.V210L exonic Prpf18 nonsynonymous SNV uc008iex.1:c.G628T:p.V210L exonic ENSMUSG00000039449 nonsynonymous SNV ENSMUST00000035721:c.G628T:p.V210L 2qA1 NA NA chr2 4556966 TCAxGTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 1 62 0 0 30.125601 0.611111 0.02 -0.157765 7 11 164 301 60 60 0 0 CC 11.116615 37 0 914 0 KEEP - Prpf18 YES B[a]P_3 chr2 4572930 4572930 C A intronic Prpf18 NA NA intronic Prpf18 NA NA intronic ENSMUSG00000039449 NA NA 2qA1 NA NA chr2 4572930 CACxCTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 144 0 0 78.430213 0.666667 0.02 -0.394317 15 30 412 766 60 60 0 0 CC 23.759455 79 0 2177 0 KEEP - Prpf18 YES B[a]P_3 chr2 4902284 4902284 C T exonic Ucma nonsynonymous SNV NM_026754:c.C155T:p.A52V exonic Ucma nonsynonymous SNV uc008ife.2:c.C155T:p.A52V exonic ENSMUSG00000026668 nonsynonymous SNV ENSMUST00000027978:c.C155T:p.A52V 2qA1 NA NA chr2 4902284 CAGxGGA C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 53 0 0 12.060789 0.375 0.02 -0.140084 10 6 251 138 60 60 0 0 CC 6.853627 23 0 594 0 KEEP + Ucma NO B[a]P_3 chr2 57986229 57986229 C A exonic Cytip nonsynonymous SNV NM_139200:c.G989T:p.R330L exonic Cytip nonsynonymous SNV uc008jsi.1:c.G989T:p.R330L exonic ENSMUSG00000026832 nonsynonymous SNV ENSMUST00000028175:c.G989T:p.R330L 2qC1.1 NA NA chr2 57986229 TTCxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 129 0 0 79.256045 0.553571 0.02 1.10656 25 31 639 812 60 60 0 0 CC 18.633398 62 0 1590 0 KEEP - Cytip YES B[a]P_3 chr2 5844973 5844973 T A exonic Dhtkd1 nonsynonymous SNV NM_001081131:c.A932T:p.D311V exonic Dhtkd1 nonsynonymous SNV uc008iga.1:c.A932T:p.D311V exonic ENSMUSG00000025815 nonsynonymous SNV ENSMUST00000026924:c.A932T:p.D311V 2qA1 NA NA chr2 5844973 CCAxCTT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 98 0 0 71.257095 0.722222 0.02 -0.315562 10 26 251 681 60 60 0 0 TT 15.878652 53 0 1397 0 KEEP - Dhtkd1 NO B[a]P_3 chr2 59182989 59182989 G C exonic Pkp4 nonsynonymous SNV NM_026361:c.G2860C:p.A954P exonic Pkp4 nonsynonymous SNV uc008jtc.1:c.G2860C:p.A954P exonic ENSMUSG00000026991 nonsynonymous SNV ENSMUST00000112577:c.G1837C:p.A613P 2qC1.1 NA NA chr2 59182989 AAAxCTC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 56 0 0 13.163678 0.352941 0.02 -0.148907 11 6 288 151 60 60 0 0 GG 9.625241 32 0 893 0 KEEP + Pkp4 NO B[a]P_3 chr2 65602466 65602466 G C exonic Scn2a1 synonymous SNV NM_001099298:c.G5601C:p.L1867L exonic Scn2a1 synonymous SNV uc008jwo.2:c.G5601C:p.L1867L exonic ENSMUSG00000075318 synonymous SNV ENSMUST00000100067:c.G5601C:p.L1867L 2qC1.3 NA NA chr2 65602466 CCTxGGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 118 2 6 46.668471 0.428571 0.02 -0.429495 28 21 780 512 60 60 0 0 GG 15.642802 52 0 1488 0 KEEP + Scn2a1 NO B[a]P_3 chr2 66188933 66188933 G T intronic Scn1a NA NA exonic Scn1a nonsynonymous SNV uc008jxa.1:c.C302A:p.T101K intronic ENSMUSG00000064329 NA NA 2qC1.3 NA NA chr2 66188933 AATxTAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760877 0.760887 0.999988 66 0 0 47.20623 0.545455 0.02 -0.289359 15 18 419 485 60 60 0 0 GG 8.122556 27 0 778 0 KEEP - Scn1a YES B[a]P_3 chr2 66321730 66321730 C G exonic Scn9a synonymous SNV NM_018852:c.G5673C:p.R1891R exonic Scn9a synonymous SNV uc008jxd.1:c.G5673C:p.R1891R exonic ENSMUSG00000075316 synonymous SNV ENSMUST00000112354:c.G5667C:p.R1889R 2qC1.3 NA NA chr2 66321730 GTAxCGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641339 0.641347 0.999988 61 0 0 45.953101 0.607143 0.02 -0.245473 11 17 300 460 60 60 0 0 CC 8.11763 27 0 730 0 KEEP - Scn9a NO B[a]P_3 chr2 68546998 68546998 G C intronic 4932414N04Rik NA NA intronic 4932414N04Rik NA NA intronic ENSMUSG00000048204 NA NA 2qC2 NA NA chr2 68546998 TGTxAGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.94174 0.941741 0.999999 98 0 0 88.289147 0.659574 0.02 -0.412149 16 31 448 866 60 60 0 0 GG 10.52904 35 0 1006 0 KEEP + 4932414N04Rik NO B[a]P_3 chr2 68582349 68582349 G T exonic 4932414N04Rik nonsynonymous SNV NM_183113:c.G1865T:p.R622L exonic 4932414N04Rik nonsynonymous SNV uc008jxr.1:c.G1865T:p.R622L exonic ENSMUSG00000048204 nonsynonymous SNV ENSMUST00000055930:c.G1865T:p.R622L 2qC2 NA NA chr2 68582349 CACxCAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 116 0 0 71.546029 0.55102 0.02 -0.429434 22 27 522 733 60 60 0 0 GG 16.224866 54 0 1341 0 KEEP + 4932414N04Rik YES B[a]P_3 chr2 69305294 69305294 T A exonic Lrp2 nonsynonymous SNV NM_001081088:c.A9379T:p.N3127Y exonic Lrp2 nonsynonymous SNV uc008jyc.1:c.A9379T:p.N3127Y exonic ENSMUSG00000027070 nonsynonymous SNV ENSMUST00000080953:c.A9379T:p.N3127Y 2qC2 NA NA chr2 69305294 AGTxGTG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.55282 0.552887 0.999879 52 0 0 24.262358 0.4 0.02 -0.219183 15 10 399 268 60 60 0 0 TT 6.61643 22 0 597 0 KEEP - Lrp2 NO B[a]P_3 chr2 69343381 69343381 C A exonic Lrp2 nonsynonymous SNV NM_001081088:c.G4054T:p.D1352Y exonic Lrp2 nonsynonymous SNV uc008jyc.1:c.G4054T:p.D1352Y exonic ENSMUSG00000027070 nonsynonymous SNV ENSMUST00000080953:c.G4054T:p.D1352Y 2qC2 NA NA chr2 69343381 TGTxTTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 131 0 0 59.186064 0.464286 0.02 0.816596 30 26 852 636 60 60 0 0 CC 17.138471 57 0 1631 0 KEEP - Lrp2 YES B[a]P_3 chr2 71065922 71065922 G T intronic Dync1i2 NA NA intronic "Dncic2,Dync1i2" NA NA intronic ENSMUSG00000027012 NA NA 2qC2 NA NA chr2 71065922 CATxTTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 93 1 0 66.321628 0.581395 0.02 -0.377029 18 25 496 671 60 60 0 0 GG 10.527037 35 0 970 0 KEEP + Dync1i2 YES B[a]P_3 chr2 73273069 73273069 C A exonic Wipf1 nonsynonymous SNV NM_153138:c.G1246T:p.G416W exonic Wipf1 nonsynonymous SNV uc008kcu.1:c.G1246T:p.G416W exonic ENSMUSG00000075284 nonsynonymous SNV ENSMUST00000094681:c.G1246T:p.G416W 2qC3 NA NA chr2 73273069 CCCxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 159 0 0 107.040193 0.591549 0.02 0.906069 29 42 809 1080 60 60 0 0 CC 17.446939 58 0 1654 0 KEEP - Wipf1 YES B[a]P_3 chr2 76176652 76176652 G T exonic Pde11a nonsynonymous SNV NM_001081033:c.C13A:p.R5S exonic Pde11a nonsynonymous SNV uc008kex.1:c.C13A:p.R5S exonic ENSMUSG00000075270 nonsynonymous SNV ENSMUST00000099992:c.C13A:p.R5S 2qC3 NA NA chr2 76176652 GGCxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.610258 0.612407 0.99649 45 0 0 45.0725 0.62963 0.02 -0.236706 10 17 271 447 60 60 0 0 GG 4.510955 15 0 410 0 KEEP - Pde11a YES B[a]P_3 chr2 76544514 76544514 G T exonic Ttn nonsynonymous SNV NM_028004:c.C80042A:p.A26681E exonic Ttn nonsynonymous SNV uc008kfm.1:c.C707A:p.A236E exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.C80042A:p.A26681E 2qC3 NA NA chr2 76544514 GACxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 81 0 0 31.10212 0.5 0.02 -0.21034 12 12 293 326 60 60 0 0 GG 12.62114 42 0 1060 0 KEEP - Ttn YES B[a]P_3 chr2 76581214 76581214 T C exonic Ttn synonymous SNV NM_028004:c.A52410G:p.S17470S exonic Ttn synonymous SNV uc008kfo.1:c.A52410G:p.S17470S exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000011934:c.A52410G:p.S17470S 2qC3 NA NA chr2 76581214 AACxGAG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 149 0 0 63.736068 0.42029 0.02 1.082031 40 29 1042 703 60 60 0 0 TT 21.049069 70 0 1905 0 KEEP - Ttn NO B[a]P_3 chr2 76590974 76590974 C G exonic Ttn nonsynonymous SNV NM_028004:c.G42650C:p.G14217A exonic Ttn nonsynonymous SNV uc008kfo.1:c.G42650C:p.G14217A exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.G42650C:p.G14217A 2qC3 NA NA chr2 76590974 ACAxCTG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 66 0 0 51.31122 0.692308 0.02 -0.227984 8 18 220 497 60 60 0 0 CC 9.925249 33 0 908 0 KEEP - Ttn NO B[a]P_3 chr2 76616502 76616502 G T exonic Ttn synonymous SNV NM_028004:c.C28245A:p.I9415I exonic Ttn synonymous SNV uc008kfo.1:c.C28245A:p.I9415I exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000011934:c.C28245A:p.I9415I 2qC3 NA NA chr2 76616502 GTCxATG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 73 1 0 31.730992 0.388889 0.02 -0.315488 22 14 570 355 60 60 0 0 GG 8.720442 29 0 795 0 KEEP - Ttn YES B[a]P_3 chr2 76663570 76663570 C T intronic Ttn NA NA intronic Ttn NA NA exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000070199:c.G5077A:p.E1693K 2qC3 NA NA chr2 76663570 TTTxTGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 290 4 0 164.42942 0.533898 0.02 2.159998 55 63 1555 1698 60 60 0 0 CC 33.392157 111 0 3195 0 KEEP - Ttn NO B[a]P_3 chr2 76752471 76752471 G T intronic Ttn NA NA intronic Ttn NA NA exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000099980:c.C16290A:p.P5430P 2qC3 NA NA chr2 76752471 TAAxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 113 0 0 47.465899 0.454545 0.02 -0.385773 24 20 678 511 60 60 0 0 GG 16.545365 55 0 1572 0 KEEP - Ttn YES B[a]P_3 chr2 76755337 76755337 G T intronic Ttn NA NA intronic Ttn NA NA exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000099980:c.C13424A:p.S4475Y 2qC3 NA NA chr2 76755337 GAGxAAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 89 0 0 49.079741 0.477273 0.02 -0.385738 23 21 643 523 60 60 0 0 GG 11.421331 38 0 1058 0 KEEP - Ttn YES B[a]P_3 chr2 76970289 76970289 T A exonic Ccdc141 stopgain SNV NM_001025576:c.A367T:p.R123X exonic Ccdc141 stopgain SNV uc008kfv.2:c.A367T:p.R123X exonic ENSMUSG00000044033 stopgain SNV ENSMUST00000028406:c.A367T:p.R123X 2qC3 NA NA chr2 76970289 TTCxTCT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 69 0 0 38.339695 0.6 0.02 -0.219165 10 15 271 385 60 60 0 0 TT 9.624885 32 0 889 0 KEEP - Ccdc141 NO B[a]P_3 chr2 78353207 78353207 A C intergenic "Gm14461(dist=210820),Ube2e3(dist=355997)" NA NA intergenic "Gm14461(dist=210820),Ube2e3(dist=355997)" NA NA ncRNA_exonic ENSMUSG00000082701 NA NA 2qC3 "Score=0.977605;Name=No.28566,chr12:67384365" NA chr2 78353207 CGGxTGA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 73 1 0 17.839828 0.216216 0.02 -0.323788 29 8 715 224 60 60 0 0 AA 8.721712 29 0 789 0 KEEP NA Gm14461 NO B[a]P_3 chr2 79119251 79119251 G A exonic Itga4 synonymous SNV NM_010576:c.G636A:p.V212V exonic Itga4 synonymous SNV uc008kgq.1:c.G636A:p.V212V exonic ENSMUSG00000027009 synonymous SNV ENSMUST00000099972:c.G636A:p.V212V 2qC3 NA NA chr2 79119251 TGTxATG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.579219 0.58293 0.993634 42 1 0 31.271413 0.5 0.02 -0.227852 13 13 354 329 60 60 0 0 GG 3.610208 12 0 349 0 KEEP + Itga4 NO B[a]P_3 chr2 79181576 79181576 G T intronic Cerkl NA NA intronic Cerkl NA NA intronic ENSMUSG00000075256 NA NA 2qC3 NA NA chr2 79181576 AGTxCAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 121 1 0 68.517723 0.565217 0.02 -0.403325 20 26 546 698 60 60 0 0 GG 19.853162 66 0 1868 0 KEEP - Cerkl YES B[a]P_3 chr2 83500211 83500211 A G intronic Zc3h15 NA NA UTR5 Zc3h15 NA NA intronic ENSMUSG00000027091 NA NA 2qD NA NA chr2 83500211 TCTxTAG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522098 0.522161 0.999879 52 0 0 19.884773 0.333333 0.02 -0.210379 16 8 396 227 60 60 0 0 AA 6.614476 22 0 574 0 KEEP + Zc3h15 NO B[a]P_3 chr2 84864510 84864510 A T intronic P2rx3 NA NA intronic P2rx3 NA NA intronic ENSMUSG00000027071 NA NA 2qD NA NA chr2 84864510 GCCxGTC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 164 1 0 111.183805 0.530864 0.02 0.887218 38 43 1015 1150 60 60 0 0 AA 17.746255 59 0 1638 0 KEEP - P2rx3 NO B[a]P_3 chr2 85171314 85171314 G C exonic Olfr987 nonsynonymous SNV NM_001011785:c.C740G:p.A247G exonic Olfr987 nonsynonymous SNV uc008kkd.1:c.C740G:p.A247G exonic ENSMUSG00000075223 nonsynonymous SNV ENSMUST00000099929:c.C740G:p.A247G 2qD "Score=0.925932;Name=No.75220,chr2:85190438" NA chr2 85171314 ACTxCAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 207 1 0 101.045699 0.5 0.02 1.127144 38 38 1042 1058 60 60 0 0 GG 32.480404 108 0 3061 0 KEEP - Olfr987 NO B[a]P_3 chr2 85792034 85792034 C A exonic Olfr1028 synonymous SNV NM_001011774:c.C813A:p.S271S exonic Olfr1028 synonymous SNV uc008klf.1:c.C813A:p.S271S exonic ENSMUSG00000057207 synonymous SNV ENSMUST00000080698:c.C813A:p.S271S 2qD "Score=0.96687;Name=No.75229,chr2:85815389" NA chr2 85792034 ATCxAAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 204 0 0 133.953216 0.554348 0.02 0.781889 41 51 1149 1371 60 60 0 0 CC 27.675666 92 0 2628 0 KEEP + Olfr1028 YES B[a]P_3 chr2 86038522 86038522 G T exonic Olfr1045 nonsynonymous SNV NM_147017:c.C386A:p.P129Q exonic Olfr1045 nonsynonymous SNV uc008klv.1:c.C386A:p.P129Q exonic ENSMUSG00000075198 nonsynonymous SNV ENSMUST00000099904:c.C386A:p.P129Q 2qD NA NA chr2 86038522 AGTxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 168 0 0 70.255891 0.402778 0.02 0.957443 43 29 1168 775 60 60 0 0 GG 24.062929 80 0 2250 0 KEEP - Olfr1045 YES B[a]P_3 chr2 86038523 86038523 G T exonic Olfr1045 nonsynonymous SNV NM_147017:c.C385A:p.P129T exonic Olfr1045 nonsynonymous SNV uc008klv.1:c.C385A:p.P129T exonic ENSMUSG00000075198 nonsynonymous SNV ENSMUST00000099904:c.C385A:p.P129T 2qD NA NA chr2 86038523 GTGxGTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 169 0 0 70.330949 0.39726 0.02 0.948534 44 29 1208 778 60 60 0 0 GG 24.05627 80 0 2203 0 KEEP - Olfr1045 YES B[a]P_3 chr2 86116513 86116513 C A exonic Olfr1051 nonsynonymous SNV NM_207562:c.G130T:p.G44C exonic Olfr1051 nonsynonymous SNV uc008kma.1:c.G130T:p.G44C exonic ENSMUSG00000075193 nonsynonymous SNV ENSMUST00000099898:c.G130T:p.G44C 2qD "Score=0.927383;Name=No.75237,chr2:86086493" NA chr2 86116513 TGCxGAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 166 0 11 27.600974 0.220339 0.02 1.080374 46 13 1122 349 60 60 0 0 CC 26.426653 88 0 2200 0 KEEP - Olfr1051 YES B[a]P_3 chr2 86254067 86254067 G A exonic Olfr1061 synonymous SNV NM_207134:c.C141T:p.I47I exonic Olfr1061 synonymous SNV uc008kmh.1:c.C141T:p.I47I exonic ENSMUSG00000075185 synonymous SNV ENSMUST00000099889:c.C141T:p.I47I 2qD "Score=0.939749;Name=No.75239,chr2:86293464" NA chr2 86254067 AAGxATT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 155 0 0 73.844477 0.428571 0.02 0.98356 40 30 1114 803 60 60 0 0 GG 23.162565 77 0 2184 0 KEEP - Olfr1061 NO B[a]P_3 chr2 86626533 86626533 G T exonic Olfr1093 synonymous SNV NM_146366:c.G645T:p.V215V exonic Olfr1093 synonymous SNV uc008kmx.1:c.G645T:p.V215V exonic ENSMUSG00000047969 synonymous SNV ENSMUST00000055273:c.G645T:p.V215V 2qD NA NA chr2 86626533 GGTxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 141 0 0 80.501744 0.484848 0.02 1.018665 34 32 936 851 60 60 0 1 GG 18.349332 61 0 1723 0 KEEP + Olfr1093 YES B[a]P_3 chr2 87623272 87623272 A T exonic Olfr152 nonsynonymous SNV NM_146646:c.A580T:p.T194S exonic Olfr152 nonsynonymous SNV uc008koq.1:c.A580T:p.T194S exonic ENSMUSG00000068816 nonsynonymous SNV ENSMUST00000090709:c.A580T:p.T194S 2qD NA NA chr2 87623272 TGTxCGG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 144 0 0 56.517811 0.433962 0.02 1.132762 30 23 755 613 60 60 0 0 AA 22.549767 75 0 1982 0 KEEP + Olfr152 NO B[a]P_3 chr2 90540605 90540605 G T exonic Nup160 nonsynonymous SNV NM_021512:c.G1449T:p.Q483H exonic Nup160 nonsynonymous SNV uc008ksy.1:c.G1449T:p.Q483H exonic ENSMUSG00000051329 nonsynonymous SNV ENSMUST00000057481:c.G1449T:p.Q483H 2qE1 NA NA chr2 90540605 CCAxGAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58286 0.58293 0.999879 54 0 0 25.350272 0.423077 0.02 -0.227953 15 11 422 278 60 60 0 0 GG 6.617997 22 0 625 0 KEEP + Nup160 YES B[a]P_3 chr2 90883386 90883386 C G exonic Rapsn synonymous SNV NM_009023:c.C879G:p.A293A exonic Rapsn synonymous SNV uc012bzc.1:c.C720G:p.A240A exonic ENSMUSG00000002104 synonymous SNV ENSMUST00000111446:c.C720G:p.A240A 2qE1 NA NA chr2 90883386 GGCxAAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 130 0 0 60.045495 0.472727 0.02 1.213304 29 26 804 642 60 60 0 0 CC 16.835779 56 0 1575 0 KEEP + Rapsn NO B[a]P_3 chr2 93508553 93508553 T A exonic Alx4 nonsynonymous SNV NM_007442:c.T472A:p.S158T exonic Alx4 nonsynonymous SNV uc008lgd.2:c.T472A:p.S158T exonic ENSMUSG00000040310 nonsynonymous SNV ENSMUST00000042078:c.T472A:p.S158T 2qE1 NA NA chr2 93508553 GACxCTG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 122 0 0 46.141458 0.44186 0.02 -0.377003 24 19 652 499 60 60 0 0 TT 17.7467 59 0 1649 0 KEEP + Alx4 NO B[a]P_3 chr3 101816601 101816601 G T exonic Nhlh2 nonsynonymous SNV NM_178777:c.G25T:p.A9S exonic Nhlh2 nonsynonymous SNV uc008qro.2:c.G25T:p.A9S exonic ENSMUSG00000048540 nonsynonymous SNV ENSMUST00000066187:c.G25T:p.A9S 3qF2.2 NA NA chr3 101816601 GCCxCCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 65 0 0 70.07771 1 0.02 -0.192897 0 22 0 596 0 60 0 0 GG 9.615744 32 0 819 0 KEEP + Nhlh2 YES B[a]P_3 chr3 10435434 10435434 C A intronic Snx16 NA NA intronic Snx16 NA NA intronic ENSMUSG00000027534 NA NA 3qA1 NA NA chr3 10435434 GGTxTAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 67 2 0 29.387563 0.571429 0.02 -0.18409 9 12 250 299 60 60 0 0 CC 10.828813 36 0 1023 0 KEEP - Snx16 YES B[a]P_3 chr3 105822027 105822027 C A intergenic "Pifo(dist=4463),Chia(dist=94273)" NA NA intronic Bclp2 NA NA intronic ENSMUSG00000043873 NA NA 3qF2.2 NA NA chr3 105822027 ATAxAGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162445 0.162467 0.999863 39 0 0 41.09085 1 0.02 -0.113981 0 13 0 349 0 60 0 0 CC 4.787082 19 1 526 8 KEEP NA Pifo YES B[a]P_3 chr3 106625269 106625269 C G exonic Olfr266 synonymous SNV NM_146489:c.G207C:p.L69L exonic Olfr266 synonymous SNV uc008qwn.1:c.G207C:p.L69L exonic ENSMUSG00000043529 synonymous SNV ENSMUST00000059486:c.G207C:p.L69L 3qF2.3 NA NA chr3 106625269 GGAxAGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 73 0 0 28.554505 0.423077 0.02 -0.227995 15 11 415 310 60 60 0 0 CC 11.130323 37 0 1055 0 KEEP - Olfr266 NO B[a]P_3 chr3 107242398 107242398 G C intronic Kcnc4 NA NA intronic Kcnc4 NA NA intronic ENSMUSG00000027895 NA NA 3qF2.3 NA NA chr3 107242398 CTGxCGG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 91 0 0 22.652612 0.282051 0.02 -0.340604 28 11 771 275 60 60 0 0 GG 11.730287 39 0 1085 0 KEEP - Kcnc4 NO B[a]P_3 chr3 107423013 107423013 T A exonic Strip1 nonsynonymous SNV NM_153563:c.A1361T:p.N454I exonic Fam40a nonsynonymous SNV uc008qxg.2:c.A1361T:p.N454I exonic ENSMUSG00000014601 nonsynonymous SNV ENSMUST00000064759:c.A1361T:p.N454I 3qF2.3 NA NA chr3 107423013 GTGxTGG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 174 0 0 97.12036 0.644068 0.02 0.974085 21 38 549 957 60 60 0 0 TT 26.766536 89 0 2432 0 KEEP - Strip1 NO B[a]P_3 chr3 122783149 122783149 C G exonic Synpo2 nonsynonymous SNV NM_080451:c.G3262C:p.G1088R exonic Synpo2 nonsynonymous SNV uc012cxa.1:c.G3262C:p.G1088R exonic ENSMUSG00000050315 nonsynonymous SNV ENSMUST00000106426:c.G3262C:p.G1088R 3qG1 NA NA chr3 122783149 TTCxAGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 76 0 0 45.851362 0.486486 0.02 -0.324316 19 18 520 484 60 60 0 0 CC 9.625942 32 0 913 0 KEEP - Synpo2 NO B[a]P_3 chr3 131840857 131840857 C G exonic Dkk2 nonsynonymous SNV NM_020265:c.C553G:p.R185G exonic Dkk2 nonsynonymous SNV uc008rjw.2:c.C553G:p.R185G exonic ENSMUSG00000028031 nonsynonymous SNV ENSMUST00000029665:c.C553G:p.R185G 3qG3 NA NA chr3 131840857 CTAxGGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 84 0 0 124.20083 1 0.02 -0.333206 0 38 0 1061 0 60 0 0 CC 11.418256 38 0 947 0 KEEP + Dkk2 NO B[a]P_3 chr3 135390390 135390390 G A intergenic "Nfkb1(dist=35879),Slc39a8(dist=98065)" NA NA intergenic "Nfkb1(dist=35879),Slc39a8(dist=98065)" NA NA exonic ENSMUSG00000045520 nonsynonymous SNV ENSMUST00000062127:c.G47A:p.R16H 3qG3 NA NA chr3 135390390 TGCxCAC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 51 0 0 11.342815 0.333333 0.02 -0.13135 10 5 214 131 60 60 0 0 GG 8.411304 28 0 680 0 KEEP NA Nfkb1 NO B[a]P_3 chr3 142300396 142300396 T G exonic Gbp2 nonsynonymous SNV NM_010260:c.T1709G:p.L570R exonic Gbp2 nonsynonymous SNV uc008roy.1:c.T1709G:p.L570R exonic ENSMUSG00000028270 nonsynonymous SNV ENSMUST00000165774:c.T1709G:p.L570R 3qH1 NA NA chr3 142300396 AACxTAT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 87 0 0 14.5634 0.269231 0.02 -0.227947 19 7 521 178 60 60 0 0 TT 14.136599 47 0 1316 0 KEEP + Gbp2 NO B[a]P_3 chr3 151170333 151170333 C A exonic Eltd1 nonsynonymous SNV NM_133222:c.C1045A:p.L349I exonic Eltd1 nonsynonymous SNV uc008rsj.2:c.C1045A:p.L349I exonic ENSMUSG00000039167 nonsynonymous SNV ENSMUST00000046977:c.C1045A:p.L349I 3qH3 NA NA chr3 151170333 TTCxTCT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 131 0 0 137.143221 0.978261 0.02 -0.403267 1 45 27 1178 60 60 0 0 CC 19.853318 66 0 1863 0 KEEP + Eltd1 YES B[a]P_3 chr3 157823687 157823687 G T exonic Lrrc7 nonsynonymous SNV NM_001081358:c.C3380A:p.S1127Y exonic Lrrc7 nonsynonymous SNV uc008rvw.1:c.C3380A:p.S1127Y exonic ENSMUSG00000028176 nonsynonymous SNV ENSMUST00000029826:c.C3365A:p.S1122Y 3qH4 NA NA chr3 157823687 GTGxAGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73964 0.739671 0.999957 65 2 0 93.303055 1 0.02 -0.280321 0 32 0 781 0 60 0 0 GG 7.821033 26 0 737 0 KEEP - Lrrc7 YES B[a]P_3 chr3 28553124 28553124 T G exonic Tnik nonsynonymous SNV NM_001163008:c.T3238G:p.W1080G exonic Tnik nonsynonymous SNV uc012cod.1:c.T3238G:p.W1080G exonic ENSMUSG00000027692 nonsynonymous SNV ENSMUST00000161964:c.T3073G:p.W1025G 3qA3 NA NA chr3 28553124 TCAxGGT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 87 0 0 56.544464 0.625 0.02 -0.280583 12 20 314 562 60 60 0 0 TT 12.320951 41 0 1093 0 KEEP + Tnik NO B[a]P_3 chr3 30498642 30498642 C A exonic Actrt3 nonsynonymous SNV NM_029690:c.G130T:p.D44Y exonic Arpm1 nonsynonymous SNV uc008ouw.1:c.G130T:p.D44Y exonic ENSMUSG00000037737 nonsynonymous SNV ENSMUST00000047630:c.G130T:p.D44Y 3qA3 NA NA chr3 30498642 TGTxCGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 144 0 0 89.558177 0.648148 0.02 1.026628 19 35 531 881 60 60 0 0 CC 21.055881 70 0 1977 0 KEEP - Actrt3 YES B[a]P_3 chr3 30498760 30498760 G T exonic Actrt3 stopgain SNV NM_029690:c.C12A:p.Y4X exonic Arpm1 stopgain SNV uc008ouw.1:c.C12A:p.Y4X exonic ENSMUSG00000037737 stopgain SNV ENSMUST00000047630:c.C12A:p.Y4X 3qA3 NA NA chr3 30498760 CTGxTAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 128 0 0 44.252715 0.351852 0.02 1.017768 35 19 959 504 60 60 0 0 GG 15.916121 53 0 1403 0 KEEP - Actrt3 YES B[a]P_3 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851974 0.851984 0.999988 73 2 0 10.94781 0.162162 0.02 -0.333176 31 6 848 152 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO B[a]P_3 chr3 36078879 36078879 G C exonic Qrfpr nonsynonymous SNV NM_198192:c.C1234G:p.R412G exonic Qrfpr nonsynonymous SNV uc008ozh.1:c.C1234G:p.R412G exonic ENSMUSG00000058400 nonsynonymous SNV ENSMUST00000091227:c.C1234G:p.R412G 3qB NA NA chr3 36078879 GTCxCTT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 209 0 0 66.493815 0.288462 0.02 2.275016 74 30 1738 793 60 60 0 0 GG 26.722439 89 0 2059 0 KEEP - Qrfpr NO B[a]P_3 chr3 36549030 36549030 C G exonic Trpc3 nonsynonymous SNV NM_019510:c.G1699C:p.V567L exonic Trpc3 nonsynonymous SNV uc012cow.1:c.G1477C:p.V493L exonic ENSMUSG00000027716 nonsynonymous SNV ENSMUST00000029271:c.G1699C:p.V567L 3qB NA NA chr3 36549030 GCAxGTG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 128 0 0 15.421317 0.108108 0.02 1.046546 66 8 1717 226 60 60 0 0 CC 13.220389 44 0 1149 0 KEEP - Trpc3 NO B[a]P_3 chr3 51054201 51054201 A G exonic Ccrn4l nonsynonymous SNV NM_009834:c.A1037G:p.Y346C exonic Ccrn4l nonsynonymous SNV uc008pdn.2:c.A845G:p.Y282C exonic ENSMUSG00000023087 nonsynonymous SNV ENSMUST00000023849:c.A1037G:p.Y346C 3qC NA NA chr3 51054201 CCTxCAA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 81 0 0 26.386808 0.366667 0.02 -0.262972 19 11 478 297 60 60 0 0 AA 10.821763 36 0 940 0 KEEP + Ccrn4l NO B[a]P_3 chr3 52417372 52417372 C A intergenic "Foxo1(dist=263341),Gm2447(dist=126274)" NA NA intergenic "AK040671(dist=63231),AK040707(dist=126274)" NA NA exonic ENSMUSG00000070490 nonsynonymous SNV ENSMUST00000076317:c.C616A:p.P206T 3qC "Score=0.990446;Name=No.82971,chr6:83824192" NA chr3 52417372 ATCxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 283 4 137 104.563673 0.972222 0.02 -0.315447 1 35 28 899 9 29 0 0 CC 51.134971 170 0 4774 0 KEEP NA Foxo1 YES B[a]P_3 chr3 62407762 62407762 G T exonic Gpr149 nonsynonymous SNV NM_177346:c.C737A:p.A246E exonic Gpr149 nonsynonymous SNV uc008pjo.1:c.C737A:p.A246E exonic ENSMUSG00000043441 nonsynonymous SNV ENSMUST00000058535:c.C737A:p.A246E 3qE1 NA NA chr3 62407762 CCCxCAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 53 0 0 55.575692 0.947368 0.02 -0.166594 1 18 28 487 60 60 0 0 GG 8.415171 28 0 713 0 KEEP - Gpr149 YES B[a]P_3 chr3 72704437 72704437 A C intronic Sis NA NA intronic Sis NA NA intronic ENSMUSG00000027790 NA NA 3qE3 NA NA chr3 72704437 AGAxAAA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 92 2 0 71.2953 0.675676 0.02 -0.324432 12 25 321 695 60 60 0 0 AA 12.934528 43 0 1207 0 KEEP - Sis NO B[a]P_3 chr3 87180398 87180398 C G UTR5 Fcrl1 NA NA UTR5 Fcrl1 NA NA UTR5 ENSMUSG00000059994 NA NA 3qF1 NA NA chr3 87180398 TACxATC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 87 2 0 88.757104 1 0.02 -0.262832 0 30 0 745 0 60 0 0 CC 12.930637 43 0 1208 0 KEEP + Fcrl1 NO B[a]P_3 chr3 87736122 87736122 C G exonic Isg20l2 nonsynonymous SNV NM_177663:c.C717G:p.N239K exonic Isg20l2 nonsynonymous SNV uc008ptj.1:c.C717G:p.N239K exonic ENSMUSG00000048039 nonsynonymous SNV ENSMUST00000055984:c.C717G:p.N239K 3qF1 "Score=0.941803;Name=No.83098,chr6:128925684" NA chr3 87736122 CAAxTAC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 99 0 0 75.647851 0.58 0.02 -0.438389 21 29 589 766 60 70 0 0 CC 12.933233 43 0 1207 0 KEEP + Isg20l2 NO B[a]P_3 chr3 87779743 87779743 A T exonic Nes synonymous SNV NM_016701:c.A1386T:p.P462P exonic Nes synonymous SNV uc008ptm.1:c.A1386T:p.P462P exonic ENSMUSG00000004891 synonymous SNV ENSMUST00000090973:c.A1386T:p.P462P 3qF1 NA NA chr3 87779743 CCCxCCC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 130 1 0 143.117891 0.978723 0.02 -0.412062 1 46 26 1233 60 60 0 0 AA 18.937029 63 0 1648 0 KEEP + Nes NO B[a]P_3 chr3 88438417 88438417 G T exonic Arhgef2 nonsynonymous SNV NM_001198912:c.G732T:p.Q244H exonic "Arhgef2,mKIAA0651" nonsynonymous SNV uc008pwb.2:c.G192T:p.Q64H exonic ENSMUSG00000028059 nonsynonymous SNV ENSMUST00000029694:c.G813T:p.Q271H 3qF1 NA NA chr3 88438417 GCAxATG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 83 0 0 80.845911 1 0.02 -0.236648 0 27 0 680 0 60 0 0 GG 13.537696 45 0 1297 0 KEEP + Arhgef2 YES B[a]P_3 chr3 89021623 89021623 G T exonic Thbs3 nonsynonymous SNV NM_013691:c.G303T:p.Q101H exonic Thbs3 nonsynonymous SNV uc008pyg.2:c.G303T:p.Q101H exonic ENSMUSG00000028047 nonsynonymous SNV ENSMUST00000142051:c.G96T:p.Q32H 3qF1 NA NA chr3 89021623 CCAxCGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 36 0 0 41.860444 1 0.02 -0.122704 0 14 0 352 0 60 0 0 GG 5.114076 17 0 488 0 KEEP + Thbs3 YES B[a]P_3 chr3 89022714 89022714 T G intronic Thbs3 NA NA intronic Thbs3 NA NA intronic "ENSMUSG00000028047,ENSMUSG00000064068" NA NA 3qF1 NA NA chr3 89022714 CTCxTCT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 166 0 0 147.350574 0.947368 0.02 1.089362 3 54 82 1268 60 60 0 0 TT 26.159457 87 0 2397 0 KEEP + Thbs3 NO B[a]P_3 chr3 92628265 92628265 G T exonic Kprp nonsynonymous SNV NM_028629:c.C1399A:p.R467S exonic Kprp nonsynonymous SNV uc008qes.1:c.C1399A:p.R467S exonic ENSMUSG00000059832 nonsynonymous SNV ENSMUST00000072363:c.C1399A:p.R467S 3qF1 NA NA chr3 92628265 GACxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 540 2 0 53.423029 0.338028 0.02 3.180144 47 24 1228 617 60 60 0 0 GG 87.625269 292 0 7417 0 KEEP - Kprp YES B[a]P_3 chr3 92629373 92629373 C A exonic Kprp nonsynonymous SNV NM_028629:c.G291T:p.K97N exonic Kprp nonsynonymous SNV uc008qes.1:c.G291T:p.K97N exonic ENSMUSG00000059832 nonsynonymous SNV ENSMUST00000072363:c.G291T:p.K97N 3qF1 NA NA chr3 92629373 GGTxTTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 62 0 0 10.357838 0.217391 0.02 -0.201679 18 5 506 132 60 60 0 0 CC 9.927512 33 0 948 0 KEEP - Kprp YES B[a]P_3 chr3 92629374 92629374 T G exonic Kprp nonsynonymous SNV NM_028629:c.A290C:p.K97T exonic Kprp nonsynonymous SNV uc008qes.1:c.A290C:p.K97T exonic ENSMUSG00000059832 nonsynonymous SNV ENSMUST00000072363:c.A290C:p.K97T 3qF1 NA NA chr3 92629374 GTCxTAG T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999998 64 0 0 11.157718 0.217391 0.02 -0.201674 18 5 490 140 60 60 0 0 TT 10.227362 34 0 957 0 KEEP - Kprp NO B[a]P_3 chr3 93092443 93092443 G T intergenic "Flg2(dist=67145),Hrnr(dist=31228)" NA NA intergenic "Flg(dist=8208),Hrnr(dist=31228)" NA NA exonic ENSMUSG00000092163 nonsynonymous SNV ENSMUST00000107298:c.G862T:p.G288W 3qF2.1 "Score=0.985286;Name=No.81785,chr3:93084022" NA chr3 93092443 CGCxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.22917 0.229173 0.999988 56 0 8 11.540583 0.333333 0.02 -0.131449 10 5 252 133 15 25 0 0 GG 8.41422 28 0 719 0 KEEP NA Flg2 YES B[a]P_3 chr3 94741837 94741837 G T intronic Selenbp1 NA NA intronic Selenbp1 NA NA intronic ENSMUSG00000068874 NA NA 3qF2.1 "Score=0.960097;Name=No.81847,chr3:94480424" NA chr3 94741837 CCTxGCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 170 3 0 204.951883 1 0.02 1.027459 0 65 0 1740 0 60 0 0 GG 23.757963 79 0 2258 0 KEEP + Selenbp1 YES B[a]P_3 chr3 94800867 94800867 G T exonic Pi4kb synonymous SNV NM_175356:c.G1674T:p.L558L exonic Pi4kb synonymous SNV uc008qhn.2:c.G723T:p.L241L exonic ENSMUSG00000038861 synonymous SNV ENSMUST00000167008:c.G723T:p.L241L 3qF2.1 NA NA chr3 94800867 GCTxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 50 0 0 64.540032 0.954545 0.02 -0.19289 1 21 27 563 60 60 0 0 GG 7.515871 25 0 679 0 KEEP + Pi4kb YES B[a]P_3 chr3 95989110 95989110 G T exonic Sv2a stopgain SNV NM_022030:c.G202T:p.G68X exonic Sv2a stopgain SNV uc008qmf.1:c.G202T:p.G68X exonic ENSMUSG00000038486 stopgain SNV ENSMUST00000035371:c.G202T:p.G68X 3qF2.1 NA NA chr3 95989110 CGCxGAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739662 0.739671 0.999988 70 0 0 100.838069 1 0.02 -0.280563 0 32 0 856 0 60 0 0 GG 8.107813 27 0 699 0 KEEP + Sv2a YES B[a]P_3 chr3 96401514 96401514 A T exonic Ankrd34a nonsynonymous SNV NM_001024851:c.A110T:p.Q37L exonic Ankrd34a nonsynonymous SNV uc008qng.1:c.A110T:p.Q37L exonic ENSMUSG00000049097 nonsynonymous SNV ENSMUST00000164141:c.A110T:p.Q37L 3qF2.1 NA NA chr3 96401514 CCCxGGG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 70 0 0 109.665136 1 0.02 -0.306855 0 35 0 930 0 60 0 0 AA 9.32321 31 0 851 0 KEEP + Ankrd34a NO B[a]P_3 chr3 97523201 97523201 C A intronic Pde4dip NA NA intronic Pde4dip NA NA intronic ENSMUSG00000038170 NA NA 3qF2.2 NA NA chr3 97523201 CACxTAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 184 0 0 59.798702 0.342105 0.02 0.833646 50 26 1372 686 60 60 0 0 CC 26.153386 87 0 2423 0 KEEP - Pde4dip YES B[a]P_3 chr3 98423389 98423389 G T exonic Hsd3b5 synonymous SNV NM_008295:c.C663A:p.A221A exonic Hsd3b5 synonymous SNV uc008qqb.1:c.C663A:p.A221A exonic ENSMUSG00000038092 synonymous SNV ENSMUST00000044094:c.C663A:p.A221A 3qF2.2 "Score=0.909901;Name=No.81868,chr3:98385028" NA chr3 98423389 GTTxGCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 251 0 8 301.178504 0.979798 0.02 0.729374 2 97 52 2592 36 57 0 0 GG 39.351149 134 1 3744 8 KEEP - Hsd3b5 YES B[a]P_3 chr4 100637030 100637030 G T splicing Cachd1(NM_198037:exon9:c.1199-1G>T) NA NA splicing "Cachd1(uc008tvg.1:exon9:c.1199-1G>T,uc008tvh.1:exon9:c.1199-1G>T)" NA NA splicing "ENSMUSG00000028532(ENSMUST00000097955:exon9:c.1199-1G>T,ENSMUST00000030257:exon9:c.1199-1G>T)" NA NA 4qC6 NA NA chr4 100637030 GCAxATG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 95 2 0 23.150773 0.323529 0.02 -0.29809 23 11 647 272 60 60 0 0 GG 14.440482 48 0 1390 0 KEEP + Cachd1 YES B[a]P_3 chr4 100646772 100646772 T C intronic Cachd1 NA NA intronic Cachd1 NA NA intronic ENSMUSG00000028532 NA NA 4qC6 NA NA chr4 100646772 GGCxACA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291975 0.292001 0.999909 47 0 0 6.39547 0.176471 0.02 -0.148817 14 3 351 84 60 60 0 0 TT 7.216992 24 0 640 0 KEEP + Cachd1 NO B[a]P_3 chr4 101289488 101289488 C A intronic Dnajc6 NA NA intronic Dnajc6 NA NA intronic ENSMUSG00000028528 NA NA 4qC6 NA NA chr4 101289488 TGAxCTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 185 1 0 54.546747 0.324675 0.02 0.824943 52 25 1420 637 60 60 0 0 CC 28.569482 95 0 2623 0 KEEP + Dnajc6 YES B[a]P_3 chr4 102991994 102991994 G T exonic Oma1 nonsynonymous SNV NM_025909:c.G349T:p.A117S exonic Oma1 nonsynonymous SNV uc008txq.1:c.G349T:p.A117S exonic ENSMUSG00000035069 nonsynonymous SNV ENSMUST00000035780:c.G349T:p.A117S 4qC6 NA NA chr4 102991994 GCGxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 112 0 0 73.694123 0.652174 0.02 -0.402438 16 30 445 724 60 60 0 0 GG 15.036765 50 0 1364 0 KEEP + Oma1 YES B[a]P_3 chr4 107641208 107641208 G T exonic Slc1a7 nonsynonymous SNV NM_146255:c.G58T:p.G20W exonic Slc1a7 nonsynonymous SNV uc008uao.2:c.G58T:p.G20W exonic ENSMUSG00000008932 nonsynonymous SNV ENSMUST00000009076:c.G28T:p.G10W 4qC7 NA NA chr4 107641208 CGAxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 76 0 0 30.944603 0.4 0.02 -0.306746 21 14 562 345 60 60 0 0 GG 9.923711 33 0 915 0 KEEP + Slc1a7 YES B[a]P_3 chr4 114598240 114598240 G C exonic Foxe3 nonsynonymous SNV NM_015758:c.C379G:p.R127G exonic Foxe3 nonsynonymous SNV uc008uef.1:c.C379G:p.R127G exonic ENSMUSG00000044518 nonsynonymous SNV ENSMUST00000050940:c.C379G:p.R127G 4qD1 NA NA chr4 114598240 CGCxCGG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 151 0 0 119.447595 0.716667 0.02 1.15318 17 43 393 1146 60 60 0 0 GG 24.025324 80 0 1967 0 KEEP - Foxe3 NO B[a]P_3 chr4 116360077 116360077 G T exonic Prdx1 nonsynonymous SNV NM_011034:c.G55T:p.A19S exonic Prdx1 nonsynonymous SNV uc008uhd.1:c.G55T:p.A19S exonic ENSMUSG00000028691 nonsynonymous SNV ENSMUST00000030454:c.G55T:p.A19S 4qD1 NA NA chr4 116360077 ACAxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 297 38 4 15.857391 0.083333 0.02 1.948371 110 10 3020 260 60 37 0 0 GG 43.917305 146 0 4114 0 KEEP + Prdx1 YES B[a]P_3 chr4 118121297 118121297 C A intronic Mpl NA NA intronic Mpl NA NA intronic ENSMUSG00000006389 NA NA 4qD2.1 NA NA chr4 118121297 CTGxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.518544 0.522161 0.993072 39 0 0 27.756581 0.458333 0.02 -0.210448 13 11 365 297 60 60 0 0 CC 3.296813 11 0 294 0 KEEP - Mpl YES B[a]P_3 chr4 118338586 118338586 G A exonic Olfr62 nonsynonymous SNV NM_146315:c.G463A:p.G155S exonic Olfr62 nonsynonymous SNV uc008ukp.1:c.G463A:p.G155S exonic ENSMUSG00000043698 nonsynonymous SNV ENSMUST00000102666:c.G463A:p.G155S 4qD2.1 NA NA chr4 118338586 TGGxGTA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 194 2 0 109.36025 0.554054 0.02 0.939723 33 41 906 1119 60 60 0 0 GG 30.067289 100 0 2769 0 KEEP + Olfr62 NO B[a]P_3 chr4 118426587 118426587 C A exonic Olfr1338 synonymous SNV NM_207152:c.G555T:p.V185V exonic Olfr1338 synonymous SNV uc008uku.1:c.G555T:p.V185V exonic ENSMUSG00000066063 synonymous SNV ENSMUST00000084315:c.G555T:p.V185V 4qD2.1 "Score=0.910256;Name=No.86361,chr4:118589148" NA chr4 118426587 ACGxACT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 308 0 0 67.740896 0.285714 0.02 2.239225 75 30 2039 807 60 60 0 0 CC 46.276788 154 0 4294 0 KEEP - Olfr1338 YES B[a]P_3 chr4 120215135 120215135 C T splicing Ctps(NM_016748:exon17:c.1546+1G>A) NA NA splicing Ctps(uc008unj.2:exon17:c.1546+1G>A) NA NA splicing ENSMUSG00000028633(ENSMUST00000030381:exon17:c.1546+1G>A) NA NA 4qD2.2 NA NA chr4 120215135 TCAxCTT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 428 1 0 118.768904 0.358108 0.02 1.791846 95 53 2546 1354 60 60 0 0 CC 61.584882 205 0 5554 0 KEEP - Ctps NO B[a]P_3 chr4 12042519 12042519 G T intergenic "Rbm12b2(dist=19101),Rbm12b1(dist=24745)" NA NA intergenic "C430048L16Rik(dist=19101),Rbm12b(dist=24745)" NA NA ncRNA_exonic ENSMUSG00000083246 NA NA 4qA1 "Score=0.963447;Name=No.85755,chr4:12048580" NA chr4 12042519 TCTxTAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 105 1 15 56.966412 0.52381 0.02 -0.368257 20 22 546 591 60 60 0 0 GG 14.434835 48 0 1302 0 KEEP NA Rbm12b2 YES B[a]P_3 chr4 120778492 120778492 C G exonic Tmco2 nonsynonymous SNV NM_001081312:c.G414C:p.M138I exonic Tmco2 nonsynonymous SNV uc008unz.1:c.G414C:p.M138I exonic ENSMUSG00000078577 nonsynonymous SNV ENSMUST00000106268:c.G414C:p.M138I 4qD2.2 NA NA chr4 120778492 CACxATC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 137 0 0 51.023259 0.4375 0.02 -0.420829 27 21 750 553 60 60 0 0 CC 19.841013 66 0 1848 0 KEEP - Tmco2 NO B[a]P_3 chr4 124733843 124733843 G C exonic Dnali1 nonsynonymous SNV NM_175223:c.C767G:p.P256R exonic Dnali1 nonsynonymous SNV uc008urp.1:c.C767G:p.P256R exonic ENSMUSG00000042707 nonsynonymous SNV ENSMUST00000036383:c.C767G:p.P256R 4qD2.2 NA NA chr4 124733843 TTCxGTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 131 1 0 81.227505 0.647059 0.02 1.248443 18 33 447 799 60 60 0 0 GG 18.32899 61 0 1582 0 KEEP - Dnali1 NO B[a]P_3 chr4 125911749 125911749 C A exonic Map7d1 synonymous SNV NM_001145970:c.G1506T:p.P502P exonic Mtap7d1 synonymous SNV uc008usy.1:c.G816T:p.P272P exonic ENSMUSG00000028849 synonymous SNV ENSMUST00000170140:c.G1611T:p.P537P 4qD2.2 NA NA chr4 125911749 AGCxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 51 0 0 33.416481 0.75 0.02 -0.140229 4 12 92 316 60 60 0 0 CC 8.711414 29 0 714 0 KEEP - Map7d1 YES B[a]P_3 chr4 128046467 128046467 C A intronic Csmd2 NA NA ncRNA_intronic mKIAA1884 NA NA intergenic "ENSMUSG00000085717(dist=106233),ENSMUSG00000028804(dist=25752)" NA NA 4qD2.2 NA NA chr4 128046467 CCCxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 133 2 0 28.447003 0.325 0.02 -0.368228 27 13 737 332 60 60 0 0 CC 22.207944 74 0 2045 0 KEEP + Csmd2 YES B[a]P_3 chr4 129255319 129255319 G C intronic Fam167b NA NA intronic Fam167b NA NA intronic ENSMUSG00000050493 NA NA 4qD2.2 NA NA chr4 129255319 CTGxCTC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 79 0 0 16.102021 0.304348 0.02 -0.201677 16 7 443 189 60 60 0 0 GG 13.529372 45 0 1244 0 KEEP - Fam167b NO B[a]P_3 chr4 129742732 129742732 G C exonic Col16a1 nonsynonymous SNV NM_028266:c.G2026C:p.G676R exonic Col16a1 nonsynonymous SNV uc008uyu.2:c.G340C:p.G114R exonic ENSMUSG00000040690 nonsynonymous SNV ENSMUST00000143577:c.G1081C:p.G361R 4qD2.2 NA NA chr4 129742732 TTCxGGC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 89 0 0 32.585072 0.394737 0.02 -0.359111 23 15 585 365 60 60 0 0 GG 11.41335 38 0 984 0 KEEP + Col16a1 NO B[a]P_3 chr4 131413708 131413708 C A exonic Mecr nonsynonymous SNV NM_025297:c.C443A:p.A148E exonic Mecr nonsynonymous SNV uc008vae.2:c.C443A:p.A148E exonic ENSMUSG00000028910 nonsynonymous SNV ENSMUST00000030742:c.C443A:p.A148E 4qD2.3 NA NA chr4 131413708 AAGxACT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 69 0 0 25.725524 0.333333 0.02 -0.289358 22 11 608 296 60 60 0 0 CC 9.023904 30 0 842 0 KEEP + Mecr YES B[a]P_3 chr4 132267790 132267790 G T exonic Eya3 synonymous SNV NM_211357:c.G981T:p.T327T exonic Eya3 synonymous SNV uc008vbq.1:c.G981T:p.T327T exonic ENSMUSG00000028886 synonymous SNV ENSMUST00000020197:c.G981T:p.T327T 4qD2.3 NA NA chr4 132267790 CACxCAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 170 2 0 100.832602 0.575758 0.02 1.010798 28 38 691 1022 60 60 0 0 GG 22.84152 76 0 1944 0 KEEP + Eya3 YES B[a]P_3 chr4 132850189 132850189 G T exonic Wdtc1 synonymous SNV NM_199306:c.C1948A:p.R650R exonic Wdtc1 synonymous SNV uc012dml.1:c.C1948A:p.R650R exonic ENSMUSG00000037622 synonymous SNV ENSMUST00000043305:c.C1948A:p.R650R 4qD2.3 NA NA chr4 132850189 TCCxATA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 125 0 0 87.260024 0.641509 0.02 1.13317 19 34 458 861 60 60 0 0 GG 18.319585 61 0 1527 0 KEEP - Wdtc1 YES B[a]P_3 chr4 133236246 133236246 T A exonic Arid1a stoploss SNV NM_001080819:c.A6852T:p.X2284C exonic Arid1a stoploss SNV uc008vdh.1:c.A6852T:p.X2284C exonic ENSMUSG00000007880 stoploss SNV ENSMUST00000008024:c.A5709T:p.X1903C 4qD3 "Score=0.929762;Name=No.63153,chr16:23093012" NA chr4 133236246 CTGxCAT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.521029 0.522161 0.997832 46 0 0 35.794342 0.583333 0.02 -0.210331 10 14 251 362 60 60 0 0 TT 4.811088 16 0 429 0 KEEP - Arid1a NO B[a]P_3 chr4 134972590 134972590 C A intronic Rcan3 NA NA intronic Rcan3 NA NA intronic ENSMUSG00000059713 NA NA 4qD3 NA NA chr4 134972590 CTAxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 126 0 0 35.285 0.319149 0.02 -0.420427 32 15 723 409 70 60 0 0 CC 15.079933 51 0 1067 0 KEEP - Rcan3 YES B[a]P_3 chr4 136251964 136251964 C G exonic Ephb2 nonsynonymous SNV NM_010142:c.G917C:p.R306P exonic Ephb2 nonsynonymous SNV uc008vim.1:c.G917C:p.R306P exonic ENSMUSG00000028664 nonsynonymous SNV ENSMUST00000059287:c.G917C:p.R306P 4qD3 NA NA chr4 136251964 TTGxGGC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 75 0 0 36.530301 0.56 0.02 -0.219104 11 14 269 373 60 60 0 0 CC 12.883293 43 0 1031 0 KEEP - Ephb2 NO B[a]P_3 chr4 136327398 136327398 C A exonic Ephb2 nonsynonymous SNV NM_010142:c.G284T:p.R95L exonic Ephb2 nonsynonymous SNV uc008vim.1:c.G284T:p.R95L exonic ENSMUSG00000028664 nonsynonymous SNV ENSMUST00000059287:c.G284T:p.R95L 4qD3 NA NA chr4 136327398 TCAxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73962 0.739671 0.999931 60 0 0 26.309224 0.34375 0.02 -0.280429 21 11 513 300 60 60 0 0 CC 7.51548 25 0 651 0 KEEP - Ephb2 YES B[a]P_3 chr4 13802673 13802673 G C exonic Runx1t1 nonsynonymous SNV NM_001111026:c.G1269C:p.E423D exonic Runx1t1 nonsynonymous SNV uc008sau.2:c.G1269C:p.E423D exonic ENSMUSG00000006586 nonsynonymous SNV ENSMUST00000006761:c.G1269C:p.E423D 4qA1 NA NA chr4 13802673 AGAxGAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 71 0 0 10.282465 0.24 0.02 -0.219098 19 6 514 134 60 60 0 0 GG 9.024205 30 0 847 0 KEEP + Runx1t1 NO B[a]P_3 chr4 140584435 140584435 C T intronic Crocc NA NA UTR5 Crocc NA NA intronic ENSMUSG00000040860 NA NA 4qD3 NA NA chr4 140584435 GTTxTGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38736 0.387407 0.999879 51 0 0 7.674991 0.222222 0.02 -0.174961 14 4 369 99 60 60 0 0 CC 6.618455 22 0 635 0 KEEP - Crocc NO B[a]P_3 chr4 140584436 140584436 T A intronic Crocc NA NA UTR5 Crocc NA NA intronic ENSMUSG00000040860 NA NA 4qD3 NA NA chr4 140584436 TTCxGGG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38736 0.387407 0.999879 50 0 0 8.669456 0.222222 0.02 -0.175352 14 4 373 109 60 60 0 0 TT 6.61708 22 0 608 0 KEEP - Crocc NO B[a]P_3 chr4 140599386 140599386 C A exonic Crocc nonsynonymous SNV NM_001145958:c.G644T:p.R215L exonic Crocc nonsynonymous SNV uc012dnz.1:c.G644T:p.R215L exonic ENSMUSG00000040860 nonsynonymous SNV ENSMUST00000040222:c.G644T:p.R215L 4qD3 NA NA chr4 140599386 TCCxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 60 0 0 20.713745 0.5 0.02 -0.166271 8 8 176 217 60 60 0 0 CC 9.318055 31 0 802 0 KEEP - Crocc YES B[a]P_3 chr4 14097704 14097704 G A intergenic "Runx1t1(dist=276914),Slc26a7(dist=334640)" NA NA intergenic "Runx1t1(dist=276914),AK144882(dist=41455)" NA NA ncRNA_exonic ENSMUSG00000082128 NA NA 4qA1 "Score=0.942913;Name=No.82408,chr3:149735540" NA chr4 14097704 GATxCTG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229028 0.229173 0.999366 35 0 2 25.816299 0.666667 0.02 -0.131491 5 10 137 252 60 60 0 0 GG 5.413873 18 0 499 0 KEEP NA Runx1t1 NO B[a]P_3 chr4 141373820 141373820 A G exonic Cela2a nonsynonymous SNV NM_007919:c.T758C:p.V253A exonic Cela2a nonsynonymous SNV uc008vpj.1:c.T758C:p.V253A exonic ENSMUSG00000058579 nonsynonymous SNV ENSMUST00000102481:c.T758C:p.V253A 4qE1 NA NA chr4 141373820 AAGxCGG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 109 0 0 17.133667 0.195122 0.02 -0.359446 33 8 863 221 60 60 0 0 AA 14.428122 48 0 1296 0 KEEP - Cela2a NO B[a]P_3 chr4 141528689 141528689 C A intronic Fhad1 NA NA intronic Fhad1 NA NA intronic ENSMUSG00000051435 NA NA 4qE1 NA NA chr4 141528689 AGCxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 103 0 0 27.537017 0.352941 0.02 -0.298104 22 12 603 314 60 60 0 0 CC 16.50568 55 0 1479 0 KEEP - Fhad1 YES B[a]P_3 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 43 0 0 10.667475 0.277778 0.02 -0.157815 13 5 358 129 60 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 NO B[a]P_3 chr4 145126561 145126561 A T intergenic "Smarca5-ps(dist=68697),Gm13212(dist=80488)" NA NA exonic RP23-282C23.3 nonsynonymous SNV uc008vrz.1:c.A225T:p.E75D exonic ENSMUSG00000078503 nonsynonymous SNV ENSMUST00000105742:c.A225T:p.E75D 4qE1 "Score=0.961574;Name=No.86488,chr4:146045720" NA chr4 145126561 TGAxCAC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1241 5 10 30.057934 0.056452 0.02 7.196194 351 21 9281 550 70 57 0 0 AA 207.486554 690 0 18866 0 KEEP NA Smarca5-ps NO B[a]P_3 chr4 146884886 146884886 G T exonic Gm13152 nonsynonymous SNV NM_001039209:c.G55T:p.A19S exonic Gm13152 nonsynonymous SNV uc008vsu.1:c.G55T:p.A19S exonic ENSMUSG00000078496 nonsynonymous SNV ENSMUST00000063704:c.G55T:p.A19S 4qE1 "Score=0.907334;Name=No.86654,chr4:145540525" NA chr4 146884886 GTGxCCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1339 136 34 35.674715 0.080986 0.02 5.905646 261 23 7155 593 60 37 0 0 GG 240.520458 800 0 22074 0 KEEP + Gm13152 YES B[a]P_3 chr4 147447113 147447113 G T intergenic "Mthfr(dist=13442),Agtrap(dist=4057)" NA NA intergenic "Mthfr(dist=13442),Agtrap(dist=4057)" NA NA ncRNA_exonic ENSMUSG00000078494 NA NA 4qE2 NA NA chr4 147447113 GGGxTAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999999 77 0 0 14.742687 0.21875 0.02 -0.28056 25 7 669 187 60 60 0 0 GG 10.463965 35 0 933 0 KEEP NA Mthfr YES B[a]P_3 chr4 147938787 147938787 A T exonic Exosc10 nonsynonymous SNV NM_016699:c.A1024T:p.T342S exonic Exosc10 nonsynonymous SNV uc008vut.2:c.A1024T:p.T342S exonic ENSMUSG00000017264 nonsynonymous SNV ENSMUST00000017408:c.A1024T:p.T342S 4qE2 NA NA chr4 147938787 GACxCCC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 188 2 0 58.525796 0.357143 0.02 0.984161 45 25 1096 664 60 60 0 0 AA 25.830077 86 0 2185 0 KEEP + Exosc10 NO B[a]P_3 chr4 148843011 148843011 T A exonic Nmnat1 nonsynonymous SNV NM_133435:c.A752T:p.K251M exonic Nmnat1 nonsynonymous SNV uc008vwj.1:c.A752T:p.K251M exonic ENSMUSG00000028992 nonsynonymous SNV ENSMUST00000030845:c.A752T:p.K251M 4qE2 NA NA chr4 148843011 TGCxTCT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 210 0 0 175.957565 0.653846 0.02 2.08833 36 68 976 1727 60 60 0 0 TT 24.664804 82 0 2296 0 KEEP - Nmnat1 NO B[a]P_3 chr4 149620803 149620803 G T exonic Eno1 synonymous SNV NM_023119:c.G792T:p.P264P exonic "Eno1,Gm5506" synonymous SNV uc008vxq.2:c.G588T:p.P196P exonic ENSMUSG00000063524 synonymous SNV ENSMUST00000080149:c.G588T:p.P196P 4qE2 NA NA chr4 149620803 TCCxGAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 87 1 0 44.590866 0.566667 0.02 -0.350628 13 17 343 454 60 60 0 0 GG 13.210773 44 0 1133 0 KEEP + Eno1 YES B[a]P_3 chr4 150449298 150449298 C A exonic Camta1 nonsynonymous SNV NM_001081557:c.G4813T:p.A1605S exonic Camta1 nonsynonymous SNV uc008vyk.2:c.G1654T:p.A552S exonic ENSMUSG00000014592 nonsynonymous SNV ENSMUST00000140030:c.G481T:p.A161S 4qE2 NA NA chr4 150449298 CAGxGCG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 138 0 0 90.294239 0.622642 0.02 1.124081 20 33 464 898 60 60 0 0 CC 19.532704 65 0 1646 0 KEEP - Camta1 YES B[a]P_3 chr4 151470868 151470868 G T UTR5 Plekhg5 NA NA UTR5 Plekhg5 NA NA UTR5 ENSMUSG00000039713 NA NA 4qE2 NA NA chr4 151470868 CGCxGCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38738 0.387407 0.999931 48 0 0 25.955211 0.5 0.02 -0.175213 10 10 216 272 60 60 0 0 GG 7.50791 25 0 594 0 KEEP + Plekhg5 YES B[a]P_3 chr4 151513188 151513188 G C exonic Espn nonsynonymous SNV NM_207687:c.C635G:p.A212G exonic Espn nonsynonymous SNV uc008vzt.1:c.C635G:p.A212G exonic ENSMUSG00000028943 nonsynonymous SNV ENSMUST00000135185:c.C341G:p.A114G 4qE2 NA NA chr4 151513188 GCGxCAT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 136 0 0 136.291348 0.7 0.02 1.082518 21 49 566 1316 60 60 0 0 GG 16.241995 54 0 1494 0 KEEP - Espn NO B[a]P_3 chr4 153435566 153435566 A T exonic Trp73 nonsynonymous SNV NM_001126330:c.T1248A:p.N416K exonic Trp73 nonsynonymous SNV uc008wbg.2:c.T1248A:p.N416K exonic ENSMUSG00000029026 nonsynonymous SNV ENSMUST00000097763:c.T1099A:p.W367R 4qE2 NA NA chr4 153435566 ACCxTTG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 115 0 0 42.603981 0.36 0.02 -0.43817 32 18 807 482 60 60 0 0 AA 14.735323 49 0 1314 0 KEEP - Trp73 NO B[a]P_3 chr4 153436102 153436102 G T exonic Trp73 synonymous SNV NM_001126330:c.C1164A:p.P388P exonic Trp73 synonymous SNV uc008wbg.2:c.C1164A:p.P388P exonic ENSMUSG00000029026 synonymous SNV ENSMUST00000105643:c.C1164A:p.P388P 4qE2 NA NA chr4 153436102 CGGxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 55 0 0 26.808992 0.611111 0.02 -0.157741 7 11 196 268 60 60 0 0 GG 9.925424 33 0 915 0 KEEP - Trp73 YES B[a]P_3 chr4 154041573 154041573 G T exonic Actrt2 nonsynonymous SNV NM_028513:c.C214A:p.H72N exonic Actrt2 nonsynonymous SNV uc008wca.2:c.C214A:p.H72N exonic ENSMUSG00000051276 nonsynonymous SNV ENSMUST00000060062:c.C214A:p.H72N 4qE2 NA NA chr4 154041573 AGTxCAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 90 2 0 30.774894 0.361111 0.02 -0.324429 23 13 640 348 60 60 0 0 GG 12.934045 43 0 1209 0 KEEP - Actrt2 YES B[a]P_3 chr4 154449022 154449022 A C UTR3 Rer1 NA NA UTR3 Rer1 NA NA UTR3 ENSMUSG00000029048 NA NA 4qE2 NA NA chr4 154449022 TTGxGTC A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 267 0 0 68.38245 0.319588 0.02 0.73848 66 31 1776 800 60 60 0 0 AA 40.563998 135 0 3712 0 KEEP - Rer1 NO B[a]P_3 chr4 16051671 16051671 C A exonic Ripk2 nonsynonymous SNV NM_138952:c.G1183T:p.G395C exonic Ripk2 nonsynonymous SNV uc008sbr.1:c.G1183T:p.G395C exonic ENSMUSG00000041135 nonsynonymous SNV ENSMUST00000037035:c.G1183T:p.G395C 4qA2 NA NA chr4 16051671 TACxATC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 135 0 0 24.107121 0.171429 0.02 0.930926 58 12 1620 323 60 60 0 0 CC 15.339745 51 0 1447 0 KEEP - Ripk2 YES B[a]P_3 chr4 16051679 16051679 C A exonic Ripk2 nonsynonymous SNV NM_138952:c.G1175T:p.S392I exonic Ripk2 nonsynonymous SNV uc008sbr.1:c.G1175T:p.S392I exonic ENSMUSG00000041135 nonsynonymous SNV ENSMUST00000037035:c.G1175T:p.S392I 4qA2 NA NA chr4 16051679 CAGxTGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 132 0 0 18.321979 0.149254 0.02 0.851151 57 10 1596 258 60 60 0 0 CC 15.025267 50 0 1403 0 KEEP - Ripk2 YES B[a]P_3 chr4 16051684 16051684 G C exonic Ripk2 nonsynonymous SNV NM_138952:c.C1170G:p.N390K exonic Ripk2 nonsynonymous SNV uc008sbr.1:c.C1170G:p.N390K exonic ENSMUSG00000041135 nonsynonymous SNV ENSMUST00000037035:c.C1170G:p.N390K 4qA2 NA NA chr4 16051684 GTGxTTT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 126 0 0 18.315715 0.140625 0.02 1.072674 55 9 1492 253 60 60 0 0 GG 14.390797 48 0 1295 0 KEEP - Ripk2 NO B[a]P_3 chr4 16090502 16090502 C A exonic Ripk2 synonymous SNV NM_138952:c.G42T:p.P14P exonic Ripk2 synonymous SNV uc008sbr.1:c.G42T:p.P14P exonic ENSMUSG00000041135 synonymous SNV ENSMUST00000037035:c.G42T:p.P14P 4qA2 NA NA chr4 16090502 GTAxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 94 0 0 45.776574 0.473684 0.02 -0.332969 20 18 464 486 60 60 0 0 CC 12.620328 42 0 1048 0 KEEP - Ripk2 YES B[a]P_3 chr4 18822276 18822276 C A intergenic "Mmp16(dist=776395),Cngb3(dist=385721)" NA NA intergenic "Mmp16(dist=776395),Cngb3(dist=385721)" NA NA exonic ENSMUSG00000073991 synonymous SNV ENSMUST00000137780:c.G612T:p.T204T 4qA3 NA NA chr4 18822276 GCCxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.999859 31 0 0 12.347161 0.416667 0.02 -0.105155 7 5 168 135 60 60 0 0 CC 5.39248 18 0 429 0 KEEP NA Mmp16 YES B[a]P_3 chr4 32903864 32903864 G T intronic Ankrd6 NA NA intronic Ankrd6 NA NA intronic ENSMUSG00000040183 NA NA 4qA5 NA NA chr4 32903864 TCTxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 50 0 0 7.638853 0.16 0.02 -0.219225 21 4 593 105 60 60 0 0 GG 6.91522 23 0 633 0 KEEP - Ankrd6 YES B[a]P_3 chr4 33318018 33318018 G T exonic Srsf12 nonsynonymous SNV NM_177774:c.G551T:p.R184L exonic Srsf13b nonsynonymous SNV uc008sft.1:c.G551T:p.R184L exonic ENSMUSG00000054679 nonsynonymous SNV ENSMUST00000067864:c.G551T:p.R184L 4qA5 NA NA chr4 33318018 GACxATC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 71 0 0 27.912309 0.419355 0.02 -0.271297 18 13 476 309 60 60 0 0 GG 11.426654 38 0 1039 0 KEEP + Srsf12 YES B[a]P_3 chr4 40421978 40421978 G T UTR3 Tmem215 NA NA UTR3 Tmem215 NA NA UTR3 ENSMUSG00000046593 NA NA 4qA5 NA NA chr4 40421978 TAGxGAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 159 0 0 67.460301 0.5625 0.02 -0.42064 21 27 580 689 60 60 0 0 GG 24.339524 81 0 2269 0 KEEP + Tmem215 YES B[a]P_3 chr4 41458648 41458648 G T intronic 1110017D15Rik NA NA intronic "1110017D15Rik,Smrp1" NA NA intronic ENSMUSG00000028441 NA NA 4qA5 NA NA chr4 41458648 AGGxAGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161341 0.162467 0.993072 28 0 0 13.962366 0.461538 0.02 -0.113973 7 6 197 150 60 60 0 0 GG 3.309087 11 0 314 0 KEEP - 1110017D15Rik YES B[a]P_3 chr4 41740458 41740458 G T intergenic "Ccl27a(dist=19409),Gm3893(dist=22836)" NA NA intronic Ccl27a NA NA ncRNA_exonic ENSMUSG00000084194 NA NA 4qA5 "Score=0.98628;Name=No.85803,chr4:42564258" NA chr4 41740458 AGTxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.25975 0.260965 0.995343 71 0 32 30.326638 0.6875 0.02 -0.140286 5 11 138 294 20 20 0 0 GG 7.820708 26 0 729 0 KEEP NA Ccl27a YES B[a]P_3 chr4 42862924 42862924 G C exonic Gm12429 nonsynonymous SNV NM_001277167:c.C2103G:p.F701L intergenic "DQ565859(dist=1718),BC049635(dist=17951)" NA NA exonic ENSMUSG00000078721 nonsynonymous SNV ENSMUST00000107979:c.C2103G:p.F701L 4qA5 "Score=0.977332;Name=No.85963,chr4:42483632" NA chr4 42862924 TGGxAAT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 64 0 29 20.59782 0.5 0.02 -0.14905 8 8 222 216 36 36 0 0 GG 6.31689 21 0 592 0 KEEP - Gm12429 NO B[a]P_3 chr4 43556670 43556670 C G intronic Tln1 NA NA intronic Tln1 NA NA intronic ENSMUSG00000028465 NA NA 4qB1 NA NA chr4 43556670 TAGxCAT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 160 0 0 34.238758 0.235294 0.02 1.099856 52 16 1395 427 60 60 0 0 CC 20.130599 67 0 1831 0 KEEP - Tln1 NO B[a]P_3 chr4 44710470 44710470 G T exonic Pax5 nonsynonymous SNV NM_008782:c.C136A:p.H46N exonic Pax5 nonsynonymous SNV uc008srx.1:c.C136A:p.H46N exonic ENSMUSG00000014030 nonsynonymous SNV ENSMUST00000014174:c.C136A:p.H46N 4qB1 NA NA chr4 44710470 GATxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 73 0 0 26.998024 0.44 0.02 -0.227955 14 11 381 292 60 60 0 0 GG 11.431831 38 0 1097 0 KEEP - Pax5 YES B[a]P_3 chr4 46627043 46627043 C A exonic Tbc1d2 nonsynonymous SNV NM_198664:c.G1909T:p.V637F exonic Tbc1d2 nonsynonymous SNV uc008suf.1:c.G1909T:p.V637F exonic ENSMUSG00000039813 nonsynonymous SNV ENSMUST00000084621:c.G1909T:p.V637F 4qB1 NA NA chr4 46627043 TGAxACG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.999859 44 0 0 30.204177 0.521739 0.02 -0.210408 11 12 302 314 60 60 0 0 CC 5.414483 18 0 508 0 KEEP - Tbc1d2 YES B[a]P_3 chr4 49658754 49658754 G A intronic Rnf20 NA NA intronic Rnf20 NA NA intronic ENSMUSG00000028309 NA NA 4qB1 NA NA chr4 49658754 TTTxTAG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 81 0 0 63.979766 0.675676 0.02 -0.333093 12 25 330 622 60 60 0 0 GG 10.528875 35 0 1001 0 KEEP + Rnf20 NO B[a]P_3 chr4 53733031 53733031 G T exonic Fktn nonsynonymous SNV NM_139309:c.G55T:p.A19S exonic Fktn nonsynonymous SNV uc008sxe.1:c.G55T:p.A19S exonic ENSMUSG00000028414 nonsynonymous SNV ENSMUST00000061771:c.G55T:p.A19S 4qB2 NA NA chr4 53733031 TCTxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 217 0 0 112.460955 0.608696 0.02 0.992354 27 42 750 1125 60 60 0 0 GG 31.884476 106 0 2976 0 KEEP + Fktn YES B[a]P_3 chr4 55022037 55022037 A C exonic Zfp462 nonsynonymous SNV NM_172867:c.A1130C:p.D377A exonic Zfp462 nonsynonymous SNV uc008sxi.1:c.A1130C:p.D377A exonic ENSMUSG00000060206 nonsynonymous SNV ENSMUST00000098070:c.A1130C:p.D377A 4qB3 NA NA chr4 55022037 CTGxCCT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 108 1 0 22.083485 0.243902 0.02 -0.359424 31 10 800 272 60 60 0 0 AA 14.132143 47 0 1270 0 KEEP + Zfp462 NO B[a]P_3 chr4 55023647 55023647 G T exonic Zfp462 nonsynonymous SNV NM_172867:c.G2740T:p.D914Y exonic Zfp462 nonsynonymous SNV uc008sxi.1:c.G2740T:p.D914Y exonic ENSMUSG00000060206 nonsynonymous SNV ENSMUST00000098070:c.G2740T:p.D914Y 4qB3 NA NA chr4 55023647 TCGxACC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 79 0 0 60.662269 0.741935 0.02 -0.27173 8 23 224 574 60 60 0 0 GG 12.633998 42 0 1193 0 KEEP + Zfp462 YES B[a]P_3 chr4 55396436 55396436 G A intronic Rad23b NA NA intronic Rad23b NA NA intronic ENSMUSG00000028426 NA NA 4qB3 NA NA chr4 55396436 ATTxTTT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 78 0 0 12.081417 0.24 0.02 -0.219196 19 6 524 152 60 60 0 0 GG 11.414054 38 0 1047 0 KEEP + Rad23b NO B[a]P_3 chr4 56800728 56800728 T G exonic Ikbkap synonymous SNV NM_026079:c.A1074C:p.R358R exonic Ikbkap synonymous SNV uc012del.1:c.A1074C:p.R358R exonic ENSMUSG00000028431 synonymous SNV ENSMUST00000030140:c.A1074C:p.R358R 4qB3 NA NA chr4 56800728 GAGxCGA T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 86 0 0 29.309828 0.461538 0.02 -0.227698 14 12 363 314 60 60 0 0 TT 12.629458 42 0 1126 0 KEEP - Ikbkap NO B[a]P_3 chr4 56981157 56981157 G T exonic Frrs1l stopgain SNV NM_001142965:c.C486A:p.C162X exonic 6430704M03Rik stopgain SNV uc012den.1:c.C108A:p.C36X exonic ENSMUSG00000045589 stopgain SNV ENSMUST00000053681:c.C486A:p.C162X 4qB3 NA NA chr4 56981157 GACxCAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 87 0 0 52.554336 0.571429 0.02 -0.306859 15 20 402 534 60 60 0 0 GG 14.434807 48 0 1297 0 KEEP - Frrs1l YES B[a]P_3 chr4 58309537 58309537 C A exonic Musk nonsynonymous SNV NM_001037127:c.C264A:p.S88R exonic Musk nonsynonymous SNV uc008syv.1:c.C264A:p.S88R exonic ENSMUSG00000057280 nonsynonymous SNV ENSMUST00000081919:c.C264A:p.S88R 4qB3 NA NA chr4 58309537 GAGxGTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835706 0.835716 0.999988 76 0 0 25.475712 0.297297 0.02 -0.324181 26 11 614 300 60 60 0 0 CC 8.106819 27 0 648 0 KEEP + Musk YES B[a]P_3 chr4 58964737 58964737 C A exonic Zkscan16 nonsynonymous SNV NM_001099323:c.C539A:p.S180Y exonic Zkscan16 nonsynonymous SNV uc008szl.1:c.C539A:p.S180Y exonic ENSMUSG00000038630 nonsynonymous SNV ENSMUST00000107554:c.C539A:p.S180Y 4qB3 NA NA chr4 58964737 TCTxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 129 0 0 52.08354 0.347826 0.02 0.798387 45 24 1250 600 60 60 0 0 CC 14.139101 47 0 1348 0 KEEP + Zkscan16 YES B[a]P_3 chr4 59732773 59732773 G T exonic E130308A19Rik stopgain SNV NM_153158:c.G1432T:p.E478X exonic E130308A19Rik stopgain SNV uc008taa.1:c.G1432T:p.E478X exonic ENSMUSG00000045071 stopgain SNV ENSMUST00000052420:c.G1432T:p.E478X 4qB3 NA NA chr4 59732773 AAAxAGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 74 0 0 59.048217 0.585366 0.02 -0.359422 17 24 482 597 60 60 0 0 GG 9.025054 30 0 863 0 KEEP + E130308A19Rik YES B[a]P_3 chr4 62813705 62813705 C T exonic Ambp nonsynonymous SNV NM_007443:c.G170A:p.R57H exonic Ambp nonsynonymous SNV uc008tfp.1:c.G170A:p.R57H exonic ENSMUSG00000028356 nonsynonymous SNV ENSMUST00000030041:c.G170A:p.R57H 4qB3 NA NA chr4 62813705 ATGxGGC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 117 0 0 63.791894 0.685714 0.02 -0.306608 11 24 240 618 60 60 0 0 CC 17.723483 59 0 1433 0 KEEP - Ambp NO B[a]P_3 chr4 63495254 63495254 A T exonic Tnfsf8 nonsynonymous SNV NM_009403:c.T607A:p.L203I exonic Tnfsf8 nonsynonymous SNV uc008thd.1:c.T607A:p.L203I exonic ENSMUSG00000028362 nonsynonymous SNV ENSMUST00000030047:c.T607A:p.L203I 4qC1 NA NA chr4 63495254 GTAxGTA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 75 0 0 22.443619 0.357143 0.02 -0.245483 18 10 489 256 60 60 0 0 AA 10.527797 35 0 978 0 KEEP - Tnfsf8 NO B[a]P_3 chr4 6624905 6624905 T A exonic Tox synonymous SNV NM_145711:c.A1044T:p.P348P exonic Tox synonymous SNV uc008rxs.2:c.A1044T:p.P348P exonic ENSMUSG00000041272 synonymous SNV ENSMUST00000039987:c.A1044T:p.P348P 4qA1 NA NA chr4 6624905 GGGxGGC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.550947 0.552887 0.99649 45 0 0 31.007244 0.48 0.02 -0.219171 13 12 333 328 60 60 0 0 TT 4.510296 15 0 398 0 KEEP - Tox NO B[a]P_3 chr4 73064604 73064604 G T exonic Gm11487 nonsynonymous SNV NM_001013393:c.C227A:p.S76Y exonic Gm11487 nonsynonymous SNV uc008tio.1:c.C227A:p.S76Y exonic ENSMUSG00000066137 nonsynonymous SNV ENSMUST00000084480:c.C227A:p.S76Y 4qC3 "Score=0.938821;Name=No.86279,chr4:73287202" NA chr4 73064604 TTAxAGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 343 1 49 94.29309 0.361345 0.02 1.76334 76 43 2131 1076 50 50 0 0 GG 52.644668 175 0 5024 0 KEEP - Gm11487 YES B[a]P_3 chr4 75601222 75601222 G T exonic Ptprd synonymous SNV NM_011211:c.C3939A:p.T1313T exonic Ptprd synonymous SNV uc008tjl.1:c.C3177A:p.T1059T exonic ENSMUSG00000028399 synonymous SNV ENSMUST00000102834:c.C3177A:p.T1059T 4qC3 NA NA chr4 75601222 CTGxGTA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 66 0 0 38.193258 0.555556 0.02 -0.236711 12 15 328 391 60 60 0 0 GG 10.225421 34 0 935 0 KEEP - Ptprd YES B[a]P_3 chr4 80966249 80966249 C A splicing Mpdz(NM_010820:exon26:c.3594+1G>T) NA NA splicing "Mpdz(uc012dgl.1:exon26:c.3636+1G>T,uc008tjw.2:exon25:c.3594+1G>T,uc008tjx.1:exon26:c.3594+1G>T)" NA NA splicing "ENSMUSG00000028402(ENSMUST00000107261:exon26:c.3597+1G>T,ENSMUST00000107262:exon26:c.3597+1G>T,ENSMUST00000107258:exon5:c.573+1G>T,ENSMUST00000102830:exon26:c.3594+1G>T,ENSMUST00000070461:exon26:c.3597+1G>T,ENSMUST00000168999:exon26:c.3636+1G>T,ENSMUST00000131197:exon2:c.178+1G>T)" NA NA 4qC3 NA NA chr4 80966249 TTAxCTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 108 0 0 51.209545 0.411765 0.02 1.150186 30 21 812 562 60 60 0 0 CC 14.13508 47 0 1277 0 KEEP - Mpdz YES B[a]P_3 chr4 82586642 82586642 G T intronic Frem1 NA NA UTR3 Frem1 NA NA UTR3 ENSMUSG00000059049 NA NA 4qC3 NA NA chr4 82586642 AGAxAGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139181 0.139832 0.995343 28 1 0 27.512584 0.833333 0.02 -0.105187 2 10 57 251 60 60 0 0 GG 4.21157 14 0 400 0 KEEP - Frem1 YES B[a]P_3 chr4 86091609 86091609 G T exonic Fam154a synonymous SNV NM_001081096:c.C540A:p.T180T exonic Fam154a synonymous SNV uc008tlt.1:c.C540A:p.T180T exonic ENSMUSG00000028492 synonymous SNV ENSMUST00000030216:c.C540A:p.T180T 4qC4 NA NA chr4 86091609 CATxGTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 154 0 0 40.927656 0.305085 0.02 1.080021 41 18 1127 481 60 60 0 0 GG 24.647604 82 0 2273 0 KEEP - Fam154a YES B[a]P_3 chr4 86420433 86420433 G T exonic Dennd4c nonsynonymous SNV NM_184088:c.G275T:p.G92V exonic Dennd4c nonsynonymous SNV uc008tma.1:c.G275T:p.G92V exonic ENSMUSG00000038024 nonsynonymous SNV ENSMUST00000167614:c.G275T:p.G92V 4qC4 NA NA chr4 86420433 GAGxGAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196303 0.196312 0.999957 46 0 0 20.85063 0.615385 0.02 -0.122736 5 8 135 208 60 60 0 0 GG 7.820651 26 0 726 0 KEEP + Dennd4c YES B[a]P_3 chr4 86483364 86483364 G T exonic Dennd4c nonsynonymous SNV NM_184088:c.G4888T:p.V1630L exonic Dennd4c nonsynonymous SNV uc008tmc.1:c.G2611T:p.V871L exonic ENSMUSG00000038024 nonsynonymous SNV ENSMUST00000167614:c.G4888T:p.V1630L 4qC4 NA NA chr4 86483364 AACxTAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.490541 0.490544 0.999992 89 0 12 18.867046 0.347826 0.02 -0.201504 15 8 350 215 60 60 0 0 GG 14.422524 48 0 1191 0 KEEP + Dennd4c YES B[a]P_3 chr4 8754282 8754282 G C intronic Chd7 NA NA intronic Chd7 NA NA intronic ENSMUSG00000041235 NA NA 4qA1 NA NA chr4 8754282 AGCxGTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.999859 49 0 0 31.867726 0.555556 0.02 -0.236455 12 15 323 328 60 60 0 0 GG 5.110545 17 0 447 0 KEEP + Chd7 NO B[a]P_3 chr4 94304995 94304995 A G exonic Lrrc19 synonymous SNV NM_175305:c.T1015C:p.L339L exonic Lrrc19 synonymous SNV uc008tsh.1:c.T1015C:p.L339L exonic ENSMUSG00000049799 synonymous SNV ENSMUST00000053419:c.T1015C:p.L339L 4qC5 NA NA chr4 94304995 GCAxCTG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 80 0 0 79.801219 0.771429 0.02 -0.306906 8 27 217 751 60 60 0 0 AA 9.323657 31 0 851 0 KEEP - Lrrc19 NO B[a]P_3 chr4 96250700 96250700 T A exonic Cyp2j9 nonsynonymous SNV NM_028979:c.A491T:p.H164L exonic Cyp2j9 nonsynonymous SNV uc008ttj.1:c.A491T:p.H164L exonic ENSMUSG00000015224 nonsynonymous SNV ENSMUST00000055693:c.A491T:p.H164L 4qC5 NA NA chr4 96250700 TAGxGAG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 180 0 0 65.108167 0.380282 0.02 0.975145 44 27 1098 727 60 60 0 0 TT 25.009711 87 1 2317 10 KEEP - Cyp2j9 NO B[a]P_3 chr4 98400344 98400344 C A exonic L1td1 nonsynonymous SNV NM_001081202:c.C451A:p.L151M exonic L1td1 nonsynonymous SNV uc008tuj.1:c.C451A:p.L151M exonic ENSMUSG00000087166 nonsynonymous SNV ENSMUST00000173659:c.C451A:p.L151M 4qC6 "Score=0.906792;Name=No.55186,chr14:13825321" NA chr4 98400344 GCCxTGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457701 0.457757 0.999879 48 0 0 7.570916 0.285714 0.02 -0.192815 10 4 274 93 60 60 0 0 CC 6.605966 22 0 610 0 KEEP + L1td1 YES B[a]P_3 chr4 98962723 98962723 G C intergenic "Atg4c(dist=36245),Foxd3(dist=360267)" NA NA intergenic "Atg4c(dist=36245),Foxd3(dist=360267)" NA NA exonic ENSMUSG00000070891 nonsynonymous SNV ENSMUST00000094955:c.G121C:p.V41L 4qC6 NA NA chr4 98962723 CCAxTGG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 45 0 0 21.450457 0.615385 0.02 -0.113988 5 8 145 214 60 60 0 0 GG 6.917287 23 0 648 0 KEEP NA Atg4c NO B[a]P_3 chr5 104017238 104017238 G T intronic Ptpn13 NA NA intronic Ptpn13 NA NA intronic ENSMUSG00000034573 NA NA 5qE5 NA NA chr5 104017238 AATxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119558 0.120436 0.992708 24 0 0 9.276528 0.363636 0.02 -0.096442 7 4 190 105 60 60 0 0 GG 3.008073 10 0 282 0 KEEP + Ptpn13 YES B[a]P_3 chr5 104640709 104640709 C A exonic Dmp1 stopgain SNV NM_016779:c.C231A:p.Y77X exonic Dmp1 stopgain SNV uc008yke.1:c.C231A:p.Y77X exonic ENSMUSG00000029307 stopgain SNV ENSMUST00000066708:c.C231A:p.Y77X 5qE5 NA NA chr5 104640709 CTAxGAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 128 0 0 26.468866 0.24 0.02 1.150562 38 12 893 327 60 60 0 0 CC 18.313376 61 0 1497 0 KEEP + Dmp1 YES B[a]P_3 chr5 104731497 104731497 C A exonic Ibsp nonsynonymous SNV NM_008318:c.C161A:p.P54H exonic Ibsp nonsynonymous SNV uc008ykg.2:c.C161A:p.P54H exonic ENSMUSG00000029306 nonsynonymous SNV ENSMUST00000031246:c.C161A:p.P54H 5qE5 NA NA chr5 104731497 CTCxTCT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 284 2 0 43.009324 0.198198 0.02 2.026728 89 22 2493 565 60 60 0 0 CC 38.182071 127 0 3580 0 KEEP + Ibsp YES B[a]P_3 chr5 105392652 105392652 C A exonic Abcg3 stopgain SNV NM_030239:c.G967T:p.G323X exonic Abcg3 stopgain SNV uc008ykt.1:c.G967T:p.G323X exonic ENSMUSG00000029299 stopgain SNV ENSMUST00000130644:c.G967T:p.G323X 5qE5 NA NA chr5 105392652 TTCxTGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 93 2 0 21.033125 0.25641 0.02 -0.341853 29 10 801 259 60 60 0 0 CC 13.236215 44 0 1256 0 KEEP - Abcg3 YES B[a]P_3 chr5 107863396 107863396 A C UTR3 Lpcat2b NA NA UTR3 Lpcat2b NA NA UTR3 ENSMUSG00000033794 NA NA 5qE5 NA NA chr5 107863396 AAGxTGT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 63 0 0 16.850131 0.291667 0.02 -0.210398 17 7 435 198 60 60 0 0 AA 9.623913 32 0 871 0 KEEP + Lpcat2b NO B[a]P_3 chr5 108259759 108259759 C G exonic Ube2d2b nonsynonymous SNV NM_001276397:c.C256G:p.L86V exonic Ube2d2 nonsynonymous SNV uc008yng.1:c.C256G:p.L86V exonic ENSMUSG00000063447 nonsynonymous SNV ENSMUST00000072578:c.C256G:p.L86V 5qF NA NA chr5 108259759 TGTxTTG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 238 0 0 66.24501 0.294737 0.02 0.853367 67 28 1898 779 60 60 0 0 CC 33.091214 110 0 3152 0 KEEP + Ube2d2b NO B[a]P_3 chr5 108761957 108761957 G T exonic Pigg nonsynonymous SNV NM_001081234:c.G1563T:p.M521I exonic Pigg nonsynonymous SNV uc008ynv.1:c.G294T:p.M98I exonic ENSMUSG00000029263 nonsynonymous SNV ENSMUST00000118910:c.G1188T:p.M396I 5qF NA NA chr5 108761957 GATxGTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 166 1 0 155.001061 0.753425 0.02 0.957307 18 55 496 1465 60 60 0 0 GG 18.60079 66 1 1870 11 KEEP + Pigg YES B[a]P_3 chr5 110769668 110769668 G T intronic P2rx2 NA NA intronic P2rx2 NA NA intronic ENSMUSG00000029503 NA NA 5qF NA NA chr5 110769668 TAAxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 127 0 0 30.428117 0.234375 0.02 0.938882 49 15 1346 384 60 60 0 0 GG 14.739933 49 0 1390 0 KEEP - P2rx2 YES B[a]P_3 chr5 111122648 111122648 A G intronic Ep400 NA NA intronic Ep400 NA NA intronic ENSMUSG00000029505 NA NA 5qF NA NA chr5 111122648 AGGxGCA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.320751 0.322807 0.993634 31 0 0 11.667722 0.277778 0.02 -0.157832 13 5 354 139 60 60 0 0 AA 3.60965 12 0 337 0 KEEP - Ep400 NO B[a]P_3 chr5 111706520 111706520 G T exonic Ttc28 nonsynonymous SNV NM_001267622:c.G5097T:p.W1699C exonic Ttc28 nonsynonymous SNV uc008yrz.2:c.G5190T:p.W1730C ncRNA_exonic ENSMUSG00000033209 NA NA 5qF NA NA chr5 111706520 CTGxGCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.999859 37 0 0 13.764194 0.375 0.02 -0.140282 10 6 275 155 60 60 0 0 GG 5.414582 18 0 508 0 KEEP + Ttc28 YES B[a]P_3 chr5 111847402 111847402 C G exonic Mn1 nonsynonymous SNV NM_001081235:c.C217G:p.R73G exonic Mn1 nonsynonymous SNV uc008yse.1:c.C217G:p.R73G exonic ENSMUSG00000070576 nonsynonymous SNV ENSMUST00000094463:c.C217G:p.R73G 5qF NA NA chr5 111847402 GCGxGCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 75 0 0 7.767375 0.117647 0.02 -0.297809 30 4 726 112 60 60 0 0 CC 10.208343 34 0 810 0 KEEP + Mn1 NO B[a]P_3 chr5 112783946 112783946 C G exonic Gm6583 nonsynonymous SNV NM_001039228:c.G911C:p.R304P exonic Gm6583 nonsynonymous SNV uc008ytg.1:c.G911C:p.R304P exonic ENSMUSG00000051503 nonsynonymous SNV ENSMUST00000051117:c.G911C:p.R304P 5qF NA NA chr5 112783946 TCGxGGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851947 0.851984 0.999957 71 0 0 28.707619 0.324324 0.02 -0.332924 25 12 589 331 60 60 0 0 CC 7.811792 26 0 651 0 KEEP - Gm6583 NO B[a]P_3 chr5 112901776 112901776 G T exonic Sez6l synonymous SNV NM_001253916:c.C957A:p.L319L exonic Sez6l synonymous SNV uc008ytj.1:c.C840A:p.L280L exonic ENSMUSG00000058153 synonymous SNV ENSMUST00000075387:c.C957A:p.L319L 5qF NA NA chr5 112901776 CCCxAGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 114 2 0 82.126292 0.783784 0.02 -0.324177 8 29 193 767 60 60 0 0 GG 17.427586 58 0 1490 0 KEEP - Sez6l YES B[a]P_3 chr5 113303090 113303090 G T exonic Myo18b synonymous SNV NM_028901:c.C1455A:p.A485A exonic Myo18b synonymous SNV uc008ytr.2:c.C1455A:p.A485A exonic ENSMUSG00000072720 synonymous SNV ENSMUST00000086617:c.C1455A:p.A485A 5qF NA NA chr5 113303090 CCCxGCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 293 0 0 158.007136 0.634409 0.02 0.77332 34 59 890 1564 60 60 0 0 GG 47.102767 157 0 4028 0 KEEP - Myo18b YES B[a]P_3 chr5 113523075 113523075 C G exonic 2900026A02Rik nonsynonymous SNV NM_172884:c.G616C:p.D206H exonic 2900026A02Rik nonsynonymous SNV uc008yua.2:c.G616C:p.D206H exonic ENSMUSG00000051339 nonsynonymous SNV ENSMUST00000050125:c.G616C:p.D206H 5qF NA NA chr5 113523075 CATxTGA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 118 2 0 29.061063 0.26 0.02 1.247998 37 13 1047 353 60 60 0 0 CC 16.53305 55 0 1541 0 KEEP - 2900026A02Rik NO B[a]P_3 chr5 114478436 114478436 A C exonic Svop nonsynonymous SNV NM_026805:c.T1478G:p.V493G exonic Svop nonsynonymous SNV uc008yzb.1:c.T1478G:p.V493G exonic ENSMUSG00000042078 nonsynonymous SNV ENSMUST00000058472:c.T1478G:p.V493G 5qF NA NA chr5 114478436 TAGxCAG A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 73 2 0 18.005005 0.25 0.02 -0.280536 24 8 622 220 60 60 0 0 AA 9.925204 33 0 904 0 KEEP - Svop NO B[a]P_3 chr5 114862134 114862134 C G intronic Ube3b NA NA intronic Ube3b NA NA intronic ENSMUSG00000029577 NA NA 5qF NA NA chr5 114862134 CTGxCCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 138 0 0 54.841377 0.348485 0.02 1.116521 43 23 1176 624 60 60 0 0 CC 16.842518 56 0 1541 0 KEEP + Ube3b NO B[a]P_3 chr5 115085503 115085503 C G exonic Trpv4 nonsynonymous SNV NM_022017:c.G806C:p.R269P exonic Trpv4 nonsynonymous SNV uc008yzv.2:c.G806C:p.R269P exonic ENSMUSG00000014158 nonsynonymous SNV ENSMUST00000112217:c.G806C:p.R269P 5qF NA NA chr5 115085503 CCGxGGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 295 0 0 105.410766 0.373913 0.02 2.382645 72 43 1808 1179 60 60 0 0 CC 42.365776 141 0 3530 0 KEEP - Trpv4 NO B[a]P_3 chr5 116031821 116031821 G T exonic Gcn1l1 synonymous SNV NM_172719:c.G1125T:p.S375S exonic Gcn1l1 synonymous SNV uc008zee.1:c.G1125T:p.S375S exonic ENSMUSG00000041638 synonymous SNV ENSMUST00000064454:c.G1125T:p.S375S 5qF NA NA chr5 116031821 ATCxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 306 3 0 63.66435 0.261261 0.02 2.302366 82 29 2054 775 60 60 0 0 GG 41.168602 137 0 3559 0 KEEP + Gcn1l1 YES B[a]P_3 chr5 118145359 118145359 C A intronic Ksr2 NA NA intronic Ksr2 NA NA intronic ENSMUSG00000061578 NA NA 5qF NA NA chr5 118145359 GACxCCT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 215 0 0 104.224541 0.689655 0.02 0.991776 18 40 496 1008 60 60 0 0 CC 36.004488 120 0 3258 0 KEEP + Ksr2 YES B[a]P_3 chr5 118393881 118393881 C A exonic Nos1 nonsynonymous SNV NM_008712:c.C3655A:p.Q1219K exonic Nos1 nonsynonymous SNV uc008zfy.1:c.C3655A:p.Q1219K exonic ENSMUSG00000029361 nonsynonymous SNV ENSMUST00000111935:c.C3340A:p.Q1114K 5qF NA NA chr5 118393881 ATAxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 141 2 0 72.812793 0.702703 0.02 -0.333198 11 26 310 702 60 60 0 0 CC 20.434526 68 0 1864 0 KEEP + Nos1 YES B[a]P_3 chr5 119043287 119043287 G T intronic Med13l NA NA intronic Med13l NA NA intronic ENSMUSG00000018076 NA NA 5qF NA NA chr5 119043287 GTGxTCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.384723 0.387407 0.993072 31 0 0 13.157452 0.3 0.02 -0.175331 14 6 381 156 60 60 0 0 GG 3.308738 11 0 310 0 KEEP + Med13l YES B[a]P_3 chr5 120291795 120291795 G T exonic Tbx5 synonymous SNV NM_011537:c.G396T:p.P132P exonic Tbx5 synonymous SNV uc008zgz.2:c.G396T:p.P132P exonic ENSMUSG00000018263 synonymous SNV ENSMUST00000018407:c.G396T:p.P132P 5qF NA NA chr5 120291795 GCCxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 174 2 0 75.063336 0.591837 0.02 1.151294 20 29 480 756 60 60 0 0 GG 29.622539 99 0 2445 0 KEEP + Tbx5 YES B[a]P_3 chr5 121132377 121132377 G T exonic Dtx1 stopgain SNV NM_008052:c.C1505A:p.S502X exonic Dtx1 stopgain SNV uc008zht.1:c.C1241A:p.S414X exonic ENSMUSG00000029603 stopgain SNV ENSMUST00000031607:c.C1505A:p.S502X 5qF NA NA chr5 121132377 AGCxAGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 300 2 0 81.980924 0.339623 0.02 2.363504 70 36 1828 943 60 60 0 0 GG 44.775751 149 0 3874 0 KEEP - Dtx1 YES B[a]P_3 chr5 121227567 121227567 G T exonic Oas3 nonsynonymous SNV NM_145226:c.C67A:p.P23T exonic Oas3 nonsynonymous SNV uc008zhz.1:c.C67A:p.P23T exonic ENSMUSG00000032661 nonsynonymous SNV ENSMUST00000044833:c.C67A:p.P23T 5qF NA NA chr5 121227567 CAGxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 93 0 0 64.087339 0.705882 0.02 -0.298062 10 24 274 616 60 60 0 0 GG 14.43856 48 0 1349 0 KEEP - Oas3 YES B[a]P_3 chr5 121313096 121313096 C A intronic Oas1h NA NA intronic Oas1h NA NA intronic ENSMUSG00000001168 NA NA 5qF NA NA chr5 121313096 GGTxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 37 0 0 37.935521 0.866667 0.02 -0.131504 2 13 54 343 60 60 0 0 CC 4.81329 16 0 459 0 KEEP + Oas1h YES B[a]P_3 chr5 123608849 123608849 A G exonic Setd1b nonsynonymous SNV NM_001040398:c.A3863G:p.E1288G exonic mKIAA1076 nonsynonymous SNV uc012edd.1:c.A311G:p.E104G exonic ENSMUSG00000038384 nonsynonymous SNV ENSMUST00000056053:c.A3863G:p.E1288G 5qF NA NA chr5 123608849 CAGxAGA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098977 0.099721 0.99254 19 0 0 7.178901 0.3 0.02 -0.087679 7 3 187 84 60 60 0 0 AA 2.406148 8 0 220 0 KEEP + Setd1b NO B[a]P_3 chr5 123739869 123739869 C A intergenic "Psmd9(dist=39735),Bcl7a(dist=54588)" NA NA intronic Wdr66 NA NA intronic ENSMUSG00000029442 NA NA 5qF NA NA chr5 123739869 CCTxGTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 48 0 0 29.375129 0.785714 0.02 -0.122696 3 11 84 273 60 60 0 0 CC 8.359642 28 0 765 0 KEEP NA Psmd9 YES B[a]P_3 chr5 124951872 124951872 C A exonic Rilpl1 nonsynonymous SNV NM_021430:c.G1053T:p.Q351H exonic Rilpl1 nonsynonymous SNV uc008zpz.1:c.G1053T:p.Q351H exonic ENSMUSG00000029392 nonsynonymous SNV ENSMUST00000062153:c.G1053T:p.Q351H 5qF NA NA chr5 124951872 AGGxTGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 227 1 0 106.150341 0.689655 0.02 1.088879 18 40 508 1027 60 60 0 0 CC 34.298649 118 1 3250 10 KEEP - Rilpl1 YES B[a]P_3 chr5 125304981 125304981 A C intronic Dnah10 NA NA intronic Dnahc10 NA NA intronic ENSMUSG00000038011 NA NA 5qF NA NA chr5 125304981 AGAxCTC A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227586 0.229173 0.993072 30 0 0 6.573497 0.2 0.02 -0.131491 12 3 306 84 60 60 0 0 AA 3.307919 11 0 295 0 KEEP + Dnah10 NO B[a]P_3 chr5 125899591 125899591 C A intronic Dhx37 NA NA intronic Dhx37 NA NA intronic ENSMUSG00000029480 NA NA 5qG1.1 NA NA chr5 125899591 ACCxTCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 189 0 0 49.50346 0.306667 0.02 0.842841 52 23 1438 586 60 60 0 0 CC 25.222528 84 0 2305 0 KEEP - Dhx37 YES B[a]P_3 chr5 128077078 128077078 C G exonic Slc15a4 synonymous SNV NM_133895:c.G1641C:p.T547T exonic Slc15a4 synonymous SNV uc008zsb.1:c.G1641C:p.T547T exonic ENSMUSG00000029416 synonymous SNV ENSMUST00000031367:c.G1641C:p.T547T 5qG1.2 NA NA chr5 128077078 CAGxGTA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 68 0 0 29.384861 0.387097 0.02 -0.27027 19 12 389 326 60 60 0 0 CC 9.31118 31 0 748 0 KEEP - Slc15a4 NO B[a]P_3 chr5 129091332 129091332 G T ncRNA_intronic 5930412G12Rik NA NA ncRNA_intronic 5930412G12Rik NA NA ncRNA_intronic ENSMUSG00000072591 NA NA 5qG1.3 NA NA chr5 129091332 CAGxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.320751 0.322807 0.993634 34 0 0 46.794695 0.888889 0.02 -0.157798 2 16 54 419 60 60 0 0 GG 3.609626 12 0 337 0 KEEP - 5930412G12Rik YES B[a]P_3 chr5 130101474 130101474 C A exonic Mmp17 nonsynonymous SNV NM_011846:c.C614A:p.T205K exonic Mmp17 nonsynonymous SNV uc008zsy.1:c.C614A:p.T205K exonic ENSMUSG00000029436 nonsynonymous SNV ENSMUST00000031390:c.C614A:p.T205K 5qG1.3 NA NA chr5 130101474 GCAxGGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 229 0 0 71.469193 0.279279 0.02 2.22271 80 31 1845 852 60 60 0 0 CC 27.029739 90 0 2182 0 KEEP + Mmp17 YES B[a]P_3 chr5 130577928 130577928 G T exonic Tpst1 nonsynonymous SNV NM_001130476:c.G368T:p.R123L exonic Tpst1 nonsynonymous SNV uc008zuc.2:c.G368T:p.R123L exonic ENSMUSG00000034118 nonsynonymous SNV ENSMUST00000040721:c.G368T:p.R123L 5qG1.3 NA NA chr5 130577928 TCCxCTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 118 0 0 26.167362 0.24 0.02 1.150489 38 12 932 324 60 60 0 0 GG 17.128261 57 0 1436 0 KEEP + Tpst1 YES B[a]P_3 chr5 130628410 130628410 A T exonic Kctd7 nonsynonymous SNV NM_172509:c.A803T:p.D268V exonic Kctd7 nonsynonymous SNV uc008zue.1:c.A803T:p.D268V exonic ENSMUSG00000034110 nonsynonymous SNV ENSMUST00000040616:c.A803T:p.D268V 5qG1.3 NA NA chr5 130628410 GTGxCAA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 202 0 0 59.425334 0.337662 0.02 0.825157 51 26 1302 684 60 60 0 0 AA 29.47227 98 0 2659 0 KEEP + Kctd7 NO B[a]P_3 chr5 134739564 134739564 C A exonic Gtf2i nonsynonymous SNV NM_001080748:c.G1075T:p.V359L exonic Gtf2i nonsynonymous SNV uc008zvm.1:c.G1075T:p.V359L exonic ENSMUSG00000060261 nonsynonymous SNV ENSMUST00000172715:c.G940T:p.V314L 5qG2 NA NA chr5 134739564 CTAxGTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 76 0 0 22.407114 0.322581 0.02 -0.271605 21 10 511 261 60 60 0 0 CC 10.18154 34 0 826 0 KEEP - Gtf2i YES B[a]P_3 chr5 135706198 135706198 G T exonic Baz1b nonsynonymous SNV NM_011714:c.G3243T:p.E1081D exonic Baz1b nonsynonymous SNV uc008zxz.2:c.G3243T:p.E1081D exonic ENSMUSG00000002748 nonsynonymous SNV ENSMUST00000002825:c.G3243T:p.E1081D 5qG2 NA NA chr5 135706198 TGAxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423472 0.423478 0.999988 52 0 0 18.654488 0.380952 0.02 -0.184124 13 8 358 209 60 60 0 0 GG 8.105425 27 0 732 0 KEEP + Baz1b YES B[a]P_3 chr5 136587305 136587305 C G exonic Rasa4 synonymous SNV NM_001039103:c.C2154G:p.P718P exonic Rasa4 synonymous SNV uc008zzu.1:c.C2154G:p.P718P exonic ENSMUSG00000004952 synonymous SNV ENSMUST00000100570:c.C2154G:p.P718P 5qG2 NA NA chr5 136587305 TCCxGAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 79 0 0 10.109062 0.153846 0.02 -0.350159 33 6 811 145 60 60 0 0 CC 10.51545 35 0 875 0 KEEP + Rasa4 NO B[a]P_3 chr5 137463966 137463966 C G intronic Plod3 NA NA intronic Plod3 NA NA intronic ENSMUSG00000004846 NA NA 5qG2 NA NA chr5 137463966 GTGxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 99 1 0 39.550154 0.432432 0.02 -0.359159 21 16 555 429 60 60 0 0 CC 13.834526 46 0 1256 0 KEEP + Plod3 NO B[a]P_3 chr5 138628794 138628794 G T UTR5 Cnpy4 NA NA UTR5 Cnpy4 NA NA UTR5 ENSMUSG00000036968 NA NA 5qG2 NA NA chr5 138628794 TCTxAAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967383 0.967425 0.999957 89 2 0 71.809558 0.571429 0.02 1.141441 21 28 591 730 60 60 0 0 GG 7.822092 26 0 756 0 KEEP + Cnpy4 YES B[a]P_3 chr5 138886036 138886036 G T exonic Zfp157 nonsynonymous SNV NM_028130:c.G60T:p.E20D exonic Zfp157 nonsynonymous SNV uc009afo.2:c.G60T:p.E20D exonic ENSMUSG00000036898 nonsynonymous SNV ENSMUST00000085856:c.G60T:p.E20D 5qG2 NA NA chr5 138886036 GGAxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 277 0 9 137.332925 0.491379 0.02 2.072138 59 57 1599 1451 60 60 0 0 GG 38.778556 129 0 3552 0 KEEP + Zfp157 YES B[a]P_3 chr5 139057723 139057723 C A UTR5 Zfp68 NA NA UTR5 Zfp68 NA NA UTR5 ENSMUSG00000058291 NA NA 5qG2 NA NA chr5 139057723 GAGxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 235 2 0 96.34784 0.47561 0.02 0.878981 43 39 1033 1024 60 60 0 0 CC 36.020344 120 0 2925 0 KEEP - Zfp68 YES B[a]P_3 chr5 140232158 140232158 C A exonic Ints1 nonsynonymous SNV NM_026748:c.G5405T:p.R1802L exonic Ints1 nonsynonymous SNV uc009ahc.2:c.G5399T:p.R1800L exonic ENSMUSG00000029547 nonsynonymous SNV ENSMUST00000072607:c.G5324T:p.R1775L 5qG2 NA NA chr5 140232158 CTAxGGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 129 0 0 49.752383 0.35 0.02 1.07146 39 21 991 566 60 60 0 0 CC 16.53174 55 0 1415 0 KEEP - Ints1 YES B[a]P_3 chr5 140283957 140283957 C G exonic Tmem184a nonsynonymous SNV NM_144914:c.G439C:p.G147R exonic Tmem184a nonsynonymous SNV uc009ahe.2:c.G439C:p.G147R exonic ENSMUSG00000036687 nonsynonymous SNV ENSMUST00000110832:c.G439C:p.G147R 5qG2 NA NA chr5 140283957 CCCxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 110 0 0 12.666171 0.222222 0.02 -0.313909 28 8 750 171 60 60 0 0 CC 15.895865 53 0 1461 0 KEEP - Tmem184a NO B[a]P_3 chr5 140790952 140790952 G A exonic Mad1l1 nonsynonymous SNV NM_010752:c.C142T:p.H48Y exonic Mad1l1 nonsynonymous SNV uc009ahj.1:c.C142T:p.H48Y exonic ENSMUSG00000029554 nonsynonymous SNV ENSMUST00000031534:c.C142T:p.H48Y 5qG2 NA NA chr5 140790952 TGTxATA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.999859 46 0 0 27.119479 0.5 0.02 -0.192888 11 11 310 285 60 60 0 0 GG 5.415007 18 0 518 0 KEEP - Mad1l1 NO B[a]P_3 chr5 141350396 141350396 C A exonic Card11 synonymous SNV NM_175362:c.G3159T:p.L1053L exonic Card11 synonymous SNV uc009aii.1:c.G531T:p.L177L exonic ENSMUSG00000036526 synonymous SNV ENSMUST00000085786:c.G3159T:p.L1053L 5qG2 NA NA chr5 141350396 CAGxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 95 0 0 62.875272 0.545455 0.02 -0.394568 20 24 553 646 60 60 0 0 CC 12.017957 40 0 1109 0 KEEP - Card11 YES B[a]P_3 chr5 144134657 144134657 G A intronic Grid2ip NA NA intronic Grid2ip NA NA intronic ENSMUSG00000010825 NA NA 5qG2 NA NA chr5 144134657 GTCxATC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999998 98 0 0 73.276182 0.5 0.02 0.991691 29 29 743 769 60 60 0 0 GG 9.921609 33 0 890 0 KEEP + Grid2ip NO B[a]P_3 chr5 144143476 144143476 C A exonic Grid2ip synonymous SNV NM_133355:c.C1425A:p.P475P exonic Grid2ip synonymous SNV uc009ake.1:c.C1425A:p.P475P exonic ENSMUSG00000010825 synonymous SNV ENSMUST00000010969:c.C1425A:p.P475P 5qG2 NA NA chr5 144143476 GCCxAGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739567 0.739671 0.999859 58 2 0 46.722704 0.580645 0.02 -0.28056 13 18 357 473 60 60 0 0 CC 5.414271 18 0 503 0 KEEP + Grid2ip YES B[a]P_3 chr5 144383545 144383545 G T intronic Cyth3 NA NA intronic Cyth3 NA NA intronic ENSMUSG00000018001 NA NA 5qG2 NA NA chr5 144383545 GGTxAGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.99986 45 0 0 32.740325 0.684211 0.02 -0.16652 6 13 167 317 60 60 0 0 GG 5.7141 19 0 526 0 KEEP + Cyth3 YES B[a]P_3 chr5 14678694 14678694 C G exonic Pclo nonsynonymous SNV NM_001110796:c.C7565G:p.P2522R exonic Pclo nonsynonymous SNV uc008wmh.2:c.C7565G:p.P2522R exonic ENSMUSG00000061601 nonsynonymous SNV ENSMUST00000030691:c.C7565G:p.P2522R 5qA1 NA NA chr5 14678694 AACxTGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 194 0 0 74.811851 0.386364 0.02 0.923959 54 34 1450 841 60 60 0 0 CC 25.237697 84 0 2319 0 KEEP + Pclo NO B[a]P_3 chr5 147767242 147767242 C G exonic Mtif3 nonsynonymous SNV NM_001256102:c.G759C:p.E253D exonic Mtif3 nonsynonymous SNV uc009anp.1:c.G759C:p.E253D exonic ENSMUSG00000016510 nonsynonymous SNV ENSMUST00000066675:c.G759C:p.E253D 5qG3 NA NA chr5 147767242 GCTxTCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 421 0 0 73.088814 0.202381 0.02 3.612479 134 34 3795 936 60 60 0 0 CC 55.337032 184 0 5261 0 KEEP - Mtif3 NO B[a]P_3 chr5 148485300 148485300 G T intronic Flt1 NA NA intronic Flt1 NA NA intronic ENSMUSG00000029648 NA NA 5qG3 NA NA chr5 148485300 TGTxTTA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 68 0 0 35.453688 0.518519 0.02 -0.245485 13 14 351 369 60 60 0 0 GG 10.226176 34 0 937 0 KEEP - Flt1 YES B[a]P_3 chr5 151157189 151157189 A G exonic Fry nonsynonymous SNV NM_172887:c.A857G:p.D286G exonic Fry nonsynonymous SNV uc009att.1:c.A848G:p.D283G exonic ENSMUSG00000056602 nonsynonymous SNV ENSMUST00000045502:c.A848G:p.D283G 5qG3 NA NA chr5 151157189 AGGxCTT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119538 0.120436 0.99254 22 0 0 12.693881 0.454545 0.02 -0.096427 6 5 153 136 60 60 0 0 AA 2.706496 9 0 242 0 KEEP + Fry NO B[a]P_3 chr5 152450103 152450103 C A exonic Rfc3 nonsynonymous SNV NM_027009:c.G302T:p.G101V exonic Rfc3 nonsynonymous SNV uc009aus.1:c.G302T:p.G101V exonic ENSMUSG00000033970 nonsynonymous SNV ENSMUST00000038131:c.G302T:p.G101V 5qG3 NA NA chr5 152450103 TTCxCCG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 181 2 0 58.572859 0.412698 0.02 0.94878 37 26 998 647 60 60 0 0 CC 25.866992 86 0 2405 0 KEEP - Rfc3 YES B[a]P_3 chr5 20836347 20836347 C A intronic Ccdc146 NA NA intronic Ccdc146 NA NA intronic ENSMUSG00000064280 NA NA 5qA3 NA NA chr5 20836347 GCCxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 92 2 0 19.900948 0.272727 0.02 -0.289181 24 9 606 240 60 60 0 0 CC 13.22138 44 0 1128 0 KEEP - Ccdc146 YES B[a]P_3 chr5 21352148 21352148 T G exonic Slc26a5 nonsynonymous SNV NM_030727:c.A185C:p.Y62S exonic Slc26a5 nonsynonymous SNV uc008wpf.1:c.A185C:p.Y62S exonic ENSMUSG00000029015 nonsynonymous SNV ENSMUST00000127975:c.A185C:p.Y62S 5qA3 NA NA chr5 21352148 ATGxAAA T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 82 0 0 62.203139 0.777778 0.02 -0.254276 6 21 152 584 60 60 0 0 TT 12.92513 43 0 1134 0 KEEP - Slc26a5 NO B[a]P_3 chr5 21461019 21461019 G T exonic Reln unknown UNKNOWN exonic Reln synonymous SNV uc008wpi.1:c.C6369A:p.A2123A exonic ENSMUSG00000042453 synonymous SNV ENSMUST00000062372:c.C6369A:p.A2123A 5qA3 NA NA chr5 21461019 AATxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 55 0 0 30.426396 0.6875 0.02 -0.140292 5 11 142 295 60 60 0 0 GG 9.31749 31 0 856 0 KEEP - Reln YES B[a]P_3 chr5 21546193 21546193 C A exonic Reln unknown UNKNOWN exonic Reln nonsynonymous SNV uc008wpi.1:c.G2234T:p.G745V exonic ENSMUSG00000042453 nonsynonymous SNV ENSMUST00000062372:c.G2234T:p.G745V 5qA3 NA NA chr5 21546193 TTAxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.851984 0.851984 1 131 2 0 36.004645 0.405405 0.02 -0.333175 22 15 602 397 60 60 0 0 CC 21.620001 72 0 1960 0 KEEP - Reln YES B[a]P_3 chr5 21849984 21849984 G T intronic Reln NA NA intronic Reln NA NA intronic ENSMUSG00000042453 NA NA 5qA3 NA NA chr5 21849984 GCCxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 270 3 0 72.060104 0.306931 0.02 2.309775 70 31 1670 843 60 60 0 0 GG 38.690124 129 0 3108 0 KEEP - Reln YES B[a]P_3 chr5 22608339 22608339 G C exonic Lhfpl3 synonymous SNV NM_001081231:c.G543C:p.S181S exonic Lhfpl3 synonymous SNV uc008wpv.2:c.G543C:p.S181S exonic ENSMUSG00000058361 synonymous SNV ENSMUST00000073678:c.G543C:p.S181S 5qA3 NA NA chr5 22608339 CTCxGTC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 151 3 0 18.820045 0.204082 0.02 -0.428872 39 10 900 248 60 60 0 0 GG 21.938021 73 0 1870 0 KEEP + Lhfpl3 NO B[a]P_3 chr5 23830884 23830884 G T exonic Kcnh2 synonymous SNV NM_013569:c.C2041A:p.R681R exonic Kcnh2 synonymous SNV uc008wrb.1:c.C1015A:p.R339R exonic ENSMUSG00000038319 synonymous SNV ENSMUST00000115098:c.C1015A:p.R339R 5qA3 NA NA chr5 23830884 CCCxGAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 102 0 0 32.672252 0.333333 0.02 -0.376897 28 14 716 376 60 60 0 0 GG 12.925692 43 0 1130 0 KEEP - Kcnh2 YES B[a]P_3 chr5 23897477 23897477 T A exonic Atg9b synonymous SNV NM_001002897:c.A258T:p.P86P exonic Atg9b synonymous SNV uc008wrf.1:c.A258T:p.P86P exonic ENSMUSG00000038295 synonymous SNV ENSMUST00000059401:c.A258T:p.P86P 5qA3 NA NA chr5 23897477 GTGxGGA T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099162 0.099721 0.994391 26 0 0 12.998969 0.555556 0.02 -0.087669 4 5 103 133 60 60 0 0 TT 3.908085 13 0 344 0 KEEP - Atg9b NO B[a]P_3 chr5 24805888 24805888 C A exonic Kmt2c nonsynonymous SNV NM_001081383:c.G10239T:p.M3413I exonic Mll3 nonsynonymous SNV uc008wsu.1:c.G408T:p.M136I exonic ENSMUSG00000038056 nonsynonymous SNV ENSMUST00000174734:c.G6T:p.M2I 5qA3 NA NA chr5 24805888 TTGxATC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.98195 0.981955 0.999994 114 0 0 111.212242 0.714286 0.02 1.097601 16 40 439 1067 60 60 0 0 CC 13.235587 44 0 1245 0 KEEP - Kmt2c YES B[a]P_3 chr5 24811759 24811759 C A exonic Kmt2c nonsynonymous SNV NM_001081383:c.G9403T:p.G3135C exonic Mll3 nonsynonymous SNV uc008wsv.1:c.G9403T:p.G3135C exonic ENSMUSG00000038056 nonsynonymous SNV ENSMUST00000088253:c.G5305T:p.G1769C 5qA3 NA NA chr5 24811759 GGCxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 110 0 0 58.157955 0.677419 0.02 -0.280436 10 21 228 566 60 60 0 0 CC 19.193495 64 0 1617 0 KEEP - Kmt2c YES B[a]P_3 chr5 28493747 28493747 G C intronic En2 NA NA intronic En2 NA NA intronic ENSMUSG00000039095 NA NA 5qB1 NA NA chr5 28493747 GCCxCTG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 32 0 0 41.334366 0.823529 0.02 -0.149046 3 14 78 381 60 60 0 0 GG 4.20899 14 0 368 0 KEEP + En2 NO B[a]P_3 chr5 30469259 30469259 C A exonic Hadha nonsynonymous SNV NM_178878:c.G573T:p.M191I exonic Hadha nonsynonymous SNV uc008wvc.1:c.G573T:p.M191I exonic ENSMUSG00000025745 nonsynonymous SNV ENSMUST00000156859:c.G573T:p.M191I 5qB1 NA NA chr5 30469259 CACxATT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.259304 0.260965 0.993634 33 0 0 10.164336 0.3125 0.02 -0.140147 11 5 305 121 60 60 0 0 CC 3.609969 12 0 344 0 KEEP - Hadha YES B[a]P_3 chr5 30969372 30969372 G T UTR5 Cenpa NA NA ncRNA_exonic Cenp-a NA NA UTR5 ENSMUSG00000029177 NA NA 5qB1 NA NA chr5 30969372 AAGxCGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.99986 34 0 0 25.020709 0.818182 0.02 -0.096427 2 9 56 230 60 60 0 0 GG 5.714839 19 0 528 0 KEEP + Cenpa YES B[a]P_3 chr5 31247730 31247730 C A splicing Cgref1(NM_026770:exon2:c.118+1G>T) NA NA splicing Cgref1(uc008wwo.1:exon2:c.118+1G>T) NA NA splicing ENSMUSG00000029161(ENSMUST00000031051:exon2:c.118+1G>T) NA NA 5qB1 NA NA chr5 31247730 CCAxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019833 0.019982 0.99254 14 0 0 12.103417 1 0.02 -0.035061 0 4 0 102 0 60 0 0 CC 2.706722 9 0 245 0 KEEP - Cgref1 YES B[a]P_3 chr5 33187090 33187090 T G exonic Prr14l nonsynonymous SNV NM_194340:c.A74C:p.Y25S exonic C330019G07Rik nonsynonymous SNV uc008wzy.2:c.A74C:p.Y25S exonic ENSMUSG00000054280 nonsynonymous SNV ENSMUST00000120129:c.A74C:p.Y25S 5qB1 NA NA chr5 33187090 GAGxACA T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 75 0 3 64.094653 0.657143 0.02 -0.306831 12 23 300 629 60 60 0 0 TT 9.020881 30 0 794 0 KEEP - Prr14l NO B[a]P_3 chr5 33593598 33593598 T A exonic Ctbp1 nonsynonymous SNV NM_001198859:c.A671T:p.Q224L exonic Ctbp1 nonsynonymous SNV uc008xal.2:c.A449T:p.Q150L exonic ENSMUSG00000037373 nonsynonymous SNV ENSMUST00000079746:c.A671T:p.Q224L 5qB1 NA NA chr5 33593598 TCCxGCA T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 69 0 0 30.978729 0.382353 0.02 -0.306853 21 13 559 346 60 60 0 0 TT 8.120971 27 0 748 0 KEEP - Ctbp1 NO B[a]P_3 chr5 34278669 34278669 C A intronic Nelfa NA NA intronic Whsc2 NA NA intronic ENSMUSG00000029111 NA NA 5qB2 NA NA chr5 34278669 CGTxCTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 59 0 0 12.183906 0.333333 0.02 -0.166552 12 6 336 143 60 60 0 0 CC 8.362144 28 0 653 0 KEEP - Nelfa YES B[a]P_3 chr5 36496574 36496574 A T intronic Sorcs2 NA NA intronic Sorcs2 NA NA intronic ENSMUSG00000029093 NA NA 5qB3 NA NA chr5 36496574 CCTxTGG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760795 0.760887 0.999879 64 0 0 17.483645 0.242424 0.02 -0.289229 25 8 617 216 60 60 0 0 AA 6.615311 22 0 583 0 KEEP - Sorcs2 NO B[a]P_3 chr5 36862013 36862013 C A exonic Tbc1d14 nonsynonymous SNV NM_001113364:c.G339T:p.K113N exonic Tbc1d14 nonsynonymous SNV uc008xes.2:c.G339T:p.K113N exonic ENSMUSG00000029192 nonsynonymous SNV ENSMUST00000150813:c.G339T:p.K113N 5qB3 NA NA chr5 36862013 AACxTTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 172 2 0 51.645633 0.396552 0.02 0.991499 35 23 993 576 60 60 0 0 CC 26.757214 89 0 2522 0 KEEP - Tbc1d14 YES B[a]P_3 chr5 37508801 37508801 T G exonic Jakmip1 nonsynonymous SNV NM_178394:c.T1423G:p.L475V exonic Jakmip1 nonsynonymous SNV uc008xfj.2:c.T1423G:p.L475V exonic ENSMUSG00000063646 nonsynonymous SNV ENSMUST00000174629:c.T868G:p.L290V 5qB3 NA NA chr5 37508801 GACxTAG T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851947 0.851984 0.999957 74 0 0 35.790975 0.421053 0.02 -0.33307 22 16 589 394 60 60 0 0 TT 7.785408 26 0 700 0 KEEP + Jakmip1 NO B[a]P_3 chr5 38020180 38020180 C A exonic Stk32b nonsynonymous SNV NM_022416:c.G178T:p.V60L exonic Stk32b nonsynonymous SNV uc008xft.2:c.G178T:p.V60L exonic ENSMUSG00000029123 nonsynonymous SNV ENSMUST00000094836:c.G178T:p.V60L 5qB3 NA NA chr5 38020180 CCAxACA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 79 0 0 18.042837 0.285714 0.02 -0.245511 20 8 549 215 60 60 0 0 CC 11.429928 38 0 1064 0 KEEP - Stk32b YES B[a]P_3 chr5 42209428 42209428 C G exonic Bod1l synonymous SNV NM_001081422:c.G5781C:p.V1927V exonic Bod1l synonymous SNV uc008xhd.2:c.G3537C:p.V1179V exonic ENSMUSG00000061755 synonymous SNV ENSMUST00000166922:c.G1071C:p.V357V 5qB3 NA NA chr5 42209428 TTCxACA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 242 0 0 54.939469 0.252174 0.02 2.382368 86 29 2366 693 60 60 0 0 CC 30.07157 100 0 2812 0 KEEP - Bod1l NO B[a]P_3 chr5 52929348 52929348 G T exonic Lgi2 nonsynonymous SNV NM_144945:c.C1507A:p.Q503K exonic Lgi2 nonsynonymous SNV uc008xkm.1:c.C1507A:p.Q503K exonic ENSMUSG00000039252 nonsynonymous SNV ENSMUST00000039750:c.C1507A:p.Q503K 5qC1 NA NA chr5 52929348 ACTxCTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 64 0 0 15.748372 0.291667 0.02 -0.210455 17 7 481 187 60 60 0 0 GG 9.015725 30 0 849 0 KEEP - Lgi2 YES B[a]P_3 chr5 64316093 64316093 C G exonic Rell1 nonsynonymous SNV NM_145923:c.G703C:p.E235Q exonic Rell1 nonsynonymous SNV uc008xmh.1:c.G703C:p.E235Q exonic ENSMUSG00000047881 nonsynonymous SNV ENSMUST00000154169:c.G703C:p.E235Q 5qC3.1 NA NA chr5 64316093 GCTxCAC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 216 0 0 31.962944 0.202703 0.02 0.9397 59 15 1636 410 60 60 0 0 CC 30.073551 100 0 2833 0 KEEP - Rell1 NO B[a]P_3 chr5 65554045 65554045 G T exonic Klhl5 nonsynonymous SNV NM_175174:c.G1702T:p.G568C exonic Klhl5 nonsynonymous SNV uc008xna.2:c.G1282T:p.G428C exonic ENSMUSG00000054920 nonsynonymous SNV ENSMUST00000031089:c.G1519T:p.G507C 5qC3.1 NA NA chr5 65554045 GGTxGTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 202 0 0 147.489803 0.764706 0.02 1.001293 16 52 428 1388 60 60 0 0 GG 28.514907 95 0 2676 0 KEEP + Klhl5 YES B[a]P_3 chr5 65739986 65739986 G T exonic Klb synonymous SNV NM_031180:c.G336T:p.R112R exonic Klb synonymous SNV uc008xnn.1:c.G336T:p.R112R exonic ENSMUSG00000029195 synonymous SNV ENSMUST00000031096:c.G336T:p.R112R 5qC3.1 NA NA chr5 65739986 TCGxTAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 87 0 0 20.723543 0.222222 0.02 -0.394558 35 10 954 263 60 60 0 0 GG 11.127914 37 0 1010 0 KEEP + Klb YES B[a]P_3 chr5 66667802 66667802 C T exonic Nsun7 synonymous SNV NM_027602:c.C555T:p.H185H exonic Nsun7 synonymous SNV uc008xou.1:c.C555T:p.H185H exonic ENSMUSG00000029206 synonymous SNV ENSMUST00000031109:c.C555T:p.H185H 5qC3.1 NA NA chr5 66667802 ACAxGAC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 93 0 0 52.26314 0.552632 0.02 -0.341778 17 21 423 536 60 60 0 0 CC 12.619939 42 0 1041 0 KEEP + Nsun7 NO B[a]P_3 chr5 66667803 66667803 G T exonic Nsun7 nonsynonymous SNV NM_027602:c.G556T:p.D186Y exonic Nsun7 nonsynonymous SNV uc008xou.1:c.G556T:p.D186Y exonic ENSMUSG00000029206 nonsynonymous SNV ENSMUST00000031109:c.G556T:p.D186Y 5qC3.1 NA NA chr5 66667803 CACxACG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 90 0 0 53.467989 0.552632 0.02 -0.341805 17 21 422 548 60 60 0 0 GG 12.323356 41 0 1076 0 KEEP + Nsun7 YES B[a]P_3 chr5 66702326 66702326 C A intronic Apbb2 NA NA intronic Apbb2 NA NA intronic ENSMUSG00000029207 NA NA 5qC3.1 NA NA chr5 66702326 CTAxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 151 0 0 51.851129 0.333333 0.02 1.018622 44 22 1221 596 60 60 0 0 CC 20.15524 67 0 1915 0 KEEP - Apbb2 YES B[a]P_3 chr5 66754034 66754034 G T exonic Apbb2 nonsynonymous SNV NM_001201414:c.C1389A:p.D463E exonic Apbb2 nonsynonymous SNV uc008xoz.2:c.C1389A:p.D463E exonic ENSMUSG00000029207 nonsynonymous SNV ENSMUST00000068206:c.C1452A:p.D484E 5qC3.1 NA NA chr5 66754034 GGGxTCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 75 0 0 24.102196 0.34375 0.02 -0.280538 21 11 577 278 60 60 0 0 GG 9.910799 33 0 887 0 KEEP - Apbb2 YES B[a]P_3 chr5 66754035 66754035 T C exonic Apbb2 nonsynonymous SNV NM_001201414:c.A1388G:p.D463G exonic Apbb2 nonsynonymous SNV uc008xoz.2:c.A1388G:p.D463G exonic ENSMUSG00000029207 nonsynonymous SNV ENSMUST00000068206:c.A1451G:p.D484G 5qC3.1 NA NA chr5 66754035 GGGxCCA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 75 0 0 27.192994 0.354839 0.02 -0.271788 20 11 522 307 60 60 0 0 TT 9.922694 33 0 884 0 KEEP - Apbb2 NO B[a]P_3 chr5 74049027 74049027 C A exonic Spata18 nonsynonymous SNV NM_178387:c.C239A:p.P80H exonic Spata18 nonsynonymous SNV uc008xtc.2:c.C239A:p.P80H exonic ENSMUSG00000029155 nonsynonymous SNV ENSMUST00000041422:c.C239A:p.P80H 5qC3.3 NA NA chr5 74049027 TGCxCTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 113 1 0 72.4857 0.583333 0.02 -0.420836 20 28 548 733 60 60 0 0 CC 15.913928 53 0 1443 0 KEEP + Spata18 YES B[a]P_3 chr5 75407287 75407287 C A exonic Chic2 nonsynonymous SNV NM_028850:c.G416T:p.R139M exonic Chic2 nonsynonymous SNV uc008xtw.1:c.G416T:p.R139M exonic ENSMUSG00000029229 nonsynonymous SNV ENSMUST00000075452:c.G416T:p.R139M 5qC3.3 NA NA chr5 75407287 TTCxTTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 108 0 0 30.844978 0.341463 0.02 -0.359483 27 14 760 356 60 60 0 0 CC 15.635306 52 0 1466 0 KEEP - Chic2 YES B[a]P_3 chr5 77940631 77940631 C A ncRNA_exonic Pea15b NA NA ncRNA_exonic Pea15b NA NA ncRNA_exonic ENSMUSG00000047652 NA NA 5qC3.3 NA NA chr5 77940631 CTCxCGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 193 0 0 43.83653 0.222222 0.02 0.632196 77 22 2105 561 60 60 0 0 CC 24.047857 80 0 2216 0 KEEP - Pea15b YES B[a]P_3 chr5 87333268 87333268 G T intronic Ugt2b34 NA NA intronic Ugt2b34 NA NA intronic ENSMUSG00000029260 NA NA 5qE1 NA NA chr5 87333268 AACxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999859 29 0 0 16.87751 0.666667 0.02 -0.078866 3 6 64 165 60 60 0 0 GG 5.397424 18 0 405 0 KEEP - Ugt2b34 YES B[a]P_3 chr5 92688542 92688542 A T intronic Naaa NA NA intronic "NAAA,Naaa" NA NA intronic ENSMUSG00000029413 NA NA 5qE2 NA NA chr5 92688542 CAAxTTC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 128 0 0 42.051715 0.351852 0.02 1.026625 35 19 924 482 60 60 0 0 AA 16.542234 55 0 1515 0 KEEP - Naaa NO B[a]P_3 chr5 92730858 92730858 C T exonic Sdad1 nonsynonymous SNV NM_172713:c.G691A:p.D231N exonic Sdad1 nonsynonymous SNV uc008yct.1:c.G691A:p.D231N exonic ENSMUSG00000029415 nonsynonymous SNV ENSMUST00000031364:c.G691A:p.D231N 5qE2 NA NA chr5 92730858 TGTxCTG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.454342 0.457757 0.99254 35 0 0 10.167003 0.227273 0.02 -0.192889 17 5 470 129 60 60 0 0 CC 2.706983 9 0 251 0 KEEP - Sdad1 NO B[a]P_3 chr5 92756933 92756933 G A intronic Cxcl9 NA NA intronic Cxcl9 NA NA intronic ENSMUSG00000029417 NA NA 5qE2 NA NA chr5 92756933 CCTxAGA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 56 0 0 18.396813 0.421053 0.02 -0.166582 11 8 309 202 60 60 0 0 GG 9.624912 32 0 916 0 KEEP - Cxcl9 NO B[a]P_3 chr5 92821662 92821662 G T exonic Art3 synonymous SNV NM_181728:c.G237T:p.A79A exonic Art3 synonymous SNV uc008ydd.2:c.G237T:p.A79A exonic ENSMUSG00000034842 synonymous SNV ENSMUST00000117108:c.G237T:p.A79A 5qE2 NA NA chr5 92821662 AGCxCGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 119 0 0 56.359851 0.396552 0.02 1.088994 35 23 877 623 60 60 0 0 GG 14.125399 47 0 1195 0 KEEP + Art3 YES B[a]P_3 chr5 98775413 98775413 C A intronic 1700007G11Rik NA NA intronic 1700007G11Rik NA NA intronic ENSMUSG00000057816 NA NA 5qE3 NA NA chr5 98775413 TTAxAGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.888561 0.888875 0.999646 90 0 0 32.847069 0.341463 0.02 -0.359512 27 14 751 376 60 60 0 0 CC 8.722503 29 0 817 0 KEEP + 1700007G11Rik YES B[a]P_3 chr6 101101094 101101094 C A exonic Pdzrn3 synonymous SNV NM_018884:c.G2604T:p.A868A exonic Pdzrn3 synonymous SNV uc012eps.1:c.G2505T:p.A835A exonic ENSMUSG00000035357 synonymous SNV ENSMUST00000075994:c.G2604T:p.A868A 6qD3 NA NA chr6 101101094 GTGxGCG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 131 0 0 95.445182 0.660377 0.02 1.124074 18 35 428 935 60 60 0 0 CC 20.97598 70 0 1643 0 KEEP - Pdzrn3 YES B[a]P_3 chr6 101101617 101101617 C A exonic Pdzrn3 nonsynonymous SNV NM_018884:c.G2081T:p.R694L exonic Pdzrn3 nonsynonymous SNV uc012eps.1:c.G1982T:p.R661L exonic ENSMUSG00000035357 nonsynonymous SNV ENSMUST00000075994:c.G2081T:p.R694L 6qD3 NA NA chr6 101101617 CTGxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 103 1 0 93.266779 0.62963 0.02 1.124062 20 34 468 925 60 60 0 0 CC 12.846896 43 0 984 0 KEEP - Pdzrn3 YES B[a]P_3 chr6 101304397 101304397 C G exonic Pdzrn3 nonsynonymous SNV NM_018884:c.G909C:p.R303S exonic "Pdzrn3,Semcap3" nonsynonymous SNV uc009dcd.2:c.G909C:p.R303S exonic ENSMUSG00000035357 nonsynonymous SNV ENSMUST00000075994:c.G909C:p.R303S 6qD3 NA NA chr6 101304397 AATxCTG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 64 0 0 16.263354 0.318182 0.02 -0.192891 15 7 413 189 60 60 0 0 CC 10.228011 34 0 970 0 KEEP - Pdzrn3 NO B[a]P_3 chr6 113445751 113445751 C G exonic Prrt3 nonsynonymous SNV NM_172487:c.G1450C:p.A484P exonic Prrt3 nonsynonymous SNV uc009dgp.1:c.G1450C:p.A484P exonic ENSMUSG00000045009 nonsynonymous SNV ENSMUST00000101059:c.G1450C:p.A484P 6qE3 NA NA chr6 113445751 CTGxCAC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 98 0 0 29.655227 0.288889 0.02 -0.39459 32 13 889 352 60 60 0 0 CC 12.93038 43 0 1185 0 KEEP - Prrt3 NO B[a]P_3 chr6 113739876 113739876 G T exonic Atp2b2 synonymous SNV NM_001036684:c.C1395A:p.T465T exonic Atp2b2 synonymous SNV uc009dhn.1:c.C1395A:p.T465T exonic ENSMUSG00000030302 synonymous SNV ENSMUST00000089002:c.C1395A:p.T465T 6qE3 NA NA chr6 113739876 CACxGTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 144 2 0 49.944824 0.355932 0.02 1.178231 38 21 934 566 60 60 0 0 GG 18.333038 61 0 1576 0 KEEP - Atp2b2 YES B[a]P_3 chr6 115865908 115865908 G C intronic Ift122 NA NA exonic Ift122 synonymous SNV uc009djj.2:c.G9C:p.V3V intronic ENSMUSG00000030323 NA NA 6qE3 NA NA chr6 115865908 TGTxCTT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 45 0 0 25.465387 0.4 0.02 -0.219156 15 10 402 280 60 60 0 0 GG 5.413674 18 0 504 0 KEEP + Ift122 NO B[a]P_3 chr6 116264820 116264820 G C exonic Zfand4 nonsynonymous SNV NM_001081317:c.G1753C:p.A585P exonic Anubl1 nonsynonymous SNV uc012eqw.1:c.G1015C:p.A339P exonic ENSMUSG00000042213 nonsynonymous SNV ENSMUST00000069169:c.G1015C:p.A339P 6qE3 NA NA chr6 116264820 ATGxCTA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 66 0 0 17.215139 0.388889 0.02 -0.157829 11 7 300 191 60 60 0 0 GG 11.409637 38 0 1036 0 KEEP + Zfand4 NO B[a]P_3 chr6 118361554 118361554 G A exonic Bms1 synonymous SNV NM_194339:c.C1041T:p.Y347Y exonic Bms1 synonymous SNV uc012erc.1:c.C378T:p.Y126Y exonic ENSMUSG00000030138 synonymous SNV ENSMUST00000032237:c.C1041T:p.Y347Y 6qF1 NA NA chr6 118361554 GTCxTAC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 67 0 0 17.189618 0.333333 0.02 -0.210037 16 8 400 200 60 60 0 0 GG 9.015703 30 0 764 0 KEEP - Bms1 NO B[a]P_3 chr6 118564029 118564029 T A exonic Cacna1c synonymous SNV NM_001159533:c.A4299T:p.P1433P exonic Cacna1c synonymous SNV uc012erg.1:c.A1896T:p.P632P exonic ENSMUSG00000051331 synonymous SNV ENSMUST00000112825:c.A3489T:p.P1163P 6qF1 NA NA chr6 118564029 CTCxGGG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139048 0.139832 0.994391 28 0 0 21.996187 0.666667 0.02 -0.10521 4 8 106 215 60 60 0 0 TT 3.909927 13 0 356 0 KEEP - Cacna1c NO B[a]P_3 chr6 119383543 119383543 C A exonic Wnt5b nonsynonymous SNV NM_001271757:c.G953T:p.C318F exonic Wnt5b nonsynonymous SNV uc009dmg.2:c.G992T:p.C331F exonic ENSMUSG00000030170 nonsynonymous SNV ENSMUST00000117171:c.G953T:p.C318F 6qF1 NA NA chr6 119383543 CAGxACA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 135 0 0 108.026376 0.722222 0.02 1.026562 15 39 417 1033 60 60 0 0 CC 18.048537 60 0 1696 0 KEEP - Wnt5b YES B[a]P_3 chr6 120314484 120314484 G A UTR5 Kdm5a NA NA UTR5 Kdm5a NA NA UTR5 ENSMUSG00000030180 NA NA 6qF1 NA NA chr6 120314484 GGCxCTC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 60 0 0 12.760159 0.3 0.02 -0.175184 14 6 325 152 60 60 0 0 GG 8.412313 28 0 691 0 KEEP + Kdm5a NO B[a]P_3 chr6 120442717 120442717 C A exonic Cecr6 nonsynonymous SNV NM_033567:c.G1056T:p.M352I exonic Cecr6 nonsynonymous SNV uc009dnk.1:c.G1056T:p.M352I ncRNA_intronic ENSMUSG00000072800 NA NA 6qF1 NA NA chr6 120442717 CGCxATG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161897 0.162467 0.99649 33 0 0 21.996092 0.666667 0.02 -0.113976 4 8 108 215 60 60 0 0 CC 4.512385 15 0 429 0 KEEP - Cecr6 YES B[a]P_3 chr6 121176125 121176125 C T downstream Tuba8 NA NA downstream Tuba8 NA NA ncRNA_exonic ENSMUSG00000086527 NA NA 6qF1 NA NA chr6 121176125 CCTxTTT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 61 0 0 48.211461 0.6 0.02 -0.263049 12 18 335 484 60 60 0 0 CC 9.024486 30 0 853 0 KEEP + Tuba8 NO B[a]P_3 chr6 121202592 121202592 C G intronic Usp18 NA NA intronic Usp18 NA NA intronic ENSMUSG00000030107 NA NA 6qF1 NA NA chr6 121202592 GGTxATT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076761 0.077336 0.99257 18 0 0 20.867458 0.777778 0.02 -0.078918 2 7 53 196 60 60 0 0 CC 2.406676 8 0 230 0 KEEP + Usp18 NO B[a]P_3 chr6 121610827 121610827 C A intronic A2m NA NA intronic A2m NA NA intronic ENSMUSG00000030111 NA NA 6qF1 NA NA chr6 121610827 CCTxCTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 60 0 0 21.838051 0.37037 0.02 -0.236716 17 10 475 248 60 60 0 0 CC 8.421072 28 0 780 0 KEEP + A2m YES B[a]P_3 chr6 121799741 121799741 G T splicing Mug1(NM_008645:exon6:c.505-1G>T) NA NA splicing Mug1(uc009dor.1:exon6:c.505-1G>T) NA NA splicing ENSMUSG00000059908(ENSMUST00000032228:exon6:c.505-1G>T) NA NA 6qF1 "Score=0.919883;Name=No.94032,chr6:122085334" NA chr6 121799741 ACAxGAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 201 0 5 118.802048 0.621622 0.02 0.93987 28 46 764 1182 60 60 0 0 GG 27.618498 96 1 2756 11 KEEP + Mug1 YES B[a]P_3 chr6 122193789 122193789 C A ncRNA_exonic Mug-ps1 NA NA exonic MUG3 nonsynonymous SNV uc012esd.1:c.C982A:p.L328I intergenic "ENSMUSG00000071204(dist=91755),ENSMUSG00000030114(dist=26825)" NA NA 6qF1 "Score=0.920219;Name=No.94041,chr6:122000030" NA chr6 122193789 GCCxTTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 116 1 0 76.058805 0.630435 0.02 -0.403281 17 29 464 754 60 60 0 0 CC 15.641566 52 0 1465 0 KEEP + Mug-ps1 YES B[a]P_3 chr6 123018534 123018534 A T exonic Clec4b1 synonymous SNV NM_027218:c.A195T:p.S65S exonic Clec4b1 synonymous SNV uc009dpy.2:c.A195T:p.S65S exonic ENSMUSG00000030147 synonymous SNV ENSMUST00000077228:c.A195T:p.S65S 6qF2 "Score=0.894941;Name=No.94045,chr6:123079817" NA chr6 123018534 ATCxGCA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 290 0 0 48.126737 0.239583 0.02 0.746955 73 23 1976 601 60 60 0 0 AA 47.21656 157 0 4361 0 KEEP + Clec4b1 NO B[a]P_3 chr6 124388474 124388474 C A intronic Clstn3 NA NA intronic Clstn3 NA NA intronic ENSMUSG00000008153 NA NA 6qF2 NA NA chr6 124388474 AGTxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 94 0 0 37.124436 0.5 0.02 -0.262836 15 15 348 390 60 60 0 0 CC 14.716621 49 0 1178 0 KEEP - Clstn3 YES B[a]P_3 chr6 124462764 124462764 C A UTR5 C1ra NA NA UTR5 C1ra NA NA UTR5 ENSMUSG00000055172 NA NA 6qF2 "Score=0.935649;Name=No.94061,chr6:124516760" NA chr6 124462764 GTGxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 119 0 0 73.49112 0.636364 0.02 -0.385529 16 28 437 727 60 60 0 0 CC 18.621783 62 0 1691 0 KEEP + C1ra YES B[a]P_3 chr6 125313395 125313395 G T exonic Plekhg6 nonsynonymous SNV NM_198604:c.C2019A:p.D673E exonic Plekhg6 nonsynonymous SNV uc009dum.1:c.C2019A:p.D673E exonic ENSMUSG00000038167 nonsynonymous SNV ENSMUST00000042647:c.C2019A:p.D673E 6qF3 NA NA chr6 125313395 CTCxTCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 129 2 0 28.540476 0.254902 0.02 1.150633 38 13 882 349 60 60 0 0 GG 18.03132 60 0 1524 0 KEEP - Plekhg6 YES B[a]P_3 chr6 128424294 128424294 C A ncRNA_exonic Gm10069 NA NA ncRNA_exonic Gm10069 NA NA ncRNA_exonic ENSMUSG00000059659 NA NA 6qF3 NA NA chr6 128424294 ACCxGAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.99986 50 0 0 42.503205 0.592593 0.02 -0.236706 11 16 292 428 60 60 0 0 CC 5.709518 19 0 480 0 KEEP + Gm10069 YES B[a]P_3 chr6 131333564 131333564 C T intronic Ybx3 NA NA intronic Csda NA NA intronic ENSMUSG00000030189 NA NA 6qF3 NA NA chr6 131333564 AGGxAGA C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 92 0 0 57.094149 0.621622 0.02 -0.324324 14 23 385 568 60 60 0 0 CC 13.837573 46 0 1313 0 KEEP - Ybx3 NO B[a]P_3 chr6 132607200 132607200 A T exonic Tas2r120 nonsynonymous SNV NM_207023:c.A226T:p.N76Y exonic Tas2r120 nonsynonymous SNV uc009eji.1:c.A226T:p.N76Y exonic ENSMUSG00000059382 nonsynonymous SNV ENSMUST00000071707:c.A226T:p.N76Y 6qG1 NA NA chr6 132607200 GACxATT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 120 2 0 42.429387 0.4 0.02 -0.394502 27 18 724 470 60 60 0 0 AA 15.94157 53 0 1473 0 KEEP + Tas2r120 NO B[a]P_3 chr6 137005067 137005067 G A intronic Rerg NA NA intronic Rerg NA NA intronic ENSMUSG00000030222 NA NA 6qG1 NA NA chr6 137005067 GTGxGCA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 96 0 0 13.819381 0.25 0.02 -0.244374 21 7 555 173 60 60 0 0 GG 15.941939 53 0 1478 0 KEEP - Rerg NO B[a]P_3 chr6 139441732 139441732 C A UTR3 Rergl NA NA UTR3 Rergl NA NA UTR3 ENSMUSG00000092164 NA NA 6qG2 NA NA chr6 139441732 TGTxTAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291368 0.292001 0.997832 40 0 0 18.606905 0.470588 0.02 -0.149037 9 8 253 199 60 60 0 0 CC 3.698649 15 1 436 7 KEEP - Rergl YES B[a]P_3 chr6 146961006 146961006 T A exonic Ppfibp1 nonsynonymous SNV NM_026221:c.T1307A:p.L436H exonic Ppfibp1 nonsynonymous SNV uc009esq.1:c.T479A:p.L160H exonic ENSMUSG00000016487 nonsynonymous SNV ENSMUST00000136837:c.T71A:p.L24H 6qG3 NA NA chr6 146961006 GCCxTGG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 118 0 0 21.434733 0.277778 0.02 -0.324407 26 10 714 259 60 60 0 0 TT 18.943447 63 0 1751 0 KEEP + Ppfibp1 NO B[a]P_3 chr6 146961008 146961008 G T exonic Ppfibp1 stopgain SNV NM_026221:c.G1309T:p.G437X exonic Ppfibp1 stopgain SNV uc009esq.1:c.G481T:p.G161X exonic ENSMUSG00000016487 stopgain SNV ENSMUST00000136837:c.G73T:p.G25X 6qG3 NA NA chr6 146961008 CTTxGAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 125 0 0 27.299597 0.324324 0.02 -0.333181 25 12 691 317 60 60 0 0 GG 20.128146 67 0 1871 0 KEEP + Ppfibp1 YES B[a]P_3 chr6 24553615 24553615 C A exonic Lmod2 synonymous SNV NM_053098:c.C588A:p.A196A exonic Lmod2 synonymous SNV uc009bbu.1:c.C588A:p.A196A exonic ENSMUSG00000029683 synonymous SNV ENSMUST00000031694:c.C588A:p.A196A 6qA3.1 NA NA chr6 24553615 CGCxATT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 95 0 0 66.405844 0.595238 0.02 -0.377024 17 25 470 668 60 60 0 0 CC 11.728394 39 0 1082 0 KEEP + Lmod2 YES B[a]P_3 chr6 28781431 28781431 G T exonic Lrrc4 nonsynonymous SNV NM_138682:c.C184A:p.R62S exonic Lrrc4 nonsynonymous SNV uc009bcu.1:c.C184A:p.R62S exonic ENSMUSG00000049939 nonsynonymous SNV ENSMUST00000062304:c.C184A:p.R62S 6qA3.3 NA NA chr6 28781431 GGCxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 219 0 0 67.707628 0.378378 0.02 1.02249 46 28 1073 756 60 60 0 0 GG 33.01801 110 0 2704 0 KEEP - Lrrc4 YES B[a]P_3 chr6 31478683 31478683 C A exonic Podxl nonsynonymous SNV NM_013723:c.G424T:p.G142W exonic Podxl nonsynonymous SNV uc009bgh.2:c.G424T:p.G142W exonic ENSMUSG00000025608 nonsynonymous SNV ENSMUST00000026698:c.G424T:p.G142W 6qA3.3 NA NA chr6 31478683 GCCxCAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 168 0 0 164.128396 0.717647 0.02 0.843946 24 61 654 1571 60 60 0 0 CC 20.751327 69 0 1904 0 KEEP - Podxl YES B[a]P_3 chr6 38359423 38359423 C T exonic Ttc26 nonsynonymous SNV NM_153600:c.C1078T:p.P360S exonic Ttc26 nonsynonymous SNV uc009bkc.1:c.C1078T:p.P360S exonic ENSMUSG00000056832 nonsynonymous SNV ENSMUST00000162554:c.C1078T:p.P360S 6qB1 NA NA chr6 38359423 ATAxCAG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 168 2 0 21.62425 0.169231 0.02 0.921392 54 11 1454 292 60 60 0 0 CC 21.053359 70 0 1921 0 KEEP + Ttc26 NO B[a]P_3 chr6 3917928 3917928 C A exonic Tfpi2 nonsynonymous SNV NM_009364:c.G211T:p.G71C exonic Tfpi2 nonsynonymous SNV uc009avh.1:c.G211T:p.G71C exonic ENSMUSG00000029664 nonsynonymous SNV ENSMUST00000031674:c.G211T:p.G71C 6qA1 NA NA chr6 3917928 TGCxCAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 65 0 0 23.103939 0.6 0.02 -0.131505 6 9 165 232 60 60 0 0 CC 11.729756 39 0 1083 0 KEEP - Tfpi2 YES B[a]P_3 chr6 39596877 39596877 C G intronic Braf NA NA intronic Braf NA NA intronic ENSMUSG00000002413 NA NA 6qB1 NA NA chr6 39596877 ACAxAGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162114 0.162467 0.997832 32 0 0 26.406716 0.692308 0.02 -0.114002 4 9 111 256 60 60 0 0 CC 4.813023 16 0 454 0 KEEP - Braf NO B[a]P_3 chr6 40373708 40373708 C A intronic E330009J07Rik NA NA intronic E330009J07Rik NA NA intronic ENSMUSG00000037172 NA NA 6qB1 NA NA chr6 40373708 AGGxTCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.693651 0.693668 0.999974 82 0 0 45.374658 0.6 0.02 -0.262702 12 18 333 456 60 60 0 0 CC 11.430161 38 0 1067 0 KEEP - E330009J07Rik YES B[a]P_3 chr6 40522189 40522189 C A exonic Olfr460 nonsynonymous SNV NM_146383:c.C803A:p.A268D exonic Olfr460 nonsynonymous SNV uc009bmz.1:c.C803A:p.A268D exonic ENSMUSG00000045514 nonsynonymous SNV ENSMUST00000051540:c.C803A:p.A268D 6qB1 NA NA chr6 40522189 CAGxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 146 0 0 51.797505 0.333333 0.02 0.983605 46 23 1263 599 60 60 0 0 CC 19.478416 65 0 1763 0 KEEP + Olfr460 YES B[a]P_3 chr6 41009463 41009463 T C intergenic "2210010C04Rik(dist=23955),Try4(dist=242808)" NA NA exonic TCRBV10S1A2Dbeta1Jbeta2.1 nonsynonymous SNV uc009bns.1:c.T22C:p.C8R exonic ENSMUSG00000076464 nonsynonymous SNV ENSMUST00000103265:c.T22C:p.C8R 6qB1 NA NA chr6 41009463 AGCxGTG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 119 0 0 25.232164 0.254902 0.02 1.141659 38 13 1028 316 60 60 0 0 TT 14.42775 48 0 1311 0 KEEP NA 2210010C04Rik NO B[a]P_3 chr6 41563669 41563669 G C intronic Ephb6 NA NA intronic Ephb6 NA NA intronic ENSMUSG00000029869 NA NA 6qB2.1 NA NA chr6 41563669 TTAxTTT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 118 0 0 35.349811 0.306122 0.02 -0.438433 34 15 940 413 60 60 0 0 GG 16.843824 56 0 1573 0 KEEP + Ephb6 NO B[a]P_3 chr6 42847236 42847236 A T exonic Olfr448 nonsynonymous SNV NM_146273:c.A785T:p.K262M exonic Olfr448 nonsynonymous SNV uc009bsa.1:c.A785T:p.K262M exonic ENSMUSG00000043119 nonsynonymous SNV ENSMUST00000058668:c.A785T:p.K262M 6qB2.1 NA NA chr6 42847236 CCAxGTC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 201 2 0 55.062114 0.380952 0.02 0.947664 39 24 1069 618 60 60 0 0 AA 28.268553 94 0 2608 0 KEEP + Olfr448 NO B[a]P_3 chr6 48431297 48431297 C G exonic Sspo synonymous SNV NM_173428:c.C9927G:p.R3309R exonic Sspo synonymous SNV uc009bul.1:c.C3951G:p.R1317R exonic ENSMUSG00000029797 synonymous SNV ENSMUST00000043676:c.C9492G:p.R3164R 6qB2.3 NA NA chr6 48431297 CCGxTCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 126 0 0 41.796254 0.5 0.02 -0.280601 16 16 447 438 60 60 0 0 CC 20.743888 69 0 1937 0 KEEP + Sspo NO B[a]P_3 chr6 49213401 49213401 C A intronic Tra2a NA NA exonic mAWMS1 nonsynonymous SNV uc012elq.1:c.G215T:p.R72L intronic ENSMUSG00000029817 NA NA 6qB2.3 NA NA chr6 49213401 GCCxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161255 0.162467 0.99254 26 0 0 24.90987 0.692308 0.02 -0.113933 4 9 92 241 60 60 0 0 CC 2.704549 9 0 229 0 KEEP - Tra2a YES B[a]P_3 chr6 53882431 53882431 C A exonic Cpvl nonsynonymous SNV NM_027749:c.G713T:p.G238V exonic Cpvl nonsynonymous SNV uc009bzm.2:c.G713T:p.G238V exonic ENSMUSG00000052955 nonsynonymous SNV ENSMUST00000065084:c.G713T:p.G238V 6qB3 NA NA chr6 53882431 TCTxCAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119602 0.120436 0.993072 24 0 0 32.329643 1 0.02 -0.096386 0 11 0 271 0 60 0 0 CC 3.309074 11 0 314 0 KEEP - Cpvl YES B[a]P_3 chr6 54222953 54222953 C A exonic Chn2 synonymous SNV NM_023543:c.C52A:p.R18R exonic Chn2 synonymous SNV uc009bzt.2:c.C52A:p.R18R exonic ENSMUSG00000004633 synonymous SNV ENSMUST00000067741:c.C52A:p.R18R 6qB3 NA NA chr6 54222953 GTTxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693573 0.693668 0.999863 53 0 0 8.802516 0.172414 0.02 -0.263024 24 5 664 122 60 60 0 0 CC 6.014213 20 0 556 0 KEEP + Chn2 YES B[a]P_3 chr6 54222977 54222977 C A exonic Chn2 nonsynonymous SNV NM_023543:c.C76A:p.R26S exonic Chn2 nonsynonymous SNV uc009bzt.2:c.C76A:p.R26S exonic ENSMUSG00000004633 nonsynonymous SNV ENSMUST00000067741:c.C76A:p.R26S 6qB3 NA NA chr6 54222977 AAGxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.800025 0.800245 0.999725 76 0 0 16.582446 0.242424 0.02 -0.298061 25 8 669 207 60 60 0 0 CC 9.923092 33 0 885 0 KEEP + Chn2 YES B[a]P_3 chr6 54375025 54375025 C G ncRNA_intronic 9130019P16Rik NA NA ncRNA_intronic 9130019P16Rik NA NA ncRNA_exonic ENSMUSG00000073067 NA NA 6qB3 NA NA chr6 54375025 CTGxTGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 167 0 0 40.069559 0.320755 0.02 1.132628 36 17 996 464 60 60 0 0 CC 27.370063 91 0 2537 0 KEEP - 9130019P16Rik NO B[a]P_3 chr6 55295579 55295579 T G intronic Aqp1 NA NA intronic Aqp1 NA NA intronic ENSMUSG00000004655 NA NA 6qB3 NA NA chr6 55295579 AATxCCC T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.83568 0.835716 0.999957 73 0 0 26.171368 0.297297 0.02 -0.32441 26 11 694 307 60 60 0 0 TT 7.820013 26 0 717 0 KEEP + Aqp1 NO B[a]P_3 chr6 56974995 56974995 G A exonic Vmn1r7 synonymous SNV NM_001166710:c.C273T:p.I91I exonic Vmn1r7 synonymous SNV uc012emm.1:c.C273T:p.I91I exonic ENSMUSG00000061481 synonymous SNV ENSMUST00000075534:c.C273T:p.I91I 6qB3 "Score=0.940863;Name=No.93687,chr6:56985812" NA chr6 56974995 GCAxATA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 574 5 258 78.959687 0.343434 0.02 0.729257 65 34 1825 904 36 36 0 0 GG 92.054356 306 0 8812 0 KEEP - Vmn1r7 NO B[a]P_3 chr6 57183600 57183600 C A exonic Vmn1r14 nonsynonymous SNV NM_053237:c.C168A:p.H56Q exonic Vmn1r14 nonsynonymous SNV uc009cca.1:c.C168A:p.H56Q exonic ENSMUSG00000068475 nonsynonymous SNV ENSMUST00000089918:c.C168A:p.H56Q 6qB3 NA NA chr6 57183600 TCAxATA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 257 1 12 129.30704 0.592593 0.02 0.887126 33 48 899 1302 60 60 0 0 CC 40.886296 136 0 3736 0 KEEP + Vmn1r14 YES B[a]P_3 chr6 58165509 58165509 A T exonic Vmn1r27 nonsynonymous SNV NM_134436:c.T503A:p.M168K exonic Vmn1r27 nonsynonymous SNV uc009ccx.1:c.T503A:p.M168K exonic ENSMUSG00000071428 nonsynonymous SNV ENSMUST00000095862:c.T503A:p.M168K 6qB3 NA NA chr6 58165509 TTCxTGC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 530 1 64 60.194299 0.189542 0.02 3.45078 124 29 3213 786 60 60 0 0 AA 86.912404 289 0 7826 0 KEEP - Vmn1r27 NO B[a]P_3 chr6 68757306 68757306 G A intergenic "4930515G16Rik(dist=1241613),Rprl1(dist=519625)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076533 synonymous SNV ENSMUST00000103334:c.C195T:p.S65S 6qC1 NA NA chr6 68757306 GTTxGAT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 245 5 0 56.738161 0.421053 0.02 1.09897 33 24 889 621 60 60 0 0 GG 47.824744 159 0 4498 0 KEEP NA 4930515G16Rik NO B[a]P_3 chr6 6988962 6988962 G T exonic Acn9 nonsynonymous SNV NM_001077713:c.G283T:p.D95Y exonic Acn9 nonsynonymous SNV uc009axa.1:c.G283T:p.D95Y exonic ENSMUSG00000042505 nonsynonymous SNV ENSMUST00000040826:c.G283T:p.D95Y 6qA1 NA NA chr6 6988962 CGTxATG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 86 0 0 22.704832 0.322581 0.02 -0.271821 21 10 588 264 60 60 0 0 GG 12.935823 43 0 1235 0 KEEP + Acn9 YES B[a]P_3 chr6 72525818 72525818 T A intronic Elmod3 NA NA intronic Elmod3 NA NA intronic ENSMUSG00000056698 NA NA 6qC1 NA NA chr6 72525818 CCTxGAG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 47 0 0 50.320146 0.666667 0.02 -0.236714 9 18 228 492 60 60 0 0 TT 5.11089 17 0 450 0 KEEP - Elmod3 NO B[a]P_3 chr6 73118911 73118911 A T exonic Dnah6 nonsynonymous SNV NM_001164669:c.T2510A:p.I837K exonic Dnahc6 nonsynonymous SNV uc009cjk.2:c.T2510A:p.I837K exonic ENSMUSG00000052861 nonsynonymous SNV ENSMUST00000064948:c.T2510A:p.I837K 6qC1 NA NA chr6 73118911 TTTxTTT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 125 0 0 37.041109 0.301887 0.02 1.132773 37 16 924 435 60 60 0 0 AA 16.538897 55 0 1464 0 KEEP - Dnah6 NO B[a]P_3 chr6 83139906 83139906 G T exonic Dctn1 nonsynonymous SNV NM_001198867:c.G744T:p.E248D exonic Dctn1 nonsynonymous SNV uc009cna.2:c.G744T:p.E248D exonic ENSMUSG00000031865 nonsynonymous SNV ENSMUST00000113907:c.G453T:p.E151D 6qC3 NA NA chr6 83139906 GGAxGCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 52 0 0 9.457809 0.2 0.02 -0.219059 20 5 549 125 60 60 0 0 GG 6.317222 21 0 598 0 KEEP + Dctn1 YES B[a]P_3 chr6 86618615 86618615 C G exonic Mxd1 synonymous SNV NM_010751:c.G87C:p.G29G exonic Mxd1 synonymous SNV uc009csh.2:c.G87C:p.G29G exonic ENSMUSG00000001156 synonymous SNV ENSMUST00000001184:c.G87C:p.G29G 6qD1 NA NA chr6 86618615 ATAxCCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 71 0 0 16.050978 0.291667 0.02 -0.210333 17 7 460 190 60 60 0 0 CC 11.72865 39 0 1086 0 KEEP - Mxd1 NO B[a]P_3 chr6 86676043 86676043 C G intronic Gmcl1 NA NA intronic Gmcl1 NA NA intronic ENSMUSG00000001157 NA NA 6qD1 NA NA chr6 86676043 TGCxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196309 0.196312 0.999988 53 0 0 12.496314 0.428571 0.02 -0.122586 8 6 217 138 60 60 0 0 CC 8.121178 27 0 753 0 KEEP - Gmcl1 NO B[a]P_3 chr6 87337207 87337207 A G intronic Gkn3 NA NA intronic Gkn3 NA NA intronic ENSMUSG00000030048 NA NA 6qD1 NA NA chr6 87337207 TAAxGCC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 87 0 0 12.370087 0.157895 0.02 -0.333156 32 6 855 167 60 60 0 0 AA 13.23293 44 0 1221 0 KEEP - Gkn3 NO B[a]P_3 chr6 88561353 88561353 C A exonic Kbtbd12 nonsynonymous SNV NM_001278671:c.G1418T:p.R473L intergenic "Sec61a1(dist=92559),Kbtbd12(dist=2392)" NA NA exonic ENSMUSG00000033182 nonsynonymous SNV ENSMUST00000120933:c.G1418T:p.R473L 6qD1 NA NA chr6 88561353 GCCxGCT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 69 0 0 8.284513 0.181818 0.02 -0.192589 18 4 391 109 60 60 0 0 CC 8.849684 35 1 882 15 KEEP - Kbtbd12 YES B[a]P_3 chr6 90311498 90311498 C A exonic Uroc1 nonsynonymous SNV NM_144940:c.C1844A:p.A615D exonic Uroc1 nonsynonymous SNV uc009cxc.2:c.C1844A:p.A615D exonic ENSMUSG00000034456 nonsynonymous SNV ENSMUST00000046128:c.C1844A:p.A615D 6qD1 NA NA chr6 90311498 AGGxTGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 68 0 0 34.270002 0.65 0.02 -0.18411 7 13 195 337 60 60 0 0 CC 10.521279 35 0 981 0 KEEP + Uroc1 YES B[a]P_3 chr6 91873546 91873546 G A exonic 4930590J08Rik synonymous SNV NM_198668:c.G1401A:p.L467L exonic 4930590J08Rik synonymous SNV uc009cyl.1:c.G1401A:p.L467L exonic ENSMUSG00000034063 synonymous SNV ENSMUST00000059318:c.G1401A:p.L467L 6qD1 NA NA chr6 91873546 ATTxCTC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 53 0 0 16.842176 0.285714 0.02 -0.245499 20 8 554 203 60 60 0 0 GG 5.997823 20 0 526 0 KEEP + 4930590J08Rik NO B[a]P_3 chr7 103106962 103106962 C A intergenic "NONE(dist=NONE),Tenm4(dist=252185)" NA NA intergenic "AK077481(dist=1251455),Odz4(dist=252185)" NA NA UTR5 ENSMUSG00000055099 NA NA 7qE1 NA NA chr7 103106962 CTCxCAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 73 0 0 25.258301 0.526316 0.02 -0.28931 9 10 246 262 60 60 0 0 CC 9.278437 31 0 839 0 KEEP NA NONE YES B[a]P_3 chr7 103843252 103843252 C A intronic Tenm4 NA NA intronic "Odz4,ten-m4" NA NA intronic ENSMUSG00000048078 NA NA 7qE1 NA NA chr7 103843252 AGCxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162446 0.162467 0.999869 43 0 0 17.739516 0.538462 0.02 -0.113981 6 7 167 183 60 60 0 0 CC 6.266296 21 0 552 0 KEEP + Tenm4 YES B[a]P_3 chr7 104470144 104470144 C A exonic Usp35 nonsynonymous SNV NM_001177412:c.G964T:p.V322L exonic Usp35 nonsynonymous SNV uc009ija.1:c.G157T:p.V53L ncRNA_exonic ENSMUSG00000035713 NA NA 7qE1 NA NA chr7 104470144 GCAxGAT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 50 0 0 27.373608 0.625 0.02 -0.149017 6 10 146 272 60 60 0 0 CC 7.512272 25 0 632 0 KEEP - Usp35 YES B[a]P_3 chr7 104678928 104678928 G C exonic Ints4 nonsynonymous SNV NM_027256:c.G2219C:p.R740P exonic Ints4 nonsynonymous SNV uc009iji.2:c.G2219C:p.R740P exonic ENSMUSG00000025133 nonsynonymous SNV ENSMUST00000026126:c.G2219C:p.R740P 7qE1 NA NA chr7 104678928 CACxAAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 144 0 0 102.097243 0.616667 0.02 1.169285 23 37 593 1018 60 60 0 0 GG 17.991186 60 0 1573 0 KEEP + Ints4 NO B[a]P_3 chr7 105122875 105122875 C A intronic Gdpd4 NA NA intronic Gdpd4 NA NA intronic ENSMUSG00000035582 NA NA 7qE2 NA NA chr7 105122875 TGTxCCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.454419 0.457757 0.992708 36 0 0 36.262388 0.666667 0.02 -0.192862 7 14 198 354 60 60 0 0 CC 3.008321 10 0 287 0 KEEP + Gdpd4 YES B[a]P_3 chr7 105225604 105225604 C A exonic Myo7a nonsynonymous SNV NM_001256083:c.G2971T:p.A991S exonic Myo7a nonsynonymous SNV uc009ikb.1:c.G2971T:p.A991S exonic ENSMUSG00000030761 nonsynonymous SNV ENSMUST00000084979:c.G2971T:p.A991S 7qE2 NA NA chr7 105225604 TGGxGAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 149 3 0 106.225035 0.615385 0.02 1.027981 25 40 631 1060 60 60 0 0 CC 16.508364 58 1 1522 8 KEEP - Myo7a YES B[a]P_3 chr7 107155090 107155090 G C exonic Chrdl2 synonymous SNV NM_133709:c.G15C:p.V5V exonic Chrdl2 synonymous SNV uc009imi.2:c.G15C:p.V5V exonic ENSMUSG00000030732 synonymous SNV ENSMUST00000032977:c.G15C:p.V5V 7qE2 NA NA chr7 107155090 GGTxAGG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 228 1 0 168.204993 0.648352 0.02 0.897271 32 59 877 1657 60 60 0 0 GG 30.004934 100 0 2763 0 KEEP + Chrdl2 NO B[a]P_3 chr7 107567044 107567044 G T exonic C2cd3 unknown UNKNOWN exonic C2cd3 stopgain SNV uc009imy.1:c.G1234T:p.G412X exonic ENSMUSG00000047248 stopgain SNV ENSMUST00000119647:c.G1234T:p.G412X 7qE3 NA NA chr7 107567044 CCAxGAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 43 0 0 25.094564 0.555556 0.02 -0.157814 8 10 226 257 60 60 0 0 GG 5.414761 18 0 512 0 KEEP + C2cd3 YES B[a]P_3 chr7 109575262 109575262 G T exonic Stim1 nonsynonymous SNV NM_009287:c.G1186T:p.V396L exonic Stim1 nonsynonymous SNV uc009irm.1:c.G1186T:p.V396L exonic ENSMUSG00000030987 nonsynonymous SNV ENSMUST00000033289:c.G1186T:p.V396L 7qE3 NA NA chr7 109575262 CATxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 78 0 0 30.028418 0.461538 0.02 -0.236491 14 12 386 321 60 60 0 0 GG 11.423406 38 0 1061 0 KEEP + Stim1 YES B[a]P_3 chr7 10963012 10963012 A T intergenic "Vmn1r66(dist=102312),Vmn1r67(dist=69126)" NA NA intergenic "Vmn1r66(dist=102312),Vmn1r67(dist=69126)" NA NA intronic ENSMUSG00000034122 NA NA 7qA1 NA NA chr7 10963012 GTGxGCT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 34 0 0 12.800967 0.428571 0.02 -0.122644 8 6 215 141 60 60 0 0 AA 5.715247 19 0 534 0 KEEP NA Vmn1r66 NO B[a]P_3 chr7 110600550 110600550 G T exonic Olfr606 nonsynonymous SNV NM_147094:c.G698T:p.R233L exonic Olfr606 nonsynonymous SNV uc009itt.1:c.G698T:p.R233L exonic ENSMUSG00000073949 nonsynonymous SNV ENSMUST00000098200:c.G698T:p.R233L 7qE3 NA NA chr7 110600550 CCCxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 144 0 0 31.441006 0.269231 0.02 1.142136 38 14 871 379 60 60 0 1 GG 23.137338 77 0 1938 0 KEEP + Olfr606 YES B[a]P_3 chr7 111029812 111029812 A G downstream Olfr66 NA NA downstream Olfr66 NA NA downstream ENSMUSG00000058200 NA NA 7qE3 NA NA chr7 111029812 ATAxTAA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 34 0 0 22.063522 0.571429 0.02 -0.131517 6 8 156 224 60 60 0 0 AA 5.41432 18 0 504 0 KEEP - Olfr66 NO B[a]P_3 chr7 111055945 111055945 G T UTR3 Olfr65 NA NA UTR3 Olfr65 NA NA UTR3 ENSMUSG00000047163 NA NA 7qE3 NA NA chr7 111055945 GCAxGAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 126 0 0 82.152752 0.62 0.02 1.106364 19 31 529 818 60 60 0 0 GG 18.650197 62 0 1753 0 KEEP + Olfr65 YES B[a]P_3 chr7 112486111 112486111 C T exonic Olfr691 nonsynonymous SNV NM_147061:c.G118A:p.A40T exonic Olfr691 nonsynonymous SNV uc009ixw.1:c.G118A:p.A40T exonic ENSMUSG00000043948 nonsynonymous SNV ENSMUST00000057528:c.G118A:p.A40T 7qE3 NA NA chr7 112486111 CTGxAGT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 69 0 0 45.616456 0.62069 0.02 -0.254202 11 18 297 454 60 60 0 0 CC 9.911081 33 0 917 0 KEEP - Olfr691 NO B[a]P_3 chr7 112759965 112759965 C G exonic Trim3 nonsynonymous SNV NM_018880:c.G1960C:p.E654Q exonic Trim3 nonsynonymous SNV uc009iym.1:c.G1960C:p.E654Q exonic ENSMUSG00000036989 nonsynonymous SNV ENSMUST00000057525:c.G1960C:p.E654Q 7qE3 NA NA chr7 112759965 ACTxTCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 82 1 0 28.23351 0.315789 0.02 -0.333206 26 12 733 328 60 60 0 0 CC 9.926097 33 0 938 0 KEEP - Trim3 NO B[a]P_3 chr7 113474207 113474207 C A intergenic "Gm8989(dist=6165),Gm4759(dist=90857)" NA NA intergenic "Gm8989(dist=6165),Gm4759(dist=90857)" NA NA intergenic "ENSMUSG00000091567(dist=6165),ENSMUSG00000053541(dist=90857)" NA NA 7qE3 "Score=0.994666;Name=No.101591,chr7:113172388" NA chr7 113474207 GCTxTGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 70 0 1 24.316172 0.407407 0.02 -0.236711 16 11 456 270 60 60 0 0 CC 9.626674 32 0 919 0 KEEP NA Gm8989 YES B[a]P_3 chr7 113857883 113857883 G T exonic Olfr695 nonsynonymous SNV NM_146598:c.C311A:p.A104E exonic Olfr695 nonsynonymous SNV uc009izy.2:c.C311A:p.A104E exonic ENSMUSG00000057832 nonsynonymous SNV ENSMUST00000080925:c.C311A:p.A104E 7qE3 NA NA chr7 113857883 AGTxCCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 207 0 0 36.311129 0.232877 0.02 0.957291 56 17 1531 454 60 60 0 0 GG 34.26903 114 0 3166 0 KEEP - Olfr695 YES B[a]P_3 chr7 114886596 114886596 C A exonic Ppfibp2 synonymous SNV NM_001163557:c.C2409A:p.T803T exonic Ppfibp2 synonymous SNV uc009jbh.2:c.C1959A:p.T653T exonic ENSMUSG00000036528 synonymous SNV ENSMUST00000098134:c.C2409A:p.T803T 7qE3 NA NA chr7 114886596 CACxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 62 0 0 10.756388 0.208333 0.02 -0.210266 19 5 450 137 60 60 0 0 CC 9.311927 31 0 759 0 KEEP + Ppfibp2 YES B[a]P_3 chr7 115237704 115237704 T C downstream Olfr482 NA NA downstream Olfr482 NA NA downstream ENSMUSG00000059031 NA NA 7qE3 "Score=0.988619;Name=No.101486,chr7:88912411" NA chr7 115237704 TAGxAGG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 107 0 15 26.78782 0.366667 0.02 -0.262968 19 11 472 301 60 60 0 0 TT 16.236214 54 0 1437 0 KEEP - Olfr482 NO B[a]P_3 chr7 123301398 123301398 G T exonic Plekha7 synonymous SNV NM_172743:c.C1122A:p.P374P exonic Plekha7 synonymous SNV uc009jja.1:c.C1479A:p.P493P exonic ENSMUSG00000045659 synonymous SNV ENSMUST00000084664:c.C1122A:p.P374P 7qF1 NA NA chr7 123301398 CCTxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 109 1 0 72.183355 0.692308 0.02 -0.341675 12 27 327 698 60 60 0 0 GG 15.641584 52 0 1470 0 KEEP - Plekha7 YES B[a]P_3 chr7 125306721 125306721 A G exonic Smg1 nonsynonymous SNV NM_001031814:c.T6158C:p.L2053P exonic Smg1 nonsynonymous SNV uc009jjp.1:c.T6158C:p.L2053P exonic ENSMUSG00000030655 nonsynonymous SNV ENSMUST00000032891:c.T6158C:p.L2053P 7qF2 NA NA chr7 125306721 TTTxGTT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999919 0.999919 1 224 0 0 61.669742 0.284211 0.02 0.764898 68 27 1747 734 60 60 0 1 AA 29.431662 98 0 2644 0 KEEP - Smg1 NO B[a]P_3 chr7 127281607 127281607 C T exonic Zp2 nonsynonymous SNV NM_011775:c.G871A:p.E291K exonic Zp2 nonsynonymous SNV uc009jmi.1:c.G871A:p.E291K exonic ENSMUSG00000030911 nonsynonymous SNV ENSMUST00000033207:c.G871A:p.E291K 7qF2 NA NA chr7 127281607 CCTxAGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 70 0 0 55.491901 0.8 0.02 -0.219161 5 20 140 514 60 60 0 0 CC 11.424569 38 0 1082 0 KEEP - Zp2 NO B[a]P_3 chr7 127504994 127504994 G C exonic Abca15 nonsynonymous SNV NM_177213:c.G2164C:p.G722R exonic Abca15 nonsynonymous SNV uc009jmp.1:c.G2164C:p.G722R exonic ENSMUSG00000054746 nonsynonymous SNV ENSMUST00000076272:c.G2164C:p.G722R 7qF2 NA NA chr7 127504994 CTGxGCG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 129 0 0 23.19296 0.266667 0.02 -0.394466 33 12 909 288 60 60 0 0 GG 21.009932 70 0 1938 0 KEEP + Abca15 NO B[a]P_3 chr7 128277532 128277532 C A exonic Otoa nonsynonymous SNV NM_139310:c.C2107A:p.P703T exonic Otoa nonsynonymous SNV uc009jno.1:c.C1051A:p.P351T exonic ENSMUSG00000034990 nonsynonymous SNV ENSMUST00000047025:c.C2107A:p.P703T 7qF2 NA NA chr7 128277532 TCCxCCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 96 1 0 58.808239 0.534884 0.02 -0.376204 20 23 509 607 60 60 0 0 CC 11.130046 37 0 1046 0 KEEP + Otoa YES B[a]P_3 chr7 128291273 128291273 G C exonic Otoa nonsynonymous SNV NM_139310:c.G2746C:p.G916R exonic Otoa nonsynonymous SNV uc009jno.1:c.G1690C:p.G564R exonic ENSMUSG00000034990 nonsynonymous SNV ENSMUST00000047025:c.G2746C:p.G916R 7qF2 NA NA chr7 128291273 CTGxGCC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 64 0 0 34.457254 0.652174 0.02 -0.201337 8 15 220 338 60 60 0 0 GG 9.624348 32 0 890 0 KEEP + Otoa NO B[a]P_3 chr7 130408789 130408789 G C exonic Slc5a11 nonsynonymous SNV NM_146198:c.G1093C:p.V365L exonic Slc5a11 nonsynonymous SNV uc009jph.1:c.G1093C:p.V365L exonic ENSMUSG00000030769 nonsynonymous SNV ENSMUST00000098061:c.G1093C:p.V365L 7qF3 NA NA chr7 130408789 CTTxTGC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 151 1 0 35.941334 0.294118 0.02 1.248041 36 15 976 422 60 60 0 0 GG 22.257477 74 0 2059 0 KEEP + Slc5a11 NO B[a]P_3 chr7 134472216 134472216 G T exonic Itgal nonsynonymous SNV NM_001253872:c.G3071T:p.R1024L exonic Itgal nonsynonymous SNV uc009juy.1:c.G3068T:p.R1023L exonic ENSMUSG00000030830 nonsynonymous SNV ENSMUST00000118405:c.G1880T:p.R627L 7qF3 NA NA chr7 134472216 GGCxGGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800159 0.800245 0.999892 71 0 0 9.359532 0.142857 0.02 -0.306715 30 5 758 132 60 60 0 0 GG 6.918264 23 0 644 0 KEEP + Itgal YES B[a]P_3 chr7 134663295 134663295 G T intergenic "1700008J07Rik(dist=6912),Snora30(dist=8116)" NA NA exonic "AK142089,AK169954,Srcap" nonsynonymous SNV uc009jvv.1:c.G255T:p.R85S exonic ENSMUSG00000053877 nonsynonymous SNV ENSMUST00000098025:c.G255T:p.R85S 7qF3 NA NA chr7 134663295 CAGxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999998 83 1 0 54.273739 0.536585 0.02 -0.358906 19 22 510 561 60 60 0 0 GG 10.21058 34 0 926 0 KEEP NA 1700008J07Rik YES B[a]P_3 chr7 134989617 134989617 G T exonic Stx4a nonsynonymous SNV NM_009294:c.G462T:p.E154D exonic Stx4a nonsynonymous SNV uc009jwy.1:c.G462T:p.E154D exonic ENSMUSG00000030805 nonsynonymous SNV ENSMUST00000033075:c.G462T:p.E154D 7qF3 NA NA chr7 134989617 GGAxCGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 144 0 0 91.629795 0.673077 0.02 1.04447 17 35 459 892 60 60 0 1 GG 24.934446 83 0 2313 0 KEEP + Stx4a YES B[a]P_3 chr7 135032032 135032032 G T intronic Prss53 NA NA intronic Prss53 NA NA intronic "ENSMUSG00000030804,ENSMUSG00000044139" NA NA 7qF3 NA NA chr7 135032032 CTGxAGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 86 2 0 46.633159 0.465116 0.02 -0.376933 23 20 630 500 60 60 0 0 GG 10.22781 34 0 967 0 KEEP - Prss53 YES B[a]P_3 chr7 135589138 135589138 T G intronic Tial1 NA NA intronic Tial1 NA NA intronic ENSMUSG00000030846 NA NA 7qF3 NA NA chr7 135589138 ACTxGCA T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 74 0 0 43.176461 0.681818 0.02 -0.192908 7 15 186 420 60 60 0 0 TT 13.836323 46 0 1280 0 KEEP - Tial1 NO B[a]P_3 chr7 136466885 136466885 C A exonic Ppapdc1a nonsynonymous SNV NM_001080963:c.C329A:p.P110H exonic Ppapdc1a nonsynonymous SNV uc009jzl.1:c.C329A:p.P110H exonic ENSMUSG00000070366 nonsynonymous SNV ENSMUST00000094018:c.C329A:p.P110H 7qF3 NA NA chr7 136466885 GCCxCGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260399 0.260965 0.997832 38 0 0 8.402068 0.25 0.02 -0.140286 12 4 328 104 60 60 0 0 CC 4.812526 16 0 444 0 KEEP + Ppapdc1a YES B[a]P_3 chr7 139235599 139235599 G T exonic Cpxm2 synonymous SNV NM_018867:c.C2272A:p.R758R exonic Cpxm2 synonymous SNV uc009kbu.2:c.C2272A:p.R758R exonic ENSMUSG00000030862 synonymous SNV ENSMUST00000033149:c.C2272A:p.R758R 7qF3 NA NA chr7 139235599 TCCxTCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 55 0 0 47.917094 0.708333 0.02 -0.210389 7 17 170 461 60 60 0 0 GG 7.509206 25 0 610 0 KEEP - Cpxm2 YES B[a]P_3 chr7 142866012 142866012 G T exonic Ptpre stopgain SNV NM_011212:c.G1543T:p.E515X exonic Ptpre stopgain SNV uc009kek.1:c.G1372T:p.E458X exonic ENSMUSG00000041836 stopgain SNV ENSMUST00000054880:c.G1372T:p.E458X 7qF3 NA NA chr7 142866012 TGGxAGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888814 0.888875 0.999931 77 0 0 20.105214 0.25 0.02 -0.359465 30 10 827 251 60 60 0 0 GG 7.512868 25 0 692 0 KEEP + Ptpre YES B[a]P_3 chr7 146422885 146422885 A T exonic Lrrc27 synonymous SNV NM_027164:c.A1299T:p.I433I exonic Lrrc27 synonymous SNV uc009kfm.1:c.A1299T:p.I433I exonic ENSMUSG00000015980 synonymous SNV ENSMUST00000016124:c.A1299T:p.I433I 7qF4 NA NA chr7 146422885 AATxAGG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760854 0.760887 0.999957 66 0 0 48.266982 0.59375 0.02 -0.289272 13 19 339 486 60 60 0 0 AA 7.819835 26 0 714 0 KEEP + Lrrc27 NO B[a]P_3 chr7 146422887 146422887 G A exonic Lrrc27 nonsynonymous SNV NM_027164:c.G1301A:p.S434N exonic Lrrc27 nonsynonymous SNV uc009kfm.1:c.G1301A:p.S434N exonic ENSMUSG00000015980 nonsynonymous SNV ENSMUST00000016124:c.G1301A:p.S434N 7qF4 NA NA chr7 146422887 TAAxGTT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717285 0.717315 0.999957 63 0 0 47.808179 0.6 0.02 -0.271774 12 18 329 480 60 60 0 0 GG 7.821348 26 0 741 0 KEEP + Lrrc27 NO B[a]P_3 chr7 146852829 146852829 G T intergenic "E030019B06Rik(dist=50601),Gpr123(dist=167244)" NA NA ncRNA_intronic AK029726 NA NA intronic ENSMUSG00000049571 NA NA 7qF4 NA NA chr7 146852829 AGGxGAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999998 57 0 0 7.570982 0.190476 0.02 -0.184125 17 4 468 101 60 60 0 0 GG 9.926318 33 0 931 0 KEEP NA E030019B06Rik YES B[a]P_3 chr7 147125656 147125656 C G exonic Kndc1 nonsynonymous SNV NM_177261:c.C5028G:p.H1676Q exonic Kndc1 nonsynonymous SNV uc009kge.1:c.C2151G:p.H717Q exonic ENSMUSG00000066129 nonsynonymous SNV ENSMUST00000053445:c.C5028G:p.H1676Q 7qF4 NA NA chr7 147125656 GCAxGCG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139743 0.139832 0.999366 33 0 0 30.118849 0.833333 0.02 -0.105223 2 10 54 277 60 60 0 0 CC 5.109392 17 0 432 0 KEEP + Kndc1 NO B[a]P_3 chr7 147409786 147409786 G C intronic Cd163l1 NA NA intronic Cd163l1 NA NA intronic ENSMUSG00000025461 NA NA 7qF4 NA NA chr7 147409786 TCTxCAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 85 0 0 18.051019 0.228571 0.02 -0.30676 27 8 721 224 60 60 0 0 GG 11.732403 39 0 1119 0 KEEP + Cd163l1 NO B[a]P_3 chr7 147482510 147482510 T C UTR3 5830411N06Rik NA NA UTR3 5830411N06Rik NA NA UTR3 ENSMUSG00000054672 NA NA 7qF4 NA NA chr7 147482510 GTGxGAG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 103 0 0 52.968534 0.45283 0.02 1.124265 29 24 745 574 60 60 0 0 TT 12.02559 40 0 1056 0 KEEP + 5830411N06Rik NO B[a]P_3 chr7 147854016 147854016 C G exonic Olfr539 nonsynonymous SNV NM_146961:c.C829G:p.P277A exonic Olfr539 nonsynonymous SNV uc009khz.1:c.C829G:p.P277A exonic ENSMUSG00000059136 nonsynonymous SNV ENSMUST00000078967:c.C829G:p.P277A 7qF5 NA NA chr7 147854016 AGCxCAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 551 5 0 251.343434 0.577778 0.02 3.215999 76 104 2082 2552 60 60 0 0 CC 92.33686 307 0 8566 0 KEEP + Olfr539 NO B[a]P_3 chr7 148293659 148293659 T G intronic Ano9 NA NA intronic Ano9 NA NA intronic ENSMUSG00000054662 NA NA 7qF5 NA NA chr7 148293659 GACxCCT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 178 0 0 95.329802 0.569444 0.02 1.038108 31 41 840 972 60 60 0 0 TT 24.03787 80 0 2191 0 KEEP - Ano9 NO B[a]P_3 chr7 148293682 148293682 C A intronic Ano9 NA NA intronic Ano9 NA NA intronic ENSMUSG00000054662 NA NA 7qF5 NA NA chr7 148293682 GTCxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 196 0 0 125.480445 0.626667 0.02 0.922426 28 47 732 1246 60 60 0 0 CC 27.044371 90 0 2297 0 KEEP - Ano9 YES B[a]P_3 chr7 148378390 148378390 C A exonic Hras nonsynonymous SNV NM_001130443:c.G241T:p.V81L exonic Hras nonsynonymous SNV uc009kju.2:c.G241T:p.V81L exonic ENSMUSG00000025499 nonsynonymous SNV ENSMUST00000026572:c.G241T:p.V81L 7qF5 NA NA chr7 148378390 ATAxACA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 137 0 0 29.404923 0.295455 0.02 -0.385814 31 13 859 348 60 60 0 0 CC 22.557578 75 0 2093 0 KEEP - Hras YES B[a]P_3 chr7 148833858 148833858 G T exonic Muc6 unknown UNKNOWN exonic Muc6 nonsynonymous SNV uc009klu.2:c.C2264A:p.A755E exonic ENSMUSG00000048191 nonsynonymous SNV ENSMUST00000062451:c.C2264A:p.A755E 7qF5 NA NA chr7 148833858 TCTxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 117 3 0 48.306121 0.392157 0.02 1.150188 31 20 845 536 60 60 0 0 GG 18.019798 60 0 1642 0 KEEP - Muc6 YES B[a]P_3 chr7 149033211 149033211 C G exonic Muc5b nonsynonymous SNV NM_028801:c.C1657G:p.R553G exonic Muc5b nonsynonymous SNV uc009kmc.1:c.C1657G:p.R553G exonic ENSMUSG00000066108 nonsynonymous SNV ENSMUST00000084424:c.C1657G:p.R553G 7qF5 NA NA chr7 149033211 GTCxGGC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641289 0.641347 0.999909 55 0 0 25.602947 0.392857 0.02 -0.245156 17 11 374 285 60 60 0 0 CC 7.161738 24 0 552 0 KEEP + Muc5b NO B[a]P_3 chr7 149265846 149265846 C A UTR3 Dusp8 NA NA intergenic "2700078K21Rik(dist=18907),Dusp8(dist=1555)" NA NA UTR3 "ENSMUSG00000037887,ENSMUSG00000043186" NA NA 7qF5 NA NA chr7 149265846 CATxAAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.023907 0.024074 0.993072 20 2 0 7.768052 0.6 0.02 -0.043837 2 3 56 78 60 60 0 0 CC 3.309244 11 0 318 0 KEEP - Dusp8 YES B[a]P_3 chr7 149276043 149276043 C A exonic Dusp8 nonsynonymous SNV NM_008748:c.G37T:p.A13S exonic Dusp8 nonsynonymous SNV uc009kmn.1:c.G37T:p.A13S exonic ENSMUSG00000037887 nonsynonymous SNV ENSMUST00000164254:c.G37T:p.A13S 7qF5 NA NA chr7 149276043 TTGxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 232 4 0 67.350213 0.315217 0.02 0.773736 63 29 1528 784 60 60 0 0 CC 28.235113 94 0 2363 0 KEEP - Dusp8 YES B[a]P_3 chr7 149697366 149697366 G T intronic Tnnt3 NA NA intronic Tnnt3 NA NA intronic ENSMUSG00000061723 NA NA 7qF5 NA NA chr7 149697366 GCTxCAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 168 0 0 117.7571 0.628571 0.02 0.975399 26 44 699 1168 60 60 0 0 GG 24.629113 82 0 2254 0 KEEP + Tnnt3 YES B[a]P_3 chr7 151949356 151949356 C A intergenic "Ano1(dist=24859),Fgf3(dist=75161)" NA NA intergenic "Ano1(dist=24908),AK053040(dist=1312)" NA NA exonic ENSMUSG00000066092 nonsynonymous SNV ENSMUST00000084390:c.C242A:p.T81K 7qF5 NA NA chr7 151949356 GGAxAGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 83 0 0 18.16518 0.236842 0.02 -0.332992 29 9 786 229 60 60 0 0 CC 10.527024 35 0 975 0 KEEP NA Ano1 YES B[a]P_3 chr7 16738156 16738156 C A intronic Slc8a2 NA NA intronic Slc8a2 NA NA intronic ENSMUSG00000030376 NA NA 7qA2 NA NA chr7 16738156 TCCxTCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 70 0 0 30.692114 0.393939 0.02 -0.289278 20 13 535 341 60 60 0 0 CC 10.219752 34 0 923 0 KEEP + Slc8a2 YES B[a]P_3 chr7 17084073 17084073 C A intronic Grlf1 NA NA intronic Grlf1 NA NA intronic ENSMUSG00000058230 NA NA 7qA2 NA NA chr7 17084073 AGCxGAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 192 3 2 41.535045 0.414634 0.02 -0.359222 24 17 574 455 60 60 0 0 CC 37.560701 125 0 3205 0 KEEP - Grlf1 YES B[a]P_3 chr7 17084085 17084085 C A intronic Grlf1 NA NA intronic Grlf1 NA NA intronic ENSMUSG00000058230 NA NA 7qA2 NA NA chr7 17084085 TGCxCAA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 199 4 3 38.672655 0.395349 0.02 -0.376987 26 17 712 431 60 60 0 0 CC 39.014933 130 0 3538 0 KEEP - Grlf1 YES B[a]P_3 chr7 17546134 17546134 T G exonic Pnmal1 synonymous SNV NM_001007569:c.T564G:p.A188A exonic Pnmal1 synonymous SNV uc009fip.1:c.T564G:p.A188A exonic ENSMUSG00000041141 synonymous SNV ENSMUST00000038163:c.T564G:p.A188A 7qA2 NA NA chr7 17546134 GGCxTGG T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 58 1 0 23.812318 0.666667 0.02 -0.201447 5 10 126 232 60 60 0 0 TT 8.719466 29 0 780 0 KEEP + Pnmal1 NO B[a]P_3 chr7 19787267 19787267 C A exonic Eml2 synonymous SNV NM_001162996:c.C1500A:p.G500G exonic Eml2 synonymous SNV uc009fkz.2:c.C1500A:p.G500G exonic ENSMUSG00000040811 synonymous SNV ENSMUST00000120595:c.C1389A:p.G463G 7qA3 NA NA chr7 19787267 GGGxAAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997896 0.997898 0.999999 132 0 0 12.337255 0.09589 0.02 0.957238 66 7 1839 190 60 60 0 0 CC 10.528837 35 0 1000 0 KEEP + Eml2 YES B[a]P_3 chr7 20169440 20169440 C A intronic Clasrp NA NA ncRNA_intronic ClaspL NA NA intronic ENSMUSG00000061028 NA NA 7qA3 NA NA chr7 20169440 GACxAGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 99 0 0 105.554494 0.804348 0.02 -0.403296 9 37 245 978 60 60 0 0 CC 12.032413 40 0 1132 0 KEEP - Clasrp YES B[a]P_3 chr7 20351990 20351990 C A intronic Bcam NA NA intronic Bcam NA NA intronic ENSMUSG00000002980 NA NA 7qA3 NA NA chr7 20351990 GCCxTGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 204 2 0 35.325827 0.153226 0.02 1.851443 105 19 2866 493 60 60 0 0 CC 16.15682 54 0 1420 0 KEEP - Bcam YES B[a]P_3 chr7 25202025 25202025 G T exonic Smg9 nonsynonymous SNV NM_028047:c.G995T:p.R332M exonic 1500002O20Rik nonsynonymous SNV uc009fpn.1:c.G995T:p.R332M exonic ENSMUSG00000002210 nonsynonymous SNV ENSMUST00000002280:c.G995T:p.R332M 7qA3 NA NA chr7 25202025 ACAxGTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 185 2 0 181.153731 0.758621 0.02 2.026937 21 66 583 1706 60 60 0 0 GG 16.24395 54 0 1532 0 KEEP + Smg9 YES B[a]P_3 chr7 25425465 25425465 G T exonic Lypd3 nonsynonymous SNV NM_133743:c.G937T:p.G313C exonic Lypd3 nonsynonymous SNV uc009fqe.1:c.G937T:p.G313C exonic ENSMUSG00000057454 nonsynonymous SNV ENSMUST00000080718:c.G937T:p.G313C 7qA3 NA NA chr7 25425465 GCGxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 145 0 0 107.574483 0.517647 0.02 0.843687 41 44 1133 1122 60 60 0 0 GG 14.434004 48 0 1308 0 KEEP + Lypd3 YES B[a]P_3 chr7 25453533 25453533 G T exonic Tex101 nonsynonymous SNV NM_019981:c.C518A:p.S173Y exonic Tex101 nonsynonymous SNV uc009fqf.1:c.C518A:p.S173Y exonic ENSMUSG00000062773 nonsynonymous SNV ENSMUST00000078001:c.C518A:p.S173Y 7qA3 NA NA chr7 25453533 CCAxAGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 76 0 0 26.033787 0.478261 0.02 -0.201498 12 11 326 277 60 60 0 0 GG 13.536694 45 0 1279 0 KEEP - Tex101 YES B[a]P_3 chr7 25498846 25498846 C T intronic BC049730 NA NA intronic BC049730 NA NA intronic ENSMUSG00000045587 NA NA 7qA3 "Score=0.902982;Name=No.100266,chr7:25473731" NA chr7 25498846 GGCxATG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 59 0 0 21.180076 0.473684 0.02 -0.16657 10 9 280 226 60 60 0 0 CC 8.723506 29 0 828 0 KEEP + BC049730 NO B[a]P_3 chr7 26559607 26559607 G A exonic Axl synonymous SNV NM_001190974:c.C903T:p.I301I exonic Axl synonymous SNV uc009ftx.2:c.C903T:p.I301I exonic ENSMUSG00000002602 synonymous SNV ENSMUST00000002677:c.C903T:p.I301I 7qA3 NA NA chr7 26559607 CCGxATG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 73 0 0 13.957305 0.3 0.02 -0.175371 14 6 387 164 60 60 0 0 GG 12.332086 41 0 1151 0 KEEP - Axl NO B[a]P_3 chr7 27234818 27234818 C T exonic Nlrp4a nonsynonymous SNV NM_172896:c.C830T:p.S277F exonic Nlrp4a nonsynonymous SNV uc012fgc.1:c.C515T:p.S172F exonic ENSMUSG00000040601 nonsynonymous SNV ENSMUST00000068767:c.C830T:p.S277F 7qA3 NA NA chr7 27234818 TCTxTGC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 119 1 0 55.719464 0.567568 0.02 -0.324439 16 21 453 567 60 60 0 0 CC 20.445246 68 0 1934 0 KEEP + Nlrp4a NO B[a]P_3 chr7 28419607 28419607 A T exonic Akt2 synonymous SNV NM_001110208:c.A735T:p.R245R exonic Akt2 synonymous SNV uc009fwr.2:c.A735T:p.R245R exonic ENSMUSG00000004056 synonymous SNV ENSMUST00000085917:c.A735T:p.R245R 7qA3 NA NA chr7 28419607 GCGxGTC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 188 0 0 45.569861 0.184615 0.02 1.851553 106 24 2845 611 60 60 0 0 AA 13.534447 45 0 1247 0 KEEP + Akt2 NO B[a]P_3 chr7 28969256 28969256 G C intronic Dyrk1b NA NA intronic Dyrk1b NA NA intronic ENSMUSG00000002409 NA NA 7qA3 NA NA chr7 28969256 CCCxCAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 129 0 0 12.198691 0.094595 0.02 0.949279 67 7 1591 189 60 60 0 0 GG 11.076648 37 0 859 0 KEEP + Dyrk1b NO B[a]P_3 chr7 29626626 29626626 A C exonic "Lgals4,Lgals6" nonsynonymous SNV NM_010706:c.A955C:p.I319L exonic Lgals4 nonsynonymous SNV uc009gad.1:c.A883C:p.I295L exonic ENSMUSG00000053964 nonsynonymous SNV ENSMUST00000015291:c.A883C:p.I295L 7qA3 NA NA chr7 29626626 GACxTCA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780565 0.78106 0.999366 57 4 0 8.097376 0.133333 0.02 -0.298054 26 4 667 113 60 60 0 0 AA 5.112265 17 0 456 0 KEEP NA Lgals4 NO B[a]P_3 chr7 29651153 29651153 C A exonic Lgals7 nonsynonymous SNV NM_008496:c.C352A:p.R118S exonic Lgals7 nonsynonymous SNV uc009gae.1:c.C352A:p.R118S exonic ENSMUSG00000053522 nonsynonymous SNV ENSMUST00000081457:c.C352A:p.R118S 7qA3 NA NA chr7 29651153 GCGxGCG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 210 2 0 66.03835 0.473684 0.02 1.098919 30 27 726 703 60 60 0 0 CC 33.625359 112 0 2762 0 KEEP + Lgals7 YES B[a]P_3 chr7 29936456 29936456 T C intronic Rasgrp4 NA NA intronic Rasgrp4 NA NA intronic ENSMUSG00000030589 NA NA 7qB1 NA NA chr7 29936456 TCCxCCT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 45 0 0 9.031474 0.266667 0.02 -0.140295 11 4 301 109 60 70 0 0 TT 7.518759 25 0 693 0 KEEP + Rasgrp4 NO B[a]P_3 chr7 29969976 29969976 G T intronic Catsperg1 NA NA ncRNA_intronic A230107C01Rik NA NA intronic ENSMUSG00000049676 NA NA 7qB1 "Score=0.949074;Name=No.100321,chr7:30482305" NA chr7 29969976 CCAxACC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 80 0 2 33.920035 0.56 0.02 -0.219163 11 14 315 347 60 60 0 0 GG 12.626386 42 0 1174 0 KEEP - Catsperg1 YES B[a]P_3 chr7 30510234 30510234 C A exonic Catsperg2 synonymous SNV NM_029714:c.G255T:p.S85S exonic "Catsperg1,Catsperg2" synonymous SNV uc012fhg.1:c.G255T:p.S85S exonic ENSMUSG00000049123 synonymous SNV ENSMUST00000048659:c.G237T:p.S79S 7qB1 "Score=0.949074;Name=No.100321,chr7:29966344" NA chr7 30510234 TGGxGAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 156 1 22 51.492345 0.403846 0.02 1.141699 31 21 734 567 60 60 0 0 CC 27.336517 91 0 2301 0 KEEP - Catsperg2 YES B[a]P_3 chr7 31373391 31373391 C A exonic Kmt2b nonsynonymous SNV NM_029274:c.G346T:p.G116W exonic Wbp7 nonsynonymous SNV uc009gfg.1:c.G346T:p.G116W exonic ENSMUSG00000006307 nonsynonymous SNV ENSMUST00000006470:c.G346T:p.G116W 7qB1 NA NA chr7 31373391 CCCxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139814 0.139832 0.999869 36 0 0 17.998111 0.583333 0.02 -0.105177 5 7 127 182 60 60 0 0 CC 6.310215 21 0 528 0 KEEP - Kmt2b YES B[a]P_3 chr7 31501587 31501587 A G exonic Atp4a nonsynonymous SNV NM_018731:c.A1087G:p.S363G exonic Atp4a nonsynonymous SNV uc009gfz.1:c.A1024G:p.S342G exonic ENSMUSG00000005553 nonsynonymous SNV ENSMUST00000005692:c.A1087G:p.S363G 7qB1 NA NA chr7 31501587 GCCxGTA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 124 1 0 12.204734 0.155556 0.02 -0.394507 38 7 1024 173 60 60 0 0 AA 17.731892 59 0 1618 0 KEEP + Atp4a NO B[a]P_3 chr7 31549516 31549516 T G intronic Dmkn NA NA intronic Dmkn NA NA intronic ENSMUSG00000060962 NA NA 7qB1 NA NA chr7 31549516 GACxGGT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739592 0.739671 0.999892 61 0 0 10.16472 0.1875 0.02 -0.280504 26 6 703 140 60 60 0 0 TT 6.917604 23 0 632 0 KEEP + Dmkn NO B[a]P_3 chr7 33112238 33112238 A G exonic Scgb2b12 nonsynonymous SNV NM_001281508:c.T11C:p.I4T intergenic "Abpa29_a7(dist=613364),Abpa29_a7(dist=114322)" NA NA intergenic "ENSMUSG00000091362(dist=103568),ENSMUSG00000090513(dist=6979)" NA NA 7qB1 "Score=0.988839;Name=No.100668,chr7:33653169" NA chr7 33112238 AGTxTCC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 52 0 5 6.352461 1 0.02 -0.017536 0 2 0 54 0 29 0 0 AA 7.648015 36 1 944 30 KEEP - Scgb2b12 NO B[a]P_3 chr7 36066436 36066436 T A exonic Gpatch1 nonsynonymous SNV NM_026181:c.A2677T:p.S893C exonic Gpatch1 nonsynonymous SNV uc009gjq.1:c.A2677T:p.S893C exonic ENSMUSG00000063808 nonsynonymous SNV ENSMUST00000079693:c.A2677T:p.S893C 7qB1 NA NA chr7 36066436 TGCxATT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 309 2 0 76.7017 0.24 0.02 1.880344 114 36 2856 954 70 60 0 0 TT 36.648013 122 0 3233 0 KEEP - Gpatch1 NO B[a]P_3 chr7 3866787 3866787 C A intronic "Lilra6,Pira1" NA NA intronic "Lilra6,Pira1,Pira2" NA NA intronic ENSMUSG00000030427 NA NA 7qA1 "Score=0.942681;Name=No.96083,chr7:4224202" NA chr7 3866787 CATxACA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 258 0 0 83.035847 0.507463 0.02 1.001175 33 34 924 870 60 60 0 0 CC 51.129197 170 0 4837 0 KEEP NA Lilra6 YES B[a]P_3 chr7 4711573 4711573 C A intronic Fam71e2 NA NA intronic Fam71e2 NA NA ncRNA_intronic ENSMUSG00000092518 NA NA 7qA1 NA NA chr7 4711573 ACAxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 51 4 0 26.812968 0.714286 0.02 -0.122584 4 10 101 257 60 60 0 0 CC 9.316527 31 0 788 0 KEEP - Fam71e2 YES B[a]P_3 chr7 49391946 49391946 T G exonic Vmn2r60 nonsynonymous SNV NM_001105057:c.T802G:p.S268A exonic Vmn2r60 nonsynonymous SNV uc012fiw.1:c.T802G:p.S268A exonic ENSMUSG00000090619 nonsynonymous SNV ENSMUST00000166447:c.T802G:p.S268A 7qB3 "Score=0.90254;Name=No.101196,chr7:48941246" NA chr7 49391946 TCAxCAG T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 146 0 0 56.498786 0.525 0.02 -0.35067 19 21 478 585 60 60 0 0 TT 28.571754 95 0 2591 0 KEEP + Vmn2r60 NO B[a]P_3 chr7 4959972 4959972 C A exonic Fiz1 nonsynonymous SNV NM_001110328:c.G1148T:p.R383L exonic Fiz1 nonsynonymous SNV uc009eze.2:c.G1148T:p.R383L exonic ENSMUSG00000061374 nonsynonymous SNV ENSMUST00000077385:c.G1148T:p.R383L 7qA1 NA NA chr7 4959972 GCAxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 112 1 0 40.551299 0.432432 0.02 -0.332904 21 16 462 439 60 60 0 0 CC 18.899433 63 0 1441 0 KEEP - Fiz1 YES B[a]P_3 chr7 50719432 50719432 G C intergenic "Etfb(dist=6262),Iglon5(dist=8845)" NA NA exonic Vsig10l nonsynonymous SNV uc009gmu.1:c.G35C:p.R12P exonic ENSMUSG00000070604 nonsynonymous SNV ENSMUST00000094504:c.G35C:p.R12P 7qB4 NA NA chr7 50719432 TTCxAGG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 111 0 0 77.995724 0.595745 0.02 -0.411917 19 28 445 784 60 60 0 0 GG 14.723332 49 0 1242 0 KEEP NA Etfb NO B[a]P_3 chr7 50932207 50932207 G A exonic Ctu1 nonsynonymous SNV NM_145582:c.G919A:p.G307S exonic Ctu1 nonsynonymous SNV uc009gnh.1:c.G919A:p.G307S exonic ENSMUSG00000038888 nonsynonymous SNV ENSMUST00000038332:c.G919A:p.G307S 7qB4 NA NA chr7 50932207 GATxGCC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.64127 0.641347 0.999879 52 0 0 16.891519 0.296296 0.02 -0.245319 19 8 517 202 60 60 0 0 GG 6.618243 22 0 630 0 KEEP + Ctu1 NO B[a]P_3 chr7 50949508 50949508 G T exonic Klk14 synonymous SNV NM_174866:c.G393T:p.V131V exonic Klk14 synonymous SNV uc009gni.1:c.G393T:p.V131V exonic ENSMUSG00000044737 synonymous SNV ENSMUST00000056329:c.G393T:p.V131V 7qB4 NA NA chr7 50949508 TGTxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.22917 0.229173 0.999988 46 0 0 31.282178 0.785714 0.02 -0.131473 3 11 83 292 60 60 0 0 GG 8.121132 27 0 761 0 KEEP + Klk14 YES B[a]P_3 chr7 51097697 51097697 C A exonic Klk5 synonymous SNV NM_026806:c.C12A:p.T4T exonic Klk5 synonymous SNV uc009gnx.1:c.C12A:p.T4T exonic ENSMUSG00000074155 synonymous SNV ENSMUST00000048444:c.C12A:p.T4T 7qB4 NA NA chr7 51097697 GACxGGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 84 0 0 26.58871 0.366667 0.02 -0.262933 19 11 482 299 60 60 0 0 CC 12.603081 42 0 1061 0 KEEP + Klk5 YES B[a]P_3 chr7 51271513 51271513 C A exonic "Egfbp2,Klk1b26" synonymous SNV NM_010644:c.C474A:p.G158G exonic Klk1b26 synonymous SNV uc009gof.2:c.C474A:p.G158G exonic ENSMUSG00000053719 synonymous SNV ENSMUST00000048945:c.C474A:p.G158G 7qB4 NA NA chr7 51271513 GGGxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 212 0 0 45.363745 0.38 0.02 1.142143 31 19 835 507 60 60 0 0 CC 39.685449 132 0 3660 0 KEEP NA Egfbp2 YES B[a]P_3 chr7 51484004 51484004 C A exonic Klk1 nonsynonymous SNV NM_010639:c.C313A:p.L105I exonic Klk1 nonsynonymous SNV uc009goo.1:c.C313A:p.L105I exonic ENSMUSG00000063903 nonsynonymous SNV ENSMUST00000075162:c.C313A:p.L105I 7qB4 NA NA chr7 51484004 AGCxTCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 226 2 1 48.287809 0.487805 0.02 -0.368159 21 20 588 511 60 60 0 0 CC 42.098584 140 0 3928 0 KEEP + Klk1 YES B[a]P_3 chr7 51796991 51796991 C A intronic Pold1 NA NA intronic Pold1 NA NA intronic ENSMUSG00000038644 NA NA 7qB4 NA NA chr7 51796991 AGGxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 162 0 0 54.582804 0.512195 0.02 -0.359364 20 21 495 569 60 60 0 0 CC 31.544958 105 0 2587 0 KEEP - Pold1 YES B[a]P_3 chr7 52084522 52084522 T G exonic Nup62 nonsynonymous SNV NM_053074:c.T590G:p.L197R exonic Nup62 nonsynonymous SNV uc009gqw.2:c.T590G:p.L197R exonic ENSMUSG00000043858 nonsynonymous SNV ENSMUST00000171304:c.T590G:p.L197R 7qB4 NA NA chr7 52084522 CTCxGGT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 82 0 0 6.924188 0.121212 0.02 -0.298071 29 4 767 103 60 60 0 0 TT 11.423491 38 0 1031 0 KEEP + Nup62 NO B[a]P_3 chr7 52159489 52159489 C A exonic Ap2a1 nonsynonymous SNV NM_001077264:c.G1823T:p.R608L exonic Ap2a1 nonsynonymous SNV uc009grv.1:c.G1823T:p.R608L exonic ENSMUSG00000060279 nonsynonymous SNV ENSMUST00000085399:c.G1823T:p.R608L 7qB4 NA NA chr7 52159489 TCCxGCT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 65 0 0 30.006752 0.48 0.02 -0.219125 13 12 331 318 60 60 0 0 CC 10.819301 36 0 924 0 KEEP - Ap2a1 YES B[a]P_3 chr7 52301657 52301657 C A exonic Prr12 stopgain SNV NM_175022:c.G3754T:p.E1252X exonic Prr12 stopgain SNV uc009gsu.1:c.G3754T:p.E1252X exonic ENSMUSG00000046574 stopgain SNV ENSMUST00000057293:c.G3754T:p.E1252X 7qB4 NA NA chr7 52301657 TCTxCCG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 113 0 0 52.1714 0.6 0.02 -0.306818 14 21 391 524 60 60 0 0 CC 19.552978 65 0 1845 0 KEEP - Prr12 YES B[a]P_3 chr7 52592239 52592239 C A exonic Hrc synonymous SNV NM_010473:c.C1443A:p.A481A exonic Hrc synonymous SNV uc009gur.1:c.C1443A:p.A481A exonic ENSMUSG00000038239 synonymous SNV ENSMUST00000041981:c.C1443A:p.A481A 7qB4 NA NA chr7 52592239 GGCxCCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077168 0.077336 0.997832 27 0 0 11.59042 0.555556 0.02 -0.078835 4 5 109 119 60 60 0 0 CC 4.81278 16 0 448 0 KEEP + Hrc YES B[a]P_3 chr7 52840889 52840889 G C exonic Bcat2 nonsynonymous SNV NM_001243052:c.G520C:p.A174P exonic Bcat2 nonsynonymous SNV uc009gwc.1:c.G640C:p.A214P exonic ENSMUSG00000030826 nonsynonymous SNV ENSMUST00000033098:c.G640C:p.A214P 7qB4 NA NA chr7 52840889 CTGxCGG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 144 0 0 55.694829 0.525 0.02 -0.350695 19 21 518 577 60 60 0 0 GG 26.039448 87 0 2318 0 KEEP + Bcat2 NO B[a]P_3 chr7 52884428 52884428 C A exonic Rasip1 nonsynonymous SNV NM_028544:c.C782A:p.A261D exonic Rasip1 nonsynonymous SNV uc009gwi.1:c.C782A:p.A261D exonic ENSMUSG00000044562 nonsynonymous SNV ENSMUST00000057927:c.C782A:p.A261D 7qB4 NA NA chr7 52884428 AGGxCTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.999869 37 1 0 13.184195 0.625 0.02 -0.070136 3 5 81 131 60 60 0 0 CC 6.313682 21 0 565 0 KEEP + Rasip1 YES B[a]P_3 chr7 53272834 53272834 C T intronic Abcc6 NA NA intronic Abcc6 NA NA intronic ENSMUSG00000030834 NA NA 7qB4 NA NA chr7 53272834 ACAxCTC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.999859 39 0 0 14.36324 0.461538 0.02 -0.122734 7 6 190 154 60 60 0 0 CC 5.403883 18 0 473 0 KEEP - Abcc6 NO B[a]P_3 chr7 53272888 53272888 A G exonic Abcc6 synonymous SNV NM_018795:c.T636C:p.A212A exonic Abcc6 synonymous SNV uc009gya.1:c.T636C:p.A212A exonic ENSMUSG00000030834 synonymous SNV ENSMUST00000002850:c.T636C:p.A212A 7qB4 NA NA chr7 53272888 CTCxGCC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.999859 37 0 0 8.226002 0.307692 0.02 -0.12257 9 4 230 98 60 60 0 0 AA 5.398317 18 0 478 0 KEEP - Abcc6 NO B[a]P_3 chr7 53317214 53317214 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53317214 GGGxACA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 110 0 0 38.146703 0.46875 0.02 -0.333198 17 15 471 406 70 70 0 0 GG 18.342384 61 0 1708 0 KEEP + Nomo1 NO B[a]P_3 chr7 53323993 53323993 C T intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53323993 TCCxTTG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353179 0.353947 0.997832 39 0 0 26.459778 0.526316 0.02 -0.166609 9 10 253 274 60 60 0 0 CC 4.813261 16 0 459 0 KEEP + Nomo1 NO B[a]P_3 chr7 53378318 53378318 G T intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53378318 GGAxAGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 47 0 0 14.705671 0.368421 0.02 -0.166562 12 7 336 168 60 60 0 0 GG 7.219822 24 0 686 0 KEEP - Abcc8 YES B[a]P_3 chr7 53379241 53379241 T C intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53379241 CAGxCCC T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 78 0 0 22.828066 0.294118 0.02 -0.298058 24 10 619 270 60 60 0 0 TT 10.526153 35 0 953 0 KEEP - Abcc8 NO B[a]P_3 chr7 53435158 53435158 G A intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53435158 GCTxGGC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043483 0.043787 0.993072 19 0 0 13.262186 0.714286 0.02 -0.061364 2 5 57 127 60 60 0 0 GG 3.308892 11 0 311 0 KEEP - Abcc8 NO B[a]P_3 chr7 53501885 53501885 C A exonic Otog synonymous SNV NM_013624:c.C403A:p.R135R exonic Otog synonymous SNV uc009gyi.1:c.C403A:p.R135R exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000009631:c.C403A:p.R135R 7qB4 NA NA chr7 53501885 GAGxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260933 0.260965 0.999879 45 2 0 21.118057 0.533333 0.02 -0.140211 7 8 169 218 60 60 0 0 CC 6.607239 22 0 542 0 KEEP + Otog YES B[a]P_3 chr7 53507427 53507427 G C exonic Otog synonymous SNV NM_013624:c.G1179C:p.L393L exonic Otog synonymous SNV uc009gyi.1:c.G1179C:p.L393L exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000009631:c.G1179C:p.L393L 7qB4 NA NA chr7 53507427 TCTxCAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.64111 0.641347 0.99963 65 1 0 47.558761 0.607143 0.02 -0.245526 11 17 300 476 60 60 0 0 GG 8.721853 29 0 802 0 KEEP + Otog NO B[a]P_3 chr7 53517209 53517209 C A intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53517209 GGCxTGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076843 0.077336 0.993634 26 0 0 19.062897 0.777778 0.02 -0.078892 2 7 55 178 60 60 0 0 CC 3.6099 12 0 343 0 KEEP + Otog YES B[a]P_3 chr7 53543464 53543464 C T exonic Otog synonymous SNV NM_013624:c.C5226T:p.I1742I exonic Otog synonymous SNV uc009gyk.2:c.C5226T:p.I1742I exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000164538:c.C5226T:p.I1742I 7qB4 NA NA chr7 53543464 CATxGAC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.999859 45 2 0 18.683442 0.363636 0.02 -0.191774 14 8 324 211 60 60 0 0 CC 5.407814 18 0 455 0 KEEP + Otog NO B[a]P_3 chr7 53553863 53553863 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553863 ATGxATC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 63 0 0 27.255487 0.444444 0.02 -0.254133 15 12 411 296 60 60 0 0 CC 8.420207 28 0 768 0 KEEP + Otog NO B[a]P_3 chr7 53553865 53553865 T C intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553865 GCAxCCA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 64 0 0 24.643114 0.37037 0.02 -0.254227 17 10 429 276 60 60 0 0 TT 8.72042 29 0 784 0 KEEP + Otog NO B[a]P_3 chr7 53553867 53553867 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553867 ATCxACC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 66 0 0 26.097854 0.392857 0.02 -0.263019 17 11 462 290 60 60 0 0 CC 9.023407 30 0 837 0 KEEP + Otog NO B[a]P_3 chr7 53633192 53633192 C G intronic Myod1 NA NA intronic Myod1 NA NA intronic ENSMUSG00000009471 NA NA 7qB4 NA NA chr7 53633192 GTGxGTA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 53 0 0 19.87374 0.4 0.02 -0.184026 12 8 285 219 60 60 0 0 CC 5.031958 24 1 567 20 KEEP + Myod1 NO B[a]P_3 chr7 53890970 53890970 A G intronic Sergef NA NA intronic Sergef NA NA intronic ENSMUSG00000030839 NA NA 7qB4 NA NA chr7 53890970 TCAxCAT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053793 0.054137 0.993634 20 0 0 10.599936 0.5 0.02 -0.070138 4 4 102 111 60 60 0 0 AA 3.607242 12 0 316 0 KEEP - Sergef NO B[a]P_3 chr7 53997787 53997787 G T intronic Saa1 NA NA intronic Saa1 NA NA intronic ENSMUSG00000074115 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:54006945" NA chr7 53997787 GGGxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 44 0 2 14.546943 0.5 0.02 -0.105204 6 6 165 153 60 60 0 0 GG 6.918436 23 0 646 0 KEEP - Saa1 YES B[a]P_3 chr7 54008756 54008756 T A intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008756 TTTxGGG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 50 1 0 12.967874 0.352941 0.02 -0.149021 11 6 291 149 60 60 0 0 TT 9.023745 30 0 836 0 KEEP + Saa2 NO B[a]P_3 chr7 54008763 54008763 T C intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008763 TCAxGTT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 54 1 0 18.469869 0.4 0.02 -0.17528 12 8 297 205 60 60 0 0 TT 9.006226 30 0 788 0 KEEP + Saa2 NO B[a]P_3 chr7 54009461 54009461 A C exonic Saa2 synonymous SNV NM_011314:c.A351C:p.G117G exonic Saa2 synonymous SNV uc009gzb.2:c.A351C:p.G117G exonic ENSMUSG00000057465 synonymous SNV ENSMUST00000075982:c.A351C:p.G117G 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54009461 TGGxCTG A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 77 3 1 7.032887 0.272727 0.02 -0.113951 8 3 212 84 60 60 0 0 AA 14.435475 48 0 1309 0 KEEP + Saa2 NO B[a]P_3 chr7 54028653 54028653 A G intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54028653 AATxCCA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 102 4 0 52.053828 0.571429 0.02 -0.324339 15 20 380 529 60 60 0 0 AA 16.527518 55 0 1431 0 KEEP - Hps5 NO B[a]P_3 chr7 54032439 54032439 T C intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54032439 CAGxTTA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 47 0 0 19.642456 0.538462 0.02 -0.113997 6 7 161 202 60 60 0 0 TT 8.420536 28 0 765 0 KEEP - Hps5 NO B[a]P_3 chr7 54070838 54070838 A G intronic Gtf2h1 NA NA intronic Gtf2h1 NA NA intronic ENSMUSG00000006599 NA NA 7qB4 NA NA chr7 54070838 CTCxGGT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 75 0 0 9.384008 0.4 0.02 -0.087675 6 4 167 104 60 60 0 0 AA 14.125583 47 0 1302 0 KEEP + Gtf2h1 NO B[a]P_3 chr7 54104300 54104300 A G intronic Ldha NA NA intronic Ldha NA NA intronic ENSMUSG00000063229 NA NA 7qB4 NA NA chr7 54104300 AGAxTCA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.999859 30 0 0 12.773518 0.5 0.02 -0.087677 5 5 135 134 60 60 0 0 AA 5.411271 18 0 474 0 KEEP + Ldha NO B[a]P_3 chr7 54441140 54441140 A T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.T902A:p.L301Q 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441140 CACxGCT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 189 4 0 8.877768 0.111111 0.02 1.080043 40 5 1074 133 60 29 0 0 AA 29.474809 98 0 2697 0 KEEP - Mrgpra6 NO B[a]P_3 chr7 54441179 54441179 G T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.C863A:p.P288H 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441179 TCAxGTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 212 11 0 15.786928 0.126761 0.02 0.710835 62 9 1734 232 60 57 0 0 GG 29.167216 97 0 2750 0 KEEP - Mrgpra6 YES B[a]P_3 chr7 54441206 54441206 C T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.G836A:p.S279N 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441206 GCAxTCT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 203 10 2 11.928292 0.089744 0.02 0.666991 71 7 1969 188 60 60 0 0 CC 25.567853 85 0 2393 0 KEEP - Mrgpra6 NO B[a]P_3 chr7 54490319 54490319 C T exonic Mrgpra9 synonymous SNV NM_001177566:c.G966A:p.V322V exonic Mrgpra9 synonymous SNV uc012fla.1:c.G966A:p.V322V exonic ENSMUSG00000074111 synonymous SNV ENSMUST00000098436:c.G963A:p.V321V 7qB4 NA NA chr7 54490319 CTCxACC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 208 0 0 17.026674 0.205128 0.02 -0.368253 31 8 845 218 60 29 0 0 CC 40.294024 134 0 3797 0 KEEP - Mrgpra9 NO B[a]P_3 chr7 54490320 54490320 A G exonic Mrgpra9 nonsynonymous SNV NM_001177566:c.T965C:p.V322A exonic Mrgpra9 nonsynonymous SNV uc012fla.1:c.T965C:p.V322A exonic ENSMUSG00000074111 nonsynonymous SNV ENSMUST00000098436:c.T962C:p.V321A 7qB4 NA NA chr7 54490320 TCCxCCA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 205 0 0 17.028205 0.210526 0.02 -0.359439 30 8 781 217 60 29 0 0 AA 39.683969 132 0 3533 0 KEEP - Mrgpra9 NO B[a]P_3 chr7 54490333 54490333 C G exonic Mrgpra9 nonsynonymous SNV NM_001177566:c.G952C:p.A318P exonic Mrgpra9 nonsynonymous SNV uc012fla.1:c.G952C:p.A318P exonic ENSMUSG00000074111 nonsynonymous SNV ENSMUST00000098436:c.G949C:p.A317P 7qB4 NA NA chr7 54490333 CAGxTGT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 201 0 0 16.928252 0.2 0.02 -0.377055 32 8 889 218 60 29 0 0 CC 40.275512 134 0 3744 0 KEEP - Mrgpra9 NO B[a]P_3 chr7 54490553 54490553 G A exonic Mrgpra9 synonymous SNV NM_001177566:c.C732T:p.C244C exonic Mrgpra9 synonymous SNV uc012fla.1:c.C732T:p.C244C exonic ENSMUSG00000074111 synonymous SNV ENSMUST00000098436:c.C729T:p.C243C 7qB4 NA NA chr7 54490553 CCCxCAG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 196 1 0 120.506209 0.97561 0.02 -0.368175 1 40 28 1035 60 60 0 0 GG 39.935321 133 0 3244 0 KEEP - Mrgpra9 NO B[a]P_3 chr7 54681932 54681932 T A exonic Mrgpra2a nonsynonymous SNV NM_001172588:c.A947T:p.E316V exonic Mrgpra2a nonsynonymous SNV uc009hag.2:c.A947T:p.E316V exonic ENSMUSG00000039854 nonsynonymous SNV ENSMUST00000060569:c.A869T:p.E290V 7qB4 "Score=0.992523;Name=No.101347,chr7:54709200" NA chr7 54681932 GTCxCAG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 202 0 20 23.261822 0.261905 0.02 -0.377005 31 11 839 285 46 43 0 0 TT 39.094587 130 0 3632 0 KEEP - Mrgpra2a NO B[a]P_3 chr7 54845133 54845133 C A exonic Mrgpra3 synonymous SNV NM_153067:c.G414T:p.L138L exonic Mrgpra3 synonymous SNV uc009haj.2:c.G414T:p.L138L exonic ENSMUSG00000078698 synonymous SNV ENSMUST00000046797:c.G333T:p.L111L 7qB4 "Score=0.935045;Name=No.101352,chr7:54805085" NA chr7 54845133 AGAxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 98 0 5 10.481519 0.238095 0.02 -0.245504 16 5 438 131 60 29 0 0 CC 18.34806 61 0 1713 0 KEEP - Mrgpra3 YES B[a]P_3 chr7 55236551 55236551 A T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.T671A:p.L224H exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.T671A:p.L224H exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.T671A:p.L224H 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236551 AGAxGAA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 137 2 1 10.506482 0.12 0.02 1.053754 44 6 1190 156 60 60 0 0 AA 18.945799 63 0 1739 0 KEEP - Mrgpra4 NO B[a]P_3 chr7 55236601 55236601 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G621A:p.T207T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G621A:p.T207T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G621A:p.T207T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236601 TTTxGTC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 191 5 2 27.185023 0.206349 0.02 0.887495 50 13 1270 349 60 60 0 0 CC 27.652936 92 0 2412 0 KEEP - Mrgpra4 NO B[a]P_3 chr7 55236643 55236643 G A exonic Mrgpra4 synonymous SNV NM_153524:c.C579T:p.T193T exonic Mrgpra4 synonymous SNV uc009hak.1:c.C579T:p.T193T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.C579T:p.T193T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236643 CAGxGTG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 223 4 1 22.53057 0.186441 0.02 0.948657 48 11 1309 296 60 60 0 0 GG 34.279803 114 0 3142 0 KEEP - Mrgpra4 NO B[a]P_3 chr7 55236661 55236661 T C exonic Mrgpra4 nonsynonymous SNV NM_153524:c.A561G:p.I187M exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.A561G:p.I187M exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.A561G:p.I187M 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236661 GACxATA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 229 3 1 11.541253 0.109091 0.02 1.07294 49 6 1273 169 60 29 0 0 TT 36.065064 120 0 3247 0 KEEP - Mrgpra4 NO B[a]P_3 chr7 55236700 55236700 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G522A:p.T174T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G522A:p.T174T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G522A:p.T174T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236700 GTTxGTT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 200 0 0 68.336763 0.541667 0.02 1.080499 22 26 530 703 60 60 0 0 CC 33.35385 111 0 2837 0 KEEP - Mrgpra4 NO B[a]P_3 chr7 55276756 55276756 A G exonic Mrgprx1 synonymous SNV NM_207540:c.T612C:p.I204I exonic Mrgprx1 synonymous SNV uc009hal.1:c.T612C:p.I204I exonic ENSMUSG00000070552 synonymous SNV ENSMUST00000094390:c.T612C:p.I204I 7qB4 NA NA chr7 55276756 GAGxATC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076975 0.077336 0.995343 24 0 0 10.422848 0.444444 0.02 -0.078919 5 4 137 112 60 60 0 0 AA 4.195495 14 0 372 0 KEEP - Mrgprx1 NO B[a]P_3 chr7 55277022 55277022 T C exonic Mrgprx1 nonsynonymous SNV NM_207540:c.A346G:p.I116V exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.A346G:p.I116V exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.A346G:p.I116V 7qB4 NA NA chr7 55277022 GGAxGCT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 61 0 0 19.607214 0.375 0.02 -0.227468 15 9 371 222 60 60 0 0 TT 8.025024 29 1 785 6 KEEP - Mrgprx1 NO B[a]P_3 chr7 55277271 55277271 C T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.G97A:p.V33I exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.G97A:p.V33I exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.G97A:p.V33I 7qB4 NA NA chr7 55277271 GGAxCAG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353898 0.353947 0.999863 42 0 0 28.950537 0.6875 0.02 -0.166303 5 11 116 280 60 60 0 0 CC 6.015807 20 0 559 0 KEEP - Mrgprx1 NO B[a]P_3 chr7 55277275 55277275 G T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.C93A:p.F31L exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.C93A:p.F31L exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.C93A:p.F31L 7qB4 NA NA chr7 55277275 CAGxAAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423422 0.423478 0.999869 44 0 0 27.723251 0.611111 0.02 -0.183992 7 11 176 277 60 60 0 0 GG 6.316971 21 0 593 0 KEEP - Mrgprx1 YES B[a]P_3 chr7 55277282 55277282 A G exonic Mrgprx1 nonsynonymous SNV NM_207540:c.T86C:p.L29P exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.T86C:p.L29P exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.T86C:p.L29P 7qB4 NA NA chr7 55277282 GACxGGG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423422 0.423478 0.999869 43 0 0 26.209568 0.611111 0.02 -0.183996 7 11 186 262 60 60 0 0 AA 6.315881 21 0 575 0 KEEP - Mrgprx1 NO B[a]P_3 chr7 55424203 55424203 G C exonic Mrgprb5 synonymous SNV NM_207538:c.C153G:p.V51V exonic Mrgprb5 synonymous SNV uc009ham.1:c.C153G:p.V51V exonic ENSMUSG00000070551 synonymous SNV ENSMUST00000094389:c.C153G:p.V51V 7qB4 NA NA chr7 55424203 TAGxACT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.321674 0.322807 0.99649 35 2 0 17.876485 0.4375 0.02 -0.157838 9 7 249 193 60 60 0 0 GG 4.512228 15 0 425 0 KEEP - Mrgprb5 NO B[a]P_3 chr7 55454369 55454369 C T exonic Mrgprb4 synonymous SNV NM_205795:c.G180A:p.R60R exonic Mrgprb4 synonymous SNV uc009han.1:c.G180A:p.R60R exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.G180A:p.R60R 7qB4 NA NA chr7 55454369 ATTxCTA C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58289 0.58293 0.999931 56 2 0 8.364934 0.210526 0.02 -0.22789 15 4 401 107 60 60 0 0 CC 7.512868 25 0 693 0 KEEP - Mrgprb4 NO B[a]P_3 chr7 55644240 55644240 C T exonic Mrgprb8 synonymous SNV NM_207539:c.C288T:p.I96I exonic Mrgprb8 synonymous SNV uc009hao.2:c.C288T:p.I96I exonic ENSMUSG00000050870 synonymous SNV ENSMUST00000056676:c.C288T:p.I96I 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644240 CATxGAC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 146 1 0 72.372764 0.538462 0.02 1.141625 24 28 588 746 60 60 0 0 CC 19.462916 74 1 1902 26 KEEP + Mrgprb8 NO B[a]P_3 chr7 55644712 55644712 C T exonic Mrgprb8 nonsynonymous SNV NM_207539:c.C760T:p.P254S exonic Mrgprb8 nonsynonymous SNV uc009hao.2:c.C760T:p.P254S exonic ENSMUSG00000050870 nonsynonymous SNV ENSMUST00000056676:c.C760T:p.P254S 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644712 ATGxCTT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552849 0.552887 0.999931 58 0 0 25.791999 0.44 0.02 -0.219117 14 11 378 280 60 60 0 0 CC 7.519446 25 0 691 0 KEEP + Mrgprb8 NO B[a]P_3 chr7 55702613 55702613 T C exonic Mrgprb1 nonsynonymous SNV NM_205810:c.A920G:p.K307R exonic Mrgprb1 nonsynonymous SNV uc009hap.1:c.A920G:p.K307R exonic ENSMUSG00000070547 nonsynonymous SNV ENSMUST00000094384:c.A920G:p.K307R 7qB4 NA NA chr7 55702613 AGCxTGA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 111 0 0 48.053987 0.514286 0.02 -0.306896 17 18 462 500 60 60 0 0 TT 19.550963 65 0 1806 0 KEEP - Mrgprb1 NO B[a]P_3 chr7 56133457 56133457 T A exonic E2f8 synonymous SNV NM_001013368:c.A306T:p.S102S exonic E2f8 synonymous SNV uc009haz.2:c.A306T:p.S102S exonic ENSMUSG00000046179 synonymous SNV ENSMUST00000058745:c.A306T:p.S102S 7qB4 NA NA chr7 56133457 TCCxGAT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 135 0 0 54.977318 0.512195 0.02 -0.368254 20 21 534 573 60 60 0 0 TT 23.149536 77 0 2102 0 KEEP - E2f8 NO B[a]P_3 chr7 56803423 56803423 T C exonic Nav2 synonymous SNV NM_175272:c.T3429C:p.S1143S exonic Nav2 synonymous SNV uc009hbm.2:c.T3429C:p.S1143S exonic ENSMUSG00000052512 synonymous SNV ENSMUST00000064395:c.T3429C:p.S1143S 7qB4 NA NA chr7 56803423 CAGxGGG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043781 0.043787 0.999859 29 0 0 9.829118 0.571429 0.02 -0.061342 3 4 75 100 60 60 0 0 TT 5.405568 18 0 465 0 KEEP + Nav2 NO B[a]P_3 chr7 57484324 57484324 T G intronic Nell1 NA NA intronic Nell1 NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57484324 GTCxGCT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162452 0.162467 0.999909 42 1 0 9.424173 0.307692 0.02 -0.11398 9 4 239 110 60 60 0 0 TT 7.217961 24 0 656 0 KEEP + Nell1 NO B[a]P_3 chr7 57855795 57855795 G A UTR3 4933405O20Rik NA NA UTR3 4933405O20Rik NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57855795 AGAxAGT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099086 0.099721 0.993634 24 0 0 13.198557 0.555556 0.02 -0.087684 4 5 111 135 60 60 0 0 GG 3.609479 12 0 337 0 KEEP + 4933405O20Rik NO B[a]P_3 chr7 58901654 58901654 G T intronic Slc17a6 NA NA intronic Slc17a6 NA NA intronic ENSMUSG00000030500 NA NA 7qB5 NA NA chr7 58901654 ATTxTGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 107 0 0 32.400667 0.464286 0.02 -0.254267 15 13 409 346 60 60 0 0 GG 20.440572 68 0 1829 0 KEEP + Slc17a6 YES B[a]P_3 chr7 59116908 59116908 G A exonic Fancf synonymous SNV NM_001115087:c.C717T:p.A239A exonic Fancf synonymous SNV uc012flg.1:c.C717T:p.A239A exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.C717T:p.A239A 7qB5 NA NA chr7 59116908 CTTxGCT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 92 4 0 45.091069 0.6 0.02 -0.261627 12 18 321 454 60 60 0 0 GG 13.52681 45 0 1245 0 KEEP - Fancf NO B[a]P_3 chr7 59117508 59117508 A G exonic Fancf synonymous SNV NM_001115087:c.T117C:p.R39R exonic Fancf synonymous SNV uc012flg.1:c.T117C:p.R39R exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.T117C:p.R39R 7qB5 NA NA chr7 59117508 ATAxCGC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 71 0 0 31.158025 0.631579 0.02 -0.166292 7 12 183 309 60 60 0 0 AA 11.67874 43 1 1166 11 KEEP - Fancf NO B[a]P_3 chr7 59117648 59117648 C T upstream Fancf NA NA UTR5 Gas2 NA NA UTR5 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59117648 CATxCCG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 1 55 0 0 24.238159 0.625 0.02 -0.157122 6 10 164 241 60 60 0 0 CC 11.067771 37 0 1022 0 KEEP - Fancf NO B[a]P_3 chr7 59220735 59220735 G A intronic Gas2 NA NA UTR3 Gas2 NA NA UTR3 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59220735 TGAxCCT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 62 0 0 8.031117 0.266667 0.02 -0.166571 11 4 309 99 60 70 0 0 GG 10.223343 34 0 926 0 KEEP + Gas2 NO B[a]P_3 chr7 63068956 63068956 A T intronic Tubgcp5 NA NA intronic Tubgcp5 NA NA intronic ENSMUSG00000033790 NA NA 7qB5 NA NA chr7 63068956 TGCxGGC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 89 2 0 21.497287 0.375 0.02 -0.210425 15 9 406 241 60 60 0 0 AA 14.738777 49 0 1371 0 KEEP + Tubgcp5 NO B[a]P_3 chr7 63147515 63147515 G C intronic Cyfip1 NA NA exonic Cyfip1 nonsynonymous SNV uc009hdj.1:c.G1267C:p.G423R exonic ENSMUSG00000030447 nonsynonymous SNV ENSMUST00000168271:c.G1267C:p.G423R 7qB5 NA NA chr7 63147515 ATCxGAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 71 3 0 25.012375 0.5 0.02 -0.219031 11 11 287 264 60 60 0 0 GG 10.824513 36 0 965 0 KEEP + Cyfip1 NO B[a]P_3 chr7 63148642 63148642 C T intronic Cyfip1 NA NA intronic Cyfip1 NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63148642 CTCxCTG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036491 0.036766 0.99254 18 0 0 14.608439 0.833333 0.02 -0.052608 1 5 28 134 60 60 0 0 CC 2.70719 9 0 252 0 KEEP + Cyfip1 NO B[a]P_3 chr7 63181924 63181924 G A intronic Cyfip1 NA NA intronic "Cyfip1,Shyc" NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63181924 GGGxGGG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 50 0 0 37.942042 0.8125 0.02 -0.175365 3 13 83 351 60 70 0 2 GG 6.015121 20 0 549 0 KEEP + Cyfip1 NO B[a]P_3 chr7 63327733 63327733 A G exonic Herc2 synonymous SNV NM_010418:c.A258G:p.E86E exonic "Herc2,rjs" synonymous SNV uc009hdw.1:c.A258G:p.E86E exonic ENSMUSG00000030451 synonymous SNV ENSMUST00000041015:c.A144G:p.E48E 7qB5 NA NA chr7 63327733 AGAxGAG A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353943 0.353947 0.999988 56 0 0 21.000933 0.421053 0.02 -0.166588 11 8 290 228 60 60 0 0 AA 8.121873 27 0 763 0 KEEP + Herc2 NO B[a]P_3 chr7 63409234 63409234 G C exonic Herc2 nonsynonymous SNV NM_010418:c.G6646C:p.G2216R exonic Herc2 nonsynonymous SNV uc009hdv.1:c.G6646C:p.G2216R exonic ENSMUSG00000030451 nonsynonymous SNV ENSMUST00000041015:c.G6532C:p.G2178R 7qB5 NA NA chr7 63409234 GATxGCC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 99 0 0 33.226094 0.416667 0.02 -0.315533 21 15 577 367 60 60 0 0 GG 15.933897 53 0 1462 0 KEEP + Herc2 NO B[a]P_3 chr7 63440089 63440089 T C intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440089 TGGxTGT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322764 0.322807 0.999869 43 0 0 23.574101 0.5 0.02 -0.157814 9 9 235 247 60 60 0 0 TT 6.315743 21 0 572 0 KEEP + Herc2 NO B[a]P_3 chr7 63440091 63440091 G A intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440091 GTTxTGA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 42 0 0 20.868478 0.5 0.02 -0.157784 9 9 246 220 60 60 0 0 GG 6.015478 20 0 556 0 KEEP + Herc2 NO B[a]P_3 chr7 63585644 63585644 G A intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63585644 ATTxAGC G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099658 0.099721 0.999366 31 0 0 7.043185 0.333333 0.02 -0.087688 6 3 172 81 60 60 0 0 GG 5.113871 17 0 485 0 KEEP + Oca2 NO B[a]P_3 chr7 63612621 63612621 C T intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63612621 TTAxTCG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 52 2 0 14.276965 0.4 0.02 -0.131517 9 6 248 158 60 60 0 0 CC 7.520355 25 0 710 0 KEEP + Oca2 NO B[a]P_3 chr7 63791352 63791352 G C exonic Oca2 nonsynonymous SNV NM_021879:c.G2455C:p.G819R exonic Oca2 nonsynonymous SNV uc012flk.1:c.G1402C:p.G468R exonic ENSMUSG00000030450 nonsynonymous SNV ENSMUST00000032633:c.G2455C:p.G819R 7qC NA NA chr7 63791352 ATTxGGA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 136 0 0 62.433665 0.543478 0.02 -0.403221 21 25 582 643 70 60 0 0 GG 20.748463 69 0 1938 0 KEEP + Oca2 NO B[a]P_3 chr7 64677117 64677117 G A exonic Gabra5 synonymous SNV NM_176942:c.C720T:p.S240S exonic Gabra5 synonymous SNV uc009heb.1:c.C720T:p.S240S exonic ENSMUSG00000055078 synonymous SNV ENSMUST00000068456:c.C720T:p.S240S 7qC NA NA chr7 64677117 TGTxCTG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 51 0 0 10.381076 0.3125 0.02 -0.148495 11 5 289 123 60 60 0 0 GG 6.919216 23 0 662 0 KEEP - Gabra5 NO B[a]P_3 chr7 66531403 66531403 A C exonic Ube3a synonymous SNV NM_001033962:c.A558C:p.S186S exonic Ube3a synonymous SNV uc009heg.1:c.A558C:p.S186S exonic ENSMUSG00000025326 synonymous SNV ENSMUST00000085231:c.A729C:p.S243S 7qC NA NA chr7 66531403 TTCxAGG A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 68 0 0 8.415321 0.166667 0.02 -0.210432 20 4 537 112 60 60 0 0 AA 11.116483 37 0 1003 0 KEEP + Ube3a NO B[a]P_3 chr7 66933993 66933993 C T ncRNA_intronic Ipw NA NA ncRNA_intronic Ipw NA NA upstream ENSMUSG00000075937 NA NA 7qC "Score=0.95523;Name=No.101420,chr7:67007294" NA chr7 66933993 TTGxATC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 596 16 94 8.969087 0.070588 0.02 1.780989 79 6 2169 155 60 29 0 0 CC 92.932171 309 0 8727 0 KEEP - Ipw NO B[a]P_3 chr7 6919690 6919690 C A ncRNA_UTR3 Usp29 NA NA ncRNA_UTR3 Usp29 NA NA intergenic "ENSMUSG00000051527(dist=3210),ENSMUSG00000070837(dist=28464)" NA NA 7qA1 NA NA chr7 6919690 GTTxCCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 175 0 0 63.209008 0.541667 0.02 -0.420798 22 26 612 652 60 60 0 0 CC 32.174376 107 0 3027 0 KEEP + Usp29 YES B[a]P_3 chr7 72803726 72803726 G T intronic Tarsl2 NA NA intronic Tarsl2 NA NA intronic ENSMUSG00000030515 NA NA 7qC NA NA chr7 72803726 TCAxAGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.549057 0.552887 0.993072 38 0 0 7.481741 0.181818 0.02 -0.219226 18 4 515 101 60 60 0 0 GG 3.308993 11 0 313 0 KEEP + Tarsl2 YES B[a]P_3 chr7 73316231 73316231 G T exonic Chsy1 nonsynonymous SNV NM_001081163:c.G1327T:p.G443W exonic Chsy1 nonsynonymous SNV uc009hhb.1:c.G1327T:p.G443W exonic ENSMUSG00000032640 nonsynonymous SNV ENSMUST00000036372:c.G1327T:p.G443W 7qC NA NA chr7 73316231 TACxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 157 1 0 42.230408 0.263889 0.02 0.966385 53 19 1327 512 60 60 0 0 GG 20.726304 69 0 1760 0 KEEP + Chsy1 YES B[a]P_3 chr7 74294811 74294811 G C exonic Adamts17 synonymous SNV NM_001033877:c.G3228C:p.R1076R exonic Adamts17 synonymous SNV uc009hhx.1:c.G3228C:p.R1076R exonic ENSMUSG00000058145 synonymous SNV ENSMUST00000107478:c.G3147C:p.R1049R 7qC NA NA chr7 74294811 TCGxGAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999998 88 0 0 19.464079 0.238095 0.02 -0.368159 32 10 867 247 60 60 0 0 GG 10.226988 34 0 950 0 KEEP + Adamts17 NO B[a]P_3 chr7 79372846 79372846 A T intronic Mctp2 NA NA intronic Mctp2 NA NA intronic ENSMUSG00000032776 NA NA 7qD1 NA NA chr7 79372846 TAAxCAG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 111 0 0 27.716208 0.428571 0.02 -0.245456 16 12 425 303 60 60 0 0 AA 20.727403 69 0 1887 0 KEEP - Mctp2 NO B[a]P_3 chr7 86061546 86061546 A C exonic Isg20 nonsynonymous SNV NM_001113527:c.A356C:p.E119A exonic Isg20 nonsynonymous SNV uc009hxv.2:c.A356C:p.E119A exonic ENSMUSG00000039236 nonsynonymous SNV ENSMUST00000120331:c.A356C:p.E119A 7qD3 NA NA chr7 86061546 ATGxGGC A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353932 0.353947 0.999957 51 0 0 19.575096 0.473684 0.02 -0.166503 10 9 272 210 60 60 0 0 AA 7.819215 26 0 721 0 KEEP + Isg20 NO B[a]P_3 chr7 86236125 86236125 G T exonic Acan nonsynonymous SNV NM_007424:c.G1352T:p.R451L exonic Acan nonsynonymous SNV uc009hxw.1:c.G1352T:p.R451L exonic ENSMUSG00000030607 nonsynonymous SNV ENSMUST00000032835:c.G1352T:p.R451L 7qD3 NA NA chr7 86236125 CACxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 42 0 0 41.134156 0.823529 0.02 -0.149048 3 14 77 379 60 60 0 0 GG 6.247922 21 0 496 0 KEEP + Acan YES B[a]P_3 chr7 86921999 86921999 G T exonic Wdr93 nonsynonymous SNV NM_001037927:c.G1799T:p.G600V exonic Wdr93 nonsynonymous SNV uc009hza.1:c.G1799T:p.G600V exonic ENSMUSG00000039099 nonsynonymous SNV ENSMUST00000035622:c.G1799T:p.G600V 7qD3 NA NA chr7 86921999 CAGxAGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 91 0 0 42.091151 0.566667 0.02 -0.262881 13 17 348 429 60 60 0 0 GG 14.135044 47 0 1308 0 KEEP + Wdr93 YES B[a]P_3 chr7 88221889 88221889 G T intronic Alpk3 NA NA intronic Alpk3 NA NA intronic ENSMUSG00000038763 NA NA 7qD3 NA NA chr7 88221889 AGGxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 159 0 0 100.183636 0.6 0.02 0.92153 26 39 692 1006 60 60 0 0 GG 21.280325 71 0 1920 0 KEEP + Alpk3 YES B[a]P_3 chr7 91432678 91432678 C A intronic Arnt2 NA NA intronic Arnt2 NA NA intronic ENSMUSG00000015709 NA NA 7qD3 NA NA chr7 91432678 TGGxAAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423459 0.423478 0.999957 57 0 0 10.881255 0.238095 0.02 -0.184145 16 5 448 135 60 60 0 0 CC 7.821156 26 0 741 0 KEEP - Arnt2 YES B[a]P_3 chr7 92143647 92143647 C A exonic Vmn2r66 synonymous SNV NM_001033878:c.G2064T:p.V688V exonic Vmn2r66 synonymous SNV uc012foh.1:c.G2064T:p.V688V exonic ENSMUSG00000072241 synonymous SNV ENSMUST00000124773:c.G2064T:p.V688V 7qD3 NA NA chr7 92143647 TGAxACA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 231 0 0 34.077025 0.222222 0.02 0.868681 56 16 1541 430 60 60 0 0 CC 36.994656 123 0 3412 0 KEEP - Vmn2r66 YES B[a]P_3 chr7 92381043 92381043 G T exonic Vmn2r68 synonymous SNV NM_001105181:c.C1338A:p.V446V exonic Vmn2r68-ps synonymous SNV uc012foi.1:c.C1338A:p.V446V exonic ENSMUSG00000066432 synonymous SNV ENSMUST00000061074:c.C1338A:p.V446V 7qD3 "Score=0.909935;Name=No.101506,chr7:92878638" NA chr7 92381043 GTTxACT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 160 0 2 40.672048 0.279412 0.02 0.992353 49 19 1366 491 60 60 0 0 GG 23.162267 77 0 2201 0 KEEP - Vmn2r68 YES B[a]P_3 chr7 93734423 93734423 G T exonic Olfr295 nonsynonymous SNV NM_146851:c.G637T:p.A213S exonic Olfr295 nonsynonymous SNV uc009ifd.1:c.G637T:p.A213S exonic ENSMUSG00000059319 nonsynonymous SNV ENSMUST00000078447:c.G637T:p.A213S 7qD3 "Score=0.916591;Name=No.101516,chr7:93700865" NA chr7 93734423 ATTxCCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 247 2 0 7.572045 0.056818 0.02 0.728958 83 5 2239 135 60 48 0 0 GG 41.192778 137 0 3770 0 KEEP + Olfr295 YES B[a]P_3 chr7 93960077 93960077 C T exonic Vmn2r77 synonymous SNV NM_001105188:c.C2100T:p.P700P exonic Vmn2r77 synonymous SNV uc012foq.1:c.C2100T:p.P700P exonic ENSMUSG00000090949 synonymous SNV ENSMUST00000164996:c.C2100T:p.P700P 7qD3 "Score=0.908333;Name=No.101517,chr7:94102599" NA chr7 93960077 TCCxATA C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 313 0 0 174.397562 0.580357 0.02 2.301957 47 65 1293 1765 60 60 0 0 CC 50.537755 168 0 4786 0 KEEP + Vmn2r77 NO B[a]P_3 chr7 93960078 93960078 A T exonic Vmn2r77 nonsynonymous SNV NM_001105188:c.A2101T:p.I701L exonic Vmn2r77 nonsynonymous SNV uc012foq.1:c.A2101T:p.I701L exonic ENSMUSG00000090949 nonsynonymous SNV ENSMUST00000164996:c.A2101T:p.I701L 7qD3 "Score=0.908333;Name=No.101517,chr7:94102599" NA chr7 93960078 CCCxTAT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 312 0 0 167.135844 0.572727 0.02 2.221578 47 63 1207 1697 60 60 0 0 AA 51.124468 170 0 4584 0 KEEP + Vmn2r77 NO B[a]P_3 chr8 103161430 103161430 A G intergenic "Cdh8(dist=1221073),Cdh11(dist=1995465)" NA NA intergenic "AK042807(dist=904092),AK038730(dist=1632979)" NA NA intergenic "ENSMUSG00000090316(dist=17035),ENSMUSG00000091838(dist=573005)" NA NA 8qD1 "Score=0.928615;Name=No.91918,chr5:43351884" NA chr8 103161430 GAAxACC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 243 0 3 42.359841 0.268657 0.02 1.188522 49 18 1323 507 60 60 0 0 AA 39.098756 130 0 3594 0 KEEP NA Cdh8 NO B[a]P_3 chr8 10373520 10373520 C A exonic Myo16 nonsynonymous SNV NM_001081397:c.C855A:p.N285K exonic Myo16 nonsynonymous SNV uc012fzh.1:c.C855A:p.N285K exonic ENSMUSG00000039057 nonsynonymous SNV ENSMUST00000042103:c.C855A:p.N285K 8qA1.1 NA NA chr8 10373520 GAAxTGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 83 1 0 7.040152 0.16 0.02 -0.219213 21 4 593 99 60 60 0 0 CC 12.935547 43 0 1232 0 KEEP + Myo16 YES B[a]P_3 chr8 107416045 107416045 C A intergenic "Ces2d-ps(dist=18063),Ces2e(dist=34115)" NA NA intergenic "Ces2(dist=18063),Ces2e(dist=34115)" NA NA intergenic "ENSMUSG00000031884(dist=18078),ENSMUSG00000031886(dist=34115)" NA NA 8qD3 "Score=0.992565;Name=No.104259,chr8:107375962" NA chr8 107416045 GGCxGTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 82 0 0 49.093396 0.772727 0.02 -0.192828 5 17 109 461 60 60 0 0 CC 13.520638 45 0 1170 0 KEEP NA Ces2d-ps YES B[a]P_3 chr8 107862318 107862318 C A exonic Fhod1 nonsynonymous SNV NM_177699:c.G357T:p.R119S exonic Fhod1 nonsynonymous SNV uc009nct.2:c.G357T:p.R119S exonic ENSMUSG00000014778 nonsynonymous SNV ENSMUST00000014922:c.G357T:p.R119S 8qD3 NA NA chr8 107862318 GACxCTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 123 1 0 58.519858 0.638889 0.02 -0.315455 13 23 348 578 60 60 0 0 CC 18.649201 62 0 1734 0 KEEP - Fhod1 YES B[a]P_3 chr8 107914256 107914256 G T exonic Kctd19 nonsynonymous SNV NM_177791:c.C1140A:p.D380E exonic Kctd19 nonsynonymous SNV uc009ncz.1:c.C1071A:p.D357E exonic ENSMUSG00000051648 nonsynonymous SNV ENSMUST00000167294:c.C1071A:p.D357E 8qD3 NA NA chr8 107914256 GATxTCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 66 0 0 28.539248 0.52381 0.02 -0.192785 10 11 263 296 60 60 0 0 GG 9.01399 30 0 817 0 KEEP - Kctd19 YES B[a]P_3 chr8 108361388 108361388 C A exonic Tsnaxip1 nonsynonymous SNV NM_024445:c.C319A:p.L107M exonic Tsnaxip1 nonsynonymous SNV uc009nee.1:c.C319A:p.L107M exonic ENSMUSG00000031893 nonsynonymous SNV ENSMUST00000034365:c.C319A:p.L107M 8qD3 NA NA chr8 108361388 CTCxTGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 103 1 0 77.882828 0.652174 0.02 -0.41203 16 30 445 765 60 60 0 0 CC 13.813519 46 0 1277 0 KEEP + Tsnaxip1 YES B[a]P_3 chr8 109891444 109891444 G T exonic Nfat5 nonsynonymous SNV NM_018823:c.G2416T:p.G806C exonic Nfat5 nonsynonymous SNV uc012gke.1:c.G652T:p.G218C exonic ENSMUSG00000003847 nonsynonymous SNV ENSMUST00000147588:c.G859T:p.G287C 8qD3 NA NA chr8 109891444 GGCxGCA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 157 0 0 27.976573 0.202899 0.02 0.983803 55 14 1427 364 60 60 0 0 GG 21.9362 73 0 1842 0 KEEP + Nfat5 YES B[a]P_3 chr8 109981744 109981744 G T intronic Wwp2 NA NA intronic Wwp2 NA NA intronic ENSMUSG00000031930 NA NA 8qD3 NA NA chr8 109981744 CCCxGCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 79 0 0 51.523249 0.75 0.02 -0.2104 6 18 153 488 60 60 0 0 GG 12.610433 42 0 1036 0 KEEP + Wwp2 YES B[a]P_3 chr8 113018176 113018176 T A intronic Hydin NA NA intronic Hydin NA NA intronic ENSMUSG00000059854 NA NA 8qE1 NA NA chr8 113018176 TTCxCAT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.69362 0.693668 0.999931 65 0 0 16.967428 0.266667 0.02 -0.26277 22 8 578 207 60 60 0 0 TT 7.504713 25 0 688 0 KEEP + Hydin NO B[a]P_3 chr8 116162442 116162442 C G exonic Mon1b nonsynonymous SNV NM_173015:c.C501G:p.H167Q exonic Mon1b nonsynonymous SNV uc009nno.1:c.C501G:p.H167Q exonic ENSMUSG00000078908 nonsynonymous SNV ENSMUST00000035777:c.C501G:p.H167Q 8qE1 NA NA chr8 116162442 TCAxAAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641263 0.641347 0.999869 53 0 0 48.46021 0.607143 0.02 -0.245532 11 17 298 485 60 60 0 0 CC 6.314513 21 0 564 0 KEEP + Mon1b NO B[a]P_3 chr8 116657573 116657573 G T exonic Nudt7 nonsynonymous SNV NM_024437:c.G8T:p.R3L exonic Nudt7 nonsynonymous SNV uc009nnv.2:c.G8T:p.R3L exonic ENSMUSG00000031767 nonsynonymous SNV ENSMUST00000073521:c.G8T:p.R3L 8qE1 NA NA chr8 116657573 CGCxACC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 111 1 0 37.919922 0.470588 0.02 -0.306743 18 16 457 405 60 60 0 0 GG 16.92155 59 1 1557 7 KEEP + Nudt7 YES B[a]P_3 chr8 119976976 119976976 G A intronic Cmip NA NA intronic 4933407C03Rik NA NA intronic ENSMUSG00000034390 NA NA 8qE1 NA NA chr8 119976976 CTGxCAG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 196 0 0 114.541492 0.623188 0.02 0.86875 26 43 712 1139 60 60 0 0 GG 27.609576 92 0 2533 0 KEEP + Cmip NO B[a]P_3 chr8 123642144 123642144 T G UTR3 Foxc2 NA NA UTR3 Foxc2 NA NA UTR3 ENSMUSG00000046714 NA NA 8qE1 NA NA chr8 123642144 AACxTAT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.71725 0.717315 0.999909 65 0 0 20.602741 0.322581 0.02 -0.271727 21 10 564 243 60 60 0 0 TT 7.218769 24 0 667 0 KEEP + Foxc2 NO B[a]P_3 chr8 124309222 124309222 A T exonic Jph3 nonsynonymous SNV NM_020605:c.A2048T:p.E683V exonic Jph3 nonsynonymous SNV uc009nrz.1:c.A2048T:p.E683V exonic ENSMUSG00000025318 nonsynonymous SNV ENSMUST00000026357:c.A2048T:p.E683V 8qE1 NA NA chr8 124309222 CCGxGCC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 262 1 0 62.836249 0.373333 0.02 0.931494 47 28 1210 710 60 60 0 0 AA 43.210928 144 0 3821 0 KEEP + Jph3 NO B[a]P_3 chr8 126057156 126057156 G T exonic Gas8 nonsynonymous SNV NM_018855:c.G1225T:p.V409F exonic Gas8 nonsynonymous SNV uc009nwk.1:c.G1225T:p.V409F exonic ENSMUSG00000040220 nonsynonymous SNV ENSMUST00000093043:c.G1225T:p.V409F 8qE2 NA NA chr8 126057156 GATxTTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 179 1 0 126.52964 0.725806 0.02 1.044962 17 45 473 1209 60 60 0 0 GG 26.168828 87 0 2455 0 KEEP + Gas8 YES B[a]P_3 chr8 126862292 126862292 A T intronic Galnt2 NA NA intronic Galnt2 NA NA intronic "ENSMUSG00000089704,ENSMUSG00000092329" NA NA 8qE2 NA NA chr8 126862292 GAAxGCA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196285 0.196312 0.999863 38 0 0 13.707639 0.428571 0.02 -0.122734 8 6 218 150 60 60 0 0 AA 6.000388 20 0 542 0 KEEP + Galnt2 NO B[a]P_3 chr8 127061643 127061643 G T intronic Cog2 NA NA intronic Cog2 NA NA intronic ENSMUSG00000031979 NA NA 8qE2 NA NA chr8 127061643 GAGxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229148 0.229173 0.999892 44 0 0 29.861941 0.733333 0.02 -0.131501 4 11 111 284 60 60 0 0 GG 6.915712 23 0 621 0 KEEP + Cog2 YES B[a]P_3 chr8 127427316 127427316 C T exonic Sprtn stopgain SNV NM_001111141:c.C1447T:p.R483X exonic Gm505 stopgain SNV uc009nxx.2:c.C1447T:p.R483X exonic ENSMUSG00000031986 stopgain SNV ENSMUST00000034467:c.C1447T:p.R483X 8qE2 NA NA chr8 127427316 GACxGAT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 134 2 0 33.098944 0.3 0.02 -0.437956 35 15 834 392 60 60 0 0 CC 19.828736 66 0 1635 0 KEEP + Sprtn NO B[a]P_3 chr8 127472516 127472516 C A exonic Egln1 nonsynonymous SNV NM_053207:c.G439T:p.G147W exonic Egln1 nonsynonymous SNV uc012gna.1:c.G439T:p.G147W exonic ENSMUSG00000031987 nonsynonymous SNV ENSMUST00000034469:c.G439T:p.G147W 8qE2 NA NA chr8 127472516 CCCxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.228106 0.229173 0.995343 32 0 0 20.918629 0.533333 0.02 -0.131423 7 8 153 216 60 60 0 0 CC 4.204011 14 0 326 0 KEEP - Egln1 YES B[a]P_3 chr8 12822657 12822657 G T exonic Atp11a synonymous SNV NM_015804:c.G615T:p.A205A exonic Atp11a synonymous SNV uc009kwg.1:c.G615T:p.A205A exonic ENSMUSG00000031441 synonymous SNV ENSMUST00000033818:c.G615T:p.A205A 8qA1.1 NA NA chr8 12822657 GGCxGAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999998 101 0 0 46.372178 0.395833 0.02 -0.420758 29 19 748 513 60 60 0 0 GG 10.221386 34 0 897 0 KEEP + Atp11a YES B[a]P_3 chr8 12996776 12996776 C T intronic Mcf2l NA NA intronic Mcf2l NA NA intronic ENSMUSG00000031442 NA NA 8qA1.1 NA NA chr8 12996776 GGCxGGC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.581666 0.58293 0.997832 46 0 0 24.150856 0.384615 0.02 -0.227826 16 10 382 269 60 60 0 0 CC 4.80581 16 0 387 0 KEEP + Mcf2l NO B[a]P_3 chr8 13370649 13370649 A G intronic Tfdp1 NA NA UTR5 Tfdp1 NA NA intronic ENSMUSG00000038482 NA NA 8qA1.1 NA NA chr8 13370649 AGTxAGT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918088 0.918171 0.999909 76 0 0 19.918912 0.209302 0.02 -0.376937 34 9 868 252 60 60 0 0 AA 7.213308 24 0 638 0 KEEP + Tfdp1 NO B[a]P_3 chr8 13551722 13551722 C A UTR3 1700029H14Rik NA NA UTR3 1700029H14Rik NA NA UTR3 ENSMUSG00000031452 NA NA 8qA1.1 NA NA chr8 13551722 GCCxATG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 235 0 0 168.5307 0.560345 0.02 2.177637 51 65 1406 1721 60 60 0 0 CC 26.770109 89 0 2496 0 KEEP - 1700029H14Rik YES B[a]P_3 chr8 19142586 19142586 T A UTR3 Spag11b NA NA UTR3 Spag11b NA NA UTR3 ENSMUSG00000059463 NA NA 8qA1.3 NA NA chr8 19142586 TTAxGAT T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.692164 0.693668 0.997832 51 0 0 45.192934 0.566667 0.02 -0.263001 13 17 330 460 60 60 0 0 TT 4.811685 16 0 430 0 KEEP + Spag11b NO B[a]P_3 chr8 22235644 22235644 G A exonic Gm14851 nonsynonymous SNV NM_001177482:c.C86T:p.T29I exonic Gm14851 nonsynonymous SNV uc012gar.1:c.C86T:p.T29I exonic ENSMUSG00000061958 nonsynonymous SNV ENSMUST00000077452:c.C86T:p.T29I 8qA2 "Score=0.974508;Name=No.103963,chr8:22545821" NA chr8 22235644 TTAxTCT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 389 69 81 58.189065 0.247706 0.02 2.097735 82 27 2300 718 54 37 0 0 GG 61.050546 203 0 5724 0 KEEP - Gm14851 NO B[a]P_3 chr8 24250655 24250655 G T exonic "Ank1,Gm15816" nonsynonymous SNV NM_001282148:c.C304A:p.R102S exonic Ank1 synonymous SNV uc009lel.1:c.G258T:p.T86T exonic ENSMUSG00000031543 synonymous SNV ENSMUST00000033947:c.G258T:p.T86T 8qA2 NA NA chr8 24250655 GACxGAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353898 0.353947 0.999863 47 0 0 17.01134 0.368421 0.02 -0.166511 12 7 295 191 60 60 0 0 GG 6.004003 20 0 492 0 KEEP NA Ank1 YES B[a]P_3 chr8 28455602 28455602 C A exonic Tex24 nonsynonymous SNV NM_001013609:c.C685A:p.L229M exonic Tex24 nonsynonymous SNV uc009lir.1:c.C685A:p.L229M exonic ENSMUSG00000071138 nonsynonymous SNV ENSMUST00000095375:c.C685A:p.L229M 8qA2 "Score=0.960994;Name=No.104048,chr8:31287170" NA chr8 28455602 CAAxTGT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 129 0 1 42.200243 0.289855 0.02 0.895088 49 20 1371 507 60 60 0 0 CC 15.94142 53 0 1483 0 KEEP + Tex24 YES B[a]P_3 chr8 28570223 28570223 C A exonic Poteg nonsynonymous SNV NM_026256:c.C857A:p.P286H exonic Poteg nonsynonymous SNV uc009liw.1:c.C857A:p.P286H exonic ENSMUSG00000063932 nonsynonymous SNV ENSMUST00000081321:c.C857A:p.P286H 8qA2 NA NA chr8 28570223 AGCxCAG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 110 2 0 54.28404 0.468085 0.02 -0.41203 25 22 676 579 60 60 0 0 CC 13.218227 44 0 1200 0 KEEP + Poteg YES B[a]P_3 chr8 32279172 32279172 C A UTR5 Mak16 NA NA UTR5 Mak16 NA NA UTR5 ENSMUSG00000031578 NA NA 8qA3 NA NA chr8 32279172 TCGxCGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 69 2 0 65.976316 0.685714 0.02 -0.306829 11 24 291 640 60 60 0 0 CC 8.121344 27 0 752 0 KEEP - Mak16 YES B[a]P_3 chr8 32279173 32279173 C A UTR5 Mak16 NA NA UTR5 Mak16 NA NA UTR5 ENSMUSG00000031578 NA NA 8qA3 NA NA chr8 32279173 CGCxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 69 2 0 67.204802 0.685714 0.02 -0.306639 11 24 242 652 60 60 0 0 CC 8.110607 27 0 656 0 KEEP - Mak16 YES B[a]P_3 chr8 33078471 33078471 C A intergenic "Nrg1(dist=49796),Gm8179(dist=183896)" NA NA intronic Nrg1 NA NA intronic ENSMUSG00000062991 NA NA 8qA3 NA NA chr8 33078471 CACxTTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 94 0 0 56.604715 0.564103 0.02 -0.341602 17 22 445 577 60 60 0 0 CC 13.235203 44 0 1241 0 KEEP NA Nrg1 YES B[a]P_3 chr8 3429643 3429643 A T intronic Arhgef18 NA NA intronic Arhgef18 NA NA intronic ENSMUSG00000004568 NA NA 8qA1.1 NA NA chr8 3429643 GTAxGGG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 84 0 0 46.521934 0.487179 0.02 -0.341919 20 19 543 492 60 60 0 0 AA 11.430296 38 0 1064 0 KEEP + Arhgef18 NO B[a]P_3 chr8 3744211 3744211 C A exonic Cd209a nonsynonymous SNV NM_133238:c.G590T:p.G197V exonic Cd209a nonsynonymous SNV uc009ksr.2:c.G329T:p.G110V exonic ENSMUSG00000031494 nonsynonymous SNV ENSMUST00000111031:c.G509T:p.G170V 8qA1.1 NA NA chr8 3744211 TCTxCTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.90903 0.909069 0.999957 79 0 0 47.599714 0.487805 0.02 -0.376687 21 20 573 504 60 60 0 0 CC 7.82129 26 0 739 0 KEEP - Cd209a YES B[a]P_3 chr8 42086083 42086083 C A intronic Mtus1 NA NA intronic Mtus1 NA NA intronic ENSMUSG00000045636 NA NA 8qA4 NA NA chr8 42086083 CTGxCTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 116 0 0 68.019597 0.509434 0.02 1.026577 26 27 703 711 60 60 0 0 CC 13.794614 46 0 1225 0 KEEP - Mtus1 YES B[a]P_3 chr8 46125197 46125197 C G exonic Fat1 stopgain SNV NM_001081286:c.C11532G:p.Y3844X exonic Fat1 stopgain SNV uc009lom.1:c.C1455G:p.Y485X exonic ENSMUSG00000070047 stopgain SNV ENSMUST00000093529:c.C11532G:p.Y3844X 8qB1.1 NA NA chr8 46125197 GTAxCGC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 94 0 0 27.007673 0.25 0.02 -0.420792 36 12 962 330 60 60 0 0 CC 11.125176 37 0 991 0 KEEP + Fat1 NO B[a]P_3 chr8 46135154 46135154 A C intronic Fat1 NA NA ncRNA_intronic mfat1 NA NA intronic ENSMUSG00000070047 NA NA 8qB1.1 NA NA chr8 46135154 TTAxTTA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 116 0 0 18.925025 0.195652 0.02 -0.403281 37 9 973 245 60 60 0 0 AA 16.214522 54 0 1457 0 KEEP + Fat1 NO B[a]P_3 chr8 47613898 47613898 C T intronic Acsl1 NA NA intronic Acsl1 NA NA intronic ENSMUSG00000018796 NA NA 8qB1.1 NA NA chr8 47613898 TGGxTGT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 103 0 0 18.120255 0.2 0.02 -0.394557 36 9 980 236 60 60 0 0 CC 12.93292 43 0 1181 0 KEEP + Acsl1 NO B[a]P_3 chr8 49427819 49427819 C A intronic Tenm3 NA NA intronic Odz3 NA NA intronic ENSMUSG00000031561 NA NA 8qB1.2 NA NA chr8 49427819 ACAxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717217 0.717315 0.999863 53 0 0 48.512655 0.6 0.02 -0.271809 12 18 326 487 60 60 0 0 CC 6.005692 20 0 532 0 KEEP - Tenm3 YES B[a]P_3 chr8 50580707 50580707 G T intergenic "Tenm3(dist=820663),Gm2516(dist=872759)" NA NA ncRNA_exonic AK016128 NA NA exonic ENSMUSG00000031559 nonsynonymous SNV ENSMUST00000163925:c.G140T:p.R47L 8qB1.2 NA NA chr8 50580707 ATCxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 70 2 0 42.328237 0.571429 0.02 -0.245371 12 16 295 430 60 60 0 0 GG 9.61192 32 0 776 0 KEEP NA Tenm3 YES B[a]P_3 chr8 58567836 58567836 C A exonic Glra3 stopgain SNV NM_080438:c.C816A:p.Y272X exonic Glra3 stopgain SNV uc009lsn.1:c.C816A:p.Y272X exonic ENSMUSG00000038257 stopgain SNV ENSMUST00000169115:c.C243A:p.Y81X 8qB2 NA NA chr8 58567836 TTAxTTG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 98 0 0 49.31164 0.444444 0.02 -0.394541 25 20 673 532 60 60 0 0 CC 12.632851 42 0 1168 0 KEEP + Glra3 YES B[a]P_3 chr8 63994769 63994769 C A exonic Palld stopgain SNV NM_001081390:c.G3091T:p.G1031X exonic Palld stopgain SNV uc009lud.1:c.G1552T:p.G518X exonic ENSMUSG00000058056 stopgain SNV ENSMUST00000121200:c.G1582T:p.G528X 8qB3.1 NA NA chr8 63994769 ATCxATC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 42 0 0 37.039486 0.8125 0.02 -0.140279 3 13 86 342 60 60 0 0 CC 6.918688 23 0 651 0 KEEP - Palld YES B[a]P_3 chr8 66494838 66494838 C A UTR3 Tll1 NA NA UTR3 Tll1 NA NA UTR3 ENSMUSG00000053626 NA NA 8qB3.1 NA NA chr8 66494838 GGTxGGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 100 2 0 36.900964 0.583333 0.02 -0.21031 10 14 248 373 60 60 0 0 CC 15.628662 52 0 1344 0 KEEP - Tll1 YES B[a]P_3 chr8 66494840 66494840 G C UTR3 Tll1 NA NA UTR3 Tll1 NA NA UTR3 ENSMUSG00000053626 NA NA 8qB3.1 NA NA chr8 66494840 TCGxCAT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 99 2 0 38.20889 0.583333 0.02 -0.210255 10 14 260 386 60 60 0 0 GG 15.641023 52 0 1449 0 KEEP - Tll1 NO B[a]P_3 chr8 67506750 67506750 C A exonic Trim75 nonsynonymous SNV NM_001033429:c.G946T:p.V316L exonic Trim75 nonsynonymous SNV uc009lvd.1:c.G946T:p.V316L exonic ENSMUSG00000071089 nonsynonymous SNV ENSMUST00000095295:c.G946T:p.V316L 8qB3.1 NA NA chr8 67506750 TTAxGCA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 112 0 0 119.989003 0.736842 0.02 1.097833 15 42 349 1142 60 60 0 0 CC 14.425114 48 0 1210 0 KEEP - Trim75 YES B[a]P_3 chr8 70487498 70487498 C G intergenic "Psd3(dist=52653),Sh2d4a(dist=312929)" NA NA exonic Psd3 nonsynonymous SNV uc009lwa.2:c.G787C:p.V263L exonic ENSMUSG00000030465 nonsynonymous SNV ENSMUST00000093469:c.G787C:p.V263L 8qB3.3 NA NA chr8 70487498 CTAxTCC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 190 0 0 59.675744 0.337838 0.02 1.046492 49 25 1350 683 60 60 0 0 CC 25.554445 85 0 2360 0 KEEP NA Psd3 NO B[a]P_3 chr8 72690055 72690055 G T exonic Mef2b synonymous SNV NM_001045484:c.G504T:p.P168P exonic Mef2b synonymous SNV uc009lyz.1:c.G504T:p.P168P exonic "ENSMUSG00000002345,ENSMUSG00000079033" synonymous SNV ENSMUST00000072500:c.G504T:p.P168P 8qB3.3 NA NA chr8 72690055 CCCxCCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 172 0 1 79.115897 0.681818 0.02 0.934225 14 30 351 769 70 60 0 0 GG 27.021808 90 0 2198 0 KEEP + Mef2b YES B[a]P_3 chr8 73312230 73312230 C A exonic Mast3 synonymous SNV NM_199308:c.G573T:p.A191A exonic Mast3 synonymous SNV uc009mbp.2:c.G573T:p.A191A exonic ENSMUSG00000031833 synonymous SNV ENSMUST00000166004:c.G573T:p.A191A 8qB3.3 NA NA chr8 73312230 CTGxGCC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999997 66 0 0 55.854115 0.666667 0.02 -0.262917 10 20 228 546 60 60 0 0 CC 9.54904 32 0 724 0 KEEP - Mast3 YES B[a]P_3 chr8 73388443 73388443 C T intergenic "Kcnn1(dist=7536),Ccdc124(dist=3683)" NA NA intergenic "Kcnn1(dist=1286),Ccdc124(dist=3683)" NA NA UTR3 ENSMUSG00000020887 NA NA 8qB3.3 NA NA chr8 73388443 CACxTCG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 130 1 0 111.125621 0.621212 0.02 0.983573 25 41 695 1106 60 60 0 0 CC 15.328147 51 0 1413 0 KEEP NA Kcnn1 NO B[a]P_3 chr8 73902294 73902294 T A exonic Nr2f6 stopgain SNV NM_010150:c.A370T:p.K124X exonic Nr2f6 stopgain SNV uc009mcx.1:c.A370T:p.K124X exonic ENSMUSG00000002393 stopgain SNV ENSMUST00000002466:c.A370T:p.K124X 8qB3.3 NA NA chr8 73902294 CCTxGCG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 133 2 0 20.834267 0.227273 0.02 -0.385753 34 10 906 263 60 60 0 0 TT 20.059828 67 0 1792 0 KEEP - Nr2f6 NO B[a]P_3 chr8 74188426 74188426 T A intronic Unc13a NA NA intronic Unc13a NA NA intronic ENSMUSG00000034799 NA NA 8qB3.3 NA NA chr8 74188426 AACxCAC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 38 0 0 30.738853 0.666667 0.02 -0.157768 6 12 159 300 60 60 0 0 TT 4.812526 16 0 444 0 KEEP - Unc13a NO B[a]P_3 chr8 78237025 78237025 C A intronic 1700007B14Rik NA NA intronic 1700007B14Rik NA NA ncRNA_exonic ENSMUSG00000082280 NA NA 8qC1 "Score=0.978237;Name=No.102287,chr7:144002499" NA chr8 78237025 TTGxAGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076975 0.077336 0.995343 30 3 3 13.298703 0.555556 0.02 -0.078917 4 5 111 136 60 60 0 0 CC 5.114031 17 0 486 0 KEEP + 1700007B14Rik YES B[a]P_3 chr8 87076900 87076900 C A intronic Cacna1a NA NA intronic Cacna1a NA NA intronic ENSMUSG00000034656 NA NA 8qC3 NA NA chr8 87076900 GTCxCTA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739568 0.739671 0.99986 57 0 0 76.136841 0.84375 0.02 -0.280503 5 27 132 693 60 60 0 0 CC 5.714839 19 0 530 0 KEEP + Cacna1a YES B[a]P_3 chr8 87157191 87157191 C G exonic Cacna1a nonsynonymous SNV NM_001252059:c.C5741G:p.T1914S exonic Cacna1a nonsynonymous SNV uc009mmq.1:c.C566G:p.T189S exonic ENSMUSG00000034656 nonsynonymous SNV ENSMUST00000122053:c.C5741G:p.T1914S 8qC3 NA NA chr8 87157191 CCAxTCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 77 0 0 28.93015 0.363636 0.02 -0.289362 21 12 582 326 60 60 0 0 CC 12.032075 40 0 1128 0 KEEP + Cacna1a NO B[a]P_3 chr8 87517115 87517115 G T exonic Hook2 nonsynonymous SNV NM_001167991:c.G237T:p.L79F exonic Hook2 nonsynonymous SNV uc009moq.2:c.G237T:p.L79F exonic ENSMUSG00000052566 nonsynonymous SNV ENSMUST00000064495:c.G237T:p.L79F 8qC3 NA NA chr8 87517115 CTTxGTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 85 0 0 17.230907 0.258065 0.02 -0.271816 23 8 636 211 60 60 0 0 GG 15.330653 51 0 1418 0 KEEP + Hook2 YES B[a]P_3 chr8 88070620 88070620 C A intronic Dnaja2 NA NA intronic Dnaja2 NA NA intronic ENSMUSG00000031701 NA NA 8qC3 NA NA chr8 88070620 AGTxGTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 77 0 0 43.712758 0.615385 0.02 -0.227866 10 16 231 436 60 60 0 0 CC 11.118124 37 0 944 0 KEEP - Dnaja2 YES B[a]P_3 chr8 88553438 88553438 A T exonic Phkb stopgain SNV NM_199446:c.A2461T:p.R821X exonic Phkb stopgain SNV uc009mqj.1:c.A2461T:p.R821X exonic ENSMUSG00000036879 stopgain SNV ENSMUST00000053771:c.A2461T:p.R821X 8qC3 NA NA chr8 88553438 CCAxGAG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 65 0 0 22.10456 0.322581 0.02 -0.271796 21 10 577 258 60 60 0 0 AA 9.024053 30 0 842 0 KEEP + Phkb NO B[a]P_3 chr8 95855170 95855170 T C splicing Ces1g(NM_021456:exon5:c.403-2A>G) NA NA splicing Ces1g(uc009muq.2:exon5:c.403-2A>G) NA NA splicing ENSMUSG00000057074(ENSMUST00000044602:exon5:c.403-2A>G) NA NA 8qC5 NA NA chr8 95855170 ACCxGGA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 81 0 0 17.793097 0.36 0.02 -0.219077 16 9 427 206 60 60 0 0 TT 13.23413 44 0 1215 0 KEEP - Ces1g NO B[a]P_3 chr8 96508713 96508713 C A intronic Amfr NA NA intronic Amfr NA NA intronic ENSMUSG00000031751 NA NA 8qC5 NA NA chr8 96508713 AAAxACC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 98 0 0 14.45192 0.189189 0.02 -0.333044 30 7 796 189 60 60 0 0 CC 15.035555 50 0 1347 0 KEEP - Amfr YES B[a]P_3 chr8 97000822 97000822 G T exonic Nlrc5 nonsynonymous SNV NM_001033207:c.G1649T:p.W550L exonic Nlrc5 nonsynonymous SNV uc009mwj.2:c.G953T:p.W318L ncRNA_exonic ENSMUSG00000074151 NA NA 8qC5 NA NA chr8 97000822 ACTxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 107 0 0 37.501638 0.314815 0.02 1.026546 37 17 1023 440 60 60 0 0 GG 13.218854 44 0 1214 0 KEEP + Nlrc5 YES B[a]P_3 chr8 97003417 97003417 A G exonic Nlrc5 nonsynonymous SNV NM_001033207:c.A2134G:p.S712G exonic Nlrc5 nonsynonymous SNV uc009mwj.2:c.A1438G:p.S480G ncRNA_exonic ENSMUSG00000074151 NA NA 8qC5 NA NA chr8 97003417 AGGxGTT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 47 0 0 14.107489 0.285714 0.02 -0.184131 15 6 403 167 60 60 0 0 AA 6.891902 23 0 621 0 KEEP + Nlrc5 NO B[a]P_3 chr9 100886299 100886299 A T exonic Pccb stopgain SNV NM_025835:c.T1103A:p.L368X exonic Pccb stopgain SNV uc009rfd.1:c.T992A:p.L331X exonic ENSMUSG00000032527 stopgain SNV ENSMUST00000149322:c.T992A:p.L331X 9qE4 NA NA chr9 100886299 TCCxAGC A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999999 74 1 0 38.721033 0.533333 0.02 -0.262979 14 16 376 401 60 60 0 0 AA 10.52731 35 0 971 0 KEEP - Pccb NO B[a]P_3 chr9 102975474 102975474 G T intronic Slco2a1 NA NA intronic Slco2a1 NA NA intronic ENSMUSG00000032548 NA NA 9qF1 NA NA chr9 102975474 CCCxCAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 174 0 0 66.430481 0.378378 0.02 1.038618 46 28 1101 744 60 60 0 0 GG 23.420279 78 0 1881 0 KEEP + Slco2a1 YES B[a]P_3 chr9 103170035 103170035 G T exonic 1300017J02Rik synonymous SNV NM_027918:c.C1203A:p.A401A exonic 1300017J02Rik synonymous SNV uc009rgk.1:c.C1203A:p.A401A exonic ENSMUSG00000033688 synonymous SNV ENSMUST00000035163:c.C1203A:p.A401A 9qF1 NA NA chr9 103170035 CATxGCG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 67 0 0 15.90205 0.304348 0.02 -0.201668 16 7 438 187 60 60 0 0 GG 10.527937 35 0 983 0 KEEP - 1300017J02Rik YES B[a]P_3 chr9 103258300 103258300 A G UTR3 Cdv3 NA NA UTR3 Cdv3 NA NA UTR3 ENSMUSG00000032803 NA NA 9qF1 "Score=0.986007;Name=No.56528,chr14:43797322" NA chr9 103258300 ATAxGAT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 104 0 0 54.017655 0.47619 0.02 -0.368296 22 20 599 571 60 60 0 0 AA 14.117172 47 0 1294 0 KEEP - Cdv3 NO B[a]P_3 chr9 103350976 103350976 C G exonic Bfsp2 nonsynonymous SNV NM_001002896:c.G797C:p.G266A exonic Bfsp2 nonsynonymous SNV uc009rgu.1:c.G5C:p.G2A exonic ENSMUSG00000032556 nonsynonymous SNV ENSMUST00000124310:c.G797C:p.G266A 9qF1 NA NA chr9 103350976 GTGxCCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 73 0 0 38.332959 0.583333 0.02 -0.209886 10 14 248 387 60 60 0 0 CC 11.429206 38 0 1049 0 KEEP - Bfsp2 NO B[a]P_3 chr9 104001799 104001799 G T exonic Ackr4 nonsynonymous SNV NM_145700:c.C278A:p.T93K exonic Ccrl1 nonsynonymous SNV uc009rhh.2:c.C278A:p.T93K exonic ENSMUSG00000079355 nonsynonymous SNV ENSMUST00000076147:c.C278A:p.T93K 9qF1 NA NA chr9 104001799 AGCxTGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 112 0 0 57.193366 0.52381 0.02 -0.367757 20 22 450 593 60 60 0 0 GG 17.139444 57 0 1522 0 KEEP - Ackr4 YES B[a]P_3 chr9 105677118 105677118 T C exonic Col6a6 nonsynonymous SNV NM_001102607:c.A3023G:p.N1008S exonic Col6a6 nonsynonymous SNV uc009ris.1:c.A3023G:p.N1008S exonic ENSMUSG00000043719 nonsynonymous SNV ENSMUST00000060896:c.A3023G:p.N1008S 9qF1 NA NA chr9 105677118 CTGxTTG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 88 0 0 28.26925 0.292683 0.02 -0.367942 29 12 765 333 60 60 0 0 TT 13.83627 46 0 1280 0 KEEP - Col6a6 NO B[a]P_3 chr9 105833541 105833541 A T exonic Col6a5 synonymous SNV NM_001167923:c.T2637A:p.G879G exonic Gm7455 synonymous SNV uc009riv.2:c.T2634A:p.G878G exonic ENSMUSG00000091345 synonymous SNV ENSMUST00000165165:c.T2634A:p.G878G 9qF1 NA NA chr9 105833541 CCTxCCA A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 60 0 0 26.703898 0.392857 0.02 -0.245355 17 11 412 296 60 60 0 0 AA 8.719241 29 0 762 0 KEEP - Col6a5 NO B[a]P_3 chr9 105848016 105848016 G C exonic Col6a5 nonsynonymous SNV NM_001167923:c.C472G:p.R158G exonic Gm7455 nonsynonymous SNV uc009riv.2:c.C472G:p.R158G exonic ENSMUSG00000091345 nonsynonymous SNV ENSMUST00000165165:c.C472G:p.R158G 9qF1 NA NA chr9 105848016 CCCxCAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423426 0.423478 0.999879 66 0 13 14.574773 0.35 0.02 -0.183039 13 7 323 169 36 29 0 0 GG 8.713554 29 0 725 0 KEEP - Col6a5 NO B[a]P_3 chr9 105969472 105969472 C G exonic Col6a4 nonsynonymous SNV NM_026763:c.G3133C:p.D1045H exonic Col6a4 nonsynonymous SNV uc012gzq.1:c.G3133C:p.D1045H exonic ENSMUSG00000032572 nonsynonymous SNV ENSMUST00000035186:c.G3133C:p.D1045H 9qF1 NA NA chr9 105969472 AGTxTTT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 52 0 0 33.780153 0.52 0.02 -0.219224 12 13 346 351 60 60 0 1 CC 6.913544 23 0 649 0 KEEP - Col6a4 NO B[a]P_3 chr9 106276131 106276131 T G exonic Dusp7 nonsynonymous SNV NM_153459:c.T1123G:p.F375V exonic Dusp7 nonsynonymous SNV uc009rjm.2:c.T1123G:p.F375V exonic ENSMUSG00000053716 nonsynonymous SNV ENSMUST00000066312:c.T961G:p.F321V 9qF1 NA NA chr9 106276131 AACxTCA T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 89 0 0 17.635591 0.227273 0.02 -0.403231 34 10 926 231 60 60 0 0 TT 11.72953 39 0 1080 0 KEEP + Dusp7 NO B[a]P_3 chr9 107558594 107558594 T A exonic Slc38a3 nonsynonymous SNV NM_001199217:c.A695T:p.Y232F exonic Slc38a3 nonsynonymous SNV uc009rmn.1:c.A695T:p.Y232F exonic ENSMUSG00000010064 nonsynonymous SNV ENSMUST00000167868:c.A695T:p.Y232F 9qF1 NA NA chr9 107558594 TTAxAGA T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 129 0 0 73.81142 0.422535 0.02 0.974984 41 30 1022 805 60 60 0 0 TT 14.412814 48 0 1251 0 KEEP - Slc38a3 NO B[a]P_3 chr9 108007948 108007948 G T exonic Bsn synonymous SNV NM_007567:c.C10936A:p.R3646R exonic Bsn synonymous SNV uc009rov.1:c.C10936A:p.R3646R exonic ENSMUSG00000032589 synonymous SNV ENSMUST00000035208:c.C10936A:p.R3646R 9qF2 NA NA chr9 108007948 GCCxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.995686 0.995687 1 140 0 0 105.464122 0.597015 0.02 1.001391 27 40 670 1060 60 60 0 0 GG 15.93068 53 0 1377 0 KEEP - Bsn YES B[a]P_3 chr9 108008945 108008945 G T exonic Bsn nonsynonymous SNV NM_007567:c.C10240A:p.Q3414K exonic Bsn nonsynonymous SNV uc009rov.1:c.C10240A:p.Q3414K exonic ENSMUSG00000032589 nonsynonymous SNV ENSMUST00000035208:c.C10240A:p.Q3414K 9qF2 NA NA chr9 108008945 CCTxGAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 368 4 0 160.133308 0.516393 0.02 2.107471 59 63 1643 1668 60 60 0 0 GG 51.715114 172 0 4859 0 KEEP - Bsn YES B[a]P_3 chr9 108850990 108850990 G A exonic Uqcrc1 nonsynonymous SNV NM_025407:c.G1309A:p.D437N exonic Uqcrc1 nonsynonymous SNV uc009rrg.1:c.G1309A:p.D437N exonic ENSMUSG00000025651 nonsynonymous SNV ENSMUST00000026743:c.G1309A:p.D437N 9qF2 NA NA chr9 108850990 GTGxATG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 112 0 0 65.384448 0.666667 0.02 -0.333179 12 24 342 639 60 60 0 0 GG 16.481672 55 0 1524 0 KEEP + Uqcrc1 NO B[a]P_3 chr9 109396002 109396002 A G splicing Fbxw19(NM_177703:exon5:c.411+2T>C) NA NA splicing Fbxw19(uc009rsk.1:exon5:c.411+2T>C) NA NA splicing ENSMUSG00000074061(ENSMUST00000076617:exon5:c.411+2T>C) NA NA 9qF2 "Score=0.913641;Name=No.105618,chr9:109185534" NA chr9 109396002 CTCxCCT A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 327 2 0 62.212972 0.299065 0.02 2.248303 75 32 1955 753 60 60 0 0 AA 48.664095 165 1 4375 8 KEEP - Fbxw19 NO B[a]P_3 chr9 110752490 110752490 G T intronic Prss46 NA NA intronic Prss46 NA NA intronic ENSMUSG00000049719 NA NA 9qF3 NA NA chr9 110752490 TCTxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 477 0 0 242.33298 0.644928 0.02 1.984713 49 89 1353 2389 60 60 0 0 GG 81.816218 272 0 7761 0 KEEP + Prss46 YES B[a]P_3 chr9 110763907 110763907 G T exonic Prss50 nonsynonymous SNV NM_146227:c.G613T:p.V205L exonic Prss50 nonsynonymous SNV uc009rva.1:c.G613T:p.V205L exonic ENSMUSG00000048752 nonsynonymous SNV ENSMUST00000051097:c.G613T:p.V205L 9qF3 NA NA chr9 110763907 ACCxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 93 0 0 49.780979 0.542857 0.02 -0.315605 16 19 418 512 60 60 0 0 GG 12.530571 44 1 1142 6 KEEP + Prss50 YES B[a]P_3 chr9 118436116 118436116 C T intronic Golga4 NA NA intronic Golga4 NA NA intronic ENSMUSG00000038708 NA NA 9qF3 NA NA chr9 118436116 TGGxTTC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 66 0 0 40.999148 0.615385 0.02 -0.227931 10 16 274 409 60 60 0 0 CC 10.209729 34 0 917 0 KEEP + Golga4 NO B[a]P_3 chr9 119104831 119104831 C T exonic Slc22a13 nonsynonymous SNV NM_133980:c.G697A:p.V233I exonic Slc22a13 nonsynonymous SNV uc009sal.2:c.G697A:p.V233I exonic ENSMUSG00000074028 nonsynonymous SNV ENSMUST00000084797:c.G697A:p.V233I 9qF3 NA NA chr9 119104831 CAAxGTT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 83 0 0 28.256483 0.4 0.02 -0.26294 18 12 453 313 60 60 0 0 CC 11.403972 38 0 947 0 KEEP - Slc22a13 NO B[a]P_3 chr9 119925620 119925620 G A exonic Xirp1 nonsynonymous SNV NM_011724:c.C3314T:p.P1105L exonic Xirp1 nonsynonymous SNV uc009sbw.2:c.C3314T:p.P1105L exonic ENSMUSG00000079243 nonsynonymous SNV ENSMUST00000111635:c.C3314T:p.P1105L 9qF4 NA NA chr9 119925620 GCAxGAG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 106 0 0 41.26071 0.386364 0.02 -0.394586 27 17 753 459 60 60 0 0 GG 14.740373 49 0 1397 0 KEEP - Xirp1 NO B[a]P_3 chr9 121698275 121698275 G T exonic Hhatl nonsynonymous SNV NM_029095:c.C531A:p.H177Q exonic Hhatl nonsynonymous SNV uc009sdw.2:c.C531A:p.H177Q exonic ENSMUSG00000032523 nonsynonymous SNV ENSMUST00000035110:c.C531A:p.H177Q 9qF4 NA NA chr9 121698275 ACCxTGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 34 0 0 28.028841 0.714286 0.02 -0.122751 4 10 108 269 60 60 0 0 GG 5.712365 19 0 498 0 KEEP - Hhatl YES B[a]P_3 chr9 121761674 121761674 G A exonic Higd1a nonsynonymous SNV NM_019814:c.C32T:p.S11L exonic "Gm9790,Higd1a" nonsynonymous SNV uc009seb.2:c.C32T:p.S11L exonic ENSMUSG00000038412 nonsynonymous SNV ENSMUST00000060251:c.C32T:p.S11L 9qF4 NA NA chr9 121761674 TATxAAG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 168 2 0 51.267674 0.366667 0.02 1.071235 38 22 1077 579 60 60 0 0 GG 21.44803 74 1 2138 7 KEEP - Higd1a NO B[a]P_3 chr9 122162128 122162128 A C exonic Ano10 nonsynonymous SNV NM_001271873:c.T1420G:p.S474A exonic Ano10 nonsynonymous SNV uc009seu.1:c.T922G:p.S308A exonic ENSMUSG00000037949 nonsynonymous SNV ENSMUST00000042546:c.T1594G:p.S532A 9qF4 NA NA chr9 122162128 CTGxGTT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 78 2 0 20.695837 0.375 0.02 -0.210406 15 9 408 233 60 60 0 0 AA 12.331563 41 0 1142 0 KEEP - Ano10 NO B[a]P_3 chr9 122162133 122162133 A C exonic Ano10 nonsynonymous SNV NM_001271873:c.T1415G:p.V472G exonic Ano10 nonsynonymous SNV uc009seu.1:c.T917G:p.V306G exonic ENSMUSG00000037949 nonsynonymous SNV ENSMUST00000042546:c.T1589G:p.V530G 9qF4 NA NA chr9 122162133 TTGxCTT A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 78 2 0 16.170342 0.269231 0.02 -0.227625 19 7 480 194 60 60 0 0 AA 12.028357 40 0 1089 0 KEEP - Ano10 NO B[a]P_3 chr9 122973801 122973801 T C intronic Tgm4 NA NA intronic Tgm4 NA NA intronic ENSMUSG00000025787 NA NA 9qF4 NA NA chr9 122973801 GTCxTTT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 124 0 0 47.711799 0.322581 0.02 1.151571 42 20 1155 551 60 60 0 0 TT 13.535679 45 0 1259 0 KEEP + Tgm4 NO B[a]P_3 chr9 123428277 123428277 G C exonic Limd1 nonsynonymous SNV NM_013860:c.G1923C:p.E641D exonic Limd1 nonsynonymous SNV uc009sgf.2:c.G1923C:p.E641D exonic ENSMUSG00000025239 nonsynonymous SNV ENSMUST00000026269:c.G1923C:p.E641D 9qF4 NA NA chr9 123428277 GGAxGAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 108 0 0 85.058611 0.666667 0.02 1.141807 17 34 472 830 60 60 0 0 GG 11.721867 39 0 1080 0 KEEP + Limd1 NO B[a]P_3 chr9 14397206 14397206 G A exonic Amotl1 synonymous SNV NM_001081395:c.C1149T:p.G383G exonic Amotl1 synonymous SNV uc009oep.1:c.C1149T:p.G383G exonic ENSMUSG00000013076 synonymous SNV ENSMUST00000013220:c.C1149T:p.G383G 9qA2 NA NA chr9 14397206 GACxCCA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.999859 51 0 0 17.997004 0.296296 0.02 -0.236485 19 8 438 213 60 60 0 0 GG 5.404802 18 0 437 0 KEEP - Amotl1 NO B[a]P_3 chr9 15749399 15749399 G A exonic Fat3 nonsynonymous SNV NM_001080814:c.C11530T:p.R3844W exonic Fat3 nonsynonymous SNV uc009ogk.1:c.C124T:p.R42W exonic ENSMUSG00000074505 nonsynonymous SNV ENSMUST00000098977:c.C124T:p.R42W 9qA2 NA NA chr9 15749399 GCCxATA G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934491 0.934492 0.999999 92 0 0 46.72447 0.413043 0.02 -0.403145 27 19 679 512 60 60 0 0 GG 10.516814 35 0 895 0 KEEP - Fat3 NO B[a]P_3 chr9 15792904 15792904 C A exonic Fat3 synonymous SNV NM_001080814:c.G9276T:p.P3092P exonic Fat3 synonymous SNV uc009ogj.1:c.G9276T:p.P3092P exonic ENSMUSG00000074505 synonymous SNV ENSMUST00000082170:c.G9276T:p.P3092P 9qA2 NA NA chr9 15792904 TACxGGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717285 0.717315 0.999957 62 0 0 23.715062 0.333333 0.02 -0.270261 20 10 457 272 60 60 0 0 CC 7.764482 26 0 613 0 KEEP - Fat3 YES B[a]P_3 chr9 20629921 20629921 G T exonic Rdh8 nonsynonymous SNV NM_001030290:c.G764T:p.R255L exonic Rdh8 nonsynonymous SNV uc009ojh.1:c.G764T:p.R255L exonic ENSMUSG00000053773 nonsynonymous SNV ENSMUST00000066387:c.G764T:p.R255L 9qA3 NA NA chr9 20629921 TCCxCAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 207 0 0 80.973228 0.407407 0.02 0.88746 48 33 1182 890 60 60 0 0 GG 26.128973 87 0 2168 0 KEEP + Rdh8 YES B[a]P_3 chr9 20807336 20807336 G C UTR5 Mrpl4 NA NA UTR5 Mrpl4 NA NA UTR5 ENSMUSG00000003299 NA NA 9qA3 NA NA chr9 20807336 GCCxCGA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959772 0.959859 0.999909 78 0 0 24.619902 0.22 0.02 -0.437787 39 11 851 308 60 60 0 0 GG 7.207643 24 0 568 0 KEEP + Mrpl4 NO B[a]P_3 chr9 20813120 20813120 G T UTR3 Mrpl4 NA NA UTR3 Mrpl4 NA NA UTR3 ENSMUSG00000003299 NA NA 9qA3 NA NA chr9 20813120 TGGxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 126 0 0 58.691027 0.45283 0.02 1.035332 29 24 791 631 60 60 0 0 GG 16.528017 55 0 1482 0 KEEP + Mrpl4 YES B[a]P_3 chr9 20831822 20831822 C G intronic Icam1 NA NA intronic Icam1 NA NA intronic ENSMUSG00000037405 NA NA 9qA3 NA NA chr9 20831822 TGCxCCA C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 176 0 0 91.714401 0.482759 0.02 0.924099 45 42 1237 979 60 60 0 0 CC 20.079664 67 0 1843 0 KEEP + Icam1 NO B[a]P_3 chr9 21147066 21147066 G T exonic Slc44a2 nonsynonymous SNV NM_001199186:c.G460T:p.G154W exonic Slc44a2 nonsynonymous SNV uc009okz.2:c.G460T:p.G154W exonic ENSMUSG00000057193 nonsynonymous SNV ENSMUST00000034697:c.G466T:p.G156W 9qA3 NA NA chr9 21147066 GATxGGG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 70 0 0 36.742925 0.46875 0.02 -0.280554 17 15 474 392 60 60 0 0 GG 10.227313 34 0 958 0 KEEP + Slc44a2 YES B[a]P_3 chr9 21152749 21152749 G T intronic Slc44a2 NA NA intronic Slc44a2 NA NA intronic ENSMUSG00000057193 NA NA 9qA3 NA NA chr9 21152749 ACCxCTC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693573 0.693668 0.999863 59 0 0 33.242408 0.448276 0.02 -0.262934 16 13 390 357 60 60 0 0 GG 6.008984 20 0 495 0 KEEP + Slc44a2 YES B[a]P_3 chr9 21626003 21626003 C G exonic Dock6 nonsynonymous SNV NM_177030:c.G3329C:p.R1110P exonic Dock6 nonsynonymous SNV uc009omn.1:c.G986C:p.R329P exonic ENSMUSG00000032198 nonsynonymous SNV ENSMUST00000086329:c.G3236C:p.R1079P 9qA3 NA NA chr9 21626003 ATGxGGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934489 0.934492 0.999997 82 1 0 29.708735 0.295455 0.02 -0.403158 31 13 791 351 60 60 0 0 CC 8.712381 29 0 714 0 KEEP - Dock6 NO B[a]P_3 chr9 21808238 21808238 G T splicing Prkcsh(NM_008925:exon3:c.196+1G>T) NA NA splicing "Prkcsh(uc009oni.1:exon3:c.196+1G>T,uc009onj.1:exon3:c.196+1G>T,uc009onk.1:exon3:c.196+1G>T)" NA NA splicing "ENSMUSG00000003402(ENSMUST00000003493:exon3:c.196+1G>T,ENSMUST00000115331:exon3:c.196+1G>T)" NA NA 9qA3 NA NA chr9 21808238 CTGxTGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 190 0 0 103.540828 0.56338 0.02 0.966083 31 40 846 1056 60 60 0 0 GG 25.217448 84 0 2277 0 KEEP + Prkcsh YES B[a]P_3 chr9 22463457 22463457 G T intronic Bbs9 NA NA UTR5 Bbs9 NA NA intronic ENSMUSG00000035919 NA NA 9qA3 NA NA chr9 22463457 TTTxCGA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 96 0 0 81.942218 0.638298 0.02 -0.412115 17 30 475 810 60 60 0 0 GG 12.631451 42 0 1193 0 KEEP + Bbs9 YES B[a]P_3 chr9 34727725 34727725 T A intronic Kirrel3 NA NA intronic Kirrel3 NA NA ncRNA_exonic ENSMUSG00000053889 NA NA 9qA4 NA NA chr9 34727725 TTCxATG T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 116 1 0 48.642358 0.42 0.02 -0.438234 29 21 731 534 60 60 0 0 TT 16.474464 55 0 1447 0 KEEP + Kirrel3 NO B[a]P_3 chr9 34727726 34727726 A T intronic Kirrel3 NA NA intronic Kirrel3 NA NA ncRNA_exonic ENSMUSG00000053889 NA NA 9qA4 NA NA chr9 34727726 TCTxTGG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 115 1 0 47.752717 0.408163 0.02 -0.429462 29 20 716 526 60 60 0 0 AA 16.839559 56 0 1497 0 KEEP + Kirrel3 NO B[a]P_3 chr9 37191432 37191432 T C intronic Hepacam NA NA intronic Hepacam NA NA intronic ENSMUSG00000046240 NA NA 9qA4 NA NA chr9 37191432 CCCxATG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 165 0 0 33.589645 0.223881 0.02 1.107773 52 15 1398 419 60 60 0 0 TT 21.956295 73 0 2015 0 KEEP + Hepacam NO B[a]P_3 chr9 37554081 37554081 C T exonic Olfr874 nonsynonymous SNV NM_146882:c.C361T:p.R121C exonic Olfr874 nonsynonymous SNV uc009ovl.1:c.C361T:p.R121C exonic ENSMUSG00000063350 nonsynonymous SNV ENSMUST00000076719:c.C361T:p.R121C 9qA4 NA NA chr9 37554081 GACxGTT C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 558 3 0 257.809093 0.445887 0.02 4.365029 128 103 3149 2776 60 60 0 0 CC 76.921144 256 0 6491 0 KEEP + Olfr874 NO B[a]P_3 chr9 37855435 37855435 C A exonic Olfr884 synonymous SNV NM_001011798:c.C627A:p.P209P exonic Olfr884 synonymous SNV uc009ovt.1:c.C627A:p.P209P exonic ENSMUSG00000058130 synonymous SNV ENSMUST00000077732:c.C627A:p.P209P 9qA4 "Score=0.923394;Name=No.105370,chr9:37868607" NA chr9 37855435 GCCxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 191 0 0 134.833216 0.541667 0.02 0.75561 44 52 1224 1388 60 60 0 0 CC 23.520979 82 1 2333 10 KEEP + Olfr884 YES B[a]P_3 chr9 38346802 38346802 T G exonic Olfr910 nonsynonymous SNV NM_146811:c.T321G:p.F107L exonic Olfr910 nonsynonymous SNV uc009owr.2:c.T321G:p.F107L exonic ENSMUSG00000057444 nonsynonymous SNV ENSMUST00000073214:c.T321G:p.F107L 9qA5.1 NA NA chr9 38346802 TTTxGTT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 469 5 13 70.652828 0.165854 0.02 4.983505 171 34 4572 944 60 60 0 0 TT 62.843819 209 0 5726 0 KEEP + Olfr910 NO B[a]P_3 chr9 39292767 39292767 G T exonic Olfr44 nonsynonymous SNV NM_146830:c.C70A:p.P24T exonic Olfr44 nonsynonymous SNV uc009oya.1:c.C70A:p.P24T exonic ENSMUSG00000062649 nonsynonymous SNV ENSMUST00000077757:c.C70A:p.P24T 9qA5.1 NA NA chr9 39292767 CTGxCTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 142 0 0 70.809661 0.491228 0.02 1.097908 29 28 773 746 60 60 0 0 GG 21.039651 70 0 1896 0 KEEP - Olfr44 YES B[a]P_3 chr9 39431614 39431614 T C exonic Olfr960 nonsynonymous SNV NM_146279:c.T905C:p.V302A exonic Olfr960 nonsynonymous SNV uc009oyh.1:c.T905C:p.V302A exonic ENSMUSG00000059867 nonsynonymous SNV ENSMUST00000077060:c.T905C:p.V302A 9qA5.1 NA NA chr9 39431614 ATGxATT T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 142 0 0 73.075109 0.509091 0.02 1.204589 27 28 684 763 60 60 0 0 TT 19.841665 66 0 1749 0 KEEP + Olfr960 NO B[a]P_3 chr9 42196222 42196222 C T intronic Tecta NA NA intronic Tecta NA NA intronic ENSMUSG00000037705 NA NA 9qA5.1 NA NA chr9 42196222 CTGxAAG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 54 0 0 29.503847 0.521739 0.02 -0.201646 11 12 307 307 60 60 0 0 CC 6.016016 20 0 565 0 KEEP - Tecta NO B[a]P_3 chr9 42780402 42780402 C A exonic Arhgef12 nonsynonymous SNV NM_027144:c.G3916T:p.A1306S exonic Arhgef12 nonsynonymous SNV uc009pba.1:c.G3916T:p.A1306S exonic ENSMUSG00000059495 nonsynonymous SNV ENSMUST00000072767:c.G3913T:p.A1305S 9qA5.1 NA NA chr9 42780402 AAGxCTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 117 0 0 90.561056 0.603448 0.02 0.991517 23 35 629 908 60 60 0 0 CC 14.437485 48 0 1333 0 KEEP - Arhgef12 YES B[a]P_3 chr9 43884282 43884282 A T exonic Usp2 nonsynonymous SNV NM_016808:c.A793T:p.S265C exonic Usp2 nonsynonymous SNV uc009pbn.1:c.A793T:p.S265C exonic ENSMUSG00000032010 nonsynonymous SNV ENSMUST00000034508:c.A793T:p.S265C 9qA5.1 NA NA chr9 43884282 TCCxGTT A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986152 0.986153 0.999998 107 0 0 68.175457 0.465517 0.02 1.080048 31 27 841 727 60 60 0 0 AA 10.226818 34 0 947 0 KEEP + Usp2 NO B[a]P_3 chr9 43884288 43884288 C T exonic Usp2 nonsynonymous SNV NM_016808:c.C799T:p.P267S exonic Usp2 nonsynonymous SNV uc009pbn.1:c.C799T:p.P267S exonic ENSMUSG00000032010 nonsynonymous SNV ENSMUST00000034508:c.C799T:p.P267S 9qA5.1 NA NA chr9 43884288 TCTxCAG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976863 0.976865 0.999997 97 0 0 63.229583 0.462963 0.02 1.115198 29 25 807 675 60 60 0 0 CC 9.323876 31 0 870 0 KEEP + Usp2 NO B[a]P_3 chr9 44057974 44057974 A G exonic Pdzd3 nonsynonymous SNV NM_133226:c.T472C:p.C158R exonic Pdzd3 nonsynonymous SNV uc009pch.1:c.T472C:p.C158R exonic ENSMUSG00000032105 nonsynonymous SNV ENSMUST00000034618:c.T472C:p.C158R 9qA5.2 NA NA chr9 44057974 GGCxCAA A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.487793 0.490544 0.994391 37 0 0 18.303495 0.391304 0.02 -0.20147 14 9 352 207 60 60 0 0 AA 3.607133 12 0 310 0 KEEP - Pdzd3 NO B[a]P_3 chr9 44083459 44083459 C T exonic Abcg4 synonymous SNV NM_138955:c.G1470A:p.V490V exonic Abcg4 synonymous SNV uc009pcn.1:c.G282A:p.V94V exonic ENSMUSG00000032131 synonymous SNV ENSMUST00000034648:c.G1470A:p.V490V 9qA5.2 NA NA chr9 44083459 GTAxACG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818365 0.818465 0.999879 70 1 0 41.955899 0.5 0.02 -0.315147 18 18 454 442 60 60 0 0 CC 6.593496 22 0 573 0 KEEP - Abcg4 NO B[a]P_3 chr9 44592427 44592427 G A exonic Ift46 nonsynonymous SNV NM_023831:c.G358A:p.D120N exonic Ift46 nonsynonymous SNV uc009pel.1:c.G358A:p.D120N exonic ENSMUSG00000002031 nonsynonymous SNV ENSMUST00000118186:c.G358A:p.D120N 9qA5.2 NA NA chr9 44592427 CCCxATG G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 82 0 0 33.426437 0.378378 0.02 -0.324188 23 14 567 374 60 60 0 0 GG 10.516272 35 0 887 0 KEEP + Ift46 NO B[a]P_3 chr9 45064219 45064219 G T exonic Il10ra synonymous SNV NM_008348:c.C1122A:p.P374P exonic Il10ra synonymous SNV uc009pfp.1:c.C1020A:p.P340P exonic ENSMUSG00000032089 synonymous SNV ENSMUST00000169244:c.C1020A:p.P340P 9qA5.2 NA NA chr9 45064219 GCCxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 141 0 0 95.059405 0.536232 0.02 0.992624 32 37 788 981 60 60 0 0 GG 16.813553 56 0 1376 0 KEEP - Il10ra YES B[a]P_3 chr9 45478119 45478119 G T exonic Dscaml1 synonymous SNV NM_001081270:c.G1152T:p.T384T exonic Dscaml1 synonymous SNV uc009pfz.1:c.G1152T:p.T384T exonic ENSMUSG00000032087 synonymous SNV ENSMUST00000034592:c.G1152T:p.T384T 9qA5.2 NA NA chr9 45478119 GACxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 168 0 0 80.610572 0.52459 0.02 1.054399 29 32 692 837 60 60 0 0 GG 22.512179 75 0 1974 0 KEEP + Dscaml1 YES B[a]P_3 chr9 45561213 45561213 C T exonic Dscaml1 nonsynonymous SNV NM_001081270:c.C6302T:p.A2101V exonic Dscaml1 nonsynonymous SNV uc009pga.1:c.C4598T:p.A1533V exonic ENSMUSG00000032087 nonsynonymous SNV ENSMUST00000034592:c.C6302T:p.A2101V 9qA5.2 NA NA chr9 45561213 GGGxTGG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.351495 0.353947 0.993072 37 0 0 24.656018 0.526316 0.02 -0.166562 9 10 248 256 60 60 0 0 CC 3.007944 10 0 280 0 KEEP + Dscaml1 NO B[a]P_3 chr9 45718429 45718429 G A intronic Pcsk7 NA NA intronic Pcsk7 NA NA intronic ENSMUSG00000035382 NA NA 9qA5.2 NA NA chr9 45718429 GCTxTAT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.99986 50 2 0 24.649908 0.423077 0.02 -0.227916 15 11 408 271 60 60 0 0 GG 5.715701 19 0 544 0 KEEP + Pcsk7 NO B[a]P_3 chr9 48841733 48841733 C T intronic Usp28 NA NA exonic Usp28 nonsynonymous SNV uc009pit.1:c.C1372T:p.R458C exonic ENSMUSG00000032267 nonsynonymous SNV ENSMUST00000034805:c.C1552T:p.R518C 9qA5.3 NA NA chr9 48841733 GCAxGCC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 167 1 0 86.530575 0.423529 0.02 0.746531 49 36 1152 945 60 60 0 0 CC 15.016317 50 0 1204 0 KEEP + Usp28 NO B[a]P_3 chr9 48847215 48847215 G T exonic Usp28 nonsynonymous SNV NM_175482:c.G2913T:p.K971N exonic Usp28 nonsynonymous SNV uc009pit.1:c.G1803T:p.K601N exonic ENSMUSG00000032267 nonsynonymous SNV ENSMUST00000034805:c.G1983T:p.K661N 9qA5.3 NA NA chr9 48847215 CAAxGAC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.456764 0.457757 0.997832 44 0 0 36.807238 0.636364 0.02 -0.192883 8 14 226 364 60 60 0 0 GG 3.25939 15 1 423 11 KEEP + Usp28 YES B[a]P_3 chr9 51432572 51432572 G C intergenic "1810046K07Rik(dist=295550),Arhgap20(dist=140885)" NA NA intergenic "1810046K07Rik(dist=295550),Arhgap20(dist=140885)" NA NA UTR3 ENSMUSG00000078308 NA NA 9qA5.3 NA NA chr9 51432572 CCTxAGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 696 1 239 28.932299 0.087629 0.02 4.707361 177 17 4934 458 60 57 0 0 GG 90.543754 301 0 8677 0 KEEP NA 1810046K07Rik NO B[a]P_3 chr9 51432704 51432704 G C intergenic "1810046K07Rik(dist=295682),Arhgap20(dist=140753)" NA NA intergenic "1810046K07Rik(dist=295682),Arhgap20(dist=140753)" NA NA UTR3 ENSMUSG00000078308 NA NA 9qA5.3 NA NA chr9 51432704 CCTxAGT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 688 3 160 21.174194 0.05303 0.02 5.662981 250 14 6986 382 60 55 0 0 GG 100.777575 335 0 9615 0 KEEP NA 1810046K07Rik NO B[a]P_3 chr9 54034579 54034579 C G exonic Cyp19a1 nonsynonymous SNV NM_007810:c.G205C:p.G69R exonic Cyp19a1 nonsynonymous SNV uc009pmu.1:c.G205C:p.G69R exonic ENSMUSG00000032274 nonsynonymous SNV ENSMUST00000034811:c.G205C:p.G69R 9qA5.3 NA NA chr9 54034579 TCCxCAT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 144 0 0 75.30206 0.450704 0.02 1.073079 39 32 1083 813 60 60 0 0 CC 15.339549 51 0 1418 0 KEEP - Cyp19a1 NO B[a]P_3 chr9 54168294 54168294 A G intronic Gldn NA NA intronic Gldn NA NA intronic ENSMUSG00000046167 NA NA 9qA5.3 NA NA chr9 54168294 GGAxGGC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 83 0 0 27.230438 0.272727 0.02 -0.38582 32 12 885 327 60 60 0 0 AA 8.422579 28 0 789 0 KEEP + Gldn NO B[a]P_3 chr9 54308791 54308791 G C exonic Dmxl2 nonsynonymous SNV NM_172771:c.C701G:p.A234G exonic Dmxl2 nonsynonymous SNV uc009pra.2:c.C701G:p.A234G exonic ENSMUSG00000041268 nonsynonymous SNV ENSMUST00000127880:c.C179G:p.A60G 9qA5.3 NA NA chr9 54308791 ACGxCTC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 124 0 0 61.658491 0.461538 0.02 1.222279 28 24 771 658 60 60 0 0 GG 14.375942 48 0 1316 0 KEEP - Dmxl2 NO B[a]P_3 chr9 55071392 55071392 G T exonic Fbxo22 nonsynonymous SNV NM_028049:c.G1137T:p.E379D exonic Fbxo22 nonsynonymous SNV uc009pse.1:c.G828T:p.E276D exonic ENSMUSG00000032309 nonsynonymous SNV ENSMUST00000146201:c.G828T:p.E276D 9qB NA NA chr9 55071392 TGAxGTA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 136 1 0 34.547388 0.280702 0.02 1.000584 41 16 1094 416 60 60 0 0 GG 20.140867 67 0 1873 0 KEEP + Fbxo22 YES B[a]P_3 chr9 55392915 55392915 G T exonic Isl2 synonymous SNV NM_027397:c.G963T:p.L321L exonic Isl2 synonymous SNV uc009psm.1:c.G963T:p.L321L exonic ENSMUSG00000032318 synonymous SNV ENSMUST00000034869:c.G963T:p.L321L 9qB NA NA chr9 55392915 GCTxGTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 72 0 0 41.490697 0.472222 0.02 -0.315631 19 17 522 442 60 60 0 0 GG 8.12127 27 0 760 0 KEEP + Isl2 YES B[a]P_3 chr9 56696898 56696898 G C exonic Odf3l1 nonsynonymous SNV NM_198673:c.C547G:p.L183V exonic Odf3l1 nonsynonymous SNV uc009ptj.1:c.C547G:p.L183V exonic ENSMUSG00000045620 nonsynonymous SNV ENSMUST00000055036:c.C547G:p.L183V 9qB NA NA chr9 56696898 CCAxACT G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 164 0 0 47.84556 0.291667 0.02 0.966004 51 21 1432 567 60 60 0 0 GG 21.96074 73 0 2097 0 KEEP - Odf3l1 NO B[a]P_3 chr9 57352926 57352926 G T UTR3 Rpp25 NA NA UTR3 Rpp25 NA NA UTR3 ENSMUSG00000062309 NA NA 9qB NA NA chr9 57352926 GGTxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.909069 0.909069 1 104 0 0 54.933342 0.511628 0.02 -0.376636 21 22 567 574 60 60 0 0 GG 14.732502 49 0 1374 0 KEEP + Rpp25 YES B[a]P_3 chr9 59411122 59411122 G T splicing Hexa(NM_010421:exon12:c.1418+1G>T) NA NA splicing Hexa(uc009pxw.1:exon12:c.1418+1G>T) NA NA splicing "ENSMUSG00000025232(ENSMUST00000026262:exon12:c.1418+1G>T,ENSMUST00000169932:exon13:c.1403+1G>T)" NA NA 9qB NA NA chr9 59411122 CTGxTAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58285 0.58293 0.999863 53 0 0 29.127321 0.461538 0.02 -0.227948 14 12 379 312 60 60 0 0 GG 6.015008 20 0 544 0 KEEP + Hexa YES B[a]P_3 chr9 61803927 61803927 G T exonic Paqr5 nonsynonymous SNV NM_028748:c.C919A:p.L307I exonic Paqr5 nonsynonymous SNV uc009qab.1:c.C271A:p.L91I exonic ENSMUSG00000032278 nonsynonymous SNV ENSMUST00000113990:c.C877A:p.L293I 9qB NA NA chr9 61803927 TGAxGCT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 67 0 0 25.350222 0.423077 0.02 -0.227948 15 11 419 278 60 60 0 0 GG 11.130489 37 0 1056 0 KEEP - Paqr5 YES B[a]P_3 chr9 61824198 61824198 G T intronic Paqr5 NA NA intronic Paqr5 NA NA intronic ENSMUSG00000032278 NA NA 9qB NA NA chr9 61824198 AAGxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 90 0 0 51.670604 0.512195 0.02 -0.368223 20 21 553 540 60 60 0 0 GG 11.122821 37 0 1016 0 KEEP - Paqr5 YES B[a]P_3 chr9 64083484 64083484 A G exonic Uchl4 nonsynonymous SNV NM_033607:c.A439G:p.I147V exonic Uchl4 nonsynonymous SNV uc009qbq.1:c.A439G:p.I147V exonic ENSMUSG00000035337 nonsynonymous SNV ENSMUST00000039011:c.A439G:p.I147V 9qC NA NA chr9 64083484 GCTxTTC A G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 272 0 0 85.830799 0.267606 0.02 2.244482 104 38 2561 1035 60 60 0 0 AA 35.160897 121 1 3177 10 KEEP + Uchl4 NO B[a]P_3 chr9 64141857 64141857 G T exonic Tipin nonsynonymous SNV NM_025372:c.G320T:p.W107L exonic Tipin nonsynonymous SNV uc009qbr.1:c.G320T:p.W107L exonic ENSMUSG00000032397 nonsynonymous SNV ENSMUST00000034964:c.G320T:p.W107L 9qC NA NA chr9 64141857 ACTxGGC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 89 0 0 38.627382 0.483871 0.02 -0.271828 16 15 447 408 60 60 0 0 GG 14.137883 47 0 1335 0 KEEP + Tipin YES B[a]P_3 chr9 65028006 65028006 G T exonic Igdcc3 nonsynonymous SNV NM_008988:c.G1018T:p.A340S exonic Igdcc3 nonsynonymous SNV uc009qcv.1:c.G1018T:p.A340S exonic ENSMUSG00000032394 nonsynonymous SNV ENSMUST00000034961:c.G1018T:p.A340S 9qC NA NA chr9 65028006 CAAxGTA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.519232 0.522161 0.994391 47 0 0 26.955667 0.458333 0.02 -0.21043 13 11 360 289 60 60 0 0 GG 3.910351 13 0 364 0 KEEP + Igdcc3 YES B[a]P_3 chr9 65219843 65219843 G C exonic Gm514 nonsynonymous SNV NM_001111145:c.G616C:p.A206P exonic Gm514 nonsynonymous SNV uc012gvj.1:c.G616C:p.A206P exonic ENSMUSG00000086228 nonsynonymous SNV ENSMUST00000147185:c.G616C:p.A206P 9qC NA NA chr9 65219843 CCAxCAC G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457694 0.457757 0.999863 53 0 0 35.133014 0.590909 0.02 -0.192913 9 13 256 354 60 60 0 0 GG 6.015897 20 0 560 0 KEEP + Gm514 NO B[a]P_3 chr9 65436030 65436030 G T exonic Pif1 synonymous SNV NM_172453:c.G414T:p.A138A exonic Pif1 synonymous SNV uc009qdq.1:c.G414T:p.A138A exonic ENSMUSG00000041064 synonymous SNV ENSMUST00000047099:c.G414T:p.A138A 9qC NA NA chr9 65436030 GGCxGTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.351306 0.353947 0.99254 30 0 0 33.347322 0.666667 0.02 -0.166568 6 12 154 326 60 60 0 0 GG 2.702585 9 0 213 0 KEEP + Pif1 YES B[a]P_3 chr9 66103176 66103176 G T exonic Dapk2 nonsynonymous SNV NM_010019:c.G851T:p.W284L exonic Dapk2 nonsynonymous SNV uc009qen.2:c.G851T:p.W284L exonic ENSMUSG00000032380 nonsynonymous SNV ENSMUST00000034944:c.G851T:p.W284L 9qC NA NA chr9 66103176 CCTxGAT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 127 0 0 66.505745 0.595238 0.02 -0.377018 17 25 474 669 60 60 0 0 GG 17.727458 59 0 1633 0 KEEP + Dapk2 YES B[a]P_3 chr9 69327510 69327510 C A exonic Anxa2 nonsynonymous SNV NM_007585:c.C269A:p.A90D exonic Anxa2 nonsynonymous SNV uc009qng.1:c.C269A:p.A90D exonic ENSMUSG00000032231 nonsynonymous SNV ENSMUST00000034756:c.C269A:p.A90D 9qC NA NA chr9 69327510 CAGxCTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 128 2 0 20.211384 0.212766 0.02 -0.420859 37 10 1012 260 60 60 0 0 CC 18.643435 62 0 1694 0 KEEP + Anxa2 YES B[a]P_3 chr9 70700868 70700868 C T intronic Lipc NA NA intronic Lipc NA NA exonic ENSMUSG00000078305 synonymous SNV ENSMUST00000105101:c.C486T:p.S162S 9qD "Score=0.982468;Name=No.60831,chr15:82946275" NA chr9 70700868 CTCxGTG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 125 0 0 69.227455 0.509434 0.02 1.132768 26 27 665 723 60 60 0 0 CC 16.830091 56 0 1441 0 KEEP - Lipc NO B[a]P_3 chr9 70701627 70701627 G T intronic Lipc NA NA intronic Lipc NA NA UTR3 ENSMUSG00000078305 NA NA 9qD "Score=0.982468;Name=No.60831,chr15:82946275" NA chr9 70701627 GAAxGAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099086 0.099721 0.993634 27 0 1 11.871692 0.5 0.02 -0.08767 5 5 142 125 60 60 0 0 GG 3.609997 12 0 345 0 KEEP - Lipc YES B[a]P_3 chr9 71100815 71100815 G T exonic Aldh1a2 synonymous SNV NM_009022:c.G315T:p.L105L exonic Aldh1a2 synonymous SNV uc009qox.2:c.G315T:p.L105L exonic ENSMUSG00000013584 synonymous SNV ENSMUST00000034723:c.G315T:p.L105L 9qD NA NA chr9 71100815 TCTxTTG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.382702 0.387407 0.987855 54 0 0 22.213619 0.45 0.02 -0.175357 11 9 305 239 60 60 0 0 GG 6.919009 23 0 658 0 KEEP + Aldh1a2 YES B[a]P_3 chr9 71504031 71504031 T G exonic Cgnl1 nonsynonymous SNV NM_026599:c.A2420C:p.N807T exonic Cgnl1 nonsynonymous SNV uc012gwn.1:c.A2207C:p.N736T exonic ENSMUSG00000032232 nonsynonymous SNV ENSMUST00000121322:c.A2207C:p.N736T 9qD NA NA chr9 71504031 GAGxTGC T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 161 3 0 53.454956 0.343284 0.02 1.009987 44 23 1173 612 60 60 0 0 TT 21.351381 71 0 1933 0 KEEP - Cgnl1 NO B[a]P_3 chr9 74058350 74058350 G T exonic Wdr72 nonsynonymous SNV NM_001033500:c.G2572T:p.G858W exonic Wdr72 nonsynonymous SNV uc009qre.1:c.G2572T:p.G858W exonic ENSMUSG00000044976 nonsynonymous SNV ENSMUST00000055879:c.G2572T:p.G858W 9qD NA NA chr9 74058350 CCTxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 74 0 0 27.530026 0.478261 0.02 -0.201662 12 11 330 292 60 60 0 0 GG 13.207521 44 0 1217 0 KEEP + Wdr72 YES B[a]P_3 chr9 75014890 75014890 T C exonic Myo5a nonsynonymous SNV NM_010864:c.T2273C:p.L758P exonic Myo5a nonsynonymous SNV uc009qrr.1:c.T2273C:p.L758P exonic ENSMUSG00000034593 nonsynonymous SNV ENSMUST00000123128:c.T2273C:p.L758P 9qD NA NA chr9 75014890 ATCxTGA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 68 0 0 53.631254 0.703704 0.02 -0.236743 8 19 218 517 60 60 0 0 TT 11.427512 38 0 1048 0 KEEP + Myo5a NO B[a]P_3 chr9 75721215 75721215 C T exonic Bmp5 nonsynonymous SNV NM_007555:c.C986T:p.S329F exonic Bmp5 nonsynonymous SNV uc009qsu.1:c.C986T:p.S329F exonic ENSMUSG00000032179 nonsynonymous SNV ENSMUST00000012281:c.C986T:p.S329F 9qD NA NA chr9 75721215 AATxCAA C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 65 0 0 13.333355 0.26087 0.02 -0.201526 17 6 456 162 60 60 0 0 CC 8.723653 29 0 824 0 KEEP + Bmp5 NO B[a]P_3 chr9 77624050 77624050 C G exonic Gclc synonymous SNV NM_010295:c.C381G:p.R127R exonic Gclc synonymous SNV uc009qtm.1:c.C381G:p.R127R exonic ENSMUSG00000032350 synonymous SNV ENSMUST00000034905:c.C381G:p.R127R 9qE1 NA NA chr9 77624050 ACGxCGG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 62 0 0 22.864296 0.428571 0.02 -0.184142 12 9 331 248 60 60 0 0 CC 9.624668 32 0 884 0 KEEP + Gclc NO B[a]P_3 chr9 77624052 77624052 G T exonic Gclc nonsynonymous SNV NM_010295:c.G383T:p.R128L exonic Gclc nonsynonymous SNV uc009qtm.1:c.G383T:p.R128L exonic ENSMUSG00000032350 nonsynonymous SNV ENSMUST00000034905:c.G383T:p.R128L 9qE1 NA NA chr9 77624052 GCCxGAA G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 62 0 0 22.167698 0.428571 0.02 -0.184021 12 9 292 241 60 60 0 0 GG 9.318755 31 0 813 0 KEEP + Gclc YES B[a]P_3 chr9 77943631 77943631 C G intronic Fbxo9 NA NA exonic Fbxo9 nonsynonymous SNV uc009qtr.1:c.G578C:p.R193P exonic ENSMUSG00000001366 synonymous SNV ENSMUST00000159099:c.G579C:p.S193S 9qE1 NA NA chr9 77943631 CCCxGAG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.386567 0.387407 0.997832 44 0 0 27.258906 0.6 0.02 -0.175217 8 12 216 274 60 60 0 0 CC 4.810592 16 0 428 0 KEEP - Fbxo9 NO B[a]P_3 chr9 7936593 7936593 T A exonic Yap1 nonsynonymous SNV NM_009534:c.A1105T:p.S369C exonic Yap1 nonsynonymous SNV uc009ode.2:c.A1105T:p.S369C exonic ENSMUSG00000053110 nonsynonymous SNV ENSMUST00000086580:c.A1105T:p.S369C 9qA1 NA NA chr9 7936593 CGCxGTC T A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 103 0 0 65.112877 0.531915 0.02 -0.420852 22 25 591 673 60 60 0 0 TT 12.588651 42 0 1096 0 KEEP - Yap1 NO B[a]P_3 chr9 79665826 79665826 G T exonic Filip1 nonsynonymous SNV NM_001081243:c.C3317A:p.T1106K exonic Filip1 nonsynonymous SNV uc009quy.1:c.C3317A:p.T1106K exonic ENSMUSG00000034898 nonsynonymous SNV ENSMUST00000093811:c.C3317A:p.T1106K 9qE1 NA NA chr9 79665826 CCCxTAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 331 1 0 106.962187 0.376068 0.02 2.169368 73 44 1780 1196 60 60 0 0 GG 48.369283 161 0 3992 0 KEEP - Filip1 YES B[a]P_3 chr9 80155462 80155462 G A intronic Myo6 NA NA intronic Myo6 NA NA intronic ENSMUSG00000033577 NA NA 9qE1 NA NA chr9 80155462 GTGxTGT G A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 124 0 0 57.054596 0.469388 0.02 -0.429628 26 23 718 608 60 60 0 0 GG 15.890408 53 0 1449 0 KEEP + Myo6 NO B[a]P_3 chr9 81571312 81571312 G T intergenic "D430036J16Rik(dist=32549),Mei4(dist=186039)" NA NA intergenic "AK052495(dist=32549),Mei4(dist=186039)" NA NA ncRNA_exonic ENSMUSG00000079225 NA NA 9qE1 "Score=0.971078;Name=No.74959,chr1_random:168279,No.105685,chrUn_random:279148" NA chr9 81571312 CCCxGCC G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 92 0 10 18.826806 0.32 0.02 -0.218521 17 8 366 218 60 54 0 0 GG 16.170062 54 0 1273 0 KEEP NA D430036J16Rik YES B[a]P_3 chr9 88357831 88357831 C A exonic Syncrip nonsynonymous SNV NM_001284328:c.G970T:p.D324Y exonic Syncrip nonsynonymous SNV uc009qyp.1:c.G676T:p.D226Y exonic ENSMUSG00000032423 nonsynonymous SNV ENSMUST00000174391:c.G676T:p.D226Y 9qE3.1 NA NA chr9 88357831 GATxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 197 2 0 113.431491 0.5625 0.02 0.895974 35 45 980 1158 60 60 0 0 CC 28.569904 95 0 2699 0 KEEP - Syncrip YES B[a]P_3 chr9 98477943 98477943 G T exonic Copb2 nonsynonymous SNV NM_015827:c.G1091T:p.G364V exonic Copb2 nonsynonymous SNV uc009rdm.1:c.G1091T:p.G364V exonic ENSMUSG00000032458 nonsynonymous SNV ENSMUST00000035033:c.G1091T:p.G364V 9qE3.3 NA NA chr9 98477943 ATGxGAG G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.99986 42 2 0 30.937547 0.705882 0.02 -0.148938 5 12 131 297 60 60 0 0 GG 5.715342 19 0 536 0 KEEP + Copb2 YES B[a]P_3 chr9 99476416 99476416 G C exonic Dbr1 synonymous SNV NM_031403:c.G69C:p.A23A exonic Dbr1 synonymous SNV uc009rei.1:c.G69C:p.A23A exonic ENSMUSG00000032469 synonymous SNV ENSMUST00000066650:c.G69C:p.A23A 9qE3.3 NA NA chr9 99476416 GGCxGAG G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877697 0.877708 0.999988 83 0 0 32.458558 0.375 0.02 -0.35053 25 15 647 368 60 60 0 0 GG 8.114672 27 0 716 0 KEEP + Dbr1 NO B[a]P_3 chrX 100819066 100819066 C T ncRNA_exonic Ftx NA NA ncRNA_exonic B230206F22Rik NA NA ncRNA_exonic ENSMUSG00000086370 NA NA XqD NA NA chrX 100819066 CAGxCTC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 99 1 0 68.044929 0.958333 0.02 -0.21036 1 23 27 589 37 60 0 0 CC 17.142507 57 0 1554 0 KEEP - Ftx NO B[a]P_3 chrX 101158987 101158987 C A exonic Rlim stopgain SNV NM_011276:c.G646T:p.E216X exonic Rlim stopgain SNV uc009tzz.1:c.G646T:p.E216X exonic ENSMUSG00000056537 stopgain SNV ENSMUST00000070705:c.G646T:p.E216X XqD NA NA chrX 101158987 GCTxTGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 178 0 0 168.9993 1 0.02 0.99234 0 58 0 1415 0 60 0 0 CC 30.067597 100 0 2816 0 KEEP - Rlim YES B[a]P_3 chrX 103123818 103123818 C G intronic Atrx NA NA intronic Atrx NA NA intronic ENSMUSG00000031229 NA NA XqD NA NA chrX 103123818 CGGxCCT C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.023939 0.024074 0.994391 25 0 0 8.442369 0.8 0.02 -0.043231 1 4 28 77 60 60 0 0 CC 3.910272 13 0 362 0 KEEP - Atrx NO B[a]P_3 chrX 130220550 130220550 C A exonic Pcdh19 nonsynonymous SNV NM_001105245:c.G1254T:p.Q418H exonic Pcdh19 nonsynonymous SNV uc009uew.2:c.G1254T:p.Q418H exonic ENSMUSG00000051323 nonsynonymous SNV ENSMUST00000149154:c.G1254T:p.Q418H XqE3 NA NA chrX 130220550 GTAxTGG C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 130 0 0 58.444025 1 0.02 -0.16656 0 19 0 494 0 60 0 0 CC 28.528748 95 0 2588 0 KEEP - Pcdh19 YES B[a]P_3 chrX 130798301 130798301 C A exonic Trmt2b nonsynonymous SNV NM_172540:c.G370T:p.G124W exonic Trmt2b nonsynonymous SNV uc009ufq.2:c.G370T:p.G124W exonic ENSMUSG00000067369 nonsynonymous SNV ENSMUST00000087541:c.G370T:p.G124W XqE3 NA NA chrX 130798301 GCCxCTC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053742 0.054137 0.992708 20 0 0 20.025483 0.875 0.02 -0.070128 1 7 26 180 60 60 0 0 CC 3.004907 10 0 263 0 KEEP - Trmt2b YES B[a]P_3 chrX 139745673 139745673 C A exonic Chrdl1 nonsynonymous SNV NM_001114385:c.G543T:p.W181C exonic Chrdl1 nonsynonymous SNV uc009ume.2:c.G543T:p.W181C exonic ENSMUSG00000031283 nonsynonymous SNV ENSMUST00000063029:c.G543T:p.W181C XqF2 NA NA chrX 139745673 TTCxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 102 0 0 51.388666 1 0.02 -0.149004 0 17 0 433 0 60 0 0 CC 19.852087 66 0 1847 0 KEEP - Chrdl1 YES B[a]P_3 chrX 140958068 140958068 T C exonic Trpc5 nonsynonymous SNV NM_009428:c.A317G:p.K106R exonic Trpc5 nonsynonymous SNV uc009umv.1:c.A317G:p.K106R exonic ENSMUSG00000041710 nonsynonymous SNV ENSMUST00000040184:c.A317G:p.K106R XqF2 NA NA chrX 140958068 TCCxTGC T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 84 2 0 56.299925 1 0.02 -0.149081 0 17 0 482 0 60 0 0 TT 18.345174 61 0 1671 0 KEEP - Trpc5 NO B[a]P_3 chrX 150774084 150774084 G T exonic 4930524N10Rik nonsynonymous SNV NM_001256259:c.C502A:p.L168I intergenic "4921511M17Rik(dist=218856),4930542N07Rik(dist=142461)" NA NA exonic ENSMUSG00000059663 nonsynonymous SNV ENSMUST00000082357:c.C502A:p.L168I XqF3 "Score=0.929904;Name=No.115026,chrX:149277983" NA chrX 150774084 CAAxGGT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 167 0 0 104.584036 1 0.02 -0.298054 0 34 0 884 0 60 0 0 GG 33.688227 112 0 3162 0 KEEP - 4930524N10Rik YES B[a]P_3 chrX 156921254 156921254 T G exonic Gpr64 nonsynonymous SNV NM_001079848:c.T1719G:p.S573R exonic Gpr64 nonsynonymous SNV uc009utg.1:c.T1719G:p.S573R exonic ENSMUSG00000031298 nonsynonymous SNV ENSMUST00000112404:c.T1719G:p.S573R XqF4 NA NA chrX 156921254 AAGxTTT T G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999998 49 0 0 22.333956 1 0.02 -0.061377 0 7 0 190 0 60 0 0 TT 10.224874 34 0 928 0 KEEP + Gpr64 NO B[a]P_3 chrX 161417893 161417893 C T intronic Mospd2 NA NA intronic Mospd2 NA NA intronic ENSMUSG00000061778 NA NA XqF5 NA NA chrX 161417893 GCAxACC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 154 2 0 45.866123 0.941176 0.02 -0.157765 1 16 26 399 60 60 0 0 CC 32.482951 108 0 2976 0 KEEP - Mospd2 NO B[a]P_3 chrX 163915220 163915220 C A exonic Frmpd4 nonsynonymous SNV NM_001033330:c.G3433T:p.A1145S exonic Frmpd4 nonsynonymous SNV uc009uxf.1:c.G3337T:p.A1113S exonic ENSMUSG00000049176 nonsynonymous SNV ENSMUST00000112145:c.G3433T:p.A1145S XqF5 NA NA chrX 163915220 AGGxCAT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 144 0 0 87.307045 0.966667 0.02 -0.26298 1 29 27 754 60 60 0 0 CC 29.46674 98 0 2659 0 KEEP - Frmpd4 YES B[a]P_3 chrX 166426946 166426946 C G exonic Mid1 nonsynonymous SNV NM_010797:c.C1846G:p.R616G exonic Mid1 nonsynonymous SNV uc009uxz.1:c.C1189G:p.R397G exonic ENSMUSG00000035299 nonsynonymous SNV ENSMUST00000079443:c.C1006G:p.R336G XqF5 NA NA chrX 166426946 AGGxGCG C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 273 0 0 13.020351 0.067669 0.02 2.021861 124 9 2990 228 60 60 0 0 CC 30.629019 102 0 2537 0 KEEP + Mid1 NO B[a]P_3 chrX 19683090 19683090 C T exonic Slc9a7 synonymous SNV NM_177353:c.G2180A:p.X727X exonic Slc9a7 synonymous SNV uc009sst.1:c.G2180A:p.X727X exonic ENSMUSG00000037341 synonymous SNV ENSMUST00000072451:c.G2180A:p.X727X XqA1.3 NA NA chrX 19683090 AGTxATG C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 67 0 0 24.161485 0.4 0.02 -0.219213 15 10 423 267 60 60 0 0 CC 9.326049 31 0 897 0 KEEP - Slc9a7 NO B[a]P_3 chrX 38951816 38951816 G T exonic Gria3 nonsynonymous SNV NM_001281929:c.G1461T:p.M487I exonic Gria3 nonsynonymous SNV uc009tak.2:c.G1461T:p.M487I exonic ENSMUSG00000001986 nonsynonymous SNV ENSMUST00000076349:c.G1461T:p.M487I XqA4 NA NA chrX 38951816 CATxGTT G T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999997 52 0 0 34.638118 1 0.02 -0.096444 0 11 0 294 0 60 0 0 GG 9.32504 31 0 875 0 KEEP + Gria3 YES B[a]P_3 chrX 39455384 39455384 T C intronic Xiap NA NA intronic Xiap NA NA intronic ENSMUSG00000025860 NA NA XqA4 NA NA chrX 39455384 TTGxTTG T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 121 0 0 48.955851 0.514286 0.02 -0.306898 17 18 454 509 60 60 0 0 TT 21.654607 72 0 1980 0 KEEP + Xiap NO B[a]P_3 chrX 47141316 47141316 T C intronic Igsf1 NA NA intronic Igsf1 NA NA intronic ENSMUSG00000031111 NA NA XqA5 NA NA chrX 47141316 CTTxGTA T C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 204 0 0 9.121369 0.083333 0.02 1.160411 55 5 1461 142 60 60 0 0 TT 34.277394 114 0 3111 0 KEEP - Igsf1 NO B[a]P_3 chrX 51078726 51078726 A T exonic Zfp36l3 nonsynonymous SNV NM_001009549:c.T697A:p.S233T exonic Zfp36l3 nonsynonymous SNV uc009tfk.1:c.T697A:p.S233T exonic ENSMUSG00000059334 nonsynonymous SNV ENSMUST00000071711:c.T697A:p.S233T XqA5 NA NA chrX 51078726 CCGxCAG A T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 87 0 0 43.560137 0.586207 0.02 -0.25422 12 17 314 440 60 60 0 0 AA 14.424678 48 0 1280 0 KEEP - Zfp36l3 NO B[a]P_3 chrX 54644747 54644747 C A exonic Rbmx stopgain SNV NM_001166623:c.G106T:p.E36X exonic "Gm7324,Rbmx" stopgain SNV uc009thh.2:c.G106T:p.E36X exonic ENSMUSG00000031134 stopgain SNV ENSMUST00000033470:c.G106T:p.E36X XqA5 NA NA chrX 54644747 CTTxCAC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 222 0 0 125.003613 1 0.02 -0.3765 0 43 0 1046 0 60 0 0 CC 41.707064 139 0 3852 0 KEEP - Rbmx YES B[a]P_3 chrX 6450605 6450605 C A intronic Dgkk NA NA intronic Dgkk NA NA intronic ENSMUSG00000062393 NA NA XqA1.1 NA NA chrX 6450605 TGTxTTT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999999 51 0 0 30.058307 1 0.02 -0.087651 0 10 0 253 0 60 0 0 CC 10.83003 36 0 1035 0 KEEP + Dgkk YES B[a]P_3 chrX 71473770 71473770 A C exonic Flna nonsynonymous SNV NM_010227:c.T6092G:p.I2031S exonic Flna nonsynonymous SNV uc009tny.1:c.T6092G:p.I2031S exonic ENSMUSG00000031328 nonsynonymous SNV ENSMUST00000150554:c.T59G:p.I20S XqA7.3 NA NA chrX 71473770 CTGxTCA A C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 0.999999 58 0 0 21.022515 0.470588 0.02 -0.148794 9 8 215 223 60 60 0 0 AA 10.774624 36 0 940 0 KEEP - Flna NO B[a]P_3 chrX 7206580 7206580 C A exonic Cacna1f synonymous SNV NM_019582:c.C4182A:p.A1394A exonic Cacna1f synonymous SNV uc012hei.1:c.C528A:p.A176A exonic ENSMUSG00000031142 synonymous SNV ENSMUST00000156047:c.C330A:p.A110A XqA1.1 NA NA chrX 7206580 AGCxAGC C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 84 2 0 106.989964 1 0.02 -0.298094 0 34 0 908 0 60 0 0 CC 11.11065 37 0 1017 0 KEEP + Cacna1f YES B[a]P_3 chrX 72759640 72759640 C G UTR5 Vbp1 NA NA UTR5 Vbp1 NA NA UTR5 ENSMUSG00000031197 NA NA XqA7.3 NA NA chrX 72759640 ATGxCTC C G OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 56 0 0 20.011172 0.421053 0.02 -0.16626 11 8 275 218 60 60 0 0 CC 8.72159 29 0 787 0 KEEP + Vbp1 NO B[a]P_3 chrX 7856106 7856106 C T exonic Slc38a5 synonymous SNV NM_172479:c.C1212T:p.I404I exonic Slc38a5 synonymous SNV uc009sot.1:c.C1188T:p.I396I exonic ENSMUSG00000031170 synonymous SNV ENSMUST00000115590:c.C1188T:p.I396I XqA1.1 NA NA chrX 7856106 CATxCGC C T OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 225 0 0 185.333413 0.983607 0.02 1.045244 1 60 28 1590 60 60 0 0 CC 38.503033 128 0 3619 0 KEEP + Slc38a5 NO B[a]P_3 chrX 7856108 7856108 G C exonic Slc38a5 nonsynonymous SNV NM_172479:c.G1214C:p.R405P exonic Slc38a5 nonsynonymous SNV uc009sot.1:c.G1190C:p.R397P exonic ENSMUSG00000031170 nonsynonymous SNV ENSMUST00000115590:c.G1190C:p.R397P XqA1.1 NA NA chrX 7856108 TCCxCGA G C OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 220 0 0 188.111647 0.983333 0.02 1.151576 1 59 27 1622 60 60 0 0 GG 37.780539 126 0 3131 0 KEEP + Slc38a5 NO B[a]P_3 chrX 93464394 93464394 C A exonic Vsig4 nonsynonymous SNV NM_177789:c.G547T:p.G183W exonic Vsig4 nonsynonymous SNV uc009tui.1:c.G547T:p.G183W exonic ENSMUSG00000044206 nonsynonymous SNV ENSMUST00000050707:c.G547T:p.G183W XqC3 NA NA chrX 93464394 TACxTGA C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 67 0 0 96.158033 1 0.02 -0.271769 0 31 0 814 0 60 0 0 CC 7.520263 25 0 708 0 KEEP - Vsig4 YES B[a]P_3 chrX 98047168 98047168 C A exonic Tex11 nonsynonymous SNV NM_031384:c.G2290T:p.A764S exonic Tex11 nonsynonymous SNV uc009tws.2:c.G2290T:p.A764S exonic ENSMUSG00000009670 nonsynonymous SNV ENSMUST00000009814:c.G2290T:p.A764S XqC3 NA NA chrX 98047168 ATGxCAT C A OtA1977_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 81 0 0 87.531726 1 0.02 -0.245481 0 28 0 742 0 60 0 0 CC 14.436586 48 0 1316 0 KEEP - Tex11 YES MNNG_1 chr10 102282247 102282247 C T intergenic "Rassf9(dist=273053),Alx1(dist=188234)" NA NA intergenic "Rassf9(dist=273053),Alx1(dist=188234)" NA NA intergenic "ENSMUSG00000044921(dist=273053),ENSMUSG00000092348(dist=188234)" NA NA 10qD1 NA NA chr10 102282247 CATxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 132 0 0 8.138213 0.16 0.02 -0.21922 21 4 599 110 60 60 0 0 CC 27.074276 90 0 2584 0 KEEP NA Rassf9 YES MNNG_1 chr10 105278564 105278564 C T exonic Ccdc59 nonsynonymous SNV NM_025602:c.C7T:p.P3S exonic Ccdc59 nonsynonymous SNV uc007gyp.1:c.C7T:p.P3S exonic ENSMUSG00000019897 nonsynonymous SNV ENSMUST00000020049:c.C7T:p.P3S 10qD1 NA NA chr10 105278564 GCGxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 260 2 0 75.586337 0.302752 0.02 2.435967 76 33 2178 889 60 60 0 0 CC 29.336632 98 0 2592 0 KEEP + Ccdc59 YES MNNG_1 chr10 110196967 110196967 C T exonic E2f7 synonymous SNV NM_178609:c.C466T:p.L156L exonic E2f7 synonymous SNV uc007gzo.1:c.C466T:p.L156L exonic ENSMUSG00000020185 synonymous SNV ENSMUST00000073781:c.C466T:p.L156L 10qD1 NA NA chr10 110196967 TTTxTAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 84 2 0 30.23775 0.352941 0.02 -0.298184 22 12 646 341 60 60 0 0 CC 11.731861 39 0 1116 0 KEEP + E2f7 YES MNNG_1 chr10 114731998 114731998 C T exonic Rab21 nonsynonymous SNV NM_024454:c.G458A:p.G153E exonic Rab21 nonsynonymous SNV uc007haz.1:c.G458A:p.G153E exonic ENSMUSG00000020132 nonsynonymous SNV ENSMUST00000020343:c.G458A:p.G153E 10qD2 NA NA chr10 114731998 GCTxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 71 2 0 9.924846 0.263158 0.02 -0.165904 14 5 410 123 60 60 0 0 CC 12.031457 40 0 1129 0 KEEP - Rab21 YES MNNG_1 chr10 118650811 118650811 C T exonic Cand1 nonsynonymous SNV NM_027994:c.G1085A:p.S362N exonic Cand1 nonsynonymous SNV uc007hec.2:c.G1085A:p.S362N exonic ENSMUSG00000020114 nonsynonymous SNV ENSMUST00000020315:c.G1085A:p.S362N 10qD2 NA NA chr10 118650811 GTGxTAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 163 4 0 37.353232 0.313725 0.02 1.248035 35 16 1020 435 60 60 0 0 CC 25.550483 85 0 2368 0 KEEP - Cand1 YES MNNG_1 chr10 122463413 122463413 G A intronic Mon2 NA NA intronic Mon2 NA NA intronic ENSMUSG00000034602 NA NA 10qD2 NA NA chr10 122463413 AGTxTGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 139 4 0 92.469134 0.544118 0.02 0.992438 31 37 892 952 60 60 0 0 GG 16.531558 55 0 1497 0 KEEP - Mon2 YES MNNG_1 chr10 126428551 126428551 G A intronic Ctdsp2 NA NA intronic Ctdsp2 NA NA intronic ENSMUSG00000078429 NA NA 10qD3 NA NA chr10 126428551 GTAxCTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 121 0 0 62.965065 0.5 0.02 -0.420642 24 24 715 660 60 60 0 0 GG 17.748374 59 0 1680 0 KEEP + Ctdsp2 YES MNNG_1 chr10 126517696 126517696 A T exonic Agap2 nonsynonymous SNV NM_001033263:c.A1019T:p.K340M exonic Agap2 nonsynonymous SNV uc007hhx.1:c.A1019T:p.K340M exonic ENSMUSG00000025422 nonsynonymous SNV ENSMUST00000039259:c.A1019T:p.K340M 10qD3 NA NA chr10 126517696 TCAxGTT A T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999619 0.999622 0.999997 124 2 0 53.336036 0.270588 0.02 0.950472 62 23 1690 639 60 60 0 0 AA 9.016162 30 0 821 0 KEEP + Agap2 NO MNNG_1 chr10 126722741 126722741 G A exonic Mbd6 nonsynonymous SNV NM_033072:c.C1273T:p.P425S exonic Mbd6 nonsynonymous SNV uc007hiw.1:c.C1273T:p.P425S exonic ENSMUSG00000025409 nonsynonymous SNV ENSMUST00000026476:c.C1273T:p.P425S 10qD3 NA NA chr10 126722741 AAGxGCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998865 0.998867 0.999997 123 2 0 117.085803 0.545455 0.02 1.118254 35 42 1024 1201 60 60 0 0 GG 9.624561 32 0 886 0 KEEP - Mbd6 YES MNNG_1 chr10 126955894 126955894 C T exonic Shmt2 nonsynonymous SNV NM_001252316:c.G968A:p.G323D exonic Shmt2 nonsynonymous SNV uc007hju.1:c.G977A:p.G326D exonic ENSMUSG00000025403 nonsynonymous SNV ENSMUST00000026470:c.G977A:p.G326D 10qD3 NA NA chr10 126955894 GGGxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 282 6 0 55.002894 0.235772 0.02 2.297826 94 29 2638 703 60 60 0 0 CC 32.114039 107 0 2882 0 KEEP - Shmt2 YES MNNG_1 chr10 127144163 127144163 C T intronic Myo1a NA NA intronic Myo1a NA NA intronic ENSMUSG00000025401 NA NA 10qD3 NA NA chr10 127144163 TTTxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 64 0 0 14.916742 0.315789 0.02 -0.166629 13 6 380 172 60 60 0 0 CC 9.326212 31 0 900 0 KEEP + Myo1a YES MNNG_1 chr10 127430765 127430765 C A exonic Hsd17b6 nonsynonymous SNV NM_013786:c.G623T:p.S208I exonic Hsd17b6 nonsynonymous SNV uc007hky.1:c.G623T:p.S208I exonic ENSMUSG00000025396 nonsynonymous SNV ENSMUST00000026462:c.G623T:p.S208I 10qD3 NA NA chr10 127430765 AAGxTCC C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 253 2 0 23.234808 0.157143 0.02 1.081334 59 11 1724 312 60 60 0 0 CC 38.50349 128 0 3621 0 KEEP - Hsd17b6 NO MNNG_1 chr10 127481080 127481080 C T exonic Naca nonsynonymous SNV NM_001113199:c.C4924T:p.P1642S exonic Naca nonsynonymous SNV uc007hlc.2:c.C4924T:p.P1642S exonic ENSMUSG00000061315 nonsynonymous SNV ENSMUST00000092048:c.C4924T:p.P1642S 10qD3 NA NA chr10 127481080 CTGxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 76 0 0 53.530126 0.633333 0.02 -0.262659 11 19 298 530 60 60 0 0 CC 12.331081 41 0 1124 0 KEEP + Naca YES MNNG_1 chr10 127648061 127648061 C T exonic Spryd4 nonsynonymous SNV NM_025716:c.G472A:p.E158K exonic Spryd4 nonsynonymous SNV uc007hlq.1:c.G472A:p.E158K exonic ENSMUSG00000051346 nonsynonymous SNV ENSMUST00000061995:c.G472A:p.E158K 10qD3 NA NA chr10 127648061 CCTxATA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 173 2 0 144.469853 0.588889 0.02 0.897498 37 53 1073 1457 60 60 0 0 CC 18.341599 61 0 1740 0 KEEP - Spryd4 YES MNNG_1 chr10 128015221 128015221 C T exonic Erbb3 synonymous SNV NM_010153:c.G1548A:p.Q516Q exonic Erbb3 synonymous SNV uc007hnm.1:c.G1548A:p.Q516Q exonic ENSMUSG00000018166 synonymous SNV ENSMUST00000082059:c.G1548A:p.Q516Q 10qD3 NA NA chr10 128015221 GCAxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 308 4 0 115.862467 0.343066 0.02 2.189066 90 47 2609 1317 60 60 0 0 CC 38.787292 129 0 3632 0 KEEP - Erbb3 YES MNNG_1 chr10 129311364 129311364 C G exonic Olfr814 nonsynonymous SNV NM_207159:c.G448C:p.G150R exonic Olfr814 nonsynonymous SNV uc007hqv.1:c.G448C:p.G150R exonic ENSMUSG00000059134 nonsynonymous SNV ENSMUST00000081367:c.G448C:p.G150R 10qD3 "Score=0.940244;Name=No.6050,chr10:129323542" NA chr10 129311364 ATCxAGT C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 104 4 30 33.26697 0.733333 0.02 -0.13154 4 11 115 318 36 36 0 0 CC 20.756616 69 0 1970 0 KEEP - Olfr814 NO MNNG_1 chr10 129855420 129855420 C T exonic Vmn2r85 nonsynonymous SNV NM_001102602:c.G2450A:p.S817N exonic Vmn2r85 nonsynonymous SNV uc009vac.1:c.G2450A:p.S817N exonic ENSMUSG00000092048 nonsynonymous SNV ENSMUST00000171811:c.G2450A:p.S817N 10qD3 "Score=0.921938;Name=No.6062,chr10:129882212" NA chr10 129855420 GCAxTAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 340 0 140 78.169685 0.651163 0.02 -0.377058 15 28 426 769 60 60 0 0 CC 63.747247 212 0 5813 0 KEEP - Vmn2r85 YES MNNG_1 chr10 29064381 29064381 G A exonic Echdc1 synonymous SNV NM_001110195:c.G726A:p.E242E exonic Echdc1 synonymous SNV uc007esw.2:c.G726A:p.E242E exonic ENSMUSG00000019883 synonymous SNV ENSMUST00000020034:c.G795A:p.E265E 10qA4 NA NA chr10 29064381 GGAxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 56 0 0 14.786686 0.333333 0.02 -0.157855 12 6 346 169 60 60 0 0 GG 10.829676 36 0 1027 0 KEEP + Echdc1 YES MNNG_1 chr10 38795132 38795132 G A intronic Lama4 NA NA intronic Lama4 NA NA intronic ENSMUSG00000019846 NA NA 10qB1 NA NA chr10 38795132 GTAxCAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 60 0 0 35.028395 0.590909 0.02 -0.192882 9 13 264 353 60 60 0 0 GG 8.388601 31 1 871 8 KEEP + Lama4 YES MNNG_1 chr10 57245113 57245113 C T intronic Serinc1 NA NA UTR3 AIGP-2 NA NA intronic ENSMUSG00000019877 NA NA 10qB4 NA NA chr10 57245113 TCTxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999998 62 0 0 14.309603 0.285714 0.02 -0.184026 15 6 432 169 60 60 0 0 CC 9.925436 33 0 938 0 KEEP - Serinc1 YES MNNG_1 chr10 59593863 59593863 C T exonic Spock2 synonymous SNV NM_052994:c.C1020T:p.G340G exonic Spock2 synonymous SNV uc007fel.1:c.C1020T:p.G340G exonic ENSMUSG00000058297 synonymous SNV ENSMUST00000121820:c.C1020T:p.G340G 10qB4 NA NA chr10 59593863 TGGxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800141 0.800245 0.999869 59 1 0 30.030392 0.363636 0.02 -0.306934 21 12 600 337 60 60 0 0 CC 6.31595 21 0 577 0 KEEP + Spock2 YES MNNG_1 chr10 5976876 5976876 C G exonic Zbtb2 synonymous SNV NM_001033466:c.C360G:p.S120S exonic Zbtb2 synonymous SNV uc007ehf.2:c.C360G:p.S120S exonic ENSMUSG00000075327 synonymous SNV ENSMUST00000100077:c.C360G:p.S120S 10qA1 "Score=0.959986;Name=No.8798,chr2:11016663" NA chr10 5976876 TTCxCAT C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 50 0 0 17.590427 0.296296 0.02 -0.236752 19 8 554 209 60 60 0 0 CC 5.113829 17 0 481 0 KEEP + Zbtb2 NO MNNG_1 chr10 60552108 60552108 C T UTR5 Pcbd1 NA NA UTR5 Pcbd1 NA NA UTR5 ENSMUSG00000020098 NA NA 10qB4 NA NA chr10 60552108 CTGxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.812496 0.818465 0.992708 59 0 0 50.467293 0.527778 0.02 -0.315278 17 19 485 522 60 60 0 0 CC 3.008073 10 0 282 0 KEEP + Pcbd1 YES MNNG_1 chr10 61212023 61212023 C T splicing H2afy2(NM_207000:exon6:c.588+1G>A) NA NA splicing H2afy2(uc007fgm.1:exon6:c.588+1G>A) NA NA splicing "ENSMUSG00000020086(ENSMUST00000169265:exon6:c.444+1G>A,ENSMUST00000020283:exon6:c.588+1G>A,ENSMUST00000165447:exon6:c.588+1G>A)" NA NA 10qB4 NA NA chr10 61212023 TTAxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 102 0 0 27.682246 0.244898 0.02 -0.438474 37 12 1058 338 60 60 0 0 CC 9.578915 32 0 860 0 KEEP - H2afy2 YES MNNG_1 chr10 62341712 62341712 C T exonic Tet1 nonsynonymous SNV NM_001253857:c.G1051A:p.A351T exonic Tet1 nonsynonymous SNV uc007fje.2:c.G1051A:p.A351T exonic ENSMUSG00000047146 nonsynonymous SNV ENSMUST00000050826:c.G1051A:p.A351T 10qB4 NA NA chr10 62341712 TGGxATC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457737 0.457757 0.999957 50 0 0 19.055966 0.380952 0.02 -0.192862 13 8 357 213 60 60 0 0 CC 7.820241 26 0 720 0 KEEP - Tet1 YES MNNG_1 chr10 75101036 75101036 C T intronic Susd2 NA NA intronic Susd2 NA NA intronic ENSMUSG00000006342 NA NA 10qC1 NA NA chr10 75101036 TGAxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 236 0 0 74.250676 0.266667 0.02 2.338142 88 32 2503 892 60 60 0 0 CC 25.862084 86 0 2347 0 KEEP - Susd2 YES MNNG_1 chr10 75761409 75761409 C T intronic Dip2a NA NA intronic "Dip2a,mKIAA0184" NA NA intronic ENSMUSG00000020231 NA NA 10qC1 NA NA chr10 75761409 GAGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 58 2 0 17.239459 0.285714 0.02 -0.245369 20 8 566 207 60 60 0 0 CC 6.015643 20 0 555 0 KEEP - Dip2a YES MNNG_1 chr10 75875335 75875335 C T exonic Pcnt synonymous SNV NM_001282992:c.G2694A:p.E898E exonic Pcnt synonymous SNV uc007fuk.1:c.G2694A:p.E898E exonic ENSMUSG00000001151 synonymous SNV ENSMUST00000001179:c.G2694A:p.E898E 10qC1 NA NA chr10 75875335 CTGxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 224 4 0 105.387977 0.388889 0.02 2.391251 66 42 1935 1167 60 60 0 0 CC 23.462326 78 0 2196 0 KEEP - Pcnt YES MNNG_1 chr10 75956169 75956169 C T intronic Mcm3ap NA NA intronic Mcm3ap NA NA intronic ENSMUSG00000001150 NA NA 10qC1 NA NA chr10 75956169 TACxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 87 0 0 34.84758 0.419355 0.02 -0.271806 18 13 512 378 60 60 0 0 CC 13.215418 44 0 1195 0 KEEP + Mcm3ap YES MNNG_1 chr10 76074219 76074219 C T intronic Col6a2 NA NA intronic Col6a2 NA NA intronic ENSMUSG00000020241 NA NA 10qC1 NA NA chr10 76074219 TTAxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 335 0 0 104.726962 0.295302 0.02 3.752757 105 44 3045 1230 60 60 0 0 CC 39.392715 131 0 3627 0 KEEP - Col6a2 YES MNNG_1 chr10 77397817 77397817 C T exonic Trpm2 nonsynonymous SNV NM_138301:c.G2029A:p.A677T exonic Trpm2 nonsynonymous SNV uc007fwm.1:c.G571A:p.A191T exonic ENSMUSG00000009292 nonsynonymous SNV ENSMUST00000105400:c.G2029A:p.A677T 10qC1 NA NA chr10 77397817 CTGxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 139 2 0 55.491313 0.298701 0.02 1.118604 54 23 1542 649 60 60 0 0 CC 12.933559 43 0 1191 0 KEEP - Trpm2 YES MNNG_1 chr10 77660569 77660569 C T exonic Trappc10 nonsynonymous SNV NM_001081055:c.G2908A:p.D970N exonic Trappc10 nonsynonymous SNV uc007fxm.1:c.G2908A:p.D970N exonic ENSMUSG00000000374 nonsynonymous SNV ENSMUST00000000384:c.G2908A:p.D970N 10qC1 NA NA chr10 77660569 AGTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 135 1 0 61.837457 0.479167 0.02 -0.420947 25 23 729 653 60 60 0 0 CC 20.455685 68 0 1935 0 KEEP - Trappc10 YES MNNG_1 chr10 78480244 78480244 C T exonic Olfr1351 nonsynonymous SNV NM_147040:c.C176T:p.P59L exonic Olfr1351 nonsynonymous SNV uc007fym.1:c.C176T:p.P59L exonic ENSMUSG00000063216 nonsynonymous SNV ENSMUST00000080730:c.C176T:p.P59L 10qC1 NA NA chr10 78480244 CACxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 240 3 0 60.054568 0.396552 0.02 1.284872 35 23 1021 660 60 60 0 0 CC 45.720371 152 0 4250 0 KEEP + Olfr1351 YES MNNG_1 chr10 79473947 79473947 T A intronic Abca7 NA NA intronic Abca7 NA NA intronic ENSMUSG00000035722 NA NA 10qC1 NA NA chr10 79473947 ACCxGGG T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 148 1 0 65.448151 0.376812 0.02 1.179694 43 26 1231 729 60 60 0 0 TT 20.453013 68 0 1884 0 KEEP + Abca7 NO MNNG_1 chr10 79518804 79518804 G C exonic Gpx4 unknown UNKNOWN exonic Gpx4 unknown UNKNOWN exonic ENSMUSG00000075706 unknown UNKNOWN 10qC1 NA NA chr10 79518804 ACGxCTG G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 198 0 0 61.256325 0.276596 0.02 1.069432 68 26 1911 729 60 60 0 0 GG 27.888624 93 0 2507 0 KEEP + Gpx4 NO MNNG_1 chr10 79649714 79649714 C T exonic Efna2 nonsynonymous SNV NM_007909:c.C346T:p.P116S exonic Efna2 nonsynonymous SNV uc007gcg.2:c.C346T:p.P116S exonic ENSMUSG00000003070 nonsynonymous SNV ENSMUST00000003154:c.C346T:p.P116S 10qC1 NA NA chr10 79649714 GCGxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934452 0.934492 0.999957 78 0 0 27.294593 0.266667 0.02 -0.403289 33 12 952 329 60 60 0 0 CC 7.820187 26 0 720 0 KEEP + Efna2 YES MNNG_1 chr10 80006123 80006123 C T exonic Rexo1 nonsynonymous SNV NM_025852:c.G3100A:p.E1034K exonic Rexo1 nonsynonymous SNV uc007gdq.1:c.G1069A:p.E357K exonic ENSMUSG00000047417 nonsynonymous SNV ENSMUST00000057910:c.G3100A:p.E1034K 10qC1 NA NA chr10 80006123 CCTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888779 0.888875 0.999892 73 2 0 31.078434 0.317073 0.02 -0.359496 28 13 808 360 60 60 0 0 CC 6.617997 22 0 625 0 KEEP - Rexo1 YES MNNG_1 chr10 80070245 80070245 C T UTR3 Adat3 NA NA UTR3 Adat3 NA NA UTR3 ENSMUSG00000035370 NA NA 10qC1 NA NA chr10 80070245 GGCxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 245 7 0 142.911741 0.386207 0.02 2.298134 89 56 2563 1582 60 60 0 0 CC 21.958683 73 0 2079 0 KEEP + Adat3 YES MNNG_1 chr10 80070325 80070325 C T UTR3 Adat3 NA NA UTR3 Adat3 NA NA UTR3 ENSMUSG00000035370 NA NA 10qC1 NA NA chr10 80070325 TGTxTTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999802 0.999804 0.999998 129 2 0 95.519946 0.430233 0.02 0.914715 49 37 1452 1034 60 60 0 0 CC 9.927447 33 0 948 0 KEEP + Adat3 YES MNNG_1 chr10 80271629 80271629 C T exonic Jsrp1 synonymous SNV NM_028001:c.G687A:p.G229G exonic Jsrp1 synonymous SNV uc007geu.1:c.G567A:p.G189G exonic ENSMUSG00000020216 synonymous SNV ENSMUST00000020435:c.G567A:p.G189G 10qC1 NA NA chr10 80271629 CTCxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 341 4 0 130.996914 0.335443 0.02 3.968864 105 53 3078 1495 60 60 0 0 CC 39.622125 132 0 3616 0 KEEP - Jsrp1 YES MNNG_1 chr10 80291492 80291492 C T exonic Oaz1 unknown UNKNOWN ncRNA_exonic "AK087942,Oaz1" NA NA exonic ENSMUSG00000035242 synonymous SNV ENSMUST00000060987:c.C498T:p.L166L 10qC1 NA NA chr10 80291492 ACTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 134 4 0 50.563 0.308824 0.02 1.090133 47 21 1382 588 60 60 0 0 CC 15.041006 50 0 1425 0 KEEP + Oaz1 YES MNNG_1 chr10 80367958 80367958 C T exonic Lmnb2 synonymous SNV NM_010722:c.G657A:p.L219L exonic Lmnb2 synonymous SNV uc007gfj.1:c.G291A:p.L97L exonic ENSMUSG00000062075 synonymous SNV ENSMUST00000105332:c.G291A:p.L97L 10qC1 NA NA chr10 80367958 CACxAAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 206 2 0 79.675043 0.36 0.02 2.692977 64 36 1858 909 60 60 0 0 CC 25.855961 86 0 2403 0 KEEP - Lmnb2 YES MNNG_1 chr10 80653337 80653337 C T intronic Dapk3 NA NA intronic Dapk3 NA NA intronic ENSMUSG00000034974 NA NA 10qC1 NA NA chr10 80653337 CTCxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 242 0 0 91.520867 0.310924 0.02 2.517153 82 37 2385 1059 60 60 0 0 CC 25.263032 84 0 2342 0 KEEP + Dapk3 YES MNNG_1 chr10 80788243 80788243 C T exonic Cactin synonymous SNV NM_027381:c.C1863T:p.F621F exonic 2510012J08Rik synonymous SNV uc007ghf.2:c.C1863T:p.F621F exonic ENSMUSG00000034889 synonymous SNV ENSMUST00000050867:c.C1863T:p.F621F 10qC1 NA NA chr10 80788243 CTTxCGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 262 3 0 123.978185 0.357664 0.02 2.180205 88 49 2588 1394 60 60 0 0 CC 24.04728 80 0 2232 0 KEEP + Cactin YES MNNG_1 chr10 80812922 80812922 C T UTR5 Hmg20b NA NA UTR5 Hmg20b NA NA UTR5 ENSMUSG00000020232 NA NA 10qC1 NA NA chr10 80812922 CCAxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 168 5 0 96.304686 0.408602 0.02 0.85341 55 38 1591 1055 60 60 0 0 CC 14.726434 49 0 1331 0 KEEP - Hmg20b YES MNNG_1 chr10 80939647 80939647 C T exonic Celf5 synonymous SNV NM_176954:c.G195A:p.Q65Q exonic Celf5 synonymous SNV uc007gid.2:c.G195A:p.Q65Q exonic ENSMUSG00000034818 synonymous SNV ENSMUST00000118763:c.G195A:p.Q65Q 10qC1 NA NA chr10 80939647 TGTxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 551 10 0 218.195727 0.37069 0.02 4.728849 146 86 4285 2436 60 60 0 0 CC 67.832993 229 1 6566 9 KEEP - Celf5 YES MNNG_1 chr10 81085247 81085247 C T exonic Sirt6 nonsynonymous SNV NM_001163430:c.G796A:p.A266T exonic Sirt6 nonsynonymous SNV uc007giy.2:c.G916A:p.A306T exonic ENSMUSG00000034748 nonsynonymous SNV ENSMUST00000042923:c.G916A:p.A306T 10qC1 NA NA chr10 81085247 CTGxACC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 173 1 0 69.861748 0.290909 0.02 2.221432 78 32 2258 834 60 60 0 0 CC 13.235383 44 0 1240 0 KEEP - Sirt6 YES MNNG_1 chr10 82953374 82953374 C T exonic Aldh1l2 nonsynonymous SNV NM_153543:c.G2722A:p.E908K exonic Aldh1l2 nonsynonymous SNV uc007gkh.2:c.G2722A:p.E908K exonic ENSMUSG00000020256 nonsynonymous SNV ENSMUST00000020497:c.G2722A:p.E908K 10qC1 NA NA chr10 82953374 CCTxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 76 0 0 18.862171 0.266667 0.02 -0.263111 22 8 653 226 60 60 0 0 CC 11.726865 39 0 1088 0 KEEP - Aldh1l2 YES MNNG_1 chr10 84053852 84053852 C T exonic Tcp11l2 nonsynonymous SNV NM_146008:c.C434T:p.T145M exonic Tcp11l2 nonsynonymous SNV uc007gkr.1:c.C434T:p.T145M exonic ENSMUSG00000020034 nonsynonymous SNV ENSMUST00000020223:c.C434T:p.T145M 10qC1 NA NA chr10 84053852 TCAxGCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098977 0.099721 0.99254 21 0 0 9.784794 0.4 0.02 -0.087688 6 4 169 108 60 60 0 0 CC 2.705947 9 0 237 0 KEEP + Tcp11l2 YES MNNG_1 chr10 85342101 85342101 C T exonic Pwp1 synonymous SNV NM_133993:c.C705T:p.S235S exonic Pwp1 synonymous SNV uc007gnc.2:c.C705T:p.S235S exonic ENSMUSG00000001785 synonymous SNV ENSMUST00000001836:c.C705T:p.S235S 10qC1 NA NA chr10 85342101 AAGxAAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 62 2 0 18.381539 0.333333 0.02 -0.210452 16 8 463 212 60 60 0 0 CC 9.024624 30 0 855 0 KEEP + Pwp1 YES MNNG_1 chr10 86158184 86158184 C T intronic Hsp90b1 NA NA intronic Hsp90b1 NA NA intronic ENSMUSG00000020048 NA NA 10qC1 NA NA chr10 86158184 ACTxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196288 0.196312 0.999879 41 0 0 12.622373 0.357143 0.02 -0.122784 9 5 267 142 60 60 0 0 CC 6.618315 22 0 631 0 KEEP - Hsp90b1 YES MNNG_1 chr10 88281269 88281269 C T exonic Utp20 nonsynonymous SNV NM_175158:c.G700A:p.G234R exonic Utp20 nonsynonymous SNV uc007grx.2:c.G700A:p.G234R exonic ENSMUSG00000004356 nonsynonymous SNV ENSMUST00000004470:c.G700A:p.G234R 10qC1 NA NA chr10 88281269 CTCxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 77 0 0 45.877369 0.485714 0.02 -0.30694 18 17 520 483 60 60 0 0 CC 9.626035 32 0 906 0 KEEP - Utp20 YES MNNG_1 chr10 95599260 95599260 C T intergenic "Eea1(dist=91108),Btg1(dist=480375)" NA NA intergenic "Eea1(dist=91108),Btg1(dist=480375)" NA NA intergenic "ENSMUSG00000036499(dist=91108),ENSMUSG00000093038(dist=27705)" NA NA 10qC2 NA NA chr10 95599260 CTTxTCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 220 2 0 35.858435 0.202532 0.02 0.994153 63 16 1844 455 60 60 0 0 CC 29.118836 97 0 2764 0 KEEP NA Eea1 YES MNNG_1 chr11 100239718 100239718 C T exonic Jup synonymous SNV NM_010593:c.G1182A:p.K394K exonic Jup nonsynonymous SNV uc011yez.1:c.G730A:p.D244N exonic ENSMUSG00000001552 synonymous SNV ENSMUST00000001592:c.G1182A:p.K394K 11qD NA NA chr11 100239718 GATxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 126 0 0 190.02803 1 0.02 1.186644 0 58 0 1624 0 60 0 0 CC 15.33027 51 0 1447 0 KEEP - Jup YES MNNG_1 chr11 100284902 100284902 C T exonic Fkbp10 nonsynonymous SNV NM_001163481:c.C1546T:p.P516S exonic Fkbp10 nonsynonymous SNV uc007llb.2:c.C1549T:p.P517S exonic ENSMUSG00000001555 nonsynonymous SNV ENSMUST00000107400:c.C1213T:p.P405S 11qD NA NA chr11 100284902 GTGxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.99986 47 0 0 82.871832 1 0.02 -0.236666 0 26 0 705 0 60 0 0 CC 5.714974 19 0 529 0 KEEP + Fkbp10 YES MNNG_1 chr11 101026457 101026457 C T exonic Plekhh3 synonymous SNV NM_146030:c.G1329A:p.R443R exonic Plekhh3 synonymous SNV uc007lnq.1:c.G1329A:p.R443R exonic ENSMUSG00000035172 synonymous SNV ENSMUST00000043397:c.G1329A:p.R443R 11qD NA NA chr11 101026457 GTTxCGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 52 0 0 65.331026 0.954545 0.02 -0.192845 1 21 29 571 60 60 0 0 CC 8.422385 28 0 787 0 KEEP - Plekhh3 YES MNNG_1 chr11 101163025 101163025 C T intronic Becn1 NA NA intronic Becn1 NA NA intronic ENSMUSG00000035086 NA NA 11qD NA NA chr11 101163025 TTTxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 263 3 0 244.438906 0.927711 0.02 0.958625 6 77 181 2171 60 60 0 0 CC 40.009187 133 0 3789 0 KEEP - Becn1 YES MNNG_1 chr11 101272351 101272351 C T intronic Aarsd1 NA NA intronic Aarsd1 NA NA intronic ENSMUSG00000075528 NA NA 11qD NA NA chr11 101272351 GCTxACC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 198 5 0 269.914512 0.925532 0.02 0.863298 7 87 194 2394 60 60 0 0 CC 21.356424 71 0 2007 0 KEEP - Aarsd1 YES MNNG_1 chr11 102057814 102057814 C T intronic Hdac5 NA NA intronic Hdac5 NA NA intronic ENSMUSG00000008855 NA NA 11qD NA NA chr11 102057814 TGTxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98953 0.989542 0.999988 100 2 0 180.051919 0.95 0.02 1.160586 3 57 91 1581 60 60 0 0 CC 8.121669 27 0 761 0 KEEP - Hdac5 YES MNNG_1 chr11 102148640 102148640 C T exonic Tmub2 synonymous SNV NM_028076:c.C54T:p.S18S exonic Tmub2 synonymous SNV uc007lrd.1:c.C54T:p.S18S exonic ENSMUSG00000034757 synonymous SNV ENSMUST00000156326:c.C54T:p.S18S 11qD NA NA chr11 102148640 CAGxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865708 0.865745 0.999957 70 0 0 119.884983 0.974359 0.02 -0.341965 1 38 30 1038 60 60 0 0 CC 7.808466 26 0 708 0 KEEP + Tmub2 YES MNNG_1 chr11 102168521 102168521 C T intronic Ubtf NA NA intronic Ubtf NA NA intronic ENSMUSG00000020923 NA NA 11qD NA NA chr11 102168521 CCTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 183 0 0 323.967556 0.961538 0.02 2.452341 4 100 120 2837 60 60 0 0 CC 20.754296 69 0 1932 0 KEEP - Ubtf YES MNNG_1 chr11 102417402 102417402 C T exonic Gpatch8 nonsynonymous SNV NM_001159492:c.G37A:p.D13N exonic Gpatch8 nonsynonymous SNV uc011yfs.1:c.G37A:p.D13N exonic ENSMUSG00000034621 nonsynonymous SNV ENSMUST00000143842:c.G37A:p.D13N 11qE1 NA NA chr11 102417402 AGTxTCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 163 6 0 161.13657 0.980392 0.02 1.239712 1 50 29 1395 60 60 0 0 CC 23.149143 77 0 2156 0 KEEP - Gpatch8 YES MNNG_1 chr11 102661771 102661771 C T exonic Gjc1 nonsynonymous SNV NM_001159382:c.G719A:p.G240D exonic Gjc1 nonsynonymous SNV uc007lsk.2:c.G719A:p.G240D exonic ENSMUSG00000034520 nonsynonymous SNV ENSMUST00000068933:c.G719A:p.G240D 11qE1 NA NA chr11 102661771 AGGxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 79 0 0 95.254781 0.861111 0.02 -0.314958 5 31 123 866 60 60 0 0 CC 9.903035 33 0 887 0 KEEP - Gjc1 YES MNNG_1 chr11 103407242 103407242 C T intronic Gm884 NA NA intronic Gm884 NA NA intronic ENSMUSG00000034239 NA NA 11qE1 NA NA chr11 103407242 AGCxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 41 0 0 45.065425 1 0.02 -0.122738 0 14 0 384 0 60 0 0 CC 6.918523 23 0 647 0 KEEP - Gm884 YES MNNG_1 chr11 103478789 103478789 C T intergenic "Gm884(dist=2736),Lyzl6(dist=13600)" NA NA intergenic "Gm884(dist=2736),Lyzl6(dist=13600)" NA NA exonic ENSMUSG00000034239 synonymous SNV ENSMUST00000059279:c.G3666A:p.K1222K 11qE1 NA NA chr11 103478789 CGTxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999999 56 0 0 46.270547 1 0.02 -0.122773 0 14 0 396 0 60 0 0 CC 10.529035 35 0 1003 0 KEEP NA Gm884 YES MNNG_1 chr11 105831853 105831853 C T ncRNA_intronic Gm11651 NA NA ncRNA_intronic AK016887 NA NA ncRNA_intronic ENSMUSG00000085297 NA NA 11qE1 NA NA chr11 105831853 CTGxTCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.023894 0.024074 0.99254 15 0 0 16.081543 1 0.02 -0.043842 0 5 0 137 0 60 0 0 CC 2.686849 9 0 230 0 KEEP - Gm11651 YES MNNG_1 chr11 106261062 106261062 C T intronic Ern1 NA NA intronic Ern1 NA NA intronic ENSMUSG00000020715 NA NA 11qE1 NA NA chr11 106261062 CCTxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999999 59 0 0 31.610679 0.909091 0.02 -0.096466 1 10 31 283 60 60 0 0 CC 10.828559 36 0 1013 0 KEEP - Ern1 YES MNNG_1 chr11 106643465 106643465 C T exonic Ddx5 nonsynonymous SNV NM_007840:c.G1547A:p.R516K exonic Ddx5 nonsynonymous SNV uc007lzp.1:c.G83A:p.R28K exonic ENSMUSG00000020719 nonsynonymous SNV ENSMUST00000021062:c.G1547A:p.R516K 11qE1 NA NA chr11 106643465 CCTxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 140 0 7 100.341893 0.96875 0.02 -0.28062 1 31 30 875 60 60 0 0 CC 24.668543 82 0 2361 0 KEEP - Ddx5 YES MNNG_1 chr11 109811458 109811458 C T exonic Abca8b nonsynonymous SNV NM_013851:c.G3202A:p.A1068T exonic Abca8b nonsynonymous SNV uc007mdc.2:c.G3016A:p.A1006T exonic ENSMUSG00000020620 nonsynonymous SNV ENSMUST00000106669:c.G3016A:p.A1006T 11qE1 NA NA chr11 109811458 TTGxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 55 1 0 56.991453 0.95 0.02 -0.17509 1 19 28 497 60 60 0 0 CC 9.261091 31 0 824 0 KEEP - Abca8b YES MNNG_1 chr11 109892199 109892199 C T exonic Abca8a nonsynonymous SNV NM_153145:c.G4339A:p.D1447N exonic Abca8a nonsynonymous SNV uc007mdf.1:c.G4255A:p.D1419N exonic ENSMUSG00000041828 nonsynonymous SNV ENSMUST00000106664:c.G4255A:p.D1419N 11qE1 NA NA chr11 109892199 GGTxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999999 68 1 0 96.117429 1 0.02 -0.254314 0 29 0 823 0 60 0 0 CC 10.51661 35 0 959 0 KEEP - Abca8a YES MNNG_1 chr11 115473294 115473294 C T exonic Mif4gd nonsynonymous SNV NM_001243586:c.G5A:p.S2N exonic Mif4gd nonsynonymous SNV uc007mib.1:c.G5A:p.S2N exonic ENSMUSG00000020743 nonsynonymous SNV ENSMUST00000106507:c.G5A:p.S2N 11qE2 NA NA chr11 115473294 TCGxTCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 70 1 0 75.472413 0.923077 0.02 -0.236337 2 24 36 669 60 60 0 0 CC 10.519378 35 0 985 0 KEEP - Mif4gd YES MNNG_1 chr11 115730797 115730797 C T intergenic "Llgl2(dist=13703),Recql5(dist=23112)" NA NA intergenic "Llgl2(dist=13703),Myo15b(dist=10754)" NA NA exonic ENSMUSG00000034427 synonymous SNV ENSMUST00000093911:c.C1269T:p.D423D 11qE2 NA NA chr11 115730797 AGAxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 147 4 0 164.167454 0.947368 0.02 1.187089 3 54 87 1436 60 60 0 0 CC 18.000508 60 0 1633 0 KEEP NA Llgl2 YES MNNG_1 chr11 116600358 116600358 C T intergenic "St6galnac2(dist=44384),BC018473(dist=13123)" NA NA UTR3 St6galnac1 NA NA UTR3 "ENSMUSG00000009588,ENSMUSG00000078586" NA NA 11qE2 "Score=0.955491;Name=No.13049,chr11:116626969" NA chr11 116600358 ACAxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.892756 0.899314 0.992708 60 3 1 18.62274 0.214286 0.02 -0.368146 33 9 888 238 60 60 0 0 CC 3.007617 10 0 274 0 KEEP - St6galnac2 YES MNNG_1 chr11 116627027 116627027 C T UTR3 St6galnac1 NA NA UTR3 St6galnac1 NA NA UTR3 ENSMUSG00000009588 NA NA 11qE2 "Score=0.955491;Name=No.13049,chr11:116600300" NA chr11 116627027 ACAxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.666177 0.668523 0.99649 50 0 2 7.661191 0.137931 0.02 -0.254216 25 4 688 108 60 60 0 0 CC 4.511215 15 0 409 0 KEEP - St6galnac1 YES MNNG_1 chr11 116629316 116629316 A G exonic St6galnac1 nonsynonymous SNV NM_011371:c.T727C:p.W243R exonic St6galnac1 nonsynonymous SNV uc007mme.1:c.T727C:p.W243R exonic ENSMUSG00000009588 nonsynonymous SNV ENSMUST00000009732:c.T727C:p.W243R 11qE2 "Score=0.955491;Name=No.13049,chr11:116600300" NA chr11 116629316 TCCxCTC A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0.997163 0 155 1 77 8.601974 0.086957 0.02 1.082929 63 6 1654 144 36 36 0 0 AA 9.606026 32 0 838 0 KEEP - St6galnac1 NO MNNG_1 chr11 117903373 117903373 T A intronic Dnah17 NA NA ncRNA_intronic mKIAA3028 NA NA intronic ENSMUSG00000033987 NA NA 11qE2 NA NA chr11 117903373 GTGxCCC T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 72 2 0 91.337168 1 0.02 -0.245518 0 28 0 780 0 60 0 0 TT 11.127961 37 0 1010 0 KEEP - Dnah17 NO MNNG_1 chr11 117928968 117928968 C T exonic Dnah17 nonsynonymous SNV NM_001167746:c.G7963A:p.A2655T exonic Dnahc17 nonsynonymous SNV uc007moo.2:c.G7963A:p.A2655T exonic;splicing ENSMUSG00000033987;ENSMUSG00000033987(ENSMUST00000132685:exon32:c.5009-1G>A) nonsynonymous SNV ENSMUST00000045365:c.G7963A:p.A2655T 11qE2 NA NA chr11 117928968 CTGxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999998 79 1 0 118.818295 1 0.02 -0.324395 0 37 0 1012 0 60 0 0 CC 10.227869 34 0 967 0 KEEP - Dnah17 YES MNNG_1 chr11 117962312 117962312 C T intronic Dnah17 NA NA intronic Dnahc17 NA NA intronic ENSMUSG00000033987 NA NA 11qE2 NA NA chr11 117962312 GTTxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 65 2 0 82.437949 1 0.02 -0.235851 0 27 0 697 0 60 0 0 CC 8.413294 28 0 778 0 KEEP - Dnah17 YES MNNG_1 chr11 119954142 119954142 C T intronic Enthd2 NA NA intronic 2410002I01Rik NA NA intronic ENSMUSG00000025377 NA NA 11qE2 NA NA chr11 119954142 CTGxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987804 0.987943 0.999859 88 6 0 177.576675 0.95 0.02 1.169197 3 57 87 1556 60 60 0 0 CC 5.413167 18 0 492 0 KEEP - Enthd2 YES MNNG_1 chr11 120515556 120515556 C T exonic Notum nonsynonymous SNV NM_175263:c.G1490A:p.G497E exonic Notum nonsynonymous SNV uc007mty.2:c.G965A:p.G322E exonic ENSMUSG00000042988 nonsynonymous SNV ENSMUST00000106177:c.G1490A:p.G497E 11qE2 NA NA chr11 120515556 ATCxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 314 3 0 459.740639 0.965278 0.02 2.306642 5 139 144 4029 60 60 0 0 CC 36.692046 122 0 3386 0 KEEP - Notum YES MNNG_1 chr11 120648683 120648683 C T intronic Gps1 NA NA intronic Gps1 NA NA intronic ENSMUSG00000025156 NA NA 11qE2 NA NA chr11 120648683 CTCxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161341 0.162467 0.993072 33 0 0 43.795132 1 0.02 -0.11401 0 13 0 376 0 60 0 0 CC 3.308656 11 0 306 0 KEEP + Gps1 YES MNNG_1 chr11 120835175 120835175 T G exonic Csnk1d nonsynonymous SNV NM_027874:c.A296C:p.K99T exonic Csnk1d nonsynonymous SNV uc007muz.1:c.A296C:p.K99T exonic ENSMUSG00000025162 nonsynonymous SNV ENSMUST00000018274:c.A296C:p.K99T 11qE2 NA NA chr11 120835175 AACxTCC T G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 193 1 0 41.410376 0.25 0.02 0.923713 66 22 1898 524 60 60 0 0 TT 28.560843 95 0 2617 0 KEEP - Csnk1d NO MNNG_1 chr11 20141875 20141875 C T intronic Cep68 NA NA exonic Cep68 nonsynonymous SNV uc007ida.1:c.G326A:p.G109E intronic ENSMUSG00000044066 NA NA 11qA3.1 NA NA chr11 20141875 GCTxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 57 0 0 55.398382 1 0.02 -0.166606 0 17 0 473 0 60 0 0 CC 8.723892 29 0 827 0 KEEP - Cep68 YES MNNG_1 chr11 21407137 21407137 C T ncRNA_exonic 4932414J04Rik NA NA ncRNA_exonic 4932414J04Rik NA NA ncRNA_exonic ENSMUSG00000078962 NA NA 11qA3.1 "Score=0.940735;Name=No.14079,chr17:53908170" NA chr11 21407137 GTGxATA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 183 3 0 7.484841 0.0625 0.02 0.780992 75 5 2164 132 60 57 0 0 CC 25.265037 84 0 2334 0 KEEP - 4932414J04Rik YES MNNG_1 chr11 3166286 3166286 C T exonic Drg1 nonsynonymous SNV NM_007879:c.G28A:p.E10K exonic Drg1 nonsynonymous SNV uc007hsh.1:c.G28A:p.E10K exonic ENSMUSG00000020457 nonsynonymous SNV ENSMUST00000020741:c.G28A:p.E10K 11qA1 NA NA chr11 3166286 TCTxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.548763 0.552887 0.99254 45 2 0 69.59396 0.916667 0.02 -0.219228 2 22 61 621 60 60 0 0 CC 2.707237 9 0 253 0 KEEP - Drg1 YES MNNG_1 chr11 35822151 35822151 C T exonic Tenm2 nonsynonymous SNV NM_011856:c.G7681A:p.G2561S exonic Odz2 nonsynonymous SNV uc011xtd.1:c.G7588A:p.G2530S exonic ENSMUSG00000049336 nonsynonymous SNV ENSMUST00000109310:c.G7588A:p.G2530S 11qA4 NA NA chr11 35822151 TGCxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 110 4 0 164.989311 0.980769 0.02 1.33807 1 51 29 1429 60 60 0 0 CC 13.226595 44 0 1235 0 KEEP - Tenm2 YES MNNG_1 chr11 35853167 35853167 C T intronic Tenm2 NA NA intronic Odz2 NA NA intronic ENSMUSG00000049336 NA NA 11qA4 NA NA chr11 35853167 TCCxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92651 0.92664 0.99986 69 1 0 135.847965 0.976744 0.02 -0.394263 1 42 31 1179 60 60 0 0 CC 5.714694 19 0 526 0 KEEP - Tenm2 YES MNNG_1 chr11 3898598 3898598 C T exonic Gal3st1 synonymous SNV NM_001177691:c.C801T:p.C267C exonic Gal3st1 synonymous SNV uc007huc.2:c.C801T:p.C267C exonic ENSMUSG00000049721 synonymous SNV ENSMUST00000078757:c.C801T:p.C267C 11qA1 "Score=0.916813;Name=No.14363,chr19:37308132" NA chr11 3898598 GTGxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 214 4 0 320.010499 0.971429 0.02 2.452769 3 102 88 2774 60 60 0 0 CC 24.047219 80 0 2234 0 KEEP + Gal3st1 YES MNNG_1 chr11 4037207 4037207 C T intronic Rnf215 NA NA intronic Rnf215 NA NA intronic ENSMUSG00000003581 NA NA 11qA1 NA NA chr11 4037207 TCTxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 109 0 0 149.27921 0.959184 0.02 -0.42896 2 47 57 1306 60 60 0 0 CC 12.935217 43 0 1225 0 KEEP + Rnf215 YES MNNG_1 chr11 4139699 4139699 C T exonic Osm nonsynonymous SNV NM_001013365:c.C479T:p.A160V exonic Osm nonsynonymous SNV uc007hus.2:c.C479T:p.A160V exonic ENSMUSG00000058755 nonsynonymous SNV ENSMUST00000075221:c.C479T:p.A160V 11qA1 NA NA chr11 4139699 GGGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 85 1 0 100.015385 0.970588 0.02 -0.297779 1 33 29 863 60 60 0 0 CC 10.825627 36 0 985 0 KEEP + Osm YES MNNG_1 chr11 46148589 46148589 C T exonic Itk nonsynonymous SNV NM_001281965:c.G1520A:p.G507E exonic Itk nonsynonymous SNV uc007iog.1:c.G1502A:p.G501E exonic ENSMUSG00000020395 nonsynonymous SNV ENSMUST00000020664:c.G1502A:p.G501E 11qB1.1 NA NA chr11 46148589 ATCxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 331 4 0 314.39194 1 0.02 0.969173 0 94 0 2696 0 60 0 0 CC 54.396484 181 0 5041 0 KEEP - Itk YES MNNG_1 chr11 48801139 48801139 C T exonic "Tgtp1,Tgtp2" synonymous SNV NM_001145164:c.G240A:p.G80G exonic Tgtp2 synonymous SNV uc007ipm.2:c.G240A:p.G80G exonic ENSMUSG00000078922 synonymous SNV ENSMUST00000068063:c.G240A:p.G80G 11qB1.2 "Score=0.995566;Name=No.12943,chr11:48829365" NA chr11 48801139 ATGxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 166 0 29 110.39548 0.972973 0.02 -0.332732 1 36 27 953 23 46 0 0 CC 29.468816 98 0 2671 0 KEEP - Tgtp1 YES MNNG_1 chr11 48962148 48962148 C T exonic Olfr1395 nonsynonymous SNV NM_146877:c.C388T:p.P130S exonic Olfr1395 nonsynonymous SNV uc007ips.1:c.C388T:p.P130S exonic ENSMUSG00000050763 nonsynonymous SNV ENSMUST00000059379:c.C388T:p.P130S 11qB1.2 NA NA chr11 48962148 AACxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 147 0 0 220.314162 0.958333 0.02 1.162541 3 69 89 1929 60 60 0 0 CC 17.745452 59 0 1635 0 KEEP + Olfr1395 YES MNNG_1 chr11 49141392 49141392 A G exonic Olfr1391 nonsynonymous SNV NM_146468:c.A478G:p.T160A exonic Olfr1391 nonsynonymous SNV uc007iqi.1:c.A478G:p.T160A exonic ENSMUSG00000044373 nonsynonymous SNV ENSMUST00000053387:c.A478G:p.T160A 11qB1.2 NA NA chr11 49141392 CAGxCAG A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 214 0 0 226.083018 0.958333 0.02 1.243217 3 69 82 1986 60 60 0 0 AA 36.387515 121 0 3266 0 KEEP + Olfr1391 NO MNNG_1 chr11 49988470 49988470 C T intronic 3010026O09Rik NA NA intronic 3010026O09Rik NA NA intronic ENSMUSG00000020381 NA NA 11qB1.3 NA NA chr11 49988470 CTGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 139 2 0 238.141975 0.973684 0.02 1.028821 2 74 60 2069 60 60 0 0 CC 14.42288 48 0 1330 0 KEEP + 3010026O09Rik YES MNNG_1 chr11 50071510 50071510 C T exonic Maml1 synonymous SNV NM_175334:c.G2904A:p.R968R exonic Maml1 synonymous SNV uc007isd.2:c.G2904A:p.R968R exonic ENSMUSG00000050567 synonymous SNV ENSMUST00000059458:c.G2904A:p.R968R 11qB1.3 NA NA chr11 50071510 GGTxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963771 0.963774 0.999997 87 0 0 162.787767 0.980392 0.02 1.248007 1 50 31 1411 60 60 0 0 CC 9.023756 30 0 840 0 KEEP + Maml1 YES MNNG_1 chr11 54136713 54136713 A C intronic Acsl6 NA NA intronic Acsl6 NA NA intronic ENSMUSG00000020333 NA NA 11qB1.3 NA NA chr11 54136713 TCAxCTA A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 75 1 0 92.758637 0.833333 0.02 -0.324453 6 30 166 855 60 60 0 1 AA 8.707591 29 0 773 0 KEEP + Acsl6 NO MNNG_1 chr11 54917071 54917071 C T intronic Gm2a NA NA intronic Gm2a NA NA intronic ENSMUSG00000000594 NA NA 11qB1.3 NA NA chr11 54917071 TTGxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 141 2 0 106.675239 1 0.02 -0.297992 0 34 0 905 0 60 0 0 CC 26.167151 87 0 2416 0 KEEP + Gm2a YES MNNG_1 chr11 5768009 5768009 C T intronic Aebp1 NA NA intronic Aebp1 NA NA intronic ENSMUSG00000020473 NA NA 11qA1 NA NA chr11 5768009 GCTxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 247 5 0 345.781375 0.947826 0.02 2.35607 6 109 167 3041 60 60 0 0 CC 29.17387 97 0 2784 0 KEEP + Aebp1 YES MNNG_1 chr11 58599931 58599931 C T exonic Olfr314 nonsynonymous SNV NM_001011760:c.C194T:p.S65F exonic Olfr314 nonsynonymous SNV uc007jch.2:c.C194T:p.S65F exonic ENSMUSG00000059504 nonsynonymous SNV ENSMUST00000076393:c.C194T:p.S65F 11qB1.3 NA NA chr11 58599931 TCTxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 242 7 0 313.126981 0.960784 0.02 2.478802 4 98 120 2738 60 60 0 0 CC 34.594634 115 0 3279 0 KEEP - Olfr314 YES MNNG_1 chr11 58857588 58857588 C T exonic Obscn synonymous SNV NM_001171512:c.G14034A:p.E4678E exonic Obscn synonymous SNV uc007jdb.2:c.G14028A:p.E4676E exonic ENSMUSG00000061462 synonymous SNV ENSMUST00000047441:c.G14031A:p.E4677E 11qB1.3 NA NA chr11 58857588 GCAxTCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 128 2 0 178.719265 0.95 0.02 1.1521 3 57 87 1568 60 60 0 0 CC 12.63297 42 0 1185 0 KEEP - Obscn YES MNNG_1 chr11 60564221 60564221 C T exonic Top3a nonsynonymous SNV NM_009410:c.G1138A:p.V380I exonic Top3a nonsynonymous SNV uc007jgl.1:c.G1138A:p.V380I exonic ENSMUSG00000002814 nonsynonymous SNV ENSMUST00000002891:c.G1138A:p.V380I 11qB2 NA NA chr11 60564221 CTAxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229145 0.229173 0.999879 43 3 0 47.941609 1 0.02 -0.131505 0 15 0 408 0 60 0 0 CC 6.617255 22 0 611 0 KEEP - Top3a YES MNNG_1 chr11 61176247 61176247 C A exonic Slc47a1 nonsynonymous SNV NM_026183:c.G863T:p.G288V exonic Slc47a1 nonsynonymous SNV uc007jhi.2:c.G863T:p.G288V exonic ENSMUSG00000010122 nonsynonymous SNV ENSMUST00000056789:c.G437T:p.G146V 11qB2 NA NA chr11 61176247 ATGxCAA C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 262 0 0 342.946689 0.990654 0.02 2.453086 1 106 10 2943 60 60 0 0 CC 39.700379 132 0 3647 0 KEEP - Slc47a1 NO MNNG_1 chr11 62078938 62078938 C T exonic Adora2b nonsynonymous SNV NM_007413:c.C710T:p.A237V exonic Adora2b nonsynonymous SNV uc007jio.1:c.C710T:p.A237V exonic ENSMUSG00000018500 nonsynonymous SNV ENSMUST00000018644:c.C710T:p.A237V 11qB2 NA NA chr11 62078938 TGGxTAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 168 2 0 188.828925 1 0.02 1.1691 0 58 0 1612 0 60 0 0 CC 25.856402 86 0 2416 0 KEEP + Adora2b YES MNNG_1 chr11 62152413 62152413 C T exonic Ncor1 synonymous SNV NM_001252313:c.G4920A:p.R1640R exonic Ncor1 synonymous SNV uc007jit.1:c.G1167A:p.R389R exonic ENSMUSG00000018501 synonymous SNV ENSMUST00000037575:c.G1758A:p.R586R 11qB2 NA NA chr11 62152413 TCCxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.80019 0.800245 0.999931 67 0 0 116.274352 1 0.02 -0.306918 0 35 0 996 0 60 0 0 CC 7.513951 25 0 681 0 KEEP - Ncor1 YES MNNG_1 chr11 6416291 6416291 C T exonic Myo1g nonsynonymous SNV NM_178440:c.G880A:p.V294M exonic Myo1g nonsynonymous SNV uc007hyt.2:c.G880A:p.V294M exonic ENSMUSG00000020437 nonsynonymous SNV ENSMUST00000003459:c.G880A:p.V294M 11qA1 NA NA chr11 6416291 CCAxAAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 117 0 0 139.294765 0.958333 0.02 -0.42079 2 46 58 1210 60 60 0 0 CC 16.544733 55 0 1564 0 KEEP - Myo1g YES MNNG_1 chr11 64823348 64823348 C T intronic Arhgap44 NA NA intronic Arhgap44 NA NA intronic ENSMUSG00000033389 NA NA 11qB3 NA NA chr11 64823348 CATxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.518544 0.522161 0.993072 39 0 0 78.530478 1 0.02 -0.210435 0 24 0 671 0 60 0 0 CC 3.309141 11 0 316 0 KEEP - Arhgap44 YES MNNG_1 chr11 65627934 65627934 C T UTR5 Zkscan6 NA NA UTR5 Zkscan6 NA NA UTR5 ENSMUSG00000018347 NA NA 11qB3 NA NA chr11 65627934 ACGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 111 0 0 117.718088 1 0.02 -0.324394 0 37 0 1001 0 60 0 0 CC 16.541243 55 0 1509 0 KEEP + Zkscan6 YES MNNG_1 chr11 65741187 65741187 C T exonic Dnah9 nonsynonymous SNV NM_001099633:c.G9826A:p.V3276I exonic Dnahc9 nonsynonymous SNV uc007jlg.1:c.G9826A:p.V3276I exonic ENSMUSG00000056752 nonsynonymous SNV ENSMUST00000130739:c.G274A:p.V92I 11qB3 NA NA chr11 65741187 AGAxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 87 0 0 94.575976 0.967742 0.02 -0.280587 1 30 29 822 60 60 0 0 CC 13.818816 46 0 1236 0 KEEP - Dnah9 YES MNNG_1 chr11 66904245 66904245 C T intronic Myh3 NA NA intronic Myh3 NA NA intronic ENSMUSG00000020908 NA NA 11qB3 NA NA chr11 66904245 CCAxAAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 75 0 0 100.436696 1 0.02 -0.280553 0 32 0 852 0 60 0 0 CC 10.209658 34 0 917 0 KEEP + Myh3 YES MNNG_1 chr11 68304131 68304131 C T exonic Pik3r5 synonymous SNV NM_177320:c.C640T:p.L214L exonic Pik3r5 synonymous SNV uc007jnp.1:c.C265T:p.L89L exonic ENSMUSG00000020901 synonymous SNV ENSMUST00000021283:c.C640T:p.L214L 11qB3 NA NA chr11 68304131 AAAxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976863 0.976865 0.999998 104 2 0 173.264665 1 0.02 1.21337 0 54 0 1476 0 60 0 0 CC 10.210631 34 0 922 0 KEEP + Pik3r5 YES MNNG_1 chr11 69236401 69236401 C T exonic Dnah2 synonymous SNV NM_001081330:c.G12573A:p.E4191E exonic Dnahc2 synonymous SNV uc007jqg.1:c.G12573A:p.E4191E exonic ENSMUSG00000005237 synonymous SNV ENSMUST00000035539:c.G12555A:p.E4185E 11qB3 NA NA chr11 69236401 CAAxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 119 0 0 164.446757 0.981132 0.02 1.212999 1 52 23 1418 60 60 0 0 CC 15.338252 51 0 1420 0 KEEP - Dnah2 YES MNNG_1 chr11 69292303 69292303 C T exonic Dnah2 stopgain SNV NM_001081330:c.G4848A:p.W1616X exonic Dnahc2 stopgain SNV uc007jqg.1:c.G4848A:p.W1616X exonic ENSMUSG00000005237 stopgain SNV ENSMUST00000035539:c.G4848A:p.W1616X 11qB3 NA NA chr11 69292303 CTCxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 121 4 0 110.52551 1 0.02 -0.289407 0 33 0 948 0 60 0 0 CC 19.552072 65 0 1826 0 KEEP - Dnah2 YES MNNG_1 chr11 69703089 69703089 C T intronic Acap1 NA NA intronic Acap1 NA NA intronic ENSMUSG00000001588 NA NA 11qB3 NA NA chr11 69703089 TAAxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 166 0 0 206.74957 1 0.02 1.125351 0 65 0 1758 0 60 0 0 CC 25.263469 84 0 2304 0 KEEP - Acap1 YES MNNG_1 chr11 69754623 69754623 C T UTR3 Ybx2 NA NA ncRNA_exonic Msy2 NA NA exonic ENSMUSG00000018554 nonsynonymous SNV ENSMUST00000087862:c.C485T:p.A162V 11qB3 NA NA chr11 69754623 GAGxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 174 1 0 214.771629 0.985294 0.02 1.098987 1 67 26 1851 60 60 0 0 CC 25.26672 84 0 2361 0 KEEP + Ybx2 YES MNNG_1 chr11 69844412 69844412 A C exonic Dlg4 nonsynonymous SNV NM_001109752:c.A245C:p.N82T exonic Dlg4 nonsynonymous SNV uc007jtp.2:c.A254C:p.N85T exonic ENSMUSG00000020886 nonsynonymous SNV ENSMUST00000132597:c.A191C:p.N64T 11qB3 NA NA chr11 69844412 ACAxCCC A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 83 3 0 100.853997 1 0.02 -0.280508 0 31 0 861 0 60 0 0 AA 12.029314 40 0 1081 0 KEEP + Dlg4 NO MNNG_1 chr11 70339799 70339799 C T exonic Psmb6 synonymous SNV NM_008946:c.C171T:p.S57S exonic Psmb6 synonymous SNV uc007jve.2:c.C171T:p.S57S exonic ENSMUSG00000018286 synonymous SNV ENSMUST00000018430:c.C171T:p.S57S 11qB3 NA NA chr11 70339799 GTCxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 625 6 0 600.104954 0.994536 0.02 3.776077 1 182 30 5161 60 60 0 0 CC 93.19315 310 0 8709 0 KEEP + Psmb6 YES MNNG_1 chr11 70453547 70453547 C T exonic Gp1ba synonymous SNV NM_010326:c.C636T:p.L212L exonic Gp1ba synonymous SNV uc007jvq.1:c.C636T:p.L212L exonic ENSMUSG00000050675 synonymous SNV ENSMUST00000055184:c.C636T:p.L212L 11qB3 NA NA chr11 70453547 CCTxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 115 0 0 118.552944 0.973684 0.02 -0.341452 1 37 30 1030 60 60 0 0 CC 20.154185 67 0 1907 0 KEEP + Gp1ba YES MNNG_1 chr11 72249173 72249173 C T exonic Ggt6 nonsynonymous SNV NM_027819:c.C53T:p.P18L exonic Ggt6 nonsynonymous SNV uc007jyw.1:c.C53T:p.P18L exonic ENSMUSG00000040471 nonsynonymous SNV ENSMUST00000076443:c.C53T:p.P18L 11qB4 NA NA chr11 72249173 AGCxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999997 87 0 0 122.862737 0.95 0.02 -0.350773 2 38 59 1082 60 60 0 0 CC 9.324678 31 0 876 0 KEEP + Ggt6 YES MNNG_1 chr11 73754195 73754195 G C exonic Olfr23 nonsynonymous SNV NM_010970:c.G446C:p.W149S exonic Olfr23 nonsynonymous SNV uc007kbg.1:c.G446C:p.W149S exonic ENSMUSG00000069816 nonsynonymous SNV ENSMUST00000092917:c.G446C:p.W149S 11qB4 NA NA chr11 73754195 CCTxGGC G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 234 3 0 165.374074 0.852941 0.02 1.1975 10 58 292 1501 60 60 0 0 GG 43.899346 146 0 4100 0 KEEP + Olfr23 NO MNNG_1 chr11 74979512 74979512 C T exonic Hic1 synonymous SNV NM_001098203:c.G1572A:p.Q524Q exonic Hic1 synonymous SNV uc007kdc.1:c.G1572A:p.Q524Q exonic ENSMUSG00000043099 synonymous SNV ENSMUST00000055619:c.G2052A:p.Q684Q 11qB5 NA NA chr11 74979512 GTGxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 197 2 0 299.21381 0.969388 0.02 0.836086 3 95 91 2598 60 60 0 0 CC 22.561669 75 0 2139 0 KEEP - Hic1 YES MNNG_1 chr11 76977233 76977233 C T intronic Efcab5 NA NA intronic Efcab5 NA NA intronic ENSMUSG00000050944 NA NA 11qB5 NA NA chr11 76977233 AAAxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP UNCOVERED 0.139831 0.139832 0.999995 61 0 0 38.215037 1 0.02 -0.105216 0 12 0 325 0 60 0 0 CC 13.533652 45 0 1222 0 KEEP - Efcab5 YES MNNG_1 chr11 77385137 77385137 C T exonic Taok1 stopgain SNV NM_144825:c.G627A:p.W209X exonic Taok1 stopgain SNV uc007khc.1:c.G627A:p.W209X exonic ENSMUSG00000017291 stopgain SNV ENSMUST00000017435:c.G627A:p.W209X 11qB5 NA NA chr11 77385137 AGAxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 78 0 0 53.994936 1 0.02 -0.157809 0 17 0 459 0 60 0 0 CC 13.534826 45 0 1244 0 KEEP - Taok1 YES MNNG_1 chr11 77993586 77993586 C T exonic Tlcd1 synonymous SNV NM_026708:c.C498T:p.L166L exonic Tlcd1 synonymous SNV uc007kij.1:c.C498T:p.L166L exonic ENSMUSG00000019437 synonymous SNV ENSMUST00000092879:c.C498T:p.L166L 11qB5 NA NA chr11 77993586 CCTxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 212 0 0 254.798466 0.951807 0.02 0.967366 4 79 112 2241 60 60 0 0 CC 30.978593 103 0 2892 0 KEEP + Tlcd1 YES MNNG_1 chr11 78080676 78080676 C T exonic 2610507B11Rik synonymous SNV NM_001002004:c.C1161T:p.H387H exonic 2610507B11Rik synonymous SNV uc007kir.2:c.C1161T:p.H387H exonic ENSMUSG00000010277 synonymous SNV ENSMUST00000010421:c.C1161T:p.H387H 11qB5 NA NA chr11 78080676 TCAxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 67 0 0 82.831149 0.962963 0.02 -0.236753 1 26 30 723 60 60 0 0 CC 10.228039 34 0 971 0 KEEP + 2610507B11Rik YES MNNG_1 chr11 82711001 82711001 C T intronic Fndc8 NA NA intronic Fndc8 NA NA intronic ENSMUSG00000018844 NA NA 11qC NA NA chr11 82711001 AGCxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 76 0 0 73.171288 0.958333 0.02 -0.210009 1 23 9 637 60 60 0 0 CC 11.968859 40 0 1079 0 KEEP + Fndc8 YES MNNG_1 chr11 8343937 8343937 C T splicing Tns3(NM_001083587:exon28:c.3913+1G>A) NA NA splicing "Tns3(uc007hzj.1:exon9:c.1243+1G>A,uc007hzk.1:exon28:c.3913+1G>A)" NA NA splicing ENSMUSG00000020422(ENSMUST00000020695:exon28:c.3913+1G>A) NA NA 11qA1 NA NA chr11 8343937 TGAxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 125 0 0 120.184102 0.974359 0.02 -0.341959 1 38 30 1041 60 60 0 0 CC 18.004573 63 1 1715 8 KEEP - Tns3 YES MNNG_1 chr11 85125351 85125351 C T exonic Ppm1d nonsynonymous SNV NM_016910:c.C377T:p.S126F exonic Ppm1d nonsynonymous SNV uc007krl.2:c.C377T:p.S126F exonic ENSMUSG00000020525 nonsynonymous SNV ENSMUST00000020835:c.C377T:p.S126F 11qC NA NA chr11 85125351 CGTxCGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 182 3 0 181.499788 1 0.02 1.18665 0 55 0 1553 0 60 0 0 CC 26.76607 89 0 2483 0 KEEP + Ppm1d YES MNNG_1 chr11 86114264 86114264 G C exonic Med13 nonsynonymous SNV NM_001080931:c.C2773G:p.H925D exonic Med13 nonsynonymous SNV uc007ksk.1:c.C2773G:p.H925D exonic ENSMUSG00000034297 nonsynonymous SNV ENSMUST00000043624:c.C2773G:p.H925D 11qC NA NA chr11 86114264 AATxGCT G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 0.999999 57 0 0 13.963375 0.375 0.02 -0.149054 10 6 285 157 60 60 0 0 GG 10.829209 36 0 1019 0 KEEP + Med13 NO MNNG_1 chr11 86960610 86960610 C T intronic Trim37 NA NA intronic Trim37 NA NA intronic ENSMUSG00000018548 NA NA 11qC NA NA chr11 86960610 GGTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 44 2 0 35.549097 0.916667 0.02 -0.105242 1 11 30 318 60 60 0 0 CC 8.422028 28 0 786 0 KEEP + Trim37 YES MNNG_1 chr11 87554075 87554075 C T intronic Supt4a NA NA intronic Supt4h1 NA NA exonic ENSMUSG00000020485 nonsynonymous SNV ENSMUST00000152700:c.C245T:p.A82V 11qC NA NA chr11 87554075 AAGxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 81 0 0 77.231675 1 0.02 -0.219211 0 24 0 658 0 60 0 0 CC 14.717814 49 0 1345 0 KEEP + Supt4a YES MNNG_1 chr11 87609851 87609851 T C exonic Mpo synonymous SNV NM_010824:c.T720C:p.T240T exonic Mpo synonymous SNV uc011ycc.1:c.T720C:p.T240T exonic ENSMUSG00000009350 synonymous SNV ENSMUST00000020779:c.T720C:p.T240T 11qC NA NA chr11 87609851 GACxCCA T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 256 0 0 228.903479 0.737864 0.02 2.653071 27 76 772 2184 60 60 0 0 TT 27.360551 91 0 2494 0 KEEP + Mpo NO MNNG_1 chr11 87888213 87888213 C T exonic Vezf1 nonsynonymous SNV NM_016686:c.C778T:p.P260S exonic Vezf1 nonsynonymous SNV uc007kvf.1:c.C778T:p.P260S exonic ENSMUSG00000018377 nonsynonymous SNV ENSMUST00000143052:c.C214T:p.P72S 11qC NA NA chr11 87888213 AGAxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 146 0 0 79.369828 0.896552 0.02 -0.254056 3 26 86 712 60 60 0 0 CC 25.554693 85 0 2351 0 KEEP + Vezf1 YES MNNG_1 chr11 94509501 94509501 C T exonic Eme1 nonsynonymous SNV NM_177752:c.G946A:p.V316I exonic Eme1 nonsynonymous SNV uc007kzf.1:c.G946A:p.V316I exonic ENSMUSG00000039055 nonsynonymous SNV ENSMUST00000039949:c.G946A:p.V316I 11qD NA NA chr11 94509501 GGAxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 194 0 0 193.626036 0.983871 0.02 1.151671 1 61 31 1668 29 60 0 0 CC 31.255682 104 0 2845 0 KEEP - Eme1 YES MNNG_1 chr11 9477220 9477220 C T exonic Abca13 synonymous SNV NM_178259:c.C13629T:p.I4543I exonic Abca13 synonymous SNV uc007iaa.1:c.C13629T:p.I4543I exonic ENSMUSG00000004668 synonymous SNV ENSMUST00000042740:c.C13629T:p.I4543I 11qA1 NA NA chr11 9477220 CATxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05402 0.054137 0.997832 31 0 0 21.225959 0.875 0.02 -0.070146 1 7 30 192 60 60 0 0 CC 4.813617 16 0 466 0 KEEP + Abca13 YES MNNG_1 chr11 94832000 94832000 C T exonic Sgca stopgain SNV NM_009161:c.G732A:p.W244X exonic Sgca stopgain SNV uc007kzo.2:c.G732A:p.W244X exonic ENSMUSG00000001508 stopgain SNV ENSMUST00000100551:c.G732A:p.W244X 11qD NA NA chr11 94832000 GCAxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 51 2 0 52.723113 1 0.02 -0.149079 0 16 0 451 0 60 0 0 CC 7.820269 26 0 721 0 KEEP - Sgca YES MNNG_1 chr11 95611298 95611298 C T exonic Zfp652 nonsynonymous SNV NM_201609:c.C734T:p.T245I exonic Zfp652 nonsynonymous SNV uc007laq.1:c.C734T:p.T245I exonic ENSMUSG00000075595 nonsynonymous SNV ENSMUST00000091565:c.C734T:p.T245I 11qD NA NA chr11 95611298 TGAxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162444 0.162467 0.99986 35 0 0 41.491469 1 0.02 -0.113985 0 13 0 353 0 60 0 0 CC 5.714701 19 0 525 0 KEEP + Zfp652 YES MNNG_1 chr11 96883912 96883912 C T UTR3 Sp6 NA NA ncRNA_exonic AM295304 NA NA ncRNA_exonic ENSMUSG00000087067 NA NA 11qD NA NA chr11 96883912 CCCxATG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 185 0 0 140.856046 0.9375 0.02 -0.42081 3 45 90 1243 70 70 0 0 CC 30.972293 106 1 2744 7 KEEP + Sp6 YES MNNG_1 chr11 97549756 97549756 C T exonic Cisd3 nonsynonymous SNV NM_001085500:c.C409T:p.L137F exonic Cisd3 nonsynonymous SNV uc007lek.2:c.C409T:p.L137F exonic ENSMUSG00000078695 nonsynonymous SNV ENSMUST00000107583:c.C409T:p.L137F 11qD NA NA chr11 97549756 CCAxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 30 0 0 38.003184 1 0.02 -0.105134 0 12 0 323 0 60 0 0 CC 4.512281 15 0 428 0 KEEP + Cisd3 YES MNNG_1 chr11 98753947 98753947 C T exonic Wipf2 nonsynonymous SNV NM_197940:c.C884T:p.A295V exonic Wipf2 nonsynonymous SNV uc007lht.2:c.C884T:p.A295V exonic ENSMUSG00000038013 nonsynonymous SNV ENSMUST00000037480:c.C884T:p.A295V 11qD NA NA chr11 98753947 TTGxACC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987942 0.987943 0.999999 109 2 0 158.816039 0.932203 0.02 1.071657 4 55 109 1390 60 60 0 0 CC 10.825471 36 0 985 0 KEEP + Wipf2 YES MNNG_1 chr11 99283040 99283040 C T exonic Krt12 nonsynonymous SNV NM_010661:c.G491A:p.G164E exonic Krt12 nonsynonymous SNV uc007lis.1:c.G491A:p.G164E exonic ENSMUSG00000020912 nonsynonymous SNV ENSMUST00000017741:c.G491A:p.G164E 11qD NA NA chr11 99283040 GACxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 118 0 0 120.212407 0.948718 0.02 -0.350788 2 37 57 1060 60 60 0 0 CC 18.324747 61 0 1657 0 KEEP - Krt12 YES MNNG_1 chr12 101129915 101129915 G A exonic Tdp1 synonymous SNV NM_028354:c.G522A:p.G174G exonic Tdp1 synonymous SNV uc007osf.2:c.G522A:p.G174G exonic ENSMUSG00000021177 synonymous SNV ENSMUST00000021594:c.G522A:p.G174G 12qE NA NA chr12 101129915 GGGxATT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 49 0 0 23.685929 0.473684 0.02 -0.166564 10 9 279 251 60 60 0 0 GG 7.219049 24 0 673 0 KEEP + Tdp1 YES MNNG_1 chr12 105368779 105368779 G A exonic Serpina3b synonymous SNV NM_173024:c.G108A:p.Q36Q exonic Serpina3b synonymous SNV uc007owu.1:c.G108A:p.Q36Q exonic ENSMUSG00000066364 synonymous SNV ENSMUST00000085052:c.G108A:p.Q36Q 12qE NA NA chr12 105368779 CCAxGAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 282 2 0 54.140206 0.465116 0.02 -0.377103 23 20 666 575 60 60 0 0 GG 58.358061 194 0 5519 0 KEEP + Serpina3b YES MNNG_1 chr12 105371116 105371116 G A exonic Serpina3b nonsynonymous SNV NM_173024:c.G679A:p.G227R exonic Serpina3b nonsynonymous SNV uc007owu.1:c.G679A:p.G227R exonic ENSMUSG00000066364 nonsynonymous SNV ENSMUST00000085052:c.G679A:p.G227R 12qE NA NA chr12 105371116 ATGxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 70 0 0 20.098625 0.583333 0.02 -0.105239 5 7 143 203 60 60 0 0 GG 15.640289 52 0 1449 0 KEEP + Serpina3b YES MNNG_1 chr12 105489779 105489779 G A ncRNA_exonic Serpina3h NA NA exonic Serpina3h synonymous SNV uc007oxb.2:c.G129A:p.E43E ncRNA_exonic ENSMUSG00000041449 NA NA 12qE NA NA chr12 105489779 TGAxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.973965 0.973965 1 201 3 0 83.393508 0.555556 0.02 1.319951 24 30 711 852 60 60 0 0 GG 37.255322 124 0 3497 0 KEEP + Serpina3h YES MNNG_1 chr12 105943385 105943385 G A exonic Dicer1 synonymous SNV NM_148948:c.C2835T:p.T945T exonic Dicer1 synonymous SNV uc011yri.1:c.C1386T:p.T462T exonic ENSMUSG00000041415 synonymous SNV ENSMUST00000170804:c.C1542T:p.T514T 12qE NA NA chr12 105943385 TGGxGTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043759 0.043787 0.999366 25 0 0 18.513097 0.857143 0.02 -0.061385 1 6 29 169 60 60 0 0 GG 5.113323 17 0 473 0 KEEP - Dicer1 YES MNNG_1 chr12 106951812 106951812 G A exonic Ak7 nonsynonymous SNV NM_030187:c.G394A:p.A132T exonic Ak7 nonsynonymous SNV uc007oyt.1:c.G394A:p.A132T exonic ENSMUSG00000041323 nonsynonymous SNV ENSMUST00000040876:c.G394A:p.A132T 12qE NA NA chr12 106951812 TGGxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 65 0 0 21.722138 0.45 0.02 -0.183777 11 9 302 234 60 60 0 0 GG 10.509676 35 0 934 0 KEEP + Ak7 YES MNNG_1 chr12 109751250 109751250 G A exonic Eml1 stopgain SNV NM_001043335:c.G1071A:p.W357X exonic Eml1 stopgain SNV uc007ozt.1:c.G978A:p.W326X exonic ENSMUSG00000058070 stopgain SNV ENSMUST00000054955:c.G978A:p.W326X 12qF1 NA NA chr12 109751250 TTGxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 296 4 0 94.077811 0.411111 0.02 0.88854 53 37 1508 1029 60 60 0 0 GG 49.883557 166 0 4510 0 KEEP + Eml1 YES MNNG_1 chr12 110065061 110065061 G A exonic Slc25a29 nonsynonymous SNV NM_181328:c.C800T:p.A267V exonic Slc25a29 nonsynonymous SNV uc007pad.1:c.C800T:p.A267V exonic ENSMUSG00000021265 nonsynonymous SNV ENSMUST00000021693:c.C800T:p.A267V 12qF1 NA NA chr12 110065061 GTGxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 98 0 0 51.51679 0.425532 0.02 -0.420948 27 20 791 559 60 60 0 0 GG 11.129277 37 0 1033 0 KEEP - Slc25a29 YES MNNG_1 chr12 110824274 110824274 G A upstream;downstream "Mir540,Mir665;Mir337" NA NA upstream;downstream "Mir540,Mir665;Mir337" NA NA upstream;downstream "ENSMUSG00000072900,ENSMUSG00000076313;ENSMUSG00000065526" NA NA 12qF1 NA NA chr12 110824274 GTGxGAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899217 0.899314 0.999892 67 0 0 49.832346 0.475 0.02 -0.368103 21 19 595 528 60 60 0 0 GG 6.917163 23 0 635 0 KEEP NA Mir540 YES MNNG_1 chr12 112278175 112278175 G A UTR5 Rcor1 NA NA UTR5 Rcor1 NA NA exonic ENSMUSG00000037896 nonsynonymous SNV ENSMUST00000116388:c.G274A:p.G92S 12qF1 NA NA chr12 112278175 GGTxGCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 132 0 0 29.030563 0.375 0.02 -0.280561 20 12 573 325 60 60 0 0 GG 24.348354 81 0 2271 0 KEEP + Rcor1 YES MNNG_1 chr12 112920809 112920809 G A exonic Trmt61a nonsynonymous SNV NM_177374:c.G602A:p.G201E exonic Trmt61a nonsynonymous SNV uc007pdq.1:c.G602A:p.G201E exonic ENSMUSG00000060950 nonsynonymous SNV ENSMUST00000084947:c.G602A:p.G201E 12qF1 NA NA chr12 112920809 GTGxGCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 167 2 0 73.622556 0.405797 0.02 1.17971 41 28 1195 805 60 60 0 0 GG 23.45752 78 0 2156 0 KEEP + Trmt61a YES MNNG_1 chr12 113044244 113044244 G A exonic Klc1 nonsynonymous SNV NM_001025360:c.G1807A:p.V603M exonic Klc1 nonsynonymous SNV uc007pdw.1:c.G1783A:p.V595M exonic ENSMUSG00000021288 nonsynonymous SNV ENSMUST00000134578:c.G485A:p.C162Y 12qF1 NA NA chr12 113044244 TGTxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 98 0 0 9.87038 0.185185 0.02 -0.245296 22 5 645 131 60 60 0 0 GG 15.619224 52 0 1407 0 KEEP + Klc1 YES MNNG_1 chr12 113838384 113838384 G A exonic Inf2 synonymous SNV NM_198411:c.G171A:p.L57L exonic Inf2 synonymous SNV uc007pes.1:c.G171A:p.L57L exonic ENSMUSG00000037679 synonymous SNV ENSMUST00000039111:c.G171A:p.L57L 12qF1 NA NA chr12 113838384 CCTxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 106 4 0 85.911525 0.581818 0.02 1.302527 23 32 671 869 60 60 0 0 GG 11.730418 39 0 1096 0 KEEP + Inf2 YES MNNG_1 chr12 114023421 114023421 T C intergenic "Pld4(dist=16224),BC022687(dist=23765)" NA NA exonic Ahnak2 nonsynonymous SNV uc007pff.1:c.A1016G:p.D339G exonic ENSMUSG00000072812 nonsynonymous SNV ENSMUST00000124526:c.A1016G:p.D339G 12qF1 NA NA chr12 114023421 CTGxCTT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 351 9 0 113.263908 0.4375 0.02 1.041552 54 42 1505 1218 60 60 0 0 TT 61.929384 206 0 5639 0 KEEP - Pld4 NO MNNG_1 chr12 114176856 114176856 G A intronic Nudt14 NA NA intronic Nudt14 NA NA intronic ENSMUSG00000002804 NA NA 12qF1 NA NA chr12 114176856 TCAxAGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 70 0 0 40.227082 0.517241 0.02 -0.271839 14 15 414 418 60 60 0 0 GG 8.324935 28 0 728 0 KEEP - Nudt14 YES MNNG_1 chr12 114826534 114826534 G A intergenic "Adam6a(dist=41909),NONE(dist=NONE)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076634 synonymous SNV ENSMUST00000103443:c.C294T:p.F98F 12qF1 "Score=0.959251;Name=No.26247,chr12:114921620" NA chr12 114826534 AAAxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 492 7 55 14.48949 0.086022 0.02 2.461004 85 8 2461 225 60 60 0 0 GG 91.435835 304 0 8717 0 KEEP - Adam6a YES MNNG_1 chr12 115947156 115947156 G A intergenic "Adam6a(dist=1162531),Zfp386(dist=1338779)" NA NA ncRNA_intronic abParts NA NA exonic ENSMUSG00000076696 synonymous SNV ENSMUST00000103505:c.C51T:p.H17H 12qF2 "Score=0.94022;Name=No.26278,chr12:116081274" NA chr12 115947156 AGAxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 284 8 41 12.523293 0.384615 0.02 -0.333254 8 5 227 139 29 29 0 0 GG 59.823498 199 0 5498 0 KEEP - Adam6a YES MNNG_1 chr12 116082158 116082158 G A intergenic "Adam6a(dist=1297533),Zfp386(dist=1203777)" NA NA ncRNA_exonic abParts NA NA upstream ENSMUSG00000078971 NA NA 12qF2 "Score=0.94022;Name=No.26278,chr12:115914359" NA chr12 116082158 AGAxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 607 47 60 29.359476 0.153061 0.02 2.294299 83 15 2384 404 60 43 0 0 GG 113.345325 377 0 10513 0 KEEP - Adam6a YES MNNG_1 chr12 117559616 117559616 G A exonic Esyt2 nonsynonymous SNV NM_028731:c.G524A:p.G175D exonic Esyt2 nonsynonymous SNV uc007pho.1:c.G524A:p.G175D exonic ENSMUSG00000021171 nonsynonymous SNV ENSMUST00000100986:c.G524A:p.G175D 12qF2 NA NA chr12 117559616 ATGxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 64 0 0 11.619851 0.8 0.02 -0.04384 1 4 27 108 60 60 0 0 GG 14.738027 49 0 1358 0 KEEP + Esyt2 YES MNNG_1 chr12 119345083 119345083 G A exonic Dnah11 nonsynonymous SNV NM_010060:c.C4459T:p.L1487F exonic Dnahc11 nonsynonymous SNV uc007pie.1:c.C4459T:p.L1487F exonic ENSMUSG00000018581 nonsynonymous SNV ENSMUST00000084806:c.C4459T:p.L1487F 12qF2 NA NA chr12 119345083 GAAxACT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162465 0.162467 0.999988 42 0 0 19.341517 0.538462 0.02 -0.114003 6 7 173 199 60 60 0 0 GG 8.1221 27 0 770 0 KEEP - Dnah11 YES MNNG_1 chr12 14157503 14157503 G A exonic Fam84a nonsynonymous SNV NM_029007:c.C28T:p.H10Y exonic Fam84a nonsynonymous SNV uc007nbn.1:c.C28T:p.H10Y exonic ENSMUSG00000020607 nonsynonymous SNV ENSMUST00000020926:c.C28T:p.H10Y 12qA1.1 NA NA chr12 14157503 GGTxGGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 107 1 0 65.715383 0.521739 0.02 -0.403407 22 24 641 681 60 60 0 0 GG 15.61322 52 0 1414 0 KEEP - Fam84a YES MNNG_1 chr12 20879989 20879989 C T intergenic "1700030C10Rik(dist=58349),Asap2(dist=237628)" NA NA intronic Gm4983 NA NA ncRNA_exonic ENSMUSG00000085642 NA NA 12qA1.2 "Score=0.941201;Name=No.23453,chr12:20929933" NA chr12 20879989 GAAxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 76 0 3 10.022193 0.444444 0.02 -0.087684 5 4 142 108 70 60 0 0 CC 15.037589 50 0 1376 0 KEEP + 1700030C10Rik YES MNNG_1 chr12 29258059 29258059 C T exonic Allc nonsynonymous SNV NM_053156:c.G73A:p.E25K exonic Allc nonsynonymous SNV uc007nfp.2:c.G73A:p.E25K exonic ENSMUSG00000020636 nonsynonymous SNV ENSMUST00000020965:c.G73A:p.E25K 12qA2 NA NA chr12 29258059 ACTxAGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 191 0 0 58.549604 0.511628 0.02 -0.377092 21 22 619 610 60 60 0 0 CC 33.393017 111 0 3199 0 KEEP - Allc YES MNNG_1 chr12 30880422 30880422 G A exonic Sntg2 nonsynonymous SNV NM_172951:c.C1469T:p.T490I exonic Sntg2 nonsynonymous SNV uc007ngq.2:c.C614T:p.T205I exonic ENSMUSG00000020672 nonsynonymous SNV ENSMUST00000021004:c.C1469T:p.T490I 12qA2 NA NA chr12 30880422 TTGxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 140 1 0 24.244853 0.357143 0.02 -0.245493 18 10 502 274 60 60 0 0 GG 24.64827 82 0 2225 0 KEEP - Sntg2 YES MNNG_1 chr12 34642867 34642867 C T exonic Twist1 nonsynonymous SNV NM_011658:c.C25T:p.P9S exonic Twist1 nonsynonymous SNV uc007niw.1:c.C25T:p.P9S exonic ENSMUSG00000035799 nonsynonymous SNV ENSMUST00000049089:c.C25T:p.P9S 12qA3 NA NA chr12 34642867 TCGxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024022 0.024074 0.997832 27 2 0 8.469261 0.6 0.02 -0.043845 2 3 55 85 60 60 0 0 CC 4.812372 16 0 442 0 KEEP + Twist1 YES MNNG_1 chr12 4089137 4089137 C T exonic Dnajc27 synonymous SNV NM_153082:c.C174T:p.V58V exonic Dnajc27 synonymous SNV uc007mxi.2:c.C174T:p.V58V exonic ENSMUSG00000020657 synonymous SNV ENSMUST00000020986:c.C174T:p.V58V 12qA1.1 NA NA chr12 4089137 GGTxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999999 57 1 0 12.844798 0.416667 0.02 -0.105234 7 5 204 140 60 60 0 0 CC 10.522203 35 0 971 0 KEEP + Dnajc27 YES MNNG_1 chr12 41376062 41376062 G A exonic Dock4 synonymous SNV NM_172803:c.G687A:p.E229E exonic "Dock4,mKIAA0716" synonymous SNV uc007nle.1:c.G687A:p.E229E exonic ENSMUSG00000035954 synonymous SNV ENSMUST00000037488:c.G687A:p.E229E 12qB1 NA NA chr12 41376062 AGAxAAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 54 0 0 24.286265 0.529412 0.02 -0.149084 8 9 235 251 60 60 0 0 GG 9.012716 30 0 825 0 KEEP + Dock4 YES MNNG_1 chr12 41555569 41555569 G A intronic Dock4 NA NA intronic Dock4 NA NA intronic ENSMUSG00000035954 NA NA 12qB1 NA NA chr12 41555569 CAGxAAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120431 0.120436 0.999957 41 0 0 20.306124 0.636364 0.02 -0.096473 4 7 120 201 60 60 0 0 GG 7.815832 26 0 730 0 KEEP + Dock4 YES MNNG_1 chr12 42179706 42179706 G A exonic Lrrn3 nonsynonymous SNV NM_001271709:c.C1198T:p.P400S exonic Lrrn3 nonsynonymous SNV uc007nln.1:c.C1198T:p.P400S exonic ENSMUSG00000036295 nonsynonymous SNV ENSMUST00000043884:c.C1198T:p.P400S 12qB1 NA NA chr12 42179706 CAGxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.38738 0.387407 0.999931 52 2 0 23.815681 0.45 0.02 -0.175385 11 9 312 255 60 60 0 0 GG 7.502687 25 0 668 0 KEEP + Lrrn3 YES MNNG_1 chr12 52466512 52466512 G A exonic G2e3 synonymous SNV NM_001015099:c.G1278A:p.G426G exonic G2e3 synonymous SNV uc007nml.2:c.G1278A:p.G426G exonic ENSMUSG00000035293 synonymous SNV ENSMUST00000054308:c.G1278A:p.G426G 12qC1 NA NA chr12 52466512 AGGxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999998 51 0 0 19.417011 0.875 0.02 -0.070079 1 7 29 174 60 60 0 0 GG 10.223527 34 0 926 0 KEEP + G2e3 YES MNNG_1 chr12 52694625 52694625 G A exonic Coch synonymous SNV NM_007728:c.G15A:p.R5R exonic Coch synonymous SNV uc007nms.2:c.G15A:p.R5R exonic ENSMUSG00000020953 synonymous SNV ENSMUST00000164782:c.G15A:p.R5R 12qC1 NA NA chr12 52694625 CAGxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 161 4 0 88.179203 0.465753 0.02 1.055482 39 34 1131 939 60 60 0 0 GG 17.137685 57 0 1558 0 KEEP + Coch YES MNNG_1 chr12 52694767 52694767 C T exonic Coch nonsynonymous SNV NM_007728:c.C77T:p.A26V exonic Coch nonsynonymous SNV uc007nms.2:c.C77T:p.A26V exonic ENSMUSG00000020953 nonsynonymous SNV ENSMUST00000164782:c.C77T:p.A26V 12qC1 NA NA chr12 52694767 GCGxCGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.580884 0.58293 0.99649 45 1 0 31.55039 0.538462 0.02 -0.225196 12 14 354 329 60 60 0 0 CC 4.20956 14 0 378 0 KEEP + Coch YES MNNG_1 chr12 53060051 53060051 C T exonic Heatr5a nonsynonymous SNV NM_177171:c.G127A:p.E43K exonic Heatr5a nonsynonymous SNV uc007nnb.1:c.G127A:p.E43K exonic ENSMUSG00000035181 nonsynonymous SNV ENSMUST00000040583:c.G127A:p.E43K 12qC1 NA NA chr12 53060051 CCTxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.194952 0.196312 0.993072 32 0 0 26.028064 0.642857 0.02 -0.122782 5 9 150 257 60 60 0 0 CC 3.309229 11 0 317 0 KEEP - Heatr5a YES MNNG_1 chr12 54241620 54241620 G A exonic Akap6 nonsynonymous SNV NM_198111:c.G4829A:p.S1610N exonic Akap6 nonsynonymous SNV uc007nnm.1:c.G4829A:p.S1610N exonic ENSMUSG00000061603 nonsynonymous SNV ENSMUST00000095737:c.G4829A:p.S1610N 12qC1 NA NA chr12 54241620 ACAxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.38739 0.387407 0.999957 53 0 0 17.608608 0.368421 0.02 -0.175398 12 7 352 197 60 60 0 0 GG 5.44734 25 1 699 19 KEEP + Akap6 YES MNNG_1 chr12 55853079 55853079 G A exonic Snx6 synonymous SNV NM_026998:c.C930T:p.L310L exonic Snx6 synonymous SNV uc007nnv.1:c.C930T:p.L310L exonic ENSMUSG00000005656 synonymous SNV ENSMUST00000005798:c.C930T:p.L310L 12qC1 NA NA chr12 55853079 ATAxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999998 44 0 0 15.409323 0.833333 0.02 -0.052619 1 5 30 142 60 60 0 0 GG 9.92621 33 0 934 0 KEEP - Snx6 YES MNNG_1 chr12 56154361 56154361 G A exonic 2700097O09Rik nonsynonymous SNV NM_028314:c.C625T:p.L209F exonic 2700097O09Rik nonsynonymous SNV uc007nod.1:c.C625T:p.L209F exonic ENSMUSG00000062198 nonsynonymous SNV ENSMUST00000021406:c.C625T:p.L209F 12qC1 NA NA chr12 56154361 GAAxGGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054133 0.054137 0.999931 40 0 0 7.932658 0.375 0.02 -0.070165 5 3 148 88 60 60 0 0 GG 7.514943 25 0 701 0 KEEP - 2700097O09Rik YES MNNG_1 chr12 60195394 60195394 C T intergenic "Pnn(dist=20390),Mia2(dist=1393)" NA NA intergenic "Pnn(dist=20390),Mia2(dist=1393)" NA NA exonic ENSMUSG00000060566 nonsynonymous SNV ENSMUST00000080223:c.G131A:p.G44E 12qC1 NA NA chr12 60195394 ATTxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 451 3 8 122.875631 0.48913 0.02 0.888376 47 45 1384 1291 60 50 0 0 CC 84.626239 289 1 8168 21 KEEP NA Pnn YES MNNG_1 chr12 70285676 70285676 C T exonic Mgat2 synonymous SNV NM_146035:c.C36T:p.I12I exonic Mgat2 synonymous SNV uc011ymy.1:c.C36T:p.I12I exonic ENSMUSG00000043998 synonymous SNV ENSMUST00000060579:c.C36T:p.I12I 12qC2 NA NA chr12 70285676 AATxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 132 0 0 43.198249 0.404762 0.02 -0.377038 25 17 729 474 60 60 0 0 CC 20.154283 67 0 1902 0 KEEP - Mgat2 YES MNNG_1 chr12 71998411 71998411 C T exonic Frmd6 synonymous SNV NM_028127:c.C1575T:p.S525S exonic Frmd6 synonymous SNV uc007ntx.1:c.C1485T:p.S495S exonic ENSMUSG00000048285 synonymous SNV ENSMUST00000061386:c.C1485T:p.S495S 12qC3 NA NA chr12 71998411 CTCxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 146 0 0 71.044706 0.5 0.02 1.328727 26 26 763 743 60 60 0 0 CC 21.352842 71 0 1978 0 KEEP + Frmd6 YES MNNG_1 chr12 73046225 73046225 C T exonic Daam1 nonsynonymous SNV NM_026102:c.C829T:p.L277F exonic Daam1 nonsynonymous SNV uc007nuw.1:c.C829T:p.L277F exonic ENSMUSG00000034574 nonsynonymous SNV ENSMUST00000045448:c.C829T:p.L277F 12qC3 NA NA chr12 73046225 AGTxTCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 59 0 0 9.991867 0.333333 0.02 -0.105211 8 4 229 114 60 60 0 0 CC 11.431418 38 0 1089 0 KEEP + Daam1 YES MNNG_1 chr12 73509342 73509342 C T exonic Rtn1 nonsynonymous SNV NM_153457:c.G197A:p.G66D exonic Rtn1 nonsynonymous SNV uc007nvk.1:c.G197A:p.G66D exonic ENSMUSG00000021087 nonsynonymous SNV ENSMUST00000078505:c.G197A:p.G66D 12qC3 NA NA chr12 73509342 GGGxCGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 95 2 0 60.3516 0.511628 0.02 -0.377118 21 22 624 628 60 60 0 0 CC 10.52494 35 0 955 0 KEEP - Rtn1 YES MNNG_1 chr12 77134708 77134708 G A exonic Syne2 nonsynonymous SNV NM_001005510:c.G14425A:p.E4809K exonic Syne2 nonsynonymous SNV uc007nxr.1:c.G310A:p.E104K exonic ENSMUSG00000063450 nonsynonymous SNV ENSMUST00000085280:c.G208A:p.E70K 12qC3 NA NA chr12 77134708 CTGxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.934492 0.934492 1 156 1 0 60.450566 0.488889 0.02 -0.403433 23 22 682 635 60 60 0 0 GG 22.25974 74 0 2097 0 KEEP + Syne2 YES MNNG_1 chr12 77528968 77528968 G A exonic Ppp1r36 synonymous SNV NM_001163103:c.G336A:p.K112K exonic Gm70 synonymous SNV uc011yob.1:c.G336A:p.K112K exonic ENSMUSG00000052221 synonymous SNV ENSMUST00000063977:c.G336A:p.K112K 12qC3 NA NA chr12 77528968 CAAxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 129 0 0 59.465168 0.442308 0.02 1.239203 29 23 851 640 60 60 0 0 GG 19.55276 65 0 1843 0 KEEP + Ppp1r36 YES MNNG_1 chr12 77901533 77901533 G A intronic Rab15 NA NA intronic Rab15 NA NA intronic "ENSMUSG00000021062,ENSMUSG00000033373" NA NA 12qC3 NA NA chr12 77901533 GGAxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162445 0.162467 0.999863 36 0 0 30.61771 0.769231 0.02 -0.114014 3 10 90 289 60 60 0 0 GG 6.016309 20 0 568 0 KEEP - Rab15 YES MNNG_1 chr12 80151379 80151379 C T exonic Plekhh1 synonymous SNV NM_181073:c.C313T:p.L105L exonic Plekhh1 synonymous SNV uc007nzr.2:c.C313T:p.L105L exonic ENSMUSG00000060716 synonymous SNV ENSMUST00000039928:c.C313T:p.L105L 12qC3 NA NA chr12 80151379 CAGxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760877 0.760887 0.999988 72 0 0 37.761877 0.454545 0.02 -0.289213 18 15 533 405 60 60 0 0 CC 8.120253 27 0 764 0 KEEP + Plekhh1 YES MNNG_1 chr12 80358386 80358386 G A intronic Zfyve26 NA NA intronic Zfyve26 NA NA intronic ENSMUSG00000066440 NA NA 12qC3 NA NA chr12 80358386 GAGxGCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800159 0.800245 0.999892 66 2 0 45.775444 0.5 0.02 -0.306854 17 17 471 479 60 60 0 0 GG 5.685522 22 1 604 8 KEEP - Zfyve26 YES MNNG_1 chr12 80374650 80374650 G A exonic Zfyve26 synonymous SNV NM_001008550:c.C3006T:p.D1002D exonic Zfyve26 synonymous SNV uc007oae.1:c.C3006T:p.D1002D exonic ENSMUSG00000066440 synonymous SNV ENSMUST00000021547:c.C3006T:p.D1002D 12qC3 NA NA chr12 80374650 CTGxTCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 90 0 0 19.842797 0.444444 0.02 -0.157824 10 8 288 214 60 60 0 0 GG 14.722459 49 0 1340 0 KEEP - Zfyve26 YES MNNG_1 chr12 81823310 81823310 G A exonic Plekhd1 synonymous SNV NM_001177503:c.G1356A:p.K452K exonic 3830431G21Rik synonymous SNV uc007obg.2:c.G111A:p.K37K exonic ENSMUSG00000066438 synonymous SNV ENSMUST00000140770:c.G1356A:p.K452K 12qD1 NA NA chr12 81823310 GAAxCCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.384723 0.387407 0.993072 38 0 0 26.254037 0.5 0.02 -0.175241 10 10 284 275 60 60 0 0 GG 3.309313 11 0 319 0 KEEP + Plekhd1 YES MNNG_1 chr12 82315091 82315091 G A exonic Slc8a3 nonsynonymous SNV NM_001167920:c.C1850T:p.A617V exonic Slc8a3 nonsynonymous SNV uc007obw.2:c.C1850T:p.A617V exonic ENSMUSG00000079055 nonsynonymous SNV ENSMUST00000085238:c.C1850T:p.A617V 12qD1 NA NA chr12 82315091 AGGxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 149 2 0 46.789433 0.695652 0.02 -0.201707 7 16 208 453 60 60 0 0 GG 29.443188 98 0 2660 0 KEEP - Slc8a3 YES MNNG_1 chr12 82661867 82661867 G A exonic Adam21 nonsynonymous SNV NM_020330:c.C107T:p.T36I exonic Adam21 nonsynonymous SNV uc007ock.1:c.C107T:p.T36I exonic ENSMUSG00000008438 nonsynonymous SNV ENSMUST00000008582:c.C107T:p.T36I 12qD1 NA NA chr12 82661867 CCAxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 76 0 0 22.982499 0.473684 0.02 -0.166615 10 9 294 244 60 60 0 0 GG 12.633302 42 0 1175 0 KEEP - Adam21 YES MNNG_1 chr12 86817052 86817052 G A exonic Fos nonsynonymous SNV NM_010234:c.G787A:p.E263K exonic Fos nonsynonymous SNV uc007oha.1:c.G787A:p.E263K exonic ENSMUSG00000021250 nonsynonymous SNV ENSMUST00000021674:c.G787A:p.E263K 12qD2 NA NA chr12 86817052 GTGxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.998695 0.998696 1 149 1 0 89.92158 0.447368 0.02 1.028749 42 34 1225 964 60 60 0 0 GG 15.641704 52 0 1468 0 KEEP + Fos YES MNNG_1 chr12 87160399 87160399 G A intronic 0610007P14Rik NA NA intronic 0610007P14Rik NA NA intronic ENSMUSG00000021252 NA NA 12qD2 NA NA chr12 87160399 ACGxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 90 2 0 43.796956 0.5 0.02 -0.280648 16 16 478 458 60 60 0 0 GG 14.136844 47 0 1312 0 KEEP - 0610007P14Rik YES MNNG_1 chr12 8720330 8720330 A G exonic Pum2 nonsynonymous SNV NM_001160219:c.A680G:p.D227G exonic Pum2 nonsynonymous SNV uc007mzu.2:c.A680G:p.D227G exonic ENSMUSG00000020594 nonsynonymous SNV ENSMUST00000020915:c.A680G:p.D227G 12qA1.1 NA NA chr12 8720330 TGGxCCA A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 97 2 0 20.299084 0.583333 0.02 -0.105238 5 7 140 205 60 60 0 0 AA 22.553996 75 0 2049 0 KEEP + Pum2 NO MNNG_1 chr12 8720381 8720381 C T exonic Pum2 nonsynonymous SNV NM_001160219:c.C731T:p.P244L exonic Pum2 nonsynonymous SNV uc007mzu.2:c.C731T:p.P244L exonic ENSMUSG00000020594 nonsynonymous SNV ENSMUST00000020915:c.C731T:p.P244L 12qA1.1 NA NA chr12 8720381 TACxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 67 2 0 16.009894 0.428571 0.02 -0.122777 8 6 228 173 60 60 0 0 CC 13.536231 45 0 1266 0 KEEP + Pum2 YES MNNG_1 chr12 88057874 88057874 G A exonic Angel1 nonsynonymous SNV NM_144524:c.C1601T:p.T534I exonic Angel1 nonsynonymous SNV uc011ypj.1:c.C1601T:p.T534I exonic ENSMUSG00000021257 nonsynonymous SNV ENSMUST00000021682:c.C1601T:p.T534I 12qD2 NA NA chr12 88057874 TTAxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 74 0 0 33.39131 0.631579 0.02 -0.166579 7 12 192 331 60 60 0 0 GG 11.731981 39 0 1116 0 KEEP - Angel1 YES MNNG_1 chr12 8883138 8883138 C T intergenic "Sdc1(dist=82645),Laptm4a(dist=44975)" NA NA UTR3 AK084679 NA NA ncRNA_exonic ENSMUSG00000042976 NA NA 12qA1.1 NA NA chr12 8883138 GTAxAGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 112 0 0 80.531816 0.596154 0.02 1.230578 21 31 605 810 60 60 0 0 CC 14.438291 48 0 1350 0 KEEP - Sdc1 YES MNNG_1 chr12 89266583 89266583 C T intergenic "Gm2042(dist=67457),Gm21319(dist=53582)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266583 GAGxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 88 0 0 8.869457 0.190476 0.02 -0.184178 17 4 501 114 60 60 0 0 CC 17.744175 59 0 1628 0 KEEP - Gm2042 YES MNNG_1 chr13 101382069 101382069 G A exonic Marveld2 synonymous SNV NM_001038602:c.C456T:p.A152A exonic Marveld2 synonymous SNV uc007rra.2:c.C456T:p.A152A exonic ENSMUSG00000021636 synonymous SNV ENSMUST00000022137:c.C456T:p.A152A 13qD1 NA NA chr13 101382069 GTGxGCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.734547 0.739671 0.993072 44 0 0 40.047909 0.46875 0.02 -0.28062 17 15 482 425 60 60 0 0 GG 3.304065 11 0 291 0 KEEP - Marveld2 YES MNNG_1 chr13 113288910 113288910 G A intronic Il6st NA NA intronic Il6st NA NA intronic ENSMUSG00000021756 NA NA 13qD2.2 NA NA chr13 113288910 ACAxATA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138942 0.139832 0.993634 26 0 0 19.598783 0.583333 0.02 -0.105225 5 7 139 198 60 60 0 0 GG 3.610123 12 0 347 0 KEEP + Il6st YES MNNG_1 chr13 115608519 115608519 T C exonic Mocs2 synonymous SNV NM_013826:c.T6C:p.V2V exonic Mocs2 synonymous SNV uc007rxu.2:c.T6C:p.V2V exonic ENSMUSG00000015536 synonymous SNV ENSMUST00000165022:c.T6C:p.V2V 13qD2.2 NA NA chr13 115608519 GGTxCCT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 499 9 0 205.119144 0.420765 0.02 4.028505 106 77 2986 2225 60 60 0 0 TT 65.161912 217 0 5935 0 KEEP + Mocs2 NO MNNG_1 chr13 115610997 115610997 G A intronic Mocs2 NA NA intronic Mocs2 NA NA intronic ENSMUSG00000015536 NA NA 13qD2.2 NA NA chr13 115610997 GCCxTTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.640941 0.641347 0.999366 46 0 0 39.255451 0.535714 0.02 -0.245384 13 15 313 405 60 60 0 0 GG 5.101717 17 0 384 0 KEEP + Mocs2 YES MNNG_1 chr13 117700169 117700169 T C intronic Parp8 NA NA intronic Parp8 NA NA intronic ENSMUSG00000021725 NA NA 13qD2.3 NA NA chr13 117700169 TCAxATT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 41 0 0 7.532762 0.375 0.02 -0.070147 5 3 135 84 60 60 0 0 TT 8.7185 29 0 769 0 KEEP - Parp8 NO MNNG_1 chr13 11780160 11780160 G A exonic Ryr2 nonsynonymous SNV NM_023868:c.C8708T:p.S2903F exonic Ryr2 nonsynonymous SNV uc007pld.1:c.C8708T:p.S2903F exonic ENSMUSG00000021313 nonsynonymous SNV ENSMUST00000021750:c.C8708T:p.S2903F 13qA1 NA NA chr13 11780160 CTGxATA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.38738 0.387407 0.999931 49 0 0 17.916199 0.35 0.02 -0.175394 13 7 373 202 60 60 0 0 GG 7.520332 25 0 709 0 KEEP - Ryr2 YES MNNG_1 chr13 11814026 11814026 G A exonic Ryr2 synonymous SNV NM_023868:c.C6781T:p.L2261L exonic Ryr2 synonymous SNV uc007pld.1:c.C6781T:p.L2261L exonic ENSMUSG00000021313 synonymous SNV ENSMUST00000021750:c.C6781T:p.L2261L 13qA1 NA NA chr13 11814026 CCAxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 158 2 0 34.869126 0.333333 0.02 -0.377093 28 14 815 398 60 60 0 0 GG 24.054416 80 0 2279 0 KEEP - Ryr2 YES MNNG_1 chr13 13832907 13832907 G A intronic Lyst NA NA intronic Lyst NA NA intronic ENSMUSG00000019726 NA NA 13qA1 NA NA chr13 13832907 AAGxGTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036686 0.036766 0.997832 23 0 0 8.625139 0.5 0.02 -0.052618 3 3 83 90 60 60 0 0 GG 4.812839 16 0 449 0 KEEP + Lyst YES MNNG_1 chr13 21272495 21272495 G A exonic Trim27 stopgain SNV NM_009054:c.G132A:p.W44X exonic Trim27 stopgain SNV uc007ppy.1:c.G132A:p.W44X exonic ENSMUSG00000021326 stopgain SNV ENSMUST00000021761:c.G132A:p.W44X 13qA3.1 NA NA chr13 21272495 CTGxGGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.19521 0.196312 0.994391 29 0 0 12.945034 0.416667 0.02 -0.122768 7 5 203 141 60 60 0 0 GG 3.908788 13 0 350 0 KEEP + Trim27 YES MNNG_1 chr13 21514799 21514799 G A exonic Pgbd1 nonsynonymous SNV NM_001012311:c.C982T:p.P328S exonic Pgbd1 nonsynonymous SNV uc011ywq.1:c.C982T:p.P328S exonic ENSMUSG00000055313 nonsynonymous SNV ENSMUST00000122872:c.C982T:p.P328S 13qA3.1 NA NA chr13 21514799 GAGxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 77 0 0 33.875371 0.6 0.02 -0.175402 8 12 241 340 60 60 0 0 GG 13.836203 46 0 1283 0 KEEP - Pgbd1 YES MNNG_1 chr13 21560148 21560148 G A exonic Nkapl nonsynonymous SNV NM_025719:c.C163T:p.R55W exonic Nkapl nonsynonymous SNV uc007pqm.2:c.C163T:p.R55W exonic ENSMUSG00000059395 nonsynonymous SNV ENSMUST00000068235:c.C163T:p.R55W 13qA3.1 NA NA chr13 21560148 CCCxCGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.486885 0.490544 0.99254 36 0 0 28.734365 0.478261 0.02 -0.201618 12 11 321 304 60 60 0 0 GG 2.706275 9 0 242 0 KEEP - Nkapl YES MNNG_1 chr13 21808046 21808046 G A upstream "Hist1h2ai,Hist1h2bl" NA NA upstream "Hist1h2ai,Hist1h2bl" NA NA upstream "ENSMUSG00000069314,ENSMUSG00000071516" NA NA 13qA3.1 NA NA chr13 21808046 AAGxATA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 50 1 0 27.999438 0.392857 0.02 -0.245546 17 11 491 309 60 60 0 0 GG 6.016331 20 0 569 0 KEEP NA Hist1h2ai YES MNNG_1 chr13 22566773 22566773 T C exonic Vmn1r201 nonsynonymous SNV NM_134221:c.T287C:p.I96T exonic Vmn1r201 nonsynonymous SNV uc007psr.1:c.T287C:p.I96T exonic ENSMUSG00000069290 nonsynonymous SNV ENSMUST00000091730:c.T287C:p.I96T 13qA3.1 NA NA chr13 22566773 CCAxCTG T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 249 2 0 48.883413 0.377358 0.02 1.428979 33 20 884 546 60 60 0 1 TT 45.654305 152 0 4118 0 KEEP + Vmn1r201 NO MNNG_1 chr13 22593591 22593591 G A exonic Vmn1r202 nonsynonymous SNV NM_134224:c.C524T:p.S175F exonic Vmn1r202 nonsynonymous SNV uc007pss.1:c.C524T:p.S175F exonic ENSMUSG00000063269 nonsynonymous SNV ENSMUST00000078642:c.C524T:p.S175F 13qA3.1 NA NA chr13 22593591 CTGxATG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 307 0 0 78.66794 0.373494 0.02 0.958539 52 31 1530 877 60 60 0 0 GG 54.439039 181 0 5101 0 KEEP - Vmn1r202 YES MNNG_1 chr13 25212379 25212379 G A exonic Dcdc2a synonymous SNV NM_001195617:c.G1065A:p.K355K exonic Dcdc2a synonymous SNV uc007pwv.1:c.G1065A:p.K355K exonic ENSMUSG00000035910 synonymous SNV ENSMUST00000036932:c.G1065A:p.K355K 13qA3.1 NA NA chr13 25212379 AAAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 43 0 0 15.469473 0.352941 0.02 -0.14908 11 6 316 174 60 60 0 0 GG 6.31597 21 0 585 0 KEEP + Dcdc2a YES MNNG_1 chr13 30844632 30844632 G T exonic Irf4 nonsynonymous SNV NM_013674:c.G476T:p.G159V exonic Irf4 nonsynonymous SNV uc007pyz.1:c.G476T:p.G159V exonic ENSMUSG00000021356 nonsynonymous SNV ENSMUST00000021784:c.G476T:p.G159V 13qA3.2 NA NA chr13 30844632 ATGxCTC G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 469 4 0 140.126206 0.365385 0.02 3.691921 99 57 2844 1574 60 60 0 0 GG 72.993897 243 0 6587 0 KEEP + Irf4 NO MNNG_1 chr13 3569520 3569520 C T intronic BC016423 NA NA intronic BC016423 NA NA intronic ENSMUSG00000033799 NA NA 13qA1 NA NA chr13 3569520 ATAxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 72 0 0 35.517965 0.857143 0.02 -0.122713 2 12 59 323 60 60 0 0 CC 13.234134 44 0 1221 0 KEEP - BC016423 YES MNNG_1 chr13 38033381 38033381 G A intronic Rreb1 NA NA intronic Rreb1 NA NA intronic ENSMUSG00000039087 NA NA 13qA3.3 NA NA chr13 38033381 CCAxATA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 56 0 0 9.381214 0.235294 0.02 -0.149097 13 4 383 115 60 60 0 0 GG 9.326036 31 0 895 0 KEEP + Rreb1 YES MNNG_1 chr13 43467324 43467324 G A exonic Sirt5 stopgain SNV NM_178848:c.G239A:p.W80X exonic Sirt5 stopgain SNV uc007qga.1:c.G239A:p.W80X exonic ENSMUSG00000054021 stopgain SNV ENSMUST00000066804:c.G239A:p.W80X 13qA4 NA NA chr13 43467324 AATxGCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099717 0.099721 0.999957 39 0 0 12.45148 0.5 0.02 -0.087453 5 5 145 131 60 60 0 0 GG 7.813498 26 0 716 0 KEEP + Sirt5 YES MNNG_1 chr13 48586729 48586729 G A exonic Zfp169 nonsynonymous SNV NM_001164575:c.C290T:p.S97F exonic Zfp169 nonsynonymous SNV uc007qif.2:c.C290T:p.S97F exonic ENSMUSG00000050954 nonsynonymous SNV ENSMUST00000050188:c.C251T:p.S84F 13qA5 NA NA chr13 48586729 GGGxACG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 259 1 0 95.66271 0.445783 0.02 0.967445 46 37 1355 1028 60 60 0 0 GG 36.989285 123 0 3448 0 KEEP - Zfp169 YES MNNG_1 chr13 48678585 48678585 G A exonic Ptpdc1 nonsynonymous SNV NM_207232:c.C1894T:p.P632S exonic Ptpdc1 nonsynonymous SNV uc007qii.1:c.C1894T:p.P632S exonic ENSMUSG00000038042 nonsynonymous SNV ENSMUST00000035824:c.C1894T:p.P632S 13qA5 NA NA chr13 48678585 AAGxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 69 2 6 18.122743 0.35 0.02 -0.175149 13 7 355 204 60 60 0 0 GG 12.612451 42 0 1144 0 KEEP - Ptpdc1 YES MNNG_1 chr13 49556899 49556899 G A intronic Ippk NA NA intronic Ippk NA NA intronic ENSMUSG00000021385 NA NA 13qA5 NA NA chr13 49556899 CTTxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 73 2 0 31.882755 0.433333 0.02 -0.280598 17 13 504 346 60 60 0 0 GG 9.32562 31 0 887 0 KEEP + Ippk YES MNNG_1 chr13 49756497 49756497 G A exonic Nol8 synonymous SNV NM_001271397:c.G711A:p.K237K exonic Nol8 synonymous SNV uc007qju.1:c.G711A:p.K237K exonic ENSMUSG00000021392 synonymous SNV ENSMUST00000021824:c.G711A:p.K237K 13qA5 NA NA chr13 49756497 AAAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 70 0 0 29.958147 0.458333 0.02 -0.210482 13 11 376 319 60 60 0 0 GG 11.43012 38 0 1076 0 KEEP + Nol8 YES MNNG_1 chr13 51798698 51798698 G A exonic Sema4d synonymous SNV NM_013660:c.C1866T:p.Y622Y exonic Sema4d synonymous SNV uc007qmn.1:c.C1860T:p.Y620Y exonic ENSMUSG00000021451 synonymous SNV ENSMUST00000110039:c.C1866T:p.Y622Y 13qA5 NA NA chr13 51798698 CTGxTAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 164 0 0 80.565361 0.358696 0.02 0.870982 59 33 1664 909 60 60 0 0 GG 14.134735 47 0 1282 0 KEEP - Sema4d YES MNNG_1 chr13 54784542 54784542 C T exonic Rnf44 synonymous SNV NM_001146025:c.G504A:p.G168G exonic Rnf44 synonymous SNV uc007qot.2:c.G258A:p.G86G exonic ENSMUSG00000034928 synonymous SNV ENSMUST00000037422:c.G258A:p.G86G 13qB1 NA NA chr13 54784542 GGGxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.961999 0.967425 0.994391 71 0 0 69.468421 0.509804 0.02 1.239628 25 26 717 724 60 60 0 0 CC 3.910006 13 0 360 0 KEEP - Rnf44 YES MNNG_1 chr13 54840399 54840399 C T exonic Gprin1 synonymous SNV NM_012014:c.G1422A:p.K474K exonic Gprin1 synonymous SNV uc007qpb.1:c.G1422A:p.K474K exonic ENSMUSG00000069227 synonymous SNV ENSMUST00000135343:c.G1422A:p.K474K 13qB1 NA NA chr13 54840399 GGTxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 109 0 0 59.076426 0.403509 0.02 1.195431 34 23 967 648 60 60 0 0 CC 13.535117 45 0 1271 0 KEEP - Gprin1 YES MNNG_1 chr13 55504354 55504354 C T exonic Slc34a1 nonsynonymous SNV NM_011392:c.C733T:p.H245Y exonic Slc34a1 nonsynonymous SNV uc007qqs.1:c.C733T:p.H245Y exonic ENSMUSG00000021490 nonsynonymous SNV ENSMUST00000057167:c.C733T:p.H245Y 13qB1 NA NA chr13 55504354 CTAxACC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989541 0.989542 0.999998 109 2 0 82.483475 0.542373 0.02 1.160564 27 32 752 849 60 60 0 0 CC 10.226165 34 0 943 0 KEEP + Slc34a1 YES MNNG_1 chr13 58455911 58455911 G A intronic Kif27 NA NA intronic Kif27 NA NA intronic ENSMUSG00000060176 NA NA 13qB1 NA NA chr13 58455911 AGAxTTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 63 3 0 15.179308 0.4 0.02 -0.140247 9 6 256 167 60 60 0 0 GG 11.731337 39 0 1111 0 KEEP - Kif27 YES MNNG_1 chr13 5861020 5861020 G A exonic Klf6 nonsynonymous SNV NM_011803:c.G136A:p.E46K exonic Klf6 nonsynonymous SNV uc007pjw.1:c.G136A:p.E46K exonic ENSMUSG00000000078 nonsynonymous SNV ENSMUST00000000080:c.G136A:p.E46K 13qA1 NA NA chr13 5861020 CAGxAAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 278 1 0 84.623663 0.354167 0.02 0.853554 62 34 1795 955 60 60 0 0 GG 41.139263 137 0 3822 0 KEEP + Klf6 YES MNNG_1 chr13 59827438 59827438 G A exonic Spata31d1d nonsynonymous SNV NM_177711:c.C3643T:p.P1215S exonic 4932411G14Rik nonsynonymous SNV uc007qvb.1:c.C3643T:p.P1215S exonic ENSMUSG00000043986 nonsynonymous SNV ENSMUST00000052978:c.C3643T:p.P1215S 13qB2 NA NA chr13 59827438 AGGxGGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 161 0 0 71.389892 0.442623 0.02 1.24982 34 27 984 767 60 60 0 0 GG 24.055871 80 0 2223 0 KEEP - Spata31d1d YES MNNG_1 chr13 61668901 61668901 G A exonic Cts3 synonymous SNV NM_026906:c.C477T:p.I159I exonic Cts3 synonymous SNV uc007qwl.2:c.C477T:p.I159I exonic ENSMUSG00000074870 synonymous SNV ENSMUST00000054702:c.C477T:p.I159I 13qB3 NA NA chr13 61668901 AGGxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 117 0 0 20.253392 0.363636 0.02 -0.23679 14 8 411 227 60 60 0 0 GG 22.559775 75 0 2117 0 KEEP - Cts3 YES MNNG_1 chr13 63134487 63134487 C T exonic 2010111I01Rik nonsynonymous SNV NM_028079:c.C902T:p.A301V exonic 2010111I01Rik nonsynonymous SNV uc007qxi.1:c.C902T:p.A301V exonic ENSMUSG00000021458 nonsynonymous SNV ENSMUST00000021911:c.C902T:p.A301V 13qB3 NA NA chr13 63134487 CAGxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 85 0 0 42.759 0.551724 0.02 -0.25425 13 16 380 438 60 60 0 0 CC 13.837615 46 0 1308 0 KEEP + 2010111I01Rik YES MNNG_1 chr13 63613031 63613031 C T exonic Ptch1 nonsynonymous SNV NM_008957:c.G4115A:p.G1372E exonic Ptch1 nonsynonymous SNV uc007qxv.1:c.G4115A:p.G1372E exonic ENSMUSG00000021466 nonsynonymous SNV ENSMUST00000169233:c.G683A:p.G228E 13qB3 NA NA chr13 63613031 GGTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 131 0 0 98.996287 0.625 0.02 1.195357 21 35 616 984 60 60 0 0 CC 18.343063 61 0 1700 0 KEEP - Ptch1 YES MNNG_1 chr13 63942707 63942707 C T intronic Ercc6l2 NA NA intronic "0610007P08Rik,Rad26l" NA NA intronic ENSMUSG00000021470 NA NA 13qB3 NA NA chr13 63942707 CTCxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 48 0 0 22.462302 0.571429 0.02 -0.122778 6 8 175 228 60 60 0 0 CC 6.908823 23 0 626 0 KEEP + Ercc6l2 YES MNNG_1 chr13 64889245 64889245 G A exonic Cntnap3 nonsynonymous SNV NM_001081129:c.C1111T:p.P371S exonic Cntnap3 nonsynonymous SNV uc007qyz.1:c.C1111T:p.P371S exonic ENSMUSG00000033063 nonsynonymous SNV ENSMUST00000091554:c.C1111T:p.P371S 13qB3 NA NA chr13 64889245 GTGxTTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 84 0 0 28.73128 0.478261 0.02 -0.201685 12 11 336 304 60 60 0 0 GG 13.522182 45 0 1218 0 KEEP - Cntnap3 YES MNNG_1 chr13 65296733 65296733 G A exonic Nlrp4f synonymous SNV NM_175290:c.C405T:p.N135N exonic Nlrp4f synonymous SNV uc007qzf.1:c.C405T:p.N135N exonic ENSMUSG00000032999 synonymous SNV ENSMUST00000037372:c.C405T:p.N135N 13qB3 "Score=0.903195;Name=No.40125,chr9_random:127976" NA chr13 65296733 AAGxTTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 79 0 0 25.630262 0.434783 0.02 -0.201698 13 10 377 277 60 60 0 0 GG 14.733518 49 0 1330 0 KEEP - Nlrp4f YES MNNG_1 chr13 66786450 66786450 C T intergenic "2410141K09Rik(dist=244396),Uqcrb(dist=215107)" NA NA ncRNA_intronic AK049212 NA NA exonic ENSMUSG00000078996 nonsynonymous SNV ENSMUST00000095681:c.G286A:p.G96R 13qB3 "Score=0.980557;Name=No.34397,chr13:66930705" NA chr13 66786450 CTCxACC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 183 2 19 20.922497 0.222222 0.02 -0.394631 35 10 1029 265 60 37 0 0 CC 30.373612 101 0 2875 0 KEEP - 2410141K09Rik YES MNNG_1 chr13 67407288 67407288 C T exonic Zfp457 nonsynonymous SNV NM_001003666:c.G4A:p.E2K exonic Zfp457 nonsynonymous SNV uc007ran.1:c.G4A:p.E2K exonic ENSMUSG00000055341 nonsynonymous SNV ENSMUST00000049705:c.G4A:p.E2K 13qB3 NA NA chr13 67407288 CCTxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999999 63 1 0 32.783041 0.785714 0.02 -0.122762 3 11 87 307 60 60 0 0 CC 10.828331 36 0 1012 0 KEEP - Zfp457 YES MNNG_1 chr13 69733796 69733796 C T exonic Srd5a1 nonsynonymous SNV NM_175283:c.G548A:p.R183K exonic Srd5a1 nonsynonymous SNV uc007rck.1:c.G548A:p.R183K exonic ENSMUSG00000021594 nonsynonymous SNV ENSMUST00000091514:c.G548A:p.R183K 13qC1 NA NA chr13 69733796 CCCxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 118 0 4 23.602365 0.375 0.02 -0.219107 15 9 426 262 60 60 0 0 CC 21.943976 73 0 2055 0 KEEP - Srd5a1 YES MNNG_1 chr13 73802993 73802993 G A exonic Slc6a18 nonsynonymous SNV NM_001040692:c.C1648T:p.P550S exonic Slc6a18 nonsynonymous SNV uc007rds.2:c.C1648T:p.P550S exonic ENSMUSG00000021612 nonsynonymous SNV ENSMUST00000022105:c.C1648T:p.P550S 13qC1 NA NA chr13 73802993 GGGxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053793 0.054137 0.993634 23 2 0 11.131045 0.571429 0.02 -0.070159 3 4 89 113 60 60 0 0 GG 3.609076 12 0 329 0 KEEP - Slc6a18 YES MNNG_1 chr13 81662695 81662695 G A exonic Gpr98 nonsynonymous SNV NM_054053:c.C6779T:p.T2260I exonic Gpr98 nonsynonymous SNV uc007rho.1:c.C770T:p.T257I exonic ENSMUSG00000069170 nonsynonymous SNV ENSMUST00000109565:c.C4619T:p.T1540I 13qC3 NA NA chr13 81662695 AGTxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 79 0 0 13.406939 0.285714 0.02 -0.184137 15 6 416 160 60 60 0 0 GG 15.63897 52 0 1418 0 KEEP - Gpr98 YES MNNG_1 chr13 81695940 81695940 C T intronic Gpr98 NA NA intronic Gpr98 NA NA intronic ENSMUSG00000069170 NA NA 13qC3 NA NA chr13 81695940 CCGxTTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 119 0 0 64.913991 0.648649 0.02 -0.324369 13 24 371 639 60 60 0 0 CC 18.34835 61 0 1708 0 KEEP - Gpr98 YES MNNG_1 chr13 81717125 81717125 A C exonic Gpr98 synonymous SNV NM_054053:c.T1779G:p.V593V exonic Gpr98 synonymous SNV uc007rhq.1:c.T1245G:p.V415V exonic ENSMUSG00000069170 synonymous SNV ENSMUST00000095585:c.T1779G:p.V593V 13qC3 NA NA chr13 81717125 AGAxACT A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999998 47 0 0 10.622825 0.444444 0.02 -0.078926 5 4 141 114 60 60 0 0 AA 10.226287 34 0 944 0 KEEP - Gpr98 NO MNNG_1 chr13 89865310 89865310 C T intronic Vcan NA NA intronic Vcan NA NA intronic ENSMUSG00000021614 NA NA 13qC3 NA NA chr13 89865310 ATGxCGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 59 0 0 40.517065 0.777778 0.02 -0.157735 4 14 119 380 60 60 0 0 CC 10.221223 34 0 940 0 KEEP - Vcan YES MNNG_1 chr13 91162182 91162182 G A exonic Atg10 nonsynonymous SNV NM_025770:c.C431T:p.T144I exonic Atg10 nonsynonymous SNV uc007rjr.1:c.C431T:p.T144I exonic ENSMUSG00000021619 nonsynonymous SNV ENSMUST00000022119:c.C431T:p.T144I 13qC3 NA NA chr13 91162182 TGGxTGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 237 3 0 110.939536 0.415094 0.02 2.460951 62 44 1783 1212 60 60 0 0 GG 27.972488 93 0 2580 0 KEEP - Atg10 YES MNNG_1 chr13 93864357 93864357 G A exonic Cmya5 nonsynonymous SNV NM_023821:c.C4177T:p.P1393S exonic Cmya5 nonsynonymous SNV uc007rkw.2:c.C3961T:p.P1321S exonic ENSMUSG00000047419 nonsynonymous SNV ENSMUST00000062122:c.C4177T:p.P1393S 13qC3 NA NA chr13 93864357 GTGxTTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 53 0 0 22.563327 0.428571 0.02 -0.184152 12 9 345 245 60 60 0 0 GG 9.017696 30 0 823 0 KEEP - Cmya5 YES MNNG_1 chr13 93868116 93868116 G A exonic Cmya5 nonsynonymous SNV NM_023821:c.C418T:p.R140C exonic Cmya5 nonsynonymous SNV uc007rkw.2:c.C202T:p.R68C exonic ENSMUSG00000047419 nonsynonymous SNV ENSMUST00000062122:c.C418T:p.R140C 13qC3 NA NA chr13 93868116 CACxCTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999999 66 0 0 25.050389 0.384615 0.02 -0.227877 16 10 424 278 60 60 0 0 GG 10.519624 35 0 896 0 KEEP - Cmya5 YES MNNG_1 chr13 94063739 94063739 G A intergenic "Papd4(dist=101501),Homer1(dist=10711)" NA NA intergenic "Papd4(dist=101501),Homer1(dist=10711)" NA NA intergenic "ENSMUSG00000042167(dist=101501),ENSMUSG00000007617(dist=9973)" NA NA 13qC3 "Score=0.95915;Name=No.35486,chr15:12504571" NA chr13 94063739 ATGxTGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 398 4 0 74.189871 0.340909 0.02 0.914735 58 30 1689 844 60 60 0 0 GG 73.91513 246 0 6752 0 KEEP NA Papd4 YES MNNG_1 chr13 94397297 94397297 G A exonic Bhmt nonsynonymous SNV NM_016668:c.C190T:p.L64F exonic Bhmt nonsynonymous SNV uc007rli.1:c.C190T:p.L64F exonic ENSMUSG00000074768 nonsynonymous SNV ENSMUST00000099309:c.C190T:p.L64F 13qC3 NA NA chr13 94397297 TGAxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 367 1 4 87.298389 0.330189 0.02 2.648702 71 35 2071 998 60 60 0 0 GG 59.854976 199 0 5675 0 KEEP + Bhmt YES MNNG_1 chr13 94641830 94641830 G A intronic Arsb NA NA exonic Arsb nonsynonymous SNV uc011zcv.1:c.G1294A:p.A432T exonic ENSMUSG00000042082 nonsynonymous SNV ENSMUST00000109482:c.G1210A:p.A404T 13qC3 NA NA chr13 94641830 TCAxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 102 0 0 13.143948 0.206897 0.02 -0.263111 23 6 687 167 60 60 0 0 GG 17.446892 58 0 1657 0 KEEP + Arsb YES MNNG_1 chr13 95335571 95335571 G A exonic Ap3b1 nonsynonymous SNV NM_009680:c.G3176A:p.R1059K exonic Ap3b1 nonsynonymous SNV uc007rlv.2:c.G3176A:p.R1059K exonic ENSMUSG00000021686 nonsynonymous SNV ENSMUST00000022196:c.G3176A:p.R1059K 13qD1 NA NA chr13 95335571 CTAxAAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 100 0 0 30.938767 0.387097 0.02 -0.280629 19 12 552 342 60 60 0 0 GG 16.842163 56 0 1596 0 KEEP + Ap3b1 YES MNNG_1 chr13 96248620 96248620 G A upstream S100z NA NA upstream S100z NA NA upstream ENSMUSG00000021679 NA NA 13qD1 NA NA chr13 96248620 GGTxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 89 1 0 58.943995 0.5 0.02 -0.38586 22 22 645 617 60 60 0 0 GG 9.024123 30 0 846 0 KEEP NA S100z YES MNNG_1 chr13 97199748 97199748 G A exonic Ankdd1b nonsynonymous SNV NM_001042714:c.C899T:p.T300I exonic Ankdd1b nonsynonymous SNV uc007rmy.1:c.C899T:p.T300I exonic ENSMUSG00000047117 nonsynonymous SNV ENSMUST00000055607:c.C899T:p.T300I 13qD1 NA NA chr13 97199748 TCAxTGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 199 0 0 54.38425 0.319444 0.02 1.055091 49 23 1422 630 60 60 0 0 GG 24.064933 80 0 2276 0 KEEP - Ankdd1b YES MNNG_1 chr14 106506562 106506562 C T exonic Trim52 nonsynonymous SNV NM_198601:c.C436T:p.R146C exonic Trim52 nonsynonymous SNV uc007uxz.1:c.C436T:p.R146C exonic ENSMUSG00000022113 nonsynonymous SNV ENSMUST00000022708:c.C436T:p.R146C 14qE2.3 NA NA chr14 106506562 TACxGCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 256 5 0 170.353907 0.548673 0.02 2.587765 51 62 1411 1746 60 60 0 0 CC 27.633196 92 0 2334 0 KEEP + Trim52 YES MNNG_1 chr14 13176537 13176537 G A exonic Fezf2 synonymous SNV NM_080433:c.C867T:p.R289R exonic Fezf2 synonymous SNV uc007sft.2:c.C867T:p.R289R exonic ENSMUSG00000021743 synonymous SNV ENSMUST00000022262:c.C867T:p.R289R 14qA1 NA NA chr14 13176537 GTGxCGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94174 0.941741 0.999999 91 3 0 29.462495 0.288889 0.02 -0.411742 32 13 916 350 60 60 0 0 GG 10.781263 36 0 961 0 KEEP - Fezf2 YES MNNG_1 chr14 21216405 21216405 C T exonic Ttc18 synonymous SNV NM_001163639:c.G3063A:p.R1021R exonic Ttc18 synonymous SNV uc011zgr.1:c.G3063A:p.R1021R exonic ENSMUSG00000039543 synonymous SNV ENSMUST00000022348:c.G3063A:p.R1021R 14qA3 NA NA chr14 21216405 TACxCGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 279 2 0 79.500642 0.352273 0.02 1.013331 57 31 1655 895 60 60 0 0 CC 39.083773 130 0 3601 0 KEEP - Ttc18 YES MNNG_1 chr14 21380664 21380664 C T exonic Usp54 nonsynonymous SNV NM_030180:c.G3305A:p.R1102K exonic Usp54 nonsynonymous SNV uc007skb.1:c.G3305A:p.R1102K exonic ENSMUSG00000034235 nonsynonymous SNV ENSMUST00000022356:c.G3305A:p.R1102K 14qA3 NA NA chr14 21380664 CTTxTAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 111 1 0 54.837652 0.488372 0.02 -0.376687 22 21 651 578 60 60 0 0 CC 15.342769 51 0 1472 0 KEEP + Usp54 YES MNNG_1 chr14 22444138 22444138 C T intronic Kat6b NA NA exonic Myst4 nonsynonymous SNV uc007slk.1:c.C1148T:p.T383I exonic ENSMUSG00000021767 nonsynonymous SNV ENSMUST00000069648:c.C1148T:p.T383I 14qA3 NA NA chr14 22444138 GTAxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.4905 0.490544 0.999909 56 0 0 38.186123 0.608696 0.02 -0.201679 9 14 264 382 60 60 0 0 CC 7.218816 24 0 667 0 KEEP + Kat6b YES MNNG_1 chr14 26588255 26588255 C T exonic Zcchc24 nonsynonymous SNV NM_001101433:c.G88A:p.D30N exonic Zcchc24 nonsynonymous SNV uc011zho.1:c.G88A:p.D30N exonic ENSMUSG00000055538 nonsynonymous SNV ENSMUST00000069180:c.G88A:p.D30N 14qA3 NA NA chr14 26588255 TGTxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 138 0 0 11.567117 0.277778 0.02 -0.157856 13 5 383 138 60 60 0 0 CC 26.419794 88 0 2447 0 KEEP - Zcchc24 YES MNNG_1 chr14 28299771 28299771 C T exonic Ccdc66 nonsynonymous SNV NM_177111:c.G2179A:p.E727K exonic Ccdc66 nonsynonymous SNV uc011zhw.1:c.G1711A:p.E571K exonic ENSMUSG00000046753 nonsynonymous SNV ENSMUST00000112290:c.G1711A:p.E571K 14qA3 NA NA chr14 28299771 GCTxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 87 2 0 25.444798 0.357143 0.02 -0.24557 18 10 535 286 60 60 0 0 CC 15.339505 51 0 1437 0 KEEP - Ccdc66 YES MNNG_1 chr14 30845919 30845919 C T intronic Chdh NA NA intronic Chdh NA NA intronic ENSMUSG00000015970 NA NA 14qB NA NA chr14 30845919 GCTxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.942364 0.948402 0.993634 69 0 0 61.525316 0.489362 0.02 -0.420665 24 23 703 647 60 60 0 0 CC 3.609875 12 0 342 0 KEEP + Chdh YES MNNG_1 chr14 32179418 32179418 T G exonic Capn7 nonsynonymous SNV NM_009796:c.T1853G:p.V618G exonic Capn7 nonsynonymous SNV uc007sxm.1:c.T1853G:p.V618G exonic ENSMUSG00000021893 nonsynonymous SNV ENSMUST00000022451:c.T1853G:p.V618G 14qB NA NA chr14 32179418 AGGxTTA T G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 100 2 0 22.058391 0.321429 0.02 -0.24554 19 9 536 254 60 60 0 0 TT 17.443511 58 0 1589 0 KEEP + Capn7 NO MNNG_1 chr14 32367008 32367008 C T exonic Colq nonsynonymous SNV NM_009937:c.G137A:p.G46D exonic Colq nonsynonymous SNV uc007sxv.2:c.G137A:p.G46D exonic ENSMUSG00000057606 nonsynonymous SNV ENSMUST00000112027:c.G137A:p.G46D 14qB NA NA chr14 32367008 CTGxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 245 6 0 122.174202 0.444444 0.02 2.418534 60 48 1689 1315 60 60 0 0 CC 25.492835 85 0 2287 0 KEEP - Colq YES MNNG_1 chr14 32433081 32433081 C T exonic Hacl1 nonsynonymous SNV NM_019975:c.G952A:p.V318I exonic Hacl1 nonsynonymous SNV uc007sxx.2:c.G952A:p.V318I exonic ENSMUSG00000021884 nonsynonymous SNV ENSMUST00000127204:c.G871A:p.V291I 14qB NA NA chr14 32433081 TGAxATT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 63 2 0 9.123431 0.307692 0.02 -0.122774 9 4 263 107 60 60 0 0 CC 11.431118 38 0 1081 0 KEEP - Hacl1 YES MNNG_1 chr14 43042717 43042717 T G intergenic "1700091H14Rik(dist=368633),Gm10377(dist=328658)" NA NA intergenic "Sftpd(dist=1044230),AK047145(dist=19426)" NA NA exonic ENSMUSG00000091203 unknown UNKNOWN 14qB "Score=0.991191;Name=No.50818,chr14:42150289" NA chr14 43042717 ATGxTTT T G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 224 0 13 26.653222 0.323529 0.02 -0.298128 23 11 632 307 46 46 0 0 TT 46.310268 154 0 4186 0 KEEP NA 1700091H14Rik NO MNNG_1 chr14 44023952 44023952 T C exonic 1700001F09Rik nonsynonymous SNV NM_027940:c.A235G:p.R79G exonic 1700001F09Rik nonsynonymous SNV uc007tcz.1:c.A235G:p.R79G exonic ENSMUSG00000072603 nonsynonymous SNV ENSMUST00000095918:c.A235G:p.R79G 14qC1 "Score=0.984157;Name=No.51054,chr14:42268032" NA chr14 44023952 TTCxCTT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 525 8 184 28.728904 0.232143 0.02 1.204184 43 13 1220 357 60 40 0 0 TT 108.588835 361 0 10133 0 KEEP - 1700001F09Rik NO MNNG_1 chr14 50580551 50580551 G A exonic Olfr724 synonymous SNV NM_146492:c.C195T:p.N65N exonic Olfr724 synonymous SNV uc007tkn.2:c.C195T:p.N65N exonic ENSMUSG00000091220 synonymous SNV ENSMUST00000075030:c.C195T:p.N65N 14qC1 "Score=0.939885;Name=No.53336,chr14:50541948" NA chr14 50580551 GAGxTTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.582928 0.58293 0.999997 88 0 1 24.444751 0.384615 0.02 -0.227964 16 10 450 272 60 60 0 0 GG 14.13621 47 0 1295 0 KEEP - Olfr724 YES MNNG_1 chr14 50939626 50939626 C A exonic Olfr734 stopgain SNV NM_146664:c.G883T:p.E295X exonic Olfr734 stopgain SNV uc007tkx.1:c.G883T:p.E295X exonic ENSMUSG00000045306 stopgain SNV ENSMUST00000050928:c.G883T:p.E295X 14qC1 NA NA chr14 50939626 CTTxCTT C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 44 0 0 7.243298 0.333333 0.02 -0.078925 6 3 172 83 60 60 0 0 CC 9.024732 30 0 857 0 KEEP - Olfr734 NO MNNG_1 chr14 55192288 55192288 T C exonic Ajuba nonsynonymous SNV NM_010590:c.A1076G:p.N359S exonic Jub nonsynonymous SNV uc007twj.1:c.A1076G:p.N359S exonic ENSMUSG00000022178 nonsynonymous SNV ENSMUST00000054487:c.A1076G:p.N359S 14qC3 NA NA chr14 55192288 GCAxTGC T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 119 2 0 44.435409 0.295082 0.02 1.358055 43 18 1170 519 60 60 0 0 TT 11.429537 38 0 1052 0 KEEP - Ajuba NO MNNG_1 chr14 56161414 56161414 G A exonic Pck2 synonymous SNV NM_028994:c.G282A:p.E94E exonic Pck2 synonymous SNV uc007tyw.1:c.G282A:p.E94E exonic ENSMUSG00000040618 synonymous SNV ENSMUST00000048781:c.G282A:p.E94E 14qC3 NA NA chr14 56161414 CGAxGCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 103 2 0 66.728108 0.55814 0.02 -0.385824 19 24 539 681 60 60 0 0 GG 15.939799 53 0 1482 0 KEEP + Pck2 YES MNNG_1 chr14 56381847 56381847 A G UTR3 Ltb4r2 NA NA UTR3 Ltb4r2 NA NA downstream ENSMUSG00000040432 NA NA 14qC3 NA NA chr14 56381847 ACAxGAC A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 137 0 0 21.373613 0.178571 0.02 1.401378 46 10 1293 280 60 60 0 0 AA 18.648462 62 0 1723 0 KEEP + Ltb4r2 NO MNNG_1 chr14 56405164 56405164 C T exonic Ripk3 nonsynonymous SNV NM_001164107:c.G755A:p.S252N exonic Ripk3 nonsynonymous SNV uc007uav.2:c.G947A:p.S316N exonic ENSMUSG00000022221 nonsynonymous SNV ENSMUST00000022830:c.G947A:p.S316N 14qC3 NA NA chr14 56405164 CCGxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.78106 0.78106 1 98 0 0 52.12664 0.558824 0.02 -0.298139 15 19 435 532 60 60 0 0 CC 15.337988 51 0 1432 0 KEEP - Ripk3 YES MNNG_1 chr14 68427139 68427139 C T exonic Dock5 synonymous SNV NM_177780:c.G2250A:p.T750T exonic Dock5 synonymous SNV uc007ull.1:c.G2250A:p.T750T exonic ENSMUSG00000044447 synonymous SNV ENSMUST00000039135:c.G2250A:p.T750T 14qD1 NA NA chr14 68427139 TTCxGTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077329 0.077336 0.999909 35 0 0 13.699922 0.555556 0.02 -0.07891 4 5 105 140 60 60 0 0 CC 7.208515 24 0 576 0 KEEP - Dock5 YES MNNG_1 chr14 70557431 70557431 C T exonic 9930012K11Rik nonsynonymous SNV NM_001004155:c.G80A:p.C27Y exonic 9930012K11Rik nonsynonymous SNV uc007ung.2:c.G80A:p.C27Y exonic ENSMUSG00000044551 nonsynonymous SNV ENSMUST00000058240:c.G80A:p.C27Y 14qD2 NA NA chr14 70557431 ACAxAGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 158 0 0 75.149315 0.43662 0.02 0.966053 40 31 1162 815 60 60 0 0 CC 19.249522 64 0 1791 0 KEEP - 9930012K11Rik YES MNNG_1 chr14 76107800 76107800 G A exonic Cog3 synonymous SNV NM_177381:c.C2287T:p.L763L exonic Cog3 synonymous SNV uc007uqw.1:c.C2287T:p.L763L exonic ENSMUSG00000034893 synonymous SNV ENSMUST00000049168:c.C2287T:p.L763L 14qD3 NA NA chr14 76107800 TCAxCGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 48 0 0 17.315842 0.35 0.02 -0.175387 13 7 370 196 60 60 0 0 GG 6.917821 23 0 636 0 KEEP - Cog3 YES MNNG_1 chr14 8756742 8756742 G A exonic Flnb synonymous SNV NM_134080:c.G5307A:p.K1769K exonic Flnb synonymous SNV uc007sek.1:c.G5307A:p.K1769K exonic ENSMUSG00000025278 synonymous SNV ENSMUST00000052678:c.G5340A:p.K1780K 14qA1 NA NA chr14 8756742 CAAxGAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888753 0.888875 0.999863 75 0 0 30.278027 0.317073 0.02 -0.35944 28 13 799 352 60 60 0 0 GG 6.015856 20 0 561 0 KEEP + Flnb YES MNNG_1 chr14 8771588 8771588 G A exonic Flnb nonsynonymous SNV NM_134080:c.G6883A:p.A2295T exonic Flnb nonsynonymous SNV uc007sek.1:c.G6883A:p.A2295T exonic ENSMUSG00000025278 nonsynonymous SNV ENSMUST00000052678:c.G6916A:p.A2306T 14qA1 NA NA chr14 8771588 CCAxCGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780965 0.78106 0.999879 64 3 0 35.672783 0.411765 0.02 -0.298173 20 14 588 390 60 60 0 0 GG 6.618378 22 0 633 0 KEEP + Flnb YES MNNG_1 chr15 100135718 100135718 G C exonic Mettl7a1 synonymous SNV NM_027334:c.G441C:p.L147L exonic Mettl7a1 synonymous SNV uc007xqv.1:c.G441C:p.L147L exonic ENSMUSG00000054619 synonymous SNV ENSMUST00000067752:c.G441C:p.L147L 15qF1 "Score=0.932893;Name=No.57825,chr15:100165334" NA chr15 100135718 GCTxTGC G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963642 0.963774 0.999863 95 0 13 32.293604 0.265306 0.02 1.444943 36 13 1017 384 60 36 0 0 GG 7.21864 24 0 664 0 KEEP + Mettl7a1 NO MNNG_1 chr15 100184081 100184081 G C exonic "AB099516,Mettl7a2" synonymous SNV NM_001024672:c.G441C:p.L147L exonic "AB099516,Mettl7a2" synonymous SNV uc007xqy.1:c.G441C:p.L147L exonic ENSMUSG00000056487 synonymous SNV ENSMUST00000075675:c.G441C:p.L147L 15qF1 "Score=0.930501;Name=No.57826,chr15:100135253" NA chr15 100184081 GCTxTGC G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98185 0.981955 0.999892 118 0 22 17.349363 0.142857 0.02 1.293743 48 8 1342 235 60 46 0 0 GG 9.921614 33 0 875 0 KEEP + AB099516 NO MNNG_1 chr15 100356070 100356070 G A exonic Tfcp2 synonymous SNV NM_033476:c.C385T:p.L129L exonic Tcfcp2 synonymous SNV uc007xrm.1:c.C385T:p.L129L exonic ENSMUSG00000009733 synonymous SNV ENSMUST00000009877:c.C385T:p.L129L 15qF1 NA NA chr15 100356070 GCAxTCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 320 7 0 181.439296 0.496503 0.02 2.102429 72 71 1985 1906 60 60 0 0 GG 33.384309 111 0 3066 0 KEEP - Tfcp2 YES MNNG_1 chr15 101777776 101777776 G A exonic Krt78 nonsynonymous SNV NM_212487:c.C2030T:p.T677I exonic Krt78 nonsynonymous SNV uc007xuh.1:c.C2030T:p.T677I exonic ENSMUSG00000050463 nonsynonymous SNV ENSMUST00000062260:c.C2030T:p.T677I 15qF3 NA NA chr15 101777776 ACGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 856 5 1 491.029361 0.446581 0.02 11.123431 259 209 7291 5314 60 60 0 0 GG 86.829246 289 0 7763 0 KEEP - Krt78 YES MNNG_1 chr15 101781293 101781293 G A exonic Krt78 nonsynonymous SNV NM_212487:c.C899T:p.T300I exonic Krt78 nonsynonymous SNV uc007xuh.1:c.C899T:p.T300I exonic ENSMUSG00000050463 nonsynonymous SNV ENSMUST00000062260:c.C899T:p.T300I 15qF3 NA NA chr15 101781293 TTGxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 169 5 0 94.959474 0.420455 0.02 0.924067 51 37 1448 1033 60 60 0 0 GG 14.135881 47 0 1295 0 KEEP - Krt78 YES MNNG_1 chr15 101829341 101829341 G A exonic Krt8 nonsynonymous SNV NM_031170:c.C737T:p.S246L exonic Krt8 nonsynonymous SNV uc007xui.1:c.C737T:p.S246L exonic ENSMUSG00000049382 nonsynonymous SNV ENSMUST00000023952:c.C737T:p.S246L 15qF3 NA NA chr15 101829341 TCTxAGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 95 2 0 64.99883 0.489796 0.02 -0.429736 25 24 741 683 60 60 0 0 GG 11.129625 37 0 1055 0 KEEP - Krt8 YES MNNG_1 chr15 102018523 102018523 G A exonic Csad nonsynonymous SNV NM_144942:c.C259T:p.P87S exonic Csad nonsynonymous SNV uc007xuu.1:c.C259T:p.P87S exonic ENSMUSG00000023044 nonsynonymous SNV ENSMUST00000023805:c.C259T:p.P87S 15qF3 NA NA chr15 102018523 GGGxGTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 113 0 0 81.357279 0.483871 0.02 1.249805 32 30 929 857 60 60 0 0 GG 12.928813 43 0 1179 0 KEEP - Csad YES MNNG_1 chr15 102129675 102129675 G A intronic Espl1 NA NA intronic Espl1 NA NA intronic ENSMUSG00000058290 NA NA 15qF3 NA NA chr15 102129675 TGAxTTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 75 1 0 46.166614 0.473684 0.02 -0.333209 20 18 566 490 60 60 0 0 GG 9.312249 31 0 848 0 KEEP + Espl1 YES MNNG_1 chr15 102502208 102502208 G A upstream;downstream Atp5g2;Mir688 NA NA upstream;downstream Atp5g2;Mir688 NA NA upstream;downstream ENSMUSG00000062683;ENSMUSG00000076009 NA NA 15qF3 NA NA chr15 102502208 CCTxTCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970819 0.97082 0.999999 94 0 0 76.943167 0.566038 0.02 1.035338 23 30 665 784 60 60 0 0 GG 10.829241 36 0 1026 0 KEEP NA Atp5g2 YES MNNG_1 chr15 103119146 103119146 G A intronic Copz1 NA NA intronic Copz1 NA NA intronic ENSMUSG00000060992 NA NA 15qF3 NA NA chr15 103119146 AGAxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351693 0.353947 0.993634 36 0 0 24.284063 0.473684 0.02 -0.166631 10 9 293 257 60 60 0 0 GG 3.609947 12 0 344 0 KEEP + Copz1 YES MNNG_1 chr15 10391699 10391699 C T exonic Dnajc21 nonsynonymous SNV NM_030046:c.G370A:p.E124K exonic Dnajc21 nonsynonymous SNV uc007vgc.2:c.G370A:p.E124K exonic ENSMUSG00000044224 nonsynonymous SNV ENSMUST00000136591:c.G370A:p.E124K 15qA1 NA NA chr15 10391699 ACTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 82 1 0 18.436176 0.466667 0.02 -0.131544 8 7 240 196 60 60 0 0 CC 18.049303 60 0 1708 0 KEEP - Dnajc21 YES MNNG_1 chr15 10415580 10415580 C T exonic Brix1 synonymous SNV NM_026396:c.G69A:p.S23S exonic Brix1 synonymous SNV uc007vgg.1:c.G69A:p.S23S exonic ENSMUSG00000022247 synonymous SNV ENSMUST00000022855:c.G69A:p.S23S 15qA1 NA NA chr15 10415580 TTTxGAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 776 9 0 333.577873 0.463235 0.02 6.039482 146 126 3990 3550 60 60 0 0 CC 110.631472 375 2 9919 16 KEEP - Brix1 YES MNNG_1 chr15 12972447 12972447 C A intronic Cdh6 NA NA intronic Cdh6 NA NA intronic ENSMUSG00000039385 NA NA 15qA1 NA NA chr15 12972447 CACxAAA C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 68 4 0 17.001844 0.304348 0.02 -0.201711 16 7 469 198 60 60 0 0 CC 9.915103 33 0 928 0 KEEP - Cdh6 NO MNNG_1 chr15 18943162 18943162 C T exonic Cdh10 nonsynonymous SNV NM_009865:c.C2092T:p.P698S exonic Cdh10 nonsynonymous SNV uc007vim.1:c.C667T:p.P223S exonic ENSMUSG00000022321 nonsynonymous SNV ENSMUST00000040562:c.C2092T:p.P698S 15qA2 NA NA chr15 18943162 ATAxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 51 0 0 16.515165 0.35 0.02 -0.17538 13 7 373 188 60 60 0 0 CC 8.119812 27 0 735 0 KEEP + Cdh10 YES MNNG_1 chr15 23366347 23366347 C T intronic Cdh18 NA NA intronic Cdh18 NA NA intronic ENSMUSG00000040420 NA NA 15qA2 NA NA chr15 23366347 TTCxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 38 0 0 25.129242 0.5625 0.02 -0.140322 7 9 208 256 60 60 0 0 CC 6.305298 21 0 584 0 KEEP + Cdh18 YES MNNG_1 chr15 34888817 34888817 C T exonic Stk3 synonymous SNV NM_019635:c.G963A:p.L321L exonic Stk3 synonymous SNV uc011zrz.1:c.G753A:p.L251L exonic ENSMUSG00000022329 synonymous SNV ENSMUST00000067033:c.G753A:p.L251L 15qB3.1 NA NA chr15 34888817 ATCxAGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 56 0 0 40.414184 0.736842 0.02 -0.201669 5 14 148 385 60 60 0 0 CC 8.411158 28 0 786 0 KEEP - Stk3 YES MNNG_1 chr15 35840464 35840464 C T exonic Vps13b synonymous SNV NM_177151:c.C10618T:p.L3540L exonic Vps13b synonymous SNV uc007vmh.2:c.C10618T:p.L3540L exonic ENSMUSG00000037646 synonymous SNV ENSMUST00000048646:c.C10618T:p.L3540L 15qB3.1 NA NA chr15 35840464 GTGxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934452 0.934492 0.999957 83 0 0 56.342888 0.488889 0.02 -0.403342 23 22 672 594 60 60 0 0 CC 7.820895 26 0 734 0 KEEP + Vps13b YES MNNG_1 chr15 40934229 40934229 G A exonic Zfpm2 nonsynonymous SNV NM_011766:c.G2563A:p.E855K exonic Zfpm2 nonsynonymous SNV uc007vos.1:c.G2563A:p.E855K exonic ENSMUSG00000022306 nonsynonymous SNV ENSMUST00000053467:c.G2563A:p.E855K 15qB3.1 NA NA chr15 40934229 CACxAGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 102 2 0 34.047584 0.419355 0.02 -0.280542 18 13 473 370 60 60 0 0 GG 18.027727 60 0 1525 0 KEEP + Zfpm2 YES MNNG_1 chr15 4864137 4864137 C T exonic Mroh2b nonsynonymous SNV NM_001166066:c.C1154T:p.A385V exonic Heatr7b2 nonsynonymous SNV uc011zqx.1:c.C1154T:p.A385V exonic ENSMUSG00000022155 nonsynonymous SNV ENSMUST00000045736:c.C1154T:p.A385V 15qA1 NA NA chr15 4864137 AAGxTCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 138 2 0 44.098768 0.404762 0.02 -0.368324 25 17 724 483 60 60 0 0 CC 22.26068 74 0 2109 0 KEEP + Mroh2b YES MNNG_1 chr15 4867317 4867317 C T intronic Mroh2b NA NA intronic Heatr7b2 NA NA intronic ENSMUSG00000022155 NA NA 15qA1 NA NA chr15 4867317 TTCxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 116 0 0 60.251764 0.545455 0.02 -0.393126 20 24 574 621 60 60 0 0 CC 16.807282 56 0 1479 0 KEEP + Mroh2b YES MNNG_1 chr15 5067367 5067367 C T exonic Rpl37 synonymous SNV NM_026069:c.C84T:p.H28H exonic Rpl37 synonymous SNV uc007vcs.2:c.C84T:p.H28H exonic ENSMUSG00000041841 synonymous SNV ENSMUST00000045356:c.C84T:p.H28H 15qA1 NA NA chr15 5067367 CCAxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 97 1 5 24.845407 0.357143 0.02 -0.245529 18 10 509 280 60 60 0 0 CC 15.264779 51 0 1365 0 KEEP + Rpl37 YES MNNG_1 chr15 52163113 52163113 G A intronic Slc30a8 NA NA intronic Slc30a8 NA NA intronic ENSMUSG00000022315 NA NA 15qC NA NA chr15 52163113 TGTxTTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 85 0 0 38.751456 0.535714 0.02 -0.245529 13 15 383 400 60 60 0 0 GG 14.138259 47 0 1336 0 KEEP + Slc30a8 YES MNNG_1 chr15 6602422 6602422 C T exonic Fyb nonsynonymous SNV NM_001278269:c.C2111T:p.A704V exonic Fyb nonsynonymous SNV uc007vdk.1:c.C2111T:p.A704V exonic ENSMUSG00000022148 nonsynonymous SNV ENSMUST00000110659:c.C2111T:p.A704V 15qA1 NA NA chr15 6602422 TTGxGTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099257 0.099721 0.995343 25 0 0 12.874033 0.5 0.02 -0.087676 5 5 138 135 60 60 0 0 CC 4.208851 14 0 367 0 KEEP + Fyb YES MNNG_1 chr15 6610612 6610612 C T intronic Fyb NA NA intronic Fyb NA NA intronic ENSMUSG00000022148 NA NA 15qA1 NA NA chr15 6610612 CTGxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 56 2 0 6.732399 0.272727 0.02 -0.096464 8 3 231 81 60 60 0 0 CC 11.429408 38 0 1049 0 KEEP + Fyb YES MNNG_1 chr15 66573155 66573155 G A exonic Tg nonsynonymous SNV NM_009375:c.G6154A:p.V2052I exonic Tg nonsynonymous SNV uc007wap.1:c.G6154A:p.V2052I exonic ENSMUSG00000053469 nonsynonymous SNV ENSMUST00000065916:c.G6154A:p.V2052I 15qD2 NA NA chr15 66573155 GAAxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 144 1 0 79.377402 0.526316 0.02 1.195591 27 30 760 822 60 60 0 0 GG 21.055488 70 0 1963 0 KEEP + Tg YES MNNG_1 chr15 66660005 66660005 C T exonic Tg synonymous SNV NM_009375:c.C7446T:p.V2482V exonic Tg synonymous SNV uc007wap.1:c.C7446T:p.V2482V exonic ENSMUSG00000053469 synonymous SNV ENSMUST00000065916:c.C7446T:p.V2482V 15qD2 NA NA chr15 66660005 GGTxGAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 179 0 0 32.270007 0.214286 0.02 1.072795 55 15 1480 409 60 60 0 0 CC 22.187037 74 0 1858 0 KEEP + Tg YES MNNG_1 chr15 6765791 6765791 T C exonic Osmr synonymous SNV NM_011019:c.A2496G:p.P832P exonic Osmr synonymous SNV uc007vdt.2:c.A2496G:p.P832P exonic ENSMUSG00000022146 synonymous SNV ENSMUST00000022746:c.A2496G:p.P832P 15qA1 NA NA chr15 6765791 GATxGGC T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 49 0 0 58.638919 1 0.02 -0.166525 0 19 0 496 0 60 0 0 TT 7.206121 24 0 639 0 KEEP - Osmr NO MNNG_1 chr15 71279121 71279121 G A exonic Fam135b nonsynonymous SNV NM_177819:c.C3986T:p.A1329V exonic Fam135b nonsynonymous SNV uc011ztr.1:c.C3986T:p.A1329V exonic ENSMUSG00000036800 nonsynonymous SNV ENSMUST00000022953:c.C3986T:p.A1329V 15qD3 NA NA chr15 71279121 AGGxCGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999998 82 0 0 36.70893 0.424242 0.02 -0.298164 19 14 546 398 60 60 0 0 GG 10.176575 34 0 914 0 KEEP - Fam135b YES MNNG_1 chr15 71634526 71634526 G A intronic Col22a1 NA NA intronic Col22a1 NA NA intronic ENSMUSG00000079022 NA NA 15qD3 NA NA chr15 71634526 TCAxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 243 4 0 123.615036 0.451923 0.02 2.469631 57 47 1675 1323 60 60 0 0 GG 30.685144 102 0 2936 0 KEEP - Col22a1 YES MNNG_1 chr15 73072777 73072777 G T intronic Ptk2 NA NA intronic Ptk2 NA NA intronic ENSMUSG00000022607 NA NA 15qD3 NA NA chr15 73072777 ATGxGGC G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 174 4 0 13.851496 0.089888 0.02 0.914677 81 8 2387 217 60 60 0 0 GG 17.143846 57 0 1596 0 KEEP - Ptk2 NO MNNG_1 chr15 74437071 74437071 G A intronic Mroh4 NA NA intronic 1700016M24Rik NA NA intronic ENSMUSG00000022603 NA NA 15qD3 NA NA chr15 74437071 TGGxGAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 140 0 0 9.715679 0.172414 0.02 -0.427608 24 5 671 131 60 60 0 0 GG 20.453996 68 0 1901 0 KEEP - Mroh4 YES MNNG_1 chr15 74458029 74458029 G A intronic Mroh4 NA NA intronic 1700016M24Rik NA NA intronic ENSMUSG00000022603 NA NA 15qD3 NA NA chr15 74458029 TCGxGAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.859287 0.865745 0.99254 51 0 0 50.919076 0.5 0.02 -0.341958 19 19 541 533 60 60 0 0 GG 2.707055 9 0 250 0 KEEP - Mroh4 YES MNNG_1 chr15 75724291 75724291 G A intronic Naprt1 NA NA intronic Naprt1 NA NA intronic ENSMUSG00000022574 NA NA 15qD3 NA NA chr15 75724291 AGAxAAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 85 2 0 47.494263 0.461538 0.02 -0.342008 21 18 614 506 60 60 0 0 GG 9.625333 32 0 905 0 KEEP - Naprt1 YES MNNG_1 chr15 75836783 75836783 G A exonic Fam83h synonymous SNV NM_001168253:c.C195T:p.S65S exonic Fam83h synonymous SNV uc007wic.2:c.C195T:p.S65S exonic ENSMUSG00000046761 synonymous SNV ENSMUST00000060807:c.C195T:p.S65S 15qD3 NA NA chr15 75836783 GCGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 224 0 0 167.618927 0.511811 0.02 2.268636 62 65 1801 1749 60 60 0 0 GG 19.84373 66 0 1789 0 KEEP - Fam83h YES MNNG_1 chr15 75934172 75934172 G A exonic Eppk1 nonsynonymous SNV NM_144848:c.C8938T:p.L2980F exonic Eppk1 nonsynonymous SNV uc007wio.1:c.C8938T:p.L2980F intergenic "ENSMUSG00000075590(dist=13729),ENSMUSG00000044361(dist=15775)" NA NA 15qD3 NA NA chr15 75934172 GAAxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 518 3 172 36.585873 0.086066 0.02 4.632579 223 21 6473 576 60 46 0 0 GG 35.7815 119 0 3363 0 KEEP - Eppk1 YES MNNG_1 chr15 75938089 75938089 G A exonic Eppk1 nonsynonymous SNV NM_144848:c.C5021T:p.A1674V exonic Eppk1 nonsynonymous SNV uc007wio.1:c.C5021T:p.A1674V intergenic "ENSMUSG00000075590(dist=17646),ENSMUSG00000044361(dist=11858)" NA NA 15qD3 NA NA chr15 75938089 ATGxCCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9266 0.92664 0.999957 76 0 0 42.57532 0.395349 0.02 -0.39463 26 17 758 470 60 60 0 0 GG 7.819969 26 0 715 0 KEEP - Eppk1 YES MNNG_1 chr15 75940779 75940779 G A exonic Eppk1 synonymous SNV NM_144848:c.C2331T:p.D777D exonic Eppk1 synonymous SNV uc007wio.1:c.C2331T:p.D777D intergenic "ENSMUSG00000075590(dist=20336),ENSMUSG00000044361(dist=9168)" NA NA 15qD3 NA NA chr15 75940779 GGGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 63 0 0 26.858027 0.47619 0.02 -0.192874 11 10 316 284 60 60 0 0 GG 9.9262 33 0 922 0 KEEP - Eppk1 YES MNNG_1 chr15 76005192 76005192 G A exonic Plec synonymous SNV NM_011117:c.C11127T:p.R3709R exonic Plec synonymous SNV uc007wir.2:c.C11040T:p.R3680R exonic ENSMUSG00000022565 synonymous SNV ENSMUST00000023226:c.C11040T:p.R3680R 15qD3 NA NA chr15 76005192 GTAxCGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987942 0.987943 0.999999 106 1 0 65.874212 0.433333 0.02 1.169224 34 26 957 713 60 60 0 0 GG 10.829227 36 0 1020 0 KEEP - Plec YES MNNG_1 chr15 76178348 76178348 G A exonic Sharpin nonsynonymous SNV NM_025340:c.C737T:p.S246F exonic Sharpin nonsynonymous SNV uc007wju.2:c.C737T:p.S246F exonic ENSMUSG00000022552 nonsynonymous SNV ENSMUST00000023211:c.C737T:p.S246F 15qD3 NA NA chr15 76178348 ATGxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 123 3 0 81.508137 0.535714 0.02 1.204148 26 30 764 840 60 60 0 0 GG 14.439033 48 0 1360 0 KEEP - Sharpin YES MNNG_1 chr15 76307551 76307551 G A intronic Bop1 NA NA intronic Bop1 NA NA intronic ENSMUSG00000022557 NA NA 15qD3 NA NA chr15 76307551 TTGxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 98 1 0 40.221934 0.441176 0.02 -0.298182 19 15 558 432 60 60 0 0 GG 12.634485 42 0 1195 0 KEEP - Bop1 YES MNNG_1 chr15 76368175 76368175 G A exonic Fbxl6 nonsynonymous SNV NM_013909:c.C593T:p.S198F exonic Fbxl6 nonsynonymous SNV uc007wkq.2:c.C593T:p.S198F exonic ENSMUSG00000022559 nonsynonymous SNV ENSMUST00000023219:c.C593T:p.S198F 15qD3 NA NA chr15 76368175 TGAxACT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457701 0.457757 0.999879 50 2 0 22.912203 0.45 0.02 -0.175369 11 9 325 246 60 60 0 0 GG 6.618588 22 0 638 0 KEEP - Fbxl6 YES MNNG_1 chr15 76433630 76433630 G A intronic Cpsf1 NA NA intronic Cpsf1 NA NA intronic ENSMUSG00000034022 NA NA 15qD3 NA NA chr15 76433630 GGGxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99105 0.995687 0.995343 90 0 0 78.792553 0.441176 0.02 1.100255 38 30 1093 847 60 60 0 0 GG 4.211044 14 0 391 0 KEEP - Cpsf1 YES MNNG_1 chr15 76460253 76460253 G A exonic Tonsl nonsynonymous SNV NM_183091:c.C3545T:p.T1182I exonic Tonsl nonsynonymous SNV uc007wle.2:c.C3545T:p.T1182I exonic ENSMUSG00000059323 nonsynonymous SNV ENSMUST00000079806:c.C3095T:p.T1032I 15qD3 NA NA chr15 76460253 AAGxTTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 139 2 0 73.826914 0.5 0.02 1.179034 29 29 809 775 60 60 0 1 GG 17.443689 58 0 1584 0 KEEP - Tonsl YES MNNG_1 chr15 76544817 76544817 G A exonic Lrrc14 nonsynonymous SNV NM_145471:c.G1222A:p.A408T exonic Lrrc14 nonsynonymous SNV uc007wmb.1:c.G943A:p.A315T exonic ENSMUSG00000033728 nonsynonymous SNV ENSMUST00000036423:c.G1222A:p.A408T 15qD3 NA NA chr15 76544817 ATGxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 221 2 0 141.443187 0.53 0.02 2.504798 47 53 1346 1462 60 60 0 0 GG 25.829204 86 0 2357 0 KEEP + Lrrc14 YES MNNG_1 chr15 76700322 76700322 G A exonic Zfp251 synonymous SNV NM_001007568:c.C192T:p.I64I exonic Zfp251 synonymous SNV uc007wml.1:c.C177T:p.I59I exonic ENSMUSG00000022526 synonymous SNV ENSMUST00000080406:c.C192T:p.I64I 15qD3 NA NA chr15 76700322 GGAxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 261 2 0 135.487083 0.414062 0.02 2.269382 75 53 2156 1479 60 60 0 0 GG 27.057706 90 0 2523 0 KEEP - Zfp251 YES MNNG_1 chr15 77592486 77592486 G A intronic Myh9 NA NA intronic Myh9 NA NA intronic ENSMUSG00000022443 NA NA 15qE1 NA NA chr15 77592486 AAAxAGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954357 0.954491 0.999859 75 0 0 61.022091 0.489362 0.02 -0.429705 24 23 704 642 60 60 0 0 GG 5.414549 18 0 510 0 KEEP - Myh9 YES MNNG_1 chr15 77792927 77792927 G A exonic Eif3d synonymous SNV NM_018749:c.C933T:p.N311N exonic Eif3d synonymous SNV uc007wom.1:c.C933T:p.N311N exonic ENSMUSG00000016554 synonymous SNV ENSMUST00000100484:c.C933T:p.N311N 15qE1 NA NA chr15 77792927 CAGxTTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.979522 0.979526 0.999995 109 2 0 51.232659 0.381818 0.02 1.204204 34 21 973 571 60 60 0 0 GG 13.518602 45 0 1217 0 KEEP + Eif3d YES MNNG_1 chr15 77825560 77825560 G A UTR3 Cacng2 NA NA UTR3 Cacng2 NA NA UTR3 ENSMUSG00000019146 NA NA 15qE1 NA NA chr15 77825560 AGGxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986015 0.986153 0.99986 87 2 0 40.507782 0.386364 0.02 1.277335 27 17 773 452 60 60 0 0 GG 5.714578 19 0 523 0 KEEP - Cacng2 YES MNNG_1 chr15 78736867 78736867 G A exonic Sh3bp1 nonsynonymous SNV NM_009164:c.G1133A:p.G378E exonic Sh3bp1 nonsynonymous SNV uc007wrr.1:c.G941A:p.G314E exonic ENSMUSG00000022436 nonsynonymous SNV ENSMUST00000109695:c.G896A:p.G299E 15qE1 NA NA chr15 78736867 CAGxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 362 4 0 180.801414 0.442308 0.02 3.700549 87 69 2478 1944 60 60 0 0 GG 38.758139 129 0 3626 0 KEEP + Sh3bp1 YES MNNG_1 chr15 78986673 78986673 G A exonic Sox10 nonsynonymous SNV NM_011437:c.C1096T:p.P366S exonic Sox10 nonsynonymous SNV uc007wsu.2:c.C1096T:p.P366S exonic ENSMUSG00000033006 nonsynonymous SNV ENSMUST00000040019:c.C1096T:p.P366S 15qE1 NA NA chr15 78986673 GGGxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 296 3 0 235.043804 0.535294 0.02 3.569268 79 91 2272 2427 60 60 0 0 GG 23.68249 79 0 2127 0 KEEP - Sox10 YES MNNG_1 chr15 79251094 79251094 G A exonic Csnk1e nonsynonymous SNV NM_013767:c.C1138T:p.L380F exonic Csnk1e nonsynonymous SNV uc007wtl.2:c.C1138T:p.L380F exonic ENSMUSG00000022433 nonsynonymous SNV ENSMUST00000079284:c.C1138T:p.L380F 15qE1 NA NA chr15 79251094 GGAxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 180 0 0 107.990043 0.447917 0.02 0.85444 53 43 1527 1162 60 60 0 0 GG 17.726438 59 0 1620 0 KEEP - Csnk1e YES MNNG_1 chr15 79502415 79502415 G A exonic Tomm22 nonsynonymous SNV NM_172609:c.G325A:p.E109K exonic Tomm22 nonsynonymous SNV uc007wud.1:c.G325A:p.E109K exonic ENSMUSG00000022427 nonsynonymous SNV ENSMUST00000023062:c.G325A:p.E109K 15qE1 NA NA chr15 79502415 ATGxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 130 2 1 84.580292 0.534483 0.02 1.177839 27 31 791 872 60 60 0 0 GG 17.393923 58 0 1611 0 KEEP + Tomm22 YES MNNG_1 chr15 79988223 79988223 G A exonic Tab1 nonsynonymous SNV NM_025609:c.G1111A:p.E371K exonic Tab1 nonsynonymous SNV uc007wve.1:c.G1111A:p.E371K exonic ENSMUSG00000022414 nonsynonymous SNV ENSMUST00000023050:c.G1111A:p.E371K 15qE1 NA NA chr15 79988223 GGTxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 255 2 0 130.959268 0.424 0.02 2.277405 72 53 2064 1427 60 60 0 0 GG 28.268181 94 0 2649 0 KEEP + Tab1 YES MNNG_1 chr15 81525375 81525375 G A exonic Chadl nonsynonymous SNV NM_001164320:c.C482T:p.T161I exonic Chadl nonsynonymous SNV uc007wwy.2:c.C482T:p.T161I exonic ENSMUSG00000063765 nonsynonymous SNV ENSMUST00000072910:c.C482T:p.T161I 15qE1 NA NA chr15 81525375 AGAxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.90895 0.909069 0.999869 78 4 0 63.687537 0.571429 0.02 -0.376861 18 24 508 647 60 60 0 0 GG 6.316541 21 0 585 0 KEEP - Chadl YES MNNG_1 chr15 82946091 82946091 G A exonic Serhl nonsynonymous SNV NM_023475:c.G811A:p.E271K exonic Serhl nonsynonymous SNV uc011zxa.1:c.G460A:p.E154K exonic ENSMUSG00000058586 nonsynonymous SNV ENSMUST00000166427:c.G841A:p.E281K 15qE1 NA NA chr15 82946091 AAGxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877601 0.877708 0.999879 71 0 0 34.333082 0.35 0.02 -0.350686 26 14 739 389 60 60 0 0 GG 6.618149 22 0 628 0 KEEP + Serhl YES MNNG_1 chr15 82953069 82953069 G A intronic Rrp7a NA NA intronic Rrp7a NA NA intronic ENSMUSG00000018040 NA NA 15qE1 NA NA chr15 82953069 TGGxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.663536 0.668523 0.99254 40 1 0 40.831572 0.517241 0.02 -0.254301 14 15 398 424 60 60 0 0 GG 2.707285 9 0 254 0 KEEP - Rrp7a YES MNNG_1 chr15 83465074 83465074 G A intronic Scube1 NA NA intronic Scube1 NA NA intronic ENSMUSG00000016763 NA NA 15qE2 NA NA chr15 83465074 AGTxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 285 1 0 154.205382 0.442857 0.02 2.359716 78 62 2261 1664 60 60 0 0 GG 30.080822 100 0 2856 0 KEEP - Scube1 YES MNNG_1 chr15 83952857 83952857 G A exonic Pnpla5 synonymous SNV NM_029427:c.C354T:p.I118I exonic Pnpla5 synonymous SNV uc007xbu.1:c.C354T:p.I118I exonic ENSMUSG00000018868 synonymous SNV ENSMUST00000019012:c.C354T:p.I118I 15qE2 NA NA chr15 83952857 GGAxATG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 59 2 0 22.698895 0.375 0.02 -0.210424 15 9 430 253 60 60 0 0 GG 7.518997 25 0 704 0 KEEP - Pnpla5 YES MNNG_1 chr15 8599563 8599563 C T exonic Slc1a3 nonsynonymous SNV NM_148938:c.G547A:p.V183I exonic Slc1a3 nonsynonymous SNV uc007vex.1:c.G19A:p.V7I exonic ENSMUSG00000005360 nonsynonymous SNV ENSMUST00000005493:c.G547A:p.V183I 15qA1 NA NA chr15 8599563 CTAxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 95 2 0 47.551576 0.514286 0.02 -0.306912 17 18 488 495 60 60 0 0 CC 12.33304 41 0 1155 0 KEEP - Slc1a3 YES MNNG_1 chr15 88850898 88850898 G A intronic Mov10l1 NA NA intronic Mov10l1 NA NA intronic ENSMUSG00000015365 NA NA 15qE3 NA NA chr15 88850898 TGGxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 147 4 0 88.867656 0.515152 0.02 1.107976 32 34 863 925 60 60 0 0 GG 18.345293 61 0 1653 0 KEEP + Mov10l1 YES MNNG_1 chr15 88965495 88965495 G A intronic Mapk12 NA NA intronic Mapk12 NA NA intronic ENSMUSG00000022610 NA NA 15qE3 NA NA chr15 88965495 TAGxGGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.385603 0.387407 0.995343 36 0 0 25.524986 0.5 0.02 -0.17515 10 10 293 268 60 60 0 0 GG 4.210875 14 0 387 0 KEEP - Mapk12 YES MNNG_1 chr15 89133557 89133557 G A exonic Sbf1 nonsynonymous SNV NM_001081030:c.C2147T:p.S716F exonic Sbf1 nonsynonymous SNV uc007xfz.1:c.C2147T:p.S716F exonic ENSMUSG00000036529 nonsynonymous SNV ENSMUST00000123791:c.C2147T:p.S716F 15qE3 NA NA chr15 89133557 TGAxACT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 137 3 0 68.698559 0.375 0.02 1.06401 45 27 1293 765 60 60 0 0 GG 14.139039 47 0 1347 0 KEEP - Sbf1 YES MNNG_1 chr15 89362719 89362719 G A intronic Shank3 NA NA intronic Shank3 NA NA intronic ENSMUSG00000022623 NA NA 15qE3 NA NA chr15 89362719 GGGxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.902287 0.909069 0.99254 58 1 0 66.223776 0.55814 0.02 -0.377088 19 24 560 676 60 60 0 0 GG 2.707285 9 0 254 0 KEEP + Shank3 YES MNNG_1 chr15 90774255 90774255 T A exonic Kif21a nonsynonymous SNV NM_001109042:c.A3716T:p.H1239L exonic Kif21a nonsynonymous SNV uc007xhr.2:c.A437T:p.H146L exonic ENSMUSG00000022629 nonsynonymous SNV ENSMUST00000109287:c.A3716T:p.H1239L 15qE3 NA NA chr15 90774255 GTGxGCC T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353901 0.353947 0.999869 47 0 0 31.130112 0.578947 0.02 -0.166611 8 11 218 315 60 60 0 0 TT 6.315263 21 0 564 0 KEEP - Kif21a NO MNNG_1 chr15 96847183 96847183 G A intronic Slc38a4 NA NA intronic Slc38a4 NA NA intronic ENSMUSG00000022464 NA NA 15qF1 NA NA chr15 96847183 GCGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 183 6 0 54.728334 0.4375 0.02 -0.429726 27 21 798 590 60 60 0 0 GG 31.279082 104 0 2889 0 KEEP - Slc38a4 YES MNNG_1 chr15 97875740 97875740 G A exonic Senp1 synonymous SNV NM_144851:c.C1854T:p.F618F exonic Senp1 synonymous SNV uc007xls.2:c.C1854T:p.F618F exonic ENSMUSG00000033075 synonymous SNV ENSMUST00000166790:c.C891T:p.F297F 15qF1 NA NA chr15 97875740 TGTxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 67 0 0 15.5489 0.5 0.02 -0.113985 6 6 171 163 60 60 0 0 GG 12.635052 42 0 1209 0 KEEP - Senp1 YES MNNG_1 chr15 98040561 98040561 G A intronic Olfr287 NA NA intronic "Olfr287,Olfr288" NA NA intronic "ENSMUSG00000075427,ENSMUSG00000090129" NA NA 15qF1 NA NA chr15 98040561 GAAxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 439 6 15 264.072371 0.442982 0.02 4.772694 127 101 3731 2839 60 60 0 0 GG 41.213395 137 0 3928 0 KEEP - Olfr287 YES MNNG_1 chr15 98481878 98481878 G A intronic Ddx23 NA NA intronic Ddx23 NA NA intronic ENSMUSG00000003360 NA NA 15qF1 NA NA chr15 98481878 GGGxGGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 104 0 0 30.70118 0.48 0.02 -0.236728 13 12 374 325 60 60 0 0 GG 17.614888 59 0 1540 0 KEEP - Ddx23 YES MNNG_1 chr15 99136528 99136528 G A intronic Prpf40b NA NA intronic Prpf40b NA NA intronic ENSMUSG00000023007 NA NA 15qF1 NA NA chr15 99136528 GGGxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 129 0 0 73.65067 0.402778 0.02 1.063795 43 29 1276 809 60 60 0 0 GG 12.333162 41 0 1157 0 KEEP + Prpf40b YES MNNG_1 chr16 19701055 19701055 A G exonic Lamp3 nonsynonymous SNV NM_177356:c.T470C:p.L157P exonic Lamp3 nonsynonymous SNV uc007ypb.1:c.T470C:p.L157P exonic ENSMUSG00000041247 nonsynonymous SNV ENSMUST00000081880:c.T470C:p.L157P 16qA3 NA NA chr16 19701055 CCAxGTT A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 105 0 0 13.443844 0.162162 0.02 -0.324476 31 6 883 177 60 60 0 0 AA 16.539792 55 0 1523 0 KEEP - Lamp3 NO MNNG_1 chr16 20560606 20560606 G A UTR3 Abcf3 NA NA UTR3 Abcf3 NA NA UTR3 ENSMUSG00000003234 NA NA 16qA3 NA NA chr16 20560606 AAGxACT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 62 0 0 20.970241 0.4 0.02 -0.175407 12 8 356 230 60 60 0 0 GG 9.325707 31 0 887 0 KEEP + Abcf3 YES MNNG_1 chr16 20654925 20654925 G A exonic Psmd2 nonsynonymous SNV NM_134101:c.G514A:p.E172K exonic Psmd2 nonsynonymous SNV uc007yqq.2:c.G514A:p.E172K exonic ENSMUSG00000006998 nonsynonymous SNV ENSMUST00000007212:c.G514A:p.E172K 16qB1 NA NA chr16 20654925 CAGxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.420782 0.423478 0.993634 35 0 0 27.047574 0.5 0.02 -0.184169 10 10 297 283 60 60 0 0 GG 3.609705 12 0 339 0 KEEP + Psmd2 YES MNNG_1 chr16 20675493 20675493 G C exonic Eif4g1 nonsynonymous SNV NM_001005331:c.G224C:p.G75A exonic Eif4g1 nonsynonymous SNV uc007yqt.1:c.G224C:p.G75A exonic ENSMUSG00000045983 nonsynonymous SNV ENSMUST00000151679:c.G104C:p.G35A 16qB1 NA NA chr16 20675493 CTGxCCC G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 118 1 0 37.063493 0.272727 0.02 1.409875 40 15 1144 439 60 60 0 0 GG 15.639799 52 0 1428 0 KEEP + Eif4g1 NO MNNG_1 chr16 20689424 20689424 G A intronic Eif4g1 NA NA intronic Eif4g1 NA NA intronic ENSMUSG00000045983 NA NA 16qB1 NA NA chr16 20689424 GGGxTGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999998 87 1 0 47.194882 0.461538 0.02 -0.341989 21 18 594 503 60 60 0 0 GG 10.224817 34 0 919 0 KEEP + Eif4g1 YES MNNG_1 chr16 20929393 20929393 G A intergenic "Chrd(dist=186936),2310042E22Rik(dist=223339)" NA NA intergenic "Chrd(dist=186936),2310042E22Rik(dist=223339)" NA NA ncRNA_exonic ENSMUSG00000078100 NA NA 16qB1 "Score=0.945596;Name=No.61869,chr16:21053766" NA chr16 20929393 ATTxTGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 97 0 18 45.749544 0.514286 0.02 -0.306891 17 18 490 477 60 60 0 0 GG 12.621348 42 0 1164 0 KEEP NA Chrd YES MNNG_1 chr16 22081917 22081917 G A exonic Igf2bp2 synonymous SNV NM_183029:c.C546T:p.A182A exonic Igf2bp2 synonymous SNV uc007yrz.1:c.C360T:p.A120A exonic ENSMUSG00000033581 synonymous SNV ENSMUST00000115379:c.C342T:p.A114A 16qB1 NA NA chr16 22081917 TCTxGCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 189 0 0 132.621874 0.544444 0.02 0.995516 41 49 1209 1362 60 60 0 0 GG 23.161441 77 0 2166 0 KEEP - Igf2bp2 YES MNNG_1 chr16 30573428 30573428 C T exonic Lsg1 nonsynonymous SNV NM_178069:c.G610A:p.A204T exonic Lsg1 nonsynonymous SNV uc007ywv.1:c.G610A:p.A204T exonic ENSMUSG00000022538 nonsynonymous SNV ENSMUST00000123286:c.G394A:p.A132T 16qB2 NA NA chr16 30573428 TGGxAGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 64 1 0 32.587211 0.631579 0.02 -0.166598 7 12 206 323 60 60 0 0 CC 10.227999 34 0 971 0 KEEP - Lsg1 YES MNNG_1 chr16 32144434 32144434 C T exonic Nrros nonsynonymous SNV NM_146069:c.G850A:p.D284N exonic Lrrc33 nonsynonymous SNV uc007yyg.1:c.G766A:p.D256N exonic ENSMUSG00000052384 nonsynonymous SNV ENSMUST00000115165:c.G694A:p.D232N 16qB2 NA NA chr16 32144434 GGTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888779 0.888875 0.999892 69 0 0 44.691325 0.425 0.02 -0.358773 23 17 634 484 60 60 0 0 CC 6.91831 23 0 651 0 KEEP - Nrros YES MNNG_1 chr16 33727494 33727494 C T exonic Heg1 nonsynonymous SNV NM_175256:c.C1871T:p.T624I exonic Heg1 nonsynonymous SNV uc007zai.1:c.C1871T:p.T624I exonic ENSMUSG00000075254 nonsynonymous SNV ENSMUST00000152782:c.C1871T:p.T624I 16qB3 NA NA chr16 33727494 CAAxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 238 3 0 133.031013 0.520408 0.02 0.827297 47 51 1334 1382 60 60 0 0 CC 31.27942 104 0 2856 0 KEEP + Heg1 YES MNNG_1 chr16 33750475 33750475 C T intronic Heg1 NA NA intronic Heg1 NA NA intronic ENSMUSG00000075254 NA NA 16qB3 NA NA chr16 33750475 TGGxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 77 1 0 33.545867 0.705882 0.02 -0.157828 5 12 142 323 60 60 0 0 CC 15.902971 53 0 1413 0 KEEP + Heg1 YES MNNG_1 chr16 33799474 33799474 C T exonic Muc13 nonsynonymous SNV NM_010739:c.C505T:p.P169S exonic Muc13 nonsynonymous SNV uc007zam.1:c.C505T:p.P169S exonic ENSMUSG00000022824 nonsynonymous SNV ENSMUST00000023520:c.C505T:p.P169S 16qB3 NA NA chr16 33799474 AGTxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 370 4 113 114.597861 0.438095 0.02 2.471345 59 46 1666 1240 54 54 0 0 CC 55.834822 186 0 5112 0 KEEP + Muc13 YES MNNG_1 chr16 34705140 34705140 T C intronic Ccdc14 NA NA intronic Ccdc14 NA NA intronic ENSMUSG00000022833 NA NA 16qB3 NA NA chr16 34705140 AGTxCCT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 110 2 0 52.021383 0.5 0.02 -0.342004 19 19 540 544 60 60 0 0 TT 17.744249 59 0 1626 0 KEEP + Ccdc14 NO MNNG_1 chr16 3984956 3984956 G A intronic Slx4 NA NA ncRNA_intronic mKIAA1784 NA NA intronic ENSMUSG00000039738 NA NA 16qA1 NA NA chr16 3984956 ACAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 108 0 0 63.454605 0.454545 0.02 1.213048 30 25 868 680 60 60 0 0 GG 12.621467 42 0 1172 0 KEEP - Slx4 YES MNNG_1 chr16 4037978 4037978 G A exonic Dnase1 nonsynonymous SNV NM_010061:c.G172A:p.V58I exonic Dnase1 nonsynonymous SNV uc007xzj.2:c.G172A:p.V58I exonic ENSMUSG00000005980 nonsynonymous SNV ENSMUST00000006136:c.G172A:p.V58I 16qA1 NA NA chr16 4037978 GCTxTTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 103 2 0 81.540206 0.638298 0.02 -0.412117 17 30 488 806 60 60 0 0 GG 12.332364 41 0 1146 0 KEEP + Dnase1 YES MNNG_1 chr16 44520536 44520536 C T exonic Boc nonsynonymous SNV NM_172506:c.G163A:p.E55K exonic Boc nonsynonymous SNV uc007zhl.1:c.G163A:p.E55K exonic ENSMUSG00000022687 nonsynonymous SNV ENSMUST00000023370:c.G163A:p.E55K 16qB4 NA NA chr16 44520536 GCTxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941738 0.941741 0.999997 84 0 0 77.647122 0.608696 0.02 -0.411811 18 28 525 777 60 60 0 0 CC 8.387527 28 0 766 0 KEEP - Boc YES MNNG_1 chr16 46071854 46071854 C T exonic Cd96 nonsynonymous SNV NM_032465:c.G883A:p.E295K exonic Cd96 nonsynonymous SNV uc007zjf.2:c.G883A:p.E295K exonic ENSMUSG00000022657 nonsynonymous SNV ENSMUST00000023336:c.G883A:p.E295K 16qB5 NA NA chr16 46071854 CTTxGTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 123 2 0 31.020594 0.428571 0.02 -0.254272 16 12 441 336 60 60 0 0 CC 20.696319 69 0 1811 0 KEEP - Cd96 YES MNNG_1 chr16 56647170 56647170 C T exonic Abi3bp nonsynonymous SNV NM_001014399:c.C1165T:p.P389S exonic Abi3bp nonsynonymous SNV uc012agr.1:c.C1090T:p.P364S exonic ENSMUSG00000035258 nonsynonymous SNV ENSMUST00000048280:c.C1090T:p.P364S 16qC1.1 NA NA chr16 56647170 AAGxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 130 0 0 34.50616 0.541667 0.02 -0.21044 11 13 325 355 60 60 0 0 CC 24.015453 80 0 2201 0 KEEP + Abi3bp YES MNNG_1 chr16 58507719 58507719 G A UTR5 St3gal6 NA NA UTR5 St3gal6 NA NA UTR5 ENSMUSG00000022747 NA NA 16qC1.2 NA NA chr16 58507719 CACxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 41 0 0 11.94228 0.333333 0.02 -0.140158 10 5 255 137 60 60 0 0 GG 6.314091 21 0 555 0 KEEP - St3gal6 YES MNNG_1 chr16 70433820 70433820 C T exonic Gbe1 synonymous SNV NM_028803:c.C460T:p.L154L exonic Gbe1 synonymous SNV uc007zqu.1:c.C460T:p.L154L exonic ENSMUSG00000022707 synonymous SNV ENSMUST00000023393:c.C460T:p.L154L 16qC2 NA NA chr16 70433820 ATAxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 76 0 0 35.010536 0.541667 0.02 -0.210445 11 13 310 360 60 60 0 0 CC 12.632788 42 0 1165 0 KEEP + Gbe1 YES MNNG_1 chr16 87357098 87357098 C T intronic N6amt1 NA NA intronic N6amt1 NA NA intronic ENSMUSG00000044442 NA NA 16qC3.3 NA NA chr16 87357098 CTGxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 90 3 0 23.029214 0.294118 0.02 -0.306777 24 10 656 272 60 60 0 0 CC 12.932732 43 0 1183 0 KEEP + N6amt1 YES MNNG_1 chr16 91025837 91025837 G A exonic Paxbp1 synonymous SNV NM_026110:c.C1833T:p.Y611Y exonic Gcfc1 synonymous SNV uc012aih.1:c.C1833T:p.Y611Y exonic ENSMUSG00000022974 synonymous SNV ENSMUST00000118522:c.C1833T:p.Y611Y 16qC3.3 NA NA chr16 91025837 GTAxTAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09972 0.099721 0.999988 40 0 0 12.272303 0.5 0.02 -0.087675 5 5 141 129 60 60 0 0 GG 8.120351 27 0 740 0 KEEP - Paxbp1 YES MNNG_1 chr16 91386268 91386268 C T exonic Ifnar2 nonsynonymous SNV NM_001110498:c.C179T:p.S60F exonic Ifnar2 nonsynonymous SNV uc007zxg.2:c.C179T:p.S60F exonic ENSMUSG00000022971 nonsynonymous SNV ENSMUST00000139107:c.C179T:p.S60F 16qC3.3 NA NA chr16 91386268 AGTxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 65 3 0 24.284351 0.473684 0.02 -0.166625 10 9 293 257 60 60 0 0 CC 11.130827 37 0 1063 0 KEEP + Ifnar2 YES MNNG_1 chr16 91662695 91662695 C T intronic Son NA NA intronic Son NA NA intronic ENSMUSG00000022961 NA NA 16qC3.3 NA NA chr16 91662695 GCTxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 131 2 0 53.128616 0.558824 0.02 -0.298128 15 19 425 542 60 60 0 0 CC 22.862508 76 0 2170 0 KEEP + Son YES MNNG_1 chr16 93841621 93841621 C T exonic Morc3 synonymous SNV NM_001045529:c.C45T:p.C15C exonic Morc3 synonymous SNV uc008aaa.2:c.C45T:p.C15C exonic ENSMUSG00000039456 synonymous SNV ENSMUST00000044068:c.C171T:p.C57C 16qC4 NA NA chr16 93841621 TTGxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054131 0.054137 0.999879 35 0 0 6.631127 0.375 0.02 -0.070136 5 3 144 75 60 60 0 0 CC 6.61708 22 0 608 0 KEEP + Morc3 YES MNNG_1 chr16 97726441 97726441 G A exonic Fam3b nonsynonymous SNV NM_020622:c.C8T:p.P3L exonic Fam3b nonsynonymous SNV uc008adj.1:c.C8T:p.P3L exonic ENSMUSG00000022938 nonsynonymous SNV ENSMUST00000049721:c.C8T:p.P3L 16qC4 NA NA chr16 97726441 ACTxGAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 88 0 0 43.704587 0.516129 0.02 -0.271857 15 16 433 454 60 60 0 0 GG 12.017166 40 0 1120 0 KEEP - Fam3b YES MNNG_1 chr16 98104888 98104888 C T exonic C2cd2 nonsynonymous SNV NM_174847:c.G824A:p.G275D exonic C2cd2 nonsynonymous SNV uc008ads.2:c.G824A:p.G275D exonic ENSMUSG00000045975 nonsynonymous SNV ENSMUST00000060801:c.G908A:p.G303D 16qC4 NA NA chr16 98104888 GCAxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.521029 0.522161 0.997832 41 1 0 34.13281 0.541667 0.02 -0.210019 11 13 286 351 60 60 0 0 CC 4.811211 16 0 426 0 KEEP - C2cd2 YES MNNG_1 chr17 10596159 10596159 G A UTR3 Pacrg NA NA UTR3 Pacrg NA NA UTR3 ENSMUSG00000037196 NA NA 17qA1 NA NA chr17 10596159 AGGxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 81 0 0 19.136254 0.225 0.02 -0.350721 31 9 906 241 60 60 0 0 GG 9.878895 33 0 889 0 KEEP - Pacrg YES MNNG_1 chr17 12591146 12591146 G A intronic Plg NA NA intronic Plg NA NA intronic ENSMUSG00000059481 NA NA 17qA1 NA NA chr17 12591146 GAGxATT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490511 0.490544 0.999931 51 0 0 23.407231 0.391304 0.02 -0.201717 14 9 413 258 60 60 0 0 GG 7.519629 25 0 706 0 KEEP + Plg YES MNNG_1 chr17 13967123 13967123 C T exonic Mllt4 nonsynonymous SNV NM_010806:c.C1564T:p.P522S exonic Mllt4 nonsynonymous SNV uc008ams.1:c.C1396T:p.P466S exonic ENSMUSG00000068036 nonsynonymous SNV ENSMUST00000150848:c.C1519T:p.P507S 17qA1 NA NA chr17 13967123 GGCxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 95 0 0 71.915573 0.574468 0.02 -0.411805 20 27 577 730 60 60 0 0 CC 11.731261 39 0 1096 0 KEEP + Mllt4 YES MNNG_1 chr17 15486699 15486699 C T intergenic "Gm5091(dist=108952),Gm10510(dist=1078)" NA NA intergenic "2210404J11Rik(dist=285503),Gm10510(dist=1078)" NA NA intergenic "ENSMUSG00000087655(dist=108952),ENSMUSG00000014773(dist=17619)" NA NA 17qA2 NA NA chr17 15486699 CTCxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.797437 0.800245 0.99649 56 2 0 46.57636 0.5 0.02 -0.298095 17 17 474 487 60 60 0 0 CC 4.510367 15 0 411 0 KEEP NA Gm5091 YES MNNG_1 chr17 15554583 15554583 C T intronic Fam120b NA NA intronic Fam120b NA NA intronic ENSMUSG00000014763 NA NA 17qA2 NA NA chr17 15554583 TTTxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 89 0 0 58.224232 0.538462 0.02 -0.350795 18 21 525 599 60 60 0 0 CC 13.231939 44 0 1243 0 KEEP + Fam120b YES MNNG_1 chr17 22685024 22685024 C T exonic Vmn2r111 nonsynonymous SNV NM_001104573:c.G2458A:p.A820T exonic Vmn2r111 nonsynonymous SNV uc009vbo.1:c.G2458A:p.A820T exonic ENSMUSG00000073445 nonsynonymous SNV ENSMUST00000092491:c.G2458A:p.A820T 17qA3.3 "Score=0.929251;Name=No.65563,chr17:22735210" NA chr17 22685024 CTGxACT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 407 4 4 40.468824 0.22619 0.02 0.860796 65 19 1855 509 60 60 0 0 CC 87.497244 291 0 8030 0 KEEP - Vmn2r111 YES MNNG_1 chr17 24133300 24133300 C T exonic Prss22 synonymous SNV NM_133731:c.G468A:p.R156R exonic Prss22 synonymous SNV uc012amb.1:c.G468A:p.R156R exonic ENSMUSG00000045027 synonymous SNV ENSMUST00000041649:c.G468A:p.R156R 17qA3.3 NA NA chr17 24133300 GATxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 255 4 0 152.511079 0.471545 0.02 2.303284 65 58 1901 1618 60 60 0 0 CC 27.959239 93 0 2594 0 KEEP - Prss22 YES MNNG_1 chr17 24381484 24381484 C T exonic Ccnf stopgain SNV NM_007634:c.G219A:p.W73X exonic Ccnf stopgain SNV uc008ave.1:c.G219A:p.W73X exonic ENSMUSG00000072082 stopgain SNV ENSMUST00000073425:c.G219A:p.W73X 17qA3.3 NA NA chr17 24381484 TGCxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.290363 0.292001 0.994391 35 0 0 12.831465 0.357143 0.02 -0.148759 9 5 238 144 60 60 0 0 CC 3.91058 13 0 368 0 KEEP - Ccnf YES MNNG_1 chr17 24388194 24388194 C T intronic Ccnf NA NA intronic Ccnf NA NA exonic ENSMUSG00000072082 nonsynonymous SNV ENSMUST00000115390:c.G58A:p.E20K 17qA3.3 NA NA chr17 24388194 CCTxCGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999997 89 0 0 57.170713 0.5 0.02 -0.368342 21 21 623 598 60 60 0 0 CC 9.624434 32 0 906 0 KEEP - Ccnf YES MNNG_1 chr17 24772663 24772663 C T exonic Nthl1 nonsynonymous SNV NM_008743:c.C644T:p.A215V exonic Nthl1 nonsynonymous SNV uc008axi.2:c.C644T:p.A215V exonic ENSMUSG00000041429 nonsynonymous SNV ENSMUST00000047611:c.C644T:p.A215V 17qA3.3 NA NA chr17 24772663 TGGxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.549368 0.552887 0.993634 43 2 0 31.998993 0.5 0.02 -0.219198 12 12 337 335 60 60 0 0 CC 3.609649 12 0 338 0 KEEP + Nthl1 YES MNNG_1 chr17 24842489 24842489 C T intronic Tbl3 NA NA intronic Tbl3 NA NA intronic ENSMUSG00000040688 NA NA 17qA3.3 NA NA chr17 24842489 ACAxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 154 2 0 100.234248 0.565217 0.02 0.985353 30 39 865 1022 70 70 0 0 CC 18.88005 63 0 1702 0 KEEP - Tbl3 YES MNNG_1 chr17 25162737 25162737 C T intronic Ift140 NA NA intronic Ift140 NA NA intronic ENSMUSG00000024169 NA NA 17qA3.3 NA NA chr17 25162737 ATTxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 111 2 0 67.379071 0.545455 0.02 -0.385883 20 24 586 691 60 60 0 0 CC 17.748576 59 0 1692 0 KEEP + Ift140 YES MNNG_1 chr17 25880898 25880898 C T intronic Mslnl NA NA intronic Mslnl NA NA intronic ENSMUSG00000041062 NA NA 17qA3.3 NA NA chr17 25880898 CCTxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 81 1 0 38.669889 0.384615 0.02 -0.342037 24 15 707 428 60 60 0 0 CC 8.423598 28 0 810 0 KEEP + Mslnl YES MNNG_1 chr17 25881530 25881530 G A exonic Mslnl synonymous SNV NM_177822:c.G1044A:p.L348L exonic Mslnl synonymous SNV uc008bbn.1:c.G1044A:p.L348L exonic ENSMUSG00000041062 synonymous SNV ENSMUST00000047098:c.G1044A:p.L348L 17qA3.3 NA NA chr17 25881530 CCTxGAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 91 0 0 49.214851 0.5 0.02 -0.42082 19 19 545 516 60 60 0 0 GG 11.427485 38 0 1043 0 KEEP + Mslnl YES MNNG_1 chr17 25996352 25996352 C T exonic Wdr90 synonymous SNV NM_001163766:c.G1056A:p.Q352Q exonic Wdr90 synonymous SNV uc012anm.1:c.G372A:p.Q124Q exonic ENSMUSG00000073434 synonymous SNV ENSMUST00000079461:c.G1056A:p.Q352Q 17qA3.3 NA NA chr17 25996352 TGCxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 164 4 0 116.9339 0.552632 0.02 1.109515 34 42 982 1196 60 60 0 0 CC 20.44638 68 0 1921 0 KEEP - Wdr90 YES MNNG_1 chr17 26080471 26080471 C T exonic Nhlrc4 synonymous SNV NM_001039038:c.G246A:p.R82R exonic Nhlrc4 synonymous SNV uc008bcu.1:c.G246A:p.R82R exonic ENSMUSG00000090113 synonymous SNV ENSMUST00000085027:c.G246A:p.R82R 17qA3.3 NA NA chr17 26080471 GTGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 114 3 0 99.576709 0.606557 0.02 1.151796 24 37 663 997 60 60 0 0 CC 12.329936 41 0 1131 0 KEEP - Nhlrc4 YES MNNG_1 chr17 26335059 26335059 C T exonic Pdia2 nonsynonymous SNV NM_001081070:c.G355A:p.G119R exonic Pdia2 nonsynonymous SNV uc008bdo.1:c.G355A:p.G119R exonic ENSMUSG00000024184 nonsynonymous SNV ENSMUST00000039113:c.G355A:p.G119R 17qA3.3 NA NA chr17 26335059 ACCxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973838 0.973965 0.999869 83 0 0 73.028644 0.509434 0.02 1.221767 26 27 742 761 60 60 0 0 CC 6.317523 21 0 604 0 KEEP - Pdia2 YES MNNG_1 chr17 27252715 27252715 C T exonic Itpr3 nonsynonymous SNV NM_080553:c.C6359T:p.T2120I exonic Itpr3 nonsynonymous SNV uc008bfi.2:c.C6359T:p.T2120I exonic ENSMUSG00000042644 nonsynonymous SNV ENSMUST00000049308:c.C6359T:p.T2120I 17qA3.3 NA NA chr17 27252715 ACAxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.666177 0.668523 0.99649 45 0 0 48.420424 0.62069 0.02 -0.254256 11 18 298 482 60 60 0 0 CC 4.509442 15 0 393 0 KEEP + Itpr3 YES MNNG_1 chr17 27252979 27252979 C T exonic Itpr3 nonsynonymous SNV NM_080553:c.C6521T:p.S2174F exonic Itpr3 nonsynonymous SNV uc008bfi.2:c.C6521T:p.S2174F exonic ENSMUSG00000042644 nonsynonymous SNV ENSMUST00000049308:c.C6521T:p.S2174F 17qA3.3 NA NA chr17 27252979 AGTxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 193 0 0 199.376145 0.585366 0.02 2.303156 51 72 1519 2013 60 60 0 0 CC 16.18 54 0 1488 0 KEEP + Itpr3 YES MNNG_1 chr17 27701115 27701115 G A exonic AI413582 synonymous SNV NM_001002895:c.C222T:p.L74L exonic AI413582 synonymous SNV uc008bpe.1:c.C222T:p.L74L exonic ENSMUSG00000062753 synonymous SNV ENSMUST00000154473:c.C222T:p.L74L 17qA3.3 NA NA chr17 27701115 AGAxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959857 0.959859 0.999998 91 2 0 77.416093 0.571429 0.02 -0.438492 21 28 626 786 60 60 0 0 GG 9.924245 33 0 941 0 KEEP - AI413582 YES MNNG_1 chr17 28023729 28023729 G A exonic Uhrf1bp1 synonymous SNV NM_001080769:c.G2283A:p.V761V exonic Uhrf1bp1 synonymous SNV uc008bpt.1:c.G2283A:p.V761V exonic ENSMUSG00000039512 synonymous SNV ENSMUST00000114849:c.G2283A:p.V761V 17qA3.3 NA NA chr17 28023729 TGTxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 176 0 0 94.47302 0.475 0.02 0.895867 42 38 1227 1004 60 60 0 0 GG 23.746042 79 0 2194 0 KEEP + Uhrf1bp1 YES MNNG_1 chr17 30991903 30991903 G A intronic Dnah8 NA NA intronic Dnahc8 NA NA intronic ENSMUSG00000033826 NA NA 17qA3.3 NA NA chr17 30991903 TGGxCGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 180 0 0 41.703449 0.260274 0.02 1.047221 54 19 1500 508 60 60 0 0 GG 21.040541 70 0 1883 0 KEEP + Dnah8 YES MNNG_1 chr17 31695663 31695663 G A intergenic "Ndufv3(dist=27393),Pknox1(dist=6055)" NA NA ncRNA_exonic AK019514 NA NA ncRNA_exonic ENSMUSG00000013562 NA NA 17qB1 NA NA chr17 31695663 TTGxAAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 53 0 0 20.599237 0.421053 0.02 -0.166614 11 8 313 224 60 60 0 0 GG 7.219492 24 0 680 0 KEEP + Ndufv3 YES MNNG_1 chr17 31732183 31732183 C G exonic Pknox1 nonsynonymous SNV NM_016670:c.C536G:p.A179G exonic Pknox1 nonsynonymous SNV uc008bvj.2:c.C536G:p.A179G exonic ENSMUSG00000006705 nonsynonymous SNV ENSMUST00000097352:c.C536G:p.A179G 17qB1 NA NA chr17 31732183 GTGxCAT C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 104 0 0 23.613281 0.196078 0.02 1.346287 41 10 1171 298 60 60 0 0 CC 12.028966 40 0 1092 0 KEEP + Pknox1 NO MNNG_1 chr17 32193682 32193682 G A exonic Rrp1b synonymous SNV NM_001163734:c.G954A:p.G318G exonic Rrp1b synonymous SNV uc008bvu.2:c.G954A:p.G318G exonic ENSMUSG00000058392 synonymous SNV ENSMUST00000081339:c.G1257A:p.G419G 17qB1 NA NA chr17 32193682 TGGxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999999 70 0 0 44.448638 0.586207 0.02 -0.254179 12 17 345 449 60 60 0 0 GG 10.501965 35 0 966 0 KEEP + Rrp1b YES MNNG_1 chr17 32335696 32335696 G A exonic Brd4 nonsynonymous SNV NM_020508:c.C3616T:p.P1206S exonic Brd4 nonsynonymous SNV uc008bwa.2:c.C3616T:p.P1206S exonic ENSMUSG00000024002 nonsynonymous SNV ENSMUST00000003726:c.C3619T:p.P1207S 17qB1 NA NA chr17 32335696 GGGxTGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 85 0 0 62.332134 0.533333 0.02 -0.394264 21 24 579 644 60 60 0 0 GG 11.118552 37 0 1000 0 KEEP - Brd4 YES MNNG_1 chr17 33273925 33273925 G A exonic Morc2b nonsynonymous SNV NM_177719:c.C1817T:p.P606L exonic Morc2b nonsynonymous SNV uc008byc.2:c.C1817T:p.P606L exonic ENSMUSG00000048602 nonsynonymous SNV ENSMUST00000087649:c.C1817T:p.P606L 17qB1 NA NA chr17 33273925 GCAxGAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 87 0 0 21.957971 0.321429 0.02 -0.254273 19 9 548 253 60 60 0 0 GG 13.537236 45 0 1288 0 KEEP - Morc2b YES MNNG_1 chr17 33787206 33787206 C T exonic Hnrnpm nonsynonymous SNV NM_029804:c.G1308A:p.M436I exonic Hnrnpm nonsynonymous SNV uc008bzg.2:c.G1254A:p.M418I exonic ENSMUSG00000059208 nonsynonymous SNV ENSMUST00000114385:c.G1308A:p.M436I 17qB1 NA NA chr17 33787206 GCCxATG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999947 0.999948 0.999999 142 2 0 85.643766 0.364583 0.02 0.934278 61 35 1776 963 60 60 0 0 CC 10.517245 35 0 961 0 KEEP - Hnrnpm YES MNNG_1 chr17 34164934 34164934 G A intronic H2-Ke6 NA NA UTR3 Slc39a7 NA NA exonic ENSMUSG00000073422 nonsynonymous SNV ENSMUST00000114303:c.C59T:p.P20L 17qB1 NA NA chr17 34164934 GAGxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.548763 0.552887 0.99254 40 0 0 34.880171 0.52 0.02 -0.219225 12 13 350 362 60 60 0 0 GG 2.706936 9 0 248 0 KEEP - H2-Ke6 YES MNNG_1 chr17 34252356 34252356 G A exonic Brd2 nonsynonymous SNV NM_001204973:c.C773T:p.P258L exonic Brd2 nonsynonymous SNV uc008cbi.1:c.C773T:p.P258L exonic ENSMUSG00000024335 nonsynonymous SNV ENSMUST00000095347:c.C635T:p.P212L 17qB1 NA NA chr17 34252356 GGGxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818365 0.818465 0.999879 62 0 0 30.854667 0.342857 0.02 -0.315656 23 12 657 349 60 60 0 0 GG 6.315257 21 0 574 0 KEEP - Brd2 YES MNNG_1 chr17 34349180 34349180 G T exonic Tap2 nonsynonymous SNV NM_011530:c.G1146T:p.M382I exonic Tap2 nonsynonymous SNV uc008cbx.2:c.G1146T:p.M382I exonic "ENSMUSG00000024339,ENSMUSG00000081512" nonsynonymous SNV ENSMUST00000025197:c.G1146T:p.M382I 17qB1 NA NA chr17 34349180 GATxGCC G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 368 2 0 196.166423 0.385 0.02 5.001502 123 77 3548 2173 60 60 0 0 GG 30.930914 103 0 2888 0 KEEP + Tap2 NO MNNG_1 chr17 34713531 34713531 G A intronic Notch4 NA NA intronic "IAP,Notch4" NA NA intronic ENSMUSG00000015468 NA NA 17qB1 NA NA chr17 34713531 CCAxACC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992091 0.992094 0.999997 106 0 0 100.210102 0.612903 0.02 1.143062 24 38 694 1001 60 60 0 0 GG 9.32498 31 0 873 0 KEEP + Notch4 YES MNNG_1 chr17 34750871 34750871 G A exonic Egfl8 nonsynonymous SNV NM_152922:c.C689T:p.A230V exonic Egfl8 nonsynonymous SNV uc008cdb.2:c.C689T:p.A230V exonic ENSMUSG00000015467 nonsynonymous SNV ENSMUST00000015611:c.C689T:p.A230V 17qB1 NA NA chr17 34750871 GTGxCCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 211 1 0 100.528449 0.323077 0.02 2.233643 88 42 2515 1160 60 60 0 0 GG 19.815382 66 0 1777 0 KEEP - Egfl8 YES MNNG_1 chr17 35064893 35064893 G A intronic Slc44a4 NA NA intronic Slc44a4 NA NA intronic ENSMUSG00000007034 NA NA 17qB1 NA NA chr17 35064893 TAGxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 260 4 0 127.638519 0.383459 0.02 2.412547 82 51 2366 1418 60 60 0 0 GG 27.671419 92 0 2562 0 KEEP + Slc44a4 YES MNNG_1 chr17 35141863 35141863 G A intronic Vars NA NA intronic Vars NA NA intronic ENSMUSG00000007029 NA NA 17qB1 NA NA chr17 35141863 CGGxAGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 167 0 0 58.999833 0.369863 0.02 1.059294 46 27 1335 672 60 60 0 0 GG 18.649461 62 0 1763 0 KEEP + Vars YES MNNG_1 chr17 35264057 35264057 G A UTR5 D17H6S53E NA NA upstream D17H6S53E NA NA UTR5 ENSMUSG00000043311 NA NA 17qB1 NA NA chr17 35264057 TCAxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641278 0.641347 0.999892 60 0 0 47.257341 0.607143 0.02 -0.245526 11 17 313 473 60 60 0 0 GG 6.918359 23 0 646 0 KEEP NA D17H6S53E YES MNNG_1 chr17 35290974 35290974 G A intronic Prrc2a NA NA intronic Prrc2a NA NA intronic ENSMUSG00000024393 NA NA 17qB1 NA NA chr17 35290974 GAGxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 200 0 0 96.632615 0.436782 0.02 0.923539 49 38 1421 1044 60 60 0 0 GG 25.545101 85 0 2296 0 KEEP - Prrc2a YES MNNG_1 chr17 35298856 35298856 T A splicing "Prrc2a(NM_001199044:exon5:c.291-2A>T,NM_020027:exon5:c.291-2A>T)" NA NA splicing "Prrc2a(uc008cgj.2:exon5:c.291-2A>T,uc008cgk.2:exon5:c.291-2A>T)" NA NA splicing "ENSMUSG00000024393(ENSMUST00000025253:exon5:c.291-2A>T,ENSMUST00000171992:exon4:c.291-2A>T,ENSMUST00000174805:exon4:c.126-2A>T)" NA NA 17qB1 NA NA chr17 35298856 AACxGGG T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 210 6 0 100.254711 0.363636 0.02 2.605128 70 40 1987 1125 60 60 0 0 TT 21.647734 72 0 1955 0 KEEP - Prrc2a NO MNNG_1 chr17 35531269 35531269 G A ncRNA_intronic H2-Q5 NA NA intronic H2-Q8 NA NA ncRNA_intronic ENSMUSG00000055413 NA NA 17qB1 "Score=0.969905;Name=No.65659,chr17:35558518" NA chr17 35531269 GGAxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 109 3 15 23.454764 0.297297 0.02 -0.341447 26 11 758 280 60 60 0 0 GG 15.626432 52 0 1414 0 KEEP + H2-Q5 YES MNNG_1 chr17 36096669 36096669 G A intronic Abcf1 NA NA intronic Abcf1 NA NA intronic ENSMUSG00000038762 NA NA 17qB1 NA NA chr17 36096669 CTGxGGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.421102 0.423478 0.994391 39 0 0 17.434582 0.333333 0.02 -0.184165 14 7 404 199 60 60 0 0 GG 3.910543 13 0 368 0 KEEP - Abcf1 YES MNNG_1 chr17 36178676 36178676 G A intronic "H2-T22,H2-T9" NA NA intronic "H2-T10,H2-T22,H2-T23,H2-T9" NA NA ncRNA_intronic ENSMUSG00000092365 NA NA 17qB1 "Score=0.951462;Name=No.65666,chr17:36245854" NA chr17 36178676 CGAxTAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888837 0.888875 0.999957 76 0 4 54.675269 0.512195 0.02 -0.359516 20 21 563 570 60 60 0 0 GG 8.420985 28 0 762 0 KEEP - H2-T22 YES MNNG_1 chr17 36950078 36950078 G A exonic H2-M10.6 nonsynonymous SNV NM_201611:c.G488A:p.G163D exonic H2-M10.6 nonsynonymous SNV uc008clf.2:c.G488A:p.G163D exonic ENSMUSG00000037130 nonsynonymous SNV ENSMUST00000041398:c.G488A:p.G163D 17qB1 NA NA chr17 36950078 TAGxTGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 122 0 0 56.522883 0.538462 0.02 -0.341994 18 21 511 582 60 60 0 0 GG 20.71419 69 0 1856 0 KEEP + H2-M10.6 YES MNNG_1 chr17 3695575 3695575 C T exonic Nox3 stopgain SNV NM_198958:c.G57A:p.W19X exonic Nox3 stopgain SNV uc008aev.1:c.G117A:p.W39X exonic ENSMUSG00000023802 stopgain SNV ENSMUST00000024565:c.G117A:p.W39X 17qA1 NA NA chr17 3695575 CAGxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12042 0.120436 0.999869 36 0 0 16.737685 0.6 0.02 -0.096452 4 6 117 168 60 60 0 0 CC 6.314379 21 0 574 0 KEEP - Nox3 YES MNNG_1 chr17 37700527 37700527 G A exonic Olfr112 nonsynonymous SNV NM_001013575:c.C728T:p.P243L exonic Olfr112 nonsynonymous SNV uc008cnd.2:c.C728T:p.P243L exonic ENSMUSG00000051611 nonsynonymous SNV ENSMUST00000085548:c.C728T:p.P243L 17qB1 NA NA chr17 37700527 TGGxGCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 184 0 0 35.903998 0.424242 0.02 -0.28936 19 14 560 390 60 60 0 0 GG 37.234289 124 0 3401 0 KEEP - Olfr112 YES MNNG_1 chr17 43731263 43731263 G A exonic Pla2g7 synonymous SNV NM_013737:c.G132A:p.V44V exonic Pla2g7 synonymous SNV uc008cpe.1:c.G132A:p.V44V exonic ENSMUSG00000023913 synonymous SNV ENSMUST00000024706:c.G132A:p.V44V 17qB3 NA NA chr17 43731263 GGTxATG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 140 0 0 49.977965 0.428571 0.02 1.053155 28 21 817 545 60 60 0 0 GG 22.559713 75 0 2137 0 KEEP + Pla2g7 YES MNNG_1 chr17 43801204 43801204 G A exonic Slc25a27 synonymous SNV NM_028711:c.C114T:p.P38P exonic Slc25a27 synonymous SNV uc008cpk.1:c.C114T:p.P38P exonic ENSMUSG00000023912 synonymous SNV ENSMUST00000024705:c.C114T:p.P38P 17qB3 NA NA chr17 43801204 GAGxGGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 64 0 0 29.499601 0.44 0.02 -0.219242 14 11 397 317 70 60 0 0 GG 9.625368 32 0 893 0 KEEP - Slc25a27 YES MNNG_1 chr17 45724537 45724537 G A exonic Slc29a1 nonsynonymous SNV NM_022880:c.C941T:p.S314F exonic Slc29a1 nonsynonymous SNV uc008cra.2:c.C941T:p.S314F exonic ENSMUSG00000023942 nonsynonymous SNV ENSMUST00000163492:c.C941T:p.S314F 17qB3 NA NA chr17 45724537 CTGxATT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 65 0 0 29.93332 0.52381 0.02 -0.192939 10 11 300 310 60 60 0 0 GG 9.625344 32 0 900 0 KEEP - Slc29a1 YES MNNG_1 chr17 45726352 45726352 G A intronic Slc29a1 NA NA intronic Slc29a1 NA NA intronic ENSMUSG00000023942 NA NA 17qB3 NA NA chr17 45726352 GCAxTTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 195 2 0 155.624494 0.540541 0.02 2.417358 51 60 1468 1603 60 60 0 0 GG 16.842585 56 0 1558 0 KEEP - Slc29a1 YES MNNG_1 chr17 46583677 46583677 G A exonic Ttbk1 synonymous SNV NM_001162864:c.C2979T:p.G993G exonic Ttbk1 synonymous SNV uc008csx.2:c.C2979T:p.G993G exonic ENSMUSG00000015599 synonymous SNV ENSMUST00000047034:c.C2979T:p.G993G 17qC NA NA chr17 46583677 AGGxCCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 201 2 0 105.770132 0.413462 0.02 2.453058 61 43 1751 1159 60 60 0 0 GG 20.724008 69 0 1852 0 KEEP - Ttbk1 YES MNNG_1 chr17 46639031 46639031 G A intronic Cul9 NA NA exonic Cul9 nonsynonymous SNV uc008ctd.1:c.C4006T:p.L1336F ncRNA_intronic ENSMUSG00000086673 NA NA 17qC NA NA chr17 46639031 GGAxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 159 3 0 127.513309 0.539326 0.02 0.897502 41 48 1176 1313 60 60 0 0 GG 13.536933 45 0 1285 0 KEEP - Cul9 YES MNNG_1 chr17 46680532 46680532 G A exonic Cul9 synonymous SNV NM_001081335:c.C192T:p.L64L exonic Cul9 synonymous SNV uc008cta.1:c.C192T:p.L64L exonic ENSMUSG00000040327 synonymous SNV ENSMUST00000066026:c.C192T:p.L64L 17qC NA NA chr17 46680532 CATxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 189 2 0 161.254373 0.530435 0.02 2.373293 54 61 1580 1667 60 60 0 0 GG 17.749035 59 0 1692 0 KEEP - Cul9 YES MNNG_1 chr17 46819763 46819763 G A exonic Mea1 nonsynonymous SNV NM_001277309:c.G592A:p.E198K exonic Mea1 nonsynonymous SNV uc008cty.1:c.G469A:p.E157K exonic ENSMUSG00000002768 nonsynonymous SNV ENSMUST00000002845:c.G469A:p.E157K 17qC NA NA chr17 46819763 TGGxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 60 0 0 38.882443 0.538462 0.02 -0.228021 12 14 354 400 60 60 0 0 GG 8.422847 28 0 795 0 KEEP + Mea1 YES MNNG_1 chr17 47082012 47082012 G A exonic Ubr2 nonsynonymous SNV NM_001177374:c.C4069T:p.P1357S exonic Ubr2 nonsynonymous SNV uc012aut.1:c.C1609T:p.P537S exonic ENSMUSG00000023977 nonsynonymous SNV ENSMUST00000113335:c.C4069T:p.P1357S 17qC NA NA chr17 47082012 GAGxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077327 0.077336 0.999892 36 0 0 9.922197 0.444444 0.02 -0.078916 5 4 140 107 60 60 0 0 GG 6.917652 23 0 633 0 KEEP - Ubr2 YES MNNG_1 chr17 47836562 47836562 G A exonic Frs3 stopgain SNV NM_144939:c.G171A:p.W57X exonic Frs3 stopgain SNV uc008cvz.1:c.G171A:p.W57X exonic ENSMUSG00000023266 stopgain SNV ENSMUST00000024034:c.G171A:p.W57X 17qC NA NA chr17 47836562 CTGxCCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.636904 0.641347 0.993072 46 0 0 33.105952 0.464286 0.02 -0.245229 15 13 417 353 60 60 0 0 GG 3.308085 11 0 300 0 KEEP + Frs3 YES MNNG_1 chr17 48227366 48227366 G A exonic 1700067P10Rik nonsynonymous SNV NM_026625:c.G220A:p.V74I exonic 1700067P10Rik nonsynonymous SNV uc008cwr.1:c.G193A:p.V65I exonic ENSMUSG00000021545 nonsynonymous SNV ENSMUST00000022028:c.G220A:p.V74I 17qC NA NA chr17 48227366 CTAxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353922 0.353947 0.999931 52 0 0 14.21636 0.315789 0.02 -0.166612 13 6 372 165 60 60 0 0 GG 7.519125 25 0 703 0 KEEP + 1700067P10Rik YES MNNG_1 chr17 5332490 5332490 C T exonic Arid1b nonsynonymous SNV NM_001085355:c.C3851T:p.P1284L exonic Arid1b nonsynonymous SNV uc008aey.1:c.C3851T:p.P1284L exonic ENSMUSG00000069729 nonsynonymous SNV ENSMUST00000092723:c.C3848T:p.P1283L 17qA1 NA NA chr17 5332490 TGCxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16171 0.162467 0.995343 31 0 0 18.842332 0.538462 0.02 -0.113953 6 7 165 194 60 60 0 0 CC 4.21138 14 0 396 0 KEEP + Arid1b YES MNNG_1 chr17 5339327 5339327 C T exonic Arid1b nonsynonymous SNV NM_001085355:c.C4991T:p.A1664V exonic Arid1b nonsynonymous SNV uc008aey.1:c.C4991T:p.A1664V exonic ENSMUSG00000069729 nonsynonymous SNV ENSMUST00000092723:c.C4988T:p.A1663V 17qA1 NA NA chr17 5339327 TCGxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 114 0 0 51.128197 0.487179 0.02 -0.350747 20 19 568 538 60 60 0 0 CC 17.746074 59 0 1639 0 KEEP + Arid1b YES MNNG_1 chr17 55991473 55991473 G A exonic Emr4 nonsynonymous SNV NM_139138:c.G1892A:p.G631D exonic Emr4 nonsynonymous SNV uc008dae.2:c.G1892A:p.G631D exonic ENSMUSG00000032915 nonsynonymous SNV ENSMUST00000025004:c.G1892A:p.G631D 17qD NA NA chr17 55991473 AGGxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 185 1 0 58.818258 0.377049 0.02 1.160271 38 23 1098 654 60 60 0 0 GG 27.368072 91 0 2530 0 KEEP + Emr4 YES MNNG_1 chr17 56103978 56103978 G A exonic Ccdc94 nonsynonymous SNV NM_028381:c.G475A:p.D159N exonic Ccdc94 nonsynonymous SNV uc008dak.1:c.G475A:p.D159N exonic ENSMUSG00000003208 nonsynonymous SNV ENSMUST00000086869:c.G475A:p.D159N 17qD NA NA chr17 56103978 AAAxACC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780565 0.78106 0.999366 58 2 0 41.612754 0.470588 0.02 -0.298087 18 16 531 442 60 60 0 0 GG 5.114015 17 0 486 0 KEEP + Ccdc94 YES MNNG_1 chr17 56112275 56112275 G A exonic Shd nonsynonymous SNV NM_001159523:c.G347A:p.S116N exonic Shd nonsynonymous SNV uc008dal.2:c.G344A:p.S115N exonic ENSMUSG00000039154 nonsynonymous SNV ENSMUST00000044216:c.G347A:p.S116N 17qD NA NA chr17 56112275 ACAxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 132 0 0 88.551459 0.507463 0.02 1.107868 33 34 923 925 60 60 0 0 GG 14.436257 48 0 1314 0 KEEP + Shd YES MNNG_1 chr17 56155386 56155386 G A exonic Mpnd stopgain SNV NM_026530:c.G1344A:p.W448X exonic Mpnd stopgain SNV uc008dap.1:c.G1344A:p.W448X exonic ENSMUSG00000003199 stopgain SNV ENSMUST00000162883:c.G1194A:p.W398X 17qD NA NA chr17 56155386 CTGxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999999 0.999999 1 248 1 0 178.581686 0.536585 0.02 2.311848 57 66 1672 1840 60 60 0 0 GG 25.569297 85 0 2413 0 KEEP + Mpnd YES MNNG_1 chr17 56272169 56272169 G A exonic Sema6b nonsynonymous SNV NM_001130456:c.C94T:p.P32S exonic Sema6b nonsynonymous SNV uc008dbd.2:c.C94T:p.P32S exonic ENSMUSG00000001227 nonsynonymous SNV ENSMUST00000001256:c.C94T:p.P32S 17qD NA NA chr17 56272169 GTGxTTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 213 4 0 107.992653 0.371901 0.02 2.330051 76 45 2103 1212 60 60 0 0 GG 19.222569 64 0 1713 0 KEEP - Sema6b YES MNNG_1 chr17 56342304 56342304 G A exonic Dpp9 nonsynonymous SNV NM_172624:c.C944T:p.A315V exonic Dpp9 nonsynonymous SNV uc008dbi.2:c.C425T:p.A142V exonic ENSMUSG00000001229 nonsynonymous SNV ENSMUST00000038794:c.C944T:p.A315V 17qD NA NA chr17 56342304 AGGxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 191 1 0 102.656836 0.47561 0.02 0.967462 43 39 1220 1087 60 60 0 0 GG 21.652505 72 0 1964 0 KEEP - Dpp9 YES MNNG_1 chr17 56765982 56765982 G A exonic Lonp1 synonymous SNV NM_028782:c.C315T:p.V105V exonic Lonp1 synonymous SNV uc008dcp.1:c.C315T:p.V105V exonic ENSMUSG00000041168 synonymous SNV ENSMUST00000047226:c.C315T:p.V105V 17qD NA NA chr17 56765982 CGGxACG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941656 0.941741 0.999909 83 0 0 58.440047 0.468085 0.02 -0.41079 25 22 689 620 60 60 0 0 GG 7.219726 24 0 683 0 KEEP - Lonp1 YES MNNG_1 chr17 57034288 57034288 G A exonic Mllt1 nonsynonymous SNV NM_022328:c.C1409T:p.P470L exonic Mllt1 nonsynonymous SNV uc008ddk.1:c.C1409T:p.P470L exonic ENSMUSG00000024212 nonsynonymous SNV ENSMUST00000025053:c.C1409T:p.P470L 17qD NA NA chr17 57034288 TCGxGCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 259 2 0 243.501305 0.615942 0.02 2.360507 53 85 1488 2428 60 60 0 0 GG 25.557147 85 0 2323 0 KEEP - Mllt1 YES MNNG_1 chr17 57045234 57045234 G A exonic Mllt1 synonymous SNV NM_022328:c.C321T:p.N107N exonic Mllt1 synonymous SNV uc008ddk.1:c.C321T:p.N107N exonic ENSMUSG00000024212 synonymous SNV ENSMUST00000025053:c.C321T:p.N107N 17qD NA NA chr17 57045234 CAGxTTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 97 1 0 43.634386 0.409091 0.02 -0.394284 26 18 736 480 60 60 0 0 GG 12.632226 42 0 1158 0 KEEP - Mllt1 YES MNNG_1 chr17 57066445 57066445 G A exonic Mllt1 synonymous SNV NM_022328:c.C163T:p.L55L exonic Mllt1 synonymous SNV uc008ddk.1:c.C163T:p.L55L exonic ENSMUSG00000024212 synonymous SNV ENSMUST00000025053:c.C163T:p.L55L 17qD NA NA chr17 57066445 GCAxCCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934391 0.934492 0.999892 78 0 0 36.916282 0.333333 0.02 -0.40343 30 15 890 422 60 60 0 0 GG 6.898697 23 0 635 0 KEEP - Mllt1 YES MNNG_1 chr17 57384493 57384493 G A exonic Gpr108 synonymous SNV NM_030084:c.C339T:p.S113S exonic Gpr108 synonymous SNV uc008deh.1:c.C339T:p.S113S exonic ENSMUSG00000005823 synonymous SNV ENSMUST00000005975:c.C339T:p.S113S 17qD NA NA chr17 57384493 GTTxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 158 2 0 45.696131 0.350877 0.02 1.088823 37 20 1056 522 60 60 0 0 GG 23.123858 77 0 2118 0 KEEP - Gpr108 YES MNNG_1 chr17 57541990 57541990 G A exonic Emr1 nonsynonymous SNV NM_010130:c.G308A:p.G103E exonic Emr1 nonsynonymous SNV uc008det.2:c.G308A:p.G103E exonic ENSMUSG00000004730 nonsynonymous SNV ENSMUST00000004850:c.G308A:p.G103E 17qD NA NA chr17 57541990 TGGxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 63 0 0 17.635533 0.333333 0.02 -0.192483 14 7 397 201 60 60 0 0 GG 11.124877 37 0 1023 0 KEEP + Emr1 YES MNNG_1 chr17 58153249 58153249 G A exonic Cntnap5c nonsynonymous SNV NM_001081653:c.G392A:p.G131E exonic Cntnap5c nonsynonymous SNV uc008dew.1:c.G392A:p.G131E exonic ENSMUSG00000038048 nonsynonymous SNV ENSMUST00000076038:c.G392A:p.G131E 17qD NA NA chr17 58153249 TAGxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999997 52 0 0 16.449067 0.5 0.02 -0.105241 6 6 175 172 60 60 0 0 GG 9.321977 31 0 867 0 KEEP + Cntnap5c YES MNNG_1 chr17 6466110 6466110 G A intergenic "Tmem181b-ps(dist=15968),Dynlt1f(dist=134686)" NA NA exonic Tmem181a synonymous SNV uc008agu.2:c.C69T:p.V23V exonic ENSMUSG00000079733 synonymous SNV ENSMUST00000115771:c.C186T:p.V62V 17qA1 "Score=0.991392;Name=No.65272,chr17:6219164" NA chr17 6466110 GAAxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 258 5 34 15.545135 0.097561 0.02 0.976482 74 8 2153 231 57 40 0 0 GG 36.702082 122 0 3516 0 KEEP - Tmem181b-ps YES MNNG_1 chr17 66202070 66202070 C T exonic Ralbp1 nonsynonymous SNV NM_001198949:c.G1537A:p.E513K exonic Ralbp1 nonsynonymous SNV uc012awi.1:c.G1375A:p.E459K exonic ENSMUSG00000024096 nonsynonymous SNV ENSMUST00000168286:c.G1375A:p.E459K 17qE1.1 NA NA chr17 66202070 TCTxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 124 4 0 47.357021 0.387755 0.02 -0.429452 30 19 860 525 60 60 0 0 CC 15.635703 52 0 1474 0 KEEP - Ralbp1 YES MNNG_1 chr17 66493493 66493493 C T intronic Ddx11 NA NA intronic Ddx11 NA NA intronic ENSMUSG00000035842 NA NA 17qE1.1 NA NA chr17 66493493 ATTxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739203 0.739671 0.999366 53 0 0 28.291562 0.354839 0.02 -0.280648 20 11 587 318 60 60 0 0 CC 5.112989 17 0 481 0 KEEP + Ddx11 YES MNNG_1 chr17 67981288 67981288 G A exonic Lrrc30 synonymous SNV NM_001033340:c.C636T:p.I212I exonic Lrrc30 synonymous SNV uc008dkf.1:c.C636T:p.I212I exonic ENSMUSG00000073375 synonymous SNV ENSMUST00000097290:c.C636T:p.I212I 17qE1.1 NA NA chr17 67981288 GAAxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 142 1 0 83.918984 0.576923 0.02 1.239196 22 30 648 850 60 60 0 0 GG 20.109851 67 0 1903 0 KEEP - Lrrc30 YES MNNG_1 chr17 6919720 6919720 C T intronic Sytl3 NA NA intronic Sytl3 NA NA intronic ENSMUSG00000041831 NA NA 17qA1 "Score=0.986694;Name=No.65280,chr17:6364695" NA chr17 6919720 CTGxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 0.999999 65 0 0 23.483701 0.473684 0.02 -0.166611 10 9 282 249 60 60 0 0 CC 10.79191 36 0 953 0 KEEP + Sytl3 YES MNNG_1 chr17 72100709 72100709 C T exonic BC027072 nonsynonymous SNV NM_146082:c.G1312A:p.V438I exonic BC027072 nonsynonymous SNV uc008dmv.1:c.G1312A:p.V438I exonic ENSMUSG00000044375 nonsynonymous SNV ENSMUST00000057405:c.G1312A:p.V438I 17qE1.3 NA NA chr17 72100709 TGAxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 303 6 0 141.444138 0.376623 0.02 3.718304 96 58 2764 1581 60 60 0 0 CC 27.974932 93 0 2635 0 KEEP - BC027072 YES MNNG_1 chr17 73675658 73675658 G A intronic Capn13 NA NA intronic Capn13 NA NA intronic ENSMUSG00000043705 NA NA 17qE2 NA NA chr17 73675658 AAAxGAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 52 1 0 32.898041 0.5 0.02 -0.210482 12 12 352 344 60 60 0 0 GG 6.906512 23 0 633 0 KEEP - Capn13 YES MNNG_1 chr17 75014671 75014671 G A splicing Birc6(NM_007566:exon31:c.6634+1G>A) NA NA exonic;splicing "Birc6;Birc6(uc008dof.1:exon31:c.6805+1G>A,uc012axh.1:exon6:c.1027+1G>A)" nonsynonymous SNV uc008dog.1:c.G2648A:p.G883D exonic ENSMUSG00000024073 nonsynonymous SNV ENSMUST00000024879:c.G6551A:p.G2184D 17qE2 NA NA chr17 75014671 ATGxTAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099658 0.099721 0.999366 29 0 0 19.580936 0.7 0.02 -0.08767 3 7 87 189 60 60 0 0 GG 5.113028 17 0 468 0 KEEP + Birc6 YES MNNG_1 chr17 75752203 75752203 G A intronic Ltbp1 NA NA intronic Ltbp1 NA NA intronic ENSMUSG00000001870 NA NA 17qE2 NA NA chr17 75752203 GGAxGGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.663648 0.668523 0.992708 43 0 0 44.700649 0.615385 0.02 -0.245513 10 16 291 446 60 60 0 0 GG 3.007978 10 0 280 0 KEEP + Ltbp1 YES MNNG_1 chr17 75891277 75891277 T A exonic Rasgrp3 nonsynonymous SNV NM_001166493:c.T47A:p.L16H exonic Rasgrp3 nonsynonymous SNV uc012axi.1:c.T47A:p.L16H exonic ENSMUSG00000071042 nonsynonymous SNV ENSMUST00000164192:c.T47A:p.L16H 17qE2 NA NA chr17 75891277 TTCxCAG T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 79 0 0 35.26623 0.466667 0.02 -0.262974 16 14 454 376 60 60 0 0 TT 11.430182 38 0 1061 0 KEEP + Rasgrp3 NO MNNG_1 chr17 80027116 80027116 C T intronic Rmdn2 NA NA exonic 4921513D11Rik nonsynonymous SNV uc008dqa.1:c.C332T:p.T111I exonic ENSMUSG00000066944 nonsynonymous SNV ENSMUST00000086570:c.C332T:p.T111I 17qE3 NA NA chr17 80027116 TCAxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 54 0 0 17.675639 0.4375 0.02 -0.14031 9 7 263 191 60 60 0 0 CC 9.597429 32 0 871 0 KEEP + Rmdn2 YES MNNG_1 chr17 84839334 84839334 C T splicing Thada(NM_183021:exon15:c.2160+1G>A) NA NA splicing Thada(uc012axy.1:exon15:c.2160+1G>A) NA NA splicing "ENSMUSG00000024251(ENSMUST00000047524:exon15:c.2160+1G>A,ENSMUST00000025099:exon14:c.1468+1G>A)" NA NA 17qE4 NA NA chr17 84839334 CTAxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 77 0 0 19.182825 0.333333 0.02 -0.219203 16 8 450 220 60 60 0 0 CC 11.127752 37 0 1016 0 KEEP - Thada YES MNNG_1 chr17 84854454 84854454 G A exonic Thada nonsynonymous SNV NM_183021:c.C356T:p.T119I exonic Thada nonsynonymous SNV uc012axy.1:c.C356T:p.T119I exonic ENSMUSG00000024251 nonsynonymous SNV ENSMUST00000025099:c.C356T:p.T119I 17qE4 NA NA chr17 84854454 AAAxTAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162445 0.162467 0.999863 34 0 0 15.664882 0.461538 0.02 -0.113996 7 6 194 167 60 60 0 0 GG 6.014768 20 0 541 0 KEEP - Thada YES MNNG_1 chr17 87739399 87739399 C T intronic Ttc7 NA NA intronic Ttc7 NA NA intronic ENSMUSG00000036918 NA NA 17qE4 NA NA chr17 87739399 CTTxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926528 0.92664 0.999879 78 0 0 75.874207 0.613636 0.02 -0.393883 17 27 487 757 60 60 0 0 CC 6.555692 22 0 600 0 KEEP + Ttc7 YES MNNG_1 chr17 88981802 88981802 G A exonic Ppp1r21 synonymous SNV NM_028658:c.G2133A:p.E711E exonic Klraq1 synonymous SNV uc008dvp.2:c.G192A:p.E64E exonic ENSMUSG00000034709 synonymous SNV ENSMUST00000038551:c.G2133A:p.E711E 17qE4 NA NA chr17 88981802 GGAxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693229 0.693668 0.999366 60 4 0 37.153429 0.482759 0.02 -0.263088 15 14 437 392 60 60 0 0 GG 5.113197 17 0 480 0 KEEP + Ppp1r21 YES MNNG_1 chr17 88983174 88983174 T C intronic Ppp1r21 NA NA intronic Klraq1 NA NA intronic ENSMUSG00000034709 NA NA 17qE4 NA NA chr17 88983174 CTCxTCT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 143 1 0 72.556371 0.421875 0.02 1.322184 37 27 1054 786 60 60 0 0 TT 17.746823 59 0 1651 0 KEEP + Ppp1r21 NO MNNG_1 chr17 9162427 9162427 C T exonic Pde10a nonsynonymous SNV NM_011866:c.C1847T:p.S616F exonic Pde10a nonsynonymous SNV uc008ajt.1:c.C1424T:p.S475F exonic ENSMUSG00000023868 nonsynonymous SNV ENSMUST00000115708:c.C995T:p.S332F 17qA1 NA NA chr17 9162427 GCTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94839 0.948402 0.999988 88 0 0 58.915179 0.458333 0.02 -0.420965 26 22 766 628 60 60 0 0 CC 8.096043 27 0 750 0 KEEP + Pde10a YES MNNG_1 chr18 11063046 11063046 G A exonic Gata6 nonsynonymous SNV NM_010258:c.G1315A:p.A439T exonic Gata6 nonsynonymous SNV uc008ebk.1:c.G1315A:p.A439T exonic ENSMUSG00000005836 nonsynonymous SNV ENSMUST00000047762:c.G1315A:p.A439T 18qA1 NA NA chr18 11063046 TGTxCCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 147 2 0 40.756 0.472222 0.02 -0.31521 19 17 542 435 60 60 0 0 GG 23.135413 77 0 2139 0 KEEP + Gata6 YES MNNG_1 chr18 12081962 12081962 G A exonic Cables1 synonymous SNV NM_022021:c.G987A:p.G329G exonic Cables1 synonymous SNV uc012azi.1:c.G987A:p.G329G exonic ENSMUSG00000040957 synonymous SNV ENSMUST00000046948:c.G987A:p.G329G 18qA1 NA NA chr18 12081962 TGGxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 95 0 0 61.158156 0.469388 0.02 -0.429713 26 23 757 649 60 60 0 0 GG 11.1234 37 0 1046 0 KEEP + Cables1 YES MNNG_1 chr18 12098293 12098293 G A exonic Cables1 synonymous SNV NM_022021:c.G1317A:p.E439E exonic Cables1 synonymous SNV uc012azi.1:c.G1317A:p.E439E exonic ENSMUSG00000040957 synonymous SNV ENSMUST00000046948:c.G1317A:p.E439E 18qA1 NA NA chr18 12098293 GGAxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 67 2 0 29.957879 0.458333 0.02 -0.210493 13 11 388 319 60 60 0 0 GG 8.415817 28 0 786 0 KEEP + Cables1 YES MNNG_1 chr18 12356478 12356478 G A exonic Npc1 synonymous SNV NM_008720:c.C2785T:p.L929L exonic Npc1 synonymous SNV uc008ecb.1:c.C2785T:p.L929L exonic ENSMUSG00000024413 synonymous SNV ENSMUST00000025279:c.C2785T:p.L929L 18qA1 NA NA chr18 12356478 CCAxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 111 0 0 52.461995 0.434783 0.02 -0.438483 26 20 753 566 60 60 0 0 GG 12.333145 41 0 1164 0 KEEP - Npc1 YES MNNG_1 chr18 12492699 12492699 G A exonic Lama3 nonsynonymous SNV NM_010680:c.G167A:p.R56K exonic Lama3 nonsynonymous SNV uc008ecf.2:c.G167A:p.R56K exonic ENSMUSG00000024421 nonsynonymous SNV ENSMUST00000092070:c.G167A:p.R56K 18qA1 NA NA chr18 12492699 CGAxAAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.833904 0.835716 0.997832 56 0 0 64.687014 0.621622 0.02 -0.323416 14 23 370 643 60 60 0 0 GG 4.812444 16 0 451 0 KEEP + Lama3 YES MNNG_1 chr18 14003990 14003990 C T exonic Zfp521 nonsynonymous SNV NM_145492:c.G1874A:p.G625D exonic Zfp521 nonsynonymous SNV uc008edc.1:c.G1874A:p.G625D exonic ENSMUSG00000024420 nonsynonymous SNV ENSMUST00000025288:c.G1874A:p.G625D 18qA1 NA NA chr18 14003990 CCGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260941 0.260965 0.999909 50 0 0 11.097738 0.3125 0.02 -0.138928 11 5 302 130 60 60 0 0 CC 7.192413 24 0 644 0 KEEP - Zfp521 YES MNNG_1 chr18 33373260 33373260 C T intronic Stard4 NA NA intronic Stard4 NA NA intronic ENSMUSG00000024378 NA NA 18qB1 NA NA chr18 33373260 CGGxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 192 0 0 110.315054 0.5 0.02 0.933162 43 43 1212 1157 60 60 0 0 CC 22.205243 74 0 1973 0 KEEP - Stard4 YES MNNG_1 chr18 35953144 35953144 C T exonic Ube2d2a nonsynonymous SNV NM_019912:c.C50T:p.P17L exonic Ube2d2 nonsynonymous SNV uc012bbj.1:c.C50T:p.P17L exonic ENSMUSG00000091896 nonsynonymous SNV ENSMUST00000167406:c.C50T:p.P17L 18qB2 NA NA chr18 35953144 ATCxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 77 0 0 15.777779 0.4 0.02 -0.131552 9 6 262 173 60 60 0 0 CC 13.837266 46 0 1300 0 KEEP + Ube2d2a YES MNNG_1 chr18 36955641 36955641 G A intronic Zmat2 NA NA intronic Zmat2 NA NA intronic ENSMUSG00000001383 NA NA 18qB2 NA NA chr18 36955641 TAAxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 47 0 0 19.798008 0.583333 0.02 -0.105242 5 7 149 200 60 60 0 0 GG 8.723393 29 0 829 0 KEEP + Zmat2 YES MNNG_1 chr18 6065776 6065776 G A exonic Arhgap12 nonsynonymous SNV NM_001039692:c.C1007T:p.P336L exonic Arhgap12 nonsynonymous SNV uc008dzc.1:c.C1007T:p.P336L exonic ENSMUSG00000041225 nonsynonymous SNV ENSMUST00000062584:c.C1007T:p.P336L 18qA1 NA NA chr18 6065776 GGAxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999998 57 0 0 25.487913 0.529412 0.02 -0.14909 8 9 229 263 60 60 0 0 GG 9.926608 33 0 929 0 KEEP - Arhgap12 YES MNNG_1 chr18 60761831 60761831 G A exonic Synpo nonsynonymous SNV NM_001109975:c.C1979T:p.S660F exonic Synpo nonsynonymous SNV uc008fap.2:c.C1979T:p.S660F exonic ENSMUSG00000043079 nonsynonymous SNV ENSMUST00000031639:c.C2696T:p.S899F 18qD3 NA NA chr18 60761831 GGAxACC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 181 4 0 121.488421 0.424779 0.02 2.391303 65 48 1914 1321 60 60 0 0 GG 12.634824 42 0 1203 0 KEEP - Synpo YES MNNG_1 chr18 61325233 61325233 G A exonic Hmgxb3 nonsynonymous SNV NM_134134:c.C812T:p.S271F exonic Hmgxb3 nonsynonymous SNV uc008fbq.1:c.C812T:p.S271F exonic ENSMUSG00000024622 nonsynonymous SNV ENSMUST00000025524:c.C773T:p.S258F 18qE1 NA NA chr18 61325233 CTGxAGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 85 1 0 42.300281 0.421053 0.02 -0.333229 22 16 638 459 60 60 0 0 GG 9.325789 31 0 889 0 KEEP - Hmgxb3 YES MNNG_1 chr18 61654689 61654689 G A exonic Arhgef37 synonymous SNV NM_177828:c.C1836T:p.Y612Y exonic Arhgef37 synonymous SNV uc008fca.2:c.C1836T:p.Y612Y exonic ENSMUSG00000045094 synonymous SNV ENSMUST00000051931:c.C1416T:p.Y472Y 18qE1 NA NA chr18 61654689 AGGxTAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 136 0 0 64.429672 0.346154 0.02 1.109571 51 27 1430 734 60 60 0 0 GG 13.816209 46 0 1234 0 KEEP - Arhgef37 YES MNNG_1 chr18 61715546 61715546 G A intronic Csnk1a1 NA NA intronic Csnk1a1 NA NA intronic ENSMUSG00000024576 NA NA 18qE1 NA NA chr18 61715546 GGGxGGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 107 0 0 67.455699 0.52 0.02 1.320041 24 26 704 701 60 60 1 2 GG 14.896742 50 0 1274 0 KEEP + Csnk1a1 YES MNNG_1 chr18 63937751 63937751 G A exonic Wdr7 synonymous SNV NM_001014981:c.G2559A:p.Q853Q exonic Wdr7 synonymous SNV uc008fea.2:c.G2559A:p.Q853Q exonic ENSMUSG00000040560 synonymous SNV ENSMUST00000072726:c.G2559A:p.Q853Q 18qE1 NA NA chr18 63937751 TCAxGCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 74 0 0 34.542885 0.4 0.02 -0.315544 21 14 601 381 60 60 0 0 GG 10.828653 36 0 1011 0 KEEP + Wdr7 YES MNNG_1 chr18 65464736 65464736 G A exonic Alpk2 nonsynonymous SNV NM_001037294:c.C4640T:p.T1547I exonic Alpk2 nonsynonymous SNV uc008feu.2:c.C4640T:p.T1547I exonic ENSMUSG00000032845 nonsynonymous SNV ENSMUST00000148078:c.C2627T:p.T876I 18qE1 NA NA chr18 65464736 CGGxTTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 109 0 0 43.539801 0.4 0.02 -0.411619 27 18 718 481 60 60 0 0 GG 14.73819 49 0 1359 0 KEEP - Alpk2 YES MNNG_1 chr18 65784295 65784295 G A exonic Zfp532 synonymous SNV NM_207255:c.G1644A:p.Q548Q exonic Zfp532 synonymous SNV uc008ffc.2:c.G1644A:p.Q548Q exonic ENSMUSG00000042439 synonymous SNV ENSMUST00000049016:c.G1644A:p.Q548Q 18qE1 NA NA chr18 65784295 GCAxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 165 1 0 65.186496 0.369863 0.02 1.055131 46 27 1328 732 60 60 0 0 GG 20.444096 68 0 1866 0 KEEP + Zfp532 YES MNNG_1 chr18 68395328 68395328 G A exonic Ldlrad4 synonymous SNV NM_172631:c.G201A:p.Q67Q exonic D18Ertd653e synonymous SNV uc008fnh.1:c.G159A:p.Q53Q exonic ENSMUSG00000024544 synonymous SNV ENSMUST00000025426:c.G159A:p.Q53Q 18qE2 NA NA chr18 68395328 GCAxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 100 2 0 28.994112 0.266667 0.02 -0.394631 33 12 960 346 60 60 0 0 GG 12.111219 43 1 1213 7 KEEP + Ldlrad4 YES MNNG_1 chr18 70668965 70668965 G T exonic Poli nonsynonymous SNV NM_001136090:c.C1628A:p.S543Y exonic Poli nonsynonymous SNV uc008foi.2:c.C1253A:p.S418Y exonic ENSMUSG00000038425 nonsynonymous SNV ENSMUST00000169526:c.C320A:p.S107Y 18qE2 NA NA chr18 70668965 TGGxAGG G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 117 2 0 6.954885 0.088889 0.02 -0.403417 41 4 1211 109 60 60 0 0 GG 17.145956 57 0 1607 0 KEEP - Poli NO MNNG_1 chr18 71422482 71422482 C G exonic Dcc nonsynonymous SNV NM_007831:c.G4233C:p.K1411N exonic Dcc nonsynonymous SNV uc008fop.1:c.G4233C:p.K1411N exonic ENSMUSG00000060534 nonsynonymous SNV ENSMUST00000073379:c.G4173C:p.K1391N 18qE2 NA NA chr18 71422482 GGGxTTG C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 96 0 0 55.546877 0.571429 0.02 -0.30686 15 20 438 564 60 60 0 0 CC 13.534187 45 0 1251 0 KEEP - Dcc NO MNNG_1 chr18 74463587 74463587 G A intronic Ccdc11 NA NA intronic Ccdc11 NA NA intronic ENSMUSG00000035394 NA NA 18qE2 NA NA chr18 74463587 ATGxCGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 70 0 0 25.830741 0.434783 0.02 -0.201696 13 10 374 279 60 60 0 0 GG 10.801979 36 0 979 0 KEEP + Ccdc11 YES MNNG_1 chr18 79055599 79055599 G A exonic Setbp1 nonsynonymous SNV NM_053099:c.C1591T:p.P531S exonic Setbp1 nonsynonymous SNV uc008fsi.2:c.C1591T:p.P531S exonic ENSMUSG00000024548 nonsynonymous SNV ENSMUST00000025430:c.C1450T:p.P484S 18qE3 NA NA chr18 79055599 CCGxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 227 1 0 122.024168 0.4 0.02 2.321126 72 48 2091 1342 60 60 0 0 GG 27.543775 92 0 2522 0 KEEP - Setbp1 YES MNNG_1 chr19 10748168 10748168 C T exonic Pga5 nonsynonymous SNV NM_021453:c.G610A:p.G204S exonic Pga5 nonsynonymous SNV uc008gqp.2:c.G610A:p.G204S exonic ENSMUSG00000024738 nonsynonymous SNV ENSMUST00000025647:c.G610A:p.G204S 19qA NA NA chr19 10748168 GGCxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999999 80 1 0 13.384731 0.176471 0.02 -0.306954 28 6 816 174 60 60 0 0 CC 10.527924 35 0 988 0 KEEP - Pga5 YES MNNG_1 chr19 11348789 11348789 C T splicing Ms4a5(NM_183190:exon6:c.493-1G>A) NA NA splicing "Ms4a5(uc008gry.1:exon6:c.493-1G>A,uc012biv.1:exon5:c.364-1G>A)" NA NA splicing "ENSMUSG00000054523(ENSMUST00000113013:exon5:c.364-1G>A,ENSMUST00000067673:exon6:c.493-1G>A)" NA NA 19qA NA NA chr19 11348789 CCCxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 79 2 0 11.457035 0.217391 0.02 -0.210491 18 5 533 143 60 60 0 0 CC 12.635128 42 0 1211 0 KEEP - Ms4a5 YES MNNG_1 chr19 11851608 11851608 G A exonic Stx3 nonsynonymous SNV NM_001025307:c.C839T:p.S280F exonic Stx3 nonsynonymous SNV uc008gsy.1:c.C839T:p.S280F exonic ENSMUSG00000041488 nonsynonymous SNV ENSMUST00000047698:c.C839T:p.S280F 19qA NA NA chr19 11851608 GTAxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 35 2 0 29.330123 0.714286 0.02 -0.122768 4 10 113 282 60 60 0 0 GG 4.512625 15 0 434 0 KEEP - Stx3 YES MNNG_1 chr19 11902955 11902955 C T exonic Olfr1417 nonsynonymous SNV NM_146936:c.G560A:p.R187K exonic Olfr1417 nonsynonymous SNV uc008gtd.1:c.G560A:p.R187K exonic ENSMUSG00000048292 nonsynonymous SNV ENSMUST00000061235:c.G560A:p.R187K 19qA NA NA chr19 11902955 AGTxTCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 113 2 0 16.948896 0.142857 0.02 1.195499 48 8 1394 231 60 60 0 0 CC 12.332781 41 0 1174 0 KEEP + Olfr1417 YES MNNG_1 chr19 12111061 12111061 G T exonic Olfr1423 nonsynonymous SNV NM_146680:c.C170A:p.T57K exonic Olfr1423 nonsynonymous SNV uc008gtl.1:c.C170A:p.T57K exonic ENSMUSG00000067529 nonsynonymous SNV ENSMUST00000087831:c.C170A:p.T57K 19qA NA NA chr19 12111061 GGCxTGT G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 62 0 0 8.898548 0.173913 0.02 -0.210166 19 4 492 116 60 60 0 0 GG 10.215249 34 0 843 0 KEEP - Olfr1423 NO MNNG_1 chr19 12536955 12536955 C T exonic Mpeg1 nonsynonymous SNV NM_010821:c.C1286T:p.T429I exonic Mpeg1 nonsynonymous SNV uc008gub.1:c.C1286T:p.T429I exonic ENSMUSG00000046805 nonsynonymous SNV ENSMUST00000081035:c.C1286T:p.T429I 19qA NA NA chr19 12536955 AGAxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 275 2 0 58.936513 0.277778 0.02 0.995483 65 25 1888 701 60 60 0 0 CC 40.599263 135 0 3707 0 KEEP + Mpeg1 YES MNNG_1 chr19 12552726 12552726 C T exonic Dtx4 nonsynonymous SNV NM_172442:c.G1417A:p.G473S exonic Dtx4 nonsynonymous SNV uc008guc.2:c.G1417A:p.G473S exonic ENSMUSG00000039982 nonsynonymous SNV ENSMUST00000045521:c.G1417A:p.G473S 19qA NA NA chr19 12552726 TGCxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.908941 0.909069 0.999859 72 0 0 33.695596 0.325581 0.02 -0.377014 29 14 833 388 60 60 0 0 CC 5.402641 18 0 495 0 KEEP - Dtx4 YES MNNG_1 chr19 18904728 18904728 C T exonic Trpm6 nonsynonymous SNV NM_153417:c.C3146T:p.S1049F exonic Trpm6 nonsynonymous SNV uc008gya.1:c.C3146T:p.S1049F exonic ENSMUSG00000024727 nonsynonymous SNV ENSMUST00000040489:c.C3146T:p.S1049F 19qB NA NA chr19 18904728 GTTxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 290 2 0 36.352313 0.207792 0.02 1.020049 61 16 1769 458 60 60 0 0 CC 45.71736 152 0 4354 0 KEEP + Trpm6 YES MNNG_1 chr19 24974475 24974475 C T exonic Foxd4 nonsynonymous SNV NM_008022:c.G850A:p.D284N exonic Foxd4 nonsynonymous SNV uc008hav.1:c.G850A:p.D284N exonic ENSMUSG00000051490 nonsynonymous SNV ENSMUST00000058600:c.G850A:p.D284N 19qB NA NA chr19 24974475 GGTxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 218 2 0 79.228033 0.274809 0.02 2.1992 95 36 2691 955 60 60 0 0 CC 18.602183 62 0 1658 0 KEEP - Foxd4 YES MNNG_1 chr19 29790925 29790925 C T exonic 9930021J03Rik nonsynonymous SNV NM_172836:c.G5858A:p.R1953K exonic 9930021J03Rik nonsynonymous SNV uc008hdy.2:c.G5858A:p.R1953K exonic ENSMUSG00000046138 nonsynonymous SNV ENSMUST00000059484:c.G1103A:p.R368K 19qC1 NA NA chr19 29790925 TTTxTTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717228 0.717315 0.999879 57 0 0 15.950197 0.225806 0.02 -0.27188 24 7 709 198 60 60 0 0 CC 6.618425 22 0 634 0 KEEP - 9930021J03Rik YES MNNG_1 chr19 33823908 33823908 C T intergenic "Lipo1(dist=159107),Lipf(dist=211830)" NA NA intergenic "Lipo1(dist=159107),Lipf(dist=211830)" NA NA splicing ENSMUSG00000087303(ENSMUST00000147153:exon5:c.217+1G>A) NA NA 19qC1 "Score=0.950222;Name=No.72656,chr19:33534077" NA chr19 33823908 TTAxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 58 2 0 7.132608 0.272727 0.02 -0.096462 8 3 226 85 60 60 0 0 CC 12.632045 42 0 1152 0 KEEP NA Lipo1 YES MNNG_1 chr19 37248482 37248482 T A exonic Cpeb3 nonsynonymous SNV NM_198300:c.A983T:p.N328I exonic Cpeb3 nonsynonymous SNV uc008hhy.1:c.A983T:p.N328I exonic ENSMUSG00000039652 nonsynonymous SNV ENSMUST00000124158:c.A104T:p.N35I 19qC2 NA NA chr19 37248482 CCAxTAT T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948401 0.948402 0.999999 91 0 0 104.136519 0.765957 0.02 -0.420731 11 36 296 981 60 60 0 0 TT 10.525827 35 0 945 0 KEEP + Cpeb3 NO MNNG_1 chr19 37478026 37478026 C T exonic Kif11 nonsynonymous SNV NM_010615:c.C1378T:p.L460F exonic Kif11 nonsynonymous SNV uc008hin.1:c.C1378T:p.L460F exonic ENSMUSG00000012443 nonsynonymous SNV ENSMUST00000012587:c.C1378T:p.L460F 19qC2 NA NA chr19 37478026 GAAxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.99986 32 0 0 6.701504 0.25 0.02 -0.105223 9 3 248 82 60 60 0 0 CC 5.712901 19 0 513 0 KEEP + Kif11 YES MNNG_1 chr19 37483995 37483995 C T exonic Kif11 synonymous SNV NM_010615:c.C1902T:p.S634S exonic Kif11 synonymous SNV uc008hin.1:c.C1902T:p.S634S exonic ENSMUSG00000012443 synonymous SNV ENSMUST00000012587:c.C1902T:p.S634S 19qC2 NA NA chr19 37483995 TTCxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 219 5 0 24.466819 0.177419 0.02 1.241008 51 11 1489 318 60 60 0 0 CC 36.39665 121 0 3394 0 KEEP + Kif11 YES MNNG_1 chr19 3911036 3911036 C T exonic Ndufs8 synonymous SNV NM_001271443:c.G240A:p.E80E exonic Ndufs8 synonymous SNV uc008fxn.1:c.G240A:p.E80E exonic ENSMUSG00000059734 synonymous SNV ENSMUST00000075092:c.G240A:p.E80E 19qA NA NA chr19 3911036 AGGxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 198 8 0 94.381315 0.361905 0.02 2.469669 67 38 1945 1061 60 60 0 0 CC 18.637224 62 0 1724 0 KEEP - Ndufs8 YES MNNG_1 chr19 39216779 39216779 A G exonic Cyp2c66 nonsynonymous SNV NM_001011707:c.A346G:p.S116G exonic Cyp2c66 nonsynonymous SNV uc008hjw.1:c.A346G:p.S116G exonic ENSMUSG00000067229 nonsynonymous SNV ENSMUST00000087234:c.A346G:p.S116G 19qC3 NA NA chr19 39216779 AGCxGTG A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 82 2 0 12.264688 0.184211 0.02 -0.333062 31 7 861 168 60 60 0 0 AA 10.218846 34 0 922 0 KEEP + Cyp2c66 NO MNNG_1 chr19 41191683 41191683 G A intronic Tll2 NA NA intronic Tll2 NA NA intronic ENSMUSG00000025013 NA NA 19qC3 NA NA chr19 41191683 GCAxCAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 42 0 0 29.688138 1 0.02 -0.078925 0 9 0 254 0 60 0 0 GG 8.421586 28 0 786 0 KEEP - Tll2 YES MNNG_1 chr19 41450458 41450458 C T exonic Pik3ap1 nonsynonymous SNV NM_031376:c.G311A:p.G104E exonic Pik3ap1 nonsynonymous SNV uc008hlu.1:c.G311A:p.G104E exonic ENSMUSG00000025017 nonsynonymous SNV ENSMUST00000059672:c.G311A:p.G104E 19qC3 NA NA chr19 41450458 ACTxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999893 0.999895 0.999999 148 4 0 52.961582 0.255556 0.02 0.879746 67 23 1983 642 60 60 0 0 CC 10.528811 35 0 998 0 KEEP - Pik3ap1 YES MNNG_1 chr19 42222726 42222726 C T UTR3 Marveld1 NA NA UTR3 Marveld1 NA NA UTR3 ENSMUSG00000044345 NA NA 19qC3 NA NA chr19 42222726 CCGxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992908 0.997553 0.995343 95 2 0 47.244963 0.291667 0.02 1.063921 51 21 1483 561 60 60 0 0 CC 4.210763 14 0 386 0 KEEP + Marveld1 YES MNNG_1 chr19 4270853 4270853 C T exonic Ankrd13d synonymous SNV NM_026720:c.G1545A:p.R515R exonic Ankrd13d synonymous SNV uc008fzr.1:c.G1545A:p.R515R exonic ENSMUSG00000005986 synonymous SNV ENSMUST00000056888:c.G1545A:p.R515R 19qA NA NA chr19 4270853 AGGxCGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 314 10 0 109.840471 0.265193 0.02 3.47215 133 48 3865 1324 60 60 0 0 CC 24.635562 82 0 2234 0 KEEP - Ankrd13d YES MNNG_1 chr19 43977107 43977107 C T exonic Dnmbp nonsynonymous SNV NM_028029:c.G710A:p.G237E exonic Dnmbp nonsynonymous SNV uc008hoy.1:c.G710A:p.G237E exonic ENSMUSG00000025195 nonsynonymous SNV ENSMUST00000026209:c.G710A:p.G237E 19qC3 NA NA chr19 43977107 CCTxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 120 0 0 44.012732 0.292308 0.02 1.116616 46 19 1299 520 60 60 0 0 CC 13.774386 46 0 1271 0 KEEP - Dnmbp YES MNNG_1 chr19 45128144 45128144 C T intronic Sfxn3 NA NA intronic Sfxn3 NA NA intronic ENSMUSG00000025212 NA NA 19qC3 NA NA chr19 45128144 TGTxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 218 6 0 72.117288 0.295238 0.02 2.443528 74 31 2182 850 60 60 0 0 CC 21.052665 70 0 1981 0 KEEP + Sfxn3 YES MNNG_1 chr19 46335307 46335307 C T exonic Gbf1 synonymous SNV NM_178930:c.C1116T:p.V372V exonic Gbf1 synonymous SNV uc008hsq.1:c.C792T:p.V264V exonic ENSMUSG00000025224 synonymous SNV ENSMUST00000026254:c.C1116T:p.V372V 19qC3 NA NA chr19 46335307 TGTxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 96 3 0 23.409152 0.215686 0.02 1.230611 40 11 1182 297 60 60 0 0 CC 9.625932 32 0 907 0 KEEP + Gbf1 YES MNNG_1 chr19 46386254 46386254 C A intronic Nfkb2 NA NA UTR3 Nfkb2 NA NA intronic ENSMUSG00000025225 NA NA 19qC3 NA NA chr19 46386254 GTTxCCT C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999766 0.999768 0.999998 136 0 0 18.463244 0.116279 0.02 0.834726 76 10 2209 271 60 60 0 0 CC 9.92711 33 0 941 0 KEEP + Nfkb2 NO MNNG_1 chr19 47200913 47200913 C T exonic Pdcd11 synonymous SNV NM_011053:c.C4176T:p.V1392V exonic Pdcd11 synonymous SNV uc012bnd.1:c.C564T:p.V188V exonic ENSMUSG00000025047 synonymous SNV ENSMUST00000072141:c.C4176T:p.V1392V 19qC3 NA NA chr19 47200913 GGTxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 170 2 0 61.76608 0.292135 0.02 0.915103 63 26 1818 727 60 60 0 0 CC 15.03427 50 0 1390 0 KEEP + Pdcd11 YES MNNG_1 chr19 47743066 47743066 C T exonic Col17a1 nonsynonymous SNV NM_007732:c.G1627A:p.G543S exonic Col17a1 nonsynonymous SNV uc008hvi.2:c.G1627A:p.G543S exonic ENSMUSG00000025064 nonsynonymous SNV ENSMUST00000026045:c.G1627A:p.G543S 19qD1 NA NA chr19 47743066 TGCxTAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 337 6 0 115.719111 0.319728 0.02 2.280446 100 47 2912 1333 60 60 0 0 CC 42.715669 142 0 4041 0 KEEP - Col17a1 YES MNNG_1 chr19 5145109 5145109 C T exonic Pacs1 synonymous SNV NM_153129:c.G1446A:p.K482K exonic Pacs1 synonymous SNV uc008gcj.1:c.G1446A:p.K482K exonic ENSMUSG00000024855 synonymous SNV ENSMUST00000164003:c.G1047A:p.K349K 19qA NA NA chr19 5145109 GGAxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 87 2 0 27.605319 0.25 0.02 -0.420942 36 12 1043 336 60 60 0 0 CC 9.023228 30 0 834 0 KEEP - Pacs1 YES MNNG_1 chr19 53309439 53309439 C T exonic Add3 synonymous SNV NM_001164099:c.C1131T:p.T377T exonic Add3 synonymous SNV uc008hwi.2:c.C1131T:p.T377T exonic ENSMUSG00000025026 synonymous SNV ENSMUST00000050096:c.C1131T:p.T377T 19qD2 NA NA chr19 53309439 GACxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888874 0.888875 0.999999 89 2 0 26.694901 0.268293 0.02 -0.35956 30 11 873 318 60 60 0 0 CC 10.755068 36 0 967 0 KEEP + Add3 YES MNNG_1 chr19 5483101 5483101 C T intronic Mus81 NA NA intronic Mus81 NA NA intronic ENSMUSG00000024906 NA NA 19qA NA NA chr19 5483101 CTAxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976853 0.976865 0.999988 93 2 0 37.53583 0.290909 0.02 1.213088 39 16 1088 443 60 60 0 0 CC 8.119996 27 0 732 0 KEEP - Mus81 YES MNNG_1 chr19 55369891 55369891 C T exonic Acsl5 nonsynonymous SNV NM_027976:c.C1940T:p.P647L exonic Acsl5 nonsynonymous SNV uc008hxp.1:c.C1940T:p.P647L exonic ENSMUSG00000024981 nonsynonymous SNV ENSMUST00000163443:c.C695T:p.P232L 19qD2 NA NA chr19 55369891 AGCxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 81 2 0 11.457247 0.217391 0.02 -0.201706 18 5 520 143 60 60 0 0 CC 12.33223 41 0 1146 0 KEEP + Acsl5 YES MNNG_1 chr19 5660502 5660502 C T exonic Sipa1 nonsynonymous SNV NM_001164482:c.G479A:p.G160D exonic "Sipa1,mKIAA4074" nonsynonymous SNV uc008geg.2:c.G443A:p.G148D exonic ENSMUSG00000056917 nonsynonymous SNV ENSMUST00000169854:c.G479A:p.G160D 19qA NA NA chr19 5660502 AAGxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998865 0.998867 0.999997 116 0 0 37.36372 0.220779 0.02 1.019965 60 17 1740 469 60 60 0 0 CC 9.022359 30 0 819 0 KEEP - Sipa1 YES MNNG_1 chr19 5695741 5695741 C T exonic Map3k11 nonsynonymous SNV NM_022012:c.C1082T:p.A361V exonic Map3k11 nonsynonymous SNV uc008get.1:c.C1082T:p.A361V exonic ENSMUSG00000004054 nonsynonymous SNV ENSMUST00000004156:c.C1082T:p.A361V 19qA NA NA chr19 5695741 GGGxACA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 268 4 0 63.253262 0.219178 0.02 1.889085 114 32 3262 813 60 60 0 0 CC 24.942701 83 0 2297 0 KEEP + Map3k11 YES MNNG_1 chr19 5718630 5718630 C T exonic Ehbp1l1 nonsynonymous SNV NM_001114597:c.G2644A:p.A882T exonic Ehbp1l1 nonsynonymous SNV uc008gew.2:c.G2644A:p.A882T exonic ENSMUSG00000024937 nonsynonymous SNV ENSMUST00000049295:c.G2644A:p.A882T 19qA NA NA chr19 5718630 TGGxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 153 2 0 54.783236 0.319444 0.02 1.037501 49 23 1441 634 60 60 0 0 CC 17.144528 57 0 1590 0 KEEP - Ehbp1l1 YES MNNG_1 chr19 5720340 5720340 C T exonic Ehbp1l1 nonsynonymous SNV NM_001114597:c.G934A:p.A312T exonic Ehbp1l1 nonsynonymous SNV uc008gev.2:c.G934A:p.A312T exonic ENSMUSG00000024937 nonsynonymous SNV ENSMUST00000049295:c.G934A:p.A312T 19qA NA NA chr19 5720340 GTGxATC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 285 6 0 117.806601 0.309942 0.02 3.346762 118 53 3407 1385 60 60 0 0 CC 20.1474 67 0 1849 0 KEEP - Ehbp1l1 YES MNNG_1 chr19 5907080 5907080 G A exonic Dpf2 synonymous SNV NM_011262:c.C114T:p.R38R exonic Dpf2 synonymous SNV uc012bhh.1:c.C54T:p.R18R exonic ENSMUSG00000024826 synonymous SNV ENSMUST00000118623:c.C114T:p.R38R 19qA NA NA chr19 5907080 CAGxCGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 67 0 0 61.391455 0.724138 0.02 -0.254319 8 21 240 588 60 60 0 0 GG 9.62551 32 0 896 0 KEEP - Dpf2 YES MNNG_1 chr19 6071529 6071529 C T intronic Vps51 NA NA intronic 1110014N23Rik NA NA intronic ENSMUSG00000024797 NA NA 19qA NA NA chr19 6071529 TGGxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 207 1 0 95.756609 0.29078 0.02 2.145604 100 41 2892 1131 60 60 0 0 CC 13.225107 44 0 1208 0 KEEP - Vps51 YES MNNG_1 chr19 60945886 60945886 G A intronic Prdx3 NA NA intronic Prdx3 NA NA intronic ENSMUSG00000024997 NA NA 19qD3 NA NA chr19 60945886 AAAxGTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120175 0.120436 0.997832 32 0 0 24.215423 0.727273 0.02 -0.096471 3 8 87 232 60 60 0 0 GG 4.813387 16 0 461 0 KEEP - Prdx3 YES MNNG_1 chr19 6114444 6114444 C T exonic Naaladl1 synonymous SNV NM_001009546:c.C1617T:p.S539S exonic Naaladl1 synonymous SNV uc008ghk.1:c.C1617T:p.S539S exonic ENSMUSG00000054999 synonymous SNV ENSMUST00000044451:c.C1617T:p.S539S 19qA NA NA chr19 6114444 GAGxAAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 146 4 0 41.790989 0.260274 0.02 1.037526 54 19 1564 509 60 60 0 0 CC 15.941913 53 0 1481 0 KEEP + Naaladl1 YES MNNG_1 chr19 6250015 6250015 C T intronic Atg2a NA NA intronic Atg2a NA NA intronic ENSMUSG00000024773 NA NA 19qA NA NA chr19 6250015 GCCxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 290 2 0 112.731549 0.276836 0.02 3.776377 128 49 3679 1347 60 60 0 0 CC 22.855215 76 0 2121 0 KEEP + Atg2a YES MNNG_1 chr19 6253573 6253573 C T exonic Atg2a nonsynonymous SNV NM_194348:c.C3361T:p.L1121F exonic Atg2a nonsynonymous SNV uc008ghv.1:c.C2578T:p.L860F exonic ENSMUSG00000024773 nonsynonymous SNV ENSMUST00000045351:c.C3361T:p.L1121F 19qA NA NA chr19 6253573 ACCxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 327 6 0 115.380224 0.27027 0.02 3.705909 135 50 3903 1384 60 60 0 0 CC 29.479841 98 0 2783 0 KEEP + Atg2a YES MNNG_1 chr19 6341736 6341736 C T intronic Map4k2 NA NA intronic Map4k2 NA NA intronic ENSMUSG00000024948 NA NA 19qA NA NA chr19 6341736 GTGxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 159 5 0 15.916237 0.170213 0.02 1.080431 39 8 1085 214 60 60 0 0 CC 23.857525 80 0 1997 0 KEEP + Map4k2 YES MNNG_1 chr19 6346375 6346375 C T intronic Map4k2 NA NA intronic Map4k2 NA NA intronic ENSMUSG00000024948 NA NA 19qA NA NA chr19 6346375 ATGxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 327 5 0 145.003412 0.293839 0.02 4.922376 149 62 4265 1709 60 60 0 0 CC 26.166176 87 0 2409 0 KEEP + Map4k2 YES MNNG_1 chr19 6904789 6904789 G A intronic Rps6ka4 NA NA intronic Rps6ka4 NA NA intronic ENSMUSG00000024952 NA NA 19qA NA NA chr19 6904789 CCAxCGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963707 0.963774 0.999931 91 0 0 89.831205 0.627451 0.02 1.248 19 32 540 892 60 60 0 0 GG 7.518383 25 0 693 0 KEEP - Rps6ka4 YES MNNG_1 chr19 6928474 6928474 C T exonic Ccdc88b nonsynonymous SNV NM_001081291:c.G1589A:p.G530D exonic Ccdc88b nonsynonymous SNV uc008gjb.1:c.G1589A:p.G530D exonic ENSMUSG00000047810 nonsynonymous SNV ENSMUST00000113440:c.G1589A:p.G530D 19qA NA NA chr19 6928474 TCAxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.991955 0.992094 0.99986 85 0 0 49.413561 0.333333 0.02 1.143272 42 21 1123 568 60 60 0 0 CC 5.413939 18 0 498 0 KEEP - Ccdc88b YES MNNG_1 chr19 6930630 6930630 C T exonic Ccdc88b nonsynonymous SNV NM_001081291:c.G656A:p.R219K exonic Ccdc88b nonsynonymous SNV uc008gjb.1:c.G656A:p.R219K exonic ENSMUSG00000047810 nonsynonymous SNV ENSMUST00000080351:c.G659A:p.R220K 19qA NA NA chr19 6930630 AGCxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 254 2 0 92.596833 0.254902 0.02 4.038874 114 39 3320 1117 60 60 0 0 CC 19.251515 64 0 1808 0 KEEP - Ccdc88b YES MNNG_1 chr19 6981573 6981573 C T exonic Prdx5 synonymous SNV NM_012021:c.G510A:p.G170G exonic Prdx5 synonymous SNV uc008gjc.1:c.G510A:p.G170G exonic ENSMUSG00000024953 synonymous SNV ENSMUST00000173091:c.G378A:p.G126G 19qA NA NA chr19 6981573 ATTxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981954 0.981955 0.999998 99 0 0 26.491264 0.210526 0.02 1.195431 45 12 1296 335 60 60 0 0 CC 9.910376 33 0 889 0 KEEP - Prdx5 YES MNNG_1 chr19 7348351 7348351 C T exonic Rcor2 nonsynonymous SNV NM_054048:c.C866T:p.T289I exonic Rcor2 nonsynonymous SNV uc008gkp.1:c.C866T:p.T289I exonic ENSMUSG00000024968 nonsynonymous SNV ENSMUST00000113369:c.C866T:p.T289I 19qA NA NA chr19 7348351 GGAxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 87 0 0 10.370005 0.185185 0.02 -0.245538 22 5 624 136 60 60 0 0 CC 13.820086 46 0 1254 0 KEEP + Rcor2 YES MNNG_1 chr19 8419864 8419864 G A exonic Slc22a30 synonymous SNV NM_177002:c.C1017T:p.D339D exonic C730048C13Rik synonymous SNV uc008glx.1:c.C1017T:p.D339D exonic ENSMUSG00000052562 synonymous SNV ENSMUST00000064507:c.C1017T:p.D339D 19qA "Score=0.952908;Name=No.72588,chr19:8134065" NA chr19 8419864 CAAxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 236 0 0 113.883225 0.701754 0.02 1.195424 17 40 482 1099 60 60 0 0 GG 43.600227 145 0 4023 0 KEEP - Slc22a30 YES MNNG_1 chr1 102266485 102266485 T A intronic Cntnap5b NA NA intronic Cntnap5b NA NA intronic ENSMUSG00000067028 NA NA 1qE1.1 NA NA chr1 102266485 CCAxCCC T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 196 8 0 9.478302 0.106383 0.02 -0.420482 42 5 1132 140 60 60 0 0 TT 34.887752 116 0 3183 0 KEEP + Cntnap5b NO MNNG_1 chr1 107710248 107710248 G A exonic Tnfrsf11a nonsynonymous SNV NM_009399:c.G307A:p.D103N exonic "RANK,Tnfrsf11a" nonsynonymous SNV uc007cgo.1:c.G307A:p.D103N exonic ENSMUSG00000026321 nonsynonymous SNV ENSMUST00000027559:c.G307A:p.D103N 1qE2.1 NA NA chr1 107710248 GTGxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 296 3 0 231.977966 0.582192 0.02 2.084296 61 85 1811 2346 60 60 0 0 GG 32.106134 107 0 2960 0 KEEP + Tnfrsf11a YES MNNG_1 chr1 108289210 108289210 G A exonic Phlpp1 nonsynonymous SNV NM_133821:c.G4357A:p.E1453K exonic Phlpp1 nonsynonymous SNV uc007cgv.2:c.G4357A:p.E1453K exonic ENSMUSG00000044340 nonsynonymous SNV ENSMUST00000061047:c.G4357A:p.E1453K 1qE2.1 NA NA chr1 108289210 GATxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 211 2 0 85.220714 0.349515 0.02 2.487325 67 36 1956 970 60 60 0 0 GG 24.668274 82 0 2356 0 KEEP + Phlpp1 YES MNNG_1 chr1 112851342 112851342 G A UTR5 Cdh19 NA NA UTR5 Cdh19 NA NA UTR5 ENSMUSG00000047216 NA NA 1qE2.1 NA NA chr1 112851342 CTGxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139814 0.139832 0.999869 36 0 0 18.797502 0.583333 0.02 -0.105219 5 7 138 190 60 60 0 0 GG 6.31596 21 0 575 0 KEEP - Cdh19 YES MNNG_1 chr1 120467529 120467529 G A exonic Clasp1 nonsynonymous SNV NM_029709:c.G3361A:p.D1121N exonic Clasp1 nonsynonymous SNV uc007cii.2:c.G3385A:p.D1129N exonic ENSMUSG00000064302 nonsynonymous SNV ENSMUST00000165223:c.G3385A:p.D1129N 1qE2.3 NA NA chr1 120467529 GAGxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 49 0 0 15.609007 0.428571 0.02 -0.122779 8 6 238 169 60 60 0 0 GG 8.403993 28 0 748 0 KEEP + Clasp1 YES MNNG_1 chr1 121423147 121423147 C T exonic Tmem185b synonymous SNV NM_146103:c.C60T:p.C20C exonic Tmem185b synonymous SNV uc007ciu.1:c.C60T:p.C20C ncRNA_exonic ENSMUSG00000037015 NA NA 1qE2.3 NA NA chr1 121423147 CTGxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 163 3 0 61.236403 0.371429 0.02 1.07272 44 26 1288 689 60 60 0 0 CC 21.357386 71 0 2009 0 KEEP + Tmem185b YES MNNG_1 chr1 121806598 121806598 G A exonic Tmem177 synonymous SNV NM_175106:c.C927T:p.G309G exonic Tmem177 synonymous SNV uc007cja.1:c.C927T:p.G309G exonic ENSMUSG00000036975 synonymous SNV ENSMUST00000037906:c.C927T:p.G309G 1qE2.3 NA NA chr1 121806598 GCGxCCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835706 0.835716 0.999988 73 0 0 63.924757 0.638889 0.02 -0.324361 13 23 387 632 60 60 0 0 GG 8.114251 27 0 742 0 KEEP - Tmem177 YES MNNG_1 chr1 12555759 12555759 C T intergenic "A830018L16Rik(dist=589776),Gm17644(dist=101885)" NA NA intergenic "A830018L16Rik(dist=589776),Sulf1(dist=126752)" NA NA intergenic "ENSMUSG00000064969(dist=190636),ENSMUSG00000066918(dist=101885)" NA NA 1qA3 "Score=0.95476;Name=No.3162,chr7:59001996" NA chr1 12555759 CAAxGAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 478 12 36 13.518447 0.088889 0.02 0.791869 82 8 2132 214 60 38 0 0 CC 92.499746 312 1 7862 11 KEEP NA A830018L16Rik YES MNNG_1 chr1 129574102 129574102 G A exonic Tmem163 synonymous SNV NM_028135:c.C105T:p.S35S exonic Tmem163 synonymous SNV uc011wqz.1:c.C105T:p.S35S exonic ENSMUSG00000026347 synonymous SNV ENSMUST00000027585:c.C105T:p.S35S 1qE3 NA NA chr1 129574102 CGGxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 153 0 0 82.62172 0.769231 0.02 -0.350496 9 30 247 775 60 60 0 0 GG 29.72982 99 0 2658 0 KEEP - Tmem163 YES MNNG_1 chr1 129861731 129861731 G A exonic Zranb3 nonsynonymous SNV NM_027678:c.C2243T:p.P748L exonic Zranb3 nonsynonymous SNV uc007cld.1:c.C2243T:p.P748L exonic ENSMUSG00000036086 nonsynonymous SNV ENSMUST00000086614:c.C2243T:p.P748L 1qE4 NA NA chr1 129861731 ATTxGCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019979 0.019982 0.99986 28 0 0 9.153692 0.75 0.02 -0.03508 1 3 28 87 60 60 0 0 GG 5.715514 19 0 539 0 KEEP - Zranb3 YES MNNG_1 chr1 132059491 132059491 C T exonic Thsd7b synonymous SNV NM_172485:c.C3663T:p.V1221V exonic Thsd7b synonymous SNV uc007clw.1:c.C1125T:p.V375V exonic ENSMUSG00000042581 synonymous SNV ENSMUST00000073527:c.C3663T:p.V1221V 1qE4 NA NA chr1 132059491 TGTxAGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 165 4 0 56.412513 0.365079 0.02 1.142744 40 23 1184 634 60 60 0 0 CC 21.058198 70 0 2012 0 KEEP + Thsd7b YES MNNG_1 chr1 134496831 134496831 G A intronic Nfasc NA NA intronic Nfasc NA NA intronic ENSMUSG00000026442 NA NA 1qE4 NA NA chr1 134496831 AAAxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260399 0.260965 0.997832 40 0 0 18.537174 0.466667 0.02 -0.140314 8 7 231 197 60 60 0 0 GG 4.806901 16 0 433 0 KEEP - Nfasc YES MNNG_1 chr1 134562099 134562099 G A UTR5 Nfasc NA NA UTR5 Nfasc NA NA UTR5 ENSMUSG00000026442 NA NA 1qE4 NA NA chr1 134562099 GAGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 180 1 0 90.486983 0.492958 0.02 1.07316 36 35 1028 952 60 60 0 0 GG 20.447758 68 0 1881 0 KEEP - Nfasc YES MNNG_1 chr1 135030148 135030148 G A exonic Ppp1r15b nonsynonymous SNV NM_133819:c.G1825A:p.E609K exonic Ppp1r15b nonsynonymous SNV uc007cpt.2:c.G1825A:p.E609K exonic ENSMUSG00000046062 nonsynonymous SNV ENSMUST00000052529:c.G1825A:p.E609K 1qE4 NA NA chr1 135030148 GGTxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 46 0 0 18.896875 0.583333 0.02 -0.113991 5 7 144 191 60 60 0 0 GG 8.423244 28 0 803 0 KEEP + Ppp1r15b YES MNNG_1 chr1 136197074 136197074 G A exonic Ppfia4 synonymous SNV NM_001144855:c.C3300T:p.A1100A exonic "Ppfia4,mKIAA0897" synonymous SNV uc007crm.2:c.C396T:p.A132A exonic ENSMUSG00000026458 synonymous SNV ENSMUST00000027729:c.C3198T:p.A1066A 1qE4 NA NA chr1 136197074 CAAxGCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 121 3 0 65.500569 0.589744 0.02 -0.342015 16 23 466 660 60 60 0 0 GG 15.943273 53 0 1504 0 KEEP - Ppfia4 YES MNNG_1 chr1 136437964 136437964 G A exonic 4931440L10Rik synonymous SNV NM_001145300:c.C918T:p.F306F exonic 4931440L10Rik synonymous SNV uc011wsf.1:c.C918T:p.F306F exonic ENSMUSG00000046367 synonymous SNV ENSMUST00000052911:c.C918T:p.F306F 1qE4 NA NA chr1 136437964 GAAxAAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.78106 0.78106 1 119 0 0 54.824644 0.588235 0.02 -0.298102 14 20 407 553 60 60 0 0 GG 18.651521 62 0 1785 0 KEEP - 4931440L10Rik YES MNNG_1 chr1 13650440 13650440 G A exonic Lactb2 nonsynonymous SNV NM_145381:c.C92T:p.T31I exonic Lactb2 nonsynonymous SNV uc007aiu.1:c.C92T:p.T31I exonic ENSMUSG00000025937 nonsynonymous SNV ENSMUST00000027071:c.C92T:p.T31I 1qA3 NA NA chr1 13650440 TTGxTGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979524 0.979526 0.999998 104 0 0 69.148579 0.490566 0.02 1.204157 27 26 771 727 60 60 0 0 GG 9.925028 33 0 909 0 KEEP - Lactb2 YES MNNG_1 chr1 137152888 137152888 G A exonic Elf3 nonsynonymous SNV NM_001163131:c.C671T:p.P224L exonic Elf3 nonsynonymous SNV uc007csw.2:c.C611T:p.P204L exonic ENSMUSG00000003051 nonsynonymous SNV ENSMUST00000003135:c.C671T:p.P224L 1qE4 NA NA chr1 137152888 TGGxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987942 0.987943 0.999999 106 2 0 18.232029 0.195122 0.02 1.267339 33 8 950 232 60 60 0 0 GG 10.82874 36 0 1009 0 KEEP - Elf3 YES MNNG_1 chr1 137161759 137161759 C T splicing "Rnpep(NM_001159624:exon9:c.1534+1G>A,NM_145417:exon10:c.1651+1G>A)" NA NA splicing "Rnpep(uc007csy.2:exon10:c.1651+1G>A,uc011wsi.1:exon9:c.1534+1G>A)" NA NA ncRNA_exonic ENSMUSG00000085392 NA NA 1qE4 NA NA chr1 137161759 TTAxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119602 0.120436 0.993072 24 0 0 9.588191 0.363636 0.02 -0.096036 7 4 178 108 60 60 0 0 CC 3.308176 11 0 299 0 KEEP - Rnpep YES MNNG_1 chr1 140955688 140955688 C T intronic Dennd1b NA NA exonic Dennd1b synonymous SNV uc007cvy.2:c.C492T:p.D164D exonic ENSMUSG00000056268 synonymous SNV ENSMUST00000070283:c.C492T:p.D164D 1qF NA NA chr1 140955688 TGAxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 94 0 0 7.854791 0.428571 0.02 -0.061388 4 3 115 85 60 60 0 0 CC 18.948547 63 0 1740 0 KEEP + Dennd1b YES MNNG_1 chr1 141133571 141133571 C G exonic Crb1 nonsynonymous SNV NM_133239:c.G3574C:p.D1192H exonic Crb1 nonsynonymous SNV uc007cwd.1:c.G3391C:p.D1131H exonic ENSMUSG00000063681 nonsynonymous SNV ENSMUST00000027616:c.G3391C:p.D1131H 1qF NA NA chr1 141133571 CATxAGA C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 69 0 0 9.137025 0.16 0.02 -0.219242 21 4 609 120 60 60 0 0 CC 11.732634 39 0 1124 0 KEEP - Crb1 NO MNNG_1 chr1 14745870 14745870 C T UTR5 Msc NA NA UTR5 Msc NA NA exonic ENSMUSG00000054493 nonsynonymous SNV ENSMUST00000067599:c.C335T:p.S112F 1qA3 NA NA chr1 14745870 CCTxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 77 0 0 27.385877 0.37931 0.02 -0.289392 18 11 536 305 60 60 0 0 CC 10.226964 34 0 955 0 KEEP - Msc YES MNNG_1 chr1 152302719 152302719 A C exonic Prg4 synonymous SNV NM_021400:c.T1332G:p.P444P exonic Prg4 synonymous SNV uc007cyg.2:c.T1332G:p.P444P exonic ENSMUSG00000006014 synonymous SNV ENSMUST00000111901:c.T1068G:p.P356P 1qG1 NA NA chr1 152302719 TTCxGGC A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 685 2 17 17.807834 0.052459 0.02 6.490436 289 16 8107 370 60 60 0 0 AA 73.473393 245 0 6398 0 KEEP - Prg4 NO MNNG_1 chr1 153543372 153543372 G A exonic Fam129a nonsynonymous SNV NM_022018:c.G937A:p.D313N exonic Fam129a nonsynonymous SNV uc007cza.2:c.G334A:p.D112N exonic ENSMUSG00000026483 nonsynonymous SNV ENSMUST00000097541:c.G937A:p.D313N 1qG2 NA NA chr1 153543372 ATGxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.423478 0.423478 1 104 0 0 27.058065 0.47619 0.02 -0.184167 11 10 320 286 60 60 0 0 GG 19.844544 66 0 1847 0 KEEP + Fam129a YES MNNG_1 chr1 154687487 154687487 C T exonic Smg7 synonymous SNV NM_001005507:c.G3090A:p.G1030G exonic Smg7 synonymous SNV uc007czo.2:c.G3090A:p.G1030G exonic ENSMUSG00000042772 synonymous SNV ENSMUST00000073441:c.G3090A:p.G1030G 1qG3 NA NA chr1 154687487 AGTxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351366 0.353947 0.992708 33 0 0 14.62206 0.315789 0.02 -0.166379 13 6 364 169 60 60 0 0 CC 2.9739 10 0 266 0 KEEP - Smg7 YES MNNG_1 chr1 154976047 154976047 G A intronic Lamc2 NA NA intronic Lamc2 NA NA intronic ENSMUSG00000026479 NA NA 1qG3 NA NA chr1 154976047 TTGxGCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 134 1 0 91.287628 0.578947 0.02 1.293872 24 33 691 924 60 60 0 0 GG 17.986843 60 0 1638 0 KEEP - Lamc2 YES MNNG_1 chr1 155105209 155105209 C T exonic Lamc1 nonsynonymous SNV NM_010683:c.G845A:p.G282D exonic Lamc1 nonsynonymous SNV uc007czu.1:c.G845A:p.G282D exonic ENSMUSG00000026478 nonsynonymous SNV ENSMUST00000027752:c.G845A:p.G282D 1qG3 NA NA chr1 155105209 CTGxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 57 0 0 9.281458 0.235294 0.02 -0.14908 13 4 376 114 60 60 0 0 CC 8.420775 28 0 769 0 KEEP - Lamc1 YES MNNG_1 chr1 156548412 156548412 C T exonic Cacna1e nonsynonymous SNV NM_009782:c.G368A:p.R123Q exonic Cacna1e nonsynonymous SNV uc007dav.1:c.G368A:p.R123Q exonic ENSMUSG00000004110 nonsynonymous SNV ENSMUST00000004214:c.G368A:p.R123Q 1qG3 NA NA chr1 156548412 CTTxGAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 70 0 0 33.111816 0.40625 0.02 -0.28936 19 13 545 363 60 60 0 0 CC 8.71844 29 0 777 0 KEEP - Cacna1e YES MNNG_1 chr1 158367989 158367989 G A intronic Soat1 NA NA intronic Soat1 NA NA intronic ENSMUSG00000026600 NA NA 1qG3 NA NA chr1 158367989 ATGxCAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036594 0.036766 0.995343 24 0 0 7.824116 0.5 0.02 -0.052616 3 3 87 82 60 60 0 0 GG 4.210937 14 0 388 0 KEEP - Soat1 YES MNNG_1 chr1 16121360 16121360 C T intronic Rdh10 NA NA intronic Rdh10 NA NA intronic ENSMUSG00000025921 NA NA 1qA3 NA NA chr1 16121360 CTGxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 274 2 0 121.419074 0.392 0.02 2.285871 76 49 2194 1344 60 60 0 0 CC 32.735423 109 0 2996 0 KEEP + Rdh10 YES MNNG_1 chr1 162972005 162972005 C T exonic Dars2 nonsynonymous SNV NM_172644:c.G1804A:p.A602T exonic Dars2 nonsynonymous SNV uc007dey.1:c.G1804A:p.A602T exonic ENSMUSG00000026709 nonsynonymous SNV ENSMUST00000035430:c.G1804A:p.A602T 1qH2.1 NA NA chr1 162972005 AGGxTAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 128 0 0 26.719711 0.289474 0.02 -0.333251 27 11 777 314 60 60 0 0 CC 21.028831 70 0 1948 0 KEEP - Dars2 YES MNNG_1 chr1 164408129 164408129 C T UTR5 Dnm3 NA NA UTR5 Dnm3 NA NA UTR5;UTR3 ENSMUSG00000040265;ENSMUSG00000066752 NA NA 1qH2.1 NA NA chr1 164408129 AGCxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 262 0 0 189.902086 0.496503 0.02 2.297995 72 71 2137 1991 60 60 0 0 CC 26.768313 89 0 2466 0 KEEP - Dnm3 YES MNNG_1 chr1 164607505 164607505 G A exonic Prrc2c nonsynonymous SNV NM_001081290:c.C7903T:p.P2635S exonic "Bat2d,Prrc2c" nonsynonymous SNV uc007dgo.1:c.C106T:p.P36S exonic ENSMUSG00000040225 nonsynonymous SNV ENSMUST00000028016:c.C7903T:p.P2635S 1qH2.1 NA NA chr1 164607505 TTGxCGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162456 0.162467 0.999931 47 1 0 19.441466 0.538462 0.02 -0.114009 6 7 174 200 60 60 0 0 GG 7.519454 25 0 695 0 KEEP - Prrc2c YES MNNG_1 chr1 166187093 166187093 C T exonic Slc19a2 synonymous SNV NM_001276455:c.C420T:p.A140A exonic Slc19a2 synonymous SNV uc007did.1:c.C420T:p.A140A exonic ENSMUSG00000040918 synonymous SNV ENSMUST00000044021:c.C420T:p.A140A 1qH2.2 NA NA chr1 166187093 CGCxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 211 0 0 90.482398 0.426829 0.02 1.074547 47 35 1357 981 60 60 0 0 CC 33.387814 111 0 3123 0 KEEP + Slc19a2 YES MNNG_1 chr1 166226018 166226018 C T exonic Blzf1 synonymous SNV NM_001160209:c.G849A:p.E283E exonic Blzf1 synonymous SNV uc007dii.2:c.G849A:p.E283E exonic ENSMUSG00000026577 synonymous SNV ENSMUST00000120447:c.G849A:p.E283E 1qH2.2 NA NA chr1 166226018 CTGxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 80 0 0 22.828074 0.409091 0.02 -0.192942 13 9 390 250 60 60 0 0 CC 13.523798 45 0 1255 0 KEEP - Blzf1 YES MNNG_1 chr1 166229767 166229767 C T exonic Blzf1 nonsynonymous SNV NM_001160209:c.G586A:p.A196T exonic Blzf1 nonsynonymous SNV uc007dii.2:c.G586A:p.A196T exonic ENSMUSG00000026577 nonsynonymous SNV ENSMUST00000120447:c.G586A:p.A196T 1qH2.2 NA NA chr1 166229767 GTGxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 76 0 0 34.781029 0.52 0.02 -0.219238 12 13 351 361 60 60 0 0 CC 12.634464 42 0 1196 0 KEEP - Blzf1 YES MNNG_1 chr1 168318838 168318838 C T exonic Tada1 nonsynonymous SNV NM_030245:c.C476T:p.A159V exonic Tada1 nonsynonymous SNV uc007dkm.2:c.C476T:p.A159V exonic ENSMUSG00000026563 nonsynonymous SNV ENSMUST00000027846:c.C476T:p.A159V 1qH2.3 NA NA chr1 168318838 CTGxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899275 0.899314 0.999957 81 0 0 36.775778 0.357143 0.02 -0.367992 27 15 765 415 60 60 0 0 CC 7.774965 26 0 707 0 KEEP + Tada1 YES MNNG_1 chr1 171918668 171918668 C T exonic Ddr2 nonsynonymous SNV NM_022563:c.G1600A:p.G534S exonic Ddr2 nonsynonymous SNV uc011wvr.1:c.G1600A:p.G534S exonic ENSMUSG00000026674 nonsynonymous SNV ENSMUST00000170800:c.G1600A:p.G534S 1qH3 NA NA chr1 171918668 CACxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 135 0 0 57.708524 0.423077 0.02 1.328773 30 22 868 626 60 60 0 0 CC 19.552865 65 0 1843 0 KEEP - Ddr2 YES MNNG_1 chr1 172078196 172078196 G A intronic Uap1 NA NA intronic Uap1 NA NA intronic ENSMUSG00000026670 NA NA 1qH3 NA NA chr1 172078196 TAAxCAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 109 1 0 41.494766 0.404762 0.02 -0.368274 25 17 718 457 60 60 0 0 GG 16.843375 56 0 1547 0 KEEP - Uap1 YES MNNG_1 chr1 173085728 173085728 C T exonic Mpz nonsynonymous SNV NM_008623:c.C16T:p.P6S exonic Mpz nonsynonymous SNV uc007dnd.1:c.C16T:p.P6S exonic ENSMUSG00000056569 nonsynonymous SNV ENSMUST00000111334:c.C16T:p.P6S 1qH3 NA NA chr1 173085728 GCTxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 310 10 0 107.620214 0.319149 0.02 2.137028 96 45 2739 1245 60 60 0 0 CC 29.99247 100 0 2743 0 KEEP + Mpz YES MNNG_1 chr1 173167358 173167358 G A exonic Ndufs2 synonymous SNV NM_153064:c.C1029T:p.I343I exonic Ndufs2 synonymous SNV uc007dnm.1:c.C1029T:p.I343I exonic ENSMUSG00000013593 synonymous SNV ENSMUST00000111318:c.C951T:p.I317I 1qH3 NA NA chr1 173167358 AATxATT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 132 0 0 89.199888 0.603774 0.02 1.230435 21 32 620 894 60 60 0 0 GG 19.542869 65 0 1839 0 KEEP - Ndufs2 YES MNNG_1 chr1 173168620 173168620 C T intronic Ndufs2 NA NA intronic Ndufs2 NA NA intronic ENSMUSG00000013593 NA NA 1qH3 NA NA chr1 173168620 TATxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 74 0 0 29.222338 0.5 0.02 -0.245549 11 11 323 306 60 60 0 0 CC 13.230861 44 0 1225 0 KEEP - Ndufs2 YES MNNG_1 chr1 173334113 173334113 C T intronic Arhgap30 NA NA intronic Arhgap30 NA NA intronic ENSMUSG00000048865 NA NA 1qH3 NA NA chr1 173334113 CATxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 104 0 0 33.173227 0.371429 0.02 -0.306961 22 13 654 370 60 60 0 0 CC 18.349921 61 0 1735 0 KEEP + Arhgap30 YES MNNG_1 chr1 173338432 173338432 G A exonic Arhgap30 nonsynonymous SNV NM_001005508:c.G2242A:p.G748R exonic Arhgap30 nonsynonymous SNV uc007doh.2:c.G2242A:p.G748R exonic ENSMUSG00000048865 nonsynonymous SNV ENSMUST00000056449:c.G2242A:p.G748R 1qH3 NA NA chr1 173338432 GAAxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.999859 36 0 0 29.630088 0.714286 0.02 -0.122777 4 10 116 285 60 60 0 0 GG 5.414915 18 0 515 0 KEEP + Arhgap30 YES MNNG_1 chr1 173984445 173984445 C T UTR5 Nhlh1 NA NA UTR5 Nhlh1 NA NA UTR5 ENSMUSG00000051251 NA NA 1qH3 NA NA chr1 173984445 CCAxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.289823 0.292001 0.99254 28 0 0 15.832447 0.411765 0.02 -0.14902 10 7 285 175 60 60 0 0 CC 2.706073 9 0 240 0 KEEP - Nhlh1 YES MNNG_1 chr1 174299023 174299023 C T intronic Kcnj10 NA NA intronic Kcnj10 NA NA intronic ENSMUSG00000044708 NA NA 1qH3 NA NA chr1 174299023 TAAxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 28 0 0 8.990721 0.333333 0.02 -0.105219 8 4 224 104 60 60 0 0 CC 4.510989 15 0 406 0 KEEP + Kcnj10 YES MNNG_1 chr1 174424384 174424384 C T intronic Igsf9 NA NA intronic Igsf9 NA NA intronic ENSMUSG00000037995 NA NA 1qH3 NA NA chr1 174424384 GTCxGTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 164 5 0 99.566203 0.474359 0.02 1.110801 41 37 1018 1053 60 60 0 0 CC 18.022685 60 0 1461 0 KEEP + Igsf9 YES MNNG_1 chr1 174427608 174427608 G A exonic Igsf9 synonymous SNV NM_001145800:c.G2961A:p.G987G exonic Igsf9 synonymous SNV uc007dqn.2:c.G2961A:p.G987G exonic ENSMUSG00000037995 synonymous SNV ENSMUST00000052629:c.G2961A:p.G987G 1qH3 NA NA chr1 174427608 GGGxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 134 0 0 122.856006 0.576923 0.02 1.110903 33 45 960 1246 60 60 0 0 GG 12.030947 40 0 1110 0 KEEP + Igsf9 YES MNNG_1 chr1 175682957 175682957 C A exonic Ifi204 stopgain SNV NM_008329:c.G1117T:p.G373X exonic Ifi204 stopgain SNV uc007drv.1:c.G1117T:p.G373X exonic ENSMUSG00000073489 stopgain SNV ENSMUST00000111214:c.G1117T:p.G373X 1qH3 "Score=0.962806;Name=No.506,chr1:175829465" NA chr1 175682957 TTCxACT C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 233 2 0 13.281007 0.24 0.02 -0.219231 19 6 544 164 60 60 0 0 CC 51.730649 172 0 4788 0 KEEP - Ifi204 NO MNNG_1 chr1 175972773 175972773 G A exonic Olfr433 nonsynonymous SNV NM_146717:c.G691A:p.A231T exonic Olfr433 nonsynonymous SNV uc007dsn.2:c.G691A:p.A231T exonic ENSMUSG00000045381 nonsynonymous SNV ENSMUST00000052975:c.G691A:p.A231T 1qH3 NA NA chr1 175972773 GCTxCCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 208 2 0 91.17763 0.493333 0.02 1.02077 38 37 1073 961 60 60 0 0 GG 26.24734 97 1 2667 27 KEEP + Olfr433 YES MNNG_1 chr1 176539237 176539237 C T exonic Fmn2 nonsynonymous SNV NM_019445:c.C2642T:p.A881V exonic Fmn2 nonsynonymous SNV uc011wxa.1:c.C71T:p.A24V exonic ENSMUSG00000028354 nonsynonymous SNV ENSMUST00000030039:c.C2642T:p.A881V 1qH3 NA NA chr1 176539237 CAGxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 211 2 0 86.445946 0.406977 0.02 0.941185 51 35 1495 950 60 60 0 0 CC 28.862077 96 0 2625 0 KEEP + Fmn2 YES MNNG_1 chr1 178802142 178802142 C T intronic Sdccag8 NA NA ncRNA_intronic Cccap NA NA intronic ENSMUSG00000026504 NA NA 1qH4 NA NA chr1 178802142 TCCxTAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 298 0 0 92.858198 0.406977 0.02 1.039334 51 35 1462 1014 60 60 0 0 CC 56.23669 187 0 5219 0 KEEP + Sdccag8 YES MNNG_1 chr1 182112282 182112282 G A exonic Adck3 synonymous SNV NM_001163290:c.C88T:p.L30L exonic Adck3 synonymous SNV uc007dvx.2:c.C88T:p.L30L exonic ENSMUSG00000026489 synonymous SNV ENSMUST00000027766:c.C88T:p.L30L 1qH4 NA NA chr1 182112282 CCAxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.86564 0.865745 0.999879 68 0 0 56.444263 0.552632 0.02 -0.341822 17 21 501 578 60 60 0 0 GG 6.617837 22 0 623 0 KEEP - Adck3 YES MNNG_1 chr1 182740344 182740344 C T exonic H3f3a synonymous SNV NM_008210:c.G186A:p.L62L exonic "H3f3a,H3f3b" synonymous SNV uc007dwr.1:c.G186A:p.L62L exonic ENSMUSG00000060743 synonymous SNV ENSMUST00000081026:c.G186A:p.L62L 1qH4 NA NA chr1 182740344 GATxAGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139826 0.139832 0.999957 47 1 2 15.84825 0.5 0.02 -0.105237 6 6 179 166 60 60 0 0 CC 8.422951 28 0 801 0 KEEP - H3f3a YES MNNG_1 chr1 184554022 184554022 C T intronic Capn8 NA NA intronic Capn8 NA NA intronic ENSMUSG00000038599 NA NA 1qH5 NA NA chr1 184554022 CTCxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999997 40 0 0 8.256622 0.428571 0.02 -0.06135 4 3 106 89 60 60 0 0 CC 9.324612 31 0 866 0 KEEP + Capn8 YES MNNG_1 chr1 184677427 184677427 C T exonic 4922505E12Rik synonymous SNV NM_001033547:c.G1827A:p.E609E exonic 4922505E12Rik synonymous SNV uc007dyj.1:c.G1827A:p.E609E exonic ENSMUSG00000043429 synonymous SNV ENSMUST00000060041:c.G1827A:p.E609E 1qH5 NA NA chr1 184677427 GGGxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 115 0 0 46.11399 0.413043 0.02 -0.403355 27 19 784 506 60 60 0 0 CC 18.045029 60 0 1641 0 KEEP - 4922505E12Rik YES MNNG_1 chr1 191985446 191985446 G A exonic Prox1 nonsynonymous SNV NM_008937:c.C680T:p.A227V exonic Prox1 nonsynonymous SNV uc007ebb.1:c.C680T:p.A227V exonic ENSMUSG00000010175 nonsynonymous SNV ENSMUST00000010319:c.C680T:p.A227V 1qH6 NA NA chr1 191985446 CGGxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 130 0 0 118.696016 0.7 0.02 1.169133 18 42 518 1146 60 60 0 0 GG 17.417924 58 0 1575 0 KEEP - Prox1 YES MNNG_1 chr1 192623381 192623381 C T exonic Rps6kc1 nonsynonymous SNV NM_178775:c.G2302A:p.V768M exonic Rps6kc1 nonsynonymous SNV uc007ebf.1:c.G997A:p.V333M exonic ENSMUSG00000089872 nonsynonymous SNV ENSMUST00000166488:c.G2056A:p.V686M 1qH6 NA NA chr1 192623381 GCAxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 195 3 0 38.991201 0.26087 0.02 1.081499 51 18 1439 476 60 60 0 0 CC 28.814022 96 0 2541 0 KEEP - Rps6kc1 YES MNNG_1 chr1 192932404 192932404 C T exonic Batf3 synonymous SNV NM_030060:c.C249T:p.H83H exonic Batf3 synonymous SNV uc007ecd.1:c.C249T:p.H83H exonic ENSMUSG00000026630 synonymous SNV ENSMUST00000027943:c.C249T:p.H83H 1qH6 NA NA chr1 192932404 TCAxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582561 0.58293 0.999366 47 0 0 40.057303 0.576923 0.02 -0.227989 11 15 318 406 60 60 0 0 CC 5.111886 17 0 456 0 KEEP + Batf3 YES MNNG_1 chr1 193406424 193406424 C T intronic Ints7 NA NA intronic Ints7 NA NA intronic ENSMUSG00000037461 NA NA 1qH6 NA NA chr1 193406424 ATGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.0768 0.077336 0.993072 21 0 0 14.385472 0.625 0.02 -0.07893 3 5 89 143 60 60 0 0 CC 3.308027 11 0 301 0 KEEP + Ints7 YES MNNG_1 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 46 0 0 43.194315 1 0.02 -0.122775 0 13 0 370 0 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO MNNG_1 chr1 196621053 196621053 G A exonic Plxna2 nonsynonymous SNV NM_008882:c.G3676A:p.V1226M exonic Plxna2 nonsynonymous SNV uc007een.1:c.G3676A:p.V1226M exonic ENSMUSG00000026640 nonsynonymous SNV ENSMUST00000027952:c.G3676A:p.V1226M 1qH6 NA NA chr1 196621053 TCCxTGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 103 0 0 59.324215 0.511111 0.02 -0.394427 22 23 560 619 60 60 0 0 GG 12.616394 42 0 1012 0 KEEP + Plxna2 YES MNNG_1 chr1 20557580 20557580 G A exonic Pkhd1 nonsynonymous SNV NM_153179:c.C1061T:p.P354L exonic Pkhd1 nonsynonymous SNV uc007akv.1:c.C1061T:p.P354L exonic ENSMUSG00000043760 nonsynonymous SNV ENSMUST00000060305:c.C1061T:p.P354L 1qA4 NA NA chr1 20557580 TTAxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999999 56 0 0 13.123384 0.384615 0.02 -0.122788 8 5 239 145 60 60 0 0 GG 10.828164 36 0 1015 0 KEEP - Pkhd1 YES MNNG_1 chr1 21951219 21951219 G A intronic Kcnq5 NA NA intronic Kcnq5 NA NA ncRNA_exonic ENSMUSG00000085163 NA NA 1qA4 NA NA chr1 21951219 ATGxCTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 110 0 0 80.524195 0.636364 0.02 -0.385879 16 28 472 797 60 60 0 0 GG 14.402239 48 0 1306 0 KEEP - Kcnq5 YES MNNG_1 chr1 34245336 34245336 G A exonic Dst nonsynonymous SNV NM_134448:c.G5164A:p.V1722I exonic Dst nonsynonymous SNV uc007aoi.1:c.G5164A:p.V1722I exonic ENSMUSG00000026131 nonsynonymous SNV ENSMUST00000097785:c.G5164A:p.V1722I 1qB NA NA chr1 34245336 ATGxTAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 113 0 0 60.602773 0.547619 0.02 -0.377041 19 23 539 622 60 60 0 0 GG 16.843778 56 0 1555 0 KEEP + Dst YES MNNG_1 chr1 34245726 34245726 G A exonic Dst nonsynonymous SNV NM_134448:c.G5554A:p.A1852T exonic Dst nonsynonymous SNV uc007aoi.1:c.G5554A:p.A1852T exonic ENSMUSG00000026131 nonsynonymous SNV ENSMUST00000097785:c.G5554A:p.A1852T 1qB NA NA chr1 34245726 GAGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 104 0 0 43.062236 0.439024 0.02 -0.368144 23 18 657 467 60 60 0 0 GG 15.318259 51 0 1374 0 KEEP + Dst YES MNNG_1 chr1 36364579 36364579 G A UTR5 Arid5a NA NA UTR5 Arid5a NA NA UTR5 ENSMUSG00000037447 NA NA 1qB NA NA chr1 36364579 GCAxTCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 110 2 0 58.842769 0.677419 0.02 -0.306891 10 21 286 573 60 60 0 0 GG 15.276465 51 0 1379 0 KEEP + Arid5a YES MNNG_1 chr1 36374017 36374017 C T intronic Arid5a NA NA UTR5 Arid5a NA NA intronic ENSMUSG00000037447 NA NA 1qB NA NA chr1 36374017 GGCxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997541 0.997553 0.999988 123 2 0 71.105098 0.402778 0.02 1.16455 43 29 1220 784 60 60 0 0 CC 8.05123 27 0 702 0 KEEP + Arid5a YES MNNG_1 chr1 36410390 36410390 A G intronic Kansl3 NA NA intronic "4632411B12Rik,Kiaa1310" NA NA intronic ENSMUSG00000010453 NA NA 1qB NA NA chr1 36410390 AGAxCCA A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353922 0.353947 0.999931 47 2 0 15.118284 0.315789 0.02 -0.166563 13 6 349 174 60 60 0 0 AA 7.21839 24 0 660 0 KEEP - Kansl3 NO MNNG_1 chr1 36528905 36528905 G A exonic Cnnm4 nonsynonymous SNV NM_033570:c.G368A:p.G123E exonic Cnnm4 nonsynonymous SNV uc007aqg.2:c.G368A:p.G123E exonic ENSMUSG00000037408 nonsynonymous SNV ENSMUST00000153128:c.G368A:p.G123E 1qB NA NA chr1 36528905 GCGxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 144 2 0 88.787022 0.492537 0.02 1.20631 34 33 952 932 60 60 0 0 GG 16.83524 56 0 1552 0 KEEP + Cnnm4 YES MNNG_1 chr1 36837776 36837776 C T exonic Zap70 synonymous SNV NM_009539:c.C1381T:p.L461L exonic Zap70 synonymous SNV uc007arb.1:c.C238T:p.L80L exonic ENSMUSG00000026117 synonymous SNV ENSMUST00000070299:c.C445T:p.L149L 1qB NA NA chr1 36837776 GACxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 106 2 0 66.130746 0.462963 0.02 1.319959 29 25 848 704 60 60 0 0 CC 11.731778 39 0 1106 0 KEEP + Zap70 YES MNNG_1 chr1 37120368 37120368 G A intergenic "Tmem131(dist=123996),Cnga3(dist=154755)" NA NA exonic Vwa3b nonsynonymous SNV uc007are.1:c.G884A:p.R295Q exonic ENSMUSG00000050122 nonsynonymous SNV ENSMUST00000067178:c.G884A:p.R295Q 1qB NA NA chr1 37120368 CACxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 115 0 0 43.860027 0.625 0.02 -0.210453 9 15 243 436 60 60 0 0 GG 22.178651 74 0 1886 0 KEEP + Tmem131 YES MNNG_1 chr1 39382950 39382950 G A exonic Npas2 nonsynonymous SNV NM_008719:c.G818A:p.G273E exonic Npas2 nonsynonymous SNV uc007atd.2:c.G818A:p.G273E exonic ENSMUSG00000026077 nonsynonymous SNV ENSMUST00000056815:c.G818A:p.G273E 1qB NA NA chr1 39382950 TAGxATA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 142 0 1 60.117568 0.636364 0.02 -0.289398 12 21 351 595 60 60 1 0 GG 27.037675 90 0 2521 0 KEEP + Npas2 YES MNNG_1 chr1 39729026 39729026 C T intronic Rfx8 NA NA intronic Rfx8 NA NA intronic ENSMUSG00000057173 NA NA 1qB NA NA chr1 39729026 AGAxTCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 70 0 0 14.965143 0.375 0.02 -0.149075 10 6 282 167 60 60 0 0 CC 12.031101 40 0 1110 0 KEEP - Rfx8 YES MNNG_1 chr1 40422132 40422132 C T exonic Il1rl2 stopgain SNV NM_133193:c.C1567T:p.Q523X exonic Il1rl2 stopgain SNV uc007atx.1:c.C1567T:p.Q523X exonic ENSMUSG00000070942 stopgain SNV ENSMUST00000095020:c.C1567T:p.Q523X 1qB NA NA chr1 40422132 GAGxAGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099717 0.099721 0.999957 40 2 0 15.93657 0.6 0.02 -0.087681 4 6 114 160 60 60 0 0 CC 7.811633 26 0 647 0 KEEP + Il1rl2 YES MNNG_1 chr1 45384482 45384482 C T exonic Col3a1 nonsynonymous SNV NM_009930:c.C736T:p.P246S exonic Col3a1 nonsynonymous SNV uc007awq.2:c.C736T:p.P246S exonic ENSMUSG00000026043 nonsynonymous SNV ENSMUST00000087883:c.C736T:p.P246S 1qC1.1 NA NA chr1 45384482 GGAxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 46 0 0 28.298608 0.555556 0.02 -0.157865 8 10 235 289 60 60 0 0 CC 6.015777 20 0 557 0 KEEP + Col3a1 YES MNNG_1 chr1 45463955 45463955 C T exonic Col5a2 nonsynonymous SNV NM_007737:c.G1307A:p.G436E exonic Col5a2 nonsynonymous SNV uc007awr.1:c.G1307A:p.G436E exonic ENSMUSG00000026042 nonsynonymous SNV ENSMUST00000086430:c.G1307A:p.G436E 1qC1.1 NA NA chr1 45463955 GTTxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 64 0 0 20.19854 0.421053 0.02 -0.17539 11 8 321 220 60 60 0 0 CC 12.01849 40 0 1092 0 KEEP - Col5a2 YES MNNG_1 chr1 46580974 46580974 T C intergenic "Dnah7b(dist=150579),Slc39a10(dist=283415)" NA NA intergenic "AK219219(dist=107918),BC048766(dist=267699)" NA NA intergenic "ENSMUSG00000070199(dist=149814),ENSMUSG00000078595(dist=84832)" NA NA 1qC1.1 "Score=0.928627;Name=No.193,chr1:53673641" NA chr1 46580974 TACxGTT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 132 2 1 15.388994 0.296296 0.02 -0.245449 19 8 537 187 60 60 0 0 TT 24.661153 82 0 2250 0 KEEP NA Dnah7b NO MNNG_1 chr1 46797589 46797589 G A intergenic "Dnah7b(dist=367194),Slc39a10(dist=66800)" NA NA intergenic "AK219219(dist=324533),BC048766(dist=51084)" NA NA intergenic "ENSMUSG00000078595(dist=114633),ENSMUSG00000025986(dist=66800)" NA NA 1qC1.1 "Score=0.93936;Name=No.199,chr1:53511208" NA chr1 46797589 TGGxCTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 150 4 1 53.294992 0.633333 0.02 -0.263085 11 19 326 528 60 60 0 0 GG 31.814528 106 0 2876 0 KEEP NA Dnah7b YES MNNG_1 chr1 51853843 51853843 C T exonic Myo1b synonymous SNV NM_001161817:c.G1032A:p.Q344Q exonic Myo1b synonymous SNV uc007axr.2:c.G1032A:p.Q344Q exonic ENSMUSG00000018417 synonymous SNV ENSMUST00000018561:c.G1032A:p.Q344Q 1qC1.1 NA NA chr1 51853843 CACxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 121 1 0 30.93057 0.375 0.02 -0.280636 20 12 577 344 60 60 0 0 CC 19.85315 66 0 1870 0 KEEP - Myo1b YES MNNG_1 chr1 52765518 52765518 G A exonic Mfsd6 nonsynonymous SNV NM_133829:c.C1031T:p.S344F exonic Mfsd6 nonsynonymous SNV uc007ayl.2:c.C1031T:p.S344F exonic ENSMUSG00000041439 nonsynonymous SNV ENSMUST00000087701:c.C1031T:p.S344F 1qC1.1 NA NA chr1 52765518 ACAxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.994778 0.995084 0.999693 117 0 0 94.747749 0.522388 0.02 1.107664 32 35 940 982 60 60 0 0 GG 9.626109 32 0 910 0 KEEP - Mfsd6 YES MNNG_1 chr1 5592394 5592394 C T exonic Oprk1 synonymous SNV NM_001204371:c.C672T:p.L224L exonic Oprk1 synonymous SNV uc007afq.1:c.C405T:p.L135L exonic ENSMUSG00000025905 synonymous SNV ENSMUST00000160339:c.C672T:p.L224L 1qA1 NA NA chr1 5592394 TCTxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 96 0 0 25.731813 0.275 0.02 -0.359559 29 11 848 307 60 60 0 0 CC 13.537474 45 0 1292 0 KEEP + Oprk1 YES MNNG_1 chr1 58118997 58118997 C T exonic Aox1 nonsynonymous SNV NM_009676:c.C1282T:p.R428C exonic Aox1 nonsynonymous SNV uc007bbl.1:c.C1282T:p.R428C exonic ENSMUSG00000063558 nonsynonymous SNV ENSMUST00000001027:c.C1282T:p.R428C 1qC1.3 NA NA chr1 58118997 TTCxGTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 64 0 0 20.756177 0.380952 0.02 -0.184154 13 8 363 230 60 60 0 0 CC 8.416132 28 0 730 0 KEEP + Aox1 YES MNNG_1 chr1 58648055 58648055 G A exonic Ndufb3 synonymous SNV NM_025597:c.G120A:p.K40K exonic Ndufb3 synonymous SNV uc007bck.1:c.G120A:p.K40K exonic ENSMUSG00000026032 synonymous SNV ENSMUST00000027193:c.G120A:p.K40K 1qC1.3 NA NA chr1 58648055 GAAxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 143 0 0 88.12212 0.551724 0.02 1.177904 26 32 769 902 60 60 0 0 GG 15.93686 53 0 1508 0 KEEP + Ndufb3 YES MNNG_1 chr1 59902556 59902556 A C intronic Bmpr2 NA NA intronic Bmpr2 NA NA intronic ENSMUSG00000067336 NA NA 1qC1.3 NA NA chr1 59902556 GTAxGTT A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 48 0 0 10.483885 0.454545 0.02 -0.113895 6 5 178 114 60 60 0 0 AA 9.017775 30 0 829 0 KEEP + Bmpr2 NO MNNG_1 chr1 61051545 61051545 C T exonic Icos synonymous SNV NM_017480:c.C489T:p.I163I exonic Icos synonymous SNV uc011wlz.1:c.C489T:p.I163I exonic ENSMUSG00000026009 synonymous SNV ENSMUST00000027162:c.C489T:p.I163I 1qC2 NA NA chr1 61051545 CATxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 142 0 0 44.198248 0.404762 0.02 -0.377113 25 17 734 484 60 60 0 0 CC 26.752745 89 0 2526 0 KEEP + Icos YES MNNG_1 chr1 63776786 63776786 G A intronic Mdh1b NA NA intronic Mdh1b NA NA intronic ENSMUSG00000025963 NA NA 1qC2 NA NA chr1 63776786 CCAxTTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 53 0 0 30.468099 0.55 0.02 -0.175397 9 11 265 312 60 60 0 0 GG 8.724075 29 0 832 0 KEEP - Mdh1b YES MNNG_1 chr1 66669793 66669793 C T exonic Unc80 nonsynonymous SNV NM_175510:c.C5230T:p.P1744S exonic Unc80 nonsynonymous SNV uc007bih.2:c.C5230T:p.P1744S exonic ENSMUSG00000055567 nonsynonymous SNV ENSMUST00000114009:c.C4897T:p.P1633S 1qC3 NA NA chr1 66669793 CCTxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 375 7 1 95.553722 0.348214 0.02 2.40894 73 39 2137 1084 60 60 0 0 CC 58.648423 195 0 5510 0 KEEP + Unc80 YES MNNG_1 chr1 68086854 68086854 G A exonic Erbb4 nonsynonymous SNV NM_010154:c.C3640T:p.P1214S exonic Erbb4 nonsynonymous SNV uc007bjb.1:c.C3640T:p.P1214S exonic ENSMUSG00000062209 nonsynonymous SNV ENSMUST00000097703:c.C3610T:p.P1204S 1qC3 NA NA chr1 68086854 CTGxCAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 67 0 0 26.085719 0.454545 0.02 -0.192931 12 10 347 279 60 60 0 0 GG 10.225971 34 0 935 0 KEEP - Erbb4 YES MNNG_1 chr1 71646844 71646844 C T intronic Fn1 NA NA intronic Fn1 NA NA intronic ENSMUSG00000026193 NA NA 1qC3 NA NA chr1 71646844 AGGxAGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053885 0.054137 0.995343 26 0 0 12.36783 0.625 0.02 -0.070002 3 5 86 123 60 60 0 0 CC 4.18942 14 0 365 0 KEEP - Fn1 YES MNNG_1 chr1 71683906 71683906 A T exonic Fn1 nonsynonymous SNV NM_001276408:c.T1739A:p.V580E exonic Fn1 nonsynonymous SNV uc007bju.1:c.T1739A:p.V580E exonic ENSMUSG00000026193 nonsynonymous SNV ENSMUST00000055226:c.T1739A:p.V580E 1qC3 NA NA chr1 71683906 TGCxCAA A T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 88 1 0 40.322934 0.441176 0.02 -0.298161 19 15 529 433 60 60 0 0 AA 12.329371 41 0 1101 0 KEEP - Fn1 NO MNNG_1 chr1 71692103 71692103 C T intronic Fn1 NA NA exonic Fn1 nonsynonymous SNV uc007bkd.1:c.G862A:p.G288R intronic ENSMUSG00000026193 NA NA 1qC3 NA NA chr1 71692103 TCCxCGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 70 0 0 28.391535 0.354839 0.02 -0.271878 20 11 587 319 60 60 0 0 CC 9.015389 30 0 809 0 KEEP - Fn1 YES MNNG_1 chr1 74205696 74205696 C T exonic Cxcr2 synonymous SNV NM_009909:c.C774T:p.V258V exonic Cxcr2 synonymous SNV uc007bll.1:c.C774T:p.V258V exonic ENSMUSG00000026180 synonymous SNV ENSMUST00000027372:c.C774T:p.V258V 1qC3 NA NA chr1 74205696 TGTxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387354 0.387407 0.999863 42 0 0 6.434246 0.157895 0.02 -0.175405 16 3 470 86 60 60 0 0 CC 6.016695 20 0 575 0 KEEP + Cxcr2 YES MNNG_1 chr1 74539432 74539432 T A intronic Usp37 NA NA intronic Usp37 NA NA intronic ENSMUSG00000033364 NA NA 1qC3 NA NA chr1 74539432 CATxCCT T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 37 0 0 11.721803 0.357143 0.02 -0.122765 9 5 259 133 60 60 0 0 TT 5.113398 17 0 473 0 KEEP - Usp37 NO MNNG_1 chr1 74616504 74616504 C T exonic Zfp142 nonsynonymous SNV NM_029888:c.G4396A:p.A1466T exonic Zfp142 nonsynonymous SNV uc007bml.1:c.G3691A:p.A1231T exonic ENSMUSG00000026135 nonsynonymous SNV ENSMUST00000027315:c.G4705A:p.A1569T 1qC3 NA NA chr1 74616504 GGGxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999998 83 2 0 63.002068 0.605263 0.02 -0.341843 15 23 433 631 60 60 0 0 CC 9.925981 33 0 920 0 KEEP - Zfp142 YES MNNG_1 chr1 75141233 75141233 C T exonic Fam134a nonsynonymous SNV NM_170755:c.C578T:p.A193V exonic Fam134a nonsynonymous SNV uc007bnt.1:c.C578T:p.A193V exonic ENSMUSG00000049339 nonsynonymous SNV ENSMUST00000060113:c.C578T:p.A193V 1qC3 NA NA chr1 75141233 TGGxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 219 8 0 63.203722 0.3 0.02 0.888462 63 27 1857 742 60 60 0 1 CC 27.058944 90 0 2495 0 KEEP + Fam134a YES MNNG_1 chr1 75176300 75176300 C T exonic Abcb6 synonymous SNV NM_023732:c.G393A:p.Q131Q exonic Abcb6 synonymous SNV uc007bnx.1:c.G393A:p.Q131Q exonic ENSMUSG00000026198 synonymous SNV ENSMUST00000027396:c.G393A:p.Q131Q 1qC3 NA NA chr1 75176300 TGCxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 115 2 0 40.467007 0.333333 0.02 -0.438415 32 16 902 461 60 60 0 0 CC 14.726242 49 0 1350 0 KEEP - Abcb6 YES MNNG_1 chr1 75425623 75425623 C T intronic Speg NA NA intronic Speg NA NA intronic ENSMUSG00000026207 NA NA 1qC4 NA NA chr1 75425623 CTCxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970819 0.97082 0.999999 98 1 0 64.195361 0.45283 0.02 1.328749 29 24 838 686 60 60 0 0 CC 10.828828 36 0 1011 0 KEEP + Speg YES MNNG_1 chr1 75439714 75439714 C T UTR3 Gmppa NA NA UTR3 Gmppa NA NA UTR3 ENSMUSG00000033021 NA NA 1qC4 NA NA chr1 75439714 TTCxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 198 3 0 66.883655 0.38806 0.02 1.180509 41 26 1171 739 70 60 0 0 CC 30.951429 103 0 2821 0 KEEP + Gmppa YES MNNG_1 chr1 82486309 82486309 C T exonic Col4a4 synonymous SNV NM_007735:c.G2658A:p.G886G exonic Col4a4 synonymous SNV uc007brt.1:c.G2658A:p.G886G exonic ENSMUSG00000067158 synonymous SNV ENSMUST00000087050:c.G2658A:p.G886G 1qC5 NA NA chr1 82486309 TTCxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877601 0.877708 0.999879 73 0 0 31.65085 0.325 0.02 -0.350637 27 13 775 364 60 60 0 0 CC 6.617556 22 0 616 0 KEEP - Col4a4 YES MNNG_1 chr1 82697407 82697407 C T exonic Col4a3 nonsynonymous SNV NM_007734:c.C3821T:p.P1274L exonic Col4a3 nonsynonymous SNV uc007brv.1:c.C3821T:p.P1274L exonic ENSMUSG00000079465 nonsynonymous SNV ENSMUST00000113457:c.C3821T:p.P1274L 1qC5 NA NA chr1 82697407 CACxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 101 1 0 42.890631 0.34 0.02 -0.438497 33 17 962 487 60 60 0 0 CC 12.333234 41 0 1158 0 KEEP + Col4a3 YES MNNG_1 chr1 85153379 85153379 C T intergenic "A530032D15Rik(dist=46951),Gm7609(dist=42807)" NA NA intronic "A530032D15Rik,C130026I21Rik,Csprs" NA NA intronic ENSMUSG00000052477 NA NA 1qC5 "Score=0.981803;Name=No.314,chr1:87373564" NA chr1 85153379 CTTxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 122 1 29 15.80945 0.428571 0.02 -0.122783 8 6 237 171 60 60 0 0 CC 24.665492 82 0 2321 0 KEEP - A530032D15Rik YES MNNG_1 chr1 89049394 89049394 C T exonic Ecel1 nonsynonymous SNV NM_001277925:c.G1184A:p.R395K exonic Ecel1 nonsynonymous SNV uc007bwc.1:c.G1184A:p.R395K exonic ENSMUSG00000026247 nonsynonymous SNV ENSMUST00000027463:c.G1184A:p.R395K 1qD NA NA chr1 89049394 CACxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926519 0.92664 0.999869 76 0 0 52.912017 0.444444 0.02 -0.394657 25 20 748 568 60 60 0 0 CC 6.317179 21 0 597 0 KEEP - Ecel1 YES MNNG_1 chr1 89275522 89275522 C T intronic Gigyf2 NA NA intronic Gigyf2 NA NA intronic ENSMUSG00000048000 NA NA 1qD NA NA chr1 89275522 TCCxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16171 0.162467 0.995343 28 0 0 7.201611 0.25 0.02 -0.113992 9 3 249 87 60 60 0 0 CC 4.210965 14 0 388 0 KEEP + Gigyf2 YES MNNG_1 chr1 89283322 89283322 C T exonic Kcnj13 nonsynonymous SNV NM_001110227:c.G752A:p.S251N exonic Kcnj13 nonsynonymous SNV uc007bwu.2:c.G752A:p.S251N exonic ENSMUSG00000079436 nonsynonymous SNV ENSMUST00000113212:c.G752A:p.S251N 1qD NA NA chr1 89283322 GGAxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 90 1 0 26.086339 0.454545 0.02 -0.192914 12 10 335 279 60 60 0 0 CC 17.144457 57 0 1594 0 KEEP + Kcnj13 YES MNNG_1 chr1 89952303 89952303 C G exonic Ugt1a10 nonsynonymous SNV NM_201641:c.C247G:p.L83V exonic Ugt1a10 nonsynonymous SNV uc007bya.1:c.C247G:p.L83V exonic ENSMUSG00000090165 nonsynonymous SNV ENSMUST00000113142:c.C247G:p.L83V 1qD "Score=0.961098;Name=No.335,chr1:89920788" NA chr1 89952303 ACTxTGG C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 149 4 3 39.505754 0.363636 0.02 -0.394617 28 16 816 444 60 60 0 0 CC 27.676129 92 0 2639 0 KEEP + Ugt1a10 NO MNNG_1 chr1 90003630 90003630 C T exonic Ugt1a6b synonymous SNV NM_201410:c.C114T:p.H38H exonic Ugt1a6b synonymous SNV uc007byd.2:c.C114T:p.H38H exonic "ENSMUSG00000054545,ENSMUSG00000090145" synonymous SNV ENSMUST00000113137:c.C114T:p.H38H 1qD "Score=0.946245;Name=No.341,chr1:90031557" NA chr1 90003630 CCAxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 98 3 6 74.818911 0.6 0.02 -0.403386 18 27 521 751 60 60 0 0 CC 12.029957 40 0 1109 0 KEEP + Ugt1a6b YES MNNG_1 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 319 2 0 14.401826 0.067227 0.02 2.500143 111 8 2913 233 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO MNNG_1 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 290 0 0 17.991153 0.102273 0.02 1.021767 79 9 2300 263 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 YES MNNG_1 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 113 0 0 10.082029 0.238095 0.02 -0.192856 16 5 436 127 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 NO MNNG_1 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 190 1 0 11.67663 0.077778 0.02 0.905959 83 7 2421 190 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO MNNG_1 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 287 3 0 10.535772 0.067416 0.02 2.597276 83 6 2223 172 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO MNNG_1 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 314 2 0 10.211503 0.058824 0.02 1.921418 112 7 3211 184 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a YES MNNG_1 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 198 2 0 15.903379 0.088889 0.02 0.960443 82 8 2308 238 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO MNNG_1 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 72 0 0 10.560604 0.192308 0.02 -0.245529 21 5 589 137 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a YES MNNG_1 chr1 90154450 90154450 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154450 CGCxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999404 0.999407 0.999997 134 3 0 17.136525 0.111111 0.02 1.074422 72 9 2095 251 60 60 0 0 CC 8.418795 28 0 764 0 KEEP + Mroh2a YES MNNG_1 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 132 2 0 9.401772 0.09434 0.02 1.230491 48 5 1317 142 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO MNNG_1 chr1 90156608 90156608 C T UTR3 "Hjurp,Mroh2a" NA NA UTR3 "A730008H23Rik,Heatr7b1,Hjurp" NA NA UTR3 ENSMUSG00000079429 NA NA 1qD NA NA chr1 90156608 GCCxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 176 0 0 8.975279 0.071429 0.02 1.046724 65 5 1800 144 60 60 0 0 CC 20.714846 69 0 1930 0 KEEP + Hjurp YES MNNG_1 chr1 90597664 90597664 C T exonic Arl4c synonymous SNV NM_177305:c.G576A:p.R192R exonic Arl4c synonymous SNV uc007byt.1:c.G576A:p.R192R exonic ENSMUSG00000049866 synonymous SNV ENSMUST00000051236:c.G576A:p.R192R 1qD NA NA chr1 90597664 TTAxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 48 0 0 24.209188 0.6 0.02 -0.131481 6 9 156 243 60 60 0 0 CC 7.502322 25 0 655 0 KEEP - Arl4c YES MNNG_1 chr1 90597831 90597831 C T exonic Arl4c nonsynonymous SNV NM_177305:c.G409A:p.V137M exonic Arl4c nonsynonymous SNV uc007byt.1:c.G409A:p.V137M exonic ENSMUSG00000049866 nonsynonymous SNV ENSMUST00000051236:c.G409A:p.V137M 1qD NA NA chr1 90597831 CCAxCGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 154 3 0 78.074301 0.457143 0.02 1.081746 38 32 1059 838 60 60 0 0 CC 21.889305 73 0 1935 0 KEEP - Arl4c YES MNNG_1 chr1 92830019 92830019 C T exonic Mlph synonymous SNV NM_053015:c.C798T:p.P266P exonic Mlph synonymous SNV uc007bzm.2:c.C798T:p.P266P exonic ENSMUSG00000026303 synonymous SNV ENSMUST00000027528:c.C798T:p.P266P 1qD NA NA chr1 92830019 ACCxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.91817 0.918171 0.999999 97 0 0 47.35836 0.409091 0.02 -0.38586 26 18 750 517 60 60 0 0 CC 10.82841 36 0 1014 0 KEEP + Mlph YES MNNG_1 chr1 93281792 93281792 C T intronic Ilkap NA NA intronic Ilkap NA NA intronic ENSMUSG00000026309 NA NA 1qD NA NA chr1 93281792 CGTxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 116 2 0 19.850785 0.307692 0.02 -0.227876 18 8 513 230 60 60 0 0 CC 22.849841 76 0 2133 0 KEEP - Ilkap YES MNNG_1 chr1 93284910 93284910 C T intronic Ilkap NA NA UTR5 Ilkap NA NA intronic ENSMUSG00000026309 NA NA 1qD NA NA chr1 93284910 AAAxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 54 0 0 10.398861 0.5 0.02 -0.070152 4 4 115 109 60 60 0 0 CC 12.63228 42 0 1162 0 KEEP - Ilkap YES MNNG_1 chr1 93309642 93309642 C T exonic Hes6 nonsynonymous SNV NM_019479:c.G73A:p.D25N exonic Hes6 nonsynonymous SNV uc007cat.2:c.G73A:p.D25N exonic ENSMUSG00000067071 nonsynonymous SNV ENSMUST00000086851:c.G73A:p.D25N 1qD NA NA chr1 93309642 GGTxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987317 0.987943 0.999366 88 0 0 45.629308 0.316667 0.02 1.170541 41 19 1160 528 60 60 0 0 CC 5.088663 17 0 439 0 KEEP - Hes6 YES MNNG_1 chr1 93867670 93867670 C T intronic Hdac4 NA NA intronic Hdac4 NA NA intronic ENSMUSG00000026313 NA NA 1qD NA NA chr1 93867670 GAGxTAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139826 0.139832 0.999957 39 0 0 9.976578 0.363636 0.02 -0.105242 7 4 207 112 60 60 0 0 CC 7.821007 26 0 734 0 KEEP - Hdac4 YES MNNG_1 chr1 94728655 94728655 G A exonic Gpc1 synonymous SNV NM_016696:c.G147A:p.V49V exonic Gpc1 synonymous SNV uc007cbs.1:c.G147A:p.V49V exonic ENSMUSG00000034220 synonymous SNV ENSMUST00000045970:c.G147A:p.V49V 1qD NA NA chr1 94728655 TGTxCCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 130 0 0 101.525874 0.685185 0.02 1.123914 17 37 481 985 60 60 0 0 GG 14.138221 47 0 1335 0 KEEP + Gpc1 YES MNNG_1 chr1 94840523 94840523 C T ncRNA_intronic 9430060I03Rik NA NA ncRNA_intronic 9430060I03Rik NA NA intronic ENSMUSG00000026270 NA NA 1qD NA NA chr1 94840523 TAAxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973923 0.973965 0.999957 81 0 0 89.705113 0.592593 0.02 1.221659 22 32 648 903 60 60 0 0 CC 7.808204 26 0 719 0 KEEP - 9430060I03Rik YES MNNG_1 chr1 94921139 94921139 C T intronic Kif1a NA NA intronic Kif1a NA NA intronic ENSMUSG00000014602 NA NA 1qD NA NA chr1 94921139 GCCxACT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 192 5 0 95.880885 0.45679 0.02 1.083331 44 37 1285 1025 60 60 0 0 CC 24.344476 81 0 2268 0 KEEP - Kif1a YES MNNG_1 chr1 9736562 9736562 C T exonic Vcpip1 nonsynonymous SNV NM_173443:c.G1676A:p.G559E exonic Vcpip1 nonsynonymous SNV uc007ags.1:c.G1676A:p.G559E exonic ENSMUSG00000045210 nonsynonymous SNV ENSMUST00000057438:c.G1676A:p.G559E 1qA2 NA NA chr1 9736562 TCTxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 182 4 0 75.748762 0.460317 0.02 1.142741 34 29 1001 808 60 60 0 0 CC 27.365543 91 0 2580 0 KEEP - Vcpip1 YES MNNG_1 chr2 10023685 10023685 G A intronic Itih2 NA NA intronic Itih2 NA NA intronic ENSMUSG00000037254 NA NA 2qA1 NA NA chr2 10023685 AAAxGGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 66 0 0 25.144819 0.357143 0.02 -0.24556 18 10 527 283 60 60 0 0 GG 9.924653 33 0 924 0 KEEP - Itih2 YES MNNG_1 chr2 112107150 112107150 G A exonic Slc12a6 nonsynonymous SNV NM_133649:c.G172A:p.E58K exonic Slc12a6 nonsynonymous SNV uc008los.2:c.G172A:p.E58K exonic ENSMUSG00000027130 nonsynonymous SNV ENSMUST00000028549:c.G172A:p.E58K 2qE3 NA NA chr2 112107150 AGTxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.521574 0.522161 0.998875 64 0 0 39.195569 0.583333 0.02 -0.210479 10 14 297 396 60 60 0 0 GG 8.422938 28 0 798 0 KEEP + Slc12a6 YES MNNG_1 chr2 112596448 112596448 G A exonic Ryr3 nonsynonymous SNV NM_177652:c.C8213T:p.P2738L exonic Ryr3 nonsynonymous SNV uc008lpg.1:c.C8213T:p.P2738L exonic ENSMUSG00000057378 nonsynonymous SNV ENSMUST00000080673:c.C8153T:p.P2718L 2qE3 NA NA chr2 112596448 AGAxGGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 89 0 0 44.927385 0.414634 0.02 -0.368345 24 17 700 489 60 60 0 0 GG 10.82715 36 0 1002 0 KEEP - Ryr3 YES MNNG_1 chr2 112620135 112620135 G A exonic Ryr3 synonymous SNV NM_177652:c.C6948T:p.R2316R exonic Ryr3 synonymous SNV uc008lpg.1:c.C6948T:p.R2316R exonic ENSMUSG00000057378 synonymous SNV ENSMUST00000080673:c.C6888T:p.R2296R 2qE3 NA NA chr2 112620135 ACAxCGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 112 0 0 34.919836 0.378378 0.02 -0.324469 23 14 673 389 60 60 0 0 GG 18.34958 61 0 1731 0 KEEP - Ryr3 YES MNNG_1 chr2 121819106 121819106 C T exonic Ctdspl2 synonymous SNV NM_212450:c.C904T:p.L302L exonic Ctdspl2 synonymous SNV uc008lzx.1:c.C754T:p.L252L exonic ENSMUSG00000033411 synonymous SNV ENSMUST00000110572:c.C691T:p.L231L 2qE5 NA NA chr2 121819106 AGTxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 130 2 0 26.947568 0.5 0.02 -0.175402 10 10 299 282 60 60 0 0 CC 22.857942 76 0 2177 0 KEEP + Ctdspl2 YES MNNG_1 chr2 122293545 122293545 C T upstream Bambi-ps1 NA NA upstream Bambi-ps1 NA NA upstream ENSMUSG00000081219 NA NA 2qE5 NA NA chr2 122293545 TCTxCGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 83 2 0 77.916118 0.666667 0.02 -0.36815 14 28 416 762 60 60 0 0 CC 8.413849 28 0 767 0 KEEP NA Bambi-ps1 YES MNNG_1 chr2 125175942 125175942 A G intronic Fbn1 NA NA intronic Fbn1 NA NA intronic ENSMUSG00000027204 NA NA 2qF1 NA NA chr2 125175942 GTGxTGT A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 221 2 0 81.722766 0.430556 0.02 1.252377 41 31 1143 883 60 60 0 0 AA 34.272832 114 0 3133 0 KEEP - Fbn1 NO MNNG_1 chr2 128474217 128474217 C T exonic Anapc1 synonymous SNV NM_008569:c.G3030A:p.E1010E exonic Anapc1 synonymous SNV uc008mgq.2:c.G3030A:p.E1010E exonic ENSMUSG00000014355 synonymous SNV ENSMUST00000014499:c.G3030A:p.E1010E 2qF1 NA NA chr2 128474217 CTCxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 116 2 0 56.912531 0.466667 0.02 -0.394659 24 21 705 604 60 60 0 0 CC 16.544771 55 0 1560 0 KEEP - Anapc1 YES MNNG_1 chr2 13399674 13399674 C T intronic Cubn NA NA intronic Cubn NA NA intronic ENSMUSG00000026726 NA NA 2qA1 NA NA chr2 13399674 TCCxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 118 0 0 43.697326 0.5 0.02 -0.280602 16 16 448 457 60 60 0 0 CC 21.043311 70 0 1938 0 KEEP - Cubn YES MNNG_1 chr2 147536813 147536813 C T ncRNA_exonic A530006G24Rik NA NA ncRNA_exonic AK079921 NA NA ncRNA_exonic ENSMUSG00000051986 NA NA 2qG2 NA NA chr2 147536813 GTTxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999998 94 1 0 60.156122 0.511628 0.02 -0.385795 21 22 592 626 60 60 0 0 CC 9.918633 33 0 906 0 KEEP + A530006G24Rik YES MNNG_1 chr2 150785583 150785583 C T exonic Ninl nonsynonymous SNV NM_207204:c.G1403A:p.R468K exonic Ninl nonsynonymous SNV uc008mut.2:c.G1403A:p.R468K exonic ENSMUSG00000068115 nonsynonymous SNV ENSMUST00000150595:c.G500A:p.R167K 2qG3 NA NA chr2 150785583 GCTxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851864 0.851984 0.99986 67 0 0 55.164933 0.567568 0.02 -0.332684 16 21 481 562 60 60 0 0 CC 5.714255 19 0 537 0 KEEP - Ninl YES MNNG_1 chr2 151336841 151336841 C T UTR3 Nsfl1c NA NA UTR3 Nsfl1c NA NA UTR3 ENSMUSG00000027455 NA NA 2qG3 NA NA chr2 151336841 CTCxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959772 0.959859 0.999909 80 0 0 55.043346 0.42 0.02 -0.438505 29 21 858 598 60 60 0 0 CC 7.218928 24 0 670 0 KEEP + Nsfl1c YES MNNG_1 chr2 154206393 154206393 C T intronic Snta1 NA NA intronic Snta1 NA NA intronic ENSMUSG00000027488 NA NA 2qH1 NA NA chr2 154206393 GTTxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 286 6 0 146.426532 0.410072 0.02 2.154013 82 57 2415 1601 60 60 0 0 CC 28.868707 96 0 2708 0 KEEP - Snta1 YES MNNG_1 chr2 156846391 156846391 C T exonic 9830001H06Rik synonymous SNV NM_001164663:c.G4353A:p.K1451K exonic 9830001H06Rik synonymous SNV uc008nol.2:c.G4353A:p.K1451K exonic ENSMUSG00000055485 synonymous SNV ENSMUST00000069098:c.G4353A:p.K1451K 2qH1 NA NA chr2 156846391 GTCxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760782 0.760887 0.999863 60 0 0 48.307803 0.545455 0.02 -0.289366 15 18 434 496 60 60 0 0 CC 6.01605 20 0 564 0 KEEP - 9830001H06Rik YES MNNG_1 chr2 157645249 157645249 C T exonic Ctnnbl1 synonymous SNV NM_025680:c.C942T:p.F314F exonic Ctnnbl1 synonymous SNV uc008nph.2:c.C942T:p.F314F exonic ENSMUSG00000027649 synonymous SNV ENSMUST00000029178:c.C942T:p.F314F 2qH1 NA NA chr2 157645249 GTTxGAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490538 0.490544 0.999988 61 2 0 27.412432 0.478261 0.02 -0.201377 12 11 327 291 60 60 0 0 CC 8.115329 27 0 701 0 KEEP + Ctnnbl1 YES MNNG_1 chr2 157955097 157955097 C T exonic Tgm2 synonymous SNV NM_009373:c.G957A:p.E319E exonic Tgm2 synonymous SNV uc008npr.1:c.G957A:p.E319E exonic ENSMUSG00000037820 synonymous SNV ENSMUST00000103122:c.G957A:p.E319E 2qH1 NA NA chr2 157955097 GAAxTCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 298 2 0 222.461397 0.592857 0.02 2.136632 57 83 1642 2240 60 60 0 0 CC 31.566329 105 0 2918 0 KEEP - Tgm2 YES MNNG_1 chr2 158030456 158030456 C T exonic D630003M21Rik nonsynonymous SNV NM_001131021:c.G2336A:p.G779E exonic D630003M21Rik nonsynonymous SNV uc008npv.2:c.G2336A:p.G779E exonic ENSMUSG00000037813 nonsynonymous SNV ENSMUST00000046944:c.G2336A:p.G779E 2qH1 NA NA chr2 158030456 GTTxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 172 4 0 128.390487 0.485149 0.02 2.496449 52 49 1507 1354 60 60 0 0 CC 13.835634 46 0 1284 0 KEEP - D630003M21Rik YES MNNG_1 chr2 161401489 161401489 T A exonic Ptprt synonymous SNV NM_021464:c.A2802T:p.S934S exonic Ptprt synonymous SNV uc008nru.1:c.A429T:p.S143S exonic ENSMUSG00000053141 synonymous SNV ENSMUST00000109441:c.A2802T:p.S934S 2qH2 NA NA chr2 161401489 GTCxGAG T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 218 3 0 16.854132 0.135593 0.02 1.27611 51 8 1464 232 60 60 0 0 TT 33.688866 112 0 3128 0 KEEP - Ptprt NO MNNG_1 chr2 164617577 164617577 C T exonic Snx21 nonsynonymous SNV NM_133924:c.C782T:p.T261I exonic Snx21 nonsynonymous SNV uc008nwd.1:c.C602T:p.T201I exonic ENSMUSG00000050373 nonsynonymous SNV ENSMUST00000056181:c.C782T:p.T261I 2qH3 NA NA chr2 164617577 AGAxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99623 0.996233 0.999997 110 0 0 102.439813 0.573529 0.02 1.090618 29 39 811 1040 60 60 0 0 CC 8.392622 28 0 721 0 KEEP + Snx21 YES MNNG_1 chr2 164658666 164658666 C T exonic Neurl2 nonsynonymous SNV NM_001082974:c.G275A:p.S92N exonic Neurl2 nonsynonymous SNV uc008nwk.2:c.G275A:p.S92N exonic ENSMUSG00000039873 nonsynonymous SNV ENSMUST00000042775:c.G275A:p.S92N 2qH3 NA NA chr2 164658666 AGAxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 137 1 0 108.260752 0.625 0.02 1.107915 24 40 696 1076 60 60 0 0 CC 15.639515 52 0 1450 0 KEEP - Neurl2 YES MNNG_1 chr2 165179326 165179326 C T exonic Zfp663 nonsynonymous SNV NM_001005425:c.G472A:p.D158N exonic Zfp663 nonsynonymous SNV uc008nxo.1:c.G472A:p.D158N exonic ENSMUSG00000056824 nonsynonymous SNV ENSMUST00000073062:c.G472A:p.D158N 2qH3 NA NA chr2 165179326 CATxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 66 0 0 52.618263 0.666667 0.02 -0.236791 9 18 266 515 60 60 0 0 CC 10.227312 34 0 960 0 KEEP - Zfp663 YES MNNG_1 chr2 166674362 166674362 C T intronic Arfgef2 NA NA intronic Arfgef2 NA NA intronic ENSMUSG00000074582 NA NA 2qH3 NA NA chr2 166674362 AATxTTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 91 2 0 40.127998 0.483871 0.02 -0.280635 16 15 471 423 60 60 0 0 CC 14.739258 49 0 1386 0 KEEP + Arfgef2 YES MNNG_1 chr2 168043227 168043227 C T exonic Dpm1 nonsynonymous SNV NM_010072:c.G448A:p.G150R exonic Dpm1 nonsynonymous SNV uc008oas.1:c.G448A:p.G150R exonic ENSMUSG00000078919 nonsynonymous SNV ENSMUST00000109193:c.G292A:p.G98R 2qH3 NA NA chr2 168043227 TCCxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 258 1 0 41.647297 0.369565 0.02 -0.420921 29 17 846 467 60 60 0 0 CC 49.029488 163 0 4576 0 KEEP - Dpm1 YES MNNG_1 chr2 172203428 172203428 T C exonic Cstf1 nonsynonymous SNV NM_024199:c.T958C:p.Y320H exonic Cstf1 nonsynonymous SNV uc008ocp.1:c.T958C:p.Y320H exonic ENSMUSG00000027498 nonsynonymous SNV ENSMUST00000116375:c.T958C:p.Y320H 2qH3 NA NA chr2 172203428 AAGxACA T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 100 0 0 26.021594 0.22449 0.02 -0.429541 38 11 988 321 60 60 0 0 TT 13.530771 45 0 1185 0 KEEP + Cstf1 NO MNNG_1 chr2 172377035 172377035 C T exonic Tfap2c synonymous SNV NM_001159696:c.C294T:p.Y98Y exonic Tcfap2c synonymous SNV uc008ocz.2:c.C177T:p.Y59Y exonic ENSMUSG00000028640 synonymous SNV ENSMUST00000030391:c.C177T:p.Y59Y 2qH3 NA NA chr2 172377035 TTAxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 157 0 0 60.074172 0.305882 0.02 0.932389 59 26 1699 704 60 60 0 0 CC 15.623499 52 0 1415 0 KEEP + Tfap2c YES MNNG_1 chr2 172815432 172815432 C T exonic Spo11 nonsynonymous SNV NM_001083959:c.C815T:p.S272F exonic Spo11 nonsynonymous SNV uc008ode.1:c.C776T:p.S259F exonic ENSMUSG00000005883 nonsynonymous SNV ENSMUST00000109125:c.C776T:p.S259F 2qH3 NA NA chr2 172815432 TGTxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 309 4 0 68.567006 0.35 0.02 0.993857 52 28 1501 777 60 60 0 0 CC 52.9411 176 0 5047 0 KEEP + Spo11 YES MNNG_1 chr2 172859154 172859154 C T exonic Rbm38 synonymous SNV NM_019547:c.C558T:p.D186D exonic Rbm38 synonymous SNV uc008odh.1:c.C558T:p.D186D exonic ENSMUSG00000027510 synonymous SNV ENSMUST00000029014:c.C558T:p.D186D 2qH3 NA NA chr2 172859154 CGAxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 316 1 0 206.654828 0.506329 0.02 3.586921 78 80 2206 2161 60 60 0 0 CC 30.303797 101 0 2750 0 KEEP + Rbm38 YES MNNG_1 chr2 179150559 179150559 C T exonic 4930591A17Rik synonymous SNV NM_026596:c.C15T:p.D5D ncRNA_exonic AK019836 NA NA exonic ENSMUSG00000039138 synonymous SNV ENSMUST00000041998:c.C15T:p.D5D 2qH4 NA NA chr2 179150559 TGAxATT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 133 0 0 58.740183 0.470588 0.02 1.15065 27 24 743 626 60 60 0 0 CC 17.120348 57 0 1544 0 KEEP + 4930591A17Rik YES MNNG_1 chr2 180731175 180731175 C T exonic Col20a1 synonymous SNV NM_028518:c.C1050T:p.S350S exonic Col20a1 synonymous SNV uc008okp.2:c.C1050T:p.S350S exonic ENSMUSG00000016356 synonymous SNV ENSMUST00000080705:c.C1050T:p.S350S 2qH4 NA NA chr2 180731175 CAGxCGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.54878 0.552887 0.99257 34 1 0 34.780664 0.52 0.02 -0.219236 12 13 351 361 60 60 0 0 CC 2.406308 8 0 223 0 KEEP + Col20a1 YES MNNG_1 chr2 180816127 180816127 C T exonic Kcnq2 synonymous SNV NM_010611:c.G2244A:p.R748R exonic Kcnq2 synonymous SNV uc008okx.1:c.G1635A:p.R545R exonic ENSMUSG00000016346 synonymous SNV ENSMUST00000103050:c.G2160A:p.R720R 2qH4 NA NA chr2 180816127 CGAxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 234 0 0 177.868922 0.527132 0.02 2.189362 61 68 1697 1842 60 60 0 0 CC 19.239599 64 0 1746 0 KEEP - Kcnq2 YES MNNG_1 chr2 181432096 181432096 C T exonic 4930526D03Rik nonsynonymous SNV NM_199023:c.G265A:p.E89K exonic 4930526D03Rik nonsynonymous SNV uc008onh.1:c.G265A:p.E89K exonic ENSMUSG00000045794 nonsynonymous SNV ENSMUST00000052416:c.G265A:p.E89K 2qH4 NA NA chr2 181432096 ACTxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 85 0 0 64.298251 0.510638 0.02 -0.420952 23 24 691 670 60 60 0 0 CC 8.721881 29 0 812 0 KEEP - 4930526D03Rik YES MNNG_1 chr2 21748901 21748901 A G exonic Gpr158 nonsynonymous SNV NM_001004761:c.A3184G:p.K1062E exonic Gpr158 nonsynonymous SNV uc008inf.1:c.A3184G:p.K1062E exonic ENSMUSG00000045967 nonsynonymous SNV ENSMUST00000055946:c.A3184G:p.K1062E 2qA3 NA NA chr2 21748901 GACxAGA A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 58 0 0 38.714008 1 0.02 -0.105209 0 12 0 330 0 60 0 0 AA 12.031041 40 0 1104 0 KEEP + Gpr158 NO MNNG_1 chr2 24071287 24071287 C T intronic Il1f6 NA NA ncRNA_intronic Il1e NA NA intronic ENSMUSG00000026984 NA NA 2qA3 NA NA chr2 24071287 GGTxAAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 73 2 0 21.498205 0.5 0.02 -0.149088 8 8 235 225 60 60 0 0 CC 15.627494 52 0 1443 0 KEEP + Il1f6 YES MNNG_1 chr2 24561801 24561801 C T exonic Cacna1b nonsynonymous SNV NM_001042528:c.G1397A:p.R466K exonic Cacna1b nonsynonymous SNV uc008ipe.1:c.G1397A:p.R466K exonic ENSMUSG00000004113 nonsynonymous SNV ENSMUST00000041342:c.G1397A:p.R466K 2qA3 NA NA chr2 24561801 TTTxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036532 0.036766 0.993634 21 0 0 11.44813 0.666667 0.02 -0.052619 2 4 60 112 60 60 0 0 CC 3.609969 12 0 344 0 KEEP - Cacna1b YES MNNG_1 chr2 25347617 25347617 C T exonic Lcn12 nonsynonymous SNV NM_029958:c.G464A:p.R155K exonic Lcn12 nonsynonymous SNV uc008isg.1:c.G356A:p.R119K exonic ENSMUSG00000026943 nonsynonymous SNV ENSMUST00000114245:c.G356A:p.R119K 2qA3 NA NA chr2 25347617 AGTxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 168 0 0 113.497516 0.625 0.02 1.134172 24 40 681 1128 60 60 0 0 CC 26.168069 87 0 2463 0 KEEP - Lcn12 YES MNNG_1 chr2 25421852 25421852 C T exonic Mamdc4 nonsynonymous SNV NM_001081199:c.G2150A:p.G717D exonic Mamdc4 nonsynonymous SNV uc008iso.1:c.G2150A:p.G717D exonic ENSMUSG00000026941 nonsynonymous SNV ENSMUST00000114221:c.G1901A:p.G634D 2qA3 NA NA chr2 25421852 GCAxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 186 5 0 148.746367 0.555556 0.02 0.827485 44 55 1261 1521 60 60 0 0 CC 20.088328 67 0 1822 0 KEEP - Mamdc4 YES MNNG_1 chr2 28533753 28533753 C T intronic Tsc1 NA NA intronic Tsc1 NA NA intronic ENSMUSG00000026812 NA NA 2qA3 NA NA chr2 28533753 AGAxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 325 6 0 120.182757 0.511111 0.02 0.898549 44 46 1249 1254 60 60 0 0 CC 54.140177 180 0 5003 0 KEEP + Tsc1 YES MNNG_1 chr2 29736460 29736460 C T exonic Cercam nonsynonymous SNV NM_207298:c.C1348T:p.P450S exonic Cercam nonsynonymous SNV uc008jai.1:c.C1348T:p.P450S exonic ENSMUSG00000039787 nonsynonymous SNV ENSMUST00000047521:c.C1348T:p.P450S 2qB NA NA chr2 29736460 AACxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999724 0.999726 0.999998 136 0 0 124.91025 0.523256 0.02 1.030532 41 45 1212 1293 60 60 0 0 CC 10.225088 34 0 931 0 KEEP + Cercam YES MNNG_1 chr2 30111335 30111335 C T exonic Lrrc8a nonsynonymous SNV NM_177725:c.C640T:p.R214W exonic Lrrc8a nonsynonymous SNV uc008jbu.2:c.C640T:p.R214W exonic ENSMUSG00000007476 nonsynonymous SNV ENSMUST00000113654:c.C640T:p.R214W 2qB NA NA chr2 30111335 CAGxGGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 329 5 0 99.162138 0.310606 0.02 2.198618 91 41 2329 1151 60 60 0 0 CC 41.747966 139 0 3371 0 KEEP + Lrrc8a YES MNNG_1 chr2 31033758 31033758 C T intronic Gpr107 NA NA intronic Gpr107 NA NA intronic ENSMUSG00000000194 NA NA 2qB NA NA chr2 31033758 CACxTTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 111 0 0 39.135366 0.416667 0.02 -0.315712 21 15 611 426 60 60 0 0 CC 18.348169 61 0 1708 0 KEEP + Gpr107 YES MNNG_1 chr2 31650092 31650092 C T exonic Abl1 nonsynonymous SNV NM_001112703:c.C1358T:p.T453I exonic Abl1 nonsynonymous SNV uc008jeb.2:c.C1358T:p.T453I exonic ENSMUSG00000026842 nonsynonymous SNV ENSMUST00000028190:c.C1301T:p.T434I 2qB NA NA chr2 31650092 CTAxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 134 2 0 59.467968 0.52381 0.02 -0.36831 20 22 571 616 60 60 0 0 CC 21.353293 71 0 1948 0 KEEP + Abl1 YES MNNG_1 chr2 31664183 31664183 C T exonic Qrfp nonsynonymous SNV NM_183424:c.G256A:p.A86T exonic Qrfp nonsynonymous SNV uc008jed.1:c.G256A:p.A86T exonic ENSMUSG00000043102 nonsynonymous SNV ENSMUST00000057407:c.G256A:p.A86T 2qB NA NA chr2 31664183 CGGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 166 2 0 115.433477 0.455446 0.02 2.496939 55 46 1494 1237 60 60 0 0 CC 14.737537 49 0 1351 0 KEEP - Qrfp YES MNNG_1 chr2 31795004 31795004 C T intronic Lamc3 NA NA intronic Lamc3 NA NA intronic ENSMUSG00000026840 NA NA 2qB NA NA chr2 31795004 ATTxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 158 1 0 77.997867 0.4 0.02 1.037764 45 30 1295 856 60 60 0 0 CC 17.745924 59 0 1660 0 KEEP + Lamc3 YES MNNG_1 chr2 31938135 31938135 C T exonic Fam78a nonsynonymous SNV NM_175511:c.G292A:p.E98K exonic Fam78a nonsynonymous SNV uc008jek.1:c.G292A:p.E98K exonic ENSMUSG00000050592 nonsynonymous SNV ENSMUST00000056406:c.G292A:p.E98K 2qB NA NA chr2 31938135 ACTxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899275 0.899314 0.999957 77 0 0 53.416213 0.47619 0.02 -0.368305 22 20 639 565 60 60 0 0 CC 7.7757 26 0 721 0 KEEP - Fam78a YES MNNG_1 chr2 32165077 32165077 C T UTR3 Dnm1 NA NA UTR3 "Dnm1,mKIAA4093" NA NA UTR3 ENSMUSG00000026825 NA NA 2qB NA NA chr2 32165077 CGGxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 171 5 0 73.824555 0.348315 0.02 0.898343 58 31 1592 840 60 60 0 0 CC 15.574781 52 0 1396 0 KEEP - Dnm1 YES MNNG_1 chr2 32639707 32639707 C T intronic 1700019L03Rik NA NA intronic "1700019L03Rik,Ptrh1" NA NA intronic "ENSMUSG00000038987,ENSMUSG00000053746" NA NA 2qB NA NA chr2 32639707 TGGxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963773 0.963774 0.999999 99 2 0 31.779374 0.3 0.02 1.248588 35 15 982 379 60 60 0 0 CC 10.820199 36 0 964 0 KEEP + 1700019L03Rik YES MNNG_1 chr2 32658269 32658269 C T intronic Stxbp1 NA NA intronic Stxbp1 NA NA intronic ENSMUSG00000026797 NA NA 2qB NA NA chr2 32658269 GCTxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.999859 30 0 0 10.39822 0.5 0.02 -0.070152 4 4 119 109 60 60 0 0 CC 5.414265 18 0 504 0 KEEP - Stxbp1 YES MNNG_1 chr2 35210983 35210983 C T intronic 4930568D16Rik NA NA intronic 4930568D16Rik NA NA intronic ENSMUSG00000026882 NA NA 2qB NA NA chr2 35210983 CATxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 59 1 0 18.036589 0.411765 0.02 -0.157857 10 7 294 197 60 60 0 0 CC 10.528515 35 0 992 0 KEEP - 4930568D16Rik YES MNNG_1 chr2 38425160 38425160 C T exonic Nek6 nonsynonymous SNV NM_001159631:c.C527T:p.A176V exonic Nek6 nonsynonymous SNV uc008jnn.2:c.C527T:p.A176V exonic ENSMUSG00000026749 nonsynonymous SNV ENSMUST00000054234:c.C527T:p.A176V 2qB NA NA chr2 38425160 CCGxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 175 4 0 95.954332 0.544118 0.02 1.055364 31 37 906 987 60 60 0 0 CC 22.528855 75 0 2039 0 KEEP + Nek6 YES MNNG_1 chr2 38565961 38565961 C T exonic Nr5a1 synonymous SNV NM_139051:c.G213A:p.Q71Q exonic Nr5a1 synonymous SNV uc008jnt.1:c.G444A:p.Q148Q exonic ENSMUSG00000026751 synonymous SNV ENSMUST00000028084:c.G213A:p.Q71Q 2qB NA NA chr2 38565961 CTTxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979524 0.979526 0.999997 98 0 0 50.690558 0.357143 0.02 1.204123 36 20 1048 570 60 60 0 0 CC 9.325702 31 0 888 0 KEEP - Nr5a1 YES MNNG_1 chr2 53050148 53050148 C T exonic Prpf40a nonsynonymous SNV NM_018785:c.G74A:p.G25D exonic "FBP11,Prpf40a" nonsynonymous SNV uc008jrk.1:c.G74A:p.G25D exonic ENSMUSG00000061136 nonsynonymous SNV ENSMUST00000076313:c.G74A:p.G25D 2qC1.1 NA NA chr2 53050148 GGAxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 212 1 0 148.106766 0.585106 0.02 0.8711 39 55 1123 1496 60 60 0 0 CC 28.56342 95 0 2583 0 KEEP - Prpf40a YES MNNG_1 chr2 53937582 53937582 C T exonic Rprm nonsynonymous SNV NM_023396:c.G134A:p.G45D exonic Rprm nonsynonymous SNV uc008jrp.1:c.G134A:p.G45D exonic ENSMUSG00000075334 nonsynonymous SNV ENSMUST00000100089:c.G134A:p.G45D 2qC1.1 NA NA chr2 53937582 GGGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954489 0.954491 0.999997 96 0 0 45.665574 0.395833 0.02 -0.42089 29 19 835 506 60 60 0 0 CC 9.623173 32 0 870 0 KEEP - Rprm YES MNNG_1 chr2 5825036 5825036 A T exonic Dhtkd1 synonymous SNV NM_001081131:c.T2292A:p.V764V exonic Dhtkd1 synonymous SNV uc008iga.1:c.T2292A:p.V764V exonic ENSMUSG00000025815 synonymous SNV ENSMUST00000026924:c.T2292A:p.V764V 2qA1 NA NA chr2 5825036 TGCxACA A T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 81 0 0 43.598729 0.652174 0.02 -0.201701 8 15 227 429 60 60 0 0 AA 13.83541 46 0 1266 0 KEEP - Dhtkd1 NO MNNG_1 chr2 5838711 5838711 C G intronic Dhtkd1 NA NA intronic "Dhtkd1,mKIAA1630" NA NA intronic ENSMUSG00000025815 NA NA 2qA1 NA NA chr2 5838711 AGGxTTC C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 67 0 0 43.332434 0.517241 0.02 -0.263118 14 15 409 449 70 70 0 0 CC 8.421358 28 0 770 0 KEEP - Dhtkd1 NO MNNG_1 chr2 59675129 59675129 C T intronic Tanc1 NA NA intronic Tanc1 NA NA intronic ENSMUSG00000035168 NA NA 2qC1.1 NA NA chr2 59675129 TGGxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 125 4 0 63.324857 0.416667 0.02 1.160302 35 25 1020 691 60 60 0 0 CC 12.632351 42 0 1157 0 KEEP + Tanc1 YES MNNG_1 chr2 59675293 59675293 C T intronic Tanc1 NA NA intronic Tanc1 NA NA intronic ENSMUSG00000035168 NA NA 2qC1.1 NA NA chr2 59675293 CTTxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 52 1 0 32.307684 0.521739 0.02 -0.210455 11 12 314 335 60 60 0 0 CC 6.918688 23 0 651 0 KEEP + Tanc1 YES MNNG_1 chr2 60507263 60507263 C T exonic Itgb6 nonsynonymous SNV NM_021359:c.G242A:p.R81H exonic Itgb6 nonsynonymous SNV uc008juj.2:c.G242A:p.R81H exonic ENSMUSG00000026971 nonsynonymous SNV ENSMUST00000059888:c.G242A:p.R81H 2qC1.2 NA NA chr2 60507263 ATGxGGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 67 2 0 20.645396 0.444444 0.02 -0.166604 10 8 279 222 60 60 0 0 CC 10.183201 34 0 839 0 KEEP - Itgb6 YES MNNG_1 chr2 66073696 66073696 C T exonic Ttc21b synonymous SNV NM_001047604:c.G1119A:p.Q373Q exonic Ttc21b synonymous SNV uc008jwy.1:c.G825A:p.Q275Q exonic ENSMUSG00000034848 synonymous SNV ENSMUST00000102718:c.G1119A:p.Q373Q 2qC1.3 NA NA chr2 66073696 CAAxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 99 2 0 20.169805 0.4 0.02 -0.184158 12 8 351 222 60 60 0 0 CC 16.542259 55 0 1542 0 KEEP - Ttc21b YES MNNG_1 chr2 66371137 66371137 C T exonic Scn9a nonsynonymous SNV NM_018852:c.G2826A:p.M942I exonic Scn9a nonsynonymous SNV uc008jxe.2:c.G2466A:p.M822I exonic ENSMUSG00000075316 nonsynonymous SNV ENSMUST00000112354:c.G2820A:p.M940I 2qC1.3 NA NA chr2 66371137 CACxATG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 179 4 0 44.79324 0.367347 0.02 1.346276 31 18 903 502 60 60 0 0 CC 27.4152 96 1 2714 13 KEEP + Scn9a YES MNNG_1 chr2 71066742 71066742 A G exonic Dync1i2 synonymous SNV NM_001198874:c.A312G:p.G104G exonic "Dncic2,Dync1i2" synonymous SNV uc008kah.2:c.A312G:p.G104G exonic ENSMUSG00000027012 synonymous SNV ENSMUST00000081710:c.A312G:p.G104G 2qC2 NA NA chr2 71066742 GGGxTCT A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999999 50 0 0 23.013452 0.727273 0.02 -0.096434 3 8 78 220 60 60 0 0 AA 10.525531 35 0 943 0 KEEP + Dync1i2 NO MNNG_1 chr2 83760904 83760904 C T exonic Zswim2 synonymous SNV NM_027964:c.G747A:p.K249K exonic Zswim2 synonymous SNV uc008kif.1:c.G747A:p.K249K exonic ENSMUSG00000034552 synonymous SNV ENSMUST00000038223:c.G747A:p.K249K 2qD NA NA chr2 83760904 ACAxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 91 0 0 59.783639 0.6 0.02 -0.315712 14 21 405 600 60 60 0 0 CC 12.630184 42 0 1158 0 KEEP - Zswim2 YES MNNG_1 chr2 84461057 84461057 C T exonic Ctnnd1 nonsynonymous SNV NM_001085449:c.G52A:p.G18R exonic Ctnnd1 nonsynonymous SNV uc008kis.1:c.G52A:p.G18R exonic ENSMUSG00000034101 nonsynonymous SNV ENSMUST00000099941:c.G52A:p.G18R 2qD NA NA chr2 84461057 CTCxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.999859 45 0 0 45.314814 0.727273 0.02 -0.192819 6 16 174 433 60 60 0 0 CC 5.415016 18 0 518 0 KEEP - Ctnnd1 YES MNNG_1 chr2 88518823 88518823 C T exonic Olfr1193 synonymous SNV NM_001011517:c.C810T:p.F270F exonic Olfr1193 synonymous SNV uc008kqa.1:c.C810T:p.F270F exonic ENSMUSG00000060827 synonymous SNV ENSMUST00000081697:c.C810T:p.F270F 2qD "Score=0.941217;Name=No.75257,chr2:88459096" NA chr2 88518823 CTTxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 202 1 0 88.044617 0.464789 0.02 1.072642 38 33 1085 936 60 60 0 0 CC 35.799257 119 0 3425 0 KEEP + Olfr1193 YES MNNG_1 chr2 89246830 89246830 G A exonic Olfr1238 synonymous SNV NM_146790:c.C405T:p.N135N exonic Olfr1238 synonymous SNV uc008krk.1:c.C405T:p.N135N exonic ENSMUSG00000075089 synonymous SNV ENSMUST00000099781:c.C405T:p.N135N 2qE1 NA NA chr2 89246830 CCGxTTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 86 0 0 24.88975 0.416667 0.02 -0.210441 14 10 400 272 60 60 0 0 GG 15.335059 51 0 1386 0 KEEP - Olfr1238 YES MNNG_1 chr2 89629093 89629093 A C exonic Olfr1254 nonsynonymous SNV NM_146476:c.T415G:p.C139G exonic Olfr1254 nonsynonymous SNV uc008kry.1:c.T415G:p.C139G exonic ENSMUSG00000075074 nonsynonymous SNV ENSMUST00000099764:c.T415G:p.C139G 2qE1 NA NA chr2 89629093 TGCxAAC A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 53 2 0 20.136193 0.444444 0.02 -0.157734 10 8 280 217 60 60 0 0 AA 9.323899 31 0 853 0 KEEP - Olfr1254 NO MNNG_1 chr2 90961175 90961175 C T intronic Mybpc3 NA NA intronic Mybpc3 NA NA intronic ENSMUSG00000002100 NA NA 2qE1 NA NA chr2 90961175 CTGxTCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 215 2 0 109.64051 0.597015 0.02 1.107753 27 40 799 1102 60 60 0 0 CC 33.347294 111 0 3071 0 KEEP + Mybpc3 YES MNNG_1 chr3 100729249 100729249 C T exonic Trim45 nonsynonymous SNV NM_001165952:c.C874T:p.R292W exonic Trim45 nonsynonymous SNV uc008qqy.2:c.C874T:p.R292W exonic ENSMUSG00000033233 nonsynonymous SNV ENSMUST00000037409:c.C874T:p.R292W 3qF2.2 NA NA chr3 100729249 CACxGGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998463 0.998465 0.999998 125 0 0 100.178249 0.5 0.02 1.144831 37 37 969 1048 60 60 0 0 CC 9.91638 33 0 831 0 KEEP + Trim45 YES MNNG_1 chr3 100876804 100876804 C T exonic Ptgfrn nonsynonymous SNV NM_011197:c.G1142A:p.G381E exonic Ptgfrn nonsynonymous SNV uc008qre.1:c.G1142A:p.G381E exonic ENSMUSG00000027864 nonsynonymous SNV ENSMUST00000102694:c.G1142A:p.G381E 3qF2.2 NA NA chr3 100876804 TGTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 88 0 0 40.611186 0.380952 0.02 -0.368317 26 16 755 451 60 60 0 0 CC 10.528531 35 0 993 0 KEEP - Ptgfrn YES MNNG_1 chr3 103884158 103884158 C T intronic Magi3 NA NA intronic Magi3 NA NA intronic ENSMUSG00000052539 NA NA 3qF2.2 "Score=0.992686;Name=No.59095,chr15:25108868" NA chr3 103884158 GATxTCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 66 0 1 28.191708 0.354839 0.02 -0.271869 20 11 580 317 60 60 0 0 CC 8.423551 28 0 809 0 KEEP - Magi3 YES MNNG_1 chr3 103899050 103899050 G A exonic Magi3 nonsynonymous SNV NM_001159354:c.C497T:p.S166F exonic Magi3 nonsynonymous SNV uc008qua.2:c.C497T:p.S166F exonic ENSMUSG00000052539 nonsynonymous SNV ENSMUST00000064371:c.C497T:p.S166F 3qF2.2 NA NA chr3 103899050 ACAxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 109 0 0 49.046347 0.5 0.02 -0.3245 18 18 538 513 60 60 0 0 GG 17.448286 58 0 1665 0 KEEP - Magi3 YES MNNG_1 chr3 104573622 104573622 C T UTR3 Fam19a3 NA NA UTR3 Fam19a3 NA NA UTR3 ENSMUSG00000055865 NA NA 3qF2.2 NA NA chr3 104573622 AGGxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 165 0 0 67.849708 0.421875 0.02 1.133997 37 27 1075 739 60 60 0 0 CC 20.150878 67 0 1860 0 KEEP - Fam19a3 YES MNNG_1 chr3 105934944 105934944 C T UTR3 Chia NA NA UTR3 Chia NA NA UTR3 ENSMUSG00000062778 NA NA 3qF2.2 NA NA chr3 105934944 ATGxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 217 4 0 19.384703 0.138889 0.02 1.055098 62 10 1787 272 60 60 0 0 CC 32.450725 108 0 2988 0 KEEP + Chia YES MNNG_1 chr3 106908346 106908346 C T exonic Kcna2 nonsynonymous SNV NM_008417:c.C1324T:p.P442S exonic Kcna2 nonsynonymous SNV uc008qws.1:c.C1324T:p.P442S exonic ENSMUSG00000040724 nonsynonymous SNV ENSMUST00000038695:c.C1324T:p.P442S 3qF2.3 NA NA chr3 106908346 TCCxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 59 2 0 23.61603 0.45 0.02 -0.17533 11 9 312 253 60 60 0 0 CC 9.024145 30 0 844 0 KEEP + Kcna2 YES MNNG_1 chr3 107021109 107021109 T A exonic Cym nonsynonymous SNV NM_001111143:c.A377T:p.N126I exonic Cym nonsynonymous SNV uc012cvu.1:c.A377T:p.N126I exonic ENSMUSG00000046213 nonsynonymous SNV ENSMUST00000029504:c.A377T:p.N126I 3qF2.3 NA NA chr3 107021109 AGGxTCT T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.666177 0.668523 0.99649 51 2 0 20.89702 0.310345 0.02 -0.254123 20 9 524 244 60 60 0 0 TT 4.503521 15 0 388 0 KEEP - Cym NO MNNG_1 chr3 107102109 107102109 C T exonic Slc16a4 nonsynonymous SNV NM_146136:c.C436T:p.L146F exonic Slc16a4 nonsynonymous SNV uc008qwx.1:c.C436T:p.L146F exonic ENSMUSG00000027896 nonsynonymous SNV ENSMUST00000029502:c.C436T:p.L146F 3qF2.3 NA NA chr3 107102109 GGCxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 44 0 0 8.155368 0.428571 0.02 -0.070152 4 3 111 88 60 60 0 0 CC 8.422864 28 0 797 0 KEEP + Slc16a4 YES MNNG_1 chr3 107733270 107733270 C T exonic Gstm7 synonymous SNV NM_026672:c.G282A:p.R94R exonic Gstm7 synonymous SNV uc008qxt.1:c.G282A:p.R94R exonic ENSMUSG00000004035 synonymous SNV ENSMUST00000133947:c.G405A:p.R135R 3qF2.3 NA NA chr3 107733270 GATxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 236 0 0 65.157536 0.356164 0.02 1.055024 47 26 1381 734 60 60 0 0 CC 34.319375 121 1 3397 19 KEEP - Gstm7 YES MNNG_1 chr3 112952698 112952698 G A intronic Amy2b NA NA intronic Amy2b NA NA ncRNA_intronic ENSMUSG00000083079 NA NA 3qF3 NA NA chr3 112952698 CAAxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 242 0 0 48.905483 0.444444 0.02 -0.420821 25 20 699 528 60 60 0 0 GG 47.82314 159 0 4409 0 KEEP - Amy2b YES MNNG_1 chr3 115415754 115415754 G A exonic S1pr1 synonymous SNV NM_007901:c.C108T:p.N36N exonic S1pr1 synonymous SNV uc008rbo.2:c.C108T:p.N36N exonic ENSMUSG00000045092 synonymous SNV ENSMUST00000055676:c.C108T:p.N36N 3qG1 NA NA chr3 115415754 GATxTTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 122 1 0 36.13318 0.416667 0.02 -0.315658 21 15 593 396 60 60 0 0 GG 20.453848 68 0 1918 0 KEEP - S1pr1 YES MNNG_1 chr3 116488109 116488109 G A exonic Agl nonsynonymous SNV NM_001081326:c.C1292T:p.T431I exonic Agl nonsynonymous SNV uc008rcq.1:c.C1292T:p.T431I exonic ENSMUSG00000033400 nonsynonymous SNV ENSMUST00000162792:c.C1292T:p.T431I 3qG1 NA NA chr3 116488109 AAAxTAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.450221 0.457757 0.983538 44 0 0 22.52976 0.409091 0.02 -0.192882 13 9 346 247 60 60 0 0 GG 6.009645 20 0 537 0 KEEP - Agl YES MNNG_1 chr3 127318160 127318160 G A exonic 4930422G04Rik nonsynonymous SNV NM_197997:c.G4997A:p.R1666K exonic 4930422G04Rik nonsynonymous SNV uc008rhh.2:c.G4997A:p.R1666K exonic ENSMUSG00000051278 nonsynonymous SNV ENSMUST00000043108:c.G4997A:p.R1666K 3qG2 NA NA chr3 127318160 AGAxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 98 0 0 40.109794 0.380952 0.02 -0.368321 26 16 763 446 60 60 0 0 GG 13.23543 44 0 1243 0 KEEP + 4930422G04Rik YES MNNG_1 chr3 131033405 131033405 G A intronic Sgms2 NA NA intronic Sgms2 NA NA intronic ENSMUSG00000050931 NA NA 3qG3 NA NA chr3 131033405 ACAxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162447 0.162467 0.999879 46 1 0 9.923669 0.307692 0.02 -0.114017 9 4 269 115 60 60 0 0 GG 6.61818 22 0 629 0 KEEP - Sgms2 YES MNNG_1 chr3 131282047 131282047 G A exonic Papss1 nonsynonymous SNV NM_011863:c.G1300A:p.D434N exonic Papss1 nonsynonymous SNV uc008rjr.2:c.G1300A:p.D434N exonic ENSMUSG00000028032 nonsynonymous SNV ENSMUST00000029666:c.G1300A:p.D434N 3qG3 NA NA chr3 131282047 CAGxATA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997162 0.997163 0.999999 120 0 0 82.968959 0.449275 0.02 1.072561 38 31 1110 888 60 60 0 0 GG 10.827895 36 0 1008 0 KEEP + Papss1 YES MNNG_1 chr3 134986749 134986749 G A intronic Slc9b2 NA NA intronic Nhedc2 NA NA intronic ENSMUSG00000037994 NA NA 3qG3 NA NA chr3 134986749 TGGxTTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 109 4 0 48.357996 0.542857 0.02 -0.306693 16 19 446 498 60 60 0 0 GG 16.839403 56 0 1518 0 KEEP + Slc9b2 YES MNNG_1 chr3 135390367 135390367 G A intergenic "Nfkb1(dist=35856),Slc39a8(dist=98088)" NA NA intergenic "Nfkb1(dist=35856),Slc39a8(dist=98088)" NA NA exonic ENSMUSG00000045520 synonymous SNV ENSMUST00000062127:c.G24A:p.E8E 3qG3 NA NA chr3 135390367 AGAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 57 2 0 24.315472 0.45 0.02 -0.175404 11 9 325 260 60 60 0 0 GG 8.121996 27 0 765 0 KEEP NA Nfkb1 YES MNNG_1 chr3 138017105 138017105 G A intergenic "Adh6a(dist=23007),Adh6-ps1(dist=19980)" NA NA intronic Adh6b NA NA intronic ENSMUSG00000074206 NA NA 3qG3 NA NA chr3 138017105 GTAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 132 1 0 41.565615 0.410256 0.02 -0.350795 23 16 672 454 60 60 0 0 GG 20.453526 68 0 1913 0 KEEP + Adh6a YES MNNG_1 chr3 141520544 141520544 G A exonic Bmpr1b nonsynonymous SNV NM_001277218:c.C602T:p.A201V exonic Bmpr1b nonsynonymous SNV uc008rog.1:c.C602T:p.A201V exonic ENSMUSG00000052430 nonsynonymous SNV ENSMUST00000029948:c.C602T:p.A201V 3qH1 NA NA chr3 141520544 TTAxCTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 188 4 0 61.341775 0.396825 0.02 1.134023 38 25 1101 678 60 60 0 0 GG 26.770721 89 0 2496 0 KEEP - Bmpr1b YES MNNG_1 chr3 151408919 151408919 G A exonic Ifi44 synonymous SNV NM_133871:c.C513T:p.D171D exonic Ifi44 synonymous SNV uc008rsk.2:c.C513T:p.D171D exonic ENSMUSG00000028037 synonymous SNV ENSMUST00000029671:c.C513T:p.D171D 3qH3 NA NA chr3 151408919 GTAxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119602 0.120436 0.993072 25 0 0 16.169012 0.545455 0.02 -0.096462 5 6 144 166 60 60 0 0 GG 3.30749 11 0 297 0 KEEP - Ifi44 YES MNNG_1 chr3 152644974 152644974 G A exonic St6galnac5 nonsynonymous SNV NM_012028:c.C8T:p.T3I exonic St6galnac5 nonsynonymous SNV uc008rtu.1:c.C8T:p.T3I exonic ENSMUSG00000039037 nonsynonymous SNV ENSMUST00000044278:c.C8T:p.T3I 3qH3 NA NA chr3 152644974 AGGxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 174 0 0 55.65486 0.431373 0.02 1.248189 29 22 821 603 60 60 0 0 GG 27.670784 92 0 2540 0 KEEP - St6galnac5 YES MNNG_1 chr3 19868122 19868122 G A exonic Cp stopgain SNV NM_001276248:c.G687A:p.W229X exonic Cp stopgain SNV uc012cnu.1:c.G336A:p.W112X exonic ENSMUSG00000003617 stopgain SNV ENSMUST00000003714:c.G687A:p.W229X 3qA2 NA NA chr3 19868122 CTGxTAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 70 0 0 28.820892 0.666667 0.02 -0.131544 5 10 145 282 60 60 0 0 GG 13.473628 45 0 1234 0 KEEP + Cp YES MNNG_1 chr3 35873179 35873179 G A exonic Mccc1 nonsynonymous SNV NM_023644:c.C1399T:p.L467F exonic Mccc1 nonsynonymous SNV uc008oyz.1:c.C1201T:p.L401F exonic ENSMUSG00000027709 nonsynonymous SNV ENSMUST00000029259:c.C1399T:p.L467F 3qB NA NA chr3 35873179 GGAxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78095 0.78106 0.99986 69 2 0 29.356767 0.382353 0.02 -0.29778 21 13 599 330 60 60 0 0 GG 5.714494 19 0 526 0 KEEP - Mccc1 YES MNNG_1 chr3 36789785 36789785 G A exonic 4932438A13Rik nonsynonymous SNV NM_172679:c.G970A:p.D324N exonic "4932438A13Rik,Kiaa1109" nonsynonymous SNV uc008paa.1:c.G970A:p.D324N exonic ENSMUSG00000037270 nonsynonymous SNV ENSMUST00000152564:c.G970A:p.D324N 3qB NA NA chr3 36789785 CAAxACT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099505 0.099721 0.997832 26 0 0 13.474101 0.5 0.02 -0.087694 5 5 144 141 60 60 0 0 GG 4.813409 16 0 461 0 KEEP + 4932438A13Rik YES MNNG_1 chr3 37218838 37218838 C G exonic Bbs12 nonsynonymous SNV NM_001008502:c.C857G:p.A286G exonic Bbs12 nonsynonymous SNV uc008pan.1:c.C512G:p.A171G exonic ENSMUSG00000051444 nonsynonymous SNV ENSMUST00000057975:c.C857G:p.A286G 3qB NA NA chr3 37218838 TGGxCAA C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 117 1 0 49.9448 0.358491 0.02 1.427353 34 19 991 559 60 60 0 0 CC 15.037145 50 0 1380 0 KEEP + Bbs12 NO MNNG_1 chr3 37319300 37319300 G A exonic Spata5 nonsynonymous SNV NM_001163511:c.G38A:p.G13D exonic Spata5 nonsynonymous SNV uc008pau.2:c.G38A:p.G13D exonic ENSMUSG00000027722 nonsynonymous SNV ENSMUST00000029277:c.G38A:p.G13D 3qB NA NA chr3 37319300 AGGxCGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 160 0 0 75.57064 0.402597 0.02 1.012627 46 31 1313 834 60 60 0 0 GG 15.337661 51 0 1393 0 KEEP + Spata5 YES MNNG_1 chr3 38353917 38353917 G A intronic Ankrd50 NA NA exonic Ankrd50 synonymous SNV uc008pbc.2:c.C777T:p.S259S exonic ENSMUSG00000044864 synonymous SNV ENSMUST00000094300:c.C453T:p.S151S 3qB NA NA chr3 38353917 AGGxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 126 1 0 64.202144 0.409836 0.02 1.250156 36 25 1039 702 60 60 0 0 GG 15.294602 51 0 1405 0 KEEP - Ankrd50 YES MNNG_1 chr3 46854757 46854757 G A intergenic "Pabpc4l(dist=602894),Gm7977(dist=975177)" NA NA intergenic "Pabpc4l(dist=602894),DQ556350(dist=1223969)" NA NA ncRNA_exonic ENSMUSG00000072387 NA NA 3qC "Score=0.992346;Name=No.83477,chr7:138533880" NA chr3 46854757 TTGxTTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 278 0 27 75.801815 0.430556 0.02 1.055526 41 31 1179 824 60 60 0 0 GG 46.900336 156 0 4306 0 KEEP NA Pabpc4l YES MNNG_1 chr3 51276665 51276665 G A exonic Naa15 synonymous SNV NM_053089:c.G2541A:p.K847K exonic Naa15 synonymous SNV uc008pdz.2:c.G2541A:p.K847K exonic ENSMUSG00000063273 synonymous SNV ENSMUST00000029303:c.G2541A:p.K847K 3qC NA NA chr3 51276665 GAAxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 67 0 0 9.163118 0.210526 0.02 -0.166631 15 4 441 115 60 60 0 0 GG 10.227165 34 0 967 0 KEEP + Naa15 YES MNNG_1 chr3 53205809 53205809 G C intergenic "Lhfp(dist=140208),Nhlrc3(dist=50109)" NA NA intergenic "Lhfp(dist=140208),Nhlrc3(dist=50109)" NA NA intergenic "ENSMUSG00000048332(dist=140208),ENSMUSG00000042997(dist=46701)" NA NA 3qC NA NA chr3 53205809 GTAxCTT G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 132 1 12 47.915784 0.391304 0.02 -0.412181 28 18 805 527 60 60 0 0 GG 18.650676 62 0 1766 0 KEEP NA Lhfp NO MNNG_1 chr3 58495277 58495277 G A intronic Siah2 NA NA intronic Siah2 NA NA intronic ENSMUSG00000036432 NA NA 3qD NA NA chr3 58495277 CTGxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 121 2 0 54.561731 0.396226 0.02 1.221642 32 21 941 600 60 60 0 0 GG 15.942926 53 0 1499 0 KEEP - Siah2 YES MNNG_1 chr3 58983880 58983880 G A exonic Gpr87 nonsynonymous SNV NM_032399:c.C128T:p.T43I exonic Gpr87 nonsynonymous SNV uc012cpy.1:c.C128T:p.T43I exonic ENSMUSG00000051431 nonsynonymous SNV ENSMUST00000056898:c.C128T:p.T43I 3qD NA NA chr3 58983880 ATGxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 100 0 0 38.620691 0.441176 0.02 -0.298157 19 15 546 416 60 60 0 0 GG 15.639068 52 0 1442 0 KEEP + Gpr87 YES MNNG_1 chr3 79209672 79209672 C T exonic Gm17359 nonsynonymous SNV NM_001142953:c.C130T:p.P44S exonic LOC100233207 nonsynonymous SNV uc012cqo.1:c.C130T:p.P44S exonic ENSMUSG00000091685 nonsynonymous SNV ENSMUST00000164216:c.C130T:p.P44S 3qE3 NA NA chr3 79209672 CGTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 85 0 0 23.017051 0.391304 0.02 -0.201378 14 9 387 254 60 60 0 0 CC 15.041185 50 0 1427 0 KEEP + Gm17359 YES MNNG_1 chr3 80605706 80605706 C T exonic Gria2 synonymous SNV NM_001039195:c.G90A:p.G30G exonic Gria2 synonymous SNV uc008poa.1:c.G90A:p.G30G exonic ENSMUSG00000033981 synonymous SNV ENSMUST00000075316:c.G90A:p.G30G 3qE3 NA NA chr3 80605706 CCCxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 104 0 0 29.658236 0.458333 0.02 -0.210473 13 11 379 316 60 60 0 0 CC 19.550338 65 0 1799 0 KEEP - Gria2 YES MNNG_1 chr3 83570954 83570954 C T exonic Sfrp2 nonsynonymous SNV NM_009144:c.C491T:p.A164V exonic Sfrp2 nonsynonymous SNV uc008ppl.2:c.C491T:p.A164V exonic ENSMUSG00000027996 nonsynonymous SNV ENSMUST00000029625:c.C491T:p.A164V 3qE3 NA NA chr3 83570954 CGGxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 121 4 0 37.940041 0.280702 0.02 1.195334 41 16 1213 450 60 60 0 0 CC 12.934546 43 0 1210 0 KEEP + Sfrp2 YES MNNG_1 chr3 85469856 85469856 C T exonic Fam160a1 nonsynonymous SNV NM_172682:c.G2707A:p.E903K exonic Fam160a1 nonsynonymous SNV uc008pqu.2:c.G1129A:p.E377K exonic ENSMUSG00000051000 nonsynonymous SNV ENSMUST00000119077:c.G1459A:p.E487K 3qF1 NA NA chr3 85469856 TCTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.799738 0.800245 0.999366 63 0 0 33.173281 0.371429 0.02 -0.306958 22 13 651 370 60 60 0 0 CC 5.110304 17 0 469 0 KEEP - Fam160a1 YES MNNG_1 chr3 87556577 87556577 C T intronic Pear1 NA NA UTR5 Megf12 NA NA intronic ENSMUSG00000028073 NA NA 3qF1 NA NA chr3 87556577 CATxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992082 0.992094 0.999988 98 0 0 67.655375 0.412698 0.02 1.142719 37 26 1086 738 60 60 0 0 CC 8.117892 27 0 759 0 KEEP - Pear1 YES MNNG_1 chr3 87780981 87780981 C T exonic Nes nonsynonymous SNV NM_016701:c.C2624T:p.P875L exonic Nes nonsynonymous SNV uc008ptn.1:c.C2624T:p.P875L exonic ENSMUSG00000004891 nonsynonymous SNV ENSMUST00000090973:c.C2624T:p.P875L 3qF1 NA NA chr3 87780981 AACxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 55 0 0 12.367407 0.277778 0.02 -0.157863 13 5 376 146 60 60 0 0 CC 9.325422 31 0 883 0 KEEP + Nes YES MNNG_1 chr3 87792244 87792244 C T exonic Bcan nonsynonymous SNV NM_007529:c.G2506A:p.E836K exonic Bcan nonsynonymous SNV uc008pto.2:c.G2506A:p.E836K exonic ENSMUSG00000004892 nonsynonymous SNV ENSMUST00000090971:c.G2506A:p.E836K 3qF1 NA NA chr3 87792244 TCTxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 178 1 0 84.988073 0.373626 0.02 0.897324 57 34 1699 949 60 60 0 0 CC 16.498276 55 0 1528 0 KEEP - Bcan YES MNNG_1 chr3 88826978 88826978 C T exonic Ash1l nonsynonymous SNV NM_138679:c.C5839T:p.P1947S exonic Ash1l nonsynonymous SNV uc008pxj.1:c.C5839T:p.P1947S exonic ENSMUSG00000028053 nonsynonymous SNV ENSMUST00000090933:c.C5839T:p.P1947S 3qF1 NA NA chr3 88826978 ATTxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 122 4 0 16.143996 0.21875 0.02 -0.289218 25 7 711 201 60 60 0 0 CC 18.350708 61 0 1749 0 KEEP + Ash1l YES MNNG_1 chr3 88892766 88892766 G A exonic Rusc1 nonsynonymous SNV NM_001083808:c.C410T:p.T137I exonic Rusc1 nonsynonymous SNV uc008pxk.1:c.C92T:p.T31I exonic ENSMUSG00000041263 nonsynonymous SNV ENSMUST00000166687:c.C410T:p.T137I 3qF1 NA NA chr3 88892766 TTGxTGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 251 3 1 229.3046 0.565789 0.02 3.74412 66 86 1889 2335 60 60 0 0 GG 21.307071 71 0 1919 0 KEEP - Rusc1 YES MNNG_1 chr3 88954328 88954328 C T exonic Hcn3 synonymous SNV NM_008227:c.G1182A:p.K394K exonic Hcn3 synonymous SNV uc008pxr.1:c.G1182A:p.K394K exonic ENSMUSG00000028051 synonymous SNV ENSMUST00000029686:c.G1182A:p.K394K 3qF1 NA NA chr3 88954328 CATxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 129 1 0 87.163021 0.478873 0.02 1.072722 37 34 1073 923 60 60 0 0 CC 15.622111 52 0 1420 0 KEEP - Hcn3 YES MNNG_1 chr3 89752279 89752279 G A intronic Atp8b2 NA NA intronic Atp8b2 NA NA intronic ENSMUSG00000060671 NA NA 3qF1 NA NA chr3 89752279 TGGxCCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 108 0 0 57.547161 0.488889 0.02 -0.3946 23 22 664 606 60 60 0 0 GG 15.595898 52 0 1387 0 KEEP - Atp8b2 YES MNNG_1 chr3 90002045 90002045 C T exonic Nup210l nonsynonymous SNV NM_029937:c.C4577T:p.A1526V exonic Nup210l nonsynonymous SNV uc012css.1:c.C4577T:p.A1526V exonic ENSMUSG00000027939 nonsynonymous SNV ENSMUST00000029548:c.C4577T:p.A1526V 3qF1 NA NA chr3 90002045 TGGxTAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 61 2 0 18.447619 0.363636 0.02 -0.192845 14 8 411 209 60 60 0 0 CC 8.72238 29 0 812 0 KEEP + Nup210l YES MNNG_1 chr3 90080321 90080321 C T intronic Dennd4b NA NA intronic Dennd4b NA NA intronic ENSMUSG00000042404 NA NA 3qF1 NA NA chr3 90080321 TACxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 10 0 112.204806 0.343284 0.02 2.403378 88 46 2573 1277 60 60 0 0 CC 32.730733 109 0 3016 0 KEEP + Dennd4b YES MNNG_1 chr3 90156002 90156002 C T exonic Gatad2b synonymous SNV NM_139304:c.C1170T:p.I390I exonic Gatad2b synonymous SNV uc008qcb.1:c.C1170T:p.I390I exonic ENSMUSG00000042390 synonymous SNV ENSMUST00000049382:c.C1170T:p.I390I 3qF1 NA NA chr3 90156002 TATxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 146 0 0 59.101862 0.410714 0.02 1.195389 33 23 957 646 60 60 0 0 CC 18.944175 63 0 1783 0 KEEP + Gatad2b YES MNNG_1 chr3 90319838 90319838 G A exonic S100a13 synonymous SNV NM_009113:c.G213A:p.L71L exonic S100a13 synonymous SNV uc008qcu.1:c.G27A:p.L9L exonic ENSMUSG00000042312 synonymous SNV ENSMUST00000107338:c.G27A:p.L9L 3qF1 NA NA chr3 90319838 ACTxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 241 3 0 153.056828 0.522936 0.02 2.597171 52 57 1496 1586 60 60 0 0 GG 27.675667 92 0 2622 0 KEEP + S100a13 YES MNNG_1 chr3 90346295 90346295 G A exonic S100a16 synonymous SNV NM_026416:c.G162A:p.G54G exonic S100a16 synonymous SNV uc008qcw.1:c.G162A:p.G54G exonic ENSMUSG00000074457 synonymous SNV ENSMUST00000098910:c.G162A:p.G54G 3qF1 NA NA chr3 90346295 AGGxAAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 176 2 0 119.930854 0.589041 0.02 1.046321 30 43 866 1209 60 60 0 0 GG 21.656977 72 0 2032 0 KEEP + S100a16 YES MNNG_1 chr3 92169996 92169996 C T exonic Sprr2f nonsynonymous SNV NM_011472:c.C179T:p.P60L exonic Sprr2f nonsynonymous SNV uc008qdu.1:c.C179T:p.P60L exonic ENSMUSG00000050635 synonymous SNV ENSMUST00000050397:c.C208T:p.L70L 3qF1 NA NA chr3 92169996 CTCxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 650 10 0 232.184039 0.40625 0.02 5.192234 133 91 3912 2545 60 60 0 0 CC 96.525595 321 0 9110 0 KEEP + Sprr2f YES MNNG_1 chr3 92877938 92877938 G A exonic Gm4858 nonsynonymous SNV NM_001177694:c.G496A:p.A166T exonic Gm4858 nonsynonymous SNV uc012cth.1:c.G496A:p.A166T exonic ENSMUSG00000074432 nonsynonymous SNV ENSMUST00000098885:c.G118A:p.A40T 3qF1 "Score=0.940601;Name=No.81782,chr3:93412879" NA chr3 92877938 CCTxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 145 13 18 80.249024 0.525424 0.02 1.079987 28 31 823 832 60 60 0 0 GG 21.336432 71 0 1972 0 KEEP + Gm4858 YES MNNG_1 chr3 94837360 94837360 G A intronic Psmd4 NA NA exonic Psmd4 nonsynonymous SNV uc008qht.1:c.C1013T:p.S338F exonic ENSMUSG00000005625 nonsynonymous SNV ENSMUST00000117355:c.C1013T:p.S338F 3qF2.1 NA NA chr3 94837360 GGGxATG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986047 0.986153 0.999892 85 1 0 105.597923 0.649123 0.02 1.177842 20 37 580 1040 60 60 0 0 GG 6.918742 23 0 653 0 KEEP - Psmd4 YES MNNG_1 chr3 94944136 94944136 C T exonic Tnfaip8l2 nonsynonymous SNV NM_027206:c.G337A:p.A113T exonic Tnfaip8l2 nonsynonymous SNV uc008qif.1:c.G337A:p.A113T exonic ENSMUSG00000013707 nonsynonymous SNV ENSMUST00000013851:c.G337A:p.A113T 3qF2.1 NA NA chr3 94944136 CAGxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 188 0 0 116.674038 0.418182 0.02 2.426355 64 46 1827 1272 60 60 0 0 CC 16.520256 55 0 1500 0 KEEP - Tnfaip8l2 YES MNNG_1 chr3 95554217 95554217 C T intronic Tars2 NA NA UTR5 Tars2 NA NA intronic ENSMUSG00000028107 NA NA 3qF2.1 NA NA chr3 95554217 CTCxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 181 1 0 90.020291 0.402299 0.02 1.030689 52 35 1515 988 60 60 0 0 CC 20.154999 67 0 1908 0 KEEP - Tars2 YES MNNG_1 chr3 95733564 95733564 C T exonic Anp32e synonymous SNV NM_001253757:c.C45T:p.A15A exonic Anp32e synonymous SNV uc008qlu.2:c.C45T:p.A15A exonic ENSMUSG00000015749 synonymous SNV ENSMUST00000015893:c.C45T:p.A15A 3qF2.1 NA NA chr3 95733564 AGCxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 98 0 0 25.041004 0.3125 0.02 -0.289372 22 10 626 289 60 60 0 0 CC 10.868803 41 1 1125 13 KEEP + Anp32e YES MNNG_1 chr3 96091018 96091018 C T exonic Fcgr1 nonsynonymous SNV NM_010186:c.G475A:p.D159N exonic Fcgr1 nonsynonymous SNV uc008qmr.1:c.G475A:p.D159N exonic ENSMUSG00000015947 nonsynonymous SNV ENSMUST00000029748:c.G475A:p.D159N 3qF2.1 NA NA chr3 96091018 AATxTGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229143 0.229173 0.999869 40 0 0 12.538947 0.333333 0.02 -0.131553 10 5 293 143 60 60 0 0 CC 6.317597 21 0 605 0 KEEP - Fcgr1 YES MNNG_1 chr3 96589857 96589857 C T exonic Rnf115 synonymous SNV NM_026406:c.C580T:p.L194L exonic Rnf115 synonymous SNV uc008qoe.2:c.C580T:p.L194L exonic ENSMUSG00000028098 synonymous SNV ENSMUST00000029740:c.C580T:p.L194L 3qF2.1 NA NA chr3 96589857 CTTxTAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291966 0.292001 0.999879 44 0 0 6.392549 0.176471 0.02 -0.149095 14 3 414 84 60 60 0 0 CC 6.618246 22 0 630 0 KEEP + Rnf115 YES MNNG_1 chr3 96589921 96589921 C A exonic Rnf115 nonsynonymous SNV NM_026406:c.C644A:p.T215K exonic Rnf115 nonsynonymous SNV uc008qoe.2:c.C644A:p.T215K exonic ENSMUSG00000028098 nonsynonymous SNV ENSMUST00000029740:c.C644A:p.T215K 3qF2.1 NA NA chr3 96589921 CAAxAGT C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 46 0 0 6.773247 0.214286 0.02 -0.12278 11 3 320 85 60 60 0 0 CC 6.918673 23 0 652 0 KEEP + Rnf115 NO MNNG_1 chr3 97009561 97009561 C T exonic Bcl9 nonsynonymous SNV NM_029933:c.G3500A:p.G1167E exonic Bcl9 nonsynonymous SNV uc008qos.1:c.G3500A:p.G1167E exonic ENSMUSG00000038256 nonsynonymous SNV ENSMUST00000166341:c.G3500A:p.G1167E 3qF2.1 NA NA chr3 97009561 ATCxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99949 0.999559 0.999931 127 1 0 104.679054 0.46988 0.02 1.06564 44 39 1287 1110 60 60 0 0 CC 7.519826 25 0 698 0 KEEP - Bcl9 YES MNNG_1 chr3 97017584 97017584 C T intronic Bcl9 NA NA intronic Bcl9 NA NA intronic ENSMUSG00000038256 NA NA 3qF2.1 NA NA chr3 97017584 CAAxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.487421 0.490544 0.993634 37 0 0 25.431309 0.434783 0.02 -0.201667 13 10 351 275 60 60 0 0 CC 3.608889 12 0 325 0 KEEP - Bcl9 YES MNNG_1 chr3 97851722 97851722 G A exonic Notch2 nonsynonymous SNV NM_010928:c.G145A:p.G49S exonic Notch2 nonsynonymous SNV uc008qpn.1:c.G145A:p.G49S exonic ENSMUSG00000027878 nonsynonymous SNV ENSMUST00000079812:c.G145A:p.G49S 3qF2.2 NA NA chr3 97851722 ACAxGCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 77 0 0 47.602698 0.53125 0.02 -0.280611 15 17 419 491 60 60 0 0 GG 9.024838 30 0 859 0 KEEP + Notch2 YES MNNG_1 chr3 98106618 98106618 C T exonic Hmgcs2 synonymous SNV NM_008256:c.C1368T:p.S456S exonic Hmgcs2 synonymous SNV uc008qpr.2:c.C1368T:p.S456S exonic ENSMUSG00000027875 synonymous SNV ENSMUST00000090746:c.C1368T:p.S456S 3qF2.2 NA NA chr3 98106618 GTCxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 41 0 0 21.310558 0.470588 0.02 -0.157852 9 8 259 226 60 60 0 0 CC 5.380168 18 0 488 0 KEEP + Hmgcs2 YES MNNG_1 chr3 99156371 99156371 C T exonic Tbx15 nonsynonymous SNV NM_009323:c.C1634T:p.S545F exonic Tbx15 nonsynonymous SNV uc008qql.1:c.C1634T:p.S545F exonic ENSMUSG00000027868 nonsynonymous SNV ENSMUST00000029462:c.C1634T:p.S545F 3qF2.2 NA NA chr3 99156371 GTTxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 193 1 0 77.170653 0.378049 0.02 0.976138 51 31 1489 860 60 60 0 0 CC 23.464685 78 0 2239 0 KEEP + Tbx15 YES MNNG_1 chr3 99875943 99875943 C T exonic Spag17 nonsynonymous SNV NM_028892:c.C4196T:p.P1399L exonic Spag17 nonsynonymous SNV uc012cus.1:c.C4196T:p.P1399L exonic ENSMUSG00000027867 nonsynonymous SNV ENSMUST00000029461:c.C3761T:p.P1254L 3qF2.2 NA NA chr3 99875943 TACxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 83 0 0 32.219473 0.428571 0.02 -0.245566 16 12 467 348 60 60 0 0 CC 12.323918 41 0 1146 0 KEEP + Spag17 YES MNNG_1 chr4 100187289 100187289 G T exonic Ube2u nonsynonymous SNV NM_001033773:c.G464T:p.R155I exonic Ube2u nonsynonymous SNV uc008tve.1:c.G125T:p.R42I exonic ENSMUSG00000069733 nonsynonymous SNV ENSMUST00000092730:c.G125T:p.R42I 4qC6 NA NA chr4 100187289 AAAxAGA G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 91 0 0 8.681328 0.235294 0.02 -0.157859 13 4 382 108 60 60 0 0 GG 16.244677 54 0 1557 0 KEEP + Ube2u NO MNNG_1 chr4 106082773 106082773 G A exonic Usp24 nonsynonymous SNV NM_183225:c.G5743A:p.A1915T exonic Usp24 nonsynonymous SNV uc008tyh.2:c.G5743A:p.A1915T exonic ENSMUSG00000028514 nonsynonymous SNV ENSMUST00000094933:c.G5743A:p.A1915T 4qC7 NA NA chr4 106082773 GTTxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 75 2 0 20.397774 0.5 0.02 -0.149054 8 8 229 214 60 60 0 0 GG 15.040869 50 0 1429 0 KEEP + Usp24 YES MNNG_1 chr4 106246410 106246410 G A exonic Dhcr24 synonymous SNV NM_053272:c.G690A:p.R230R exonic Dhcr24 synonymous SNV uc008tyl.1:c.G690A:p.R230R exonic ENSMUSG00000034926 synonymous SNV ENSMUST00000047973:c.G690A:p.R230R 4qC7 NA NA chr4 106246410 CCGxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 166 0 0 122.144868 0.571429 0.02 1.002496 33 44 945 1240 60 60 0 0 GG 20.147677 67 0 1892 0 KEEP + Dhcr24 YES MNNG_1 chr4 106890332 106890332 G A intronic Ldlrad1 NA NA intronic Ldlrad1 NA NA intronic ENSMUSG00000070877 NA NA 4qC7 NA NA chr4 106890332 AGGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 74 0 0 54.532837 0.625 0.02 -0.289323 12 20 348 542 60 60 0 0 GG 9.324656 31 0 868 0 KEEP + Ldlrad1 YES MNNG_1 chr4 108175621 108175621 G T exonic Zcchc11 nonsynonymous SNV NM_175472:c.G1429T:p.V477L exonic Zcchc11 nonsynonymous SNV uc008ubd.1:c.G1429T:p.V477L exonic ENSMUSG00000034610 nonsynonymous SNV ENSMUST00000155068:c.G1312T:p.V438L 4qC7 NA NA chr4 108175621 GTGxTGT G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 57 3 0 12.692078 0.555556 0.02 -0.087616 4 5 109 130 60 60 0 0 GG 11.721792 39 0 1046 0 KEEP + Zcchc11 NO MNNG_1 chr4 108534039 108534039 G A exonic Txndc12 synonymous SNV NM_025334:c.G501A:p.Q167Q exonic Txndc12 synonymous SNV uc008ubs.1:c.G501A:p.Q167Q exonic ENSMUSG00000028567 synonymous SNV ENSMUST00000030296:c.G501A:p.Q167Q 4qC7 NA NA chr4 108534039 TCAxGAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 122 2 0 70.72438 0.581395 0.02 -0.394226 18 25 529 715 60 60 0 0 GG 15.730703 55 1 1560 7 KEEP + Txndc12 YES MNNG_1 chr4 108729081 108729081 G A intronic Nrd1 NA NA intronic Nrd1 NA NA intronic ENSMUSG00000053510 NA NA 4qC7 NA NA chr4 108729081 CAAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78105 0.78106 0.999988 69 0 0 44.12571 0.5 0.02 -0.297586 17 17 490 463 60 60 0 0 GG 8.122295 27 0 772 0 KEEP + Nrd1 YES MNNG_1 chr4 111609479 111609479 C T exonic Skint8 nonsynonymous SNV NM_001100466:c.C460T:p.P154S exonic Skint8 nonsynonymous SNV uc008udl.1:c.C460T:p.P154S exonic ENSMUSG00000078599 nonsynonymous SNV ENSMUST00000106572:c.C460T:p.P154S 4qD1 NA NA chr4 111609479 GCCxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 50 1 0 21.914305 0.5 0.02 -0.139997 8 8 215 229 60 60 0 0 CC 8.990316 30 0 836 0 KEEP + Skint8 YES MNNG_1 chr4 114796983 114796983 C T exonic Cyp4x1 nonsynonymous SNV NM_001003947:c.G455A:p.C152Y exonic Cyp4x1 nonsynonymous SNV uc008uep.1:c.G455A:p.C152Y exonic ENSMUSG00000047155 nonsynonymous SNV ENSMUST00000051400:c.G455A:p.C152Y 4qD1 NA NA chr4 114796983 ACAxATG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.607319 0.612407 0.991692 56 2 0 37.383284 0.555556 0.02 -0.236644 12 15 342 383 60 60 0 0 CC 7.509486 25 0 667 0 KEEP - Cyp4x1 YES MNNG_1 chr4 116837739 116837739 C T intronic Kif2c NA NA intronic Kif2c NA NA intronic ENSMUSG00000028678 NA NA 4qD1 NA NA chr4 116837739 CCCxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 244 4 0 112.20645 0.417476 0.02 2.66677 60 43 1699 1221 60 60 0 0 CC 30.347734 101 0 2765 0 KEEP - Kif2c YES MNNG_1 chr4 118070671 118070671 C T intronic Szt2 NA NA intronic Szt2 NA NA intronic ENSMUSG00000033253 NA NA 4qD2.1 NA NA chr4 118070671 TACxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 95 0 0 30.232221 0.478261 0.02 -0.201712 12 11 347 319 60 60 0 0 CC 17.746537 59 0 1647 0 KEEP - Szt2 YES MNNG_1 chr4 118541650 118541650 C A exonic Olfr1331 nonsynonymous SNV NM_001011856:c.C263A:p.A88D exonic Olfr1331 nonsynonymous SNV uc008uky.1:c.C263A:p.A88D exonic ENSMUSG00000073769 nonsynonymous SNV ENSMUST00000094831:c.C263A:p.A88D 4qD2.1 "Score=0.901677;Name=No.86368,chr4:118500232" NA chr4 118541650 TTGxTCA C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 343 3 0 9.501011 0.059406 0.02 2.504729 95 6 2764 165 60 60 0 0 CC 59.771235 203 1 5653 11 KEEP + Olfr1331 NO MNNG_1 chr4 119297476 119297476 C T intronic Foxj3 NA NA intronic Foxj3 NA NA intronic ENSMUSG00000032998 NA NA 4qD2.1 NA NA chr4 119297476 TTTxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 157 4 0 72.220693 0.541667 0.02 -0.429732 22 26 651 742 60 60 0 0 CC 25.649083 88 1 2488 7 KEEP + Foxj3 YES MNNG_1 chr4 12073042 12073042 G A exonic Rbm12b1 synonymous SNV NM_028226:c.G1866A:p.E622E exonic Rbm12b synonymous SNV uc008sao.2:c.G1866A:p.E622E exonic ENSMUSG00000046667 synonymous SNV ENSMUST00000069128:c.G1866A:p.E622E 4qA1 "Score=0.957623;Name=No.85754,chr4:12016513" NA chr4 12073042 GGAxCAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 107 0 0 27.950252 0.342857 0.02 -0.306904 23 12 669 320 60 60 0 0 GG 19.25077 64 0 1807 0 KEEP + Rbm12b1 YES MNNG_1 chr4 121668888 121668888 T G intergenic "Gm12887(dist=374158),9530002B09Rik(dist=697614)" NA NA intergenic "Gm12887(dist=374158),9530002B09Rik(dist=697614)" NA NA intergenic "ENSMUSG00000083867(dist=77936),ENSMUSG00000083679(dist=87280)" NA NA 4qD2.2 NA NA chr4 121668888 GTCxTGC T G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12042 0.120436 0.999869 35 1 0 7.433212 0.272727 0.02 -0.096434 8 3 216 88 60 60 0 0 TT 6.315502 21 0 573 0 KEEP NA Gm12887 NO MNNG_1 chr4 125742154 125742154 C T intronic Oscp1 NA NA intronic Oscp1 NA NA intronic ENSMUSG00000042616 NA NA 4qD2.2 NA NA chr4 125742154 TTGxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 67 2 1 27.168279 0.625 0.02 -0.140294 6 10 175 270 60 60 0 1 CC 11.429742 38 0 1057 0 KEEP + Oscp1 YES MNNG_1 chr4 128874147 128874147 C T exonic Yars nonsynonymous SNV NM_134151:c.C239T:p.T80I exonic Yars nonsynonymous SNV uc008uwk.2:c.C131T:p.T44I exonic ENSMUSG00000028811 nonsynonymous SNV ENSMUST00000001365:c.C131T:p.T44I 4qD2.2 NA NA chr4 128874147 CCAxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 101 0 0 37.304612 0.405405 0.02 -0.333191 22 15 620 410 60 60 0 0 CC 12.631762 42 0 1150 0 KEEP + Yars YES MNNG_1 chr4 129696033 129696033 C T exonic Bai2 nonsynonymous SNV NM_001199696:c.C3706T:p.P1236S exonic Bai2 nonsynonymous SNV uc008uyq.1:c.C2056T:p.P686S exonic ENSMUSG00000028782 nonsynonymous SNV ENSMUST00000106018:c.C3607T:p.P1203S 4qD2.2 NA NA chr4 129696033 TCAxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 222 1 0 204.249936 0.596774 0.02 2.285734 50 74 1439 2053 60 60 0 0 CC 27.904875 93 0 2546 0 KEEP + Bai2 YES MNNG_1 chr4 132617419 132617419 C T exonic Ahdc1 nonsynonymous SNV NM_146155:c.C55T:p.P19S exonic Ahdc1 nonsynonymous SNV uc008vcc.1:c.C55T:p.P19S exonic ENSMUSG00000037692 nonsynonymous SNV ENSMUST00000044521:c.C55T:p.P19S 4qD2.3 NA NA chr4 132617419 TCTxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 48 2 0 32.20839 0.521739 0.02 -0.201668 11 12 317 334 60 60 0 0 CC 6.016513 20 0 571 0 KEEP + Ahdc1 YES MNNG_1 chr4 132617630 132617630 C T exonic Ahdc1 nonsynonymous SNV NM_146155:c.C266T:p.A89V exonic Ahdc1 nonsynonymous SNV uc008vcc.1:c.C266T:p.A89V exonic ENSMUSG00000037692 nonsynonymous SNV ENSMUST00000044521:c.C266T:p.A89V 4qD2.3 NA NA chr4 132617630 CAGxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.712749 0.717315 0.993634 50 0 0 42.604114 0.516129 0.02 -0.271846 15 16 431 443 60 60 0 0 CC 3.609108 12 0 329 0 KEEP + Ahdc1 YES MNNG_1 chr4 135474029 135474029 C T UTR3 Cnr2 NA NA UTR3 Cnr2 NA NA UTR3 ENSMUSG00000062585 NA NA 4qD3 NA NA chr4 135474029 AGAxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 161 0 0 67.188715 0.520833 0.02 -0.420933 23 25 667 697 60 60 0 0 CC 27.65995 92 0 2550 0 KEEP + Cnr2 YES MNNG_1 chr4 136957543 136957543 C T exonic Gm13011 synonymous SNV NM_001126318:c.G852A:p.X284X exonic Gm13011 synonymous SNV uc012dnj.1:c.G852A:p.X284X exonic ENSMUSG00000078520 synonymous SNV ENSMUST00000024200:c.G852A:p.X284X 4qD3 "Score=0.933294;Name=No.86416,chr4:136975780" NA chr4 136957543 GATxTAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 93 0 0 36.159636 0.565217 0.02 -0.20171 10 13 298 368 60 60 0 0 CC 14.731245 49 0 1390 0 KEEP - Gm13011 YES MNNG_1 chr4 137206184 137206184 C T intronic Usp48 NA NA intronic Usp48 NA NA intronic ENSMUSG00000043411 NA NA 4qD3 NA NA chr4 137206184 AGAxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 47 0 0 10.298806 0.5 0.02 -0.078915 4 4 112 108 60 60 0 0 CC 8.720554 29 0 788 0 KEEP + Usp48 YES MNNG_1 chr4 138524251 138524251 G A UTR3 Rnf186 NA NA UTR3 Rnf186 NA NA UTR3 ENSMUSG00000070661 NA NA 4qD3 NA NA chr4 138524251 AAAxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 124 0 0 25.352088 0.526316 0.02 -0.166547 9 10 263 263 60 60 0 0 GG 26.740285 89 0 2476 0 KEEP + Rnf186 YES MNNG_1 chr4 138956249 138956249 C T exonic Ubr4 synonymous SNV NM_001160319:c.C1642T:p.L548L exonic Ubr4 synonymous SNV uc008vmm.2:c.C1642T:p.L548L exonic ENSMUSG00000066036 synonymous SNV ENSMUST00000064355:c.C1642T:p.L548L 4qD3 NA NA chr4 138956249 GTCxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.797437 0.800245 0.99649 60 2 0 33.579098 0.382353 0.02 -0.306941 21 13 616 372 60 60 0 1 CC 4.512014 15 0 421 0 KEEP + Ubr4 YES MNNG_1 chr4 139027232 139027232 C T exonic Ubr4 nonsynonymous SNV NM_001160319:c.C13522T:p.L4508F exonic Ubr4 nonsynonymous SNV uc008vmm.2:c.C13522T:p.L4508F exonic ENSMUSG00000066036 nonsynonymous SNV ENSMUST00000097822:c.C13522T:p.L4508F 4qD3 NA NA chr4 139027232 AAGxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582854 0.58293 0.999869 58 2 0 28.820295 0.44 0.02 -0.227441 14 11 376 310 60 60 0 0 CC 6.316267 21 0 580 0 KEEP + Ubr4 YES MNNG_1 chr4 140308625 140308625 G A intronic Padi4 NA NA intronic Padi4 NA NA intronic ENSMUSG00000025330 NA NA 4qD3 NA NA chr4 140308625 AGAxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138942 0.139832 0.993634 24 0 0 9.991315 0.333333 0.02 -0.105234 8 4 230 114 60 60 0 0 GG 3.609768 12 0 340 0 KEEP - Padi4 YES MNNG_1 chr4 141028170 141028170 G A exonic Spen synonymous SNV NM_019763:c.C9060T:p.T3020T exonic Spen synonymous SNV uc008vom.1:c.C7776T:p.T2592T exonic ENSMUSG00000040761 synonymous SNV ENSMUST00000078886:c.C8991T:p.T2997T 4qE1 NA NA chr4 141028170 GGAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 302 2 0 176.484171 0.452703 0.02 2.271655 81 67 2379 1888 60 60 0 0 GG 32.109563 107 0 2967 0 KEEP - Spen YES MNNG_1 chr4 141183840 141183840 G A intronic Plekhm2 NA NA intronic Plekhm2 NA NA intronic ENSMUSG00000028917 NA NA 4qE1 NA NA chr4 141183840 CCGxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 115 1 0 85.373978 0.54386 0.02 1.187569 26 31 709 876 60 60 0 0 GG 12.330048 41 0 1113 0 KEEP - Plekhm2 YES MNNG_1 chr4 141332949 141332949 G A exonic Dnajc16 nonsynonymous SNV NM_172338:c.C614T:p.A205V exonic Dnajc16 nonsynonymous SNV uc008vpf.1:c.C614T:p.A205V exonic ENSMUSG00000040697 nonsynonymous SNV ENSMUST00000038014:c.C614T:p.A205V 4qE1 NA NA chr4 141332949 TGGxCCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 150 2 0 107.030339 0.541667 0.02 1.063814 33 39 968 1100 60 60 0 0 GG 15.335449 51 0 1405 0 KEEP - Dnajc16 YES MNNG_1 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.640941 0.641347 0.999366 55 0 0 28.702805 0.428571 0.02 -0.245352 16 12 468 313 60 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 YES MNNG_1 chr4 146360788 146360788 G A intergenic "Zfp600(dist=194638),Rex2(dist=35171)" NA NA exonic Gm13235 nonsynonymous SNV uc008vso.1:c.G76A:p.E26K ncRNA_exonic ENSMUSG00000086147 NA NA 4qE1 "Score=0.988492;Name=No.86785,chr4:146084567" NA chr4 146360788 GAGxAAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 460 46 77 18.408387 0.147059 0.02 1.099445 58 10 1684 259 53 53 0 0 GG 98.052344 326 0 9215 0 KEEP + Zfp600 YES MNNG_1 chr4 147403458 147403458 C T intronic Clcn6 NA NA intronic Clcn6 NA NA intronic ENSMUSG00000029016 NA NA 4qE2 NA NA chr4 147403458 AGAxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 61 0 0 10.457695 0.217391 0.02 -0.201686 18 5 509 133 60 60 0 0 CC 9.022473 30 0 818 0 KEEP - Clcn6 YES MNNG_1 chr4 147828694 147828694 C T exonic Mtor nonsynonymous SNV NM_020009:c.C538T:p.P180S exonic Mtor nonsynonymous SNV uc008vuq.2:c.C538T:p.P180S exonic ENSMUSG00000028991 nonsynonymous SNV ENSMUST00000057580:c.C538T:p.P180S 4qE2 NA NA chr4 147828694 GTCxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 127 0 0 33.444849 0.297872 0.02 -0.420789 33 14 950 392 60 60 0 0 CC 16.544219 55 0 1548 0 KEEP + Mtor YES MNNG_1 chr4 149102154 149102154 C T exonic Tmem201 stopgain SNV NM_001025106:c.G813A:p.W271X exonic Tmem201 stopgain SNV uc008vxb.1:c.G336A:p.W112X exonic ENSMUSG00000044700 stopgain SNV ENSMUST00000052951:c.G813A:p.W271X 4qE2 NA NA chr4 149102154 CTGxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973847 0.973965 0.999879 80 0 0 53.738127 0.407407 0.02 1.221753 32 22 927 591 60 60 0 0 CC 6.616954 22 0 606 0 KEEP - Tmem201 YES MNNG_1 chr4 149136452 149136452 C T intronic Slc25a33 NA NA intronic Slc25a33 NA NA intronic ENSMUSG00000028982 NA NA 4qE2 NA NA chr4 149136452 AGGxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 71 0 0 28.982894 0.571429 0.02 -0.18407 9 12 264 295 60 60 0 0 CC 13.530182 45 0 1210 0 KEEP - Slc25a33 YES MNNG_1 chr4 149884065 149884065 C T exonic Rere nonsynonymous SNV NM_001085492:c.C1022T:p.A341V exonic Rere nonsynonymous SNV uc012dpv.1:c.C1022T:p.A341V exonic ENSMUSG00000039852 nonsynonymous SNV ENSMUST00000105680:c.C218T:p.A73V 4qE2 NA NA chr4 149884065 TTGxAGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 148 2 0 35.015931 0.333333 0.02 -0.394601 30 15 876 403 60 60 0 0 CC 21.355353 71 0 1999 0 KEEP + Rere YES MNNG_1 chr4 153359493 153359493 G C exonic Cep104 nonsynonymous SNV NM_177673:c.G814C:p.A272P exonic BC046331 nonsynonymous SNV uc008wax.1:c.G814C:p.A272P exonic ENSMUSG00000039523 nonsynonymous SNV ENSMUST00000047497:c.G814C:p.A272P 4qE2 NA NA chr4 153359493 CTGxCCA G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.999859 52 0 0 8.663237 0.153846 0.02 -0.228031 22 4 651 116 60 60 0 0 GG 5.413487 18 0 498 0 KEEP + Cep104 NO MNNG_1 chr4 154364033 154364033 G A exonic Plch2 nonsynonymous SNV NM_001113360:c.C2561T:p.P854L exonic Plch2 nonsynonymous SNV uc012dqo.1:c.C1763T:p.P588L exonic ENSMUSG00000029055 nonsynonymous SNV ENSMUST00000030929:c.C2561T:p.P854L 4qE2 NA NA chr4 154364033 CGTxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999406 0.999407 0.999999 140 0 0 70.697545 0.37037 0.02 1.075418 51 30 1418 796 60 60 0 0 GG 10.524661 35 0 958 0 KEEP - Plch2 YES MNNG_1 chr4 154961526 154961526 A G exonic Nadk nonsynonymous SNV NM_001159637:c.A752G:p.D251G exonic Nadk nonsynonymous SNV uc008wdv.2:c.A581G:p.D194G exonic ENSMUSG00000029063 nonsynonymous SNV ENSMUST00000097745:c.A581G:p.D194G 4qE2 NA NA chr4 154961526 GAGxCAA A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 37 0 0 29.120767 0.666667 0.02 -0.131534 5 10 140 285 60 60 0 0 AA 4.812664 16 0 447 0 KEEP + Nadk NO MNNG_1 chr4 155023691 155023691 C T exonic Cdk11b nonsynonymous SNV NM_007661:c.C2233T:p.P745S exonic Cdk11b nonsynonymous SNV uc008wec.1:c.C2230T:p.P744S exonic ENSMUSG00000029062 nonsynonymous SNV ENSMUST00000105600:c.C2233T:p.P745S 4qE2 NA NA chr4 155023691 CCTxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 200 3 0 155.159562 0.554455 0.02 2.504734 45 56 1302 1586 60 60 0 0 CC 21.011651 70 0 1972 0 KEEP + Cdk11b YES MNNG_1 chr4 155069580 155069580 C T UTR3 B930041F14Rik NA NA UTR3 B930041F14Rik NA NA ncRNA_exonic ENSMUSG00000091921 NA NA 4qE2 NA NA chr4 155069580 ATTxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 118 0 0 107.847188 0.59375 0.02 1.125214 26 38 742 1085 60 60 0 0 CC 12.92589 43 0 1192 0 KEEP + B930041F14Rik YES MNNG_1 chr4 155237383 155237383 C T exonic Tas1r3 nonsynonymous SNV NM_031872:c.G61A:p.A21T exonic Tas1r3 nonsynonymous SNV uc008wff.1:c.G61A:p.A21T exonic ENSMUSG00000029072 nonsynonymous SNV ENSMUST00000030949:c.G61A:p.A21T 4qE2 NA NA chr4 155237383 AGGxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58289 0.58293 0.999931 55 0 0 40.951292 0.625 0.02 -0.22797 9 15 261 407 60 60 0 0 CC 7.507812 25 0 682 0 KEEP - Tas1r3 YES MNNG_1 chr4 155499604 155499604 C T exonic 9430015G10Rik nonsynonymous SNV NM_145557:c.C581T:p.A194V exonic 9430015G10Rik nonsynonymous SNV uc012drh.1:c.C485T:p.A162V exonic ENSMUSG00000059939 nonsynonymous SNV ENSMUST00000105576:c.C485T:p.A162V 4qE2 NA NA chr4 155499604 AGGxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 114 4 0 90.357978 0.64 0.02 1.239314 18 32 518 893 60 60 0 0 CC 13.534492 45 0 1242 0 KEEP + 9430015G10Rik YES MNNG_1 chr4 3099824 3099824 G A exonic Vmn1r2 nonsynonymous SNV NM_001167534:c.G595A:p.A199T exonic Vmn1r2 nonsynonymous SNV uc012dad.1:c.G595A:p.A199T exonic ENSMUSG00000078367 nonsynonymous SNV ENSMUST00000105160:c.G595A:p.A199T 4qA1 "Score=0.979603;Name=No.86934,chr5:3000000" NA chr4 3099824 ATGxCCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 444 2 121 31.810032 0.185185 0.02 0.976187 66 15 1882 415 60 60 0 0 GG 83.592966 278 0 7661 0 KEEP + Vmn1r2 YES MNNG_1 chr4 42863941 42863941 C T exonic Gm12429 synonymous SNV NM_001277167:c.G1086A:p.Q362Q intergenic "DQ565859(dist=2735),BC049635(dist=16934)" NA NA exonic ENSMUSG00000078721 synonymous SNV ENSMUST00000107979:c.G1086A:p.Q362Q 4qA5 "Score=0.977332;Name=No.85963,chr4:42483632" NA chr4 42863941 GGTxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 281 3 0 83.09604 0.421053 0.02 1.011197 44 32 1297 903 55 55 0 0 CC 47.530806 158 0 4533 0 KEEP NA Gm12429 YES MNNG_1 chr4 43006583 43006583 C A exonic Vcp synonymous SNV NM_009503:c.G420T:p.L140L exonic Vcp synonymous SNV uc008sor.2:c.G420T:p.L140L exonic ENSMUSG00000028452 synonymous SNV ENSMUST00000030164:c.G420T:p.L140L 4qA5 NA NA chr4 43006583 TTCxAGG C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 167 0 1 61.03048 0.511111 0.02 -0.394463 22 23 630 636 60 60 0 0 CC 27.975725 93 0 2651 0 KEEP - Vcp NO MNNG_1 chr4 43019755 43019755 C T exonic Fancg nonsynonymous SNV NM_001163233:c.G806A:p.R269K exonic Fancg nonsynonymous SNV uc008sos.2:c.G806A:p.R269K exonic ENSMUSG00000028453 nonsynonymous SNV ENSMUST00000030165:c.G806A:p.R269K 4qA5 NA NA chr4 43019755 GCTxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 93 1 0 28.870102 0.27907 0.02 -0.377099 31 12 899 342 60 60 0 0 CC 13.837656 46 0 1310 0 KEEP - Fancg YES MNNG_1 chr4 43428431 43428431 C A exonic Rusc2 synonymous SNV NM_001037709:c.C864A:p.V288V exonic Rusc2 synonymous SNV uc008spm.1:c.C864A:p.V288V exonic ENSMUSG00000035969 synonymous SNV ENSMUST00000131668:c.C864A:p.V288V 4qA5 NA NA chr4 43428431 AGTxACC C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 253 2 0 59.559377 0.215385 0.02 2.233211 102 28 2951 756 60 60 0 0 CC 24.74138 85 1 2391 7 KEEP + Rusc2 NO MNNG_1 chr4 43459961 43459961 C T exonic Tesk1 synonymous SNV NM_011571:c.C1476T:p.A492A exonic Tesk1 synonymous SNV uc008spq.2:c.C1476T:p.A492A exonic ENSMUSG00000028458 synonymous SNV ENSMUST00000060864:c.C1476T:p.A492A 4qB1 NA NA chr4 43459961 GGCxACT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 145 4 0 116.266326 0.542169 0.02 1.048457 38 45 1097 1197 60 60 0 0 CC 13.536411 45 0 1271 0 KEEP + Tesk1 YES MNNG_1 chr4 43525317 43525317 C T intronic Car9 NA NA intronic Car9 NA NA intronic ENSMUSG00000028463 NA NA 4qB1 NA NA chr4 43525317 AGTxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 165 3 0 92.075235 0.523077 0.02 1.107662 31 34 919 954 60 60 0 0 CC 22.863273 76 0 2185 0 KEEP + Car9 YES MNNG_1 chr4 43981017 43981017 C T exonic Glipr2 nonsynonymous SNV NM_027450:c.C47T:p.A16V exonic Glipr2 nonsynonymous SNV uc008srf.1:c.C47T:p.A16V exonic ENSMUSG00000028480 nonsynonymous SNV ENSMUST00000030202:c.C47T:p.A16V 4qB1 NA NA chr4 43981017 AGGxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.13983 0.139832 0.999988 48 0 0 21.591873 0.666667 0.02 -0.105195 4 8 116 211 60 60 0 0 CC 8.12044 27 0 740 0 KEEP + Glipr2 YES MNNG_1 chr4 45006679 45006679 A C exonic Zbtb5 nonsynonymous SNV NM_001163283:c.T1576G:p.F526V exonic Zbtb5 nonsynonymous SNV uc008ssc.2:c.T1576G:p.F526V exonic ENSMUSG00000049657 nonsynonymous SNV ENSMUST00000055028:c.T1576G:p.F526V 4qB1 "Score=0.975512;Name=No.10005,chr10:89016210" NA chr4 45006679 GAAxGTT A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 231 2 0 76.174369 0.507937 0.02 1.134242 31 32 881 799 60 60 0 0 AA 35.493018 118 0 3307 0 KEEP - Zbtb5 NO MNNG_1 chr4 63043423 63043423 G A exonic Akna stopgain SNV NM_001045514:c.C1828T:p.Q610X exonic Akna stopgain SNV uc008tgb.2:c.C1828T:p.Q610X exonic ENSMUSG00000039158 stopgain SNV ENSMUST00000035724:c.C1828T:p.Q610X 4qC1 NA NA chr4 63043423 GCTxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 155 2 0 131.333353 0.607595 0.02 0.994233 31 48 873 1314 60 60 0 0 GG 16.772586 56 0 1570 0 KEEP - Akna YES MNNG_1 chr4 63058855 63058855 G A intronic Akna NA NA intronic Akna NA NA intronic ENSMUSG00000039158 NA NA 4qC1 NA NA chr4 63058855 GAAxGTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 39 0 0 20.697567 0.5 0.02 -0.149067 8 8 229 217 60 60 0 0 GG 5.415134 18 0 520 0 KEEP - Akna YES MNNG_1 chr4 63155970 63155970 G A exonic Whrn nonsynonymous SNV NM_001008791:c.C298T:p.P100S exonic Whrn nonsynonymous SNV uc008tgh.1:c.C298T:p.P100S exonic ENSMUSG00000039137 nonsynonymous SNV ENSMUST00000063650:c.C298T:p.P100S 4qC1 NA NA chr4 63155970 GCGxGAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 62 0 0 28.85654 0.458333 0.02 -0.210475 13 11 386 308 60 60 0 0 GG 9.021722 30 0 814 0 KEEP - Whrn YES MNNG_1 chr4 64850424 64850424 G A exonic Pappa synonymous SNV NM_021362:c.G2037A:p.V679V exonic Pappa synonymous SNV uc008thm.1:c.G2037A:p.V679V exonic ENSMUSG00000028370 synonymous SNV ENSMUST00000084501:c.G2037A:p.V679V 4qC1 NA NA chr4 64850424 TGTxGGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 71 2 0 17.215336 0.35 0.02 -0.175399 13 7 384 195 60 60 0 0 GG 12.325415 41 0 1142 0 KEEP + Pappa YES MNNG_1 chr4 65455497 65455497 G A intronic Astn2 NA NA intronic Astn2 NA NA intronic ENSMUSG00000028373 NA NA 4qC1 NA NA chr4 65455497 TAGxCTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 234 0 0 86.504937 0.507937 0.02 1.142874 31 32 883 902 60 60 0 0 GG 38.765719 129 0 3565 0 KEEP - Astn2 YES MNNG_1 chr4 82840620 82840620 G A intergenic "Frem1(dist=142549),Ttc39b(dist=25585)" NA NA intergenic "Frem1(dist=142549),Ttc39b(dist=25585)" NA NA ncRNA_exonic ENSMUSG00000083245 NA NA 4qC3 "Score=0.958665;Name=No.15124,chr11:26686559" NA chr4 82840620 GTGxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 412 3 1 148.229042 0.486726 0.02 2.390683 58 55 1697 1560 60 60 0 0 GG 70.272743 234 0 6564 0 KEEP NA Frem1 YES MNNG_1 chr4 86501873 86501873 G A exonic Rps6 nonsynonymous SNV NM_009096:c.C394T:p.R132W exonic Rps6 nonsynonymous SNV uc008tme.1:c.C394T:p.R132W exonic ENSMUSG00000028495 nonsynonymous SNV ENSMUST00000102814:c.C394T:p.R132W 4qC4 NA NA chr4 86501873 ACCxACG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 75 3 6 15.680514 0.4 0.02 -0.131467 9 6 239 172 60 60 0 0 GG 13.825589 46 0 1197 0 KEEP - Rps6 YES MNNG_1 chr4 8728452 8728452 G A intronic Chd7 NA NA intronic Chd7 NA NA intronic ENSMUSG00000041235 NA NA 4qA1 NA NA chr4 8728452 AGTxATG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 83 0 0 19.608183 0.470588 0.02 -0.14906 9 8 261 209 60 60 0 0 GG 14.440405 48 0 1388 0 KEEP + Chd7 YES MNNG_1 chr4 88473781 88473781 G A exonic Ifna6 synonymous SNV NM_206871:c.G462A:p.L154L exonic Ifna6 synonymous SNV uc008tnz.1:c.G462A:p.L154L exonic ENSMUSG00000078641 synonymous SNV ENSMUST00000071378:c.G462A:p.L154L 4qC4 "Score=0.916049;Name=No.86311,chr4:88322173" NA chr4 88473781 CCTxAGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 513 20 63 95.573414 0.344538 0.02 3.566392 78 41 2278 1093 55 36 0 0 GG 81.519848 271 0 7802 0 KEEP + Ifna6 YES MNNG_1 chr4 98612232 98612232 G A exonic Dock7 nonsynonymous SNV NM_026082:c.C5542T:p.L1848F exonic Dock7 nonsynonymous SNV uc008tuo.1:c.C3505T:p.L1169F exonic ENSMUSG00000028556 nonsynonymous SNV ENSMUST00000127417:c.C1429T:p.L477F 4qC6 NA NA chr4 98612232 CAAxCAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 70 0 0 33.747235 0.666667 0.02 -0.157811 6 12 165 330 60 60 0 0 GG 13.235051 44 0 1236 0 KEEP - Dock7 YES MNNG_1 chr5 100828539 100828539 G A intronic Sec31a NA NA intronic Sec31a NA NA intronic ENSMUSG00000035325 NA NA 5qE4 NA NA chr5 100828539 CAAxCAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 164 2 0 70.014494 0.424242 0.02 1.107713 38 28 1098 762 60 60 0 0 GG 21.653928 72 0 1989 0 KEEP - Sec31a YES MNNG_1 chr5 102339963 102339963 G A exonic Wdfy3 synonymous SNV NM_172882:c.C4501T:p.L1501L exonic Wdfy3 synonymous SNV uc008yis.2:c.C4501T:p.L1501L exonic ENSMUSG00000043940 synonymous SNV ENSMUST00000174598:c.C4501T:p.L1501L 5qE5 NA NA chr5 102339963 GCAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 79 2 0 9.423307 0.307692 0.02 -0.122778 9 4 268 110 60 60 0 0 GG 14.138967 47 0 1346 0 KEEP - Wdfy3 YES MNNG_1 chr5 104488716 104488716 C T exonic Nudt9 nonsynonymous SNV NM_028794:c.C704T:p.A235V exonic Nudt9 nonsynonymous SNV uc008yka.1:c.C704T:p.A235V exonic ENSMUSG00000029310 nonsynonymous SNV ENSMUST00000031250:c.C704T:p.A235V 5qE5 NA NA chr5 104488716 AAGxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 174 1 0 8.67928 0.089286 0.02 1.160342 51 5 1453 136 60 37 0 0 CC 27.950674 93 0 2540 0 KEEP + Nudt9 YES MNNG_1 chr5 105755596 105755596 A G exonic Gbp11 unknown UNKNOWN exonic Gbp11 nonsynonymous SNV uc008ylc.2:c.T1232C:p.L411P exonic ENSMUSG00000092021 nonsynonymous SNV ENSMUST00000171587:c.T1232C:p.L411P 5qE5 NA NA chr5 105755596 GAAxGTC A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 377 10 21 27.052351 0.116071 0.02 2.596141 99 13 2815 383 60 60 0 0 AA 63.161539 210 0 5826 0 KEEP - Gbp11 NO MNNG_1 chr5 108592693 108592693 G A exonic Ccdc18 synonymous SNV NM_028481:c.G1245A:p.R415R exonic Ccdc18 synonymous SNV uc008ynr.1:c.G1245A:p.R415R exonic ENSMUSG00000056531 synonymous SNV ENSMUST00000047677:c.G1245A:p.R415R 5qF NA NA chr5 108592693 TAGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 0.999999 64 2 0 20.196386 0.5 0.02 -0.140287 8 8 227 212 60 60 0 0 GG 10.826866 36 0 981 0 KEEP + Ccdc18 YES MNNG_1 chr5 109103001 109103001 G A exonic Slc26a1 synonymous SNV NM_174870:c.C40T:p.L14L exonic Slc26a1 synonymous SNV uc008yox.2:c.C88T:p.L30L exonic ENSMUSG00000046959 synonymous SNV ENSMUST00000051757:c.C40T:p.L14L 5qF NA NA chr5 109103001 CCAxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 193 2 0 116.607552 0.432432 0.02 2.409888 63 48 1784 1267 60 60 0 0 GG 14.435604 48 0 1324 0 KEEP + Slc26a1 YES MNNG_1 chr5 110618875 110618875 G A exonic Golga3 nonsynonymous SNV NM_008146:c.G1409A:p.R470K exonic Golga3 nonsynonymous SNV uc008yqc.1:c.G1529A:p.R510K exonic ENSMUSG00000029502 nonsynonymous SNV ENSMUST00000031477:c.G1529A:p.R510K 5qF NA NA chr5 110618875 AGAxACT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 45 0 0 9.368709 0.222222 0.02 -0.157863 14 4 408 116 60 60 0 0 GG 7.520163 25 0 708 0 KEEP + Golga3 YES MNNG_1 chr5 111097055 111097055 G A intronic Ep400 NA NA intronic Ep400 NA NA intronic ENSMUSG00000029505 NA NA 5qF NA NA chr5 111097055 AAAxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 131 0 0 84.935077 0.516667 0.02 1.169022 29 31 855 882 60 60 0 0 GG 15.037349 50 0 1389 0 KEEP - Ep400 YES MNNG_1 chr5 111105562 111105562 G A exonic Ep400 nonsynonymous SNV NM_173066:c.C7315T:p.P2439S exonic Ep400 nonsynonymous SNV uc008yrf.1:c.C3220T:p.P1074S exonic ENSMUSG00000029505 nonsynonymous SNV ENSMUST00000112436:c.C7315T:p.P2439S 5qF NA NA chr5 111105562 GGGxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999977 0.999978 1 153 1 0 119.724414 0.489796 0.02 2.488913 50 48 1427 1263 60 60 0 0 GG 11.423893 38 0 1028 0 KEEP - Ep400 YES MNNG_1 chr5 114205339 114205339 G A intronic Sart3 NA NA intronic Sart3 NA NA intronic ENSMUSG00000018974 NA NA 5qF NA NA chr5 114205339 AGGxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 77 0 0 27.89935 0.392857 0.02 -0.245542 17 11 488 308 60 60 0 0 GG 12.631831 42 0 1166 0 KEEP - Sart3 YES MNNG_1 chr5 121007884 121007884 G A exonic Tpcn1 synonymous SNV NM_145853:c.C312T:p.V104V exonic Tpcn1 synonymous SNV uc008zhl.1:c.C105T:p.V35V exonic ENSMUSG00000032741 synonymous SNV ENSMUST00000046426:c.C312T:p.V104V 5qF NA NA chr5 121007884 GTGxACG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 104 0 0 50.989257 0.377358 0.02 1.221787 33 20 940 567 60 60 0 0 GG 11.731601 39 0 1103 0 KEEP - Tpcn1 YES MNNG_1 chr5 125303230 125303230 G A exonic Dnah10 nonsynonymous SNV NM_019536:c.G11521A:p.E3841K exonic Dnahc10 nonsynonymous SNV uc008zqq.2:c.G862A:p.E288K exonic ENSMUSG00000038011 nonsynonymous SNV ENSMUST00000058440:c.G11521A:p.E3841K 5qF NA NA chr5 125303230 TTTxAGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 111 2 0 69.518918 0.490909 0.02 1.212947 28 27 820 732 60 60 0 0 GG 12.935684 43 0 1235 0 KEEP + Dnah10 YES MNNG_1 chr5 129258433 129258433 G A intronic Piwil1 NA NA intronic Piwil1 NA NA intronic ENSMUSG00000029423 NA NA 5qG1.3 NA NA chr5 129258433 TCAxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 196 1 0 57.749 0.431373 0.02 1.247946 29 22 863 624 60 60 0 0 GG 35.495958 118 0 3352 0 KEEP + Piwil1 YES MNNG_1 chr5 130107891 130107891 G A splicing Mmp17(NM_011846:exon7:c.1063+1G>A) NA NA splicing Mmp17(uc008zsy.1:exon7:c.1063+1G>A) NA NA splicing ENSMUSG00000029436(ENSMUST00000031390:exon7:c.1063+1G>A) NA NA 5qG1.3 NA NA chr5 130107891 AAGxTAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 158 0 0 112.845558 0.494118 0.02 0.932312 43 42 1244 1184 60 60 0 0 GG 19.241382 64 0 1738 0 KEEP + Mmp17 YES MNNG_1 chr5 135725290 135725290 G A exonic Fzd9 nonsynonymous SNV NM_010246:c.C1610T:p.T537I exonic Fzd9 nonsynonymous SNV uc008zya.2:c.C1610T:p.T537I exonic ENSMUSG00000049551 nonsynonymous SNV ENSMUST00000062572:c.C1610T:p.T537I 5qG2 NA NA chr5 135725290 CAAxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992796 0.992926 0.999869 92 2 0 71.011259 0.451613 0.02 1.13406 34 28 971 762 60 60 0 0 GG 6.316858 21 0 591 0 KEEP - Fzd9 YES MNNG_1 chr5 135846218 135846218 G A intronic Nsun5 NA NA intronic Nsun5 NA NA intronic ENSMUSG00000000916 NA NA 5qG2 NA NA chr5 135846218 GTGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 255 6 0 155.570917 0.535714 0.02 2.408819 52 60 1478 1606 60 60 0 0 GG 29.407293 98 0 2624 0 KEEP + Nsun5 YES MNNG_1 chr5 137744142 137744142 G A exonic Srrt synonymous SNV NM_001109909:c.C249T:p.D83D exonic Srrt synonymous SNV uc009acb.2:c.C249T:p.D83D exonic ENSMUSG00000037364 synonymous SNV ENSMUST00000040873:c.C249T:p.D83D 5qG2 NA NA chr5 137744142 CCAxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 176 7 0 68.37691 0.367089 0.02 0.976798 50 29 1404 771 60 60 0 0 GG 20.13235 67 0 1833 0 KEEP - Srrt YES MNNG_1 chr5 137964162 137964162 G A intronic Gigyf1 NA NA intronic Gigyf1 NA NA intronic "ENSMUSG00000029711,ENSMUSG00000029714" NA NA 5qG2 NA NA chr5 137964162 CAGxCGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 167 0 0 145.014758 0.540816 0.02 0.818313 45 53 1305 1491 60 60 0 0 GG 15.272663 51 0 1388 0 KEEP + Gigyf1 YES MNNG_1 chr5 138049857 138049857 C T intronic Pcolce NA NA intronic Pcolce NA NA exonic ENSMUSG00000029718 nonsynonymous SNV ENSMUST00000054564:c.G523A:p.G175S 5qG2 NA NA chr5 138049857 AACxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999315 0.999317 0.999997 140 4 0 96.187033 0.514286 0.02 1.083514 34 36 965 1001 60 60 0 1 CC 9.023767 30 0 837 0 KEEP - Pcolce YES MNNG_1 chr5 138176707 138176707 G A exonic Nyap1 nonsynonymous SNV NM_175521:c.C1291T:p.P431S exonic 6430598A04Rik nonsynonymous SNV uc009adq.1:c.C1291T:p.P431S exonic ENSMUSG00000045348 nonsynonymous SNV ENSMUST00000118326:c.C1291T:p.P431S 5qG2 NA NA chr5 138176707 TGGxGCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 203 4 0 148.77568 0.427481 0.02 2.41191 75 56 2195 1609 60 60 0 0 GG 14.720725 49 0 1314 0 KEEP - Nyap1 YES MNNG_1 chr5 138337949 138337949 G A intronic Cyp3a13 NA NA intronic Cyp3a13 NA NA intronic ENSMUSG00000029727 NA NA 5qG2 NA NA chr5 138337949 ATAxTTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 84 2 0 24.786789 0.529412 0.02 -0.149092 8 9 237 256 60 60 0 0 GG 16.841805 56 0 1589 0 KEEP - Cyp3a13 YES MNNG_1 chr5 138631546 138631546 G A exonic Cnpy4 nonsynonymous SNV NM_178612:c.G185A:p.G62D exonic Cnpy4 nonsynonymous SNV uc009aez.1:c.G185A:p.G62D exonic ENSMUSG00000036968 nonsynonymous SNV ENSMUST00000110932:c.G146A:p.G49D 5qG2 NA NA chr5 138631546 CTGxCCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 202 1 0 119.375574 0.45 0.02 2.496636 55 45 1618 1278 60 60 0 0 GG 21.005472 70 0 1911 0 KEEP + Cnpy4 YES MNNG_1 chr5 139526687 139526687 T C exonic Prkar1b synonymous SNV NM_001253890:c.A633G:p.R211R exonic Prkar1b synonymous SNV uc009afy.2:c.A633G:p.R211R exonic ENSMUSG00000025855 synonymous SNV ENSMUST00000110889:c.A261G:p.R87R 5qG2 NA NA chr5 139526687 CGCxCTG T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996232 0.996233 1 126 0 0 101.691768 0.521739 0.02 1.287487 33 36 929 1053 60 60 0 0 TT 11.112017 37 0 996 0 KEEP - Prkar1b NO MNNG_1 chr5 140020572 140020572 G A exonic Uncx synonymous SNV NM_013702:c.G450A:p.E150E exonic "Uncx,Uncx4.1" synonymous SNV uc009agu.1:c.G450A:p.E150E exonic ENSMUSG00000029546 nonsynonymous SNV ENSMUST00000172997:c.G419A:p.S140N 5qG2 NA NA chr5 140020572 CGAxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 177 4 0 98.367713 0.45977 0.02 0.932792 47 40 1354 1054 60 60 0 0 GG 17.965281 60 0 1635 0 KEEP + Uncx YES MNNG_1 chr5 140248047 140248047 G A exonic Ints1 synonymous SNV NM_026748:c.C849T:p.A283A exonic Ints1 synonymous SNV uc009ahc.2:c.C849T:p.A283A exonic ENSMUSG00000029547 synonymous SNV ENSMUST00000072607:c.C768T:p.A256A 5qG2 NA NA chr5 140248047 GAAxGCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 447 9 0 288.944057 0.475336 0.02 5.183464 117 106 3368 3054 60 60 0 0 GG 50.179531 167 0 4628 0 KEEP - Ints1 YES MNNG_1 chr5 141105296 141105296 G A intronic Ttyh3 NA NA intronic Ttyh3 NA NA intronic ENSMUSG00000036565 NA NA 5qG2 NA NA chr5 141105296 CATxCCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998865 0.998867 0.999997 120 0 0 68.79002 0.402597 0.02 0.825496 46 31 1370 766 60 60 0 0 GG 9.325735 31 0 889 0 KEEP - Ttyh3 YES MNNG_1 chr5 142963052 142963052 G A exonic Radil synonymous SNV NM_178702:c.C2487T:p.Y829Y exonic Radil synonymous SNV uc009ais.1:c.C1767T:p.Y589Y exonic ENSMUSG00000029576 synonymous SNV ENSMUST00000110784:c.C1767T:p.Y589Y 5qG2 NA NA chr5 142963052 GTGxTAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926528 0.92664 0.999879 78 0 0 51.070583 0.454545 0.02 -0.394593 24 20 679 547 60 60 0 0 GG 6.614196 22 0 587 0 KEEP - Radil YES MNNG_1 chr5 143851913 143851913 G A exonic Rnf216 synonymous SNV NM_080561:c.C723T:p.D241D exonic Rnf216 synonymous SNV uc009ajm.2:c.C723T:p.D241D exonic ENSMUSG00000045078 synonymous SNV ENSMUST00000053498:c.C894T:p.D298D 5qG2 NA NA chr5 143851913 AGGxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 143 1 0 81.531782 0.470588 0.02 1.090232 36 32 1042 867 60 60 0 0 GG 15.940775 53 0 1463 0 KEEP - Rnf216 YES MNNG_1 chr5 143980437 143980437 G A exonic Spdyb nonsynonymous SNV NM_029048:c.C763T:p.P255S exonic "4933411G11Rik,Spdyb" nonsynonymous SNV uc009ajs.1:c.C763T:p.P255S exonic ENSMUSG00000039296 nonsynonymous SNV ENSMUST00000085733:c.C763T:p.P255S 5qG2 NA NA chr5 143980437 CTGxATT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 157 0 0 50.683382 0.377358 0.02 1.14272 33 20 981 564 60 60 0 0 GG 21.952014 73 0 2057 0 KEEP - Spdyb YES MNNG_1 chr5 144927220 144927220 T C exonic Lmtk2 synonymous SNV NM_001081109:c.T927C:p.A309A exonic Lmtk2 synonymous SNV uc009alg.1:c.T927C:p.A309A exonic ENSMUSG00000038970 synonymous SNV ENSMUST00000041804:c.T927C:p.A309A 5qG2 NA NA chr5 144927220 TGCxCCA T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 74 0 0 34.294664 0.571429 0.02 -0.184168 9 12 257 348 60 60 0 0 TT 13.23498 44 0 1233 0 KEEP + Lmtk2 NO MNNG_1 chr5 145594242 145594242 G A exonic Trrap nonsynonymous SNV NM_001081362:c.G8246A:p.R2749Q exonic Trrap nonsynonymous SNV uc009alu.1:c.G4382A:p.R1461Q exonic ENSMUSG00000045482 nonsynonymous SNV ENSMUST00000038980:c.G8246A:p.R2749Q 5qG2 NA NA chr5 145594242 AGCxATG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 225 0 0 109.5677 0.409524 0.02 2.461409 62 43 1590 1199 60 60 0 0 GG 28.547221 95 0 2469 0 KEEP + Trrap YES MNNG_1 chr5 147022842 147022842 G A exonic Rnf6 nonsynonymous SNV NM_001256085:c.C941T:p.S314F exonic Rnf6 nonsynonymous SNV uc009anb.1:c.C941T:p.S314F exonic ENSMUSG00000029634 nonsynonymous SNV ENSMUST00000067837:c.C941T:p.S314F 5qG3 NA NA chr5 147022842 TGGxAAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 183 0 0 89.751163 0.459459 0.02 1.046455 40 34 1159 957 60 60 0 0 GG 27.670521 92 0 2590 0 KEEP - Rnf6 YES MNNG_1 chr5 151855033 151855033 G A exonic Stard13 synonymous SNV NM_001163493:c.C2244T:p.Y748Y exonic Stard13 synonymous SNV uc009aum.2:c.C2187T:p.Y729Y exonic ENSMUSG00000016128 synonymous SNV ENSMUST00000062015:c.C2244T:p.Y748Y 5qG3 NA NA chr5 151855033 GTCxTAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 110 2 0 60.226291 0.511111 0.02 -0.394561 22 23 595 628 60 60 0 0 GG 15.930659 53 0 1356 0 KEEP - Stard13 YES MNNG_1 chr5 23919892 23919892 T A exonic Asic3 synonymous SNV NM_183000:c.T363A:p.A121A exonic Accn3 synonymous SNV uc008wrj.1:c.T363A:p.A121A exonic ENSMUSG00000038276 synonymous SNV ENSMUST00000049346:c.T363A:p.A121A 5qA3 NA NA chr5 23919892 TGCxGAA T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 323 4 0 245.48508 0.474227 0.02 3.679279 102 92 2949 2599 60 60 0 0 TT 29.75957 99 0 2717 0 KEEP + Asic3 NO MNNG_1 chr5 28086683 28086683 G A intronic Paxip1 NA NA intronic Paxip1 NA NA intronic ENSMUSG00000002221 NA NA 5qB1 NA NA chr5 28086683 CTAxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668494 0.668523 0.999957 62 0 0 42.262947 0.551724 0.02 -0.25429 13 16 380 433 60 60 0 0 GG 7.819327 26 0 720 0 KEEP - Paxip1 YES MNNG_1 chr5 31556355 31556355 G A intronic Ift172 NA NA intronic Ift172 NA NA intronic ENSMUSG00000038564 NA NA 5qB1 NA NA chr5 31556355 GAGxTAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970716 0.97082 0.999892 87 0 0 44.495038 0.367347 0.02 1.230502 31 18 869 499 60 60 0 0 GG 6.917727 23 0 634 0 KEEP - Ift172 YES MNNG_1 chr5 33950327 33950327 G A exonic Fam53a nonsynonymous SNV NM_178390:c.C683T:p.S228F exonic Fam53a nonsynonymous SNV uc008xat.2:c.C683T:p.S228F exonic ENSMUSG00000037339 nonsynonymous SNV ENSMUST00000101361:c.C512T:p.S171F 5qB2 NA NA chr5 33950327 AGGxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 163 0 0 129.985516 0.505155 0.02 0.836781 48 49 1418 1359 60 60 0 0 GG 16.841448 56 0 1564 0 KEEP - Fam53a YES MNNG_1 chr5 34808625 34808625 C T exonic Fam193a nonsynonymous SNV NM_001243123:c.C3910T:p.P1304S exonic "BC037112,Fam193a" nonsynonymous SNV uc008xci.1:c.C184T:p.P62S exonic ENSMUSG00000037210 nonsynonymous SNV ENSMUST00000094867:c.C3049T:p.P1017S 5qB2 NA NA chr5 34808625 GACxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 243 5 0 95.918415 0.431818 0.02 1.022824 50 38 1471 1040 60 60 0 0 CC 31.281823 104 0 2914 0 KEEP + Fam193a YES MNNG_1 chr5 35226648 35226648 C T exonic Htt nonsynonymous SNV NM_010414:c.C6596T:p.T2199I exonic "Hdh,Htt" nonsynonymous SNV uc008xdd.1:c.C638T:p.T213I exonic ENSMUSG00000029104 nonsynonymous SNV ENSMUST00000114300:c.C5156T:p.T1719I 5qB2 NA NA chr5 35226648 TGAxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.999859 36 0 0 12.070871 0.5 0.02 -0.087665 5 5 145 127 60 60 0 0 CC 5.413876 18 0 496 0 KEEP + Htt YES MNNG_1 chr5 35264013 35264013 C T intronic Msantd1 NA NA intronic A930005I04Rik NA NA intronic ENSMUSG00000051246 NA NA 5qB2 NA NA chr5 35264013 CACxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 171 6 0 87.295494 0.492308 0.02 1.223504 33 32 959 916 60 60 0 0 CC 24.94485 83 0 2282 0 KEEP + Msantd1 YES MNNG_1 chr5 37220827 37220827 C T intronic Man2b2 NA NA intronic Man2b2 NA NA intronic ENSMUSG00000029119 NA NA 5qB3 NA NA chr5 37220827 TACxTTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 68 1 0 34.848384 0.419355 0.02 -0.271781 18 13 507 378 60 60 0 0 CC 8.413189 28 0 765 0 KEEP - Man2b2 YES MNNG_1 chr5 37671717 37671717 T A exonic Crmp1 nonsynonymous SNV NM_001136058:c.T1165A:p.F389I exonic Crmp1 nonsynonymous SNV uc008xfl.1:c.T1165A:p.F389I exonic ENSMUSG00000029121 nonsynonymous SNV ENSMUST00000031004:c.T823A:p.F275I 5qB3 NA NA chr5 37671717 GTCxTCG T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 144 2 0 52.140078 0.297297 0.02 1.028765 52 22 1489 612 60 60 0 0 TT 14.438025 48 0 1340 0 KEEP + Crmp1 NO MNNG_1 chr5 53060292 53060292 C T exonic Sepsecs nonsynonymous SNV NM_172490:c.G115A:p.G39S exonic Sepsecs nonsynonymous SNV uc008xko.1:c.G115A:p.G39S exonic ENSMUSG00000029173 nonsynonymous SNV ENSMUST00000031069:c.G115A:p.G39S 5qC1 NA NA chr5 53060292 TGCxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 65 0 0 20.345503 0.444444 0.02 -0.183083 10 8 278 219 60 60 0 0 CC 10.828443 36 0 1004 0 KEEP - Sepsecs YES MNNG_1 chr5 5575431 5575431 G A ncRNA_exonic Gm8773 NA NA exonic Gm8773 synonymous SNV uc008wit.2:c.G126A:p.E42E exonic ENSMUSG00000073234 synonymous SNV ENSMUST00000101627:c.G126A:p.E42E 5qA1 NA NA chr5 5575431 AGAxGGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 92 1 0 65.214301 0.621622 0.02 -0.324373 14 23 394 649 60 60 0 0 GG 12.934585 43 0 1220 0 KEEP + Gm8773 YES MNNG_1 chr5 65788841 65788841 G A splicing Lias(NM_024471:exon5:c.391-1G>A) NA NA splicing "Lias(uc008xnq.1:exon5:c.391-1G>A,uc008xnr.1:exon5:c.139-1G>A)" NA NA splicing "ENSMUSG00000029199(ENSMUST00000031101:exon5:c.391-1G>A,ENSMUST00000122026:exon5:c.139-1G>A)" NA NA 5qC3.1 NA NA chr5 65788841 CTAxTTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 71 0 0 24.845231 0.357143 0.02 -0.245535 18 10 518 280 60 60 0 0 GG 9.313754 31 0 874 0 KEEP + Lias YES MNNG_1 chr5 66379738 66379738 G A ncRNA_exonic 9130230L23Rik NA NA ncRNA_exonic 9130230L23Rik NA NA exonic ENSMUSG00000054598 stopgain SNV ENSMUST00000165250:c.C268T:p.Q90X 5qC3.1 NA NA chr5 66379738 TCTxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 65 0 0 29.653354 0.4 0.02 -0.271859 18 12 539 327 60 60 0 0 GG 8.723638 29 0 831 0 KEEP - 9130230L23Rik YES MNNG_1 chr5 78118300 78118300 A T intergenic "Pea15b(dist=177527),NONE(dist=NONE)" NA NA intergenic "Pea15b(dist=177527),NONE(dist=NONE)" NA NA intergenic "ENSMUSG00000089415(dist=19429),ENSMUSG00000044058(dist=784610)" NA NA 5qC3.3 "Score=0.93997;Name=No.90055,chr5:5795871" NA chr5 78118300 GGGxGGA A T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP UNCOVERED 0.098347 0.099721 0.986224 36 2 0 16.837781 0.6 0.02 -0.087698 4 6 117 169 60 60 0 0 AA 6.608117 22 0 600 0 KEEP NA Pea15b NO MNNG_1 chr5 8397729 8397729 G A exonic Dbf4 nonsynonymous SNV NM_001190717:c.C1477T:p.P493S exonic Dbf4 nonsynonymous SNV uc008wkc.2:c.C1480T:p.P494S exonic ENSMUSG00000002297 nonsynonymous SNV ENSMUST00000002368:c.C1477T:p.P493S 5qA1 NA NA chr5 8397729 GTGxTTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 134 2 0 68.193333 0.482143 0.02 1.187049 29 27 837 722 60 60 0 0 GG 19.251018 64 0 1796 0 KEEP - Dbf4 YES MNNG_1 chr5 87090656 87090656 G A exonic Tmprss11bnl nonsynonymous SNV NM_177024:c.C1001T:p.T334I exonic Tmprss11bnl nonsynonymous SNV uc008xxu.1:c.C1001T:p.T334I exonic ENSMUSG00000035861 nonsynonymous SNV ENSMUST00000038448:c.C1001T:p.T334I 5qE1 NA NA chr5 87090656 CAAxTAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 97 0 0 38.226887 0.483871 0.02 -0.280564 16 15 445 404 60 60 0 0 GG 16.542122 55 0 1527 0 KEEP - Tmprss11bnl YES MNNG_1 chr5 92492358 92492358 G A intronic G3bp2 NA NA intronic G3bp2 NA NA ncRNA_intronic ENSMUSG00000084111 NA NA 5qE2 NA NA chr5 92492358 TTGxTTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 54 0 0 17.575671 0.4375 0.02 -0.140306 9 7 260 190 60 60 0 0 GG 9.62517 32 0 892 0 KEEP - G3bp2 YES MNNG_1 chr5 93472882 93472882 G A exonic Sowahb nonsynonymous SNV NM_175270:c.C1003T:p.P335S exonic Ankrd56 nonsynonymous SNV uc008ydw.1:c.C1003T:p.P335S exonic ENSMUSG00000045314 nonsynonymous SNV ENSMUST00000061328:c.C1003T:p.P335S 5qE2 NA NA chr5 93472882 CGGxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 109 0 0 53.562092 0.396226 0.02 1.221688 32 21 919 590 60 60 0 0 GG 13.536959 45 0 1282 0 KEEP - Sowahb YES MNNG_1 chr6 103591965 103591965 A G exonic Chl1 nonsynonymous SNV NM_007697:c.A1G:p.M1V exonic Chl1 nonsynonymous SNV uc009dck.1:c.A1G:p.M1V exonic ENSMUSG00000030077 nonsynonymous SNV ENSMUST00000032163:c.A1G:p.M1V 6qE1 NA NA chr6 103591965 GGAxTGA A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 90 2 0 18.619232 0.5 0.02 -0.122724 7 7 198 195 60 60 0 0 AA 15.639414 52 0 1423 0 KEEP + Chl1 NO MNNG_1 chr6 108367929 108367929 C T exonic Itpr1 synonymous SNV NM_010585:c.C5008T:p.L1670L exonic Itpr1 synonymous SNV uc009ddh.2:c.C5008T:p.L1670L exonic ENSMUSG00000030102 synonymous SNV ENSMUST00000113208:c.C4951T:p.L1651L 6qE1 NA NA chr6 108367929 AAAxTAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 98 0 0 16.84836 0.291667 0.02 -0.210485 17 7 502 198 60 60 0 0 CC 17.437868 58 0 1631 0 KEEP + Itpr1 YES MNNG_1 chr6 113367185 113367185 C T exonic Rpusd3 nonsynonymous SNV NM_001033204:c.G529A:p.G177R exonic Rpusd3 nonsynonymous SNV uc009dfy.2:c.G529A:p.G177R exonic ENSMUSG00000051169 nonsynonymous SNV ENSMUST00000060634:c.G529A:p.G177R 6qE3 NA NA chr6 113367185 TCCxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 113 0 0 47.529109 0.45 0.02 -0.350768 22 18 634 509 60 60 0 0 CC 18.642384 62 0 1726 0 KEEP - Rpusd3 YES MNNG_1 chr6 113746290 113746290 C T exonic Atp2b2 nonsynonymous SNV NM_001036684:c.G1009A:p.E337K exonic Atp2b2 nonsynonymous SNV uc009dhn.1:c.G1009A:p.E337K exonic ENSMUSG00000030302 nonsynonymous SNV ENSMUST00000089002:c.G1009A:p.E337K 6qE3 NA NA chr6 113746290 TCTxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 107 0 0 40.413777 0.355556 0.02 -0.403419 29 16 852 455 60 60 0 0 CC 14.439548 48 0 1374 0 KEEP - Atp2b2 YES MNNG_1 chr6 116597637 116597637 G C exonic Rassf4 nonsynonymous SNV NM_178045:c.C229G:p.R77G exonic Rassf4 nonsynonymous SNV uc009dkm.2:c.C229G:p.R77G exonic ENSMUSG00000042129 nonsynonymous SNV ENSMUST00000035842:c.C229G:p.R77G 6qE3 NA NA chr6 116597637 CTCxCTC G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.636582 0.641347 0.99257 44 2 0 24.140014 0.357143 0.02 -0.24542 18 10 504 273 60 60 0 0 GG 2.401713 8 0 182 0 KEEP - Rassf4 NO MNNG_1 chr6 118574364 118574364 C T intronic Cacna1c NA NA intronic Cacna1c NA NA intronic ENSMUSG00000051331 NA NA 6qF1 NA NA chr6 118574364 GCAxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 157 2 0 30.664146 0.27451 0.02 1.230501 37 14 1042 370 60 60 0 0 CC 23.37716 78 0 2084 0 KEEP - Cacna1c YES MNNG_1 chr6 118577569 118577569 C T exonic Cacna1c nonsynonymous SNV NM_001159533:c.G3965A:p.R1322H exonic Cacna1c nonsynonymous SNV uc012erg.1:c.G1562A:p.R521H exonic ENSMUSG00000051331 nonsynonymous SNV ENSMUST00000112825:c.G3155A:p.R1052H 6qF1 NA NA chr6 118577569 ATGxGGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.420782 0.423478 0.993634 39 0 0 29.234712 0.52381 0.02 -0.184096 10 11 259 303 60 60 0 0 CC 3.606106 12 0 304 0 KEEP - Cacna1c YES MNNG_1 chr6 120173574 120173574 C T intronic B4galnt3 NA NA intronic B4galnt3 NA NA intronic ENSMUSG00000041372 NA NA 6qF1 NA NA chr6 120173574 GCAxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.99986 37 0 0 15.648456 0.5 0.02 -0.105226 6 6 169 164 60 60 0 0 CC 5.698616 19 0 500 0 KEEP - B4galnt3 YES MNNG_1 chr6 121274307 121274307 C T exonic Slc6a13 nonsynonymous SNV NM_144512:c.C503T:p.A168V exonic Slc6a13 nonsynonymous SNV uc009doi.1:c.C503T:p.A168V exonic ENSMUSG00000030108 nonsynonymous SNV ENSMUST00000064580:c.C503T:p.A168V 6qF1 NA NA chr6 121274307 AGGxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 166 2 0 37.261318 0.365854 0.02 -0.359562 26 15 762 418 60 60 0 0 CC 26.10894 87 0 2347 0 KEEP + Slc6a13 YES MNNG_1 chr6 122800533 122800533 C T exonic C3ar1 nonsynonymous SNV NM_009779:c.G742A:p.D248N exonic C3ar1 nonsynonymous SNV uc009dps.1:c.G742A:p.D248N exonic ENSMUSG00000040552 nonsynonymous SNV ENSMUST00000042081:c.G742A:p.D248N 6qF2 NA NA chr6 122800533 AATxTAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260933 0.260965 0.999879 46 2 0 20.597719 0.5 0.02 -0.140248 8 8 225 216 60 60 0 0 CC 6.618447 22 0 634 0 KEEP - C3ar1 YES MNNG_1 chr6 123073638 123073638 G A exonic Clec4a2 synonymous SNV NM_001170333:c.G33A:p.K11K exonic Clec4a2 synonymous SNV uc009dqb.2:c.G33A:p.K11K exonic ENSMUSG00000030148 synonymous SNV ENSMUST00000032248:c.G33A:p.K11K 6qF2 NA NA chr6 123073638 GAAxTTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 1 67 0 0 32.282676 0.785714 0.02 -0.122765 3 11 90 302 60 60 0 0 GG 11.130172 37 0 1054 0 KEEP + Clec4a2 YES MNNG_1 chr6 123265649 123265649 T G exonic Vmn2r19 nonsynonymous SNV NM_001104632:c.T631G:p.F211V exonic Vmn2r19 nonsynonymous SNV uc009vdu.1:c.T631G:p.F211V exonic ENSMUSG00000091260 nonsynonymous SNV ENSMUST00000073948:c.T631G:p.F211V 6qF2 NA NA chr6 123265649 TACxTCA T G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 155 2 0 42.601303 0.472222 0.02 -0.315417 19 17 530 453 60 60 0 0 TT 30.676957 102 0 2838 0 KEEP + Vmn2r19 NO MNNG_1 chr6 124306932 124306932 G A exonic 1700013D24Rik nonsynonymous SNV NM_001177502:c.C106T:p.P36S exonic 1700013D24Rik nonsynonymous SNV uc009dqp.2:c.C106T:p.P36S exonic ENSMUSG00000079346 nonsynonymous SNV ENSMUST00000112537:c.C106T:p.P36S 6qF2 NA NA chr6 124306932 AAGxCGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 123 0 0 61.410249 0.564103 0.02 -0.341688 17 22 467 625 60 60 0 0 GG 21.330492 74 1 2068 8 KEEP - 1700013D24Rik YES MNNG_1 chr6 124655094 124655094 G A exonic Emg1 nonsynonymous SNV NM_013536:c.C484T:p.P162S exonic Emg1 nonsynonymous SNV uc009drg.2:c.C484T:p.P162S exonic ENSMUSG00000004268 nonsynonymous SNV ENSMUST00000004379:c.C484T:p.P162S 6qF2 NA NA chr6 124655094 CTGxATT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 0.999999 71 0 0 34.40153 0.464286 0.02 -0.245558 15 13 441 366 60 60 0 0 GG 10.826171 36 0 1016 0 KEEP - Emg1 YES MNNG_1 chr6 124865005 124865005 G A exonic Ptms synonymous SNV NM_026988:c.C48T:p.D16D exonic Ptms synonymous SNV uc009dsm.2:c.C48T:p.D16D exonic ENSMUSG00000030122 synonymous SNV ENSMUST00000032216:c.C48T:p.D16D 6qF2 NA NA chr6 124865005 CAGxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 345 2 0 121.957904 0.411765 0.02 2.329544 70 49 1949 1336 60 60 0 0 GG 48.711139 162 0 4433 0 KEEP - Ptms YES MNNG_1 chr6 12505055 12505055 C T exonic Thsd7a nonsynonymous SNV NM_001164805:c.G829A:p.G277R exonic Thsd7a nonsynonymous SNV uc009ayj.2:c.G829A:p.G277R exonic ENSMUSG00000032625 nonsynonymous SNV ENSMUST00000046121:c.G829A:p.G277R 6qA1 NA NA chr6 12505055 TTCxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 320 7 0 106.658011 0.362069 0.02 2.543488 74 42 2166 1196 60 60 0 0 CC 43.701361 148 1 4153 7 KEEP - Thsd7a YES MNNG_1 chr6 125520582 125520582 G A exonic Vwf synonymous SNV NM_011708:c.G597A:p.R199R exonic Vwf synonymous SNV uc009duq.1:c.G606A:p.R202R exonic ENSMUSG00000001930 synonymous SNV ENSMUST00000001995:c.G597A:p.R199R 6qF3 NA NA chr6 125520582 GCGxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94174 0.941741 0.999999 97 2 0 54.710428 0.466667 0.02 -0.412169 24 21 705 582 60 60 0 0 GG 10.827172 36 0 999 0 KEEP + Vwf YES MNNG_1 chr6 127607895 127607895 G A intergenic "Efcab4b(dist=27939),Prmt8(dist=31132)" NA NA intergenic "Efcab4b(dist=27939),Prmt8(dist=31134)" NA NA intergenic "ENSMUSG00000061414(dist=27939),ENSMUSG00000030350(dist=31134)" NA NA 6qF3 NA NA chr6 127607895 ACAxCCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 116 2 0 49.714309 0.425532 0.02 -0.412157 27 20 798 541 60 60 0 0 GG 13.836904 46 0 1297 0 KEEP NA Efcab4b YES MNNG_1 chr6 128382729 128382729 G A intronic Fkbp4 NA NA intronic Fkbp4 NA NA intronic ENSMUSG00000030357 NA NA 6qF3 NA NA chr6 128382729 TCAxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457707 0.457757 0.999892 54 0 0 31.639734 0.545455 0.02 -0.192871 10 12 277 325 60 60 0 0 GG 6.902699 23 0 626 0 KEEP - Fkbp4 YES MNNG_1 chr6 128473992 128473992 C T exonic Pzp synonymous SNV NM_007376:c.G420A:p.Q140Q exonic Pzp synonymous SNV uc009eef.1:c.G420A:p.Q140Q exonic ENSMUSG00000030359 synonymous SNV ENSMUST00000032510:c.G420A:p.Q140Q 6qF3 NA NA chr6 128473992 TATxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 0.999998 59 0 0 14.776517 0.4 0.02 -0.131542 9 6 269 163 60 60 0 0 CC 10.228492 34 0 980 0 KEEP - Pzp YES MNNG_1 chr6 128518901 128518901 G A exonic BC048546 nonsynonymous SNV NM_001001179:c.C1280T:p.S427F exonic BC048546 nonsynonymous SNV uc009eeh.2:c.C1280T:p.S427F exonic ENSMUSG00000047228 nonsynonymous SNV ENSMUST00000060574:c.C1280T:p.S427F 6qF3 NA NA chr6 128518901 GGGxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 66 0 0 16.802283 0.304348 0.02 -0.210455 16 7 463 196 60 60 0 0 GG 9.024048 30 0 845 0 KEEP - BC048546 YES MNNG_1 chr6 129439005 129439005 G A intronic Olr1 NA NA intronic Olr1 NA NA intronic ENSMUSG00000030162 NA NA 6qF3 NA NA chr6 129439005 ATAxAAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 45 0 0 12.623137 0.384615 0.02 -0.11401 8 5 235 140 60 60 0 0 GG 8.422486 28 0 799 0 KEEP - Olr1 YES MNNG_1 chr6 131579938 131579938 T A exonic Tas2r130 nonsynonymous SNV NM_199156:c.A911T:p.K304M exonic Tas2r130 nonsynonymous SNV uc009eiv.1:c.A911T:p.K304M exonic ENSMUSG00000054497 nonsynonymous SNV ENSMUST00000067597:c.A911T:p.K304M 6qF3 NA NA chr6 131579938 GTCxTTA T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999998 50 0 0 10.076729 0.363636 0.02 -0.096469 7 4 203 113 60 60 0 0 TT 10.226396 34 0 946 0 KEEP - Tas2r130 NO MNNG_1 chr6 132388794 132388794 G A intergenic "Gm4736(dist=74641),Prh1(dist=131066)" NA NA ncRNA_exonic BC069935 NA NA intergenic "ENSMUSG00000030143(dist=74642),ENSMUSG00000064832(dist=126196)" NA NA 6qG1 "Score=0.924401;Name=No.94157,chr6:132258895" NA chr6 132388794 GGGxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 747 6 83 163.639532 0.37766 0.02 3.412813 117 71 3312 1839 60 60 0 1 GG 130.297646 434 0 11537 0 KEEP - Gm4736 YES MNNG_1 chr6 132798128 132798128 C T exonic Tas2r123 synonymous SNV NM_207025:c.C969T:p.C323C exonic Tas2r123 synonymous SNV uc009ejq.1:c.C969T:p.C323C exonic ENSMUSG00000057381 synonymous SNV ENSMUST00000071696:c.C969T:p.C323C 6qG1 NA NA chr6 132798128 GTGxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 48 0 0 35.649054 0.705882 0.02 -0.149088 5 12 144 344 60 60 0 0 CC 7.519606 25 0 695 0 KEEP + Tas2r123 YES MNNG_1 chr6 132901662 132901662 C T exonic Tas2r129 synonymous SNV NM_207029:c.C543T:p.V181V exonic Tas2r129 synonymous SNV uc009ejv.1:c.C543T:p.V181V exonic ENSMUSG00000063762 synonymous SNV ENSMUST00000070991:c.C543T:p.V181V 6qG1 NA NA chr6 132901662 AGTxATT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 81 0 0 24.519445 0.6 0.02 -0.140113 6 9 161 246 60 60 0 0 CC 17.447506 58 0 1653 0 KEEP + Tas2r129 YES MNNG_1 chr6 139990827 139990827 G A exonic Capza3 synonymous SNV NM_007605:c.G630A:p.K210K exonic Capza3 synonymous SNV uc009eoa.2:c.G630A:p.K210K exonic ENSMUSG00000041791 synonymous SNV ENSMUST00000043797:c.G630A:p.K210K 6qG2 NA NA chr6 139990827 AAAxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 50 0 0 12.822483 0.357143 0.02 -0.131557 9 5 267 144 60 60 0 0 GG 9.024777 30 0 857 0 KEEP + Capza3 YES MNNG_1 chr6 142309549 142309549 G A intronic "Pyroxd1,Recql" NA NA intronic "Pyroxd1,Recql" NA NA intronic "ENSMUSG00000030243,ENSMUSG00000041671" NA NA 6qG2 NA NA chr6 142309549 TTGxCTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043781 0.043787 0.999869 34 0 0 7.053231 0.428571 0.02 -0.061366 4 3 114 77 60 60 0 0 GG 6.015143 20 0 546 0 KEEP + Pyroxd1 YES MNNG_1 chr6 142983618 142983618 C T exonic C2cd5 nonsynonymous SNV NM_001109688:c.G1940A:p.R647K exonic "5730419I09Rik,Kiaa0528" nonsynonymous SNV uc009epy.2:c.G1373A:p.R458K exonic ENSMUSG00000030279 nonsynonymous SNV ENSMUST00000070301:c.G1373A:p.R458K 6qG3 NA NA chr6 142983618 GATxTTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 71 0 0 28.294403 0.52381 0.02 -0.183756 10 11 301 294 60 60 0 0 CC 11.732797 39 0 1127 0 KEEP - C2cd5 YES MNNG_1 chr6 144967855 144967855 C T exonic Bcat1 synonymous SNV NM_001024468:c.G732A:p.K244K exonic Bcat1 synonymous SNV uc009eqs.2:c.G732A:p.K244K exonic ENSMUSG00000030268 synonymous SNV ENSMUST00000032402:c.G732A:p.K244K 6qG3 NA NA chr6 144967855 AGGxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.321674 0.322807 0.99649 36 0 0 23.383968 0.529412 0.02 -0.157834 8 9 237 242 60 60 0 0 CC 4.511864 15 0 420 0 KEEP - Bcat1 YES MNNG_1 chr6 146767342 146767342 G A exonic Arntl2 nonsynonymous SNV NM_172309:c.G481A:p.A161T exonic Arntl2 nonsynonymous SNV uc009esj.1:c.G481A:p.A161T exonic ENSMUSG00000040187 nonsynonymous SNV ENSMUST00000080530:c.G481A:p.A161T 6qG3 NA NA chr6 146767342 CAGxCTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 165 0 0 41.34015 0.4 0.02 -0.350797 24 16 705 454 60 60 0 0 GG 28.864895 96 0 2633 0 KEEP + Arntl2 YES MNNG_1 chr6 146981726 146981726 G A exonic Rep15 synonymous SNV NM_025620:c.G540A:p.G180G exonic Rep15 synonymous SNV uc009esr.1:c.G540A:p.G180G exonic ENSMUSG00000040121 synonymous SNV ENSMUST00000036194:c.G540A:p.G180G 6qG3 NA NA chr6 146981726 CGGxATG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 95 0 0 38.562089 0.365854 0.02 -0.377125 26 15 771 431 60 60 0 0 GG 12.032421 40 0 1135 0 KEEP + Rep15 YES MNNG_1 chr6 148843519 148843519 G A exonic Caprin2 synonymous SNV NM_181541:c.C117T:p.T39T exonic Caprin2 synonymous SNV uc009eto.1:c.C117T:p.T39T exonic ENSMUSG00000030309 synonymous SNV ENSMUST00000139914:c.C117T:p.T39T 6qG3 NA NA chr6 148843519 ATAxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 60 0 0 31.696486 0.5 0.02 -0.210469 12 12 353 332 60 60 0 0 GG 10.228474 34 0 980 0 KEEP - Caprin2 YES MNNG_1 chr6 149276902 149276902 G A exonic 2810474O19Rik nonsynonymous SNV NM_026054:c.G2923A:p.E975K exonic 2810474O19Rik nonsynonymous SNV uc009eud.2:c.G2923A:p.E975K exonic ENSMUSG00000032712 nonsynonymous SNV ENSMUST00000046689:c.G2923A:p.E975K 6qG3 NA NA chr6 149276902 GGAxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 42 0 0 13.798837 0.555556 0.02 -0.07893 4 5 119 141 60 60 0 0 GG 8.7239 29 0 829 0 KEEP + 2810474O19Rik YES MNNG_1 chr6 24826697 24826697 G A exonic Hyal5 nonsynonymous SNV NM_028957:c.G568A:p.E190K exonic Hyal5 nonsynonymous SNV uc009bcb.1:c.G568A:p.E190K exonic ENSMUSG00000029678 nonsynonymous SNV ENSMUST00000031689:c.G568A:p.E190K 6qA3.1 NA NA chr6 24826697 GAAxAGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043781 0.043787 0.999869 31 1 0 14.864906 0.714286 0.02 -0.061391 2 5 60 143 60 60 0 0 GG 6.317647 21 0 606 0 KEEP + Hyal5 YES MNNG_1 chr6 28476076 28476076 A G exonic Snd1 nonsynonymous SNV NM_019776:c.A452G:p.E151G exonic Snd1 nonsynonymous SNV uc009bct.1:c.A452G:p.E151G exonic ENSMUSG00000001424 nonsynonymous SNV ENSMUST00000164915:c.A373G:p.N125D 6qA3.3 NA NA chr6 28476076 CAGxATG A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 99 2 0 17.303503 0.25 0.02 -0.254308 21 7 588 208 60 60 0 0 AA 15.632267 52 0 1405 0 KEEP + Snd1 NO MNNG_1 chr6 29328074 29328074 G A intronic Opn1sw NA NA intronic Opn1sw NA NA intronic ENSMUSG00000058831 NA NA 6qA3.3 NA NA chr6 29328074 GAAxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 120 0 0 53.835416 0.625 0.02 -0.280562 12 20 340 535 60 60 0 0 GG 19.550593 65 0 1808 0 KEEP - Opn1sw YES MNNG_1 chr6 29370241 29370241 C T intronic Ccdc136 NA NA intronic Ccdc136 NA NA exonic ENSMUSG00000029769 synonymous SNV ENSMUST00000096084:c.C3432T:p.P1144P 6qA3.3 NA NA chr6 29370241 CCCxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 54 0 0 15.368958 0.352941 0.02 -0.149095 11 6 324 173 60 60 0 1 CC 7.758682 26 0 705 0 KEEP + Ccdc136 YES MNNG_1 chr6 29410794 29410794 C T exonic Flnc nonsynonymous SNV NM_001081185:c.C7883T:p.S2628F exonic Flnc nonsynonymous SNV uc009bdo.2:c.C7784T:p.S2595F exonic ENSMUSG00000068699 nonsynonymous SNV ENSMUST00000090472:c.C7784T:p.S2595F 6qA3.3 NA NA chr6 29410794 GTTxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 122 0 0 51.749763 0.408163 0.02 -0.429727 29 20 849 566 60 60 0 0 CC 16.543452 55 0 1548 0 KEEP + Flnc YES MNNG_1 chr6 29410882 29410882 C T exonic Flnc synonymous SNV NM_001081185:c.C7971T:p.F2657F exonic Flnc synonymous SNV uc009bdo.2:c.C7872T:p.F2624F exonic ENSMUSG00000068699 synonymous SNV ENSMUST00000090472:c.C7872T:p.F2624F 6qA3.3 NA NA chr6 29410882 ATTxACC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.986153 0.986153 1 136 1 0 74.932114 0.508475 0.02 1.177945 29 30 866 784 60 60 0 0 CC 16.244628 54 0 1547 0 KEEP + Flnc YES MNNG_1 chr6 29423710 29423710 G A downstream Gm9047 NA NA UTR3 Kcp NA NA UTR3 ENSMUSG00000059022 NA NA 6qA3.3 NA NA chr6 29423710 AGGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 214 5 0 150.142582 0.471074 0.02 2.31183 64 57 1861 1593 60 60 0 0 GG 20.641791 69 0 1850 0 KEEP - Gm9047 YES MNNG_1 chr6 29703595 29703595 C T exonic Smo nonsynonymous SNV NM_176996:c.C469T:p.P157S exonic Smo nonsynonymous SNV uc009bef.2:c.C469T:p.P157S exonic ENSMUSG00000001761 nonsynonymous SNV ENSMUST00000001812:c.C469T:p.P157S 6qA3.3 NA NA chr6 29703595 GGCxCCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 202 0 0 80.552096 0.347826 0.02 0.969215 60 32 1726 911 60 60 1 0 CC 23.155688 77 0 2117 0 KEEP + Smo YES MNNG_1 chr6 30323329 30323329 G A exonic Zc3hc1 nonsynonymous SNV NM_172735:c.C931T:p.P311S exonic Zc3hc1 nonsynonymous SNV uc009bfc.1:c.C592T:p.P198S exonic ENSMUSG00000039130 nonsynonymous SNV ENSMUST00000136255:c.C559T:p.P187S 6qA3.3 NA NA chr6 30323329 CAGxCCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 143 0 0 100.229405 0.59375 0.02 1.13432 26 38 735 1009 60 60 0 0 GG 19.218452 64 0 1722 0 KEEP - Zc3hc1 YES MNNG_1 chr6 30396664 30396664 G A exonic Klhdc10 nonsynonymous SNV NM_029742:c.G817A:p.G273R exonic Klhdc10 nonsynonymous SNV uc009bff.1:c.G730A:p.G244R exonic ENSMUSG00000029775 nonsynonymous SNV ENSMUST00000068240:c.G730A:p.G244R 6qA3.3 NA NA chr6 30396664 TTGxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 361 7 0 142.62665 0.51 0.02 2.701287 49 51 1433 1484 60 60 0 0 GG 59.510406 198 0 5504 0 KEEP + Klhdc10 YES MNNG_1 chr6 30590522 30590522 G A exonic Cpa1 synonymous SNV NM_025350:c.G162A:p.R54R exonic Cpa1 synonymous SNV uc009bfq.1:c.G162A:p.R54R exonic ENSMUSG00000054446 synonymous SNV ENSMUST00000031806:c.G162A:p.R54R 6qA3.3 NA NA chr6 30590522 GCGxGAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 109 0 0 77.128126 0.537037 0.02 1.311271 25 29 732 795 60 60 0 0 GG 11.730654 39 0 1089 0 KEEP + Cpa1 YES MNNG_1 chr6 31116623 31116623 G A intergenic "Mir29b-1(dist=103530),2210408F21Rik(dist=53728)" NA NA ncRNA_exonic BC145649 NA NA exonic ENSMUSG00000044471 nonsynonymous SNV ENSMUST00000050386:c.C196T:p.P66S 6qA3.3 NA NA chr6 31116623 CAGxTAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 122 3 0 75.455484 0.454545 0.02 1.116507 36 30 1006 809 60 60 0 0 GG 13.532091 45 0 1204 0 KEEP - Mir29b-1 YES MNNG_1 chr6 34256623 34256623 C T splicing Akr1b3(NM_009658:exon10:c.826-1G>A) NA NA splicing Akr1b3(uc009bgy.2:exon10:c.826-1G>A) NA NA splicing ENSMUSG00000001642(ENSMUST00000102980:exon10:c.826-1G>A) NA NA 6qB1 NA NA chr6 34256623 GACxTTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.0768 0.077336 0.993072 22 0 0 7.543349 0.333333 0.02 -0.078933 6 3 177 86 60 60 0 0 CC 3.309181 11 0 316 0 KEEP - Akr1b3 YES MNNG_1 chr6 35265346 35265346 G A exonic Fam180a nonsynonymous SNV NM_173375:c.C124T:p.P42S exonic Fam180a nonsynonymous SNV uc009bir.1:c.C124T:p.P42S exonic ENSMUSG00000047420 nonsynonymous SNV ENSMUST00000051176:c.C124T:p.P42S 6qB1 NA NA chr6 35265346 ATGxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 147 0 0 71.306903 0.4375 0.02 1.134116 36 28 1019 770 60 60 0 0 GG 16.843336 56 0 1547 0 KEEP - Fam180a YES MNNG_1 chr6 36865405 36865405 G A exonic Dgki synonymous SNV NM_001081206:c.C2637T:p.D879D exonic Dgki synonymous SNV uc009bjc.1:c.C861T:p.D287D exonic ENSMUSG00000038665 synonymous SNV ENSMUST00000042075:c.C2121T:p.D707D 6qB1 NA NA chr6 36865405 CAGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 124 3 0 73.11749 0.6 0.02 -0.394566 18 27 501 734 60 60 0 0 GG 18.584892 62 0 1683 0 KEEP - Dgki YES MNNG_1 chr6 38124202 38124202 G A exonic D630045J12Rik nonsynonymous SNV NM_194061:c.C3760T:p.L1254F exonic D630045J12Rik nonsynonymous SNV uc009bjv.2:c.C3337T:p.L1113F exonic ENSMUSG00000063455 nonsynonymous SNV ENSMUST00000117556:c.C2923T:p.L975F 6qB1 NA NA chr6 38124202 GGAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 162 0 0 127.088126 0.582278 0.02 1.101124 33 46 945 1285 60 60 0 0 GG 21.354933 71 0 2003 0 KEEP - D630045J12Rik YES MNNG_1 chr6 38825842 38825842 G A UTR5 Hipk2 NA NA UTR5 Hipk2 NA NA UTR5 ENSMUSG00000061436 NA NA 6qB1 NA NA chr6 38825842 CATxGCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291368 0.292001 0.997832 45 0 0 17.536137 0.411765 0.02 -0.14907 10 7 295 192 60 60 0 0 GG 4.798345 16 0 418 0 KEEP - Hipk2 YES MNNG_1 chr6 39068708 39068708 G A ncRNA_exonic 4930599N23Rik NA NA ncRNA_exonic AK016417 NA NA ncRNA_exonic ENSMUSG00000073144 NA NA 6qB1 NA NA chr6 39068708 GCGxGGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353909 0.353947 0.999892 46 0 0 29.625853 0.578947 0.02 -0.166602 8 11 235 300 60 60 0 0 GG 6.917547 23 0 632 0 KEEP + 4930599N23Rik YES MNNG_1 chr6 40337437 40337437 C T intronic Agk NA NA intronic Agk NA NA intronic ENSMUSG00000029916 NA NA 6qB1 NA NA chr6 40337437 TTCxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322767 0.322807 0.999879 50 0 0 18.84138 0.411765 0.02 -0.148975 10 7 275 205 60 60 0 0 CC 6.617742 22 0 620 0 KEEP + Agk YES MNNG_1 chr6 40415897 40415897 C T exonic Wee2 nonsynonymous SNV NM_201370:c.C1603T:p.H535Y exonic Wee2 nonsynonymous SNV uc009bmq.2:c.C1603T:p.H535Y exonic ENSMUSG00000037159 nonsynonymous SNV ENSMUST00000038907:c.C1603T:p.H535Y 6qB1 NA NA chr6 40415897 AGAxACC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 127 4 0 62.164459 0.5 0.02 -0.43837 25 25 697 653 60 60 0 0 CC 18.947027 63 0 1730 0 KEEP + Wee2 YES MNNG_1 chr6 40916227 40916227 C T exonic 1810009J06Rik nonsynonymous SNV NM_023707:c.C106T:p.P36S exonic 1810009J06Rik nonsynonymous SNV uc009bnn.1:c.C106T:p.P36S exonic ENSMUSG00000036996 nonsynonymous SNV ENSMUST00000076638:c.C106T:p.P36S 6qB1 "Score=0.984735;Name=No.93601,chr6:40914496" NA chr6 40916227 GTTxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 332 1 148 87.642031 0.571429 0.02 1.20418 24 32 706 890 46 60 0 0 CC 52.012743 173 0 4889 0 KEEP + 1810009J06Rik YES MNNG_1 chr6 40997868 40997868 T G intergenic "2210010C04Rik(dist=12360),Try4(dist=254403)" NA NA exonic "TCRB,Vb10a" nonsynonymous SNV uc009bnp.1:c.T218G:p.L73R exonic ENSMUSG00000076462 nonsynonymous SNV ENSMUST00000103263:c.T218G:p.L73R 6qB1 NA NA chr6 40997868 AACxTAT T G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 64 2 0 10.481482 0.238095 0.02 -0.184126 16 5 449 131 60 60 0 0 TT 10.828874 36 0 1011 0 KEEP + 2210010C04Rik NO MNNG_1 chr6 41261695 41261695 G A exonic Try5 synonymous SNV NM_001003405:c.C588T:p.C196C exonic Try5 synonymous SNV uc009bot.2:c.C588T:p.C196C exonic ENSMUSG00000036938 synonymous SNV ENSMUST00000064324:c.C588T:p.C196C 6qB1 NA NA chr6 41261695 CTGxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 109 3 0 43.275408 0.681818 0.02 -0.20169 7 15 200 421 60 60 0 0 GG 21.264243 71 0 1934 0 KEEP + Try5 YES MNNG_1 chr6 41306490 41306490 G A intronic Try10 NA NA ncRNA_intronic Z12226 NA NA intronic ENSMUSG00000071521 NA NA 6qB1 "Score=0.964411;Name=No.93602,chr6:41366210" NA chr6 41306490 AGAxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 250 3 0 92.459686 0.6 0.02 1.311249 22 33 637 928 60 60 0 0 GG 48.10037 160 0 4526 0 KEEP + Try10 YES MNNG_1 chr6 41306801 41306801 C T intronic Try10 NA NA ncRNA_intronic Z12226 NA NA intronic ENSMUSG00000071521 NA NA 6qB1 "Score=0.964411;Name=No.93602,chr6:41366210" NA chr6 41306801 TTCxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 138 2 0 61.791681 0.378788 0.02 1.214972 41 25 1200 689 60 60 0 0 CC 14.741118 49 0 1414 0 KEEP + Try10 YES MNNG_1 chr6 41413316 41413316 G T exonic Prss1 nonsynonymous SNV NM_053243:c.G587T:p.C196F exonic Prss1 nonsynonymous SNV uc009boy.2:c.G587T:p.C196F exonic ENSMUSG00000062751 nonsynonymous SNV ENSMUST00000031910:c.G587T:p.C196F 6qB1 "Score=0.964411;Name=No.93602,chr6:41304715" NA chr6 41413316 CCTxCCA G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 88 1 10 46.336975 0.548387 0.02 -0.271844 14 17 399 475 60 60 0 0 GG 11.427877 38 0 1053 0 KEEP + Prss1 NO MNNG_1 chr6 41566073 41566073 G A exonic Ephb6 synonymous SNV NM_001146351:c.G1245A:p.G415G exonic Ephb6 synonymous SNV uc009bqa.2:c.G1245A:p.G415G exonic ENSMUSG00000029869 synonymous SNV ENSMUST00000031903:c.G1245A:p.G415G 6qB2.1 NA NA chr6 41566073 GGGxATG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 293 9 0 198.859137 0.532374 0.02 2.153999 65 74 1919 2053 60 60 0 0 GG 29.749066 99 0 2737 0 KEEP + Ephb6 YES MNNG_1 chr6 41626071 41626071 C T intronic Trpv5 NA NA intronic Trpv5 NA NA intronic ENSMUSG00000036899 NA NA 6qB2.1 NA NA chr6 41626071 TCTxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 130 0 0 41.497275 0.421053 0.02 -0.342021 22 16 651 451 60 60 0 0 CC 22.798699 76 0 2127 0 KEEP - Trpv5 YES MNNG_1 chr6 42306475 42306475 C T exonic Zyx synonymous SNV NM_011777:c.C1335T:p.D445D exonic Zyx synonymous SNV uc009bqy.1:c.C1242T:p.D414D exonic ENSMUSG00000029860 synonymous SNV ENSMUST00000031890:c.C1242T:p.D414D 6qB2.1 NA NA chr6 42306475 TGAxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 145 2 0 78.611635 0.405063 0.02 1.002913 47 32 1315 865 60 60 0 0 CC 14.133521 47 0 1272 0 KEEP + Zyx YES MNNG_1 chr6 42316049 42316049 G A exonic Epha1 synonymous SNV NM_023580:c.C564T:p.N188N exonic Epha1 synonymous SNV uc009brc.1:c.C564T:p.N188N exonic ENSMUSG00000029859 synonymous SNV ENSMUST00000073387:c.C564T:p.N188N 6qB2.1 NA NA chr6 42316049 CGGxTTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760782 0.760887 0.999863 60 0 0 58.215828 0.636364 0.02 -0.289374 12 21 345 576 60 60 0 0 GG 6.015282 20 0 549 0 KEEP - Epha1 YES MNNG_1 chr6 4708091 4708091 C T UTR3 Peg10 NA NA UTR3 Peg10 NA NA UTR3 ENSMUSG00000092035 NA NA 6qA1 NA NA chr6 4708091 CACxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 110 2 0 34.344579 0.419355 0.02 -0.271872 18 13 526 373 60 60 0 0 CC 19.545812 65 0 1793 0 KEEP + Peg10 YES MNNG_1 chr6 48405789 48405789 G A exonic Sspo nonsynonymous SNV NM_173428:c.G2599A:p.G867R exonic Sspo nonsynonymous SNV uc009buk.2:c.G2599A:p.G867R exonic ENSMUSG00000029797 nonsynonymous SNV ENSMUST00000043676:c.G2230A:p.G744R 6qB2.3 NA NA chr6 48405789 CCGxGAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 186 1 0 143.652682 0.625 0.02 1.083187 30 50 877 1428 60 60 0 0 GG 24.649101 82 0 2272 0 KEEP + Sspo YES MNNG_1 chr6 48407142 48407142 C T exonic Sspo nonsynonymous SNV NM_173428:c.C2881T:p.P961S exonic Sspo nonsynonymous SNV uc009buk.2:c.C2881T:p.P961S exonic ENSMUSG00000029797 nonsynonymous SNV ENSMUST00000043676:c.C2512T:p.P838S 6qB2.3 NA NA chr6 48407142 TGTxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 154 2 0 97.034666 0.413043 0.02 0.888432 54 38 1584 1060 60 60 0 0 CC 13.775274 46 0 1278 0 KEEP + Sspo YES MNNG_1 chr6 48413662 48413662 G A exonic Sspo nonsynonymous SNV NM_173428:c.G5210A:p.G1737D exonic Sspo nonsynonymous SNV uc009buk.2:c.G5210A:p.G1737D exonic ENSMUSG00000029797 nonsynonymous SNV ENSMUST00000043676:c.G4835A:p.G1612D 6qB2.3 NA NA chr6 48413662 CGGxCCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 130 2 0 102.014272 0.567164 0.02 1.099051 29 38 835 1038 60 60 0 0 GG 11.727983 39 0 1065 0 KEEP + Sspo YES MNNG_1 chr6 48570390 48570390 G A exonic Zfp775 nonsynonymous SNV NM_173429:c.G1198A:p.D400N exonic Zfp775 nonsynonymous SNV uc009bvc.1:c.G1198A:p.D400N exonic ENSMUSG00000007216 nonsynonymous SNV ENSMUST00000061720:c.G1198A:p.D400N 6qB2.3 NA NA chr6 48570390 CGGxATG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98794 0.987943 0.999997 104 0 0 84.631888 0.533333 0.02 1.169408 28 32 800 874 60 60 0 0 GG 9.324898 31 0 873 0 KEEP + Zfp775 YES MNNG_1 chr6 50515353 50515353 C T exonic Cycs synonymous SNV NM_007808:c.G201A:p.E67E exonic Cycs synonymous SNV uc009bxc.1:c.G201A:p.E67E exonic ENSMUSG00000063694 synonymous SNV ENSMUST00000161401:c.G201A:p.E67E 6qB2.3 "Score=0.99647;Name=No.73714,chr19:24950233" NA chr6 50515353 ATAxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 179 2 55 26.698719 0.3 0.02 -0.350236 28 12 808 316 60 60 0 0 CC 32.449997 108 0 3011 0 KEEP - Cycs YES MNNG_1 chr6 54565215 54565215 C T exonic Plekha8 nonsynonymous SNV NM_001001335:c.C29T:p.S10F exonic Plekha8 nonsynonymous SNV uc009cab.2:c.C164T:p.S55F exonic ENSMUSG00000005225 nonsynonymous SNV ENSMUST00000101385:c.C29T:p.S10F 6qB3 NA NA chr6 54565215 ATTxCGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 131 0 1 15.741268 0.21875 0.02 -0.280651 25 7 741 197 60 60 0 0 CC 22.548353 75 0 2104 0 KEEP + Plekha8 YES MNNG_1 chr6 57354487 57354487 C T exonic Vmn1r19 synonymous SNV NM_134182:c.C30T:p.I10I exonic Vmn1r19 synonymous SNV uc009ccf.1:c.C30T:p.I10I exonic ENSMUSG00000068426 synonymous SNV ENSMUST00000089830:c.C30T:p.I10I 6qB3 NA NA chr6 57354487 TATxCAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 59 0 0 10.023866 0.307692 0.02 -0.114011 9 4 261 116 60 60 0 0 CC 12.333446 41 0 1170 0 KEEP + Vmn1r19 YES MNNG_1 chr6 66986827 66986827 G A exonic Gadd45a nonsynonymous SNV NM_007836:c.C229T:p.L77F exonic Gadd45a nonsynonymous SNV uc009cfc.1:c.C229T:p.L77F exonic ENSMUSG00000036390 nonsynonymous SNV ENSMUST00000043098:c.C229T:p.L77F 6qC1 NA NA chr6 66986827 TGAxGGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 138 0 0 98.72419 0.521739 0.02 1.179645 33 36 964 1023 60 60 0 0 GG 17.14474 57 0 1617 0 KEEP - Gadd45a YES MNNG_1 chr6 68252976 68252976 G A intergenic "4930515G16Rik(dist=737283),Rprl1(dist=1023955)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076521 synonymous SNV ENSMUST00000103322:c.G186A:p.L62L 6qC1 NA NA chr6 68252976 TCTxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 144 1 0 50.065934 0.59375 0.02 -0.280583 13 19 381 504 60 60 0 0 GG 27.374095 91 0 2584 0 KEEP + 4930515G16Rik YES MNNG_1 chr6 71543920 71543920 G A exonic Kdm3a nonsynonymous SNV NM_173001:c.C3268T:p.P1090S exonic Kdm3a nonsynonymous SNV uc009cgy.2:c.C3268T:p.P1090S exonic ENSMUSG00000053470 nonsynonymous SNV ENSMUST00000101304:c.C1792T:p.P598S 6qC1 NA NA chr6 71543920 TTGxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 63 0 0 19.281253 0.4 0.02 -0.174946 12 8 332 213 60 60 0 0 GG 9.323707 31 0 860 0 KEEP - Kdm3a YES MNNG_1 chr6 71561808 71561808 G A exonic Kdm3a synonymous SNV NM_173001:c.C1210T:p.L404L exonic Kdm3a synonymous SNV uc009chb.1:c.C355T:p.L119L exonic ENSMUSG00000053470 synonymous SNV ENSMUST00000167220:c.C1210T:p.L404L 6qC1 NA NA chr6 71561808 CCAxTCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 81 1 0 59.938617 0.594595 0.02 -0.324445 15 22 425 603 60 60 0 0 GG 11.111138 37 0 997 0 KEEP - Kdm3a YES MNNG_1 chr6 72798438 72798438 G A exonic Kcmf1 nonsynonymous SNV NM_019715:c.C665T:p.P222L exonic Kcmf1 nonsynonymous SNV uc009cjd.1:c.C665T:p.P222L exonic ENSMUSG00000055239 nonsynonymous SNV ENSMUST00000068697:c.C665T:p.P222L 6qC1 NA NA chr6 72798438 GAAxGGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.918168 0.918171 0.999997 98 0 0 51.436488 0.465116 0.02 -0.385215 23 20 647 548 60 60 0 0 GG 13.820328 46 0 1272 0 KEEP - Kcmf1 YES MNNG_1 chr6 82021189 82021189 G A exonic Eva1a nonsynonymous SNV NM_145570:c.G53A:p.G18E exonic Fam176a nonsynonymous SNV uc009clg.2:c.G53A:p.G18E exonic ENSMUSG00000035104 nonsynonymous SNV ENSMUST00000042974:c.G53A:p.G18E 6qC3 NA NA chr6 82021189 TGGxAAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 253 2 0 181.747553 0.554622 0.02 2.320589 53 66 1581 1858 60 60 0 0 GG 26.16024 87 0 2445 0 KEEP + Eva1a YES MNNG_1 chr6 82863669 82863669 G A exonic Sema4f nonsynonymous SNV NM_011350:c.C2150T:p.T717I exonic Sema4f nonsynonymous SNV uc012enu.1:c.C1442T:p.T481I exonic ENSMUSG00000000627 nonsynonymous SNV ENSMUST00000000641:c.C2150T:p.T717I 6qC3 NA NA chr6 82863669 CTTxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 132 2 0 116.265375 0.576923 0.02 0.816136 33 45 940 1179 60 60 0 0 GG 11.728806 39 0 1075 0 KEEP - Sema4f YES MNNG_1 chr6 82931991 82931991 G A intronic M1ap NA NA intronic D6Mm5e NA NA intronic ENSMUSG00000030041 NA NA 6qC3 NA NA chr6 82931991 CTTxTTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.227586 0.229173 0.993072 30 0 0 31.063706 0.733333 0.02 -0.131525 4 11 117 296 60 60 0 0 GG 3.292841 11 0 284 0 KEEP + M1ap YES MNNG_1 chr6 83603068 83603068 C T exonic Clec4f synonymous SNV NM_016751:c.G501A:p.E167E exonic Clec4f synonymous SNV uc009cnv.1:c.G501A:p.E167E exonic ENSMUSG00000014542 synonymous SNV ENSMUST00000014686:c.G501A:p.E167E 6qC3 NA NA chr6 83603068 GGTxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 147 6 0 59.56946 0.470588 0.02 1.239984 27 24 792 635 60 60 0 0 CC 24.066547 80 0 2297 0 KEEP - Clec4f YES MNNG_1 chr6 85298058 85298058 C T exonic Rab11fip5 synonymous SNV NM_001003955:c.G1260A:p.E420E exonic Rab11fip5 synonymous SNV uc009cpn.1:c.G1260A:p.E420E exonic ENSMUSG00000051343 synonymous SNV ENSMUST00000060837:c.G1260A:p.E420E 6qC3 NA NA chr6 85298058 CCCxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 144 0 0 52.028725 0.271605 0.02 1.083351 59 22 1702 621 60 60 0 0 CC 14.738697 49 0 1371 0 KEEP - Rab11fip5 YES MNNG_1 chr6 87954294 87954294 C T splicing Rab7(NM_009005:exon5:c.400-1G>A) NA NA splicing "Rab7(uc009cuv.1:exon5:c.400-1G>A,uc009cuw.1:exon7:c.400-1G>A,uc009cux.1:exon6:c.400-1G>A,uc009cuy.1:exon8:c.400-1G>A,uc009cuz.1:exon6:c.400-1G>A)" NA NA splicing "ENSMUSG00000079477(ENSMUST00000113600:exon6:c.400-1G>A,ENSMUST00000113598:exon6:c.400-1G>A,ENSMUST00000113597:exon7:c.400-1G>A,ENSMUST00000113596:exon8:c.400-1G>A,ENSMUST00000095048:exon6:c.400-1G>A)" NA NA 6qD1 NA NA chr6 87954294 CACxTAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 144 0 0 66.132361 0.416667 0.02 1.267497 35 25 1003 719 60 60 0 0 CC 18.037114 60 0 1676 0 KEEP - Rab7 YES MNNG_1 chr6 90514516 90514516 C T intronic Aldh1l1 NA NA intronic Aldh1l1 NA NA intronic ENSMUSG00000030088 NA NA 6qD1 NA NA chr6 90514516 GTTxAAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 37 1 0 30.362815 0.733333 0.02 -0.140277 4 11 113 289 60 60 1 0 CC 6.31772 21 0 609 0 KEEP + Aldh1l1 YES MNNG_1 chr6 91712562 91712562 C T UTR3 Grip2 NA NA UTR3 Grip2 NA NA UTR3 ENSMUSG00000030098 NA NA 6qD1 NA NA chr6 91712562 TGTxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999997 92 1 0 78.068629 0.54717 0.02 1.22175 24 29 693 801 60 60 0 0 CC 9.325618 31 0 886 0 KEEP - Grip2 YES MNNG_1 chr6 92109407 92109407 C T intronic Nr2c2 NA NA ncRNA_intronic mKIAA4145 NA NA intronic ENSMUSG00000005893 NA NA 6qD1 NA NA chr6 92109407 TATxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.25975 0.260965 0.995343 35 0 0 15.17013 0.375 0.02 -0.140144 10 6 270 169 60 60 0 0 CC 4.211717 14 0 404 0 KEEP + Nr2c2 YES MNNG_1 chr7 10632987 10632987 G A exonic Vmn2r50 synonymous SNV NM_001105178:c.C1227T:p.L409L exonic Vmn2r50 synonymous SNV uc012eyo.1:c.C1227T:p.L409L exonic ENSMUSG00000061026 synonymous SNV ENSMUST00000086298:c.C1179T:p.L393L 7qA1 "Score=0.983207;Name=No.97940,chr7:9836293" NA chr7 10632987 ATGxAGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 999 1 322 25.312578 0.16 0.02 1.037463 63 12 1847 339 36 29 0 0 GG 218.60658 727 0 20607 0 KEEP - Vmn2r50 YES MNNG_1 chr7 107909666 107909666 T A intronic Fam168a NA NA intronic Fam168a NA NA exonic ENSMUSG00000078636 nonsynonymous SNV ENSMUST00000107041:c.A655T:p.I219F 7qE3 "Score=0.988959;Name=No.102201,chr8:95239632" NA chr7 107909666 GGAxGAC T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 497 22 52 137.939524 0.381944 0.02 2.28951 89 55 2443 1533 60 60 0 0 TT 77.56199 258 0 6915 0 KEEP + Fam168a NO MNNG_1 chr7 108652910 108652910 G A exonic Pde2a synonymous SNV NM_001143849:c.G1269A:p.L423L exonic Pde2a synonymous SNV uc009iot.2:c.G1269A:p.L423L exonic ENSMUSG00000030653 synonymous SNV ENSMUST00000032889:c.G1233A:p.L411L 7qE3 NA NA chr7 108652910 GCTxGAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 140 4 0 74.685755 0.434783 0.02 1.170937 39 30 1151 809 60 60 0 0 GG 14.138815 47 0 1344 0 KEEP + Pde2a YES MNNG_1 chr7 109047542 109047542 G A exonic Anapc15 synonymous SNV NM_027532:c.G342A:p.E114E exonic 3200002M19Rik synonymous SNV uc009ipt.1:c.G342A:p.E114E exonic ENSMUSG00000030649 synonymous SNV ENSMUST00000168375:c.G309A:p.E103E 7qE3 NA NA chr7 109047542 AGAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 196 0 0 86.898946 0.392857 0.02 1.048058 51 33 1501 956 60 60 0 0 GG 24.666109 82 0 2319 0 KEEP + Anapc15 YES MNNG_1 chr7 110335420 110335420 G A exonic Olfr592 nonsynonymous SNV NM_207556:c.G304A:p.A102T exonic Olfr592 nonsynonymous SNV uc009ith.1:c.G304A:p.A102T exonic ENSMUSG00000073956 nonsynonymous SNV ENSMUST00000098207:c.G304A:p.A102T 7qE3 NA NA chr7 110335420 GTGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 60 0 0 12.930115 0.26087 0.02 -0.210406 17 6 491 158 60 60 0 0 GG 9.926156 33 0 921 0 KEEP + Olfr592 YES MNNG_1 chr7 110368300 110368300 G A exonic Olfr594 nonsynonymous SNV NM_207143:c.G67A:p.E23K exonic Olfr594 nonsynonymous SNV uc009itj.1:c.G67A:p.E23K exonic ENSMUSG00000073954 nonsynonymous SNV ENSMUST00000098205:c.G67A:p.E23K 7qE3 NA NA chr7 110368300 CTAxAGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 83 0 0 17.734489 0.333333 0.02 -0.184181 14 7 416 202 60 60 0 0 GG 14.741387 49 0 1419 0 KEEP + Olfr594 YES MNNG_1 chr7 111055046 111055046 C T exonic Olfr65 nonsynonymous SNV NM_013616:c.C92T:p.P31L exonic Olfr65 nonsynonymous SNV uc012fre.1:c.C92T:p.P31L exonic ENSMUSG00000047163 nonsynonymous SNV ENSMUST00000106864:c.C92T:p.P31L 7qE3 NA NA chr7 111055046 TCCxATT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 139 0 0 25.060967 0.261905 0.02 -0.36832 31 11 906 303 60 60 0 0 CC 24.065252 80 0 2270 0 KEEP + Olfr65 YES MNNG_1 chr7 112305021 112305021 G A downstream Olfr684 NA NA downstream Olfr684 NA NA downstream ENSMUSG00000047225 NA NA 7qE3 NA NA chr7 112305021 GCAxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 47 0 0 14.19919 0.555556 0.02 -0.078934 4 5 120 145 60 60 0 0 GG 9.626754 32 0 922 0 KEEP NA Olfr684 YES MNNG_1 chr7 112561338 112561338 G A intergenic "Cnga4(dist=4086),Cckbr(dist=12996)" NA NA intergenic "Cnga4(dist=4086),Cckbr(dist=12996)" NA NA intergenic "ENSMUSG00000030897(dist=4086),ENSMUSG00000030898(dist=12993)" NA NA 7qE3 NA NA chr7 112561338 CTGxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 92 0 0 31.867365 0.631579 0.02 -0.166425 7 12 208 316 60 60 0 0 GG 18.901292 63 0 1698 0 KEEP NA Cnga4 YES MNNG_1 chr7 114897459 114897459 G A exonic Cyb5r2 nonsynonymous SNV NM_001205227:c.C289T:p.P97S exonic Cyb5r2 nonsynonymous SNV uc009jbi.1:c.C289T:p.P97S exonic ENSMUSG00000048065 nonsynonymous SNV ENSMUST00000052438:c.C289T:p.P97S 7qE3 NA NA chr7 114897459 CAGxATA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 161 0 0 61.510957 0.4 0.02 1.169071 36 24 1035 676 60 60 0 0 GG 27.372934 91 0 2584 0 KEEP - Cyb5r2 YES MNNG_1 chr7 115315922 115315922 G A exonic Olfr486 nonsynonymous SNV NM_146496:c.C335T:p.A112V exonic Olfr486 nonsynonymous SNV uc009jcb.1:c.C335T:p.A112V exonic ENSMUSG00000063610 nonsynonymous SNV ENSMUST00000072035:c.C335T:p.A112V 7qE3 "Score=0.963757;Name=No.101615,chr7:115354773" NA chr7 115315922 ACAxCCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 177 1 53 19.347705 0.307692 0.02 -0.228002 18 8 515 225 36 36 0 0 GG 39.706586 132 0 3733 0 KEEP - Olfr486 YES MNNG_1 chr7 115708431 115708431 G A exonic Olfr504 nonsynonymous SNV NM_001011858:c.C877T:p.P293S exonic Olfr504 nonsynonymous SNV uc009jco.1:c.C877T:p.P293S exonic ENSMUSG00000060105 nonsynonymous SNV ENSMUST00000075595:c.C877T:p.P293S 7qE3 "Score=0.941164;Name=No.101575,chr7:111782411" NA chr7 115708431 TAGxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 112 0 0 19.910811 0.32 0.02 -0.228025 17 8 498 229 60 60 0 0 GG 23.149308 77 0 2142 0 KEEP - Olfr504 YES MNNG_1 chr7 117122256 117122256 G A exonic Tmem41b synonymous SNV NM_153525:c.C535T:p.L179L exonic Tmem41b synonymous SNV uc009jeo.1:c.C280T:p.L94L exonic ENSMUSG00000047554 synonymous SNV ENSMUST00000094097:c.C535T:p.L179L 7qF1 NA NA chr7 117122256 TTAxGTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.490544 0.490544 1 152 2 0 11.357427 0.217391 0.02 -0.201694 18 5 525 142 60 60 0 0 GG 28.277731 94 0 2692 0 KEEP - Tmem41b YES MNNG_1 chr7 119523837 119523837 G A exonic Micalcl synonymous SNV NM_027587:c.G30A:p.K10K exonic Micalcl synonymous SNV uc012fsg.1:c.G30A:p.K10K exonic ENSMUSG00000030771 synonymous SNV ENSMUST00000033033:c.G228A:p.K76K 7qF1 NA NA chr7 119523837 AAAxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 110 0 0 55.773553 0.512195 0.02 -0.359533 20 21 589 581 60 60 0 0 GG 15.330988 51 0 1421 0 KEEP + Micalcl YES MNNG_1 chr7 12197877 12197877 G A intergenic "Zscan4f(dist=210210),Vmn1r72(dist=57071)" NA NA intergenic "Zscan4f(dist=93840),Vmn1r72(dist=57071)" NA NA intergenic "ENSMUSG00000070826(dist=93417),ENSMUSG00000092489(dist=40602)" NA NA 7qA1 "Score=0.953018;Name=No.98149,chr7:11891717" NA chr7 12197877 GAGxGGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 194 0 0 83.578731 0.674419 0.02 -0.376642 14 29 386 815 60 60 0 0 GG 38.46572 131 1 3631 8 KEEP NA Zscan4f YES MNNG_1 chr7 12341963 12341963 C T exonic Vmn1r73 nonsynonymous SNV NM_134203:c.C358T:p.L120F exonic Vmn1r73 nonsynonymous SNV uc009fdq.1:c.C358T:p.L120F exonic ENSMUSG00000051687 nonsynonymous SNV ENSMUST00000055070:c.C358T:p.L120F 7qA1 NA NA chr7 12341963 ACAxTTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 64 0 0 9.190632 0.333333 0.02 -0.105231 8 4 235 106 60 60 0 0 CC 12.632856 42 0 1169 0 KEEP + Vmn1r73 YES MNNG_1 chr7 125803124 125803124 C T exonic Tmc5 synonymous SNV NM_028930:c.C1596T:p.I532I exonic Tmc5 synonymous SNV uc009jkg.2:c.C1596T:p.I532I exonic ENSMUSG00000030650 synonymous SNV ENSMUST00000057320:c.C1596T:p.I532I 7qF2 NA NA chr7 125803124 GATxTAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120425 0.120436 0.999909 40 0 0 7.443379 0.333333 0.02 -0.096467 6 3 174 85 60 60 0 0 CC 7.219964 24 0 690 0 KEEP + Tmc5 YES MNNG_1 chr7 125869633 125869633 C A exonic Ccp110 synonymous SNV NM_182995:c.C2320A:p.R774R exonic "6330503K22Rik,Cep110" synonymous SNV uc009jkk.1:c.C1651A:p.R551R exonic ENSMUSG00000033904 synonymous SNV ENSMUST00000038650:c.C2320A:p.R774R 7qF2 NA NA chr7 125869633 GGAxGGG C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 55 2 0 31.534798 0.578947 0.02 -0.175322 8 11 187 319 60 60 0 0 CC 9.008258 30 0 699 0 KEEP + Ccp110 NO MNNG_1 chr7 13167747 13167747 G A exonic Vmn2r53 nonsynonymous SNV NM_001104644:c.C1493T:p.T498I exonic Vmn2r53 nonsynonymous SNV uc009ved.1:c.C1493T:p.T498I exonic ENSMUSG00000091797 nonsynonymous SNV ENSMUST00000170412:c.C1493T:p.T498I 7qA1 "Score=0.921875;Name=No.98179,chr7:13200545" NA chr7 13167747 CTGxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 203 2 1 77.644411 0.402597 0.02 0.967402 46 31 1311 854 60 60 0 0 GG 28.872306 96 0 2640 0 KEEP - Vmn2r53 YES MNNG_1 chr7 133992217 133992217 G A exonic Doc2a nonsynonymous SNV NM_010069:c.G118A:p.G40R exonic Doc2a nonsynonymous SNV uc009jtb.1:c.G118A:p.G40R exonic ENSMUSG00000052301 nonsynonymous SNV ENSMUST00000137873:c.G118A:p.G40R 7qF3 NA NA chr7 133992217 AGGxGGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 98 2 0 50.665721 0.463415 0.02 -0.368301 22 19 631 539 60 60 0 0 GG 12.568184 42 0 1122 0 KEEP + Doc2a YES MNNG_1 chr7 134136347 134136347 G A intronic Mvp NA NA intronic Mvp NA NA intronic ENSMUSG00000030681 NA NA 7qF3 NA NA chr7 134136347 GGAxAAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994419 0.994422 0.999997 105 2 0 68.515378 0.415385 0.02 1.116435 38 27 1122 748 60 60 0 0 GG 9.024568 30 0 854 0 KEEP - Mvp YES MNNG_1 chr7 134337519 134337519 G A intronic Cd2bp2 NA NA intronic Cd2bp2 NA NA intronic ENSMUSG00000042502 NA NA 7qF3 NA NA chr7 134337519 GGGxGCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 271 2 0 127.850052 0.42735 0.02 2.544114 67 50 1924 1387 60 60 0 0 GG 37.256851 124 0 3369 0 KEEP - Cd2bp2 YES MNNG_1 chr7 134548458 134548458 G A exonic Zfp764 synonymous SNV NM_146203:c.C1014T:p.R338R exonic Zfp764 synonymous SNV uc009jvi.1:c.C1014T:p.R338R exonic ENSMUSG00000045757 synonymous SNV ENSMUST00000059199:c.C1014T:p.R338R 7qF3 "Score=0.924262;Name=No.101631,chr7:134526122" NA chr7 134548458 GTGxCGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 101 1 0 21.346945 0.3 0.02 -0.262538 21 9 585 250 60 60 0 0 GG 18.347395 61 0 1689 0 KEEP - Zfp764 YES MNNG_1 chr7 134696821 134696821 G A intergenic "Snora30(dist=25304),Phkg2(dist=20041)" NA NA intergenic "Srcap(dist=16931),BC048731(dist=7941)" NA NA intergenic "ENSMUSG00000053877(dist=16931),ENSMUSG00000090663(dist=6079)" NA NA 7qF3 NA NA chr7 134696821 GAGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 36 0 0 12.138975 0.333333 0.02 -0.131538 10 5 283 139 60 60 0 0 GG 5.408066 18 0 481 0 KEEP + Snora30 YES MNNG_1 chr7 134754909 134754909 G A exonic Zfp629 nonsynonymous SNV NM_177226:c.C1241T:p.S414F exonic Zfp629 nonsynonymous SNV uc009jwh.1:c.C1241T:p.S414F exonic ENSMUSG00000045639 nonsynonymous SNV ENSMUST00000058038:c.C1241T:p.S414F 7qF3 NA NA chr7 134754909 TTAxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 103 1 0 48.521879 0.377358 0.02 1.231887 33 20 961 543 60 60 0 0 GG 12.618261 42 0 1176 0 KEEP - Zfp629 YES MNNG_1 chr7 135123411 135123411 G A exonic Fus nonsynonymous SNV NM_139149:c.G1051A:p.E351K exonic Fus nonsynonymous SNV uc009jxo.1:c.G1051A:p.E351K exonic ENSMUSG00000030795 nonsynonymous SNV ENSMUST00000077609:c.G1048A:p.E350K 7qF3 NA NA chr7 135123411 AAAxAAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 98 0 0 23.764327 0.428571 0.02 -0.184173 12 9 353 257 60 60 0 0 GG 18.048984 60 0 1710 0 KEEP + Fus YES MNNG_1 chr7 13592507 13592507 G A exonic Zbtb45 nonsynonymous SNV NM_001024699:c.C1172T:p.A391V exonic Zbtb45 nonsynonymous SNV uc009fez.1:c.C1172T:p.A391V exonic ENSMUSG00000049600 nonsynonymous SNV ENSMUST00000051390:c.C1172T:p.A391V 7qA1 NA NA chr7 13592507 GTGxCCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.797437 0.800245 0.99649 60 2 0 34.851357 0.4375 0.02 -0.306882 18 14 518 377 60 60 0 0 GG 4.481965 15 0 378 0 KEEP - Zbtb45 YES MNNG_1 chr7 137648182 137648182 G A intronic Ate1 NA NA intronic Ate1 NA NA intronic "ENSMUSG00000030849,ENSMUSG00000030850" NA NA 7qF3 NA NA chr7 137648182 CCAxCGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 74 2 0 29.22625 0.375 0.02 -0.280588 20 12 590 327 60 60 0 0 GG 9.024316 30 0 853 0 KEEP - Ate1 YES MNNG_1 chr7 138332309 138332309 G A intronic 5430419D17Rik NA NA intronic 5430419D17Rik NA NA intronic "ENSMUSG00000006204,ENSMUSG00000030849" NA NA 7qF3 NA NA chr7 138332309 ATGxCGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 70 0 0 24.662159 0.4 0.02 -0.219223 15 10 427 272 60 60 0 0 GG 10.527324 35 0 970 0 KEEP + 5430419D17Rik YES MNNG_1 chr7 142310593 142310593 G A exonic Dock1 stopgain SNV NM_001033420:c.G3747A:p.W1249X exonic Dock1 stopgain SNV uc009kdx.1:c.G1404A:p.W468X exonic ENSMUSG00000058325 stopgain SNV ENSMUST00000084488:c.G3747A:p.W1249X 7qF3 NA NA chr7 142310593 GTGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 42 0 0 12.469993 0.3125 0.02 -0.140323 11 5 322 144 60 60 0 0 GG 6.270168 21 0 556 0 KEEP + Dock1 YES MNNG_1 chr7 142344008 142344008 G A exonic Dock1 synonymous SNV NM_001033420:c.G4830A:p.K1610K exonic Dock1 synonymous SNV uc009kdx.1:c.G2487A:p.K829K exonic ENSMUSG00000058325 synonymous SNV ENSMUST00000084488:c.G4830A:p.K1610K 7qF3 NA NA chr7 142344008 AAAxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 101 0 0 18.130393 0.258065 0.02 -0.271862 23 8 677 220 60 60 0 0 GG 16.845542 56 0 1589 0 KEEP + Dock1 YES MNNG_1 chr7 146285729 146285729 G A exonic Dpysl4 nonsynonymous SNV NM_011993:c.G1552A:p.A518T exonic Dpysl4 nonsynonymous SNV uc009kfk.2:c.G1615A:p.A539T exonic ENSMUSG00000025478 nonsynonymous SNV ENSMUST00000121184:c.G1615A:p.A539T 7qF4 NA NA chr7 146285729 CAGxCCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 175 0 0 84.410983 0.382022 0.02 0.90609 55 34 1596 939 60 60 0 0 GG 16.778832 56 0 1529 0 KEEP + Dpysl4 YES MNNG_1 chr7 147409435 147409435 G A intronic Cd163l1 NA NA intronic Cd163l1 NA NA intronic ENSMUSG00000025461 NA NA 7qF4 NA NA chr7 147409435 CGTxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899188 0.899314 0.99986 62 0 0 30.064055 0.333333 0.02 -0.36814 28 14 786 350 60 60 0 0 GG 5.71275 19 0 510 0 KEEP + Cd163l1 YES MNNG_1 chr7 148829216 148829216 G A intronic Muc6 NA NA intronic Muc6 NA NA intronic ENSMUSG00000048191 NA NA 7qF5 NA NA chr7 148829216 GTGxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865708 0.865745 0.999957 73 0 0 41.097998 0.421053 0.02 -0.342009 22 16 634 447 60 60 0 0 GG 7.797628 26 0 688 0 KEEP - Muc6 YES MNNG_1 chr7 148989409 148989409 G A intronic Muc5ac NA NA intronic Muc5ac NA NA intronic ENSMUSG00000037974 NA NA 7qF5 NA NA chr7 148989409 TGGxGCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 186 0 0 97.474973 0.372549 0.02 2.666383 64 38 1837 1086 60 60 0 0 GG 16.842309 56 0 1538 0 KEEP + Muc5ac YES MNNG_1 chr7 149360936 149360936 G A exonic Krtap5-2 nonsynonymous SNV NM_027844:c.C911T:p.S304F exonic Krtap5-2 nonsynonymous SNV uc012fxi.1:c.C377T:p.S126F exonic ENSMUSG00000054759 nonsynonymous SNV ENSMUST00000067978:c.C377T:p.S126F 7qF5 "Score=0.957631;Name=No.101652,chr7:149349971" NA chr7 149360936 CAGxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490523 0.490544 0.999957 58 2 0 14.916787 0.315789 0.02 -0.201695 13 6 375 172 60 60 0 0 GG 6.657465 25 1 657 7 KEEP - Krtap5-2 YES MNNG_1 chr7 149658252 149658252 C A exonic Lsp1 synonymous SNV NM_001271508:c.C45A:p.G15G exonic Lsp1 synonymous SNV uc009kne.1:c.C45A:p.G15G exonic ENSMUSG00000018819 synonymous SNV ENSMUST00000038946:c.C45A:p.G15G 7qF5 NA NA chr7 149658252 GGGxCTG C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963657 0.963774 0.999879 83 0 0 74.142947 0.56 0.02 1.24808 22 28 649 757 60 60 0 0 CC 6.616541 22 0 608 0 KEEP + Lsp1 NO MNNG_1 chr7 150710568 150710568 G A intronic Nap1l4 NA NA intronic Nap1l4 NA NA intronic ENSMUSG00000059119 NA NA 7qF5 NA NA chr7 150710568 ACAxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099717 0.099721 0.999957 41 0 0 28.67839 0.9 0.02 -0.0877 1 9 30 258 60 60 0 0 GG 7.821624 26 0 748 0 KEEP - Nap1l4 YES MNNG_1 chr7 16573224 16573224 G C exonic Gltscr1 nonsynonymous SNV NM_001081418:c.C1716G:p.S572R exonic Gltscr1 nonsynonymous SNV uc009fgu.1:c.C1716G:p.S572R exonic ENSMUSG00000070808 nonsynonymous SNV ENSMUST00000094821:c.C1716G:p.S572R 7qA2 NA NA chr7 16573224 CTGxCTC G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 1 0.999999 205 0 0 55.973479 0.183824 0.02 2.38699 111 25 3170 722 60 60 0 0 GG 10.827006 36 0 986 0 KEEP - Gltscr1 NO MNNG_1 chr7 16800815 16800815 G A exonic Dhx34 nonsynonymous SNV NM_027883:c.C1036T:p.P346S exonic Dhx34 nonsynonymous SNV uc009fhh.1:c.C1036T:p.P346S exonic ENSMUSG00000006019 nonsynonymous SNV ENSMUST00000094816:c.C1036T:p.P346S 7qA2 NA NA chr7 16800815 GCGxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.738068 0.739671 0.997832 59 0 0 20.638449 0.28125 0.02 -0.280595 23 9 652 246 60 60 0 0 GG 4.807969 16 0 430 0 KEEP - Dhx34 YES MNNG_1 chr7 16861942 16861942 G A exonic Ccdc9 nonsynonymous SNV NM_172297:c.C983T:p.T328I exonic Ccdc9 nonsynonymous SNV uc009fhn.1:c.C983T:p.T328I exonic ENSMUSG00000041375 nonsynonymous SNV ENSMUST00000041010:c.C983T:p.T328I 7qA2 NA NA chr7 16861942 AAAxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 118 0 0 42.560011 0.333333 0.02 1.221729 36 18 1006 489 60 60 0 0 GG 15.339887 51 0 1422 0 KEEP - Ccdc9 YES MNNG_1 chr7 17084554 17084554 G A intronic Grlf1 NA NA intronic Grlf1 NA NA intronic ENSMUSG00000058230 NA NA 7qA2 NA NA chr7 17084554 ATTxCCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 98 6 13 95.591915 0.96875 0.02 -0.358892 1 31 8 823 17 60 0 0 GG 14.135039 47 0 1278 0 KEEP - Grlf1 YES MNNG_1 chr7 17147868 17147868 G A exonic Grlf1 nonsynonymous SNV NM_172739:c.C2620T:p.L874F exonic Grlf1 nonsynonymous SNV uc009fhw.1:c.C2620T:p.L874F exonic ENSMUSG00000058230 nonsynonymous SNV ENSMUST00000075845:c.C2620T:p.L874F 7qA2 NA NA chr7 17147868 AAAxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 86 1 0 19.491532 0.296296 0.02 -0.236795 19 8 558 228 60 60 0 0 GG 13.838872 46 0 1333 0 KEEP - Grlf1 YES MNNG_1 chr7 17416429 17416429 G A exonic Strn4 synonymous SNV NM_001039878:c.G1095A:p.G365G exonic Strn4 synonymous SNV uc009fie.2:c.G1095A:p.G365G exonic ENSMUSG00000030374 synonymous SNV ENSMUST00000019220:c.G1095A:p.G365G 7qA2 NA NA chr7 17416429 TGGxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 4 0 115.741768 0.355556 0.02 2.18059 87 48 2510 1310 60 60 0 0 GG 33.589755 112 0 2977 0 KEEP + Strn4 YES MNNG_1 chr7 19146006 19146006 A C exonic Psg27 nonsynonymous SNV NM_001037168:c.T824G:p.L275R exonic Psg27 nonsynonymous SNV uc009fjn.1:c.T824G:p.L275R exonic ENSMUSG00000070797 nonsynonymous SNV ENSMUST00000094794:c.T824G:p.L275R 7qA3 NA NA chr7 19146006 CTGxGTT A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 152 0 0 15.262331 0.318182 0.02 -0.1929 15 7 430 179 60 60 0 0 AA 31.557439 105 0 2908 0 KEEP - Psg27 NO MNNG_1 chr7 20166525 20166525 G A intronic Clasrp NA NA ncRNA_intronic ClaspL NA NA intronic ENSMUSG00000061028 NA NA 7qA3 NA NA chr7 20166525 AAGxCTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.454419 0.457757 0.992708 32 0 0 19.783899 0.4 0.02 -0.192483 12 8 288 218 60 60 0 0 GG 3.006507 10 0 266 0 KEEP - Clasrp YES MNNG_1 chr7 20221216 20221216 G A intronic Clptm1 NA NA intronic Clptm1 NA NA intronic ENSMUSG00000002981 NA NA 7qA3 NA NA chr7 20221216 TGGxCAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098994 0.099721 0.992708 22 0 1 6.943063 0.333333 0.02 -0.087692 6 3 174 80 60 60 0 0 GG 3.308659 11 0 306 0 KEEP - Clptm1 YES MNNG_1 chr7 20686780 20686780 G A exonic Vmn1r91 nonsynonymous SNV NM_001166736:c.G274A:p.E92K exonic Vmn1r91 nonsynonymous SNV uc012fbo.1:c.G274A:p.E92K exonic ENSMUSG00000090393 nonsynonymous SNV ENSMUST00000165330:c.G274A:p.E92K 7qA3 "Score=0.999217;Name=No.98837,chr7:22865204" NA chr7 20686780 TTAxAAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 340 3 76 42.399534 0.421053 0.02 -0.342025 22 16 636 460 52 53 0 0 GG 78.517434 261 0 7513 0 KEEP + Vmn1r91 YES MNNG_1 chr7 24106708 24106708 G A exonic Nlrp4e nonsynonymous SNV NM_001004194:c.G1600A:p.E534K exonic Nlrp4e nonsynonymous SNV uc009fod.2:c.G1600A:p.E534K exonic ENSMUSG00000045693 nonsynonymous SNV ENSMUST00000076470:c.G1600A:p.E534K 7qA3 "Score=0.975406;Name=No.100189,chr7:23306338" NA chr7 24106708 CTGxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 903 6 5 96.275031 0.314516 0.02 2.302923 85 39 2526 1112 60 60 0 0 GG 187.936585 625 0 17649 0 KEEP + Nlrp4e YES MNNG_1 chr7 24143516 24143516 G A intronic Nlrp4e NA NA intronic Nlrp4e NA NA intronic ENSMUSG00000045693 NA NA 7qA3 NA NA chr7 24143516 GCCxCAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138942 0.139832 0.993634 26 0 0 9.577133 0.363636 0.02 -0.105198 7 4 182 108 60 60 0 0 GG 3.523762 12 0 261 0 KEEP + Nlrp4e YES MNNG_1 chr7 24870535 24870535 G A intronic Zfp180 NA NA intronic Zfp180 NA NA intronic ENSMUSG00000057101 NA NA 7qA3 NA NA chr7 24870535 GAAxCCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.384582 0.387407 0.992708 37 0 0 14.257097 0.3 0.02 -0.175389 14 6 403 167 60 60 0 0 GG 3.007696 10 0 276 0 KEEP + Zfp180 YES MNNG_1 chr7 25162688 25162688 G C exonic Kcnn4 nonsynonymous SNV NM_001163510:c.G642C:p.W214C exonic Kcnn4 nonsynonymous SNV uc009fpk.2:c.G642C:p.W214C exonic ENSMUSG00000054342 nonsynonymous SNV ENSMUST00000067352:c.G642C:p.W214C 7qA3 NA NA chr7 25162688 CTGxCTC G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.847205 0.851984 0.994391 62 1 0 10.264988 0.131579 0.02 -0.333186 33 5 936 143 60 60 0 0 GG 3.910038 13 0 361 0 KEEP + Kcnn4 NO MNNG_1 chr7 25319492 25319492 G A exonic Irgq nonsynonymous SNV NM_153134:c.G1738A:p.E580K exonic Irgq nonsynonymous SNV uc012ffl.1:c.G1738A:p.E580K exonic ENSMUSG00000041037 nonsynonymous SNV ENSMUST00000049020:c.G1738A:p.E580K 7qA3 NA NA chr7 25319492 CCAxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 127 0 0 68.499852 0.380282 0.02 1.063849 44 27 1280 761 60 60 0 0 GG 13.234971 44 0 1241 0 KEEP + Irgq YES MNNG_1 chr7 25763531 25763531 G A UTR3 Atp1a3 NA NA UTR3 Atp1a3 NA NA UTR3 ENSMUSG00000040907 NA NA 7qA3 NA NA chr7 25763531 GGGxTAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 178 2 0 83.88204 0.419753 0.02 0.958761 47 34 1345 916 60 60 0 0 GG 21.050696 70 0 1901 0 KEEP - Atp1a3 YES MNNG_1 chr7 26153022 26153022 G A exonic Cnfn nonsynonymous SNV NM_001081375:c.C209T:p.S70F exonic Cnfn nonsynonymous SNV uc009fsl.1:c.C209T:p.S70F exonic ENSMUSG00000063651 nonsynonymous SNV ENSMUST00000076276:c.C209T:p.S70F 7qA3 NA NA chr7 26153022 AGAxAGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 96 0 0 18.503248 0.25 0.02 -0.289408 24 8 710 225 60 60 0 0 GG 15.040336 50 0 1421 0 KEEP - Cnfn YES MNNG_1 chr7 26168535 26168535 G A exonic Lipe synonymous SNV NM_001039507:c.C1396T:p.L466L exonic Lipe synonymous SNV uc009fsp.1:c.C1396T:p.L466L exonic ENSMUSG00000003123 synonymous SNV ENSMUST00000003207:c.C1525T:p.L509L 7qA3 NA NA chr7 26168535 TCAxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918059 0.918171 0.999879 78 0 0 55.588774 0.477273 0.02 -0.38586 23 21 672 588 60 60 0 0 GG 6.616337 22 0 610 0 KEEP + Lipe YES MNNG_1 chr7 27360579 27360579 C T intergenic "Nlrp9a(dist=1414),Vmn1r185(dist=35559)" NA NA exonic Nlrp9a nonsynonymous SNV uc012fge.1:c.C2741T:p.S914L exonic ENSMUSG00000054102 nonsynonymous SNV ENSMUST00000117252:c.C2741T:p.S914L 7qA3 NA NA chr7 27360579 AGTxATT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 0.999999 57 2 0 22.234717 0.666667 0.02 -0.113573 4 8 96 217 60 60 0 0 CC 10.52894 35 0 1001 0 KEEP + Nlrp9a YES MNNG_1 chr7 28157258 28157258 G A exonic Sptbn4 nonsynonymous SNV NM_001199235:c.C839T:p.T280I exonic Spnb4 nonsynonymous SNV uc009fvz.1:c.C839T:p.T280I exonic ENSMUSG00000011751 nonsynonymous SNV ENSMUST00000108362:c.C839T:p.T280I 7qA3 NA NA chr7 28157258 CCGxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 124 0 0 55.584423 0.468085 0.02 -0.429614 25 22 683 592 60 60 0 0 GG 19.215179 64 0 1682 0 KEEP - Sptbn4 YES MNNG_1 chr7 28304419 28304419 G A exonic Prx nonsynonymous SNV NM_198048:c.G3742A:p.A1248T exonic Prx nonsynonymous SNV uc012fgi.1:c.G3325A:p.A1109T exonic ENSMUSG00000053198 nonsynonymous SNV ENSMUST00000065487:c.G3742A:p.A1248T 7qA3 NA NA chr7 28304419 CTGxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 117 0 0 51.062998 0.434783 0.02 -0.412074 26 20 737 552 60 60 0 0 GG 15.934783 53 0 1449 0 KEEP + Prx YES MNNG_1 chr7 28939841 28939841 C T intronic 9530053A07Rik NA NA intronic 9530053A07Rik NA NA intronic ENSMUSG00000078776 NA NA 7qA3 NA NA chr7 28939841 GGCxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 160 0 0 51.728031 0.35 0.02 1.267795 39 21 1133 586 60 60 0 0 CC 21.05069 70 0 1942 0 KEEP + 9530053A07Rik YES MNNG_1 chr7 28964183 28964183 G A UTR3 Fbl NA NA UTR3 Fbl NA NA UTR3 ENSMUSG00000046865 NA NA 7qA3 NA NA chr7 28964183 AGAxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999998 0.999998 1 423 6 6 96.345881 0.34188 0.02 2.364434 77 40 2228 1099 60 60 0 0 GG 65.056241 226 1 6292 27 KEEP + Fbl YES MNNG_1 chr7 29108824 29108824 G A intronic Supt5 NA NA intronic Supt5h NA NA intronic ENSMUSG00000003435 NA NA 7qA3 NA NA chr7 29108824 GAAxACA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 99 0 0 37.178051 0.348837 0.02 -0.385878 28 15 825 421 60 60 0 0 GG 13.838211 46 0 1321 0 KEEP - Supt5 YES MNNG_1 chr7 29804752 29804752 G A exonic Ryr1 synonymous SNV NM_009109:c.C13170T:p.G4390G exonic Ryr1 synonymous SNV uc009gao.1:c.C13170T:p.G4390G exonic ENSMUSG00000030592 synonymous SNV ENSMUST00000032813:c.C13170T:p.G4390G 7qB1 NA NA chr7 29804752 CTGxCCG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 147 4 0 55.341067 0.407407 0.02 1.212912 32 22 922 607 60 60 0 0 GG 17.135691 57 0 1530 0 KEEP - Ryr1 YES MNNG_1 chr7 29922757 29922757 G A intronic Rasgrp4 NA NA intronic Rasgrp4 NA NA intronic ENSMUSG00000030589 NA NA 7qB1 NA NA chr7 29922757 TGGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423439 0.423478 0.999909 53 0 0 19.354928 0.380952 0.02 -0.184142 13 8 366 216 60 60 0 0 GG 7.217818 24 0 651 0 KEEP + Rasgrp4 YES MNNG_1 chr7 30149223 30149223 G A exonic Sipa1l3 nonsynonymous SNV NM_001081028:c.C3482T:p.A1161V exonic Sipa1l3 nonsynonymous SNV uc009gbr.1:c.C629T:p.A210V exonic ENSMUSG00000030583 nonsynonymous SNV ENSMUST00000085809:c.C3482T:p.A1161V 7qB1 NA NA chr7 30149223 GTGxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.99986 48 0 0 20.270495 0.4 0.02 -0.184144 12 8 339 223 60 60 0 0 GG 5.714978 19 0 533 0 KEEP - Sipa1l3 YES MNNG_1 chr7 31019528 31019528 G A intergenic "Polr2i(dist=1122),Wdr62(dist=5629)" NA NA intergenic "Polr2i(dist=1122),Wdr62(dist=5629)" NA NA exonic ENSMUSG00000056028 nonsynonymous SNV ENSMUST00000047308:c.C331T:p.P111S 7qB1 NA NA chr7 31019528 TGGxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 291 2 0 113.824842 0.313333 0.02 3.744096 103 47 3024 1319 60 60 0 0 GG 28.576062 95 0 2684 0 KEEP NA Polr2i YES MNNG_1 chr7 31220717 31220717 G A intronic Aplp1 NA NA intronic Aplp1 NA NA intronic ENSMUSG00000006651 NA NA 7qB1 NA NA chr7 31220717 ACAxCCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 132 2 0 51.129771 0.328125 0.02 1.134016 43 21 1242 587 60 60 0 0 GG 15.341316 51 0 1446 0 KEEP - Aplp1 YES MNNG_1 chr7 31226114 31226114 G A exonic Aplp1 nonsynonymous SNV NM_007467:c.C1028T:p.S343F exonic Aplp1 nonsynonymous SNV uc012fhn.1:c.C680T:p.S227F exonic ENSMUSG00000006651 nonsynonymous SNV ENSMUST00000006828:c.C1028T:p.S343F 7qB1 NA NA chr7 31226114 TTAxATT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.290142 0.292001 0.993634 36 0 0 18.436843 0.411765 0.02 -0.149097 10 7 297 201 60 60 0 0 GG 3.609922 12 0 344 0 KEEP - Aplp1 YES MNNG_1 chr7 31328601 31328601 G A exonic BC053749 nonsynonymous SNV NM_183321:c.C569T:p.S190F exonic BC053749 nonsynonymous SNV uc009get.1:c.C569T:p.S190F exonic ENSMUSG00000036864 nonsynonymous SNV ENSMUST00000062708:c.C569T:p.S190F 7qB1 NA NA chr7 31328601 AAGxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 159 3 0 105.635638 0.425532 0.02 0.870822 54 40 1601 1144 60 60 0 0 GG 14.128681 47 0 1316 0 KEEP - BC053749 YES MNNG_1 chr7 31360875 31360875 G A exonic Kmt2b nonsynonymous SNV NM_029274:c.C5650T:p.P1884S exonic Wbp7 nonsynonymous SNV uc009gff.1:c.C5116T:p.P1706S exonic ENSMUSG00000006307 nonsynonymous SNV ENSMUST00000006470:c.C5677T:p.P1893S 7qB1 NA NA chr7 31360875 CTGxAGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 57 0 0 22.598651 0.36 0.02 -0.219255 16 9 474 254 60 60 0 0 GG 6.90932 23 0 637 0 KEEP - Kmt2b YES MNNG_1 chr7 32552366 32552366 G A intergenic "Scgb1b7(dist=53367),Scgb2b12(dist=557939)" NA NA intergenic "Abpa29_a7(dist=53492),Abpa29_a7(dist=674194)" NA NA exonic ENSMUSG00000078383 synonymous SNV ENSMUST00000105174:c.G396A:p.E132E 7qB1 "Score=0.993003;Name=No.100563,chr7:33223722" NA chr7 32552366 AGAxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 97 0 34 10.029581 1 0.02 -0.02631 0 3 0 86 0 46 0 0 GG 22.556402 75 0 2133 0 KEEP NA Scgb1b7 YES MNNG_1 chr7 3314716 3314716 G A intronic Prkcg NA NA intronic Prkcc NA NA intronic ENSMUSG00000078816 NA NA 7qA1 NA NA chr7 3314716 AGGxCGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196285 0.196312 0.999863 36 0 0 11.00709 0.384615 0.02 -0.122532 8 5 236 124 60 60 0 0 GG 6.01013 20 0 544 0 KEEP + Prkcg YES MNNG_1 chr7 36309050 36309050 G A exonic Tdrd12 nonsynonymous SNV NM_028034:c.C227T:p.A76V exonic Tdrd12 nonsynonymous SNV uc012fik.1:c.C68T:p.A23V exonic ENSMUSG00000030491 nonsynonymous SNV ENSMUST00000127472:c.C68T:p.A23V 7qB2 NA NA chr7 36309050 AGAxCCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 139 0 0 32.773937 0.371429 0.02 -0.306899 22 13 635 366 60 60 0 0 GG 22.558492 75 0 2105 0 KEEP - Tdrd12 YES MNNG_1 chr7 36572785 36572785 A G exonic Zfp507 nonsynonymous SNV NM_177739:c.T2276C:p.V759A exonic "Zfp507,Znf507" nonsynonymous SNV uc009gki.1:c.T2276C:p.V759A exonic ENSMUSG00000044452 nonsynonymous SNV ENSMUST00000061586:c.T2276C:p.V759A 7qB2 NA NA chr7 36572785 CCGxCGT A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 144 1 0 33.1752 0.382353 0.02 -0.298096 21 13 592 368 60 60 0 0 AA 24.628268 82 0 2190 0 KEEP - Zfp507 NO MNNG_1 chr7 3863607 3863607 G A exonic Lilra6 synonymous SNV NM_011090:c.C1503T:p.L501L exonic Lilra6 synonymous SNV uc009ewp.2:c.C1503T:p.L501L exonic ENSMUSG00000030427 synonymous SNV ENSMUST00000038176:c.C1503T:p.L501L 7qA1 "Score=0.942681;Name=No.96083,chr7:4224202" NA chr7 3863607 GGAxAGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 200 1 2 70.644118 0.358974 0.02 1.011221 50 28 1454 794 60 60 0 0 GG 27.976333 93 0 2664 0 KEEP - Lilra6 YES MNNG_1 chr7 4593019 4593019 G A exonic Ppp6r1 synonymous SNV NM_172894:c.C1009T:p.L337L exonic Ppp6r1 synonymous SNV uc009eyb.1:c.C1009T:p.L337L exonic ENSMUSG00000052296 synonymous SNV ENSMUST00000064099:c.C1009T:p.L337L 7qA1 NA NA chr7 4593019 CCAxCTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 217 0 0 90.391036 0.440476 0.02 0.959076 47 37 1352 978 60 60 0 0 GG 29.477458 98 0 2753 0 KEEP - Ppp6r1 YES MNNG_1 chr7 51645980 51645980 G A exonic Syt3 nonsynonymous SNV NM_001114116:c.G266A:p.G89D exonic Syt3 nonsynonymous SNV uc009gph.2:c.G266A:p.G89D exonic ENSMUSG00000030731 nonsynonymous SNV ENSMUST00000120262:c.G266A:p.G89D 7qB4 NA NA chr7 51645980 GAGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 124 1 0 41.686882 0.382979 0.02 -0.411963 29 18 848 467 60 60 0 0 GG 16.833667 56 0 1525 0 KEEP + Syt3 YES MNNG_1 chr7 51846849 51846849 G A exonic Kcnc3 synonymous SNV NM_008422:c.G594A:p.E198E exonic Kcnc3 synonymous SNV uc009gqg.1:c.G594A:p.E198E exonic ENSMUSG00000062785 synonymous SNV ENSMUST00000071062:c.G594A:p.E198E 7qB4 NA NA chr7 51846849 TGAxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 98 0 0 69.070995 0.555556 0.02 -0.394392 20 25 578 706 60 60 0 0 GG 12.029688 40 0 1104 0 KEEP + Kcnc3 YES MNNG_1 chr7 52494091 52494091 G A exonic Cd37 nonsynonymous SNV NM_007645:c.C8T:p.A3V exonic Cd37 nonsynonymous SNV uc009guh.1:c.C8T:p.A3V exonic ENSMUSG00000030798 nonsynonymous SNV ENSMUST00000098461:c.C8T:p.A3V 7qB4 NA NA chr7 52494091 TGGxCGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077329 0.077336 0.999909 43 0 0 6.943011 0.333333 0.02 -0.078926 6 3 177 80 60 60 0 0 GG 7.218138 24 0 659 0 KEEP - Cd37 YES MNNG_1 chr7 52596018 52596018 G A exonic Ppfia3 synonymous SNV NM_029741:c.C3453T:p.P1151P exonic Ppfia3 synonymous SNV uc012fkh.1:c.C3453T:p.P1151P exonic ENSMUSG00000003863 synonymous SNV ENSMUST00000137578:c.C2973T:p.P991P 7qB4 NA NA chr7 52596018 GGGxGGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 54 0 0 29.958058 0.458333 0.02 -0.210484 13 11 380 319 60 60 0 0 GG 5.714312 19 0 526 0 KEEP - Ppfia3 YES MNNG_1 chr7 52665101 52665101 G A exonic Kcna7 nonsynonymous SNV NM_010596:c.G1441A:p.A481T exonic Kcna7 nonsynonymous SNV uc009guz.1:c.G1441A:p.A481T exonic ENSMUSG00000038201 nonsynonymous SNV ENSMUST00000107774:c.G1441A:p.A481T 7qB4 NA NA chr7 52665101 CCTxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990844 0.990964 0.999879 103 2 0 51.979804 0.354839 0.02 1.053681 40 22 1156 590 60 60 0 0 GG 6.617159 22 0 610 0 KEEP + Kcna7 YES MNNG_1 chr7 52966083 52966083 T G UTR3 Sphk2 NA NA UTR3 Sphk2 NA NA UTR3 ENSMUSG00000057342 NA NA 7qB4 NA NA chr7 52966083 TGCxTTT T G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 90 1 0 50.742106 0.52381 0.02 -0.376815 20 22 572 529 60 60 0 0 TT 10.226811 34 0 948 0 KEEP - Sphk2 NO MNNG_1 chr7 53153060 53153060 G A intronic Tmem143 NA NA exonic Tmem143 nonsynonymous SNV uc009gxq.2:c.G199A:p.D67N intronic ENSMUSG00000002781 NA NA 7qB4 NA NA chr7 53153060 AAGxACC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 0.999999 78 2 0 19.348472 0.307692 0.02 -0.227968 18 8 513 225 60 60 0 0 GG 10.767645 36 0 1005 0 KEEP + Tmem143 YES MNNG_1 chr7 53267994 53267994 G A exonic Abcc6 nonsynonymous SNV NM_018795:c.C1202T:p.S401F exonic Abcc6 nonsynonymous SNV uc009gya.1:c.C1202T:p.S401F exonic ENSMUSG00000030834 nonsynonymous SNV ENSMUST00000002850:c.C1202T:p.S401F 7qB4 NA NA chr7 53267994 CTGxACT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934407 0.934492 0.999909 88 2 0 61.699668 0.547619 0.02 -0.403325 19 23 553 633 60 60 0 0 GG 7.218281 24 0 668 0 KEEP - Abcc6 YES MNNG_1 chr7 53954771 53954771 G A exonic Saal1 synonymous SNV NM_030233:c.C1005T:p.A335A exonic Saal1 synonymous SNV uc009gyu.2:c.C1005T:p.A335A exonic ENSMUSG00000006763 synonymous SNV ENSMUST00000143082:c.C1005T:p.A335A 7qB4 NA NA chr7 53954771 TGAxGCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 142 0 0 53.063083 0.366667 0.02 1.267447 38 22 1115 597 60 60 0 0 GG 18.648184 62 0 1748 0 KEEP - Saal1 YES MNNG_1 chr7 54022540 54022540 G A exonic Hps5 synonymous SNV NM_001005247:c.C2866T:p.L956L exonic Hps5 synonymous SNV uc009gzf.2:c.C1108T:p.L370L exonic ENSMUSG00000014418 synonymous SNV ENSMUST00000014562:c.C2866T:p.L956L 7qB4 NA NA chr7 54022540 TCAxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 88 2 0 12.523127 0.384615 0.02 -0.114005 8 5 232 139 60 60 0 0 GG 17.746155 59 0 1645 0 KEEP - Hps5 YES MNNG_1 chr7 55454528 55454528 G A exonic Mrgprb4 synonymous SNV NM_205795:c.C21T:p.A7A exonic Mrgprb4 synonymous SNV uc009han.1:c.C21T:p.A7A exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.C21T:p.A7A 7qB4 NA NA chr7 55454528 CCAxGCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099658 0.099721 0.999366 32 0 0 17.338352 0.6 0.02 -0.087702 4 6 117 174 60 60 0 0 GG 5.112734 17 0 473 0 KEEP - Mrgprb4 YES MNNG_1 chr7 6210237 6210237 G A intronic Gm6792 NA NA intronic Gm6792 NA NA intronic ENSMUSG00000053367 NA NA 7qA1 NA NA chr7 6210237 TAAxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 81 0 0 6.901448 0.25 0.02 -0.105229 9 3 253 84 60 60 0 0 GG 15.314226 51 0 1349 0 KEEP + Gm6792 YES MNNG_1 chr7 63475967 63475967 G A exonic Herc2 nonsynonymous SNV NM_010418:c.G13117A:p.G4373S exonic "Herc2,rjs" nonsynonymous SNV uc012flj.1:c.G115A:p.G39S exonic ENSMUSG00000030451 nonsynonymous SNV ENSMUST00000041015:c.G12895A:p.G4299S 7qB5 NA NA chr7 63475967 GAGxGCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.954491 0.954491 1 137 3 0 54.28219 0.416667 0.02 -0.429746 28 20 817 589 60 60 0 0 GG 21.047865 70 0 1927 0 KEEP + Herc2 YES MNNG_1 chr7 63552659 63552659 G A intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63552659 ATTxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196285 0.196312 0.999863 38 0 0 17.739141 0.538462 0.02 -0.122754 6 7 172 183 60 60 0 0 GG 5.953073 20 0 524 0 KEEP + Oca2 YES MNNG_1 chr7 66936520 66936520 A T intergenic "Ipw(dist=2272),Snord116l2(dist=2438)" NA NA intergenic "Ipw(dist=2272),Snord116(dist=2438)" NA NA upstream ENSMUSG00000075979 NA NA 7qC "Score=0.95523;Name=No.101420,chr7:67007294" NA chr7 66936520 CCAxGCA A T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 408 8 134 28.527242 0.375 0.02 -0.298115 20 12 571 320 40 54 0 0 AA 76.099607 253 0 7067 0 KEEP NA Ipw NO MNNG_1 chr7 73104192 73104192 G A exonic Pcsk6 synonymous SNV NM_011048:c.G1176A:p.K392K exonic Pcsk6 synonymous SNV uc009hgw.2:c.G1176A:p.K392K exonic ENSMUSG00000030513 synonymous SNV ENSMUST00000055576:c.G1134A:p.K378K 7qC NA NA chr7 73104192 GAAxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.99986 48 0 0 20.555511 0.380952 0.02 -0.184171 13 8 381 228 60 60 0 0 GG 5.713712 19 0 535 0 KEEP + Pcsk6 YES MNNG_1 chr7 85595882 85595882 G A intronic Ntrk3 NA NA intronic Ntrk3 NA NA intronic ENSMUSG00000059146 NA NA 7qD3 NA NA chr7 85595882 TTAxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 80 0 0 17.71571 0.35 0.02 -0.175406 13 7 384 200 60 60 0 0 GG 15.342497 51 0 1467 0 KEEP - Ntrk3 YES MNNG_1 chr7 87503116 87503116 G A intronic Man2a2 NA NA intronic Man2a2 NA NA intronic ENSMUSG00000038886 NA NA 7qD3 NA NA chr7 87503116 CTGxTTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.99986 47 0 0 29.432955 0.52381 0.02 -0.184158 10 11 295 305 60 60 0 0 GG 5.715332 19 0 537 0 KEEP - Man2a2 YES MNNG_1 chr7 88605989 88605989 G T intronic Ap3b2 NA NA intronic Ap3b2 NA NA intronic ENSMUSG00000062444 NA NA 7qD3 NA NA chr7 88605989 GTGxTGG G T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.320453 0.322807 0.992708 31 0 0 27.598026 0.555556 0.02 -0.157853 8 10 231 282 60 60 0 0 GG 2.99193 10 0 254 0 KEEP - Ap3b2 NO MNNG_1 chr7 92005079 92005079 T C exonic Olfr291 nonsynonymous SNV NM_146415:c.T205C:p.S69P exonic Olfr291 nonsynonymous SNV uc009iep.2:c.T205C:p.S69P exonic ENSMUSG00000070460 nonsynonymous SNV ENSMUST00000078172:c.T205C:p.S69P 7qD3 NA NA chr7 92005079 CTGxCCT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 109 1 10 11.232762 0.571429 0.02 -0.078906 3 4 76 114 29 29 0 0 TT 23.4397 78 0 2125 0 KEEP + Olfr291 NO MNNG_1 chr7 92064489 92064489 T C exonic Olfr290 nonsynonymous SNV NM_146416:c.T199C:p.S67P exonic Olfr290 nonsynonymous SNV uc009ieq.1:c.T199C:p.S67P exonic ENSMUSG00000070459 nonsynonymous SNV ENSMUST00000073468:c.T199C:p.S67P 7qD3 NA NA chr7 92064489 CTGxCCT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 230 0 1 68.827544 0.241667 0.02 2.534926 91 29 2467 838 60 60 0 0 TT 26.159615 87 0 2344 0 KEEP + Olfr290 NO MNNG_1 chr8 106816947 106816947 G A exonic Cmtm2a nonsynonymous SNV NM_027022:c.C10T:p.P4S exonic Cmtm2a nonsynonymous SNV uc009nah.1:c.C10T:p.P4S exonic ENSMUSG00000074127 nonsynonymous SNV ENSMUST00000034344:c.C10T:p.P4S 8qD3 NA NA chr8 106816947 TCGxTGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 144 5 0 88.279265 0.578947 0.02 1.186688 24 33 676 894 60 60 0 0 GG 18.6313 62 0 1681 0 KEEP - Cmtm2a YES MNNG_1 chr8 108240989 108240989 G A exonic Gfod2 nonsynonymous SNV NM_027469:c.C821T:p.A274V exonic Gfod2 nonsynonymous SNV uc009neb.1:c.C821T:p.A274V exonic ENSMUSG00000013150 nonsynonymous SNV ENSMUST00000013294:c.C821T:p.A274V 8qD3 NA NA chr8 108240989 GCAxCAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995644 0.995687 0.999957 102 0 0 105.035837 0.588235 0.02 1.099128 28 40 821 1060 60 60 0 0 GG 7.808055 26 0 703 0 KEEP - Gfod2 YES MNNG_1 chr8 108372824 108372824 G A intronic Cenpt NA NA intronic Cenpt NA NA intronic ENSMUSG00000036672 NA NA 8qD3 NA NA chr8 108372824 CAAxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 98 1 0 78.040582 0.658537 0.02 -0.359512 14 27 401 766 60 60 0 0 GG 13.838167 46 0 1318 0 KEEP - Cenpt YES MNNG_1 chr8 108413961 108413961 G A exonic Edc4 synonymous SNV NM_181594:c.G2757A:p.G919G exonic Edc4 synonymous SNV uc009nek.1:c.G2757A:p.G919G exonic ENSMUSG00000036270 synonymous SNV ENSMUST00000136048:c.G2619A:p.G873G 8qD3 NA NA chr8 108413961 TAGxGAT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 118 0 0 68.889735 0.555556 0.02 -0.40295 20 25 591 704 60 60 0 0 GG 16.8273 56 0 1537 0 KEEP + Edc4 YES MNNG_1 chr8 109060730 109060730 G A exonic Cdh3 synonymous SNV NM_001037809:c.G381A:p.K127K exonic Cdh3 synonymous SNV uc009ngg.1:c.G378A:p.K126K exonic ENSMUSG00000061048 synonymous SNV ENSMUST00000080797:c.G381A:p.K127K 8qD3 NA NA chr8 109060730 TAAxGAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 123 0 0 109.112321 0.72549 0.02 1.346353 14 37 410 1045 60 60 0 0 GG 16.243628 54 0 1527 0 KEEP + Cdh3 YES MNNG_1 chr8 11004757 11004757 C T exonic Irs2 nonsynonymous SNV NM_001081212:c.G3674A:p.S1225N exonic Irs2 nonsynonymous SNV uc009kuz.1:c.G3674A:p.S1225N exonic ENSMUSG00000038894 nonsynonymous SNV ENSMUST00000040514:c.G3674A:p.S1225N 8qA1.1 NA NA chr8 11004757 GAAxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 151 4 0 127.605075 0.573171 0.02 0.967413 35 47 993 1295 60 60 0 0 CC 14.736335 49 0 1357 0 KEEP - Irs2 YES MNNG_1 chr8 112078151 112078151 G A exonic Dhx38 nonsynonymous SNV NM_178380:c.C2500T:p.P834S exonic Dhx38 nonsynonymous SNV uc009nij.1:c.C2500T:p.P834S exonic ENSMUSG00000037993 nonsynonymous SNV ENSMUST00000042601:c.C2500T:p.P834S 8qD3 NA NA chr8 112078151 TGGxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 0.999999 115 0 0 112.708175 0.590909 0.02 1.205952 27 39 778 1135 60 60 0 0 GG 10.781407 36 0 967 0 KEEP - Dhx38 YES MNNG_1 chr8 113104598 113104598 G A exonic Hydin nonsynonymous SNV NM_172916:c.G11708A:p.G3903D exonic Hydin nonsynonymous SNV uc009nks.1:c.G11708A:p.G3903D exonic ENSMUSG00000059854 nonsynonymous SNV ENSMUST00000043141:c.G11708A:p.G3903D 8qE1 NA NA chr8 113104598 AGGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 106 4 0 59.227852 0.469388 0.02 -0.436591 26 23 721 630 60 60 0 0 GG 11.429567 38 0 1058 0 KEEP + Hydin YES MNNG_1 chr8 113113519 113113519 G A exonic Hydin nonsynonymous SNV NM_172916:c.G13142A:p.S4381N exonic Hydin nonsynonymous SNV uc009nks.1:c.G13142A:p.S4381N exonic ENSMUSG00000059854 nonsynonymous SNV ENSMUST00000043141:c.G13142A:p.S4381N 8qE1 NA NA chr8 113113519 TGAxGTA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 86 0 0 54.897048 0.633333 0.02 -0.263078 11 19 312 544 60 60 0 0 GG 13.535111 45 0 1262 0 KEEP + Hydin YES MNNG_1 chr8 113156379 113156379 G A exonic Vac14 nonsynonymous SNV NM_146216:c.G286A:p.E96K exonic Vac14 nonsynonymous SNV uc009nku.1:c.G286A:p.E96K exonic ENSMUSG00000010936 nonsynonymous SNV ENSMUST00000034190:c.G286A:p.E96K 8qE1 NA NA chr8 113156379 ATAxAGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612365 0.612407 0.999931 58 0 0 41.758241 0.576923 0.02 -0.236785 11 15 329 423 60 60 0 0 GG 7.219023 24 0 682 0 KEEP + Vac14 YES MNNG_1 chr8 113581301 113581301 G A UTR3 Exosc6 NA NA UTR3 Exosc6 NA NA UTR3 ENSMUSG00000031960 NA NA 8qE1 NA NA chr8 113581301 GCAxCCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 75 1 0 57.987323 0.617647 0.02 -0.298134 13 21 371 578 60 60 0 0 GG 10.826853 36 0 988 0 KEEP + Exosc6 YES MNNG_1 chr8 114400370 114400370 G A intronic Tmem170 NA NA intronic Tmem170 NA NA intronic ENSMUSG00000031953 NA NA 8qE1 NA NA chr8 114400370 CAGxTGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161432 0.162467 0.993634 32 0 0 15.664702 0.461538 0.02 -0.113998 7 6 199 167 60 60 0 0 GG 3.608325 12 0 324 0 KEEP - Tmem170 YES MNNG_1 chr8 114760820 114760820 G A intergenic "Terf2ip(dist=216392),Cntnap4(dist=333123)" NA NA intergenic "Terf2ip(dist=216392),Cntnap4(dist=333123)" NA NA intergenic "ENSMUSG00000093165(dist=18697),ENSMUSG00000092804(dist=98382)" NA NA 8qE1 NA NA chr8 114760820 TTGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 195 2 2 73.040276 0.517857 0.02 1.204608 27 29 786 761 60 60 0 0 GG 29.173161 97 0 2650 0 KEEP NA Terf2ip YES MNNG_1 chr8 11509304 11509304 C G intronic Carkd NA NA intronic Carkd NA NA intronic ENSMUSG00000031505 NA NA 8qA1.1 NA NA chr8 11509304 CAGxTTG C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 136 1 0 51.731872 0.272727 0.02 1.109696 56 21 1568 613 60 60 0 0 CC 13.535175 45 0 1252 0 KEEP + Carkd NO MNNG_1 chr8 119562146 119562146 G A exonic Pkd1l2 synonymous SNV NM_029686:c.C3909T:p.T1303T exonic Pkd1l2 synonymous SNV uc012glk.1:c.C594T:p.T198T exonic ENSMUSG00000034416 synonymous SNV ENSMUST00000109093:c.C3912T:p.T1304T 8qE1 NA NA chr8 119562146 GGTxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 227 1 0 181.462737 0.548387 0.02 2.500548 56 68 1534 1861 60 60 0 0 GG 21.302818 71 0 1870 0 KEEP - Pkd1l2 YES MNNG_1 chr8 119953649 119953649 C A exonic Cmip nonsynonymous SNV NM_001163262:c.C862A:p.Q288K exonic 4933407C03Rik nonsynonymous SNV uc009noz.2:c.C862A:p.Q288K exonic ENSMUSG00000034390 nonsynonymous SNV ENSMUST00000039866:c.C760A:p.Q254K 8qE1 NA NA chr8 119953649 ACCxAGG C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 143 3 0 37.560416 0.271186 0.02 1.169045 43 16 1256 449 60 60 0 0 CC 17.146815 57 0 1629 0 KEEP + Cmip NO MNNG_1 chr8 125018733 125018733 G A exonic Piezo1 synonymous SNV NM_001037298:c.C3135T:p.Y1045Y exonic Fam38a synonymous SNV uc009ntb.2:c.C150T:p.Y50Y exonic ENSMUSG00000014444 synonymous SNV ENSMUST00000128383:c.C1821T:p.Y607Y 8qE1 NA NA chr8 125018733 CTGxTAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 116 4 0 93.780603 0.566667 0.02 1.151502 26 34 768 954 60 60 0 0 GG 8.354086 37 1 1036 26 KEEP - Piezo1 YES MNNG_1 chr8 125096015 125096015 G A exonic Cdt1 nonsynonymous SNV NM_026014:c.G1490A:p.S497N exonic Cdt1 nonsynonymous SNV uc009nte.1:c.G866A:p.S289N exonic ENSMUSG00000006585 nonsynonymous SNV ENSMUST00000006760:c.G1490A:p.S497N 8qE1 NA NA chr8 125096015 ACAxTTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 89 0 0 85.528897 0.645833 0.02 -0.420865 17 31 467 843 60 60 0 0 GG 8.722791 29 0 808 0 KEEP + Cdt1 YES MNNG_1 chr8 125423492 125423492 G A intronic Ankrd11 NA NA intronic "AK040202,Ankrd11" NA NA intronic "ENSMUSG00000035569,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 125423492 TCGxCCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 181 0 0 149.670378 0.580645 0.02 0.879704 39 54 1153 1514 60 60 0 0 GG 20.450829 68 0 1878 0 KEEP + Ankrd11 YES MNNG_1 chr8 125985428 125985428 T C exonic Def8 nonsynonymous SNV NM_001281803:c.T1309C:p.S437P exonic Def8 nonsynonymous SNV uc009nvy.1:c.T1309C:p.S437P exonic ENSMUSG00000001482 nonsynonymous SNV ENSMUST00000065534:c.T1309C:p.S437P 8qE1 NA NA chr8 125985428 CAGxCAC T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 190 2 0 192.806669 0.663265 0.02 1.03276 33 65 924 1890 60 60 0 0 TT 17.42897 58 0 1581 0 KEEP + Def8 NO MNNG_1 chr8 126861256 126861256 G A intronic Galnt2 NA NA intronic Galnt2 NA NA intronic "ENSMUSG00000089704,ENSMUSG00000092329" NA NA 8qE2 NA NA chr8 126861256 TGGxGCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 105 2 0 101.114806 0.666667 0.02 1.346253 17 34 493 990 60 60 0 0 GG 11.430226 38 0 1062 0 KEEP + Galnt2 YES MNNG_1 chr8 127208448 127208448 G A exonic Ttc13 nonsynonymous SNV NM_145607:c.C955T:p.H319Y exonic Ttc13 nonsynonymous SNV uc009nxh.1:c.C955T:p.H319Y exonic ENSMUSG00000037300 nonsynonymous SNV ENSMUST00000041614:c.C955T:p.H319Y 8qE2 NA NA chr8 127208448 AGTxGTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260399 0.260965 0.997832 36 0 0 30.725451 0.6875 0.02 -0.140297 5 11 149 298 60 60 0 0 GG 4.813255 16 0 458 0 KEEP - Ttc13 YES MNNG_1 chr8 127435625 127435625 G A intronic Egln1 NA NA intronic Egln1 NA NA intronic ENSMUSG00000031987 NA NA 8qE2 NA NA chr8 127435625 CACxCCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.99986 53 0 0 51.91587 0.692308 0.02 -0.227959 8 18 206 503 60 60 0 0 GG 5.706664 19 0 457 0 KEEP - Egln1 YES MNNG_1 chr8 131237833 131237833 G A exonic Itgb1 nonsynonymous SNV NM_010578:c.G554A:p.G185D exonic Itgb1 nonsynonymous SNV uc009nzw.2:c.G221A:p.G74D exonic ENSMUSG00000025809 nonsynonymous SNV ENSMUST00000090006:c.G554A:p.G185D 8qE2 NA NA chr8 131237833 TTGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 101 0 0 33.829102 0.4 0.02 -0.306683 21 14 614 374 60 60 0 0 GG 16.845129 56 0 1577 0 KEEP + Itgb1 YES MNNG_1 chr8 15011072 15011072 C T UTR5 Kbtbd11 NA NA UTR5 Kbtbd11 NA NA UTR5 ENSMUSG00000055675 NA NA 8qA1.1 NA NA chr8 15011072 GCGxACA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 90 2 0 31.770525 0.5 0.02 -0.236542 13 13 367 334 60 60 0 0 CC 14.418566 48 0 1308 0 KEEP + Kbtbd11 YES MNNG_1 chr8 23138942 23138942 C T exonic Atp7b nonsynonymous SNV NM_007511:c.G351A:p.M117I exonic Atp7b nonsynonymous SNV uc009lck.1:c.G351A:p.M117I exonic ENSMUSG00000006567 nonsynonymous SNV ENSMUST00000006742:c.G351A:p.M117I 8qA2 NA NA chr8 23138942 GTTxATG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 204 2 0 157.201407 0.58 0.02 2.487221 42 58 1243 1591 60 60 0 0 CC 23.164506 77 0 2220 0 KEEP - Atp7b YES MNNG_1 chr8 24225977 24225977 C T exonic Ank1 nonsynonymous SNV NM_001277280:c.C3364T:p.P1122S exonic Ank1 nonsynonymous SNV uc009lef.2:c.C3364T:p.P1122S exonic ENSMUSG00000031543 nonsynonymous SNV ENSMUST00000152511:c.C2056T:p.P686S 8qA2 NA NA chr8 24225977 GTAxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963772 0.963774 0.999998 102 5 0 19.92338 0.2 0.02 1.248757 40 10 1128 260 60 60 0 1 CC 10.211118 34 0 933 0 KEEP + Ank1 YES MNNG_1 chr8 26281774 26281774 C T exonic Tacc1 synonymous SNV NM_199323:c.G372A:p.Q124Q exonic Tacc1 synonymous SNV uc009lft.1:c.G372A:p.Q124Q exonic ENSMUSG00000065954 synonymous SNV ENSMUST00000084512:c.G372A:p.Q124Q 8qA2 NA NA chr8 26281774 CTTxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 85 4 0 20.669907 0.4 0.02 -0.175408 12 8 359 227 60 60 0 0 CC 15.642912 52 0 1493 0 KEEP - Tacc1 YES MNNG_1 chr8 27180572 27180572 C T exonic Hook3 nonsynonymous SNV NM_207659:c.G1096A:p.G366R exonic Hook3 nonsynonymous SNV uc009lhj.2:c.G1096A:p.G366R exonic ENSMUSG00000037234 nonsynonymous SNV ENSMUST00000037182:c.G1096A:p.G366R 8qA2 NA NA chr8 27180572 GTCxCCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 88 0 0 30.123778 0.5 0.02 -0.192924 11 11 308 315 60 60 0 0 CC 17.142086 57 0 1586 0 KEEP - Hook3 YES MNNG_1 chr8 33028696 33028696 C T upstream Nrg1 NA NA intronic Nrg1 NA NA intronic ENSMUSG00000062991 NA NA 8qA3 NA NA chr8 33028696 GGCxCGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 33 0 0 11.617634 0.357143 0.02 -0.122682 9 5 255 132 60 60 0 0 CC 4.812673 16 0 446 0 KEEP - Nrg1 YES MNNG_1 chr8 34497283 34497283 C T exonic Purg nonsynonymous SNV NM_001098233:c.C476T:p.S159F exonic Purg nonsynonymous SNV uc009ljx.1:c.C476T:p.S159F exonic ENSMUSG00000049184 nonsynonymous SNV ENSMUST00000070340:c.C476T:p.S159F 8qA4 NA NA chr8 34497283 CCTxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 75 0 0 53.995506 0.5 0.02 -0.359563 20 20 587 565 60 60 0 0 CC 8.723394 29 0 821 0 KEEP + Purg YES MNNG_1 chr8 3602157 3602157 T A intronic Camsap3 NA NA intronic 2310057J16Rik NA NA intronic ENSMUSG00000044433 NA NA 8qA1.1 NA NA chr8 3602157 ATAxCCA T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780989 0.78106 0.999909 67 0 0 12.286527 0.176471 0.02 -0.298107 28 6 761 163 60 60 0 0 TT 7.215349 24 0 643 0 KEEP + Camsap3 NO MNNG_1 chr8 37293096 37293096 T C intronic Lonrf1 NA NA intronic Lonrf1 NA NA intronic ENSMUSG00000039633 NA NA 8qA4 NA NA chr8 37293096 TTAxACC T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999998 53 0 0 24.52992 0.5625 0.02 -0.140293 7 9 187 250 60 60 0 0 TT 9.923577 33 0 882 0 KEEP - Lonrf1 NO MNNG_1 chr8 38057855 38057855 C T UTR3 AI429214 NA NA ncRNA_UTR3 AI429214 NA NA UTR3 ENSMUSG00000074384 NA NA 8qA4 NA NA chr8 38057855 CTGxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053834 0.054137 0.994391 25 0 0 7.848535 0.375 0.02 -0.069612 5 3 128 87 60 60 0 0 CC 3.910769 13 0 372 0 KEEP - AI429214 YES MNNG_1 chr8 4210956 4210956 C T exonic BC068157 nonsynonymous SNV NM_207203:c.G2860A:p.E954K exonic BC068157 nonsynonymous SNV uc012fzb.1:c.G2860A:p.E954K exonic ENSMUSG00000064125 nonsynonymous SNV ENSMUST00000168386:c.G2860A:p.E954K 8qA1.1 NA NA chr8 4210956 ACTxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865624 0.865745 0.99986 65 0 0 50.625209 0.487179 0.02 -0.342027 20 19 592 533 60 60 0 0 CC 5.715668 19 0 542 0 KEEP + BC068157 YES MNNG_1 chr8 4243923 4243923 C T intronic Map2k7 NA NA intronic Map2k7 NA NA intronic ENSMUSG00000002948 NA NA 8qA1.1 NA NA chr8 4243923 AAGxTCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 120 0 0 62.159597 0.454545 0.02 1.204187 30 25 875 667 60 60 0 0 CC 15.640663 52 0 1450 0 KEEP + Map2k7 YES MNNG_1 chr8 44605639 44605639 C T exonic Adam26b nonsynonymous SNV NM_001009547:c.G1679A:p.R560K exonic Adam26b nonsynonymous SNV uc009loe.1:c.G1679A:p.R560K exonic ENSMUSG00000063900 nonsynonymous SNV ENSMUST00000080135:c.G1679A:p.R560K 8qA4 "Score=0.906139;Name=No.104123,chr8:44735926" NA chr8 44605639 CTCxTTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 292 2 0 85.148216 0.410256 0.02 1.109919 46 32 1297 928 60 60 0 0 CC 47.817768 159 0 4501 0 KEEP - Adam26b YES MNNG_1 chr8 46102715 46102715 C T intronic Fat1 NA NA ncRNA_exonic AK133166 NA NA ncRNA_exonic ENSMUSG00000091546 NA NA 8qB1.1 NA NA chr8 46102715 GTTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 67 0 0 9.281199 0.235294 0.02 -0.157869 13 4 386 114 60 60 0 0 CC 10.228008 34 0 970 0 KEEP + Fat1 YES MNNG_1 chr8 46868320 46868320 C T ncRNA_intronic D330022K07Rik NA NA intronic Sorbs2 NA NA ncRNA_intronic ENSMUSG00000085440 NA NA 8qB1.1 NA NA chr8 46868320 GAGxGCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 324 6 0 216.267365 0.47486 0.02 3.517706 94 85 2361 2295 60 60 0 0 CC 31.23382 104 0 2473 0 KEEP + D330022K07Rik YES MNNG_1 chr8 48754311 48754311 C T exonic Ing2 synonymous SNV NM_023503:c.G555A:p.K185K exonic Ing2 synonymous SNV uc009lrf.2:c.G555A:p.K185K exonic ENSMUSG00000063049 synonymous SNV ENSMUST00000080353:c.G555A:p.K185K 8qB1.1 NA NA chr8 48754311 GGAxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 219 4 0 74.026285 0.375 0.02 0.993769 50 30 1435 827 60 60 0 0 CC 30.37667 101 0 2825 0 KEEP - Ing2 YES MNNG_1 chr8 48907644 48907644 C T exonic Cldn24 nonsynonymous SNV NM_001111318:c.C148T:p.L50F exonic Cldn24 nonsynonymous SNV uc012gdp.1:c.C148T:p.L50F exonic ENSMUSG00000061974 nonsynonymous SNV ENSMUST00000079639:c.C148T:p.L50F 8qB1.1 NA NA chr8 48907644 GGGxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94173 0.941741 0.999988 128 0 38 88.488177 0.659574 0.02 -0.412164 16 31 465 868 37 60 0 0 CC 10.527855 35 0 987 0 KEEP + Cldn24 YES MNNG_1 chr8 49342270 49342270 C T exonic Tenm3 nonsynonymous SNV NM_001145937:c.G4984A:p.D1662N exonic Odz3 nonsynonymous SNV uc009lrr.2:c.G4984A:p.D1662N exonic ENSMUSG00000031561 nonsynonymous SNV ENSMUST00000110348:c.G4477A:p.D1493N 8qB1.2 NA NA chr8 49342270 TGTxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 115 1 0 40.805781 0.372093 0.02 -0.394657 27 16 803 455 60 60 0 0 CC 16.181568 54 0 1505 0 KEEP - Tenm3 YES MNNG_1 chr8 49731716 49731716 C T exonic Tenm3 nonsynonymous SNV NM_001145937:c.G407A:p.G136D exonic Odz3 nonsynonymous SNV uc009lrr.2:c.G407A:p.G136D exonic ENSMUSG00000031561 nonsynonymous SNV ENSMUST00000033965:c.G407A:p.G136D 8qB1.2 NA NA chr8 49731716 CTGxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 210 1 0 116.863451 0.581081 0.02 1.046942 31 43 861 1182 60 60 0 0 CC 30.590262 102 0 2726 0 KEEP - Tenm3 YES MNNG_1 chr8 59801137 59801137 C T exonic Hand2 nonsynonymous SNV NM_010402:c.C434T:p.T145I exonic Hand2 nonsynonymous SNV uc009lss.2:c.C434T:p.T145I exonic ENSMUSG00000038193 nonsynonymous SNV ENSMUST00000040104:c.C434T:p.T145I 8qB2 NA NA chr8 59801137 CCAxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 113 0 0 49.77814 0.542857 0.02 -0.306881 16 19 450 512 60 60 0 0 CC 17.109799 57 0 1556 0 KEEP + Hand2 YES MNNG_1 chr8 59964288 59964288 G A intronic Sap30 NA NA intronic Sap30 NA NA intronic ENSMUSG00000031609 NA NA 8qB2 NA NA chr8 59964288 TGGxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120175 0.120436 0.997832 32 0 0 20.306218 0.636364 0.02 -0.096471 4 7 118 201 60 60 0 0 GG 4.81267 16 0 447 0 KEEP - Sap30 YES MNNG_1 chr8 67085435 67085435 C T exonic Cpe nonsynonymous SNV NM_013494:c.G1078A:p.D360N exonic Cpe nonsynonymous SNV uc009luw.1:c.G1078A:p.D360N exonic ENSMUSG00000037852 nonsynonymous SNV ENSMUST00000048967:c.G1078A:p.D360N 8qB3.1 NA NA chr8 67085435 TATxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 82 0 0 31.255097 0.4 0.02 -0.263109 18 12 534 343 60 60 0 0 CC 10.829417 36 0 1026 0 KEEP - Cpe YES MNNG_1 chr8 67525314 67525314 G A exonic Trim60 nonsynonymous SNV NM_153097:c.C181T:p.P61S exonic Trim60 nonsynonymous SNV uc009lve.2:c.C181T:p.P61S exonic ENSMUSG00000053490 nonsynonymous SNV ENSMUST00000048565:c.C181T:p.P61S 8qB3.1 NA NA chr8 67525314 TCGxTGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865735 0.865745 0.999988 73 0 0 62.440128 0.615385 0.02 -0.341829 15 24 426 623 60 60 0 0 GG 8.117337 27 0 733 0 KEEP - Trim60 YES MNNG_1 chr8 71351179 71351179 C T exonic Ints10 synonymous SNV NM_027590:c.C1980T:p.H660H exonic Ints10 synonymous SNV uc009lwm.1:c.C1980T:p.H660H exonic ENSMUSG00000031864 synonymous SNV ENSMUST00000034328:c.C1980T:p.H660H 8qB3.3 NA NA chr8 71351179 GCAxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 413 2 0 111.108731 0.301887 0.02 3.691411 111 48 3200 1305 60 60 0 0 CC 53.475698 178 0 4798 0 KEEP + Ints10 YES MNNG_1 chr8 72426859 72426859 C T exonic Tssk6 nonsynonymous SNV NM_032004:c.C653T:p.A218V exonic Tssk6 nonsynonymous SNV uc009lye.1:c.C653T:p.A218V exonic ENSMUSG00000047654 nonsynonymous SNV ENSMUST00000050373:c.C653T:p.A218V 8qB3.3 NA NA chr8 72426859 TTGxTGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999996 0.999996 1 240 3 0 93.363125 0.348214 0.02 2.399514 73 39 2137 1062 60 60 0 0 CC 27.372022 91 0 2557 0 KEEP + Tssk6 YES MNNG_1 chr8 72595597 72595597 C T intronic Sugp1 NA NA intronic Sugp1 NA NA intronic ENSMUSG00000011306 NA NA 8qB3.3 NA NA chr8 72595597 AAAxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 71 0 0 15.342056 0.21875 0.02 -0.280599 25 7 700 193 60 60 0 0 CC 10.225399 34 0 929 0 KEEP + Sugp1 YES MNNG_1 chr8 72859131 72859131 C T splicing "Upf1(NM_030680:exon18:c.2442+1G>A,NM_001122829:exon18:c.2475+1G>A)" NA NA splicing "Upf1(uc009mab.2:exon18:c.2475+1G>A,uc012gfa.1:exon18:c.2442+1G>A)" NA NA splicing ENSMUSG00000058301(ENSMUST00000075666:exon18:c.2475+1G>A) NA NA 8qB3.3 NA NA chr8 72859131 GTAxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.908987 0.909069 0.999909 77 1 0 65.085411 0.571429 0.02 -0.377057 18 24 507 661 60 60 0 0 CC 7.217862 24 0 653 0 KEEP - Upf1 YES MNNG_1 chr8 73852527 73852527 C A exonic Myo9b nonsynonymous SNV NM_001142322:c.C1619A:p.A540D exonic Myo9b nonsynonymous SNV uc012gfp.1:c.C1619A:p.A540D exonic ENSMUSG00000004677 nonsynonymous SNV ENSMUST00000071935:c.C1619A:p.A540D 8qB3.3 NA NA chr8 73852527 ATGxCAA C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 81 1 0 50.729803 0.558824 0.02 -0.298065 15 19 421 518 60 60 0 0 CC 11.063178 37 0 993 0 KEEP + Myo9b NO MNNG_1 chr8 73883459 73883459 C T exonic Myo9b nonsynonymous SNV NM_001142322:c.C5974T:p.P1992S exonic Myo9b nonsynonymous SNV uc009mcj.2:c.C5974T:p.P1992S exonic ENSMUSG00000004677 nonsynonymous SNV ENSMUST00000170242:c.C5974T:p.P1992S 8qB3.3 NA NA chr8 73883459 GGGxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.845771 0.851984 0.992708 54 0 0 45.855553 0.527778 0.02 -0.313843 17 19 468 477 60 60 1 0 CC 3.004708 10 0 261 0 KEEP + Myo9b YES MNNG_1 chr8 74380996 74380996 C T intergenic "Fcho1(dist=131416),Zfp709(dist=24971)" NA NA intergenic "AK142664(dist=75775),Zfp709(dist=24971)" NA NA exonic ENSMUSG00000091391 nonsynonymous SNV ENSMUST00000110075:c.G113A:p.G38D 8qB3.3 "Score=0.985269;Name=No.104213,chr8:73657058" NA chr8 74380996 TCAxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 565 7 67 32.637489 0.104046 0.02 3.568846 155 18 4376 491 60 46 0 0 CC 85.95978 286 0 7731 0 KEEP NA Fcho1 YES MNNG_1 chr8 74979071 74979071 C T exonic 1700030K09Rik nonsynonymous SNV NM_028170:c.C1145T:p.T382I exonic 1700030K09Rik nonsynonymous SNV uc009mfy.2:c.C1145T:p.T382I exonic ENSMUSG00000052794 nonsynonymous SNV ENSMUST00000064853:c.C1145T:p.T382I 8qB3.3 NA NA chr8 74979071 CTAxTCG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693577 0.693668 0.999869 55 0 0 32.435686 0.448276 0.02 -0.263054 16 13 451 349 60 60 0 0 CC 6.316375 21 0 584 0 KEEP + 1700030K09Rik YES MNNG_1 chr8 75249575 75249575 C T exonic Sin3b nonsynonymous SNV NM_001113248:c.C346T:p.P116S exonic Sin3b nonsynonymous SNV uc009mgo.3:c.C346T:p.P116S exonic ENSMUSG00000031622 nonsynonymous SNV ENSMUST00000004494:c.C346T:p.P116S 8qB3.3 NA NA chr8 75249575 TCGxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 69 4 0 26.383415 0.478261 0.02 -0.201139 12 11 358 281 60 60 0 0 CC 11.127535 37 0 1023 0 KEEP + Sin3b YES MNNG_1 chr8 83027028 83027028 C T intronic Gypa NA NA intronic Gypa NA NA intronic ENSMUSG00000051839 NA NA 8qC2 NA NA chr8 83027028 CAAxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 0.999999 61 0 0 18.208987 0.368421 0.02 -0.166635 12 7 352 203 60 60 0 0 CC 10.828302 36 0 1011 0 KEEP + Gypa YES MNNG_1 chr8 83324213 83324213 G A exonic Gab1 nonsynonymous SNV NM_021356:c.C154T:p.H52Y exonic Gab1 nonsynonymous SNV uc009mjb.1:c.C154T:p.H52Y exonic ENSMUSG00000031714 nonsynonymous SNV ENSMUST00000034150:c.C154T:p.H52Y 8qC2 NA NA chr8 83324213 CATxATC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 139 0 0 72.753271 0.627907 0.02 -0.385645 16 27 445 722 60 60 0 0 GG 24.955823 83 0 2359 0 KEEP - Gab1 YES MNNG_1 chr8 83509076 83509076 G A exonic Usp38 nonsynonymous SNV NM_027554:c.C2228T:p.A743V exonic Usp38 nonsynonymous SNV uc009mjd.1:c.C2228T:p.A743V exonic ENSMUSG00000038250 nonsynonymous SNV ENSMUST00000042724:c.C2228T:p.A743V 8qC2 NA NA chr8 83509076 GAGxCAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.194847 0.196312 0.99254 27 0 0 26.405894 0.692308 0.02 -0.122528 4 9 118 256 60 60 0 0 GG 2.707118 9 0 251 0 KEEP - Usp38 YES MNNG_1 chr8 84294758 84294758 C T exonic Inpp4b nonsynonymous SNV NM_001024617:c.C307T:p.P103S exonic Inpp4b nonsynonymous SNV uc009mjh.1:c.C307T:p.P103S exonic ENSMUSG00000037940 nonsynonymous SNV ENSMUST00000170005:c.C124T:p.P42S 8qC2 NA NA chr8 84294758 TACxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 68 2 0 15.186762 0.333333 0.02 -0.157865 12 6 352 173 60 60 0 0 CC 11.730664 39 0 1090 0 KEEP + Inpp4b YES MNNG_1 chr8 86462480 86462480 C T exonic Lphn1 nonsynonymous SNV NM_181039:c.C3896T:p.P1299L exonic Lphn1 nonsynonymous SNV uc009mli.2:c.C3383T:p.P1128L exonic ENSMUSG00000013033 nonsynonymous SNV ENSMUST00000131717:c.C3383T:p.P1128L 8qC3 NA NA chr8 86462480 CACxAGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98794 0.987943 0.999997 96 0 0 50.444298 0.35 0.02 1.267369 39 21 1152 573 60 60 0 0 CC 9.023764 30 0 855 0 KEEP + Lphn1 YES MNNG_1 chr8 86603854 86603854 G A exonic Rfx1 nonsynonymous SNV NM_009055:c.G391A:p.V131M exonic Rfx1 nonsynonymous SNV uc009mlt.2:c.G391A:p.V131M exonic ENSMUSG00000031706 nonsynonymous SNV ENSMUST00000005600:c.G391A:p.V131M 8qC3 NA NA chr8 86603854 CAGxTGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 295 5 0 284.293521 0.619048 0.02 3.577883 64 104 1795 2832 60 60 0 0 GG 26.706982 89 0 2378 0 KEEP + Rfx1 YES MNNG_1 chr8 87073380 87073380 G A exonic Cacna1a nonsynonymous SNV NM_001252059:c.G1561A:p.V521I exonic Cacna1a nonsynonymous SNV uc009mmo.1:c.G97A:p.V33I exonic ENSMUSG00000034656 nonsynonymous SNV ENSMUST00000122053:c.G1561A:p.V521I 8qC3 NA NA chr8 87073380 GAAxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 133 0 0 60.696162 0.511111 0.02 -0.403058 22 23 638 633 60 60 0 0 GG 19.2525 64 0 1829 0 KEEP + Cacna1a YES MNNG_1 chr8 87391997 87391997 G A intronic Farsa NA NA intronic Farsa NA NA intronic ENSMUSG00000003808 NA NA 8qC3 NA NA chr8 87391997 TGGxGAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99623 0.996233 0.999997 105 2 0 93.043954 0.507463 0.02 1.188506 33 34 943 970 60 60 0 0 GG 9.023258 30 0 834 0 KEEP + Farsa YES MNNG_1 chr8 87615262 87615262 C T intronic Man2b1 NA NA intronic Man2b1 NA NA intronic ENSMUSG00000005142 NA NA 8qC3 NA NA chr8 87615262 CATxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 150 0 0 62.501651 0.367647 0.02 1.08135 43 25 1263 700 60 60 0 0 CC 17.446001 58 0 1646 0 KEEP + Man2b1 YES MNNG_1 chr8 87823306 87823306 C T intronic Vps35 NA NA intronic Vps35 NA NA intronic ENSMUSG00000031696 NA NA 8qC3 NA NA chr8 87823306 AAAxGTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.486967 0.490544 0.992708 45 2 0 24.321148 0.5 0.02 -0.20124 10 10 250 256 60 60 0 0 CC 3.00482 10 0 248 0 KEEP - Vps35 YES MNNG_1 chr8 88364560 88364560 C T exonic Itfg1 synonymous SNV NM_028007:c.G78A:p.G26G exonic Itfg1 synonymous SNV uc009mqf.2:c.G78A:p.G26G exonic ENSMUSG00000031703 synonymous SNV ENSMUST00000034140:c.G78A:p.G26G 8qC3 NA NA chr8 88364560 AGGxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.99986 45 0 0 25.856487 0.47619 0.02 -0.1929 11 10 312 274 60 60 0 0 CC 5.715033 19 0 532 0 KEEP - Itfg1 YES MNNG_1 chr8 90836140 90836140 G A exonic Adcy7 nonsynonymous SNV NM_001037723:c.G884A:p.S295N exonic Adcy7 nonsynonymous SNV uc009mrh.2:c.G884A:p.S295N exonic ENSMUSG00000031659 nonsynonymous SNV ENSMUST00000098521:c.G884A:p.S295N 8qC3 NA NA chr8 90836140 CCAxCGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 62 0 0 25.762472 0.4 0.02 -0.219254 15 10 444 283 60 60 0 0 GG 6.313094 21 0 578 0 KEEP + Adcy7 YES MNNG_1 chr8 90856966 90856966 C T intronic Brd7 NA NA intronic Brd7 NA NA intronic ENSMUSG00000031660 NA NA 8qC3 NA NA chr8 90856966 GTTxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 88 2 0 19.042736 0.285714 0.02 -0.254311 20 8 570 225 70 60 0 0 CC 14.097523 47 0 1283 0 KEEP - Brd7 YES MNNG_1 chr8 93648454 93648454 C T UTR3 Aktip NA NA UTR3 Aktip NA NA UTR3 ENSMUSG00000031667 NA NA 8qC5 NA NA chr8 93648454 GCAxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 73 0 0 20.099697 0.421053 0.02 -0.16659 11 8 303 219 60 60 0 0 CC 13.232981 44 0 1198 0 KEEP - Aktip YES MNNG_1 chr8 95595732 95595732 C T intronic Ces1b NA NA intronic Ces1b NA NA intronic ENSMUSG00000078964 NA NA 8qC5 NA NA chr8 95595732 AATxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582877 0.58293 0.999909 59 0 0 11.159797 0.192308 0.02 -0.228031 21 5 622 143 60 60 0 0 CC 7.219649 24 0 685 0 KEEP - Ces1b YES MNNG_1 chr8 96511646 96511646 G A exonic Amfr nonsynonymous SNV NM_011787:c.C668T:p.T223I exonic Amfr nonsynonymous SNV uc009mvn.1:c.C668T:p.T223I exonic ENSMUSG00000031751 nonsynonymous SNV ENSMUST00000053766:c.C668T:p.T223I 8qC5 NA NA chr8 96511646 ACGxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 109 1 0 19.152956 0.363636 0.02 -0.192916 14 8 399 216 60 60 0 0 GG 21.053024 70 0 1915 0 KEEP - Amfr YES MNNG_1 chr8 96868669 96868669 C T intronic Slc12a3 NA NA intronic Slc12a3 NA NA intronic ENSMUSG00000031766 NA NA 8qC5 NA NA chr8 96868669 AGTxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 116 0 0 66.47215 0.490196 0.02 1.239196 26 25 769 699 60 60 0 0 CC 13.224645 44 0 1224 0 KEEP + Slc12a3 YES MNNG_1 chr8 97028311 97028311 G A exonic Nlrc5 synonymous SNV NM_001033207:c.G3771A:p.G1257G exonic Nlrc5 synonymous SNV uc009mwj.2:c.G3075A:p.G1025G ncRNA_exonic ENSMUSG00000074151 NA NA 8qC5 NA NA chr8 97028311 CGGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.973958 0.973965 0.999992 115 3 0 90.018223 0.622642 0.02 1.222965 20 33 556 895 60 60 0 0 GG 12.02686 40 0 1089 0 KEEP + Nlrc5 YES MNNG_1 chr8 97389166 97389166 G A intronic Dok4 NA NA intronic Dok4 NA NA intronic "ENSMUSG00000031783,ENSMUSG00000040631" NA NA 8qD1 NA NA chr8 97389166 CAGxCTC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 177 0 0 154.835581 0.625 0.02 0.923522 33 55 959 1539 60 60 0 0 GG 20.745639 69 0 1897 0 KEEP - Dok4 YES MNNG_1 chr8 97532445 97532445 C T intronic Gpr56 NA NA intronic Gpr56 NA NA intronic ENSMUSG00000031785 NA NA 8qD1 NA NA chr8 97532445 GTAxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 46 0 0 11.671184 0.3125 0.02 -0.140243 11 5 310 136 60 60 0 0 CC 7.519814 25 0 700 0 KEEP + Gpr56 YES MNNG_1 chr8 97632227 97632227 G A intronic Kifc3 NA NA intronic Kifc3 NA NA intronic ENSMUSG00000031788 NA NA 8qD1 NA NA chr8 97632227 TTGxGAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 96 0 0 63.058582 0.578947 0.02 -0.333269 16 22 470 638 60 60 0 0 GG 12.633306 42 0 1173 0 KEEP - Kifc3 YES MNNG_1 chr8 97661874 97661874 G A exonic Kifc3 nonsynonymous SNV NM_010631:c.C107T:p.A36V exonic Kifc3 nonsynonymous SNV uc009mxz.1:c.C107T:p.A36V exonic ENSMUSG00000031788 nonsynonymous SNV ENSMUST00000034240:c.C107T:p.A36V 8qD1 NA NA chr8 97661874 GGGxCGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 249 2 0 187.821951 0.615385 0.02 2.357278 45 72 1279 1875 60 60 0 0 GG 26.321596 88 0 2313 0 KEEP - Kifc3 YES MNNG_1 chr8 97867869 97867869 G A exonic Usb1 synonymous SNV NM_133954:c.G522A:p.G174G exonic AA960436 synonymous SNV uc009myg.2:c.G522A:p.G174G exonic ENSMUSG00000031792 synonymous SNV ENSMUST00000034245:c.G522A:p.G174G 8qD1 NA NA chr8 97867869 CGGxCTG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 96 0 0 69.583442 0.530612 0.02 -0.438451 23 26 673 719 60 60 0 0 GG 9.62533 32 0 893 0 KEEP + Usb1 YES MNNG_1 chr8 98069855 98069855 C G exonic Ccdc113 nonsynonymous SNV NM_172914:c.C689G:p.A230G exonic Ccdc113 nonsynonymous SNV uc009myn.1:c.C689G:p.A230G exonic ENSMUSG00000036598 nonsynonymous SNV ENSMUST00000041569:c.C689G:p.A230G 8qD1 NA NA chr8 98069855 ACGxTCA C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 91 1 0 40.125385 0.347826 0.02 -0.420957 30 16 879 454 60 60 0 0 CC 9.024652 30 0 856 0 KEEP + Ccdc113 NO MNNG_1 chr8 98088399 98088399 C T intronic Prss54 NA NA intronic Prss54 NA NA intronic ENSMUSG00000048400 NA NA 8qD1 NA NA chr8 98088399 GAGxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036764 0.036766 0.999957 43 1 0 7.924135 0.5 0.02 -0.052618 3 3 89 83 60 60 0 0 CC 7.774032 26 0 695 0 KEEP - Prss54 YES MNNG_1 chr8 9989316 9989316 C T UTR3 Abhd13 NA NA UTR3 Abhd13 NA NA UTR3 ENSMUSG00000040396 NA NA 8qA1.1 NA NA chr8 9989316 GTCxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291997 0.292001 0.999988 54 0 0 22.098797 0.5 0.02 -0.149095 8 8 236 231 60 60 0 0 CC 8.121652 27 0 758 0 KEEP + Abhd13 YES MNNG_1 chr9 106099206 106099206 G A exonic Ppm1m nonsynonymous SNV NM_026447:c.C730T:p.R244W exonic Ppm1m nonsynonymous SNV uc009rjd.1:c.C562T:p.R188W exonic ENSMUSG00000020253 nonsynonymous SNV ENSMUST00000020489:c.C262T:p.R88W 9qF1 NA NA chr9 106099206 TCCxCAC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 113 0 0 42.840361 0.339623 0.02 1.230582 35 18 948 490 60 60 0 0 GG 14.129738 47 0 1228 0 KEEP - Ppm1m YES MNNG_1 chr9 106810826 106810826 T A exonic Dock3 nonsynonymous SNV NM_153413:c.A4927T:p.T1643S exonic Dock3 nonsynonymous SNV uc012haa.1:c.A625T:p.T209S exonic ENSMUSG00000039716 nonsynonymous SNV ENSMUST00000171095:c.A559T:p.T187S 9qF1 NA NA chr9 106810826 TGGxGCC T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612352 0.612407 0.999909 59 2 0 35.072774 0.5 0.02 -0.236769 13 13 364 367 60 60 0 0 TT 7.217983 24 0 652 0 KEEP - Dock3 NO MNNG_1 chr9 106927688 106927688 T C exonic Dock3 nonsynonymous SNV NM_153413:c.A853G:p.R285G exonic Dock3 nonsynonymous SNV uc009rkv.1:c.A853G:p.R285G exonic ENSMUSG00000039716 nonsynonymous SNV ENSMUST00000044532:c.A853G:p.R285G 9qF1 NA NA chr9 106927688 CTCxCTT T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 54 0 0 16.010027 0.428571 0.02 -0.140315 8 6 225 173 70 60 0 0 TT 9.625384 32 0 894 0 KEEP - Dock3 NO MNNG_1 chr9 108307366 108307366 G A exonic Ccdc36 nonsynonymous SNV NM_001135198:c.C1453T:p.L485F exonic Ccdc36 nonsynonymous SNV uc009rpl.2:c.C1453T:p.L485F exonic ENSMUSG00000047220 nonsynonymous SNV ENSMUST00000076592:c.C1423T:p.L475F 9qF2 NA NA chr9 108307366 TGAxGGG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 93 0 0 56.34433 0.456522 0.02 -0.412167 25 21 723 601 60 60 0 0 GG 11.128512 37 0 1034 0 KEEP - Ccdc36 YES MNNG_1 chr9 108389194 108389194 G A exonic Lamb2 synonymous SNV NM_008483:c.G3087A:p.G1029G exonic Lamb2 synonymous SNV uc009rpr.2:c.G3087A:p.G1029G exonic ENSMUSG00000052911 synonymous SNV ENSMUST00000065014:c.G3087A:p.G1029G 9qF2 NA NA chr9 108389194 TGGxCAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996231 0.996233 0.999999 119 3 0 88.138852 0.5 0.02 1.090237 34 34 977 924 60 60 0 0 GG 10.527076 35 0 966 0 KEEP + Lamb2 YES MNNG_1 chr9 108485185 108485185 G A exonic P4htm synonymous SNV NM_028944:c.C720T:p.D240D exonic P4htm synonymous SNV uc009rqk.1:c.C720T:p.D240D exonic ENSMUSG00000006675 synonymous SNV ENSMUST00000006853:c.C720T:p.D240D 9qF2 NA NA chr9 108485185 ACCxTCA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 249 2 0 14.627034 0.105263 0.02 1.011649 68 8 1728 219 60 60 0 0 GG 34.768739 125 1 3138 26 KEEP - P4htm YES MNNG_1 chr9 109338730 109338730 G C exonic Fbxw16 nonsynonymous SNV NM_177070:c.C1246G:p.L416V exonic Fbxw16 nonsynonymous SNV uc009rsj.1:c.C1246G:p.L416V exonic ENSMUSG00000074062 nonsynonymous SNV ENSMUST00000084984:c.C1246G:p.L416V 9qF2 "Score=0.905991;Name=No.105626,chr9:109380665" NA chr9 109338730 TTAxCAG G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 186 0 0 20.897108 0.272727 0.02 -0.306956 24 9 711 250 60 60 0 0 GG 39.089276 130 0 3700 0 KEEP - Fbxw16 NO MNNG_1 chr9 111266530 111266530 T A exonic Trank1 nonsynonymous SNV NM_001164659:c.T1670A:p.L557H exonic Trank1 nonsynonymous SNV uc009rvt.2:c.T1670A:p.L557H exonic ENSMUSG00000062296 nonsynonymous SNV ENSMUST00000078626:c.T1670A:p.L557H 9qF3 NA NA chr9 111266530 TTCxTCT T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 174 4 0 11.695484 0.133333 0.02 -0.394614 39 6 1113 165 60 60 0 0 TT 31.580255 105 0 2909 0 KEEP + Trank1 NO MNNG_1 chr9 118465194 118465194 G A exonic Golga4 synonymous SNV NM_018748:c.G2265A:p.E755E exonic Golga4 synonymous SNV uc009rzv.1:c.G195A:p.E65E exonic ENSMUSG00000038708 synonymous SNV ENSMUST00000084820:c.G2265A:p.E755E 9qF3 NA NA chr9 118465194 TGAxGTT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.64127 0.641347 0.999879 55 2 0 42.919668 0.571429 0.02 -0.245509 12 16 352 436 60 60 0 0 GG 6.604227 22 0 597 0 KEEP + Golga4 YES MNNG_1 chr9 119079721 119079721 C T exonic Slc22a14 synonymous SNV NM_001037749:c.G1521A:p.V507V exonic Slc22a14 synonymous SNV uc009sak.1:c.G1521A:p.V507V exonic ENSMUSG00000070280 synonymous SNV ENSMUST00000170400:c.G1521A:p.V507V 9qF3 NA NA chr9 119079721 AGCxACC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 78 0 0 23.804947 0.322581 0.02 -0.271852 21 10 611 275 60 60 0 0 CC 9.925628 33 0 933 0 KEEP - Slc22a14 YES MNNG_1 chr9 121677156 121677156 T A UTR3 Zfp651 NA NA UTR3 Zfp651 NA NA UTR3 ENSMUSG00000013419 NA NA 9qF4 NA NA chr9 121677156 TCCxGGC T A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.985529 0.986153 0.999366 84 3 0 83.452401 0.508475 0.02 1.276135 29 30 814 869 60 60 0 0 TT 5.110668 17 0 454 0 KEEP + Zfp651 NO MNNG_1 chr9 19245531 19245531 C T exonic Olfr849 nonsynonymous SNV NM_146527:c.C173T:p.P58L exonic Olfr849 nonsynonymous SNV uc009ohj.1:c.C173T:p.P58L exonic ENSMUSG00000052182 nonsynonymous SNV ENSMUST00000063923:c.C173T:p.P58L 9qA2 NA NA chr9 19245531 CACxCAT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 146 3 0 28.786568 0.366667 0.02 -0.263083 19 11 545 321 60 60 0 0 CC 27.674147 92 0 2590 0 KEEP + Olfr849 YES MNNG_1 chr9 19688054 19688054 A C exonic Olfr862 nonsynonymous SNV NM_146562:c.T694G:p.L232V exonic Olfr862 nonsynonymous SNV uc009ohx.1:c.T694G:p.L232V exonic ENSMUSG00000063842 nonsynonymous SNV ENSMUST00000073765:c.T694G:p.L232V 9qA3 NA NA chr9 19688054 CTAxCAA A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 99 0 0 8.864026 0.210526 0.02 -0.166567 15 4 408 112 60 60 0 0 AA 20.15136 67 0 1843 0 KEEP - Olfr862 NO MNNG_1 chr9 20065129 20065129 C T exonic Olfr872 nonsynonymous SNV NM_146560:c.C844T:p.P282S exonic Olfr872 nonsynonymous SNV uc009oif.2:c.C844T:p.P282S exonic ENSMUSG00000066897 nonsynonymous SNV ENSMUST00000086474:c.C844T:p.P282S 9qA3 NA NA chr9 20065129 TCCxCTA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 65 0 0 28.19854 0.555556 0.02 -0.157861 8 10 233 288 60 60 0 0 CC 12.032132 40 0 1125 0 KEEP + Olfr872 YES MNNG_1 chr9 20834820 20834820 C T intronic Icam4 NA NA intronic Icam4 NA NA ncRNA_exonic ENSMUSG00000091118 NA NA 9qA3 NA NA chr9 20834820 TGCxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 437 6 0 181.920145 0.375661 0.02 3.714582 118 71 3449 2024 60 60 0 0 CC 51.696199 172 0 4734 0 KEEP + Icam4 YES MNNG_1 chr9 20877655 20877655 C T ncRNA_intronic Raver1-fdx1l NA NA UTR3 Raver1 NA NA intronic ENSMUSG00000079677 NA NA 9qA3 NA NA chr9 20877655 GAGxCGG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 157 1 0 104.594435 0.506494 0.02 1.012872 38 39 1041 1091 60 60 0 0 CC 20.749531 69 0 1891 0 KEEP - Raver1-fdx1l YES MNNG_1 chr9 20913253 20913253 C T exonic Tyk2 nonsynonymous SNV NM_001205312:c.G3052A:p.A1018T exonic Tyk2 nonsynonymous SNV uc009oke.1:c.G2983A:p.A995T exonic ENSMUSG00000032175 nonsynonymous SNV ENSMUST00000001036:c.G3052A:p.A1018T 9qA3 NA NA chr9 20913253 GCGxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 158 1 0 92.022394 0.420455 0.02 0.923831 51 37 1474 1004 60 60 0 0 CC 15.933164 53 0 1434 0 KEEP - Tyk2 YES MNNG_1 chr9 21085577 21085577 C T exonic Kri1 nonsynonymous SNV NM_145416:c.G718A:p.D240N exonic Kri1 nonsynonymous SNV uc012gpc.1:c.G718A:p.D240N exonic ENSMUSG00000035047 nonsynonymous SNV ENSMUST00000038671:c.G736A:p.D246N 9qA3 NA NA chr9 21085577 TGTxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 141 2 0 83.307778 0.576923 0.02 1.230543 22 30 643 844 60 60 0 0 CC 18.049559 60 0 1714 0 KEEP - Kri1 YES MNNG_1 chr9 21817101 21817101 C T intronic Prkcsh NA NA intronic Prkcsh NA NA intronic ENSMUSG00000003402 NA NA 9qA3 NA NA chr9 21817101 TCAxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 163 2 0 97.24839 0.463415 0.02 0.97661 44 38 1199 1037 60 60 0 0 CC 17.134935 57 0 1532 0 KEEP + Prkcsh YES MNNG_1 chr9 21909866 21909866 C A exonic Cnn1 nonsynonymous SNV NM_009922:c.C305A:p.P102H exonic Cnn1 nonsynonymous SNV uc009onv.2:c.C305A:p.P102H exonic ENSMUSG00000001349 nonsynonymous SNV ENSMUST00000001384:c.C305A:p.P102H 9qA3 NA NA chr9 21909866 AACxCCA C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 142 1 0 24.302575 0.196721 0.02 1.125633 49 12 1423 317 60 60 0 0 CC 19.231292 64 0 1759 0 KEEP + Cnn1 NO MNNG_1 chr9 22064196 22064196 C T intronic Zfp599 NA NA intronic Zfp599 NA NA intronic ENSMUSG00000062794 NA NA 9qA3 NA NA chr9 22064196 AGAxTCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 215 2 0 92.565566 0.440476 0.02 0.915599 47 37 1328 1000 60 60 0 0 CC 27.06054 90 0 2470 0 KEEP - Zfp599 YES MNNG_1 chr9 24578295 24578295 C T UTR5 Tbx20 NA NA UTR5 Tbx20 NA NA UTR5 ENSMUSG00000031965 NA NA 9qA4 NA NA chr9 24578295 TTCxCAG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999299 0.999407 0.999892 135 1 0 140.266509 0.604938 0.02 1.074506 32 49 920 1405 60 60 0 0 CC 6.916958 23 0 633 0 KEEP - Tbx20 YES MNNG_1 chr9 26786741 26786741 C T intronic Acad8 NA NA intronic Acad8 NA NA intronic ENSMUSG00000031969 NA NA 9qA4 NA NA chr9 26786741 CCCxAAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 364 4 0 127.903793 0.358621 0.02 2.297935 93 52 2736 1442 60 60 0 0 CC 46.92121 156 0 4390 0 KEEP - Acad8 YES MNNG_1 chr9 26798915 26798915 C T exonic Acad8 nonsynonymous SNV NM_025862:c.G284A:p.G95E exonic Acad8 nonsynonymous SNV uc009opy.1:c.G284A:p.G95E exonic ENSMUSG00000031969 nonsynonymous SNV ENSMUST00000060513:c.G284A:p.G95E 9qA4 NA NA chr9 26798915 GATxCAC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 124 2 0 60.185689 0.46 0.02 1.247971 27 23 792 642 60 60 0 0 CC 15.641552 52 0 1468 0 KEEP - Acad8 YES MNNG_1 chr9 27204736 27204736 C T exonic Spata19 nonsynonymous SNV NM_029299:c.C110T:p.S37F exonic Spata19 nonsynonymous SNV uc009oqo.1:c.C110T:p.S37F exonic ENSMUSG00000031991 nonsynonymous SNV ENSMUST00000034473:c.C110T:p.S37F 9qA4 NA NA chr9 27204736 TATxCGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490511 0.490544 0.999931 60 0 0 24.272914 0.454545 0.02 -0.201173 12 10 321 261 60 60 0 0 CC 7.456983 25 0 671 0 KEEP + Spata19 YES MNNG_1 chr9 30769422 30769422 C T exonic Adamts8 synonymous SNV NM_013906:c.C2337T:p.I779I exonic Adamts8 synonymous SNV uc012gpt.1:c.C1182T:p.I394I exonic ENSMUSG00000031994 synonymous SNV ENSMUST00000068135:c.C2337T:p.I779I 9qA4 NA NA chr9 30769422 CATxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 80 4 0 57.117815 0.538462 0.02 -0.359521 18 21 534 588 60 60 0 0 CC 9.022516 30 0 844 0 KEEP + Adamts8 YES MNNG_1 chr9 30939149 30939149 C T exonic St14 synonymous SNV NM_011176:c.G63A:p.K21K exonic St14 synonymous SNV uc009ori.1:c.G63A:p.K21K exonic ENSMUSG00000031995 synonymous SNV ENSMUST00000034478:c.G63A:p.K21K 9qA4 NA NA chr9 30939149 GTAxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 107 1 0 70.131522 0.482143 0.02 1.195393 29 27 841 741 60 60 0 0 CC 8.421327 28 0 769 0 KEEP - St14 YES MNNG_1 chr9 34823991 34823991 C T intronic Kirrel3 NA NA intronic Kirrel3 NA NA intronic ENSMUSG00000032036 NA NA 9qA4 NA NA chr9 34823991 TCCxTCT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 67 0 0 38.030414 0.56 0.02 -0.219147 11 14 306 388 60 60 0 0 CC 9.624636 32 0 891 0 KEEP + Kirrel3 YES MNNG_1 chr9 38324316 38324316 C T exonic Olfr908 unknown UNKNOWN exonic Olfr908 synonymous SNV uc009owp.1:c.C696T:p.G232G ncRNA_exonic ENSMUSG00000063732 NA NA 9qA5.1 NA NA chr9 38324316 GGGxAGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 67 3 0 20.409508 0.470588 0.02 -0.149075 9 8 260 217 60 60 0 0 CC 12.925492 43 0 1168 0 KEEP + Olfr908 YES MNNG_1 chr9 39813663 39813663 C T exonic Olfr980 synonymous SNV NM_147106:c.G870A:p.R290R exonic Olfr980 synonymous SNV uc009oyy.2:c.G870A:p.R290R exonic ENSMUSG00000060254 synonymous SNV ENSMUST00000073932:c.G870A:p.R290R 9qA5.1 NA NA chr9 39813663 GTTxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.934492 0.934492 1 169 3 0 59.64554 0.5 0.02 -0.40342 22 22 647 624 60 60 0 0 CC 29.781797 99 0 2828 0 KEEP - Olfr980 YES MNNG_1 chr9 47597761 47597761 A G intronic Cadm1 NA NA intronic Cadm1 NA NA intronic ENSMUSG00000032076 NA NA 9qA5.3 NA NA chr9 47597761 CTGxCTG A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077168 0.077336 0.997832 26 0 0 10.222037 0.444444 0.02 -0.078915 5 4 140 110 60 60 0 0 AA 4.810241 16 0 425 0 KEEP + Cadm1 NO MNNG_1 chr9 62629820 62629820 C T exonic Itga11 synonymous SNV NM_176922:c.C3459T:p.L1153L exonic Itga11 synonymous SNV uc009qal.2:c.C3459T:p.L1153L exonic ENSMUSG00000032243 synonymous SNV ENSMUST00000034774:c.C3459T:p.L1153L 9qB NA NA chr9 62629820 CCTxTTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 179 4 0 110.797511 0.456522 0.02 0.879922 50 42 1410 1183 60 60 0 0 CC 15.642398 52 0 1480 0 KEEP + Itga11 YES MNNG_1 chr9 62706009 62706009 C T ncRNA_intronic Gm10653 NA NA intronic Calml4 NA NA ncRNA_intronic ENSMUSG00000074250 NA NA 9qB NA NA chr9 62706009 CCCxCGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 217 1 0 101.929839 0.378641 0.02 2.683815 64 39 1838 1130 60 60 0 0 CC 22.511549 75 0 2057 0 KEEP - Gm10653 YES MNNG_1 chr9 62768226 62768226 C T intronic Pias1 NA NA intronic Pias1 NA NA intronic ENSMUSG00000032405 NA NA 9qB NA NA chr9 62768226 CACxTAA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 89 2 0 26.590978 0.416667 0.02 -0.210476 14 10 403 289 60 60 0 0 CC 16.242892 54 0 1519 0 KEEP - Pias1 YES MNNG_1 chr9 66314380 66314380 C T exonic Herc1 nonsynonymous SNV NM_145617:c.C9493T:p.P3165S exonic Herc1 nonsynonymous SNV uc009qev.2:c.C9493T:p.P3165S exonic ENSMUSG00000038664 nonsynonymous SNV ENSMUST00000042824:c.C9493T:p.P3165S 9qC NA NA chr9 66314380 AATxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.83568 0.835716 0.999957 71 2 0 48.861587 0.5 0.02 -0.324171 18 18 518 511 60 60 0 0 CC 7.821476 26 0 744 0 KEEP + Herc1 YES MNNG_1 chr9 66327302 66327302 C T exonic Herc1 nonsynonymous SNV NM_145617:c.C11390T:p.P3797L exonic Herc1 nonsynonymous SNV uc009qev.2:c.C11390T:p.P3797L exonic ENSMUSG00000038664 nonsynonymous SNV ENSMUST00000042824:c.C11390T:p.P3797L 9qC NA NA chr9 66327302 TTCxAGA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09972 0.099721 0.999988 44 0 0 6.978399 0.3 0.02 -0.087695 7 3 203 82 60 60 0 0 CC 8.122282 27 0 771 0 KEEP + Herc1 YES MNNG_1 chr9 66819118 66819118 C A exonic Lactb nonsynonymous SNV NM_030717:c.G474T:p.M158I exonic Lactb nonsynonymous SNV uc009qfn.1:c.G474T:p.M158I exonic ENSMUSG00000032370 nonsynonymous SNV ENSMUST00000034929:c.G474T:p.M158I 9qC NA NA chr9 66819118 TCTxATG C A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.92664 0.92664 1 113 0 0 27.829397 0.272727 0.02 -0.394644 32 12 946 333 60 60 0 0 CC 16.245413 54 0 1560 0 KEEP - Lactb NO MNNG_1 chr9 71697568 71697568 C T intronic Tcf12 NA NA intronic Tcf12 NA NA intronic ENSMUSG00000032228 NA NA 9qD NA NA chr9 71697568 AGAxCCA C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 226 6 0 69.495412 0.4 0.02 1.072666 42 28 1172 766 60 60 0 0 CC 35.188741 117 0 3203 0 KEEP - Tcf12 YES MNNG_1 chr9 73779547 73779547 C T exonic Unc13c nonsynonymous SNV NM_001081153:c.G1828A:p.E610K exonic Unc13c nonsynonymous SNV uc009qrb.1:c.G1828A:p.E610K exonic ENSMUSG00000062151 nonsynonymous SNV ENSMUST00000075245:c.G1828A:p.E610K 9qD NA NA chr9 73779547 TTTxAGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 293 3 0 109.20813 0.423077 0.02 2.460922 60 44 1767 1190 60 60 0 0 CC 44.822807 149 0 4279 0 KEEP - Unc13c YES MNNG_1 chr9 74801682 74801682 C T intronic Fam214a NA NA intronic BC031353 NA NA intronic ENSMUSG00000034858 NA NA 9qD NA NA chr9 74801682 TCTxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 117 0 0 33.944253 0.419355 0.02 -0.271872 18 13 531 369 60 60 0 0 CC 20.455795 68 0 1939 0 KEEP + Fam214a YES MNNG_1 chr9 7644007 7644007 G C exonic Mmp20 nonsynonymous SNV NM_013903:c.G695C:p.G232A exonic Mmp20 nonsynonymous SNV uc009ocu.1:c.G695C:p.G232A exonic ENSMUSG00000018620 nonsynonymous SNV ENSMUST00000034487:c.G695C:p.G232A 9qA1 NA NA chr9 7644007 TGGxCCT G C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 71 0 0 6.561598 0.15 0.02 -0.175412 17 3 503 88 60 60 0 0 GG 12.917377 43 0 1159 0 KEEP + Mmp20 NO MNNG_1 chr9 79666907 79666907 C T exonic Filip1 nonsynonymous SNV NM_001081243:c.G2236A:p.V746I exonic Filip1 nonsynonymous SNV uc009quy.1:c.G2236A:p.V746I exonic ENSMUSG00000034898 nonsynonymous SNV ENSMUST00000093811:c.G2236A:p.V746I 9qE1 NA NA chr9 79666907 CGAxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 160 0 0 104.308436 0.519481 0.02 1.011363 37 40 1044 1084 60 60 0 0 CC 20.752238 69 0 1890 0 KEEP - Filip1 YES MNNG_1 chr9 94425020 94425020 C T exonic 1190002N15Rik nonsynonymous SNV NM_001033145:c.G752A:p.S251N exonic 1190002N15Rik nonsynonymous SNV uc009rax.1:c.G752A:p.S251N exonic ENSMUSG00000045414 nonsynonymous SNV ENSMUST00000061904:c.G752A:p.S251N 9qE3.3 NA NA chr9 94425020 TAAxTCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 80 0 0 20.897234 0.5 0.02 -0.149077 8 8 241 219 60 60 0 0 CC 13.83587 46 0 1293 0 KEEP - 1190002N15Rik YES MNNG_1 chr9 95643731 95643731 C T exonic Trpc1 nonsynonymous SNV NM_011643:c.G260A:p.S87N exonic Trpc1 nonsynonymous SNV uc009rbh.1:c.G260A:p.S87N exonic ENSMUSG00000032839 nonsynonymous SNV ENSMUST00000053785:c.G260A:p.S87N 9qE3.3 NA NA chr9 95643731 GAAxTGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999999 55 0 0 12.422294 0.357143 0.02 -0.12278 9 5 265 140 60 60 0 0 CC 10.828166 36 0 1002 0 KEEP - Trpc1 YES MNNG_1 chr9 9704794 9704794 C T exonic Cntn5 nonsynonymous SNV NM_001033359:c.G1999A:p.G667R exonic Cntn5 nonsynonymous SNV uc009odr.2:c.G1999A:p.G667R exonic ENSMUSG00000039488 nonsynonymous SNV ENSMUST00000162484:c.G1999A:p.G667R 9qA1 NA NA chr9 9704794 CTCxCTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 44 0 0 29.35727 0.458333 0.02 -0.219232 13 11 370 313 60 60 0 0 CC 5.413885 18 0 496 0 KEEP - Cntn5 YES MNNG_1 chrM 11978 11978 C T intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic BC071253 NA NA exonic ENSMUSG00000064367 unknown UNKNOWN NA NA NA chrM 11978 AAGxTTC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1627 15 0 185.9971 0.166667 0.02 13.737314 460 92 13256 2500 60 60 0 0 CC 298.336039 992 0 27735 0 KEEP - NONE YES MNNG_1 chrM 12649 12649 C T intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic "BC071253,Cytb" NA NA exonic ENSMUSG00000064367 unknown UNKNOWN NA NA NA chrM 12649 TTGxCTT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1959 24 0 175.109286 0.108108 0.02 20.954534 792 96 22737 2612 60 60 0 0 CC 296.944048 988 0 26910 0 KEEP - NONE YES MNNG_1 chrM 13885 13885 C T intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic "BC071253,Cytb" NA NA exonic ENSMUSG00000064368 unknown UNKNOWN NA NA NA chrM 13885 CATxCCC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1532 9 0 132.023657 0.141434 0.02 12.490779 431 71 12386 1868 60 60 0 0 CC 294.435357 981 0 26754 0 KEEP - NONE YES MNNG_1 chrM 3133 3133 C T intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic AK018753 NA NA exonic ENSMUSG00000064341 unknown UNKNOWN NA NA NA chrM 3133 ACTxACT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 2000 10 0 82.226225 0.062053 0.02 21.278884 786 52 22722 1417 60 60 0 0 CC 295.326862 991 2 25902 15 KEEP + NONE YES MNNG_1 chrX 10156540 10156540 G A exonic Tspan7 nonsynonymous SNV NM_019634:c.G181A:p.V61M exonic Tspan7 nonsynonymous SNV uc009sql.1:c.G181A:p.V61M exonic ENSMUSG00000058254 nonsynonymous SNV ENSMUST00000076354:c.G181A:p.V61M XqA1.1 NA NA chrX 10156540 TATxTGC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291966 0.292001 0.999879 44 0 0 28.243973 0.647059 0.02 -0.149025 6 11 175 278 60 60 0 0 GG 6.617313 22 0 613 0 KEEP + Tspan7 YES MNNG_1 chrX 148637566 148637566 C T exonic Iqsec2 nonsynonymous SNV NM_001005475:c.C238T:p.P80S exonic Iqsec2 nonsynonymous SNV uc009upy.1:c.C853T:p.P285S exonic ENSMUSG00000041115 nonsynonymous SNV ENSMUST00000080074:c.C823T:p.P275S XqF3 NA NA chrX 148637566 CCCxCTG C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 84 1 0 26.13394 0.255814 0.02 -0.376946 32 11 898 315 60 60 0 0 CC 7.350867 29 1 765 12 KEEP + Iqsec2 YES MNNG_1 chrX 148683173 148683173 A C intronic Kdm5c NA NA intronic Kdm5c NA NA intronic ENSMUSG00000025332 NA NA XqF3 NA NA chrX 148683173 AGGxTAA A C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 111 0 0 70.806862 0.595238 0.02 -0.385795 17 25 466 712 60 60 1 0 AA 17.744802 59 0 1614 0 KEEP + Kdm5c NO MNNG_1 chrX 148781531 148781531 C G exonic Gpr173 nonsynonymous SNV NM_027543:c.G488C:p.G163A exonic Gpr173 nonsynonymous SNV uc009uqh.1:c.G488C:p.G163A exonic ENSMUSG00000056679 nonsynonymous SNV ENSMUST00000165354:c.G488C:p.G163A XqF3 NA NA chrX 148781531 GTGxCCA C G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800211 0.800245 0.999957 67 0 0 16.23531 0.205882 0.02 -0.306889 27 7 779 204 60 60 0 0 CC 7.820222 26 0 720 0 KEEP - Gpr173 NO MNNG_1 chrX 166414822 166414822 T C ncRNA_intronic G530011O06Rik NA NA ncRNA_intronic "Fxy,G530011O06Rik" NA NA ncRNA_intronic ENSMUSG00000072844 NA NA XqF5 NA NA chrX 166414822 AAAxTCA T C Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 86 0 0 14.687247 0.333333 0.02 -0.157832 12 6 325 168 60 60 0 0 TT 17.743169 59 0 1588 0 KEEP - G530011O06Rik NO MNNG_1 chrX 20076626 20076626 G A exonic Phf16 synonymous SNV NM_199317:c.G762A:p.Q254Q exonic Phf16 synonymous SNV uc009stb.1:c.G762A:p.Q254Q exonic ENSMUSG00000037315 synonymous SNV ENSMUST00000043693:c.G762A:p.Q254Q XqA1.3 NA NA chrX 20076626 ACAxTGT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 99 0 0 56.584342 0.617647 0.02 -0.298108 13 21 370 564 60 60 0 0 GG 13.836642 46 0 1292 0 KEEP + Phf16 YES MNNG_1 chrX 33738796 33738796 G A UTR3 Zcchc12 NA NA UTR3 Zcchc12 NA NA UTR3 ENSMUSG00000036699 NA NA XqA3.3 NA NA chrX 33738796 GTGxCCT G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 72 0 0 49.759125 0.642857 0.02 -0.245445 10 18 259 491 60 60 0 0 GG 10.481622 35 0 951 0 KEEP + Zcchc12 YES MNNG_1 chrX 35180735 35180735 G A exonic Rhox6 nonsynonymous SNV NM_008955:c.G275A:p.G92E exonic Rhox6 nonsynonymous SNV uc009szg.1:c.G275A:p.G92E exonic ENSMUSG00000006200 nonsynonymous SNV ENSMUST00000006362:c.G275A:p.G92E XqA3.3 "Score=0.983845;Name=No.112676,chrX:35233634" NA chrX 35180735 AGGxAGA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 287 3 23 90.421936 0.507463 0.02 1.099134 33 34 974 944 60 60 0 0 GG 44.818295 149 0 4211 0 KEEP + Rhox6 YES MNNG_1 chrX 3546323 3546323 C T UTR3 "Gm21637,Spin2-ps1" NA NA UTR3 4930408F14Rik NA NA downstream ENSMUSG00000080300 NA NA XqA1.1 "Score=0.988664;Name=No.106771,chrX:30212328" NA chrX 3546323 ATGxCGT C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 743 5 78 55.568168 0.175 0.02 3.674229 132 28 3775 744 40 26 0 0 CC 132.942882 452 1 12418 28 KEEP - Gm21637 YES MNNG_1 chrX 47141304 47141304 G A intronic Igsf1 NA NA intronic Igsf1 NA NA intronic ENSMUSG00000031111 NA NA XqA5 NA NA chrX 47141304 CCTxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 287 0 0 165.019886 0.496241 0.02 2.019787 67 66 1940 1736 60 60 0 0 GG 33.085268 110 0 3066 0 KEEP - Igsf1 YES MNNG_1 chrX 51054787 51054787 G A exonic 1700013H16Rik synonymous SNV NM_001200013:c.C234T:p.D78D exonic 1700013H16Rik synonymous SNV uc009tfj.2:c.C234T:p.D78D exonic ENSMUSG00000054727 synonymous SNV ENSMUST00000067940:c.C234T:p.D78D XqA5 NA NA chrX 51054787 AGGxTCC G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999997 50 2 0 12.372526 0.5 0.02 -0.087676 5 5 141 130 60 60 0 0 GG 9.577629 32 0 842 0 KEEP - 1700013H16Rik YES MNNG_1 chrX 6168108 6168108 G A exonic Shroom4 nonsynonymous SNV NM_001040459:c.G2903A:p.G968E exonic Shroom4 nonsynonymous SNV uc009skz.1:c.G2555A:p.G852E exonic ENSMUSG00000068270 nonsynonymous SNV ENSMUST00000089520:c.G2555A:p.G852E XqA1.1 NA NA chrX 6168108 CAGxAAA G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999998 61 2 0 30.872485 0.55 0.02 -0.184105 9 11 256 316 60 60 0 0 GG 10.227395 34 0 959 0 KEEP + Shroom4 YES MNNG_1 chrX 69798038 69798038 A G exonic Gabra3 nonsynonymous SNV NM_008067:c.T118C:p.F40L exonic Gabra3 nonsynonymous SNV uc009tkp.2:c.T118C:p.F40L exonic ENSMUSG00000031343 nonsynonymous SNV ENSMUST00000055966:c.T118C:p.F40L XqA7.3 NA NA chrX 69798038 CAAxGTC A G Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 114 2 0 8.437674 0.16 0.02 -0.219246 21 4 606 113 60 60 0 0 AA 19.851471 66 0 1841 0 KEEP - Gabra3 NO MNNG_1 chrX 71039904 71039904 C T exonic Pdzd4 synonymous SNV NM_001029868:c.G2136A:p.Q712Q exonic Pdzd4 synonymous SNV uc009tmu.1:c.G1791A:p.Q597Q exonic ENSMUSG00000002006 synonymous SNV ENSMUST00000114438:c.G1791A:p.Q597Q XqA7.3 NA NA chrX 71039904 CTGxTGC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 153 1 0 126.933664 0.55814 0.02 0.923741 38 48 1080 1297 60 60 0 0 CC 15.925392 53 0 1453 0 KEEP - Pdzd4 YES MNNG_1 chrX 7515408 7515408 G A exonic Hdac6 nonsynonymous SNV NM_001130416:c.C1265T:p.S422F exonic Hdac6 nonsynonymous SNV uc009snh.2:c.C203T:p.S68F exonic ENSMUSG00000031161 nonsynonymous SNV ENSMUST00000033501:c.C1265T:p.S422F XqA1.1 NA NA chrX 7515408 ATGxAAG G A Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 162 0 0 157.808601 0.654762 0.02 0.949809 29 55 857 1551 60 70 0 0 GG 17.747291 59 0 1666 0 KEEP - Hdac6 YES MNNG_1 chrX 96662803 96662803 C T exonic Pja1 nonsynonymous SNV NM_001083110:c.G838A:p.A280T exonic Pja1 nonsynonymous SNV uc009tvl.1:c.G838A:p.A280T exonic ENSMUSG00000034403 nonsynonymous SNV ENSMUST00000036354:c.G838A:p.A280T XqC3 NA NA chrX 96662803 TGGxATC C T Ot5149_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index32_CACTCA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 175 4 0 99.121664 0.513158 0.02 0.922193 37 39 1078 1034 60 60 0 0 CC 21.957728 73 0 2047 0 KEEP - Pja1 YES MNNG_2 chr10 109201973 109201973 G A exonic Nav3 nonsynonymous SNV NM_001081035:c.C3848T:p.T1283I exonic Nav3 nonsynonymous SNV uc007gzk.1:c.C1628T:p.T543I exonic ENSMUSG00000020181 nonsynonymous SNV ENSMUST00000161582:c.C1679T:p.T560I 10qD1 NA NA chr10 109201973 GAGxTAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 153 2 0 71.601068 0.422535 0.02 1.162393 41 30 1128 783 60 60 0 0 GG 18.045786 60 0 1647 0 KEEP - Nav3 YES MNNG_2 chr10 114838926 114838926 C T intronic Zfc3h1 NA NA intronic Zfc3h1 NA NA intronic ENSMUSG00000034163 NA NA 10qD2 NA NA chr10 114838926 CAAxTAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322772 0.322807 0.999892 44 0 0 23.172825 0.5 0.02 -0.157822 9 9 246 243 60 60 0 0 CC 6.918939 23 0 658 0 KEEP + Zfc3h1 YES MNNG_2 chr10 117066752 117066752 C T intronic Cpm NA NA intronic Cpm NA NA intronic ENSMUSG00000020183 NA NA 10qD2 NA NA chr10 117066752 CAGxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 253 0 0 136.244901 0.469565 0.02 2.26726 61 54 1692 1450 60 60 0 0 CC 30.677594 102 0 2835 0 KEEP + Cpm YES MNNG_2 chr10 118298900 118298900 C T intronic Dyrk2 NA NA intronic Dyrk2 NA NA UTR3 ENSMUSG00000050709 NA NA 10qD2 NA NA chr10 118298900 GAAxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 92 0 0 20.545021 0.444444 0.02 -0.166611 10 8 285 221 60 60 0 0 CC 18.951207 63 0 1787 0 KEEP - Dyrk2 YES MNNG_2 chr10 126488178 126488178 C T exonic Cyp27b1 synonymous SNV NM_010009:c.C1206T:p.P402P exonic Cyp27b1 synonymous SNV uc007hhs.2:c.C1029T:p.P343P exonic ENSMUSG00000006724 synonymous SNV ENSMUST00000006907:c.C1029T:p.P343P 10qD3 NA NA chr10 126488178 TCCxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 64 0 0 29.423061 0.5 0.02 -0.192925 11 11 313 308 60 60 0 0 CC 10.181553 34 0 935 0 KEEP + Cyp27b1 YES MNNG_2 chr10 126741278 126741278 T C exonic Mars nonsynonymous SNV NM_001003913:c.A1262G:p.D421G exonic Mars nonsynonymous SNV uc007hiz.2:c.A1262G:p.D421G exonic ENSMUSG00000040354 nonsynonymous SNV ENSMUST00000037290:c.A1262G:p.D421G 10qD3 NA NA chr10 126741278 CTGxCAC T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 66 0 0 26.064038 0.4 0.02 -0.219213 15 10 406 286 60 60 0 0 TT 8.721957 29 0 792 0 KEEP - Mars NO MNNG_2 chr10 126929617 126929617 C T intronic R3hdm2 NA NA intronic R3hdm2 NA NA intronic ENSMUSG00000025404 NA NA 10qD3 NA NA chr10 126929617 CTGxTAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 107 1 0 38.660814 0.410256 0.02 -0.359493 23 16 666 425 60 60 0 0 CC 14.437203 48 0 1341 0 KEEP + R3hdm2 YES MNNG_2 chr10 127560853 127560853 C T exonic Baz2a nonsynonymous SNV NM_054078:c.C4061T:p.S1354F exonic Baz2a nonsynonymous SNV uc007hll.1:c.C1007T:p.S336F exonic ENSMUSG00000040054 nonsynonymous SNV ENSMUST00000045621:c.C4061T:p.S1354F 10qD3 NA NA chr10 127560853 GTTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.712749 0.717315 0.993634 45 0 0 30.355852 0.4 0.02 -0.271828 18 12 513 334 60 60 0 0 CC 3.608632 12 0 334 0 KEEP + Baz2a YES MNNG_2 chr10 127763206 127763206 C T exonic Cnpy2 synonymous SNV NM_019953:c.C291T:p.D97D exonic Cnpy2 synonymous SNV uc007hmi.1:c.C291T:p.D97D exonic ENSMUSG00000025381 synonymous SNV ENSMUST00000026446:c.C291T:p.D97D 10qD3 NA NA chr10 127763206 TGAxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 55 0 0 23.711384 0.47619 0.02 -0.18359 11 10 310 253 60 60 0 0 CC 8.418547 28 0 749 0 KEEP + Cnpy2 YES MNNG_2 chr10 127911326 127911326 G A intronic Smarcc2 NA NA intronic Smarcc2 NA NA intronic ENSMUSG00000025369 NA NA 10qD3 NA NA chr10 127911326 CAGxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 90 0 0 48.446178 0.5 0.02 -0.324486 18 18 528 507 60 60 0 0 GG 13.489921 45 0 1235 0 KEEP + Smarcc2 YES MNNG_2 chr10 127985747 127985747 C T intronic Rpl41 NA NA intronic Rpl41 NA NA upstream ENSMUSG00000039810 NA NA 10qD3 NA NA chr10 127985747 AACxCGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 233 4 0 51.561943 0.434783 0.02 -0.438332 26 20 738 557 60 60 0 0 CC 45.664856 152 0 4179 0 KEEP - Rpl41 YES MNNG_2 chr10 127996010 127996010 C T exonic Pa2g4 synonymous SNV NM_011119:c.G1137A:p.E379E exonic Pa2g4 synonymous SNV uc007hnl.1:c.G1137A:p.E379E exonic ENSMUSG00000025364 synonymous SNV ENSMUST00000026425:c.G1137A:p.E379E 10qD3 NA NA chr10 127996010 ATTxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 95 3 0 38.084044 0.394737 0.02 -0.333246 23 15 664 420 60 60 0 0 CC 15.3412 51 0 1453 0 KEEP - Pa2g4 YES MNNG_2 chr10 30356305 30356305 T G intergenic "Hint3(dist=18133),Ncoa7(dist=9083)" NA NA intergenic "Hint3(dist=18133),Ncoa7(dist=9083)" NA NA downstream ENSMUSG00000039697 NA NA 10qA4 NA NA chr10 30356305 GTGxTGC T G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 131 0 0 56.701741 0.555556 0.02 -0.324417 16 20 420 579 60 60 0 0 TT 23.458477 78 0 2135 0 KEEP - Hint3 NO MNNG_2 chr10 51791992 51791992 G A intronic Ros1 NA NA intronic Ros1 NA NA intronic ENSMUSG00000019893 NA NA 10qB3 NA NA chr10 51791992 GCTxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 77 0 0 59.612972 0.636364 0.02 -0.289346 12 21 342 590 60 60 0 0 GG 11.428255 38 0 1054 0 KEEP - Ros1 YES MNNG_2 chr10 66687923 66687923 C T exonic Jmjd1c synonymous SNV NM_001242396:c.C2763T:p.S921S exonic Jmjd1c synonymous SNV uc007fls.2:c.C2763T:p.S921S exonic ENSMUSG00000037876 synonymous SNV ENSMUST00000173689:c.C2763T:p.S921S 10qB5.1 NA NA chr10 66687923 ATCxTAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 121 0 0 35.529705 0.388889 0.02 -0.315705 22 14 635 393 60 60 0 0 CC 20.60617 72 1 2008 9 KEEP + Jmjd1c YES MNNG_2 chr10 72119560 72119560 T A intronic Zwint NA NA intronic Zwint NA NA intronic ENSMUSG00000019923 NA NA 10qB5.3 NA NA chr10 72119560 CCCxGCA T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 79 2 0 52.289777 0.575758 0.02 -0.289391 14 19 403 530 60 60 0 0 TT 9.613026 32 0 873 0 KEEP + Zwint NO MNNG_2 chr10 77298966 77298966 T C exonic Krtap10-10 nonsynonymous SNV NM_001024709:c.T223C:p.S75P exonic Krtap10-10 nonsynonymous SNV uc007fwf.2:c.T223C:p.S75P intronic ENSMUSG00000069581 NA NA 10qC1 NA NA chr10 77298966 GTGxCCA T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668463 0.668523 0.999909 64 0 2 47.867511 0.586207 0.02 -0.254274 12 17 313 483 60 60 0 0 TT 7.218059 24 0 653 0 KEEP + Krtap10-10 NO MNNG_2 chr10 79172809 79172809 C T exonic Bsg synonymous SNV NM_001077184:c.C231T:p.D77D exonic Bsg synonymous SNV uc007fzm.1:c.C231T:p.D77D exonic ENSMUSG00000023175 synonymous SNV ENSMUST00000105381:c.C231T:p.D77D 10qC1 NA NA chr10 79172809 GGAxGCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 97 0 0 37.606686 0.372093 0.02 -0.376864 27 16 687 423 60 60 0 0 CC 11.676429 39 0 978 0 KEEP + Bsg YES MNNG_2 chr10 79414524 79414524 C T exonic Arid3a nonsynonymous SNV NM_007880:c.C1649T:p.S550F exonic Arid3a nonsynonymous SNV uc007gar.1:c.C842T:p.S281F exonic ENSMUSG00000019564 nonsynonymous SNV ENSMUST00000019708:c.C1649T:p.S550F 10qC1 NA NA chr10 79414524 CTTxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851873 0.851984 0.999869 68 0 0 59.555461 0.578947 0.02 -0.333192 16 22 452 603 60 60 0 0 CC 6.255054 21 0 572 0 KEEP + Arid3a YES MNNG_2 chr10 79433680 79433680 C T exonic Grin3b synonymous SNV NM_130455:c.C36T:p.A12A exonic Grin3b synonymous SNV uc007gau.1:c.C36T:p.A12A exonic ENSMUSG00000035745 synonymous SNV ENSMUST00000045085:c.C36T:p.A12A 10qC1 NA NA chr10 79433680 GGCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP UNCOVERED 0.13753 0.139832 0.983538 35 0 0 18.796524 0.583333 0.02 -0.105225 5 7 146 190 60 60 0 0 CC 6.014297 20 0 550 0 KEEP + Grin3b YES MNNG_2 chr10 79491714 79491714 C T intronic Hmha1 NA NA intronic Hmha1 NA NA intronic ENSMUSG00000035697 NA NA 10qC1 NA NA chr10 79491714 TCCxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918088 0.918171 0.999909 80 0 0 52.871829 0.454545 0.02 -0.385864 24 20 694 565 60 60 0 0 CC 7.219169 24 0 672 0 KEEP + Hmha1 YES MNNG_2 chr10 80253954 80253954 C T exonic Dot1l synonymous SNV NM_199322:c.C4263T:p.D1421D exonic Dot1l synonymous SNV uc007gel.1:c.C4263T:p.D1421D exonic ENSMUSG00000061589 synonymous SNV ENSMUST00000149394:c.C900T:p.D300D 10qC1 NA NA chr10 80253954 GGAxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 289 1 0 196.965561 0.539007 0.02 2.056353 65 76 1808 2030 60 60 0 0 CC 35.488006 118 0 3232 0 KEEP + Dot1l YES MNNG_2 chr10 80606797 80606797 C T exonic Zbtb7a stopgain SNV NM_010731:c.C79T:p.Q27X exonic Zbtb7a stopgain SNV uc007gfz.1:c.C79T:p.Q27X exonic ENSMUSG00000035011 stopgain SNV ENSMUST00000048128:c.C79T:p.Q27X 10qC1 NA NA chr10 80606797 GAGxAGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 223 0 0 137.713592 0.572917 0.02 0.738727 41 55 1158 1400 60 60 0 0 CC 28.498656 95 0 2589 0 KEEP + Zbtb7a YES MNNG_2 chr10 80725348 80725348 C T intronic Matk NA NA intronic Matk NA NA intronic ENSMUSG00000004933 NA NA 10qC1 NA NA chr10 80725348 ACGxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851444 0.851984 0.999366 63 0 0 46.366783 0.473684 0.02 -0.333216 20 18 569 492 60 60 0 0 CC 5.111781 17 0 473 0 KEEP + Matk YES MNNG_2 chr10 80735796 80735796 C T exonic Apba3 synonymous SNV NM_018758:c.C1647T:p.I549I exonic Apba3 synonymous SNV uc007ggz.2:c.C1647T:p.I549I exonic ENSMUSG00000004931 synonymous SNV ENSMUST00000057798:c.C1647T:p.I549I 10qC1 NA NA chr10 80735796 GATxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 290 7 0 121.799545 0.5 0.02 0.960622 47 47 1351 1277 60 60 0 0 CC 43.610842 145 0 4094 0 KEEP + Apba3 YES MNNG_2 chr10 80824071 80824071 C T exonic Mfsd12 nonsynonymous SNV NM_028657:c.C652T:p.L218F exonic F630110N24Rik nonsynonymous SNV uc007gho.1:c.C652T:p.L218F exonic ENSMUSG00000034854 nonsynonymous SNV ENSMUST00000044844:c.C652T:p.L218F 10qC1 NA NA chr10 80824071 CTGxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 2 0 203.559719 0.490683 0.02 3.674597 82 79 2333 2144 60 60 0 0 CC 29.780004 99 0 2799 0 KEEP + Mfsd12 YES MNNG_2 chr10 8237976 8237976 G A exonic Ust synonymous SNV NM_177387:c.C222T:p.R74R exonic Ust synonymous SNV uc007eit.1:c.C222T:p.R74R exonic ENSMUSG00000047712 synonymous SNV ENSMUST00000061601:c.C222T:p.R74R 10qA1 NA NA chr10 8237976 GAAxCGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 106 1 0 22.935059 0.277778 0.02 -0.324325 26 10 737 274 60 60 0 0 GG 13.222603 44 0 1207 0 KEEP - Ust YES MNNG_2 chr10 85337262 85337262 C T exonic Pwp1 nonsynonymous SNV NM_133993:c.C200T:p.T67I exonic Pwp1 nonsynonymous SNV uc007gnc.2:c.C200T:p.T67I exonic ENSMUSG00000001785 nonsynonymous SNV ENSMUST00000001836:c.C200T:p.T67I 10qC1 NA NA chr10 85337262 CGAxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 56 0 0 38.186647 0.6 0.02 -0.218644 10 15 278 384 60 60 0 0 CC 6.917151 23 0 626 0 KEEP + Pwp1 YES MNNG_2 chr10 86350557 86350557 C T exonic Stab2 synonymous SNV NM_138673:c.G4518A:p.V1506V exonic Stab2 synonymous SNV uc007gqo.1:c.G4518A:p.V1506V exonic ENSMUSG00000035459 synonymous SNV ENSMUST00000161560:c.G165A:p.V55V 10qC1 NA NA chr10 86350557 GCAxACA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 235 5 0 114.321068 0.436364 0.02 2.221844 62 48 1799 1242 60 60 0 0 CC 26.154377 87 0 2449 0 KEEP - Stab2 YES MNNG_2 chr10 86396126 86396126 C T exonic Stab2 nonsynonymous SNV NM_138673:c.G2708A:p.C903Y exonic Stab2 nonsynonymous SNV uc011xla.1:c.G188A:p.C63Y exonic ENSMUSG00000035459 nonsynonymous SNV ENSMUST00000035288:c.G2708A:p.C903Y 10qC1 NA NA chr10 86396126 ACAxAAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717214 0.717315 0.999859 53 2 0 38.028302 0.483871 0.02 -0.27178 16 15 445 402 60 60 0 0 CC 5.414926 18 0 516 0 KEEP - Stab2 YES MNNG_2 chr10 89018023 89018023 C T intergenic "Nr1h4(dist=21656),Slc17a8(dist=18742)" NA NA intergenic "Nr1h4(dist=21656),Slc17a8(dist=18742)" NA NA intergenic "ENSMUSG00000047638(dist=21693),ENSMUSG00000019935(dist=18742)" NA NA 10qC2 "Score=0.975512;Name=No.10005,chr4:45004623" NA chr10 89018023 ATAxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 86 0 9 18.962906 0.347826 0.02 -0.201667 15 8 410 216 60 60 0 0 CC 14.737055 49 0 1343 0 KEEP NA Nr1h4 YES MNNG_2 chr10 89083596 89083596 C T exonic Slc17a8 nonsynonymous SNV NM_182959:c.G49A:p.G17R exonic Slc17a8 nonsynonymous SNV uc007gsk.2:c.G49A:p.G17R exonic ENSMUSG00000019935 nonsynonymous SNV ENSMUST00000020102:c.G49A:p.G17R 10qC2 NA NA chr10 89083596 TCCxAGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 98 2 0 29.43696 0.387097 0.02 -0.271851 19 12 555 327 60 60 0 0 CC 14.740987 49 0 1413 0 KEEP - Slc17a8 YES MNNG_2 chr10 93630341 93630341 C T intronic Nr2c1 NA NA intronic Nr2c1 NA NA intronic ENSMUSG00000005897 NA NA 10qC2 NA NA chr10 93630341 TTCxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 95 1 0 49.159657 0.5625 0.02 -0.280588 14 18 392 501 60 60 0 0 CC 16.799388 56 0 1556 0 KEEP + Nr2c1 YES MNNG_2 chr11 102062530 102062530 G A intronic Hdac5 NA NA intronic Hdac5 NA NA intronic ENSMUSG00000008855 NA NA 11qD NA NA chr11 102062530 GGAxTAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.22747 0.229173 0.99257 24 0 0 37.603702 0.866667 0.02 -0.131281 2 13 58 340 60 60 0 0 GG 2.406337 8 0 224 0 KEEP - Hdac5 YES MNNG_2 chr11 102172847 102172847 G A intronic Ubtf NA NA intronic Ubtf NA NA intronic ENSMUSG00000020923 NA NA 11qD NA NA chr11 102172847 AGGxGAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.83568 0.835716 0.999957 68 0 0 89.526396 0.857143 0.02 -0.324162 5 30 146 815 60 60 0 0 GG 7.820674 26 0 731 0 KEEP - Ubtf YES MNNG_2 chr11 103195542 103195542 G A intronic Arhgap27 NA NA intronic Arhgap27 NA NA intronic ENSMUSG00000034255 NA NA 11qE1 NA NA chr11 103195542 CTGxTCG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 407 8 0 321.401349 0.709877 0.02 3.647998 47 115 1333 3090 60 60 0 0 GG 55.305808 184 0 5003 0 KEEP - Arhgap27 YES MNNG_2 chr11 104504932 104504932 G T exonic Itgb3 stopgain SNV NM_016780:c.G1300T:p.E434X exonic Itgb3 stopgain SNV uc007lwx.2:c.G367T:p.E123X exonic ENSMUSG00000020689 stopgain SNV ENSMUST00000021028:c.G1300T:p.E434X 11qE1 NA NA chr11 104504932 CAGxAGA G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457697 0.457757 0.999869 50 2 0 18.995961 0.409091 0.02 -0.192463 13 9 377 212 60 60 0 0 GG 6.316965 21 0 593 0 KEEP + Itgb3 NO MNNG_2 chr11 105831923 105831923 G A exonic Ace nonsynonymous SNV NM_001281819:c.G583A:p.E195K exonic Ace nonsynonymous SNV uc007lxu.1:c.G583A:p.E195K exonic ENSMUSG00000020681 nonsynonymous SNV ENSMUST00000001963:c.G583A:p.E195K 11qE1 NA NA chr11 105831923 TGGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196286 0.196312 0.999869 38 0 0 28.929432 0.714286 0.02 -0.122768 4 10 114 278 60 60 0 0 GG 6.317169 21 0 597 0 KEEP - Ace YES MNNG_2 chr11 105885096 105885096 G T exonic Kcnh6 nonsynonymous SNV NM_001037712:c.G2012T:p.S671I exonic Kcnh6 nonsynonymous SNV uc007lxx.1:c.G2012T:p.S671I exonic ENSMUSG00000001901 nonsynonymous SNV ENSMUST00000001965:c.G2012T:p.S671I 11qE1 NA NA chr11 105885096 CAAxCGC G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 131 2 0 17.671202 0.152542 0.02 1.081317 50 9 1422 243 60 60 0 0 GG 15.641461 52 0 1470 0 KEEP + Kcnh6 NO MNNG_2 chr11 106677095 106677095 G A exonic Cep95 synonymous SNV NM_001166685:c.G1764A:p.K588K exonic Ccdc45 synonymous SNV uc011ygp.1:c.G1764A:p.K588K exonic ENSMUSG00000018372 synonymous SNV ENSMUST00000103068:c.G1764A:p.K588K 11qE1 NA NA chr11 106677095 CAAxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 75 2 0 48.621032 0.653846 0.02 -0.228013 9 17 264 478 60 60 0 0 GG 10.830159 36 0 1038 0 KEEP + Cep95 YES MNNG_2 chr11 107046158 107046158 T G exonic Nol11 nonsynonymous SNV NM_001161329:c.A357C:p.E119D exonic Nol11 nonsynonymous SNV uc007mah.2:c.A357C:p.E119D exonic ENSMUSG00000018433 nonsynonymous SNV ENSMUST00000018577:c.A357C:p.E119D 11qE1 NA NA chr11 107046158 GGGxTCT T G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 47 0 0 32.216557 0.846154 0.02 -0.122744 2 11 56 294 60 60 0 0 TT 8.721123 29 0 797 0 KEEP - Nol11 NO MNNG_2 chr11 113590444 113590444 G A exonic Cdc42ep4 nonsynonymous SNV NM_001163346:c.C434T:p.A145V exonic Cdc42ep4 nonsynonymous SNV uc007mfb.2:c.C434T:p.A145V exonic ENSMUSG00000041598 nonsynonymous SNV ENSMUST00000053536:c.C434T:p.A145V 11qE2 NA NA chr11 113590444 TCTxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 133 0 0 17.423129 0.133333 0.02 0.931031 65 10 1899 254 60 60 0 0 GG 13.826598 46 0 1284 0 KEEP - Cdc42ep4 YES MNNG_2 chr11 113691330 113691330 G A exonic Sdk2 synonymous SNV NM_172800:c.C4086T:p.R1362R exonic Sdk2 synonymous SNV uc007mfe.1:c.C4086T:p.R1362R exonic ENSMUSG00000041592 synonymous SNV ENSMUST00000041627:c.C4086T:p.R1362R 11qE2 NA NA chr11 113691330 CTGxCGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 179 4 0 207.754467 0.797753 0.02 0.943403 18 71 515 1934 60 60 0 0 GG 17.968475 60 0 1621 0 KEEP - Sdk2 YES MNNG_2 chr11 115255464 115255464 G A exonic Cdr2l synonymous SNV NM_001080929:c.G1311A:p.K437K exonic Cdr2l synonymous SNV uc007mhi.1:c.G1311A:p.K437K exonic ENSMUSG00000050910 synonymous SNV ENSMUST00000053288:c.G1311A:p.K437K 11qE2 NA NA chr11 115255464 CAAxGCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 117 2 0 118.876344 0.829787 0.02 -0.420923 8 39 233 1096 60 60 0 0 GG 15.040738 50 0 1421 0 KEEP + Cdr2l YES MNNG_2 chr11 116076165 116076165 T A exonic Ten1 nonsynonymous SNV NM_027107:c.T260A:p.V87E exonic 2310004N24Rik nonsynonymous SNV uc007mkn.2:c.T260A:p.V87E exonic ENSMUSG00000020778 nonsynonymous SNV ENSMUST00000021130:c.T260A:p.V87E 11qE2 NA NA chr11 116076165 TTGxGGT T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 106 2 0 9.673397 0.122449 0.02 -0.438282 43 6 1165 147 60 60 0 0 TT 11.728952 39 0 1056 0 KEEP + Ten1 NO MNNG_2 chr11 116466425 116466425 G A exonic Rhbdf2 synonymous SNV NM_001167680:c.C519T:p.D173D exonic Rhbdf2 synonymous SNV uc007mlu.2:c.C375T:p.D125D exonic ENSMUSG00000020806 synonymous SNV ENSMUST00000103028:c.C519T:p.D173D 11qE2 NA NA chr11 116466425 CCGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 272 7 0 43.871935 0.175573 0.02 2.029133 108 23 2969 593 60 60 0 0 GG 25.557176 85 0 2317 0 KEEP - Rhbdf2 YES MNNG_2 chr11 117214453 117214453 G A exonic Sept9 synonymous SNV NM_001113488:c.G423A:p.Q141Q exonic Sept9 synonymous SNV uc007mnf.2:c.G423A:p.Q141Q exonic ENSMUSG00000059248 synonymous SNV ENSMUST00000100193:c.G423A:p.Q141Q 11qE2 NA NA chr11 117214453 GCAxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 87 0 0 82.243805 0.84375 0.02 -0.280611 5 27 150 754 60 60 0 0 GG 12.633869 42 0 1197 0 KEEP + Sept9 YES MNNG_2 chr11 11876901 11876901 G A intronic Grb10 NA NA intronic Grb10 NA NA intronic ENSMUSG00000020176 NA NA 11qA1 NA NA chr11 11876901 TAGxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 178 2 0 13.520386 0.142857 0.02 -0.42966 42 7 1175 189 60 60 0 0 GG 27.364296 91 0 2503 0 KEEP - Grb10 YES MNNG_2 chr11 119238242 119238242 G A intronic Slc26a11 NA NA intronic Slc26a11 NA NA intronic ENSMUSG00000039908 NA NA 11qE2 NA NA chr11 119238242 GGAxAGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 145 0 0 152.935058 0.809524 0.02 1.143016 12 51 332 1419 60 60 0 0 GG 18.048173 60 0 1700 0 KEEP + Slc26a11 YES MNNG_2 chr11 120340068 120340068 G A exonic Hgs synonymous SNV NM_001159328:c.G1179A:p.E393E exonic Hgs synonymous SNV uc007msx.2:c.G1179A:p.E393E exonic ENSMUSG00000025793 synonymous SNV ENSMUST00000026900:c.G1179A:p.E393E 11qE2 NA NA chr11 120340068 TGAxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 150 0 0 162.152797 0.791045 0.02 1.205951 14 53 408 1518 60 60 0 0 GG 21.648888 72 0 1999 0 KEEP + Hgs YES MNNG_2 chr11 120587658 120587658 G A intronic Dcxr NA NA intronic Dcxr NA NA intronic ENSMUSG00000039450 NA NA 11qE2 NA NA chr11 120587658 AGGxGCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 105 0 0 128.717552 0.758621 0.02 1.267649 14 44 405 1217 60 60 0 0 GG 12.031861 40 0 1120 0 KEEP - Dcxr YES MNNG_2 chr11 120899089 120899089 G A exonic Cd7 stopgain SNV NM_009854:c.C430T:p.Q144X exonic Cd7 stopgain SNV uc007mvc.1:c.C430T:p.Q144X exonic ENSMUSG00000025163 stopgain SNV ENSMUST00000026159:c.C430T:p.Q144X 11qE2 NA NA chr11 120899089 TCTxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 60 0 0 64.739238 0.954545 0.02 -0.192894 1 21 28 565 60 60 0 0 GG 10.226085 34 0 939 0 KEEP - Cd7 YES MNNG_2 chr11 121465060 121465060 G A intronic Tbcd NA NA intronic Tbcd NA NA intronic ENSMUSG00000039230 NA NA 11qE2 NA NA chr11 121465060 GGTxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 28 0 0 21.996061 0.666667 0.02 -0.105214 4 8 108 215 60 60 0 0 GG 3.288449 11 0 286 0 KEEP + Tbcd YES MNNG_2 chr11 12153167 12153167 G A exonic Cobl synonymous SNV NM_001282993:c.C3462T:p.L1154L exonic Cobl synonymous SNV uc011xrp.1:c.C1890T:p.L630L exonic ENSMUSG00000020173 synonymous SNV ENSMUST00000109650:c.C3291T:p.L1097L 11qA1 NA NA chr11 12153167 TGGxAGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 179 0 0 112.002858 0.764706 0.02 1.337804 12 39 317 1055 60 60 0 0 GG 28.856062 96 0 2703 0 KEEP - Cobl YES MNNG_2 chr11 16775137 16775137 G A exonic Egfr nonsynonymous SNV NM_007912:c.G1473A:p.M491I exonic Egfr nonsynonymous SNV uc007ibn.1:c.G1473A:p.M491I exonic ENSMUSG00000020122 nonsynonymous SNV ENSMUST00000020325:c.G1473A:p.M491I 11qA2 NA NA chr11 16775137 CATxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139815 0.139832 0.999879 40 0 0 22.319637 0.666667 0.02 -0.104976 4 8 98 218 60 60 0 0 GG 6.608844 22 0 615 0 KEEP + Egfr YES MNNG_2 chr11 21407413 21407413 G A ncRNA_exonic 4932414J04Rik NA NA ncRNA_exonic 4932414J04Rik NA NA ncRNA_exonic ENSMUSG00000078962 NA NA 11qA3.1 "Score=0.940735;Name=No.14079,chr17:53908170" NA chr11 21407413 GTGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 161 2 13 76.737968 0.710526 0.02 -0.359523 11 27 320 738 60 60 0 0 GG 29.46915 98 0 2756 0 KEEP - 4932414J04Rik YES MNNG_2 chr11 30000725 30000725 G A intronic Sptbn1 NA NA intronic Spnb2 NA NA intronic ENSMUSG00000020315 NA NA 11qA3.3 NA NA chr11 30000725 GAGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 82 2 0 86.422788 0.805556 0.02 -0.324407 7 29 192 803 60 60 0 0 GG 9.626791 32 0 921 0 KEEP - Sptbn1 YES MNNG_2 chr11 30709822 30709822 G A intronic Psme4 NA NA intronic Psme4 NA NA intronic ENSMUSG00000040850 NA NA 11qA4 NA NA chr11 30709822 GGGxTGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999998 45 2 0 7.723966 0.5 0.02 -0.052614 3 3 87 81 60 60 0 0 GG 9.924798 33 0 907 0 KEEP + Psme4 YES MNNG_2 chr11 3129931 3129931 G A exonic Eif4enif1 nonsynonymous SNV NM_001166547:c.G1336A:p.V446M exonic Eif4enif1 nonsynonymous SNV uc007hsg.1:c.G376A:p.V126M exonic ENSMUSG00000020454 nonsynonymous SNV ENSMUST00000135223:c.G133A:p.V45M 11qA1 NA NA chr11 3129931 AAAxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 46 0 0 34.346994 0.705882 0.02 -0.149077 5 12 147 331 60 60 0 0 GG 6.316162 21 0 589 0 KEEP + Eif4enif1 YES MNNG_2 chr11 32620682 32620682 G A intronic Fbxw11 NA NA intronic Fbxw11 NA NA intronic ENSMUSG00000020271 NA NA 11qA4 NA NA chr11 32620682 GGAxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 69 0 0 68.541857 0.793103 0.02 -0.254307 6 23 174 640 60 60 0 0 GG 9.626339 32 0 916 0 KEEP + Fbxw11 YES MNNG_2 chr11 35689677 35689677 G A intronic Wwc1 NA NA intronic Wwc1 NA NA intronic ENSMUSG00000018849 NA NA 11qA4 NA NA chr11 35689677 AGAxATA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 77 0 0 59.33839 0.769231 0.02 -0.227973 6 20 159 559 60 60 0 0 GG 11.721698 39 0 1093 0 KEEP - Wwc1 YES MNNG_2 chr11 42405413 42405413 G T exonic Gabrb2 nonsynonymous SNV NM_008070:c.G595T:p.V199F exonic Gabrb2 nonsynonymous SNV uc011xte.1:c.G595T:p.V199F exonic ENSMUSG00000007653 nonsynonymous SNV ENSMUST00000007797:c.G595T:p.V199F 11qA5 NA NA chr11 42405413 GCAxTCA G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 94 0 0 70.732314 0.92 0.02 -0.219211 2 23 59 628 60 60 0 0 GG 16.845365 56 0 1586 0 KEEP + Gabrb2 NO MNNG_2 chr11 46063276 46063276 G A exonic Cyfip2 nonsynonymous SNV NM_001252459:c.C2221T:p.P741S exonic Cyfip2 nonsynonymous SNV uc007iob.1:c.C2221T:p.P741S exonic ENSMUSG00000020340 nonsynonymous SNV ENSMUST00000093166:c.C2221T:p.P741S 11qB1.1 NA NA chr11 46063276 ATGxCGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 124 0 0 97.970789 0.825 0.02 -0.359459 7 33 202 903 60 60 0 0 GG 18.904096 63 0 1682 0 KEEP - Cyfip2 YES MNNG_2 chr11 50016464 50016464 G A exonic Sqstm1 nonsynonymous SNV NM_011018:c.C827T:p.S276F exonic Sqstm1 nonsynonymous SNV uc007irw.1:c.C827T:p.S276F exonic ENSMUSG00000015837 nonsynonymous SNV ENSMUST00000015981:c.C827T:p.S276F 11qB1.3 NA NA chr11 50016464 CTGxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 181 4 0 29.532229 0.181818 0.02 1.019956 63 14 1823 387 60 60 0 0 GG 22.014784 79 2 2227 15 KEEP - Sqstm1 YES MNNG_2 chr11 50756207 50756207 G A intergenic "Zfp354b(dist=11070),Prop1(dist=8101)" NA NA ncRNA_exonic AK016813 NA NA exonic ENSMUSG00000072983 synonymous SNV ENSMUST00000109123:c.C69T:p.C23C 11qB1.3 NA NA chr11 50756207 GCTxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 61 0 0 56.718721 0.95 0.02 -0.184066 1 19 29 494 60 60 0 0 GG 9.308926 31 0 847 0 KEEP - Zfp354b YES MNNG_2 chr11 51467378 51467378 G A ncRNA_intronic D930048N14Rik NA NA intronic D930048N14Rik NA NA intronic ENSMUSG00000052563 NA NA 11qB1.3 NA NA chr11 51467378 TGAxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 358 2 0 335.782459 0.837037 0.02 2.189215 22 113 630 3080 60 60 0 0 GG 46.305801 154 0 4259 0 KEEP + D930048N14Rik YES MNNG_2 chr11 52197445 52197445 G A exonic Vdac1 synonymous SNV NM_011694:c.G417A:p.R139R exonic Vdac1 synonymous SNV uc007ivm.1:c.G417A:p.R139R exonic ENSMUSG00000020402 synonymous SNV ENSMUST00000020673:c.G456A:p.R152R 11qB1.3 NA NA chr11 52197445 CCGxGGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999999 71 0 0 42.690218 0.714286 0.02 -0.192904 6 15 179 410 60 60 0 0 GG 10.525243 35 0 964 0 KEEP + Vdac1 YES MNNG_2 chr11 52979335 52979335 G A exonic Fstl4 synonymous SNV NM_177059:c.G1416A:p.Q472Q exonic Fstl4 synonymous SNV uc007ivp.1:c.G1416A:p.Q472Q exonic ENSMUSG00000036264 synonymous SNV ENSMUST00000036796:c.G1416A:p.Q472Q 11qB1.3 NA NA chr11 52979335 CCAxAGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.99986 43 0 0 41.530325 0.823529 0.02 -0.149067 3 14 90 383 60 60 0 0 GG 5.715932 19 0 548 0 KEEP + Fstl4 YES MNNG_2 chr11 53220130 53220130 T A exonic Aff4 synonymous SNV NM_033565:c.T2676A:p.T892T exonic Aff4 synonymous SNV uc011xuq.1:c.T2589A:p.T863T exonic ENSMUSG00000049470 synonymous SNV ENSMUST00000167934:c.T2589A:p.T863T 11qB1.3 NA NA chr11 53220130 AACxTCT T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 91 3 0 56.077307 0.947368 0.02 -0.175366 1 18 27 492 37 60 0 0 TT 15.038997 50 0 1391 0 KEEP + Aff4 NO MNNG_2 chr11 54141897 54141897 T A intronic Acsl6 NA NA intronic Acsl6 NA NA intronic ENSMUSG00000020333 NA NA 11qB1.3 NA NA chr11 54141897 TTTxCTT T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229152 0.229173 0.999909 46 0 0 11.738996 0.333333 0.02 -0.131524 10 5 274 135 60 60 0 0 TT 7.197272 24 0 635 0 KEEP + Acsl6 NO MNNG_2 chr11 54141898 54141898 C T intronic Acsl6 NA NA intronic Acsl6 NA NA intronic ENSMUSG00000020333 NA NA 11qB1.3 NA NA chr11 54141898 TTTxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260941 0.260965 0.999909 46 0 0 11.671844 0.3125 0.02 -0.140215 11 5 301 136 60 60 0 0 CC 7.203431 24 0 644 0 KEEP + Acsl6 YES MNNG_2 chr11 54185228 54185228 G A intronic 4930404A10Rik NA NA intronic 4930404A10Rik NA NA intronic ENSMUSG00000020332 NA NA 11qB1.3 NA NA chr11 54185228 TGTxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 49 0 0 40.430814 0.823529 0.02 -0.149044 3 14 82 372 60 60 0 0 GG 8.423048 28 0 801 0 KEEP + 4930404A10Rik YES MNNG_2 chr11 54730276 54730276 G A intronic Tnip1 NA NA intronic Tnip1 NA NA intronic ENSMUSG00000020400 NA NA 11qB1.3 NA NA chr11 54730276 CAGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 100 0 0 84.443963 0.638298 0.02 -0.420929 17 30 493 835 60 60 0 0 GG 12.284592 41 0 1117 0 KEEP - Tnip1 YES MNNG_2 chr11 55037148 55037148 G A exonic Slc36a1 synonymous SNV NM_153139:c.G549A:p.V183V exonic Slc36a1 synonymous SNV uc007ize.1:c.G642A:p.V214V exonic ENSMUSG00000020261 synonymous SNV ENSMUST00000108867:c.G549A:p.V183V 11qB1.3 NA NA chr11 55037148 TGTxACC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 166 2 0 144.882071 0.787879 0.02 1.010436 14 52 377 1349 60 60 0 0 GG 23.156253 77 0 2193 0 KEEP + Slc36a1 YES MNNG_2 chr11 55840558 55840558 T G exonic Nmur2 nonsynonymous SNV NM_153079:c.A1106C:p.D369A exonic Nmur2 nonsynonymous SNV uc007izq.1:c.A1106C:p.D369A exonic ENSMUSG00000037393 nonsynonymous SNV ENSMUST00000037682:c.A1106C:p.D369A 11qB1.3 NA NA chr11 55840558 GCAxCCT T G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781026 0.78106 0.999957 66 0 0 24.430973 0.323529 0.02 -0.295867 23 11 575 285 60 60 0 0 TT 7.784217 26 0 678 0 KEEP - Nmur2 NO MNNG_2 chr11 57926567 57926567 T C exonic Cnot8 nonsynonymous SNV NM_026949:c.T325C:p.S109P exonic Cnot8 nonsynonymous SNV uc007jaj.1:c.T325C:p.S109P exonic ENSMUSG00000020515 nonsynonymous SNV ENSMUST00000020822:c.T325C:p.S109P 11qB1.3 NA NA chr11 57926567 TACxCCC T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 37 0 0 32.487483 0.846154 0.02 -0.113755 2 11 56 297 60 60 0 0 TT 6.918583 23 0 648 0 KEEP + Cnot8 NO MNNG_2 chr11 5811003 5811003 G A exonic Gck stopgain SNV NM_010292:c.C70T:p.Q24X exonic Gck stopgain SNV uc007hxm.1:c.C70T:p.Q24X exonic ENSMUSG00000041798 stopgain SNV ENSMUST00000102920:c.C70T:p.Q24X 11qA1 NA NA chr11 5811003 GCTxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 190 5 0 213.108878 0.704762 0.02 2.648852 31 74 888 2055 60 60 0 0 GG 18.348333 61 0 1726 0 KEEP - Gck YES MNNG_2 chr11 58850332 58850332 G A intronic Obscn NA NA intronic Obscn NA NA intronic ENSMUSG00000061462 NA NA 11qB1.3 NA NA chr11 58850332 AAGxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 85 0 0 83.253821 0.771429 0.02 -0.324172 8 27 212 785 60 60 0 0 GG 11.429696 38 0 1055 0 KEEP - Obscn YES MNNG_2 chr11 58998743 58998743 G A exonic Guk1 synonymous SNV NM_001159410:c.C370T:p.L124L exonic Guk1 synonymous SNV uc007jdg.2:c.C406T:p.L136L exonic ENSMUSG00000020444 synonymous SNV ENSMUST00000102702:c.C343T:p.L115L 11qB1.3 NA NA chr11 58998743 ACAxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 121 0 0 108.049456 0.76 0.02 -0.437629 12 38 344 1020 60 60 0 0 GG 17.736786 59 0 1673 0 KEEP - Guk1 YES MNNG_2 chr11 59001197 59001197 G A intronic Guk1 NA NA intronic Guk1 NA NA intronic ENSMUSG00000020444 NA NA 11qB1.3 NA NA chr11 59001197 ATGxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 121 0 0 105.024279 0.770833 0.02 -0.42027 11 37 298 986 60 60 0 0 GG 15.888616 53 0 1427 0 KEEP - Guk1 YES MNNG_2 chr11 59022577 59022577 G A intronic 2310033P09Rik NA NA intronic 2310033P09Rik NA NA intronic ENSMUSG00000020441 NA NA 11qB1.3 NA NA chr11 59022577 CAGxGTA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 121 0 0 26.489923 0.210526 0.02 1.293662 45 12 1303 335 60 60 0 0 GG 15.337371 51 0 1410 0 KEEP + 2310033P09Rik YES MNNG_2 chr11 59022763 59022763 G A intronic 2310033P09Rik NA NA intronic 2310033P09Rik NA NA intronic ENSMUSG00000020441 NA NA 11qB1.3 NA NA chr11 59022763 GGGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 81 4 0 26.432522 0.255319 0.02 -0.420863 35 12 980 323 60 60 0 0 GG 8.722029 29 0 795 0 KEEP + 2310033P09Rik YES MNNG_2 chr11 60337679 60337679 G A intronic Myo15 NA NA intronic Myo15 NA NA intronic ENSMUSG00000042678 NA NA 11qB2 NA NA chr11 60337679 AGGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 156 0 0 217.611751 0.776596 0.02 0.969346 21 73 602 2045 60 60 0 0 GG 12.025951 40 0 1101 0 KEEP + Myo15 YES MNNG_2 chr11 60665885 60665885 G A intronic Dhrs7b NA NA intronic Dhrs7b NA NA intronic ENSMUSG00000042569 NA NA 11qB2 NA NA chr11 60665885 AGAxACT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 238 7 0 220.959901 0.789474 0.02 0.853802 20 75 591 2065 60 60 0 0 GG 31.888596 106 0 3062 0 KEEP + Dhrs7b YES MNNG_2 chr11 61487175 61487175 G A exonic Slc5a10 synonymous SNV NM_001033227:c.C1479T:p.Y493Y exonic Slc5a10 synonymous SNV uc007jia.1:c.C1479T:p.Y493Y exonic ENSMUSG00000042371 synonymous SNV ENSMUST00000151780:c.C1392T:p.Y464Y 11qB2 NA NA chr11 61487175 CGGxTAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693577 0.693668 0.999869 54 1 0 72.200118 0.833333 0.02 -0.262729 5 25 146 662 60 60 0 0 GG 6.307934 21 0 553 0 KEEP - Slc5a10 YES MNNG_2 chr11 6298664 6298664 G A exonic Zmiz2 nonsynonymous SNV NM_001005867:c.G1081A:p.V361I exonic Zmiz2 nonsynonymous SNV uc007hym.1:c.G1081A:p.V361I exonic ENSMUSG00000041164 nonsynonymous SNV ENSMUST00000109785:c.G1099A:p.V367I 11qA1 NA NA chr11 6298664 GAAxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 251 1 0 29.486443 0.140351 0.02 2.195835 98 16 2659 419 60 60 0 0 GG 31.563836 105 0 2866 0 KEEP + Zmiz2 YES MNNG_2 chr11 64821698 64821698 G A exonic Arhgap44 synonymous SNV NM_001099288:c.C2154T:p.P718P exonic Arhgap44 synonymous SNV uc007jkt.1:c.C1728T:p.P576P exonic ENSMUSG00000033389 synonymous SNV ENSMUST00000047463:c.C2154T:p.P718P 11qB3 NA NA chr11 64821698 GGTxGGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 78 0 0 67.630535 0.757576 0.02 -0.306493 8 25 216 637 60 60 0 0 GG 9.92121 33 0 901 0 KEEP - Arhgap44 YES MNNG_2 chr11 6520861 6520861 G A exonic Tbrg4 synonymous SNV NM_001130457:c.C613T:p.L205L exonic Tbrg4 synonymous SNV uc007hyz.2:c.C613T:p.L205L exonic ENSMUSG00000000384 synonymous SNV ENSMUST00000000394:c.C613T:p.L205L 11qA1 NA NA chr11 6520861 GCAxCTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 123 2 0 160.622659 0.820896 0.02 1.099065 12 55 346 1481 60 60 0 0 GG 14.134782 47 0 1298 0 KEEP - Tbrg4 YES MNNG_2 chr11 65661894 65661894 G A exonic Dnah9 synonymous SNV NM_001099633:c.C12519T:p.Y4173Y exonic Dnahc9 synonymous SNV uc007jlg.1:c.C12519T:p.Y4173Y exonic ENSMUSG00000056752 synonymous SNV ENSMUST00000080665:c.C12519T:p.Y4173Y 11qB3 NA NA chr11 65661894 TAGxTAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291961 0.292001 0.999863 44 2 0 45.072618 0.882353 0.02 -0.149061 2 15 59 406 60 60 0 0 GG 6.014839 20 0 542 0 KEEP - Dnah9 YES MNNG_2 chr11 67066901 67066901 G A exonic Myh4 synonymous SNV NM_010855:c.G3594A:p.K1198K exonic Myh4 synonymous SNV uc007jmj.1:c.G3594A:p.K1198K exonic ENSMUSG00000057003 synonymous SNV ENSMUST00000170942:c.G3594A:p.K1198K 11qB3 NA NA chr11 67066901 GAAxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139819 0.139832 0.999909 37 0 0 19.297653 0.583333 0.02 -0.105233 5 7 145 195 60 60 0 0 GG 7.217375 24 0 680 0 KEEP + Myh4 YES MNNG_2 chr11 67555742 67555742 G A exonic Glp2r nonsynonymous SNV NM_175681:c.C766T:p.L256F exonic Glp2r nonsynonymous SNV uc007jmy.1:c.C259T:p.L87F exonic ENSMUSG00000049928 nonsynonymous SNV ENSMUST00000021289:c.C259T:p.L87F 11qB3 NA NA chr11 67555742 GAAxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 124 0 0 81.53114 0.638298 0.02 1.125343 17 30 488 806 60 60 0 0 GG 13.532766 45 0 1240 0 KEEP - Glp2r YES MNNG_2 chr11 69286942 69286942 T C exonic Dnah2 nonsynonymous SNV NM_001081330:c.A6146G:p.K2049R exonic Dnahc2 nonsynonymous SNV uc007jqg.1:c.A6146G:p.K2049R exonic ENSMUSG00000005237 nonsynonymous SNV ENSMUST00000035539:c.A6128G:p.K2043R 11qB3 NA NA chr11 69286942 AGCxTGG T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 1 68 0 0 37.87241 0.722222 0.02 -0.157805 5 13 146 363 60 60 0 0 TT 11.10213 37 0 1005 0 KEEP - Dnah2 NO MNNG_2 chr11 69337764 69337764 G A exonic Dnah2 synonymous SNV NM_001081330:c.C645T:p.V215V exonic Dnahc2 synonymous SNV uc007jqg.1:c.C645T:p.V215V exonic ENSMUSG00000005237 synonymous SNV ENSMUST00000035539:c.C645T:p.V215V 11qB3 NA NA chr11 69337764 GGGxACG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 51 1 0 41.028735 0.823529 0.02 -0.14905 3 14 87 378 60 60 0 0 GG 9.009939 30 0 814 0 KEEP - Dnah2 YES MNNG_2 chr11 69716612 69716612 G A exonic Neurl4 nonsynonymous SNV NM_001013414:c.G391A:p.V131I exonic Neurl4 nonsynonymous SNV uc007jsn.2:c.G391A:p.V131I exonic ENSMUSG00000047284 nonsynonymous SNV ENSMUST00000061837:c.G391A:p.V131I 11qB3 NA NA chr11 69716612 TGGxTAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 438 4 0 561.373111 0.837004 0.02 4.880259 37 190 1071 5147 60 60 0 0 GG 49.55502 165 0 4481 0 KEEP + Neurl4 YES MNNG_2 chr11 69845161 69845161 G A exonic Dlg4 synonymous SNV NM_001109752:c.G648A:p.G216G exonic Dlg4 synonymous SNV uc007jtp.2:c.G657A:p.G219G exonic ENSMUSG00000020886 synonymous SNV ENSMUST00000132597:c.G594A:p.G198G 11qB3 NA NA chr11 69845161 GGGxCTA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 225 4 0 245.510281 0.8 0.02 2.452293 21 84 591 2283 60 60 0 0 GG 25.849462 86 0 2347 0 KEEP + Dlg4 YES MNNG_2 chr11 69855458 69855458 G A intronic Dlg4 NA NA intronic Dlg4 NA NA intronic ENSMUSG00000020886 NA NA 11qB3 NA NA chr11 69855458 GTGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 146 0 0 186.834117 0.875 0.02 1.162986 9 63 262 1687 60 60 0 0 GG 19.826301 66 0 1827 0 KEEP + Dlg4 YES MNNG_2 chr11 70269201 70269201 G A exonic Cxcl16 nonsynonymous SNV NM_023158:c.C656T:p.A219V exonic Cxcl16 nonsynonymous SNV uc007juw.1:c.C656T:p.A219V exonic ENSMUSG00000018920 nonsynonymous SNV ENSMUST00000019064:c.C656T:p.A219V 11qB3 NA NA chr11 70269201 TAGxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120013 0.120436 0.99649 31 0 0 22.512529 0.727273 0.02 -0.096446 3 8 85 215 60 60 0 0 GG 4.508411 15 0 407 0 KEEP - Cxcl16 YES MNNG_2 chr11 72012106 72012106 G A exonic 4933427D14Rik synonymous SNV NM_028963:c.C453T:p.H151H exonic 4933427D14Rik synonymous SNV uc007jyd.1:c.C453T:p.H151H exonic ENSMUSG00000020807 synonymous SNV ENSMUST00000108505:c.C453T:p.H151H 11qB4 NA NA chr11 72012106 CTGxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 84 0 0 90.446572 0.882353 0.02 -0.298118 4 30 114 815 60 60 0 0 GG 13.233667 44 0 1209 0 KEEP - 4933427D14Rik YES MNNG_2 chr11 72564069 72564069 C G intronic Ankfy1 NA NA intronic Ankfy1 NA NA intronic ENSMUSG00000020790 NA NA 11qB4 NA NA chr11 72564069 TGGxGTG C G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353901 0.353947 0.999869 46 0 0 6.435379 0.157895 0.02 -0.166516 16 3 400 86 60 60 0 0 CC 6.00502 20 0 464 0 KEEP + Ankfy1 NO MNNG_2 chr11 72698013 72698013 G A intronic Zzef1 NA NA intronic Zzef1 NA NA intronic ENSMUSG00000055670 NA NA 11qB4 NA NA chr11 72698013 TTAxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043783 0.043787 0.999909 34 0 0 15.065195 0.714286 0.02 -0.061392 2 5 59 145 60 60 0 0 GG 7.219122 24 0 673 0 KEEP + Zzef1 YES MNNG_2 chr11 72726461 72726461 G A splicing Zzef1(NM_001045536:exon47:c.7530+1G>A) NA NA splicing "Zzef1(uc007jzl.2:exon47:c.7530+1G>A,uc007jzm.2:exon7:c.1029+1G>A,uc007jzn.2:exon1:c.21+1G>A)" NA NA splicing "ENSMUSG00000055670(ENSMUST00000172220:exon47:c.7530+1G>A,ENSMUST00000069395:exon47:c.7530+1G>A)" NA NA 11qB4 NA NA chr11 72726461 TTGxTAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 111 3 0 115.540193 0.754717 0.02 1.320032 13 40 371 1093 60 60 0 0 GG 13.527199 45 0 1222 0 KEEP + Zzef1 YES MNNG_2 chr11 74111737 74111737 G A intergenic "Olfr59(dist=8589),Olfr410(dist=36047)" NA NA intergenic "Olfr59(dist=8589),Olfr410(dist=36047)" NA NA ncRNA_exonic ENSMUSG00000082378 NA NA 11qB5 "Score=0.92973;Name=No.13009,chr11:74008947" NA chr11 74111737 TGGxGTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 112 0 8 71.120362 0.75 0.02 -0.289346 8 24 230 675 60 60 0 0 GG 19.194233 64 0 1728 0 KEEP NA Olfr59 YES MNNG_2 chr11 74380735 74380735 C A exonic Rap1gap2 synonymous SNV NM_001015046:c.G6T:p.L2L exonic Rap1gap2 synonymous SNV uc007kbx.1:c.G6T:p.L2L exonic ENSMUSG00000038807 synonymous SNV ENSMUST00000047488:c.G6T:p.L2L 11qB5 NA NA chr11 74380735 CGCxAGC C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 122 0 0 10.570495 0.185185 0.02 -0.245479 22 5 620 138 60 60 0 0 CC 18.951677 63 0 1798 0 KEEP - Rap1gap2 NO MNNG_2 chr11 74681570 74681570 G A exonic Sgsm2 synonymous SNV NM_197943:c.C585T:p.D195D exonic Sgsm2 synonymous SNV uc007kck.1:c.C585T:p.D195D exonic ENSMUSG00000038351 synonymous SNV ENSMUST00000057631:c.C585T:p.D195D 11qB5 NA NA chr11 74681570 GGGxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 94 2 0 86.881284 0.727273 0.02 -0.402724 12 32 337 829 60 60 0 0 GG 11.729497 39 0 1071 0 KEEP - Sgsm2 YES MNNG_2 chr11 75432741 75432741 G A splicing Pitpna(NM_008850:exon7:c.452-1G>A) NA NA splicing "Pitpna(uc007keh.1:exon7:c.451-1G>A,uc007kei.1:exon8:c.460-1G>A)" NA NA splicing "ENSMUSG00000017781(ENSMUST00000143219:exon8:c.460-1G>A,ENSMUST00000102509:exon6:c.377-1G>A)" NA NA 11qB5 NA NA chr11 75432741 TCAxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 123 4 0 40.569213 0.666667 0.02 -0.184163 7 14 205 397 60 60 0 0 GG 23.463914 78 0 2222 0 KEEP + Pitpna YES MNNG_2 chr11 77267852 77267852 G A exonic Ssh2 nonsynonymous SNV NM_177710:c.G3142A:p.E1048K exonic Ssh2 nonsynonymous SNV uc007kgo.1:c.G3160A:p.E1054K exonic ENSMUSG00000037926 nonsynonymous SNV ENSMUST00000108396:c.G3163A:p.E1055K 11qB5 NA NA chr11 77267852 ATGxAGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 54 1 0 46.728439 0.727273 0.02 -0.192923 6 16 173 447 60 60 0 0 GG 7.520502 25 0 711 0 KEEP + Ssh2 YES MNNG_2 chr11 78133894 78133894 G A exonic Spag5 nonsynonymous SNV NM_017407:c.G2861A:p.S954N exonic Spag5 nonsynonymous SNV uc007kiv.2:c.G2861A:p.S954N exonic ENSMUSG00000002055 nonsynonymous SNV ENSMUST00000045026:c.G2861A:p.S954N 11qB5 NA NA chr11 78133894 AGAxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.864772 0.865745 0.998875 72 0 0 85.78665 0.769231 0.02 -0.34158 9 30 244 806 60 60 0 0 GG 8.406823 28 0 768 0 KEEP + Spag5 YES MNNG_2 chr11 80259416 80259416 G A exonic Psmd11 nonsynonymous SNV NM_178616:c.G391A:p.A131T exonic Psmd11 nonsynonymous SNV uc007kme.1:c.G391A:p.A131T exonic ENSMUSG00000017428 nonsynonymous SNV ENSMUST00000168244:c.G91A:p.A31T 11qB5 NA NA chr11 80259416 TAGxCAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999999 55 1 0 21.427374 0.875 0.02 -0.070151 1 7 28 194 60 60 0 0 GG 10.813253 36 0 970 0 KEEP + Psmd11 YES MNNG_2 chr11 82750285 82750285 G A intronic Unc45b NA NA intronic Unc45b NA NA intronic ENSMUSG00000018845 NA NA 11qC NA NA chr11 82750285 CAGxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 62 0 0 74.479314 0.757576 0.02 -0.289396 8 25 235 705 60 60 0 0 GG 5.414856 18 0 514 0 KEEP + Unc45b YES MNNG_2 chr11 87594870 87594870 G A intronic Bzrap1 NA NA intronic Bzrap1 NA NA exonic ENSMUSG00000034156 nonsynonymous SNV ENSMUST00000107932:c.G233A:p.R78K 11qC NA NA chr11 87594870 GAAxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 93 0 0 104.164669 0.833333 0.02 -0.368235 7 35 192 957 60 60 0 0 GG 13.537236 45 0 1287 0 KEEP + Bzrap1 YES MNNG_2 chr11 95695374 95695374 G A exonic Abi3 nonsynonymous SNV NM_001163464:c.C437T:p.A146V exonic Abi3 nonsynonymous SNV uc007lat.2:c.C596T:p.A199V exonic ENSMUSG00000018381 nonsynonymous SNV ENSMUST00000018525:c.C596T:p.A199V 11qD NA NA chr11 95695374 ACGxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 196 2 0 186.674104 0.8125 0.02 0.985218 15 65 440 1725 60 60 0 0 GG 25.544259 85 0 2316 0 KEEP + Abi3 YES MNNG_2 chr11 95908527 95908527 G A exonic Snf8 nonsynonymous SNV NM_033568:c.G658A:p.G220R exonic Snf8 nonsynonymous SNV uc007lbb.1:c.G658A:p.G220R exonic ENSMUSG00000006058 nonsynonymous SNV ENSMUST00000107700:c.G583A:p.G195R 11qD NA NA chr11 95908527 GAAxGAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.259304 0.260965 0.993634 32 0 0 32.029251 0.6875 0.02 -0.140308 5 11 140 311 60 60 0 0 GG 3.610016 12 0 345 0 KEEP + Snf8 YES MNNG_2 chr11 96805224 96805224 G A UTR5 Pnpo NA NA ncRNA_UTR5 Pnpo NA NA ncRNA_UTR5 ENSMUSG00000018659 NA NA 11qD NA NA chr11 96805224 TGGxTTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851881 0.851984 0.999879 70 0 0 86.49675 0.810811 0.02 -0.333142 7 30 195 800 60 60 0 0 GG 6.616803 22 0 603 0 KEEP - Pnpo YES MNNG_2 chr11 96817394 96817394 G A ncRNA_intronic D030028A08Rik NA NA ncRNA_intronic D030028A08Rik NA NA ncRNA_intronic ENSMUSG00000078700 NA NA 11qD NA NA chr11 96817394 TGGxTAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 177 1 0 35.406874 0.173077 0.02 2.373033 86 18 2362 476 60 60 0 0 GG 17.442082 58 0 1582 0 KEEP + D030028A08Rik YES MNNG_2 chr11 97203907 97203907 G A exonic Gpr179 synonymous SNV NM_001081220:c.C1884T:p.I628I exonic Gpr179 synonymous SNV uc007ldy.1:c.C1884T:p.I628I exonic ENSMUSG00000070337 synonymous SNV ENSMUST00000093942:c.C1884T:p.I628I 11qD NA NA chr11 97203907 AGGxATG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 164 0 0 144.376524 0.842105 0.02 1.284954 9 48 260 1323 60 60 0 0 GG 22.86119 76 0 2150 0 KEEP - Gpr179 YES MNNG_2 chr11 97204502 97204502 G A intronic Gpr179 NA NA intronic Gpr179 NA NA intronic ENSMUSG00000070337 NA NA 11qD NA NA chr11 97204502 TGGxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 172 4 0 178.338572 0.772152 0.02 1.083404 18 61 530 1677 60 60 0 0 GG 18.613608 62 0 1683 0 KEEP - Gpr179 YES MNNG_2 chr11 98347023 98347023 G A intronic Ikzf3 NA NA intronic Ikzf3 NA NA intronic ENSMUSG00000018168 NA NA 11qD NA NA chr11 98347023 AAGxTAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 106 0 0 105.663614 0.77551 0.02 -0.4295 11 38 295 989 60 60 0 0 GG 15.337178 51 0 1380 0 KEEP - Ikzf3 YES MNNG_2 chr11 98882997 98882997 T C intronic Top2a NA NA intronic Top2a NA NA intronic ENSMUSG00000020914 NA NA 11qD NA NA chr11 98882997 ATAxGAG T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999997 49 0 0 8.590732 0.333333 0.02 -0.105175 8 4 207 100 60 60 0 0 TT 9.322789 31 0 836 0 KEEP - Top2a NO MNNG_2 chr11 99769908 99769908 G A UTR3 Krtap31-1 NA NA UTR3 Krtap31-1 NA NA UTR3 ENSMUSG00000070334 NA NA 11qD NA NA chr11 99769908 GGAxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 118 0 0 17.53824 0.222222 0.02 -0.315678 28 8 787 220 60 60 0 0 GG 21.355145 71 0 1971 0 KEEP + Krtap31-1 YES MNNG_2 chr12 103800013 103800013 C T exonic Chga synonymous SNV NM_007693:c.C552T:p.P184P exonic Chga synonymous SNV uc007oui.1:c.C552T:p.P184P exonic ENSMUSG00000021194 synonymous SNV ENSMUST00000021610:c.C552T:p.P184P 12qE NA NA chr12 103800013 CCCxATG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612352 0.612407 0.999909 59 0 0 37.555094 0.518519 0.02 -0.236782 13 14 384 390 60 60 0 0 CC 7.218822 24 0 675 0 KEEP + Chga YES MNNG_2 chr12 104033468 104033468 C T exonic Btbd7 nonsynonymous SNV NM_172806:c.G1667A:p.G556E exonic Btbd7 nonsynonymous SNV uc007our.1:c.G1667A:p.G556E exonic ENSMUSG00000041702 nonsynonymous SNV ENSMUST00000045652:c.G1667A:p.G556E 12qE NA NA chr12 104033468 TTCxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099257 0.099721 0.995343 30 0 0 6.978549 0.3 0.02 -0.087687 7 3 199 82 60 60 0 0 CC 4.211416 14 0 397 0 KEEP - Btbd7 YES MNNG_2 chr12 105341930 105341930 C T intronic Serpina5 NA NA intronic Serpina5 NA NA intronic ENSMUSG00000041550 NA NA 12qE NA NA chr12 105341930 GTAxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 141 2 0 15.848233 0.291667 0.02 -0.210463 17 7 491 188 60 60 0 0 CC 24.965288 83 0 2318 0 KEEP + Serpina5 YES MNNG_2 chr12 111879023 111879023 C T intronic Dync1h1 NA NA intronic Dync1h1 NA NA intronic ENSMUSG00000018707 NA NA 12qF1 NA NA chr12 111879023 TTAxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 139 1 0 31.884786 0.351351 0.02 -0.324455 24 13 676 361 60 60 0 0 CC 26.750374 89 0 2426 0 KEEP + Dync1h1 YES MNNG_2 chr12 112104417 112104417 C T intronic Zfp839 NA NA intronic Zfp839 NA NA intronic ENSMUSG00000021271 NA NA 12qF1 NA NA chr12 112104417 GCCxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 303 0 0 62.973156 0.337838 0.02 1.144581 49 25 1408 716 60 60 0 0 CC 51.072509 170 0 4716 0 KEEP + Zfp839 YES MNNG_2 chr12 112214906 112214906 C T exonic Ankrd9 synonymous SNV NM_175207:c.G804A:p.Q268Q exonic Ankrd9 synonymous SNV uc007pci.1:c.G804A:p.Q268Q exonic ENSMUSG00000037904 synonymous SNV ENSMUST00000142012:c.G903A:p.Q301Q 12qF1 NA NA chr12 112214906 CCGxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 96 0 0 57.147905 0.488889 0.02 -0.403383 23 22 663 602 60 60 0 0 CC 11.429124 38 0 1058 0 KEEP - Ankrd9 YES MNNG_2 chr12 11262001 11262001 C G exonic Gen1 nonsynonymous SNV NM_177331:c.G598C:p.G200R exonic Gen1 nonsynonymous SNV uc007naw.1:c.G379C:p.G127R exonic ENSMUSG00000051235 nonsynonymous SNV ENSMUST00000052581:c.G403C:p.G135R 12qA1.1 NA NA chr12 11262001 GTCxAAC C G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 152 0 0 9.381419 0.230769 0.02 -0.226531 20 6 581 126 60 60 0 0 CC 28.556446 95 0 2680 0 KEEP - Gen1 NO MNNG_2 chr12 17792945 17792945 C T intronic Hpcal1 NA NA intronic Hpcal1 NA NA intronic ENSMUSG00000071379 NA NA 12qA1.2 "Score=0.909091;Name=No.17565,chr12:23662058,No.17566,chr12:23832226" NA chr12 17792945 TGTxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 90 2 0 34.812543 0.424242 0.02 -0.289155 19 14 524 379 60 60 0 0 CC 12.926722 43 0 1180 0 KEEP + Hpcal1 YES MNNG_2 chr12 18071610 18071610 C T intergenic "Hpcal1(dist=272878),5730507C01Rik(dist=449706)" NA NA ncRNA_exonic EG245297 NA NA intergenic "ENSMUSG00000091687(dist=71336),ENSMUSG00000073198(dist=151794)" NA NA 12qA1.2 "Score=0.97274;Name=No.18195,chr12:18683474" NA chr12 18071610 TGCxAAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 143 10 30 19.998273 0.421053 0.02 -0.166619 11 8 323 218 57 43 0 0 CC 27.976199 93 0 2648 0 KEEP + Hpcal1 YES MNNG_2 chr12 30785309 30785309 C T exonic Tpo nonsynonymous SNV NM_009417:c.G1436A:p.R479H exonic Tpo nonsynonymous SNV uc007ngo.1:c.G1436A:p.R479H exonic ENSMUSG00000020673 nonsynonymous SNV ENSMUST00000021005:c.G1436A:p.R479H 12qA2 NA NA chr12 30785309 AAGxGAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 73 2 0 21.800217 0.36 0.02 -0.219169 16 9 425 246 60 60 0 0 CC 10.518156 35 0 885 0 KEEP - Tpo YES MNNG_2 chr12 31624479 31624479 T C exonic Sh3yl1 nonsynonymous SNV NM_013709:c.T332C:p.V111A exonic Sh3yl1 nonsynonymous SNV uc011ylg.1:c.T218C:p.V73A exonic ENSMUSG00000020669 nonsynonymous SNV ENSMUST00000110880:c.T218C:p.V73A 12qA2 NA NA chr12 31624479 CAGxAGA T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 123 0 0 35.984154 0.52 0.02 -0.219217 12 13 321 373 60 60 0 0 TT 19.847465 66 0 1771 0 KEEP + Sh3yl1 NO MNNG_2 chr12 39329401 39329401 C T exonic Dgkb stopgain SNV NM_178681:c.C2197T:p.Q733X exonic Dgkb stopgain SNV uc007nkn.1:c.C2020T:p.Q674X exonic ENSMUSG00000036095 stopgain SNV ENSMUST00000040500:c.C2197T:p.Q733X 12qA3 NA NA chr12 39329401 GCTxAGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 50 1 0 30.203445 0.846154 0.02 -0.113883 2 11 57 274 60 60 0 0 CC 9.018849 30 0 840 0 KEEP + Dgkb YES MNNG_2 chr12 52464427 52464427 C T exonic G2e3 nonsynonymous SNV NM_001015099:c.C901T:p.P301S exonic G2e3 nonsynonymous SNV uc007nml.2:c.C901T:p.P301S exonic ENSMUSG00000035293 nonsynonymous SNV ENSMUST00000054308:c.C901T:p.P301S 12qC1 NA NA chr12 52464427 CACxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 72 0 0 23.297372 0.666667 0.02 -0.105235 4 8 113 228 60 60 0 0 CC 15.640491 52 0 1455 0 KEEP + G2e3 YES MNNG_2 chr12 53010926 53010926 C T intronic Heatr5a NA NA intronic Heatr5a NA NA intronic ENSMUSG00000035181 NA NA 12qC1 NA NA chr12 53010926 TAAxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490538 0.490544 0.999988 59 0 0 26.31131 0.5 0.02 -0.201559 11 11 303 277 60 60 0 0 CC 8.120332 27 0 736 0 KEEP - Heatr5a YES MNNG_2 chr12 57876818 57876818 C A intronic Slc25a21 NA NA intronic Slc25a21 NA NA intronic ENSMUSG00000035472 NA NA 12qC1 NA NA chr12 57876818 GAGxCTG C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 0.999999 61 0 0 15.263989 0.461538 0.02 -0.113996 7 6 201 163 60 60 0 0 CC 10.527814 35 0 979 0 KEEP - Slc25a21 NO MNNG_2 chr12 73570135 73570135 A C intronic Lrrc9 NA NA intronic Lrrc9 NA NA intronic ENSMUSG00000021090 NA NA 12qC3 NA NA chr12 73570135 AAAxTTA A C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162446 0.162467 0.999869 36 0 0 9.223749 0.307692 0.02 -0.113993 9 4 250 108 60 60 0 0 AA 6.31549 21 0 572 0 KEEP + Lrrc9 NO MNNG_2 chr12 88078604 88078604 T G intronic Gm6772 NA NA intronic Gm6772 NA NA intronic ENSMUSG00000059114 NA NA 12qD2 NA NA chr12 88078604 TCAxTCT T G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 50 1 0 37.938483 0.590909 0.02 -0.201677 9 13 235 382 60 60 0 0 TT 6.014582 20 0 538 0 KEEP + Gm6772 NO MNNG_2 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 202 6 79 7.681145 0.125 0.02 -0.297624 28 4 791 110 54 29 0 0 CC 42.407478 141 0 3985 0 KEEP - Gm2042 NO MNNG_2 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 264 6 77 8.597151 0.12766 0.02 -0.411906 41 6 1092 135 60 37 0 0 TT 52.605102 175 0 4658 0 KEEP - Gm2042 NO MNNG_2 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 253 6 36 17.851479 0.163265 0.02 -0.438418 41 8 1120 235 60 37 0 0 TT 54.737132 182 0 4974 0 KEEP - Gm2042 NO MNNG_2 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 80 4 1 8.317966 0.166667 0.02 -0.21894 20 4 534 111 60 37 0 0 CC 13.23384 44 0 1211 0 KEEP - Gm2042 NO MNNG_2 chr12 90033860 90033860 C T exonic Nrxn3 nonsynonymous SNV NM_001198587:c.C232T:p.L78F exonic Nrxn3 nonsynonymous SNV uc007ojy.1:c.C232T:p.L78F exonic ENSMUSG00000066392 nonsynonymous SNV ENSMUST00000085138:c.C232T:p.L78F 12qD3 NA NA chr12 90033860 TGTxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 190 0 0 80.082838 0.4 0.02 0.895921 48 32 1360 882 60 60 0 0 CC 24.96783 83 0 2362 0 KEEP + Nrxn3 YES MNNG_2 chr12 90034210 90034210 C A exonic Nrxn3 synonymous SNV NM_001198587:c.C582A:p.V194V exonic Nrxn3 synonymous SNV uc007ojy.1:c.C582A:p.V194V exonic ENSMUSG00000066392 synonymous SNV ENSMUST00000085138:c.C582A:p.V194V 12qD3 NA NA chr12 90034210 CGTxCAG C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 175 2 0 57.676687 0.387097 0.02 1.053778 38 24 1094 642 60 60 0 0 CC 27.601203 92 0 2545 0 KEEP + Nrxn3 NO MNNG_2 chr12 90034355 90034355 C T intronic Nrxn3 NA NA intronic Nrxn3 NA NA intronic ENSMUSG00000066392 NA NA 12qD3 NA NA chr12 90034355 TCTxACC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 71 2 0 30.397005 0.5 0.02 -0.219179 12 12 342 319 60 60 0 0 CC 11.128736 37 0 1034 0 KEEP + Nrxn3 YES MNNG_2 chr12 99812346 99812346 C T intronic Kcnk10 NA NA intronic Kcnk10 NA NA intronic ENSMUSG00000033854 NA NA 12qE NA NA chr12 99812346 TAGxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423439 0.423478 0.999909 58 3 0 18.134634 0.4 0.02 -0.183597 12 8 339 202 60 60 1 0 CC 7.202931 24 0 644 0 KEEP - Kcnk10 YES MNNG_2 chr13 101071282 101071282 G A intronic "Naip6,Naip7" NA NA intronic "Naip6,Naip7" NA NA intronic ENSMUSG00000078942 NA NA 13qD1 "Score=0.971217;Name=No.34881,chr13:100982499" NA chr13 101071282 TCAxTGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1336 36 301 188.143726 0.373206 0.02 4.646317 131 78 3709 2109 60 60 0 0 GG 234.284814 779 0 22028 0 KEEP - Naip6 YES MNNG_2 chr13 101086225 101086225 C T exonic "Naip6,Naip7" synonymous SNV NM_010871:c.G282A:p.G94G exonic "Naip6,Naip7" synonymous SNV uc007rqn.1:c.G282A:p.G94G exonic ENSMUSG00000078942 synonymous SNV ENSMUST00000042220:c.G282A:p.G94G 13qD1 "Score=0.971217;Name=No.34881,chr13:100982499" NA chr13 101086225 AACxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1185 3 26 77.403559 0.14786 0.02 6.383863 219 38 6347 1060 60 60 0 0 CC 233.587273 777 0 21513 0 KEEP - Naip6 YES MNNG_2 chr13 101392762 101392762 G A exonic Rad17 stopgain SNV NM_001044371:c.C1711T:p.R571X exonic Rad17 stopgain SNV uc007rrc.1:c.C1711T:p.R571X exonic ENSMUSG00000021635 stopgain SNV ENSMUST00000022136:c.C1711T:p.R571X 13qD1 NA NA chr13 101392762 TTCxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 71 2 0 24.730434 0.642857 0.02 -0.12272 5 9 123 244 60 60 0 0 GG 13.225308 44 0 1133 0 KEEP - Rad17 YES MNNG_2 chr13 106234352 106234352 G A exonic Htr1a nonsynonymous SNV NM_008308:c.G19A:p.G7S exonic Htr1a nonsynonymous SNV uc007rtu.2:c.G19A:p.G7S exonic ENSMUSG00000021721 nonsynonymous SNV ENSMUST00000022235:c.G19A:p.G7S 13qD1 NA NA chr13 106234352 CTTxGCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 119 6 0 100.632739 0.666667 0.02 1.302512 18 36 504 984 60 60 0 0 GG 13.820172 46 0 1273 0 KEEP + Htr1a YES MNNG_2 chr13 107783281 107783281 G A exonic Kif2a nonsynonymous SNV NM_001145779:c.C238T:p.P80S exonic Kif2a nonsynonymous SNV uc007rud.2:c.C238T:p.P80S exonic ENSMUSG00000021693 nonsynonymous SNV ENSMUST00000022204:c.C238T:p.P80S 13qD2.1 NA NA chr13 107783281 GTGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 0.999999 62 0 0 28.4866 0.666667 0.02 -0.139578 5 10 126 278 60 60 0 0 GG 10.40286 35 0 929 0 KEEP - Kif2a YES MNNG_2 chr13 111094996 111094996 G A intergenic "Rab3c(dist=24582),Gapt(dist=47827)" NA NA intergenic "Rab3c(dist=23792),Gapt(dist=47827)" NA NA exonic ENSMUSG00000045609 synonymous SNV ENSMUST00000058710:c.C705T:p.P235P 13qD2.2 "Score=0.98433;Name=No.40858,chrX:162618283" NA chr13 111094996 CAGxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099162 0.099721 0.994391 42 0 14 21.166652 0.777778 0.02 -0.087696 2 7 58 199 23 36 0 0 GG 6.316769 21 0 588 0 KEEP NA Rab3c YES MNNG_2 chr13 117700169 117700169 T C intronic Parp8 NA NA intronic Parp8 NA NA intronic ENSMUSG00000021725 NA NA 13qD2.3 NA NA chr13 117700169 TCAxATT T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 43 0 0 16.872631 0.666667 0.02 -0.078916 3 6 81 165 60 60 0 0 TT 8.7185 29 0 769 0 KEEP - Parp8 NO MNNG_2 chr13 11800479 11800479 C T exonic Ryr2 nonsynonymous SNV NM_023868:c.G7540A:p.A2514T exonic Ryr2 nonsynonymous SNV uc007pld.1:c.G7540A:p.A2514T exonic ENSMUSG00000021313 nonsynonymous SNV ENSMUST00000021750:c.G7540A:p.A2514T 13qA1 NA NA chr13 11800479 GGGxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52183 0.522161 0.999366 41 0 0 21.704949 0.391304 0.02 -0.210439 14 9 402 241 60 60 0 0 CC 5.113599 17 0 477 0 KEEP - Ryr2 YES MNNG_2 chr13 11882588 11882588 C T exonic Ryr2 nonsynonymous SNV NM_023868:c.G2656A:p.A886T exonic Ryr2 nonsynonymous SNV uc007plf.1:c.G2635A:p.A879T exonic ENSMUSG00000021313 nonsynonymous SNV ENSMUST00000170156:c.G2635A:p.A879T 13qA1 NA NA chr13 11882588 CTGxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 180 3 0 54.631253 0.703704 0.02 -0.236764 8 19 229 527 60 60 0 0 CC 37.896789 126 0 3493 0 KEEP - Ryr2 YES MNNG_2 chr13 12371157 12371157 C T exonic Actn2 synonymous SNV NM_033268:c.G1743A:p.E581E exonic Actn2 synonymous SNV uc007pli.1:c.G1743A:p.E581E exonic ENSMUSG00000052374 synonymous SNV ENSMUST00000064204:c.G1743A:p.E581E 13qA1 NA NA chr13 12371157 CACxTCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 191 3 0 49.75098 0.283784 0.02 1.144557 53 21 1554 589 60 60 0 0 CC 30.935783 103 0 2838 0 KEEP - Actn2 YES MNNG_2 chr13 12570779 12570779 G A exonic Edaradd nonsynonymous SNV NM_133643:c.C298T:p.P100S exonic Edaradd nonsynonymous SNV uc007plp.1:c.C298T:p.P100S exonic ENSMUSG00000039309 nonsynonymous SNV ENSMUST00000041383:c.C298T:p.P100S 13qA1 NA NA chr13 12570779 GGGxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 147 0 0 96.871457 0.614035 0.02 1.284954 22 35 638 967 60 60 0 0 GG 20.691472 69 0 1896 0 KEEP - Edaradd YES MNNG_2 chr13 13729635 13729635 G A exonic Lyst synonymous SNV NM_010748:c.G2364A:p.R788R exonic Lyst synonymous SNV uc007pmi.1:c.G2364A:p.R788R exonic ENSMUSG00000019726 synonymous SNV ENSMUST00000050664:c.G2364A:p.R788R 13qA1 NA NA chr13 13729635 CAGxGTA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019981 0.019982 0.999957 33 0 0 8.552588 0.75 0.02 -0.035073 1 3 29 81 60 60 0 0 GG 7.821078 26 0 734 0 KEEP + Lyst YES MNNG_2 chr13 13844282 13844282 G A exonic Lyst nonsynonymous SNV NM_010748:c.G10405A:p.V3469I exonic Lyst nonsynonymous SNV uc007pmj.1:c.G10405A:p.V3469I exonic ENSMUSG00000019726 nonsynonymous SNV ENSMUST00000110559:c.G10405A:p.V3469I 13qA1 NA NA chr13 13844282 GTGxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16246 0.162467 0.999957 44 0 0 23.156123 0.692308 0.02 -0.113564 4 9 111 224 60 60 0 0 GG 7.819328 26 0 708 0 KEEP + Lyst YES MNNG_2 chr13 17669303 17669303 G A intronic 5033411D12Rik NA NA intronic 5033411D12Rik NA NA intronic ENSMUSG00000055137 NA NA 13qA2 NA NA chr13 17669303 TAAxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999869 32 0 0 18.480122 0.777778 0.02 -0.078191 2 7 58 173 60 60 0 0 GG 6.317493 21 0 603 0 KEEP - 5033411D12Rik YES MNNG_2 chr13 21234661 21234661 T A exonic Olfr1368 synonymous SNV NM_146534:c.A264T:p.P88P exonic Olfr1368 synonymous SNV uc007ppx.1:c.A264T:p.P88P exonic ENSMUSG00000045474 synonymous SNV ENSMUST00000055298:c.A264T:p.P88P 13qA3.1 NA NA chr13 21234661 CTTxGGG T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 69 0 0 10.091512 0.333333 0.02 -0.105228 8 4 221 115 60 60 0 0 TT 11.128704 37 0 1023 0 KEEP - Olfr1368 NO MNNG_2 chr13 21807773 21807773 G A exonic Hist1h2bl synonymous SNV NM_178199:c.C240T:p.R80R exonic Hist1h2bl synonymous SNV uc007pra.1:c.C240T:p.R80R exonic ENSMUSG00000069314 synonymous SNV ENSMUST00000091756:c.C240T:p.R80R 13qA3.1 NA NA chr13 21807773 CAGxCGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 153 0 22 13.789926 0.125 0.02 1.2049 49 7 1377 196 52 30 0 0 GG 22.553209 75 0 2071 0 KEEP - Hist1h2bl YES MNNG_2 chr13 23788276 23788276 C T exonic Hist1h1t nonsynonymous SNV NM_010377:c.C542T:p.A181V exonic Hist1h1t nonsynonymous SNV uc007pun.1:c.C542T:p.A181V exonic ENSMUSG00000036211 nonsynonymous SNV ENSMUST00000041052:c.C542T:p.A181V 13qA3.1 NA NA chr13 23788276 CCGxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.227586 0.229173 0.993072 29 0 0 26.290466 0.666667 0.02 -0.131285 5 10 146 257 60 60 0 0 CC 3.308584 11 0 305 0 KEEP + Hist1h1t YES MNNG_2 chr13 23838903 23838903 C T exonic Hist1h2bb synonymous SNV NM_175664:c.C240T:p.R80R exonic Hist1h2bb synonymous SNV uc007pus.1:c.C240T:p.R80R exonic ENSMUSG00000075031 synonymous SNV ENSMUST00000099703:c.C240T:p.R80R 13qA3.1 NA NA chr13 23838903 CCGxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693593 0.693668 0.999892 80 1 18 42.325806 0.533333 0.02 -0.263073 14 16 404 437 36 29 0 0 CC 10.465483 35 0 951 0 KEEP + Hist1h2bb YES MNNG_2 chr13 27673930 27673930 G A intronic Prl8a1 NA NA intronic Prl8a1 NA NA intronic ENSMUSG00000019756 NA NA 13qA3.1 NA NA chr13 27673930 GGGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 84 0 0 19.102738 0.470588 0.02 -0.149004 9 8 262 204 60 60 0 0 GG 16.844553 56 0 1581 0 KEEP - Prl8a1 YES MNNG_2 chr13 33124958 33124958 C T intronic Serpinb9b NA NA intronic Serpinb9b NA NA intronic ENSMUSG00000021403 NA NA 13qA3.3 NA NA chr13 33124958 ACTxAAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 65 0 0 28.228389 0.714286 0.02 -0.12276 4 10 114 271 60 60 0 0 CC 12.634878 42 0 1209 0 KEEP + Serpinb9b YES MNNG_2 chr13 34155885 34155885 G A exonic Bphl synonymous SNV NM_026512:c.G771A:p.Q257Q exonic Bphl synonymous SNV uc007qba.1:c.G771A:p.Q257Q exonic ENSMUSG00000038286 synonymous SNV ENSMUST00000040656:c.G771A:p.Q257Q 13qA3.3 NA NA chr13 34155885 CCAxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.352299 0.353947 0.995343 35 0 0 39.816558 0.736842 0.02 -0.1666 5 14 141 379 60 60 0 0 GG 4.210276 14 0 378 0 KEEP + Bphl YES MNNG_2 chr13 34436097 34436097 G A exonic Slc22a23 synonymous SNV NM_001033167:c.C570T:p.D190D exonic Slc22a23 synonymous SNV uc007qbh.1:c.C570T:p.D190D exonic ENSMUSG00000038267 nonsynonymous SNV ENSMUST00000145038:c.C368T:p.T123I 13qA3.3 NA NA chr13 34436097 TGAxTCG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 231 3 0 205.618975 0.655172 0.02 2.373737 40 76 1149 2019 60 60 0 0 GG 22.915482 80 1 2229 10 KEEP - Slc22a23 YES MNNG_2 chr13 3555668 3555668 C T exonic Gdi2 nonsynonymous SNV NM_008112:c.C497T:p.T166I exonic Gdi2 nonsynonymous SNV uc011yvx.1:c.C389T:p.T130I exonic ENSMUSG00000021218 nonsynonymous SNV ENSMUST00000110714:c.C389T:p.T130I 13qA1 NA NA chr13 3555668 AGAxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 57 0 1 11.238148 0.333333 0.02 -0.131526 10 5 285 130 60 60 0 0 CC 9.32456 31 0 866 0 KEEP + Gdi2 YES MNNG_2 chr13 41096772 41096772 G A exonic Pak1ip1 nonsynonymous SNV NM_026550:c.G74A:p.G25D exonic Pak1ip1 nonsynonymous SNV uc007qeq.2:c.G74A:p.G25D exonic ENSMUSG00000038683 nonsynonymous SNV ENSMUST00000046951:c.G74A:p.G25D 13qA3.3 NA NA chr13 41096772 GTGxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 109 0 0 64.784175 0.666667 0.02 -0.315615 12 24 331 633 60 60 0 0 GG 13.866807 51 1 1363 13 KEEP + Pak1ip1 YES MNNG_2 chr13 4448315 4448315 C T exonic Akr1c6 synonymous SNV NM_030611:c.C655T:p.L219L exonic Akr1c6 synonymous SNV uc007pjo.1:c.C655T:p.L219L exonic ENSMUSG00000021210 synonymous SNV ENSMUST00000156277:c.C496T:p.L166L 13qA1 NA NA chr13 4448315 GCTxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 98 1 0 29.69021 0.6875 0.02 -0.139984 5 11 143 288 60 60 0 0 CC 20.451337 68 0 1948 0 KEEP + Akr1c6 YES MNNG_2 chr13 4513653 4513653 C T exonic Akr1c20 nonsynonymous SNV NM_054080:c.G106A:p.E36K exonic Akr1c20 nonsynonymous SNV uc007pjp.1:c.G106A:p.E36K exonic ENSMUSG00000054757 nonsynonymous SNV ENSMUST00000078239:c.G106A:p.E36K 13qA1 NA NA chr13 4513653 CTTxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP UNCOVERED 0.077336 0.077336 1 107 2 0 13.799209 0.555556 0.02 -0.078925 4 5 115 141 60 60 0 0 CC 23.164652 77 0 2226 0 KEEP - Akr1c20 YES MNNG_2 chr13 45663590 45663590 G A exonic Atxn1 nonsynonymous SNV NM_001199304:c.C197T:p.S66F exonic Atxn1 nonsynonymous SNV uc011yyx.1:c.C197T:p.S66F exonic ENSMUSG00000046876 nonsynonymous SNV ENSMUST00000167708:c.C197T:p.S66F 13qA5 NA NA chr13 45663590 CCGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.99986 53 0 0 52.944531 0.72 0.02 -0.219229 7 18 197 508 60 60 0 0 GG 5.71434 19 0 525 0 KEEP - Atxn1 YES MNNG_2 chr13 48911909 48911909 G A exonic Phf2 synonymous SNV NM_011078:c.C1704T:p.V568V exonic Phf2 synonymous SNV uc007qim.1:c.C1353T:p.V451V exonic ENSMUSG00000038025 synonymous SNV ENSMUST00000035540:c.C1704T:p.V568V 13qA5 NA NA chr13 48911909 CAGxACG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 155 1 0 96.767045 0.553846 0.02 1.125361 29 36 815 990 60 60 0 0 GG 21.175159 74 1 2065 9 KEEP - Phf2 YES MNNG_2 chr13 54840390 54840390 G A exonic Gprin1 synonymous SNV NM_012014:c.C1431T:p.P477P exonic Gprin1 synonymous SNV uc007qpb.1:c.C1431T:p.P477P exonic ENSMUSG00000069227 synonymous SNV ENSMUST00000135343:c.C1431T:p.P477P 13qB1 NA NA chr13 54840390 CAGxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 100 0 0 61.32177 0.489362 0.02 -0.420915 24 23 694 645 60 60 0 0 GG 14.135076 47 0 1298 0 KEEP - Gprin1 YES MNNG_2 chr13 55578994 55578994 G A exonic Dbn1 synonymous SNV NM_001177371:c.C879T:p.F293F exonic Dbn1 synonymous SNV uc007qrc.2:c.C879T:p.F293F exonic ENSMUSG00000034675 synonymous SNV ENSMUST00000021950:c.C879T:p.F293F 13qB1 NA NA chr13 55578994 GAAxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 175 2 0 164.598697 0.730769 0.02 1.002763 21 57 617 1572 60 60 0 0 GG 24.961329 83 0 2361 0 KEEP - Dbn1 YES MNNG_2 chr13 55696226 55696226 G A intronic Tmed9 NA NA intronic Tmed9 NA NA intronic ENSMUSG00000058569 NA NA 13qB1 NA NA chr13 55696226 CAGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999999 74 0 0 68.12242 0.75 0.02 -0.280578 8 24 223 645 60 60 0 0 GG 10.526124 35 0 952 0 KEEP + Tmed9 YES MNNG_2 chr13 56734277 56734277 G A exonic Tgfbi synonymous SNV NM_009369:c.G1605A:p.G535G exonic Tgfbi synonymous SNV uc011zae.1:c.G1605A:p.G535G exonic ENSMUSG00000035493 synonymous SNV ENSMUST00000045173:c.G1605A:p.G535G 13qB1 NA NA chr13 56734277 AGGxGTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 55 0 0 42.331346 0.652174 0.02 -0.201255 8 15 214 416 60 60 0 0 GG 6.914405 23 0 628 0 KEEP + Tgfbi YES MNNG_2 chr13 62108438 62108438 G C intergenic "BC052688(dist=219796),Zfp808(dist=122812)" NA NA intergenic "AK006455(dist=180554),A130040M12Rik(dist=76069)" NA NA intergenic "ENSMUSG00000080451(dist=183414),ENSMUSG00000092904(dist=1389)" NA NA 13qB3 "Score=0.960103;Name=No.33008,chr13:61865990" NA chr13 62108438 ACAxATG G C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 49 0 2 6.63412 0.157895 0.02 -0.175399 16 3 459 88 60 36 0 0 GG 7.219695 24 0 687 0 KEEP NA BC052688 NO MNNG_2 chr13 62227189 62227189 G A intergenic "BC052688(dist=338547),Zfp808(dist=4061)" NA NA ncRNA_intronic A130040M12Rik NA NA intergenic "ENSMUSG00000074868(dist=89666),ENSMUSG00000074867(dist=4087)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:61861764" NA chr13 62227189 GTCxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.818465 0.818465 1 131 1 6 6.915266 0.114286 0.02 -0.315585 31 4 822 104 60 36 0 0 GG 25.545809 85 0 2162 0 KEEP - BC052688 YES MNNG_2 chr13 62706750 62706750 G A intronic 6720489N17Rik NA NA intronic 6720489N17Rik NA NA intronic ENSMUSG00000072066 NA NA 13qB3 "Score=0.930981;Name=No.33272,chr13:62536951" NA chr13 62706750 AGAxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 140 0 0 31.067369 0.444444 0.02 -0.236781 15 12 435 334 60 60 0 0 GG 26.172302 87 0 2497 0 KEEP - 6720489N17Rik YES MNNG_2 chr13 64883060 64883060 C T exonic Cntnap3 synonymous SNV NM_001081129:c.G1632A:p.Q544Q exonic Cntnap3 synonymous SNV uc007qyz.1:c.G1632A:p.Q544Q exonic ENSMUSG00000033063 synonymous SNV ENSMUST00000091554:c.G1632A:p.Q544Q 13qB3 NA NA chr13 64883060 TATxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 56 0 0 8.395831 0.173913 0.02 -0.201701 19 4 547 111 60 60 0 0 CC 6.91921 23 0 661 0 KEEP - Cntnap3 YES MNNG_2 chr13 65167868 65167868 C T UTR3 Hiatl1 NA NA UTR3 Hiatl1 NA NA UTR3 ENSMUSG00000038212 NA NA 13qB3 NA NA chr13 65167868 CAGxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 56 0 0 8.692957 0.235294 0.02 -0.148308 13 4 336 108 60 60 0 0 CC 8.72244 29 0 804 0 KEEP - Hiatl1 YES MNNG_2 chr13 65278941 65278941 G A UTR3 Nlrp4f NA NA UTR3 Nlrp4f NA NA exonic ENSMUSG00000032999 synonymous SNV ENSMUST00000081507:c.C2748T:p.F916F 13qB3 "Score=0.903195;Name=No.40125,chr9_random:127976" NA chr13 65278941 CTGxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 97 0 0 49.982256 0.772727 0.02 -0.192916 5 17 142 470 60 60 0 0 GG 19.837883 66 0 1856 0 KEEP - Nlrp4f YES MNNG_2 chr13 67031112 67031112 T A exonic Mterfd1 stopgain SNV NM_025547:c.A28T:p.R10X exonic Mterfd1 stopgain SNV uc007qzw.2:c.A28T:p.R10X exonic ENSMUSG00000021519 stopgain SNV ENSMUST00000173910:c.A28T:p.R10X 13qB3 NA NA chr13 67031112 GTCxGGG T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099658 0.099721 0.999366 35 0 0 16.838182 0.6 0.02 -0.087692 4 6 111 169 60 60 0 0 TT 5.113386 17 0 473 0 KEEP - Mterfd1 NO MNNG_2 chr13 72096328 72096328 C T intronic Irx1 NA NA intronic Irx1 NA NA intronic ENSMUSG00000060969 NA NA 13qC1 NA NA chr13 72096328 GGGxAAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 60 0 0 12.856005 0.3 0.02 -0.175372 14 6 411 153 60 60 0 0 CC 8.722833 29 0 810 0 KEEP - Irx1 YES MNNG_2 chr13 72096391 72096391 G A exonic Irx1 nonsynonymous SNV NM_010573:c.C1343T:p.P448L exonic Irx1 nonsynonymous SNV uc007rdd.1:c.C1343T:p.P448L exonic ENSMUSG00000060969 nonsynonymous SNV ENSMUST00000077337:c.C1343T:p.P448L 13qC1 NA NA chr13 72096391 GGGxGCG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 1 65 0 0 30.419112 0.611111 0.02 -0.157843 7 11 205 304 60 60 0 0 GG 11.126838 37 0 1006 0 KEEP - Irx1 YES MNNG_2 chr13 74319682 74319682 G A intronic Exoc3 NA NA intronic Exoc3 NA NA intronic ENSMUSG00000034152 NA NA 13qC1 NA NA chr13 74319682 CATxCTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 109 3 0 69.316248 0.714286 0.02 -0.306878 10 25 294 665 60 60 0 0 GG 19.548137 65 0 1827 0 KEEP - Exoc3 YES MNNG_2 chr13 77384604 77384604 G A exonic 2210408I21Rik synonymous SNV NM_001145676:c.G1113A:p.Q371Q exonic 2210408I21Rik synonymous SNV uc007rgx.2:c.G1113A:p.Q371Q exonic ENSMUSG00000071252 synonymous SNV ENSMUST00000095588:c.G1113A:p.Q371Q 13qC1 NA NA chr13 77384604 TCAxATG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229148 0.229173 0.999892 44 0 0 18.445954 0.466667 0.02 -0.13134 8 7 209 196 60 60 0 0 GG 6.919235 23 0 662 0 KEEP + 2210408I21Rik YES MNNG_2 chr13 83775064 83775064 C T exonic Mef2c nonsynonymous SNV NM_001170537:c.C629T:p.T210I exonic Mef2c nonsynonymous SNV uc007rii.2:c.C251T:p.T84I exonic ENSMUSG00000005583 nonsynonymous SNV ENSMUST00000005722:c.C623T:p.T208I 13qC3 NA NA chr13 83775064 GCAxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 86 0 0 8.871646 0.285714 0.02 -0.359509 10 4 276 106 70 60 0 0 CC 13.830435 46 0 1241 0 KEEP + Mef2c YES MNNG_2 chr13 93865363 93865363 G A exonic Cmya5 synonymous SNV NM_023821:c.C3171T:p.S1057S exonic Cmya5 synonymous SNV uc007rkw.2:c.C2955T:p.S985S exonic ENSMUSG00000047419 synonymous SNV ENSMUST00000062122:c.C3171T:p.S1057S 13qC3 NA NA chr13 93865363 AGGxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999998 61 0 0 35.458736 0.565217 0.02 -0.201687 10 13 287 361 60 60 0 0 GG 10.21153 34 0 934 0 KEEP - Cmya5 YES MNNG_2 chr13 93866808 93866808 G A exonic Cmya5 nonsynonymous SNV NM_023821:c.C1726T:p.P576S exonic Cmya5 nonsynonymous SNV uc007rkw.2:c.C1510T:p.P504S exonic ENSMUSG00000047419 nonsynonymous SNV ENSMUST00000062122:c.C1726T:p.P576S 13qC3 NA NA chr13 93866808 CAGxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 874 3 1 235.537705 0.563291 0.02 6.270042 69 89 1923 2401 60 60 0 0 GG 158.656268 528 0 14460 0 KEEP - Cmya5 YES MNNG_2 chr13 9621841 9621841 C T exonic Dip2c synonymous SNV NM_001081426:c.C3123T:p.I1041I exonic Dip2c synonymous SNV uc007pkw.2:c.C561T:p.I187I exonic ENSMUSG00000048264 synonymous SNV ENSMUST00000099913:c.C1995T:p.I665I 13qA1 NA NA chr13 9621841 TATxGCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09972 0.099721 0.999988 46 0 0 12.996535 0.5 0.02 -0.087208 5 5 109 136 60 60 0 0 CC 8.115535 27 0 705 0 KEEP + Dip2c YES MNNG_2 chr13 97717469 97717469 G A exonic Gcnt4 synonymous SNV NM_001166065:c.G1317A:p.L439L exonic Gcnt4 synonymous SNV uc007rno.2:c.G1317A:p.L439L exonic ENSMUSG00000091387 synonymous SNV ENSMUST00000171324:c.G1317A:p.L439L 13qD1 NA NA chr13 97717469 TTTxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 103 1 0 53.63511 0.666667 0.02 -0.263013 10 20 280 524 60 60 0 0 GG 16.840945 56 0 1574 0 KEEP + Gcnt4 YES MNNG_2 chr14 103555261 103555261 C T exonic Mycbp2 nonsynonymous SNV NM_207215:c.G9080A:p.G3027D exonic "Mycbp2,Phr1" nonsynonymous SNV uc007uwk.1:c.G554A:p.G185D exonic ENSMUSG00000033004 nonsynonymous SNV ENSMUST00000160758:c.G8750A:p.G2917D 14qE2.3 NA NA chr14 103555261 TCAxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 36 0 0 20.110087 0.470588 0.02 -0.149049 9 8 246 214 60 60 0 0 CC 5.413879 18 0 500 0 KEEP - Mycbp2 YES MNNG_2 chr14 109311223 109311223 G A exonic Slitrk1 synonymous SNV NM_199065:c.C1272T:p.D424D exonic Slitrk1 synonymous SNV uc007uyc.1:c.C1272T:p.D424D exonic ENSMUSG00000075478 synonymous SNV ENSMUST00000100322:c.C1272T:p.D424D 14qE3 NA NA chr14 109311223 GAGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 80 2 0 11.388718 0.285714 0.02 -0.183144 15 6 416 140 60 60 0 0 GG 15.033139 50 0 1376 0 KEEP - Slitrk1 YES MNNG_2 chr14 122304520 122304520 C T intronic Ubac2 NA NA intronic Ubac2 NA NA intronic ENSMUSG00000041765 NA NA 14qE5 NA NA chr14 122304520 TTTxTAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 59 0 0 25.04627 0.384615 0.02 -0.228013 16 10 467 278 60 60 0 0 CC 8.724192 29 0 834 0 KEEP + Ubac2 YES MNNG_2 chr14 15181450 15181450 C T exonic Il3ra nonsynonymous SNV NM_008369:c.C329T:p.P110L exonic Il3ra nonsynonymous SNV uc011zgc.1:c.C329T:p.P110L exonic ENSMUSG00000068758 nonsynonymous SNV ENSMUST00000090591:c.C329T:p.P110L 14qA2 NA NA chr14 15181450 CCCxAGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 138 2 0 147.498031 0.806452 0.02 1.232371 12 50 345 1369 60 70 0 0 CC 14.438379 48 0 1361 0 KEEP + Il3ra YES MNNG_2 chr14 20418949 20418949 A G exonic Gm5458 nonsynonymous SNV NM_001024706:c.T428C:p.I143T exonic Gm5458 nonsynonymous SNV uc011zgi.1:c.T428C:p.I143T exonic ENSMUSG00000071574 nonsynonymous SNV ENSMUST00000096121:c.T428C:p.I143T 14qA3 "Score=0.986572;Name=No.49681,chr14:7155478" NA chr14 20418949 TTGxTGC A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 611 136 67 19.416252 0.117647 0.02 0.827593 75 10 1977 280 60 60 0 0 AA 135.842819 452 0 12068 0 KEEP - Gm5458 NO MNNG_2 chr14 22667904 22667904 G A intronic Comtd1 NA NA ncRNA_exonic AK079754 NA NA ncRNA_exonic ENSMUSG00000090564 NA NA 14qA3 NA NA chr14 22667904 GAGxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.194952 0.196312 0.993072 29 0 0 22.262294 0.571429 0.02 -0.122776 6 8 174 226 60 60 0 0 GG 3.305999 11 0 296 0 KEEP - Comtd1 YES MNNG_2 chr14 24128393 24128393 G A exonic Kcnma1 synonymous SNV NM_001253367:c.C3381T:p.S1127S exonic Kcnma1 synonymous SNV uc007smf.1:c.C1233T:p.S411S exonic ENSMUSG00000063142 synonymous SNV ENSMUST00000163322:c.C417T:p.S139S 14qA3 NA NA chr14 24128393 CCGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 136 0 0 90.567634 0.673913 0.02 -0.403393 15 31 424 884 60 60 0 0 GG 22.558025 75 0 2090 0 KEEP - Kcnma1 YES MNNG_2 chr14 27762833 27762833 G A intronic Appl1 NA NA intronic Appl1 NA NA intronic ENSMUSG00000040760 NA NA 14qA3 NA NA chr14 27762833 ATTxATA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.03676 0.036766 0.99986 29 0 0 11.448406 0.666667 0.02 -0.052616 2 4 57 112 60 60 0 0 GG 5.715857 19 0 546 0 KEEP - Appl1 YES MNNG_2 chr14 31729020 31729020 G A intronic Itih3 NA NA intronic Itih3 NA NA intronic ENSMUSG00000006522 NA NA 14qB NA NA chr14 31729020 CAGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 55 0 0 48.923344 0.761905 0.02 -0.184171 5 16 143 463 60 60 0 0 GG 9.324401 31 0 863 0 KEEP - Itih3 YES MNNG_2 chr14 31750213 31750213 G A exonic Itih1 nonsynonymous SNV NM_008406:c.C1019T:p.S340F exonic Itih1 nonsynonymous SNV uc007svz.1:c.C1019T:p.S340F exonic ENSMUSG00000006529 nonsynonymous SNV ENSMUST00000006704:c.C1031T:p.S344F 14qB NA NA chr14 31750213 AGGxAGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 0.999999 57 0 0 30.148915 0.647059 0.02 -0.149062 6 11 171 297 60 60 0 0 GG 10.819597 36 0 1003 0 KEEP - Itih1 YES MNNG_2 chr14 31755654 31755654 G A exonic Itih1 synonymous SNV NM_008406:c.C288T:p.D96D exonic Itih1 synonymous SNV uc007svz.1:c.C288T:p.D96D exonic ENSMUSG00000006529 synonymous SNV ENSMUST00000006704:c.C300T:p.D100D 14qB NA NA chr14 31755654 AAAxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 114 0 0 48.258358 0.5625 0.02 -0.28058 14 18 387 492 60 60 0 0 GG 18.949486 63 0 1762 0 KEEP - Itih1 YES MNNG_2 chr14 31823336 31823336 G A exonic Glt8d1 nonsynonymous SNV NM_001165930:c.G517A:p.D173N exonic Glt8d1 nonsynonymous SNV uc007swf.2:c.G517A:p.D173N exonic ENSMUSG00000021916 nonsynonymous SNV ENSMUST00000022476:c.G517A:p.D173N 14qB NA NA chr14 31823336 GATxATG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138942 0.139832 0.993634 28 0 0 22.004328 0.666667 0.02 -0.10513 4 8 101 215 60 60 0 0 GG 3.609847 12 0 342 0 KEEP + Glt8d1 YES MNNG_2 chr14 31942069 31942069 C T ncRNA_exonic Smim4 NA NA UTR5 2010107H07Rik NA NA UTR5 ENSMUSG00000058351 NA NA 14qB NA NA chr14 31942069 GTCxCGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 133 0 0 23.277638 0.285714 0.02 -0.306903 25 10 718 276 60 60 0 0 CC 24.356382 81 0 2230 0 KEEP - Smim4 YES MNNG_2 chr14 32075798 32075798 G A intronic Dnah1 NA NA intronic Dnahc1 NA NA intronic ENSMUSG00000019027 NA NA 14qB NA NA chr14 32075798 AAGxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 68 0 0 26.426855 0.478261 0.02 -0.201631 12 11 333 281 60 60 0 0 GG 11.127392 37 0 1006 0 KEEP - Dnah1 YES MNNG_2 chr14 33904083 33904083 G A exonic Wdfy4 synonymous SNV NM_001146022:c.C4783T:p.L1595L exonic Wdfy4 synonymous SNV uc007szk.2:c.C4783T:p.L1595L exonic ENSMUSG00000051506 synonymous SNV ENSMUST00000061753:c.C4783T:p.L1595L 14qB NA NA chr14 33904083 GCAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 95 0 0 58.940641 0.594595 0.02 -0.350695 15 22 413 593 60 60 0 0 GG 13.217382 44 0 1195 0 KEEP - Wdfy4 YES MNNG_2 chr14 33955569 33955569 G A exonic Wdfy4 synonymous SNV NM_001146022:c.C1632T:p.T544T exonic Wdfy4 synonymous SNV uc007szk.2:c.C1632T:p.T544T exonic ENSMUSG00000051506 synonymous SNV ENSMUST00000061753:c.C1632T:p.T544T 14qB NA NA chr14 33955569 GTAxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 156 2 0 71.361639 0.641026 0.02 -0.359549 14 25 407 705 60 60 0 0 GG 23.764003 79 0 2235 0 KEEP - Wdfy4 YES MNNG_2 chr14 37753570 37753570 C T exonic Ccser2 nonsynonymous SNV NM_027045:c.G842A:p.G281E exonic "Fam190b,Gcap14" nonsynonymous SNV uc007tbn.1:c.G842A:p.G281E exonic ENSMUSG00000058690 nonsynonymous SNV ENSMUST00000090024:c.G842A:p.G281E 14qB NA NA chr14 37753570 TTCxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 121 1 0 60.017873 0.636364 0.02 -0.315704 12 21 346 594 60 60 0 0 CC 23.147577 77 0 2122 0 KEEP - Ccser2 YES MNNG_2 chr14 41988883 41988883 G A intronic Sftpd NA NA intronic Sftpd NA NA intronic ENSMUSG00000021795 NA NA 14qB NA NA chr14 41988883 CCAxTGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322777 0.322807 0.999909 47 0 0 30.048723 0.647059 0.02 -0.157829 6 11 172 296 60 60 0 0 GG 7.219887 24 0 689 0 KEEP - Sftpd YES MNNG_2 chr14 45840039 45840039 C T exonic Gpr137c synonymous SNV NM_027518:c.C372T:p.F124F exonic Gpr137c synonymous SNV uc007tgj.2:c.C372T:p.F124F exonic ENSMUSG00000049092 synonymous SNV ENSMUST00000146150:c.C372T:p.F124F 14qC1 NA NA chr14 45840039 CTTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 199 2 0 32.849902 0.285714 0.02 -0.438452 35 14 1006 389 60 60 0 0 CC 32.477509 108 0 3013 0 KEEP + Gpr137c YES MNNG_2 chr14 48000027 48000027 G A exonic Lgals3 synonymous SNV NM_001145953:c.G318A:p.G106G exonic Lgals3 synonymous SNV uc007tia.2:c.G318A:p.G106G exonic ENSMUSG00000050335 synonymous SNV ENSMUST00000116487:c.G57A:p.G19G 14qC1 NA NA chr14 48000027 TGGxGCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818349 0.818465 0.999859 64 0 0 60.593277 0.617647 0.02 -0.315684 13 21 363 604 60 70 0 0 GG 5.406931 18 0 487 0 KEEP + Lgals3 YES MNNG_2 chr14 48013959 48013959 C T exonic Dlgap5 nonsynonymous SNV NM_144553:c.G1847A:p.G616E exonic Dlgap5 nonsynonymous SNV uc007tid.1:c.G1847A:p.G616E exonic ENSMUSG00000037544 nonsynonymous SNV ENSMUST00000043296:c.G1847A:p.G616E 14qC1 NA NA chr14 48013959 GTTxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 131 0 0 30.138105 0.387097 0.02 -0.271844 19 12 541 334 60 60 0 0 CC 26.469477 88 0 2474 0 KEEP - Dlgap5 YES MNNG_2 chr14 48352910 48352910 G A exonic Ktn1 synonymous SNV NM_008477:c.G3792A:p.Q1264Q exonic Ktn1 synonymous SNV uc007tjf.1:c.G558A:p.Q186Q exonic ENSMUSG00000021843 synonymous SNV ENSMUST00000070762:c.G3636A:p.Q1212Q 14qC1 NA NA chr14 48352910 ACAxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 85 0 0 18.898508 0.583333 0.02 -0.105209 5 7 137 191 60 60 0 0 GG 13.870113 53 1 1497 19 KEEP + Ktn1 YES MNNG_2 chr14 51072920 51072920 C T exonic Olfr740 synonymous SNV NM_146667:c.C192T:p.Y64Y exonic Olfr740 synonymous SNV uc007tld.1:c.C192T:p.Y64Y exonic ENSMUSG00000068433 synonymous SNV ENSMUST00000089838:c.C192T:p.Y64Y 14qC1 "Score=0.910749;Name=No.53341,chr14:51152983" NA chr14 51072920 GTAxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 461 0 0 74.819447 0.299065 0.02 2.44337 75 32 2137 879 60 60 0 0 CC 91.130986 303 0 8330 0 KEEP + Olfr740 YES MNNG_2 chr14 51238293 51238293 G A exonic Olfr744 nonsynonymous SNV NM_001011738:c.G395A:p.R132K exonic Olfr744 nonsynonymous SNV uc007tlg.1:c.G395A:p.R132K exonic ENSMUSG00000053815 nonsynonymous SNV ENSMUST00000066457:c.G395A:p.R132K 14qC1 NA NA chr14 51238293 GCAxGCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 394 3 0 148.68165 0.569892 0.02 0.978089 40 53 1136 1510 60 60 0 0 GG 78.801239 262 0 7379 0 KEEP + Olfr744 YES MNNG_2 chr14 52823557 52823557 T C exonic Chd8 nonsynonymous SNV NM_201637:c.A6772G:p.K2258E exonic Chd8 nonsynonymous SNV uc007tou.1:c.A2845G:p.K949E exonic ENSMUSG00000053754 nonsynonymous SNV ENSMUST00000089752:c.A6772G:p.K2258E 14qC2 NA NA chr14 52823557 CTTxGAT T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 67 2 0 25.794373 0.4 0.02 -0.218232 15 10 389 283 60 60 0 0 TT 8.421997 28 0 778 0 KEEP + Chd8 NO MNNG_2 chr14 52916316 52916316 C T intronic Mettl3 NA NA intronic Mettl3 NA NA intronic ENSMUSG00000022160 NA NA 14qC2 NA NA chr14 52916316 CTCxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 189 0 0 32.71247 0.230769 0.02 1.116487 50 15 1443 408 60 60 0 0 CC 31.277502 104 0 2878 0 KEEP - Mettl3 YES MNNG_2 chr14 55297686 55297686 C T exonic Acin1 synonymous SNV NM_001085473:c.G504A:p.E168E exonic Acin1 synonymous SNV uc007twv.2:c.G504A:p.E168E exonic ENSMUSG00000022185 synonymous SNV ENSMUST00000022793:c.G504A:p.E168E 14qC3 NA NA chr14 55297686 CGAxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.611079 0.612407 0.997832 48 2 0 21.32927 0.333333 0.02 -0.236773 18 9 525 245 60 60 0 0 CC 4.813118 16 0 456 0 KEEP - Acin1 YES MNNG_2 chr14 55352050 55352050 C T exonic Slc7a8 nonsynonymous SNV NM_016972:c.G980A:p.G327D exonic Slc7a8 nonsynonymous SNV uc007txa.1:c.G980A:p.G327D exonic ENSMUSG00000022180 nonsynonymous SNV ENSMUST00000022787:c.G980A:p.G327D 14qC3 NA NA chr14 55352050 CCAxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.2608 0.260965 0.999366 41 2 0 8.601788 0.25 0.02 -0.140303 12 4 344 106 70 60 0 0 CC 5.113207 17 0 471 0 KEEP - Slc7a8 YES MNNG_2 chr14 56208900 56208900 C T exonic Psme2 synonymous SNV NM_001029855:c.G90A:p.R30R exonic Psme2 synonymous SNV uc007tzg.1:c.G114A:p.R38R exonic ENSMUSG00000079197 synonymous SNV ENSMUST00000111378:c.G90A:p.R30R 14qC3 NA NA chr14 56208900 TTTxCGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 144 2 0 27.830661 0.272727 0.02 -0.394588 32 12 899 333 60 60 0 0 CC 20.454706 68 0 1932 0 KEEP - Psme2 YES MNNG_2 chr14 56222280 56222280 G A intronic Rnf31 NA NA intronic Rnf31 NA NA intronic ENSMUSG00000047098 NA NA 14qC3 NA NA chr14 56222280 CCAxCTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 187 0 0 108.185419 0.709091 0.02 1.204564 16 39 440 1040 60 60 0 0 GG 31.581747 105 0 2931 0 KEEP + Rnf31 YES MNNG_2 chr14 56244136 56244136 C T exonic Rec8 nonsynonymous SNV NM_020002:c.C1714T:p.L572F exonic Rec8 nonsynonymous SNV uc007tzo.1:c.C1714T:p.L572F exonic ENSMUSG00000002324 nonsynonymous SNV ENSMUST00000002395:c.C1714T:p.L572F 14qC3 NA NA chr14 56244136 CTTxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 75 0 0 9.201836 0.25 0.02 -0.140312 12 4 344 112 60 60 0 0 CC 12.935379 43 0 1228 0 KEEP + Rec8 YES MNNG_2 chr14 56270693 56270693 C T intronic Tssk4 NA NA exonic Tssk4 synonymous SNV uc011zlm.1:c.C838T:p.L280L exonic ENSMUSG00000007591 synonymous SNV ENSMUST00000164809:c.C838T:p.L280L 14qC3 NA NA chr14 56270693 GTGxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 134 0 0 50.178647 0.416667 0.02 -0.42969 28 20 810 548 60 60 0 0 CC 21.658549 72 0 2052 0 KEEP + Tssk4 YES MNNG_2 chr14 57293304 57293304 C T exonic Mphosph8 nonsynonymous SNV NM_023773:c.C946T:p.L316F exonic Mphosph8 nonsynonymous SNV uc007ucg.1:c.C424T:p.L142F exonic ENSMUSG00000079184 nonsynonymous SNV ENSMUST00000116468:c.C946T:p.L316F 14qC3 NA NA chr14 57293304 GACxTTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 59 0 0 9.790996 0.333333 0.02 -0.105236 8 4 233 112 60 60 0 0 CC 11.73027 39 0 1089 0 KEEP + Mphosph8 YES MNNG_2 chr14 61379763 61379763 C T exonic Spata13 nonsynonymous SNV NM_001033272:c.C3610T:p.H1204Y exonic Spata13 nonsynonymous SNV uc007ufe.2:c.C886T:p.H296Y exonic ENSMUSG00000021990 nonsynonymous SNV ENSMUST00000162945:c.C1600T:p.H534Y 14qD1 NA NA chr14 61379763 CTTxACC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 186 2 0 58.931573 0.309524 0.02 0.941109 58 26 1674 691 60 60 0 0 CC 22.857288 76 0 2151 0 KEEP + Spata13 YES MNNG_2 chr14 61592447 61592447 C T exonic Tnfrsf19 nonsynonymous SNV NM_001164155:c.G628A:p.D210N exonic Tnfrsf19 nonsynonymous SNV uc007ufi.2:c.G628A:p.D210N exonic ENSMUSG00000060548 nonsynonymous SNV ENSMUST00000164550:c.G199A:p.D67N 14qD1 NA NA chr14 61592447 TGTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 1 62 0 0 14.586766 0.333333 0.02 -0.157848 12 6 341 167 60 60 0 0 CC 11.129432 37 0 1040 0 KEEP - Tnfrsf19 YES MNNG_2 chr14 61930027 61930027 G A exonic Arl11 nonsynonymous SNV NM_177337:c.G448A:p.E150K exonic Arl11 nonsynonymous SNV uc007ufu.1:c.G448A:p.E150K exonic ENSMUSG00000043157 nonsynonymous SNV ENSMUST00000055159:c.G448A:p.E150K 14qD1 NA NA chr14 61930027 TGGxAGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918131 0.918171 0.999957 72 0 0 9.227856 0.113636 0.02 -0.385877 39 5 1133 136 60 60 0 0 GG 7.820302 26 0 731 0 KEEP + Arl11 YES MNNG_2 chr14 61930028 61930028 A C exonic Arl11 nonsynonymous SNV NM_177337:c.A449C:p.E150A exonic Arl11 nonsynonymous SNV uc007ufu.1:c.A449C:p.E150A exonic ENSMUSG00000043157 nonsynonymous SNV ENSMUST00000055159:c.A449C:p.E150A 14qD1 NA NA chr14 61930028 GGGxGCT A C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926628 0.92664 0.999988 74 0 0 8.680012 0.111111 0.02 -0.394502 40 5 1101 131 60 60 0 0 AA 8.120784 27 0 752 0 KEEP + Arl11 NO MNNG_2 chr14 65871978 65871978 G A UTR5 Fzd3 NA NA UTR5 Fzd3 NA NA UTR5 ENSMUSG00000007989 NA NA 14qD1 NA NA chr14 65871978 CTGxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999999 56 0 0 16.77172 0.666667 0.02 -0.078921 3 6 88 164 60 60 0 0 GG 10.227395 34 0 962 0 KEEP - Fzd3 YES MNNG_2 chr14 69264924 69264924 C T exonic Adam28 nonsynonymous SNV NM_001048175:c.G281A:p.G94E exonic Adam28 nonsynonymous SNV uc007ult.1:c.G281A:p.G94E exonic ENSMUSG00000014725 nonsynonymous SNV ENSMUST00000022642:c.G281A:p.G94E 14qD2 NA NA chr14 69264924 TTTxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999997 42 1 0 7.343293 0.333333 0.02 -0.087699 6 3 175 84 60 60 0 0 CC 9.024693 30 0 855 0 KEEP - Adam28 YES MNNG_2 chr14 70033802 70033802 C T exonic Loxl2 synonymous SNV NM_033325:c.C69T:p.S23S exonic Loxl2 synonymous SNV uc007umn.2:c.C69T:p.S23S exonic ENSMUSG00000034205 synonymous SNV ENSMUST00000022660:c.C69T:p.S23S 14qD2 NA NA chr14 70033802 GAGxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851947 0.851984 0.999957 70 0 0 18.704277 0.25 0.02 -0.333122 27 9 761 232 60 60 0 0 CC 7.804167 26 0 694 0 KEEP - Loxl2 YES MNNG_2 chr14 70103849 70103849 C T exonic R3hcc1 nonsynonymous SNV NM_001146012:c.G520A:p.E174K exonic R3hcc1 nonsynonymous SNV uc007ump.2:c.G520A:p.E174K exonic ENSMUSG00000034194 nonsynonymous SNV ENSMUST00000121142:c.G520A:p.E174K 14qD2 NA NA chr14 70103849 TCTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 95 2 0 22.130303 0.333333 0.02 -0.236775 18 9 518 253 60 60 0 0 CC 16.845407 56 0 1584 0 KEEP - R3hcc1 YES MNNG_2 chr14 70478861 70478861 C T exonic Egr3 nonsynonymous SNV NM_018781:c.C313T:p.L105F exonic Egr3 nonsynonymous SNV uc007und.1:c.C151T:p.L51F exonic ENSMUSG00000033730 nonsynonymous SNV ENSMUST00000035908:c.C313T:p.L105F 14qD2 NA NA chr14 70478861 AGCxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 118 2 0 39.32222 0.32 0.02 1.337548 34 16 976 453 60 60 0 0 CC 17.434568 58 0 1625 0 KEEP + Egr3 YES MNNG_2 chr14 70534702 70534702 G A intronic Bin3 NA NA intronic Bin3 NA NA intronic ENSMUSG00000022089 NA NA 14qD2 "Score=0.92729;Name=No.27039,chr12:109678091" NA chr14 70534702 GGGxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 79 0 0 27.009293 0.478261 0.02 -0.218972 12 11 341 287 60 60 0 0 GG 11.424143 38 0 1072 0 KEEP + Bin3 YES MNNG_2 chr14 70595268 70595268 G A exonic Sorbs3 nonsynonymous SNV NM_001271407:c.C551T:p.T184I exonic Sorbs3 nonsynonymous SNV uc007unk.1:c.C551T:p.T184I exonic ENSMUSG00000022091 nonsynonymous SNV ENSMUST00000022682:c.C710T:p.T237I 14qD2 NA NA chr14 70595268 AGGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 115 2 0 51.926926 0.488372 0.02 -0.376473 22 21 610 549 60 60 0 0 GG 14.737769 49 0 1350 0 KEEP - Sorbs3 YES MNNG_2 chr14 70776733 70776733 C T intronic Piwil2 NA NA intronic Piwil2 NA NA intronic ENSMUSG00000033644 NA NA 14qD2 NA NA chr14 70776733 TGAxACA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 90 0 0 11.313112 0.294118 0.02 -0.166616 12 5 347 134 60 60 0 0 CC 15.934724 53 0 1480 0 KEEP - Piwil2 YES MNNG_2 chr14 75602591 75602591 C T intronic Lcp1 NA NA intronic Lcp1 NA NA intronic ENSMUSG00000021998 NA NA 14qD3 NA NA chr14 75602591 TCTxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 230 3 0 30.467466 0.27451 0.02 1.230811 37 14 1032 368 60 60 0 0 CC 43.012729 143 0 4027 0 KEEP + Lcp1 YES MNNG_2 chr14 78120715 78120715 G A exonic Enox1 stopgain SNV NM_172813:c.G1896A:p.W632X exonic Enox1 stopgain SNV uc007urz.1:c.G1953A:p.W651X exonic ENSMUSG00000022012 stopgain SNV ENSMUST00000022589:c.G1896A:p.W632X 14qD3 NA NA chr14 78120715 ATGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 83 0 0 40.917674 0.736842 0.02 -0.166615 5 14 144 390 60 60 0 0 GG 15.041061 50 0 1424 0 KEEP + Enox1 YES MNNG_2 chr15 100499849 100499849 C T exonic Bin2 nonsynonymous SNV NM_001270537:c.G76A:p.E26K intergenic "BC141885(dist=18699),Cela1(dist=5004)" NA NA exonic ENSMUSG00000075411 nonsynonymous SNV ENSMUST00000100198:c.G76A:p.E26K 15qF1 NA NA chr15 100499849 TCTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 144 0 0 81.329993 0.484375 0.02 1.134001 33 31 953 858 60 60 0 0 CC 15.024365 50 0 1395 0 KEEP NA Bin2 YES MNNG_2 chr15 100617634 100617634 G A exonic Slc4a8 nonsynonymous SNV NM_021530:c.G614A:p.S205N exonic Slc4a8 nonsynonymous SNV uc007xse.1:c.G614A:p.S205N exonic ENSMUSG00000023032 nonsynonymous SNV ENSMUST00000162049:c.G458A:p.S153N 15qF1 NA NA chr15 100617634 TGAxCGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 71 0 0 53.454123 0.540541 0.02 -0.333151 17 20 474 550 60 60 0 0 GG 9.023729 30 0 849 0 KEEP + Slc4a8 YES MNNG_2 chr15 101522073 101522073 C G intronic Krt6a NA NA intronic Krt6a NA NA intronic ENSMUSG00000058354 NA NA 15qF2 "Score=0.925956;Name=No.57830,chr15:101506958" NA chr15 101522073 ACCxCAC C G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 291 4 1 11.319819 0.069307 0.02 2.585553 94 7 2705 190 60 60 0 0 CC 39.390249 131 0 3636 0 KEEP - Krt6a NO MNNG_2 chr15 101915176 101915176 G A exonic Eif4b nonsynonymous SNV NM_145625:c.G427A:p.E143K exonic Eif4b nonsynonymous SNV uc007xuk.2:c.G427A:p.E143K exonic ENSMUSG00000058655 nonsynonymous SNV ENSMUST00000078635:c.G427A:p.E143K 15qF3 NA NA chr15 101915176 GCAxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387354 0.387407 0.999863 49 0 0 26.447387 0.5 0.02 -0.17539 10 10 294 277 60 60 0 0 GG 6.016762 20 0 576 0 KEEP + Eif4b YES MNNG_2 chr15 102277092 102277092 G A intronic Amhr2 NA NA intronic Amhr2 NA NA intronic ENSMUSG00000023047 NA NA 15qF3 NA NA chr15 102277092 AGGxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 126 2 0 66.724942 0.42623 0.02 1.249861 35 26 1003 724 60 60 0 0 GG 14.738735 49 0 1368 0 KEEP + Amhr2 YES MNNG_2 chr15 10301377 10301377 C T exonic Agxt2 nonsynonymous SNV NM_001031851:c.C109T:p.P37S exonic Agxt2 nonsynonymous SNV uc007vfz.1:c.C109T:p.P37S exonic ENSMUSG00000089678 nonsynonymous SNV ENSMUST00000022858:c.C109T:p.P37S 15qA1 NA NA chr15 10301377 GTGxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043781 0.043787 0.999859 30 2 0 7.053447 0.428571 0.02 -0.061373 4 3 116 77 60 60 0 0 CC 5.41432 18 0 503 0 KEEP + Agxt2 YES MNNG_2 chr15 10967026 10967026 G A exonic Rxfp3 nonsynonymous SNV NM_178717:c.C14T:p.S5F exonic Rxfp3 nonsynonymous SNV uc007vgy.1:c.C14T:p.S5F exonic ENSMUSG00000060735 nonsynonymous SNV ENSMUST00000058007:c.C14T:p.S5F 15qA1 NA NA chr15 10967026 GCAxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.518282 0.522161 0.99257 36 0 0 51.715997 0.75 0.02 -0.210438 6 18 172 490 60 60 0 0 GG 2.406639 8 0 229 0 KEEP - Rxfp3 YES MNNG_2 chr15 11322518 11322518 C T intronic Tars NA NA intronic Tars NA NA intronic ENSMUSG00000022241 NA NA 15qA1 NA NA chr15 11322518 TTTxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 74 0 0 32.592195 0.571429 0.02 -0.184156 9 12 263 331 60 60 0 0 CC 12.627304 42 0 1184 0 KEEP - Tars YES MNNG_2 chr15 12521849 12521849 C T exonic Pdzd2 nonsynonymous SNV NM_001081064:c.G463A:p.V155I exonic Pdzd2 nonsynonymous SNV uc007vhq.1:c.G463A:p.V155I exonic ENSMUSG00000022197 nonsynonymous SNV ENSMUST00000075317:c.G463A:p.V155I 15qA1 NA NA chr15 12521849 TGAxATC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 190 0 0 92.32654 0.457831 0.02 0.870044 45 38 1236 991 60 60 0 0 CC 26.459564 88 0 2393 0 KEEP - Pdzd2 YES MNNG_2 chr15 25730840 25730840 G A intronic Myo10 NA NA intronic Myo10 NA NA intronic ENSMUSG00000022272 NA NA 15qB1 NA NA chr15 25730840 AGAxGGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 85 0 0 51.322991 0.558824 0.02 -0.298133 15 19 436 524 60 60 0 0 GG 12.935387 43 0 1228 0 KEEP + Myo10 YES MNNG_2 chr15 32347211 32347211 C T exonic Sema5a nonsynonymous SNV NM_009154:c.C71T:p.T24I exonic Sema5a nonsynonymous SNV uc007vkp.1:c.C71T:p.T24I exonic ENSMUSG00000022231 nonsynonymous SNV ENSMUST00000100726:c.C71T:p.T24I 15qB3.1 NA NA chr15 32347211 AGAxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693573 0.693668 0.999863 58 0 0 29.764671 0.4 0.02 -0.262756 18 12 483 328 60 60 0 0 CC 6.011567 20 0 534 0 KEEP + Sema5a YES MNNG_2 chr15 34061082 34061082 C T intronic Mtdh NA NA intronic Mtdh NA NA intronic ENSMUSG00000022255 NA NA 15qB3.1 NA NA chr15 34061082 GGGxACA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024073 0.024074 0.999957 37 0 0 8.068349 0.6 0.02 -0.043846 2 3 60 81 60 60 0 0 CC 7.821649 26 0 748 0 KEEP + Mtdh YES MNNG_2 chr15 35230442 35230442 C T exonic Osr2 nonsynonymous SNV NM_054049:c.C388T:p.P130S exonic Osr2 nonsynonymous SNV uc007vmb.1:c.C388T:p.P130S exonic ENSMUSG00000022330 nonsynonymous SNV ENSMUST00000022952:c.C388T:p.P130S 15qB3.1 NA NA chr15 35230442 GATxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 156 2 0 111.058469 0.518072 0.02 0.968301 40 43 1157 1156 60 60 0 0 CC 17.084047 57 0 1587 0 KEEP + Osr2 YES MNNG_2 chr15 48190951 48190951 G A exonic Csmd3 nonsynonymous SNV NM_001081391:c.C923T:p.S308F exonic Csmd3 nonsynonymous SNV uc007vqu.2:c.C923T:p.S308F exonic ENSMUSG00000022311 nonsynonymous SNV ENSMUST00000022923:c.C923T:p.S308F 15qB3.3 NA NA chr15 48190951 CCAxATA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 132 0 0 43.36283 0.425 0.02 -0.350765 23 17 654 471 60 60 0 0 GG 24.666613 82 0 2337 0 KEEP - Csmd3 YES MNNG_2 chr15 5192934 5192934 C T exonic Ptger4 nonsynonymous SNV NM_001136079:c.G203A:p.G68D exonic Ptger4 nonsynonymous SNV uc007vcy.2:c.G278A:p.G93D exonic ENSMUSG00000039942 nonsynonymous SNV ENSMUST00000047379:c.G278A:p.G93D 15qA1 NA NA chr15 5192934 GTGxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 127 0 0 90.050568 0.454545 0.02 1.118349 42 35 1195 964 60 60 0 0 CC 13.233945 44 0 1215 0 KEEP - Ptger4 YES MNNG_2 chr15 6765791 6765791 T C exonic Osmr synonymous SNV NM_011019:c.A2496G:p.P832P exonic Osmr synonymous SNV uc007vdt.2:c.A2496G:p.P832P exonic ENSMUSG00000022146 synonymous SNV ENSMUST00000022746:c.A2496G:p.P832P 15qA1 NA NA chr15 6765791 GATxGGC T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.4905 0.490544 0.999909 52 0 0 68.734984 1 0.02 -0.201536 0 23 0 578 0 60 0 0 TT 7.206121 24 0 639 0 KEEP - Osmr NO MNNG_2 chr15 89195717 89195717 C T exonic Ncaph2 synonymous SNV NM_001115132:c.C792T:p.P264P exonic Ncaph2 synonymous SNV uc007xgg.2:c.C792T:p.P264P exonic ENSMUSG00000008690 synonymous SNV ENSMUST00000036987:c.C699T:p.P233P 15qE3 NA NA chr15 89195717 GCCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.22747 0.229173 0.99257 24 0 0 18.737708 0.466667 0.02 -0.131542 8 7 226 199 60 60 0 0 CC 2.40639 8 0 224 0 KEEP + Ncaph2 YES MNNG_2 chr15 8952035 8952035 G A exonic Ranbp3l nonsynonymous SNV NM_198024:c.G271A:p.A91T exonic Ranbp3l nonsynonymous SNV uc007vfb.1:c.G271A:p.A91T exonic ENSMUSG00000048424 nonsynonymous SNV ENSMUST00000053308:c.G271A:p.A91T 15qA1 NA NA chr15 8952035 GTGxCAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 275 9 0 83.29242 0.4125 0.02 0.967419 47 33 1361 911 60 60 0 0 GG 40.936708 146 1 4043 28 KEEP + Ranbp3l YES MNNG_2 chr15 92140489 92140489 G C exonic Cntn1 nonsynonymous SNV NM_001159647:c.G2529C:p.Q843H exonic Cntn1 nonsynonymous SNV uc007xik.2:c.G2529C:p.Q843H exonic ENSMUSG00000055022 nonsynonymous SNV ENSMUST00000000109:c.G2529C:p.Q843H 15qE3 NA NA chr15 92140489 TCAxGTG G C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 63 0 0 17.804812 0.470588 0.02 -0.149009 9 8 255 191 60 60 0 0 GG 11.731303 39 0 1096 0 KEEP + Cntn1 NO MNNG_2 chr15 9438147 9438147 C T intronic Il7r NA NA intronic Il7r NA NA intronic ENSMUSG00000003882 NA NA 15qA1 NA NA chr15 9438147 TGGxAAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260941 0.260965 0.999909 43 0 0 14.664784 0.375 0.02 -0.140308 10 6 288 164 60 60 0 0 CC 7.219859 24 0 689 0 KEEP - Il7r YES MNNG_2 chr15 97591145 97591145 G A exonic Rapgef3 nonsynonymous SNV NM_001177810:c.C536T:p.A179V exonic Rapgef3 nonsynonymous SNV uc007xkz.2:c.C536T:p.A179V exonic ENSMUSG00000022469 nonsynonymous SNV ENSMUST00000153464:c.C377T:p.A126V 15qF1 NA NA chr15 97591145 TGGxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.799738 0.800245 0.999366 53 2 0 37.273203 0.428571 0.02 -0.306856 20 15 550 405 60 60 0 0 GG 5.111456 17 0 458 0 KEEP - Rapgef3 YES MNNG_2 chr15 97811340 97811340 G A intronic Col2a1 NA NA intronic Col2a1 NA NA intronic ENSMUSG00000022483 NA NA 15qF1 NA NA chr15 97811340 AAAxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.99986 51 0 0 34.95229 0.482759 0.02 -0.254253 15 14 409 370 60 60 0 0 GG 5.709867 19 0 488 0 KEEP - Col2a1 YES MNNG_2 chr15 97999899 97999899 G T UTR3 AI836003 NA NA UTR3 AI836003 NA NA UTR3 ENSMUSG00000029875 NA NA 15qF1 NA NA chr15 97999899 CCAxGGC G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 154 1 0 82.592854 0.492308 0.02 1.125261 33 32 939 869 60 60 0 0 GG 19.5524 65 0 1832 0 KEEP + AI836003 NO MNNG_2 chr15 98287115 98287115 G A exonic Olfr281 nonsynonymous SNV NM_146280:c.G373A:p.A125T exonic Olfr281 nonsynonymous SNV uc007xmn.1:c.G373A:p.A125T exonic ENSMUSG00000032987 nonsynonymous SNV ENSMUST00000054181:c.G373A:p.A125T 15qF1 NA NA chr15 98287115 GCGxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 229 0 0 121.102782 0.494737 0.02 0.951849 48 47 1363 1273 60 60 0 0 GG 32.760344 119 1 3238 28 KEEP + Olfr281 YES MNNG_2 chr15 98462976 98462976 G A intronic Cacnb3 NA NA intronic Cacnb3 NA NA intronic ENSMUSG00000003352 NA NA 15qF1 NA NA chr15 98462976 CAAxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 98 0 0 50.777345 0.542857 0.02 -0.306926 16 19 469 522 60 60 0 0 GG 15.037603 50 0 1403 0 KEEP + Cacnb3 YES MNNG_2 chr15 98675069 98675069 G A exonic Kmt2d nonsynonymous SNV NM_001033276:c.C12640T:p.P4214S exonic Mll2 nonsynonymous SNV uc007xoc.2:c.C12640T:p.P4214S exonic ENSMUSG00000048154 nonsynonymous SNV ENSMUST00000023741:c.C12640T:p.P4214S 15qF1 NA NA chr15 98675069 GGGxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 200 1 0 115.72095 0.464646 0.02 0.818644 53 46 1505 1235 60 60 0 0 GG 23.458088 78 0 2157 0 KEEP - Kmt2d YES MNNG_2 chr15 98680482 98680482 G A exonic Kmt2d nonsynonymous SNV NM_001033276:c.C9391T:p.P3131S exonic Mll2 nonsynonymous SNV uc007xoc.2:c.C9391T:p.P3131S exonic ENSMUSG00000048154 nonsynonymous SNV ENSMUST00000023741:c.C9391T:p.P3131S 15qF1 NA NA chr15 98680482 TGGxGGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 255 2 0 115.42005 0.423423 0.02 2.605511 64 47 1855 1259 60 60 0 0 GG 28.568072 95 0 2648 0 KEEP - Kmt2d YES MNNG_2 chr15 99110521 99110521 G A exonic Fam186b synonymous SNV NM_001081254:c.C1354T:p.L452L exonic Fam186b synonymous SNV uc007xpf.1:c.C1354T:p.L452L exonic ENSMUSG00000078907 synonymous SNV ENSMUST00000109100:c.C1354T:p.L452L 15qF1 NA NA chr15 99110521 ACAxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 150 0 0 102.515057 0.47619 0.02 1.013212 44 40 1269 1087 60 60 0 0 GG 13.234313 44 0 1234 0 KEEP - Fam186b YES MNNG_2 chr15 99569999 99569999 G A intronic Cers5 NA NA intronic Lass5 NA NA intronic ENSMUSG00000023021 NA NA 15qF1 NA NA chr15 99569999 GGAxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 38 0 0 23.314518 0.45 0.02 -0.175399 11 9 327 250 60 60 0 0 GG 5.108393 17 0 473 0 KEEP - Cers5 YES MNNG_2 chr16 10511445 10511445 G A exonic Ciita nonsynonymous SNV NM_001243760:c.G1727A:p.R576H exonic Ciita nonsynonymous SNV uc007ydq.1:c.G1730A:p.R577H exonic ENSMUSG00000022504 nonsynonymous SNV ENSMUST00000023147:c.G1499A:p.R500H 16qA1 NA NA chr16 10511445 GCCxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 195 4 0 97.072193 0.347458 0.02 2.151765 77 41 2024 1106 60 60 0 0 GG 16.812047 56 0 1364 0 KEEP + Ciita YES MNNG_2 chr16 16923764 16923764 G A exonic Ppm1f synonymous SNV NM_176833:c.G1008A:p.G336G exonic Ppm1f synonymous SNV uc007yjo.2:c.G1008A:p.G336G exonic ENSMUSG00000026181 synonymous SNV ENSMUST00000167530:c.G1008A:p.G336G 16qA3 NA NA chr16 16923764 TGGxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800148 0.800245 0.999879 65 0 0 45.776919 0.485714 0.02 -0.306942 18 17 524 482 60 60 0 0 GG 6.315859 21 0 575 0 KEEP + Ppm1f YES MNNG_2 chr16 19065758 19065758 A G intergenic "Hira(dist=95357),Olfr164(dist=220129)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076931 synonymous SNV ENSMUST00000103743:c.T15C:p.T5T 16qA3 NA NA chr16 19065758 GGGxGTG A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 38 0 0 12.739126 0.333333 0.02 -0.131551 10 5 288 145 60 60 0 0 AA 5.414641 18 0 509 0 KEEP - Hira NO MNNG_2 chr16 19949706 19949706 G A exonic Klhl6 synonymous SNV NM_183390:c.C1182T:p.S394S exonic Klhl6 synonymous SNV uc007ypg.2:c.C1182T:p.S394S exonic ENSMUSG00000043008 synonymous SNV ENSMUST00000058839:c.C1182T:p.S394S 16qA3 NA NA chr16 19949706 GGAxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 74 2 0 38.741539 0.8125 0.02 -0.140299 3 13 88 359 60 60 0 0 GG 14.13736 47 0 1321 0 KEEP - Klhl6 YES MNNG_2 chr16 27925814 27925814 A T ncRNA_exonic Gm10823 NA NA ncRNA_exonic Gm10823 NA NA intergenic "ENSMUSG00000038127(dist=473510),ENSMUSG00000022523(dist=234392)" NA NA 16qB2 NA NA chr16 27925814 TCAxCAT A T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 73 0 0 14.016945 0.315789 0.02 -0.16659 13 6 352 163 60 60 0 0 AA 12.931354 43 0 1189 0 KEEP + Gm10823 NO MNNG_2 chr16 33966937 33966937 A G exonic Umps nonsynonymous SNV NM_009471:c.T131C:p.V44A exonic Umps nonsynonymous SNV uc007zap.1:c.T131C:p.V44A exonic ENSMUSG00000022814 nonsynonymous SNV ENSMUST00000023510:c.T131C:p.V44A 16qB3 NA NA chr16 33966937 GACxCGA A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 150 6 0 121.462018 0.676056 0.02 1.163077 23 48 628 1181 60 60 0 0 AA 18.038813 60 0 1589 0 KEEP - Umps NO MNNG_2 chr16 36919486 36919486 G A exonic Golgb1 synonymous SNV NM_030035:c.G8223A:p.K2741K exonic Golgb1 synonymous SNV uc007zdh.2:c.G8223A:p.K2741K exonic ENSMUSG00000034243 synonymous SNV ENSMUST00000039855:c.G8223A:p.K2741K 16qB3 NA NA chr16 36919486 GAAxTAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522089 0.522161 0.999863 45 0 0 43.988541 0.666667 0.02 -0.210418 8 16 226 430 60 60 0 0 GG 6.015836 20 0 560 0 KEEP + Golgb1 YES MNNG_2 chr16 45824954 45824954 G A exonic Phldb2 nonsynonymous SNV NM_001252442:c.C1241T:p.S414F exonic Phldb2 nonsynonymous SNV uc007zjb.2:c.C1241T:p.S414F exonic ENSMUSG00000033149 nonsynonymous SNV ENSMUST00000036355:c.C1241T:p.S414F 16qB5 NA NA chr16 45824954 ATGxAGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851873 0.851984 0.999869 63 0 0 44.315497 0.473684 0.02 -0.332627 20 18 582 472 60 60 0 0 GG 6.311044 21 0 577 0 KEEP - Phldb2 YES MNNG_2 chr16 48288018 48288018 G A exonic Dppa4 nonsynonymous SNV NM_001018002:c.G52A:p.V18M exonic Dppa4 nonsynonymous SNV uc007zjl.1:c.G52A:p.V18M exonic ENSMUSG00000058550 nonsynonymous SNV ENSMUST00000050705:c.G52A:p.V18M 16qB5 NA NA chr16 48288018 GAAxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 132 2 0 50.838655 0.465116 0.02 -0.385785 23 20 652 542 60 60 0 0 GG 21.345538 71 0 1952 0 KEEP + Dppa4 YES MNNG_2 chr16 52033206 52033206 G A exonic Cblb nonsynonymous SNV NM_001033238:c.G71A:p.G24E exonic Cblb nonsynonymous SNV uc007zld.1:c.G71A:p.G24E exonic ENSMUSG00000022637 nonsynonymous SNV ENSMUST00000023313:c.G71A:p.G24E 16qB5 NA NA chr16 52033206 TGGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 50 0 0 6.501712 0.25 0.02 -0.105207 9 3 252 80 60 60 0 0 GG 8.661277 29 0 792 0 KEEP + Cblb YES MNNG_2 chr16 60005503 60005503 G A exonic Epha6 nonsynonymous SNV NM_007938:c.C1754T:p.S585F exonic Epha6 nonsynonymous SNV uc007zpo.1:c.C1754T:p.S585F exonic ENSMUSG00000055540 nonsynonymous SNV ENSMUST00000068860:c.C1754T:p.S585F 16qC1.3 "Score=0.945363;Name=No.62948,chr3:21651987" NA chr16 60005503 GAGxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 59 2 0 46.52801 0.727273 0.02 -0.192925 6 16 175 445 60 60 0 0 GG 9.324409 31 0 871 0 KEEP - Epha6 YES MNNG_2 chr16 64856222 64856222 G A UTR3 Cggbp1 NA NA UTR3 Cggbp1 NA NA UTR3 ENSMUSG00000054604 NA NA 16qC1.3 NA NA chr16 64856222 GTTxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457737 0.457757 0.999957 54 2 0 37.80911 0.636364 0.02 -0.192904 8 14 229 374 60 60 0 0 GG 7.821517 26 0 744 0 KEEP + Cggbp1 YES MNNG_2 chr16 85173763 85173763 G A exonic App nonsynonymous SNV NM_001198823:c.C41T:p.T14M exonic App nonsynonymous SNV uc007ztm.2:c.C41T:p.T14M exonic ENSMUSG00000022892 nonsynonymous SNV ENSMUST00000005406:c.C41T:p.T14M 16qC3.3 NA NA chr16 85173763 ACCxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05402 0.054137 0.997832 32 0 0 21.129316 0.875 0.02 -0.07014 1 7 24 191 60 60 0 0 GG 4.803174 16 0 395 0 KEEP - App YES MNNG_2 chr16 85796128 85796128 G A exonic Adamts1 synonymous SNV NM_009621:c.C2425T:p.L809L exonic Adamts1 synonymous SNV uc012aho.1:c.C2425T:p.L809L exonic ENSMUSG00000022893 synonymous SNV ENSMUST00000023610:c.C2425T:p.L809L 16qC3.3 NA NA chr16 85796128 CCAxCGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 106 0 0 12.060904 0.1875 0.02 -0.280604 26 6 750 159 60 60 0 0 GG 18.649606 62 0 1747 0 KEEP - Adamts1 YES MNNG_2 chr16 87427885 87427885 G A exonic Ltn1 synonymous SNV NM_001081068:c.C195T:p.F65F exonic Ltn1 synonymous SNV uc007zug.1:c.C195T:p.F65F exonic ENSMUSG00000052299 synonymous SNV ENSMUST00000039449:c.C195T:p.F65F 16qC3.3 NA NA chr16 87427885 TCGxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 79 4 0 28.530497 0.478261 0.02 -0.201695 12 11 348 302 60 60 0 0 GG 12.633347 42 0 1185 0 KEEP - Ltn1 YES MNNG_2 chr17 13291072 13291072 T C ncRNA_exonic Gm11166 NA NA UTR5 Ttll2 NA NA intergenic "ENSMUSG00000055602(dist=15725),ENSMUSG00000067049(dist=10411)" NA NA 17qA1 "Score=0.988245;Name=No.65318,chr17:13509436" NA chr17 13291072 TTCxGTC T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 91 0 31 10.649445 0.214286 0.02 -0.245434 22 6 595 141 46 43 0 0 TT 12.631366 42 0 1141 0 KEEP + Gm11166 NO MNNG_2 chr17 14333547 14333547 C T exonic Dact2 nonsynonymous SNV NM_172826:c.G1397A:p.G466D exonic Dact2 nonsynonymous SNV uc008amv.2:c.G1397A:p.G466D exonic ENSMUSG00000048826 nonsynonymous SNV ENSMUST00000053218:c.G1397A:p.G466D 17qA2 NA NA chr17 14333547 TCAxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 191 0 0 98.804019 0.438202 0.02 1.004444 50 39 1406 1067 60 60 1 0 CC 24.362612 81 0 2238 0 KEEP - Dact2 YES MNNG_2 chr17 15681673 15681673 C T exonic Prdm9 nonsynonymous SNV NM_144809:c.G1808A:p.G603E exonic Prdm9 nonsynonymous SNV uc008aor.2:c.G1259A:p.G420E exonic ENSMUSG00000051977 nonsynonymous SNV ENSMUST00000167994:c.G1808A:p.G603E 17qA2 NA NA chr17 15681673 CGCxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 109 1 44 33.613432 0.40625 0.02 -0.280626 19 13 551 368 60 60 0 0 CC 14.737387 49 0 1362 0 KEEP - Prdm9 YES MNNG_2 chr17 15907256 15907256 C T exonic Chd1 nonsynonymous SNV NM_007690:c.C5105T:p.P1702L exonic Chd1 nonsynonymous SNV uc008aou.2:c.C5105T:p.P1702L exonic ENSMUSG00000023852 nonsynonymous SNV ENSMUST00000024627:c.C5105T:p.P1702L 17qA2 NA NA chr17 15907256 CGCxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 52 2 0 14.877063 0.4 0.02 -0.131542 9 6 262 164 60 60 0 0 CC 8.721763 29 0 808 0 KEEP + Chd1 YES MNNG_2 chr17 18393103 18393103 C T exonic Vmn2r94 nonsynonymous SNV NM_001104543:c.G1295A:p.G432D exonic Vmn2r94 nonsynonymous SNV uc009vax.1:c.G1295A:p.G432D exonic ENSMUSG00000090417 nonsynonymous SNV ENSMUST00000172190:c.G1295A:p.G432D 17qA3.2 NA NA chr17 18393103 AGAxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 297 1 0 49.277254 0.416667 0.02 -0.420832 28 20 794 539 60 60 0 0 CC 64.956061 216 0 5975 0 KEEP - Vmn2r94 YES MNNG_2 chr17 18843986 18843986 G A intergenic "Vmn2r96(dist=108865),Vmn2r97(dist=207300)" NA NA intergenic "Vmn2r96(dist=108865),Vmn2r97(dist=207300)" NA NA intergenic "ENSMUSG00000091679(dist=108865),ENSMUSG00000091491(dist=207300)" NA NA 17qA3.2 "Score=0.904979;Name=No.65453,chr17:18717391" NA chr17 18843986 CTAxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 161 0 9 52.392629 0.555556 0.02 -0.315663 16 20 453 536 60 60 0 0 GG 33.363432 111 0 3038 0 KEEP NA Vmn2r96 YES MNNG_2 chr17 21641961 21641961 G A exonic Zfp53 nonsynonymous SNV NM_013843:c.G170A:p.G57E exonic "KRAZ1,Zfp53" nonsynonymous SNV uc008aqy.1:c.G170A:p.G57E exonic ENSMUSG00000057409 nonsynonymous SNV ENSMUST00000076664:c.G170A:p.G57E 17qA3.2 NA NA chr17 21641961 TTGxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 111 1 0 31.028444 0.461538 0.02 -0.227995 14 12 402 331 60 60 0 0 GG 23.11201 77 0 2119 0 KEEP + Zfp53 YES MNNG_2 chr17 23769515 23769515 C T splicing Mmp25(NM_001033339:exon7:c.1085+1G>A) NA NA splicing "Mmp25(uc008asq.1:exon7:c.1085+1G>A,uc012alw.1:exon7:c.452+1G>A)" NA NA splicing ENSMUSG00000023903(ENSMUST00000024696:exon7:c.1085+1G>A) NA NA 17qA3.3 NA NA chr17 23769515 TTAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 255 4 0 164.552046 0.462069 0.02 2.200168 78 67 2180 1761 60 60 0 0 CC 19.248879 64 0 1760 0 KEEP - Mmp25 YES MNNG_2 chr17 23879158 23879158 C T intronic Kremen2 NA NA intronic Kremen2 NA NA intronic ENSMUSG00000040680 NA NA 17qA3.3 NA NA chr17 23879158 CGCxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800148 0.800245 0.999879 63 0 0 43.322136 0.470588 0.02 -0.30693 18 16 515 459 60 60 0 0 CC 6.617521 22 0 615 0 KEEP - Kremen2 YES MNNG_2 chr17 23961023 23961023 C T exonic Srrm2 nonsynonymous SNV NM_175229:c.C7750T:p.H2584Y exonic Srrm2 nonsynonymous SNV uc008ato.1:c.C7750T:p.H2584Y exonic ENSMUSG00000039218 nonsynonymous SNV ENSMUST00000088621:c.C7750T:p.H2584Y 17qA3.3 "Score=0.964215;Name=No.65023,chr1:55184140" NA chr17 23961023 AGTxACT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976864 0.976865 0.999999 104 2 0 41.475539 0.395349 0.02 1.212973 26 17 738 459 60 60 0 0 CC 10.82107 36 0 1011 0 KEEP + Srrm2 YES MNNG_2 chr17 24009520 24009520 C T intronic Prss21 NA NA intronic Prss21 NA NA intronic ENSMUSG00000024116 NA NA 17qA3.3 NA NA chr17 24009520 GCTxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851974 0.851984 0.999988 75 0 0 35.147261 0.4 0.02 -0.333234 21 14 601 387 60 60 0 0 CC 8.122883 27 0 784 0 KEEP + Prss21 YES MNNG_2 chr17 24344905 24344905 C T exonic Ntn3 nonsynonymous SNV NM_010947:c.G956A:p.R319K exonic Ntn3 nonsynonymous SNV uc008auy.1:c.G956A:p.R319K exonic ENSMUSG00000079662 nonsynonymous SNV ENSMUST00000024931:c.G956A:p.R319K 17qA3.3 NA NA chr17 24344905 CATxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877593 0.877708 0.999869 63 0 0 49.818866 0.5 0.02 -0.350774 19 19 556 522 60 60 0 0 CC 6.317063 21 0 599 0 KEEP - Ntn3 YES MNNG_2 chr17 24555172 24555172 C T intronic Rnps1 NA NA intronic Rnps1 NA NA intronic ENSMUSG00000034681 NA NA 17qA3.3 NA NA chr17 24555172 CCTxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999988 40 0 0 7.03189 0.375 0.02 -0.070155 5 3 150 79 60 60 0 0 CC 8.122204 27 0 778 0 KEEP + Rnps1 YES MNNG_2 chr17 24641242 24641242 C T exonic Caskin1 synonymous SNV NM_027937:c.C2058T:p.H686H exonic Caskin1 synonymous SNV uc008awo.1:c.C1845T:p.H615H exonic ENSMUSG00000033597 synonymous SNV ENSMUST00000115347:c.C1845T:p.H615H 17qA3.3 NA NA chr17 24641242 CCAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 145 0 0 107.716825 0.554054 0.02 1.037987 33 41 936 1103 60 60 0 0 CC 16.225314 54 0 1459 0 KEEP + Caskin1 YES MNNG_2 chr17 24648262 24648262 C T exonic Traf7 synonymous SNV NM_001172114:c.G1221A:p.Q407Q exonic Traf7 synonymous SNV uc008aws.2:c.G1221A:p.Q407Q exonic ENSMUSG00000052752 synonymous SNV ENSMUST00000163633:c.G1116A:p.Q372Q 17qA3.3 NA NA chr17 24648262 CCCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.582926 0.58293 0.999992 75 4 0 11.55436 0.208333 0.02 -0.227944 19 5 531 145 60 60 0 0 CC 12.333621 41 0 1167 0 KEEP - Traf7 YES MNNG_2 chr17 24712423 24712423 C T exonic Pkd1 synonymous SNV NM_013630:c.C6138T:p.N2046N exonic Pkd1 synonymous SNV uc012amm.1:c.C3102T:p.N1034N exonic ENSMUSG00000032855 synonymous SNV ENSMUST00000035565:c.C6138T:p.N2046N 17qA3.3 NA NA chr17 24712423 GAAxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 55 0 0 25.959249 0.526316 0.02 -0.166594 9 10 249 269 60 60 0 0 CC 8.421442 28 0 770 0 KEEP + Pkd1 YES MNNG_2 chr17 24730168 24730168 C T exonic Pkd1 nonsynonymous SNV NM_013630:c.C11258T:p.S3753F exonic Pkd1 nonsynonymous SNV uc008awv.1:c.C11258T:p.S3753F exonic ENSMUSG00000032855 nonsynonymous SNV ENSMUST00000035565:c.C11258T:p.S3753F 17qA3.3 NA NA chr17 24730168 CTTxTAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 124 2 0 41.727288 0.339623 0.02 1.13291 35 18 1000 479 60 60 0 0 CC 15.041191 50 0 1431 0 KEEP + Pkd1 YES MNNG_2 chr17 24814141 24814141 C T intronic Zfp598 NA NA intronic Zfp598 NA NA intronic ENSMUSG00000041130 NA NA 17qA3.3 NA NA chr17 24814141 GCAxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 114 0 0 77.281137 0.47619 0.02 1.045145 33 30 923 819 60 60 0 0 CC 12.032462 40 0 1134 0 KEEP + Zfp598 YES MNNG_2 chr17 24878860 24878860 C T exonic Msrb1 unknown UNKNOWN exonic Sepx1 unknown UNKNOWN exonic ENSMUSG00000075705 unknown UNKNOWN 17qA3.3 NA NA chr17 24878860 AAGxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 101 2 0 41.189267 0.444444 0.02 -0.315709 20 16 587 443 60 60 0 0 CC 14.137789 47 0 1327 0 KEEP + Msrb1 YES MNNG_2 chr17 25022663 25022663 C T splicing Nubp2(NM_011956:exon3:c.147+1G>A) NA NA splicing Nubp2(uc008ayo.2:exon3:c.147+1G>A) NA NA splicing ENSMUSG00000039183(ENSMUST00000044252:exon3:c.147+1G>A) NA NA 17qA3.3 NA NA chr17 25022663 TCAxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 154 0 0 95.195878 0.452381 0.02 1.056983 46 38 1306 1022 60 60 0 0 CC 15.038439 50 0 1377 0 KEEP - Nubp2 YES MNNG_2 chr17 25024891 25024891 C T intronic Spsb3 NA NA intronic Spsb3 NA NA intronic ENSMUSG00000024160 NA NA 17qA3.3 NA NA chr17 25024891 TAAxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 118 0 0 79.558084 0.477612 0.02 1.108458 35 32 1004 845 60 60 0 0 CC 11.728324 39 0 1073 0 KEEP + Spsb3 YES MNNG_2 chr17 25481702 25481702 C T exonic Tpsab1 synonymous SNV NM_031187:c.G387A:p.V129V exonic Tpsab1 synonymous SNV uc008baq.2:c.G387A:p.V129V exonic ENSMUSG00000024173 synonymous SNV ENSMUST00000025001:c.G498A:p.V166V 17qA3.3 NA NA chr17 25481702 GTTxACA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 78 2 0 33.828119 0.388889 0.02 -0.315689 22 14 641 376 60 60 0 0 CC 9.925601 33 0 933 0 KEEP - Tpsab1 YES MNNG_2 chr17 25530808 25530808 C T exonic Cacna1h nonsynonymous SNV NM_001163691:c.G985A:p.D329N exonic Cacna1h nonsynonymous SNV uc008bav.2:c.G985A:p.D329N exonic ENSMUSG00000024112 nonsynonymous SNV ENSMUST00000092775:c.G985A:p.D329N 17qA3.3 NA NA chr17 25530808 CATxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 131 0 0 65.507187 0.4 0.02 1.116602 39 26 1091 721 60 60 0 0 CC 15.341468 51 0 1444 0 KEEP - Cacna1h YES MNNG_2 chr17 25782267 25782267 C T intronic Lmf1 NA NA exonic Lmf1 synonymous SNV uc008bbg.1:c.C252T:p.G84G intronic ENSMUSG00000002279 NA NA 17qA3.3 NA NA chr17 25782267 AGGxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739582 0.739671 0.999879 65 0 0 30.589681 0.40625 0.02 -0.280302 19 13 556 338 60 60 0 0 CC 6.616699 22 0 617 0 KEEP + Lmf1 YES MNNG_2 chr17 25888222 25888222 C T exonic Msln synonymous SNV NM_018857:c.G777A:p.E259E exonic Msln synonymous SNV uc008bbo.1:c.G777A:p.E259E exonic ENSMUSG00000063011 synonymous SNV ENSMUST00000075884:c.G777A:p.E259E 17qA3.3 NA NA chr17 25888222 GGAxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 216 0 0 151.764927 0.517857 0.02 2.408323 54 58 1567 1578 60 60 0 0 CC 25.268899 84 0 2395 0 KEEP - Msln YES MNNG_2 chr17 26347541 26347541 C T intronic Rgs11 NA NA intronic Rgs11 NA NA intronic ENSMUSG00000024186 NA NA 17qA3.3 NA NA chr17 26347541 TGCxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 246 4 0 116.573196 0.39823 0.02 2.587338 68 45 1959 1281 60 60 0 0 CC 31.209325 104 0 2842 0 KEEP + Rgs11 YES MNNG_2 chr17 27062665 27062665 C T exonic Kifc5b synonymous SNV NM_053173:c.C1812T:p.A604A exonic Kifc5b synonymous SNV uc008ber.1:c.C1812T:p.A604A exonic ENSMUSG00000024301 synonymous SNV ENSMUST00000078961:c.C1812T:p.A604A 17qA3.3 "Score=0.933088;Name=No.65612,chr17:34011507" NA chr17 27062665 GGCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 252 4 0 139.58941 0.536082 0.02 0.943621 45 52 1264 1439 60 60 0 0 CC 37.149284 124 0 3356 0 KEEP + Kifc5b YES MNNG_2 chr17 27285415 27285415 C T splicing Ip6k3(NM_173027:exon6:c.750+1G>A) NA NA splicing Ip6k3(uc008bfl.1:exon6:c.750+1G>A) NA NA splicing ENSMUSG00000024210(ENSMUST00000025046:exon6:c.750+1G>A) NA NA 17qA3.3 NA NA chr17 27285415 CTAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 86 0 0 66.500996 0.595238 0.02 -0.377 17 25 483 669 60 60 0 0 CC 10.225186 34 0 924 0 KEEP - Ip6k3 YES MNNG_2 chr17 27771454 27771454 C T intronic Rps10 NA NA intronic Rps10 NA NA intronic ENSMUSG00000052146 NA NA 17qA3.3 NA NA chr17 27771454 TGGxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024073 0.024074 0.999957 41 0 0 8.168817 0.6 0.02 -0.043843 2 3 56 82 37 60 0 0 CC 7.82084 26 0 730 0 KEEP - Rps10 YES MNNG_2 chr17 29504279 29504279 C T exonic Fgd2 nonsynonymous SNV NM_001159538:c.C751T:p.P251S exonic Fgd2 nonsynonymous SNV uc008bsy.2:c.C166T:p.P56S exonic ENSMUSG00000024013 nonsynonymous SNV ENSMUST00000024810:c.C748T:p.P250S 17qA3.3 NA NA chr17 29504279 ATCxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 178 0 0 113.48274 0.494253 0.02 1.022275 44 43 1267 1192 60 60 0 0 CC 18.948753 63 0 1753 0 KEEP + Fgd2 YES MNNG_2 chr17 29710034 29710034 C T exonic Tbc1d22b synonymous SNV NM_198647:c.C792T:p.T264T exonic Tbc1d22b synonymous SNV uc008btd.1:c.C792T:p.T264T exonic ENSMUSG00000042203 synonymous SNV ENSMUST00000048677:c.C792T:p.T264T 17qA3.3 NA NA chr17 29710034 TACxTAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 81 0 0 21.929778 0.333333 0.02 -0.245558 18 9 528 251 60 60 0 0 CC 12.334001 41 0 1175 0 KEEP + Tbc1d22b YES MNNG_2 chr17 29835687 29835687 C T UTR3 Ccdc167 NA NA UTR3 1110021J02Rik NA NA UTR3 ENSMUSG00000024018 NA NA 17qA3.3 NA NA chr17 29835687 GGCxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 200 3 0 101.154214 0.443182 0.02 1.004264 49 39 1430 1088 60 60 0 0 CC 25.26147 84 0 2326 0 KEEP + Ccdc167 YES MNNG_2 chr17 29979221 29979221 C T exonic Mdga1 synonymous SNV NM_001081160:c.G1740A:p.Q580Q exonic Mdga1 synonymous SNV uc008bto.1:c.G1740A:p.Q580Q exonic ENSMUSG00000043557 synonymous SNV ENSMUST00000073556:c.G1740A:p.Q580Q 17qA3.3 NA NA chr17 29979221 CAGxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 74 0 0 36.878572 0.555556 0.02 -0.236606 12 15 348 378 60 60 0 0 CC 8.080819 27 0 713 0 KEEP - Mdga1 YES MNNG_2 chr17 31345141 31345141 T C exonic Ubash3a synonymous SNV NM_177823:c.T78C:p.D26D exonic Ubash3a synonymous SNV uc008bur.2:c.T78C:p.D26D exonic ENSMUSG00000042345 synonymous SNV ENSMUST00000048656:c.T78C:p.D26D 17qA3.3 NA NA chr17 31345141 GGAxCCC T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999998 107 2 0 94.946128 0.586207 0.02 1.385664 24 34 634 958 60 60 0 0 TT 9.925563 33 0 911 0 KEEP + Ubash3a NO MNNG_2 chr17 31402864 31402864 C T exonic Rsph1 synonymous SNV NM_025290:c.G396A:p.E132E exonic Rsph1 synonymous SNV uc008buv.1:c.G282A:p.E94E exonic ENSMUSG00000024033 synonymous SNV ENSMUST00000097354:c.G282A:p.E94E 17qA3.3 NA NA chr17 31402864 GGTxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 174 4 0 81.553539 0.525424 0.02 1.160408 28 31 787 845 60 60 0 0 CC 25.847419 86 0 2401 0 KEEP - Rsph1 YES MNNG_2 chr17 31459050 31459050 C T exonic Slc37a1 synonymous SNV NM_001242427:c.C570T:p.G190G exonic Slc37a1 synonymous SNV uc008buw.1:c.C570T:p.G190G exonic ENSMUSG00000024036 synonymous SNV ENSMUST00000114536:c.C495T:p.G165G 17qA3.3 NA NA chr17 31459050 TGGxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 216 3 1 87.329237 0.465753 0.02 1.153831 39 34 1081 930 60 70 0 0 CC 28.856007 96 0 2586 0 KEEP + Slc37a1 YES MNNG_2 chr17 32322011 32322011 C T exonic Ephx3 nonsynonymous SNV NM_001033163:c.G1105A:p.E369K exonic Ephx3 nonsynonymous SNV uc008bvy.1:c.G1105A:p.E369K exonic ENSMUSG00000037577 nonsynonymous SNV ENSMUST00000087721:c.G1105A:p.E369K 17qB1 NA NA chr17 32322011 TTTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 82 0 0 74.826124 0.684211 0.02 -0.368004 12 26 315 727 60 60 0 0 CC 8.421696 28 0 781 0 KEEP - Ephx3 YES MNNG_2 chr17 32322027 32322027 C T exonic Ephx3 synonymous SNV NM_001033163:c.G1089A:p.T363T exonic Ephx3 synonymous SNV uc008bvy.1:c.G1089A:p.T363T exonic ENSMUSG00000037577 synonymous SNV ENSMUST00000087721:c.G1089A:p.T363T 17qB1 NA NA chr17 32322027 CAGxGTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934489 0.934492 0.999997 89 0 0 33.585836 0.348837 0.02 -0.402534 28 15 686 385 60 60 0 0 CC 8.718748 29 0 762 0 KEEP - Ephx3 YES MNNG_2 chr17 32458422 32458422 C T UTR3 Akap8l NA NA UTR3 Akap8l NA NA UTR3 ENSMUSG00000002625 NA NA 17qB1 NA NA chr17 32458422 AGCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 98 0 0 58.301594 0.403509 0.02 1.295259 34 23 959 640 60 60 0 0 CC 9.323304 31 0 853 0 KEEP - Akap8l YES MNNG_2 chr17 32681808 32681808 C T intronic Cyp4f16 NA NA intronic Cyp4f16 NA NA intronic ENSMUSG00000048440 NA NA 17qB1 "Score=0.936421;Name=No.65620,chr17:32757533" NA chr17 32681808 CCTxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 208 2 0 65.367298 0.5 0.02 1.150128 25 25 720 685 60 60 0 0 CC 35.496772 118 0 3374 0 KEEP + Cyp4f16 YES MNNG_2 chr17 32812518 32812518 C T exonic Cyp4f40 synonymous SNV NM_001101588:c.C1194T:p.V398V exonic Cyp4f40 synonymous SNV uc012apc.1:c.C1194T:p.V398V exonic ENSMUSG00000090700 synonymous SNV ENSMUST00000165061:c.C1194T:p.V398V 17qB1 NA NA chr17 32812518 GGTxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 145 1 0 126.19028 0.652174 0.02 1.090181 24 45 683 1241 60 60 0 0 CC 19.551428 65 0 1845 0 KEEP + Cyp4f40 YES MNNG_2 chr17 32967054 32967054 C T UTR5 Zfp799 NA NA UTR5 Zfp799 NA NA intergenic "ENSMUSG00000059000(dist=7909),ENSMUSG00000057254(dist=52562)" NA NA 17qB1 NA NA chr17 32967054 TGTxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.943985 0.948402 0.995343 69 0 0 66.057777 0.531915 0.02 -0.420011 22 25 596 682 60 60 0 0 CC 4.208696 14 0 377 0 KEEP - Zfp799 YES MNNG_2 chr17 33471995 33471995 C T exonic Zfp81 synonymous SNV NM_207541:c.G789A:p.R263R exonic Zfp81 synonymous SNV uc008byi.1:c.G789A:p.R263R exonic ENSMUSG00000003929 synonymous SNV ENSMUST00000038373:c.G180A:p.R60R 17qB1 NA NA chr17 33471995 GGCxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 0.999999 58 0 0 6.572858 0.2 0.02 -0.131544 12 3 344 84 60 60 0 0 CC 10.828862 36 0 1013 0 KEEP - Zfp81 YES MNNG_2 chr17 33495598 33495598 C T intronic Zfp81 NA NA intronic Zfp81 NA NA intronic ENSMUSG00000003929 NA NA 17qB1 NA NA chr17 33495598 GTGxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.22917 0.229173 0.999988 48 0 0 26.817122 0.666667 0.02 -0.131516 5 10 147 262 60 60 0 0 CC 8.099829 27 0 718 0 KEEP - Zfp81 YES MNNG_2 chr17 33985308 33985308 C T exonic Cd320 nonsynonymous SNV NM_019421:c.C718T:p.P240S exonic Cd320 nonsynonymous SNV uc008bzv.1:c.C718T:p.P240S exonic ENSMUSG00000002308 nonsynonymous SNV ENSMUST00000002379:c.C718T:p.P240S 17qB1 NA NA chr17 33985308 CCAxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 158 0 0 80.065577 0.469697 0.02 1.098917 35 31 1013 851 60 60 0 0 CC 23.461647 78 0 2180 0 KEEP + Cd320 YES MNNG_2 chr17 34085184 34085184 C T exonic Wdr46 synonymous SNV NM_020603:c.C1132T:p.L378L exonic Wdr46 synonymous SNV uc008cai.1:c.C1132T:p.L378L exonic ENSMUSG00000024312 synonymous SNV ENSMUST00000025170:c.C1132T:p.L378L 17qB1 NA NA chr17 34085184 GGTxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 171 0 0 84.450134 0.533333 0.02 1.160397 28 32 804 872 60 60 0 0 CC 24.967663 83 0 2376 0 KEEP + Wdr46 YES MNNG_2 chr17 34349180 34349180 G T exonic Tap2 nonsynonymous SNV NM_011530:c.G1146T:p.M382I exonic Tap2 nonsynonymous SNV uc008cbx.2:c.G1146T:p.M382I exonic "ENSMUSG00000024339,ENSMUSG00000081512" nonsynonymous SNV ENSMUST00000025197:c.G1146T:p.M382I 17qB1 NA NA chr17 34349180 GATxGCC G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 307 1 0 171.809122 0.461538 0.02 2.110134 77 66 2250 1832 60 60 0 0 GG 30.930914 103 0 2888 0 KEEP + Tap2 NO MNNG_2 chr17 34442973 34442973 T A exonic H2-Eb1 synonymous SNV NM_010382:c.T75A:p.A25A exonic H2-Eb1 synonymous SNV uc008cch.1:c.T75A:p.A25A exonic ENSMUSG00000060586 synonymous SNV ENSMUST00000074557:c.T75A:p.A25A 17qB1 NA NA chr17 34442973 GGCxTTG T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 268 1 0 46.567816 0.23 0.02 0.818778 77 23 2132 590 60 60 0 0 TT 38.485076 128 0 3513 0 KEEP + H2-Eb1 NO MNNG_2 chr17 34577231 34577231 C T intronic BC051142 NA NA intronic "BC051142,IAP" NA NA intronic ENSMUSG00000057246 NA NA 17qB1 NA NA chr17 34577231 CTTxACA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 124 0 0 55.275737 0.512195 0.02 -0.359507 20 21 571 576 60 60 0 0 CC 20.456097 68 0 1953 0 KEEP + BC051142 YES MNNG_2 chr17 34652537 34652537 C T exonic Btnl6 synonymous SNV NM_030747:c.G195A:p.E65E exonic Btnl6 synonymous SNV uc012aqb.1:c.G195A:p.E65E exonic ENSMUSG00000058762 synonymous SNV ENSMUST00000075483:c.G195A:p.E65E 17qB1 "Score=0.897227;Name=No.65646,chr17:34677306" NA chr17 34652537 CAAxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 175 4 0 46.575573 0.377358 0.02 1.230614 33 20 930 523 60 60 0 0 CC 30.376404 101 0 2815 0 KEEP - Btnl6 YES MNNG_2 chr17 34718411 34718411 C T exonic Notch4 nonsynonymous SNV NM_010929:c.C3194T:p.P1065L exonic Notch4 nonsynonymous SNV uc008ccs.1:c.C3194T:p.P1065L exonic ENSMUSG00000015468 nonsynonymous SNV ENSMUST00000015612:c.C3194T:p.P1065L 17qB1 NA NA chr17 34718411 CCCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.735522 0.739671 0.994391 51 0 0 29.736863 0.387097 0.02 -0.280614 19 12 558 330 60 60 0 0 CC 3.910521 13 0 367 0 KEEP + Notch4 YES MNNG_2 chr17 34810145 34810145 C T intronic Tnxb NA NA intronic Tnxb NA NA intronic ENSMUSG00000033327 NA NA 17qB1 NA NA chr17 34810145 GCTxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926639 0.92664 0.999999 88 0 0 76.071373 0.622222 0.02 -0.394095 17 28 472 757 60 60 0 0 CC 10.829828 36 0 1030 0 KEEP + Tnxb YES MNNG_2 chr17 34975674 34975674 C T intronic Dxo NA NA intronic Dom3z NA NA exonic ENSMUSG00000040482 nonsynonymous SNV ENSMUST00000173768:c.C184T:p.P62S 17qB1 NA NA chr17 34975674 GTAxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 195 0 0 63.168708 0.38806 0.02 1.107824 41 26 1124 702 60 60 0 0 CC 31.531603 105 0 2839 0 KEEP + Dxo YES MNNG_2 chr17 34982012 34982012 C T exonic Skiv2l synonymous SNV NM_021337:c.G1575A:p.R525R exonic Skiv2l synonymous SNV uc008cds.1:c.G1575A:p.R525R exonic ENSMUSG00000040356 synonymous SNV ENSMUST00000046022:c.G1575A:p.R525R 17qB1 "Score=0.940185;Name=No.65651,chr17:34906410" NA chr17 34982012 CATxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 115 2 0 73.277267 0.408451 0.02 1.063841 42 29 1210 803 60 60 0 0 CC 12.605797 42 0 1128 0 KEEP - Skiv2l YES MNNG_2 chr17 34982694 34982694 C T exonic Skiv2l nonsynonymous SNV NM_021337:c.G1294A:p.V432I exonic Skiv2l nonsynonymous SNV uc008cds.1:c.G1294A:p.V432I exonic ENSMUSG00000040356 nonsynonymous SNV ENSMUST00000046022:c.G1294A:p.V432I 17qB1 "Score=0.940185;Name=No.65651,chr17:34906410" NA chr17 34982694 CGAxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 67 0 0 39.046729 0.457143 0.02 -0.306885 19 16 540 419 60 60 0 0 CC 8.119382 27 0 725 0 KEEP - Skiv2l YES MNNG_2 chr17 35043366 35043366 C T exonic Ehmt2 synonymous SNV NM_145830:c.C1713T:p.R571R exonic Ehmt2 synonymous SNV uc008cee.1:c.C1611T:p.R537R exonic ENSMUSG00000013787 synonymous SNV ENSMUST00000124846:c.C246T:p.R82R 17qB1 NA NA chr17 35043366 CCGxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 297 9 0 205.594858 0.537931 0.02 2.093154 67 78 1906 2119 60 60 0 0 CC 30.640515 102 0 2862 0 KEEP + Ehmt2 YES MNNG_2 chr17 35107080 35107080 C T exonic Hspa1a synonymous SNV NM_010479:c.G1791A:p.E597E exonic Hspa1a synonymous SNV uc008cep.1:c.G1791A:p.E597E exonic "ENSMUSG00000091971,ENSMUSG00000092609" synonymous SNV ENSMUST00000087328:c.G1791A:p.E597E 17qB1 "Score=0.99307;Name=No.65652,chr17:35093999" NA chr17 35107080 CTCxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0.387407 0 48 0 16 29.725668 0.578947 0.02 -0.175346 8 11 231 301 60 37 1 0 CC 2.707332 9 0 255 0 KEEP - Hspa1a YES MNNG_2 chr17 35579450 35579450 C T exonic "H2-Q7,H2-Q9" synonymous SNV NM_001198560:c.C849T:p.N283N exonic "H2-Q6,H2-Q7,H2-Q9" synonymous SNV uc008chq.1:c.C849T:p.N283N exonic ENSMUSG00000060550 synonymous SNV ENSMUST00000071951:c.C849T:p.N283N 17qB1 "Score=0.969905;Name=No.65659,chr17:35499753" NA chr17 35579450 GAAxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1575 22 182 151.400485 0.168539 0.02 9.714518 370 75 10366 2032 60 60 0 0 CC 263.293243 880 1 24111 11 KEEP + H2-Q7 YES MNNG_2 chr17 36004922 36004922 C T exonic Ppp1r18 nonsynonymous SNV NM_175242:c.C743T:p.P248L exonic 2310014H01Rik nonsynonymous SNV uc008civ.2:c.C743T:p.P248L exonic ENSMUSG00000034595 nonsynonymous SNV ENSMUST00000113814:c.C743T:p.P248L 17qB1 NA NA chr17 36004922 AACxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 49 0 0 33.375215 0.481481 0.02 -0.236731 14 13 403 353 60 60 0 0 CC 5.113781 17 0 480 0 KEEP + Ppp1r18 YES MNNG_2 chr17 36064865 36064865 C T exonic Ppp1r10 synonymous SNV NM_001163818:c.C864T:p.G288G exonic Ppp1r10 synonymous SNV uc008cjj.2:c.C864T:p.G288G exonic ENSMUSG00000039220 synonymous SNV ENSMUST00000087210:c.C864T:p.G288G 17qB1 NA NA chr17 36064865 GGGxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 41 2 0 18.942014 0.444444 0.02 -0.157801 10 8 282 205 60 60 0 0 CC 5.406561 18 0 481 0 KEEP + Ppp1r10 YES MNNG_2 chr17 36203220 36203220 C T intergenic "Gm6034(dist=7630),H2-Bl(dist=13914)" NA NA intronic "H2-T22,H2-T23" NA NA ncRNA_exonic ENSMUSG00000091373 NA NA 17qB1 "Score=0.951462;Name=No.65666,chr17:36245854" NA chr17 36203220 CTCxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1179 9 4 136.342879 0.167526 0.02 8.967249 323 65 9307 1814 60 60 0 0 CC 177.634904 594 1 16474 8 KEEP - Gm6034 YES MNNG_2 chr17 36326974 36326974 C T intronic H2-T3 NA NA ncRNA_intronic H2-T3-like NA NA intronic ENSMUSG00000054128 NA NA 17qB1 NA NA chr17 36326974 TTTxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 234 2 0 51.453656 0.186567 0.02 2.29644 109 25 3118 675 60 60 0 0 CC 20.741818 69 0 1933 0 KEEP - H2-T3 YES MNNG_2 chr17 37094595 37094595 C T exonic Znrd1 nonsynonymous SNV NM_023162:c.G263A:p.G88D exonic Znrd1 nonsynonymous SNV uc008clo.1:c.G263A:p.G88D exonic ENSMUSG00000036315 nonsynonymous SNV ENSMUST00000113669:c.G263A:p.G88D 17qB1 NA NA chr17 37094595 TGAxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.835716 0.835716 1 119 0 0 33.917363 0.378378 0.02 -0.324421 23 14 654 379 60 60 0 0 CC 18.347579 61 0 1693 0 KEEP - Znrd1 YES MNNG_2 chr17 37185434 37185434 C T exonic Gabbr1 nonsynonymous SNV NM_019439:c.C355T:p.P119S exonic Gabbr1 nonsynonymous SNV uc008cmc.1:c.C355T:p.P119S exonic ENSMUSG00000024462 nonsynonymous SNV ENSMUST00000172789:c.C355T:p.P119S 17qB1 NA NA chr17 37185434 CTCxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 67 0 0 39.821199 0.5 0.02 -0.263056 15 15 428 417 60 60 0 0 CC 8.722782 29 0 806 0 KEEP + Gabbr1 YES MNNG_2 chr17 37348727 37348727 C T exonic Olfr95 nonsynonymous SNV NM_146513:c.G70A:p.G24S exonic Olfr95 nonsynonymous SNV uc008cmk.1:c.G70A:p.G24S exonic ENSMUSG00000049561 nonsynonymous SNV ENSMUST00000060728:c.G70A:p.G24S 17qB1 NA NA chr17 37348727 TGCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717217 0.717315 0.999863 63 0 0 22.084138 0.290323 0.02 -0.271866 22 9 637 259 60 60 0 0 CC 6.015976 20 0 562 0 KEEP - Olfr95 YES MNNG_2 chr17 43765290 43765290 C T exonic Tdrd6 synonymous SNV NM_001161366:c.G1815A:p.K605K exonic Tdrd6 synonymous SNV uc008cpi.2:c.G1815A:p.K605K exonic ENSMUSG00000040140 synonymous SNV ENSMUST00000045717:c.G1815A:p.K605K 17qB3 NA NA chr17 43765290 GCAxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 90 3 0 41.202237 0.484848 0.02 -0.315636 17 16 467 435 60 60 0 0 CC 13.534001 45 0 1242 0 KEEP - Tdrd6 YES MNNG_2 chr17 45671783 45671783 C T exonic Tcte1 synonymous SNV NM_013688:c.C363T:p.N121N exonic Tcte1 synonymous SNV uc008cqt.1:c.C363T:p.N121N exonic ENSMUSG00000023949 synonymous SNV ENSMUST00000113547:c.C363T:p.N121N 17qB3 NA NA chr17 45671783 TAAxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 174 0 0 77.65637 0.43662 0.02 1.07263 40 31 1151 840 60 60 0 0 CC 24.356313 81 0 2252 0 KEEP + Tcte1 YES MNNG_2 chr17 45678193 45678193 C T exonic Tcte1 synonymous SNV NM_013688:c.C1402T:p.L468L exonic Tcte1 synonymous SNV uc008cqt.1:c.C1402T:p.L468L exonic "ENSMUSG00000023949,ENSMUSG00000092070" nonsynonymous SNV ENSMUST00000024745:c.G704A:p.R235K 17qB3 NA NA chr17 45678193 GTTxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 72 0 0 57.668534 0.65625 0.02 -0.280537 11 21 301 566 60 60 0 0 CC 9.024526 30 0 852 0 KEEP + Tcte1 YES MNNG_2 chr17 47638290 47638290 C T exonic Taf8 nonsynonymous SNV NM_022015:c.G139A:p.G47R exonic Taf8 nonsynonymous SNV uc008cvh.1:c.G139A:p.G47R exonic ENSMUSG00000023980 nonsynonymous SNV ENSMUST00000067103:c.G139A:p.G47R 17qC NA NA chr17 47638290 ATCxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 51 0 0 9.331216 0.266667 0.02 -0.140316 11 4 317 112 60 60 0 0 CC 8.720711 29 0 791 0 KEEP - Taf8 YES MNNG_2 chr17 48404297 48404297 C T exonic Treml4 nonsynonymous SNV NM_001033922:c.C349T:p.P117S exonic Treml4 nonsynonymous SNV uc008cwz.1:c.C349T:p.P117S exonic ENSMUSG00000051682 nonsynonymous SNV ENSMUST00000059873:c.C361T:p.P121S 17qC NA NA chr17 48404297 TATxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 72 0 0 12.239055 0.333333 0.02 -0.14031 10 5 288 140 60 60 0 0 CC 13.836933 46 0 1298 0 KEEP + Treml4 YES MNNG_2 chr17 5342847 5342847 G A exonic Arid1b synonymous SNV NM_001085355:c.G6495A:p.A2165A exonic Arid1b synonymous SNV uc008aey.1:c.G6495A:p.A2165A exonic ENSMUSG00000069729 synonymous SNV ENSMUST00000077329:c.G1062A:p.A354A 17qA1 NA NA chr17 5342847 GGCxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 66 0 0 41.508153 0.484848 0.02 -0.289236 17 16 419 438 60 60 0 0 GG 9.017096 30 0 773 0 KEEP + Arid1b YES MNNG_2 chr17 54433114 54433114 C A intronic Slc5a7 NA NA intronic Slc5a7 NA NA intronic ENSMUSG00000023945 NA NA 17qC NA NA chr17 54433114 AGTxACT C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 76 0 0 25.658047 0.526316 0.02 -0.166604 9 10 261 266 60 60 0 0 CC 14.438811 48 0 1361 0 KEEP - Slc5a7 NO MNNG_2 chr17 56330098 56330098 C T intronic Dpp9 NA NA intronic Dpp9 NA NA intronic ENSMUSG00000001229 NA NA 17qD NA NA chr17 56330098 AAGxAGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 49 0 0 24.042415 0.5 0.02 -0.175341 10 10 293 253 60 60 0 0 CC 6.91755 23 0 637 0 KEEP - Dpp9 YES MNNG_2 chr17 56398166 56398166 C T exonic Fem1a nonsynonymous SNV NM_010192:c.C1835T:p.A612V exonic Fem1a nonsynonymous SNV uc008dbk.2:c.C1835T:p.A612V exonic ENSMUSG00000043683 nonsynonymous SNV ENSMUST00000060253:c.C1835T:p.A612V 17qD "Score=0.966239;Name=No.14110,chr11:29722585" NA chr17 56398166 TGGxTAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 74 0 0 34.946852 0.4 0.02 -0.306933 21 14 609 385 60 60 0 0 CC 9.023823 30 0 841 0 KEEP + Fem1a YES MNNG_2 chr17 56452646 56452646 C T exonic Uhrf1 nonsynonymous SNV NM_001111078:c.C1060T:p.L354F exonic Uhrf1 nonsynonymous SNV uc008dbp.2:c.C1060T:p.L354F exonic ENSMUSG00000001228 nonsynonymous SNV ENSMUST00000001258:c.C1060T:p.L354F 17qD NA NA chr17 56452646 CCGxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.639957 0.641347 0.997832 46 0 0 34.140995 0.518519 0.02 -0.245385 13 14 370 356 60 60 0 0 CC 4.812591 16 0 447 0 KEEP + Uhrf1 YES MNNG_2 chr17 56924691 56924691 C T intronic Rfx2 NA NA intronic Rfx2 NA NA intronic ENSMUSG00000024206 NA NA 17qD NA NA chr17 56924691 TGTxTAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948336 0.948402 0.999931 88 4 0 47.066703 0.395833 0.02 -0.420922 29 19 843 520 60 60 0 0 CC 7.520519 25 0 717 0 KEEP - Rfx2 YES MNNG_2 chr17 57020329 57020329 C T intronic 1700061G19Rik NA NA intronic 1700061G19Rik NA NA intronic ENSMUSG00000024209 NA NA 17qD NA NA chr17 57020329 AGCxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 50 2 0 32.352693 0.647059 0.02 -0.149086 6 11 168 319 60 60 0 0 CC 8.422418 28 0 785 0 KEEP + 1700061G19Rik YES MNNG_2 chr17 57035741 57035741 C T splicing Mllt1(NM_022328:exon9:c.1163-1G>A) NA NA splicing Mllt1(uc008ddk.1:exon9:c.1163-1G>A) NA NA splicing ENSMUSG00000024212(ENSMUST00000025053:exon9:c.1163-1G>A) NA NA 17qD NA NA chr17 57035741 GTCxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 75 2 0 67.428909 0.648649 0.02 -0.324388 13 24 368 664 60 60 0 0 CC 9.325204 31 0 880 0 KEEP - Mllt1 YES MNNG_2 chr17 57600134 57600134 G A exonic Emr1 synonymous SNV NM_010130:c.G2376A:p.E792E exonic Emr1 synonymous SNV uc008det.2:c.G2376A:p.E792E exonic ENSMUSG00000004730 synonymous SNV ENSMUST00000004850:c.G2376A:p.E792E 17qD NA NA chr17 57600134 AGAxACG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 139 0 0 40.938811 0.432432 0.02 -0.324482 21 16 619 443 60 60 0 0 GG 19.553686 65 0 1867 0 KEEP + Emr1 YES MNNG_2 chr17 6198743 6198743 C T exonic Tulp4 synonymous SNV NM_001103181:c.C36T:p.L12L exonic Tulp4 synonymous SNV uc008agf.2:c.C36T:p.L12L exonic ENSMUSG00000034377 synonymous SNV ENSMUST00000039655:c.C615T:p.L205L 17qA1 NA NA chr17 6198743 CCTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 83 2 0 54.023998 0.526316 0.02 -0.33317 18 20 508 559 60 60 0 0 CC 10.216788 34 0 940 0 KEEP + Tulp4 YES MNNG_2 chr17 64482796 64482796 G A exonic Fert2 synonymous SNV NM_008000:c.G948A:p.L316L exonic Fert2 synonymous SNV uc008dfs.2:c.G948A:p.L316L exonic ENSMUSG00000000127 synonymous SNV ENSMUST00000038080:c.G948A:p.L316L 17qE1.1 NA NA chr17 64482796 CCTxGCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229142 0.229173 0.999863 39 1 0 18.638467 0.466667 0.02 -0.131517 8 7 222 198 60 60 0 0 GG 6.016671 20 0 576 0 KEEP + Fert2 YES MNNG_2 chr17 6457813 6457813 G A intergenic "Tmem181b-ps(dist=7671),Dynlt1f(dist=142983)" NA NA exonic Tmem181a synonymous SNV uc008agu.2:c.C192T:p.N64N exonic ENSMUSG00000079733 synonymous SNV ENSMUST00000115771:c.C309T:p.N103N 17qA1 "Score=0.991392;Name=No.65272,chr17:6219164" NA chr17 6457813 TGGxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 816 5 28 58.085792 0.134199 0.02 4.232694 200 31 5449 828 60 60 0 1 GG 133.588362 445 0 11770 0 KEEP - Tmem181b-ps YES MNNG_2 chr17 68120282 68120282 C T intronic Lama1 NA NA intronic Lama1 NA NA intronic ENSMUSG00000032796 NA NA 17qE1.1 NA NA chr17 68120282 TTTxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9266 0.92664 0.999957 74 0 0 38.505832 0.517241 0.02 -0.39437 14 15 406 401 60 60 0 0 CC 7.815603 26 0 726 0 KEEP + Lama1 YES MNNG_2 chr17 68222342 68222342 C T intronic Arhgap28 NA NA intronic Arhgap28 NA NA intronic ENSMUSG00000024043 NA NA 17qE1.2 NA NA chr17 68222342 GGAxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 82 1 0 17.074899 0.4375 0.02 -0.1403 9 7 263 185 60 60 0 0 CC 16.831302 56 0 1538 0 KEEP - Arhgap28 YES MNNG_2 chr17 69598026 69598026 C T exonic Epb4.1l3 nonsynonymous SNV NM_013813:c.C905T:p.S302F exonic Epb4.1l3 nonsynonymous SNV uc008dkr.1:c.C53T:p.S18F exonic ENSMUSG00000024044 nonsynonymous SNV ENSMUST00000167137:c.C905T:p.S302F 17qE1.3 NA NA chr17 69598026 TCTxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 166 0 0 44.854947 0.409091 0.02 -0.385843 26 18 760 492 60 60 0 0 CC 28.877723 96 0 2719 0 KEEP + Epb4.1l3 YES MNNG_2 chr17 71863581 71863581 C T exonic Ndc80 nonsynonymous SNV NM_023294:c.G711A:p.M237I exonic Ndc80 nonsynonymous SNV uc008dmk.2:c.G711A:p.M237I exonic ENSMUSG00000024056 nonsynonymous SNV ENSMUST00000024851:c.G711A:p.M237I 17qE1.3 "Score=0.929606;Name=No.65846,chr17:95151092" NA chr17 71863581 GGTxATG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 168 2 0 37.66331 0.333333 0.02 -0.429553 32 16 933 433 60 60 0 0 CC 26.765366 89 0 2529 0 KEEP - Ndc80 YES MNNG_2 chr17 72093822 72093822 C T UTR3 BC027072 NA NA UTR3 BC027072 NA NA UTR3 ENSMUSG00000044375 NA NA 17qE1.3 NA NA chr17 72093822 CTTxATG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353898 0.353947 0.999863 48 1 0 29.018126 0.578947 0.02 -0.166531 8 11 233 294 60 60 0 0 CC 6.012193 20 0 562 0 KEEP - BC027072 YES MNNG_2 chr17 73690385 73690385 C T intronic Capn13 NA NA intronic Capn13 NA NA intronic ENSMUSG00000043705 NA NA 17qE2 NA NA chr17 73690385 ATAxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 62 0 0 23.704709 0.6 0.02 -0.131513 6 9 166 238 60 60 0 0 CC 12.030376 40 0 1095 0 KEEP - Capn13 YES MNNG_2 chr17 79269995 79269995 C T exonic Eif2ak2 nonsynonymous SNV NM_011163:c.G574A:p.G192S exonic Eif2ak2 nonsynonymous SNV uc008dph.2:c.G574A:p.G192S exonic ENSMUSG00000024079 nonsynonymous SNV ENSMUST00000024884:c.G574A:p.G192S 17qE3 NA NA chr17 79269995 ACCxATT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 105 4 0 56.841369 0.52381 0.02 -0.376636 20 22 565 590 60 60 0 0 CC 14.426043 48 0 1327 0 KEEP - Eif2ak2 YES MNNG_2 chr17 79451671 79451671 C T exonic Qpct synonymous SNV NM_027455:c.C66T:p.V22V exonic Qpct synonymous SNV uc008dpv.1:c.C66T:p.V22V exonic ENSMUSG00000024084 synonymous SNV ENSMUST00000040789:c.C66T:p.V22V 17qE3 NA NA chr17 79451671 CGTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.973734 0.973965 0.999763 103 0 0 54.182643 0.428571 0.02 1.221681 28 21 814 587 60 60 0 0 CC 10.164197 34 0 930 0 KEEP + Qpct YES MNNG_2 chr17 85109662 85109662 C T exonic Lrpprc nonsynonymous SNV NM_028233:c.G3788A:p.G1263D exonic Lrpprc nonsynonymous SNV uc008dtc.1:c.G3788A:p.G1263D exonic ENSMUSG00000024120 nonsynonymous SNV ENSMUST00000112308:c.G3788A:p.G1263D 17qE4 NA NA chr17 85109662 TTGxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.668518 0.668523 0.999992 86 0 0 53.544132 0.655172 0.02 -0.254301 10 19 284 526 60 60 0 0 CC 12.332129 41 0 1139 0 KEEP - Lrpprc YES MNNG_2 chr17 86874837 86874837 C T intronic Prkce NA NA intronic Prkce NA NA intronic ENSMUSG00000045038 NA NA 17qE4 NA NA chr17 86874837 ATTxCGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 47 0 0 29.817222 0.769231 0.02 -0.114003 3 10 86 281 60 60 0 0 CC 8.422933 28 0 799 0 KEEP + Prkce YES MNNG_2 chr17 88414816 88414816 G A exonic Fbxo11 nonsynonymous SNV NM_001081034:c.C374T:p.A125V exonic Fbxo11 nonsynonymous SNV uc008dvf.1:c.C113T:p.A38V exonic ENSMUSG00000005371 nonsynonymous SNV ENSMUST00000005504:c.C374T:p.A125V 17qE4 NA NA chr17 88414816 GAGxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 182 3 0 62.958571 0.5 0.02 1.150252 25 25 704 661 60 60 0 0 GG 29.213853 102 1 2776 12 KEEP - Fbxo11 YES MNNG_2 chr17 95234491 95234491 C T upstream "2610044O15Rik8,Gm1976" NA NA ncRNA_exonic AK143926 NA NA ncRNA_exonic ENSMUSG00000073366 NA NA 17qE5 "Score=0.900535;Name=No.36064,chr13:74754105" NA chr17 95234491 GGCxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 127 0 0 17.027166 0.153846 0.02 1.311188 44 8 1266 229 70 60 0 0 CC 16.54404 55 0 1546 0 KEEP + 2610044O15Rik8 YES MNNG_2 chr18 12878535 12878535 T C exonic Ttc39c nonsynonymous SNV NM_028341:c.T1052C:p.V351A exonic Ttc39c nonsynonymous SNV uc008ecj.2:c.T1052C:p.V351A exonic ENSMUSG00000024424 nonsynonymous SNV ENSMUST00000025294:c.T1052C:p.V351A 18qA1 NA NA chr18 12878535 ACGxCTG T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 76 0 0 51.011393 0.545455 0.02 -0.298158 15 18 410 523 60 60 0 0 TT 9.022273 30 0 824 0 KEEP + Ttc39c NO MNNG_2 chr18 15991587 15991587 G A intergenic "Chst9(dist=115032),Cdh2(dist=755799)" NA NA intergenic "Chst9(dist=72921),Cdh2(dist=755799)" NA NA exonic ENSMUSG00000058064 synonymous SNV ENSMUST00000079733:c.G285A:p.R95R 18qA1 NA NA chr18 15991587 GCGxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 420 6 37 191.152267 0.627273 0.02 2.489234 41 69 1178 1898 57 57 0 0 GG 71.286709 237 0 6723 0 KEEP NA Chst9 YES MNNG_2 chr18 20246910 20246910 G A exonic Dsc1 nonsynonymous SNV NM_013504:c.C2008T:p.P670S exonic Dsc1 nonsynonymous SNV uc008eeg.2:c.C2008T:p.P670S exonic ENSMUSG00000044322 nonsynonymous SNV ENSMUST00000025187:c.C2008T:p.P670S 18qA2 NA NA chr18 20246910 TTGxAGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 80 2 0 24.540357 0.37037 0.02 -0.236777 17 10 493 275 60 60 0 0 GG 13.837036 46 0 1299 0 KEEP - Dsc1 YES MNNG_2 chr18 20995489 20995489 T C exonic Trappc8 nonsynonymous SNV NM_177038:c.A2947G:p.T983A exonic Trappc8 nonsynonymous SNV uc012bad.1:c.A2947G:p.T983A exonic ENSMUSG00000033382 nonsynonymous SNV ENSMUST00000025177:c.A2947G:p.T983A 18qA2 NA NA chr18 20995489 CCGxCTT T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 95 2 0 68.982534 0.631579 0.02 -0.341979 14 24 387 684 60 60 0 0 TT 14.135735 47 0 1287 0 KEEP - Trappc8 NO MNNG_2 chr18 24867576 24867576 G A upstream Fhod3 NA NA upstream "FHOS2,Fhod3" NA NA exonic ENSMUSG00000054745 nonsynonymous SNV ENSMUST00000067987:c.C274T:p.P92S 18qA2 NA NA chr18 24867576 CTGxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.690438 0.693668 0.995343 45 0 0 32.783894 0.433333 0.02 -0.263068 17 13 488 355 60 60 0 0 GG 4.209143 14 0 383 0 KEEP NA Fhod3 YES MNNG_2 chr18 35840546 35840546 G A exonic Dnajc18 nonsynonymous SNV NM_029669:c.C823T:p.P275S exonic Dnajc18 nonsynonymous SNV uc008emq.2:c.C823T:p.P275S exonic ENSMUSG00000024350 nonsynonymous SNV ENSMUST00000025208:c.C823T:p.P275S 18qB2 NA NA chr18 35840546 AAGxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 0.999999 70 0 0 48.310068 0.708333 0.02 -0.21045 7 17 204 465 60 60 0 0 GG 10.782681 36 0 982 0 KEEP - Dnajc18 YES MNNG_2 chr18 36197380 36197380 G A intronic Nrg2 NA NA intronic Nrg2 NA NA intronic ENSMUSG00000060275 NA NA 18qB2 NA NA chr18 36197380 CTGxAGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490511 0.490544 0.999931 51 0 0 53.048783 0.782609 0.02 -0.201688 5 18 146 497 60 60 0 0 GG 7.514629 25 0 694 0 KEEP - Nrg2 YES MNNG_2 chr18 36784434 36784434 G A exonic Ankhd1 synonymous SNV NM_175375:c.G2526A:p.Q842Q exonic Ankhd1 synonymous SNV uc008env.2:c.G2526A:p.Q842Q exonic ENSMUSG00000024483 synonymous SNV ENSMUST00000006205:c.G2526A:p.Q842Q 18qB2 NA NA chr18 36784434 ACAxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 47 0 0 38.427465 0.56 0.02 -0.219245 11 14 325 392 60 60 0 0 GG 6.31753 21 0 604 0 KEEP + Ankhd1 YES MNNG_2 chr18 36848518 36848518 A C intronic E230025N22Rik NA NA intronic E230025N22Rik NA NA intronic ENSMUSG00000044719 NA NA 18qB2 NA NA chr18 36848518 AGGxGTT A C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 222 1 0 34.086502 0.173913 0.02 0.978239 76 16 2083 449 60 60 0 0 AA 27.935389 93 0 2538 0 KEEP - E230025N22Rik NO MNNG_2 chr18 36955641 36955641 G A intronic Zmat2 NA NA intronic Zmat2 NA NA intronic ENSMUSG00000001383 NA NA 18qB2 NA NA chr18 36955641 TAAxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 54 0 0 36.674897 0.722222 0.02 -0.157832 5 13 150 351 60 60 0 0 GG 8.723393 29 0 829 0 KEEP + Zmat2 YES MNNG_2 chr18 37875360 37875360 G A exonic Pcdhga7 synonymous SNV NM_033590:c.G765A:p.E255E exonic Pcdhga7 synonymous SNV uc008eqt.1:c.G765A:p.E255E intronic ENSMUSG00000023036 NA NA 18qB3 NA NA chr18 37875360 TGAxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 101 2 0 88.25929 0.688889 0.02 -0.394604 14 31 403 856 60 60 0 0 GG 12.934741 43 0 1221 0 KEEP + Pcdhga7 YES MNNG_2 chr18 37886361 37886361 G A exonic Pcdhga8 nonsynonymous SNV NM_033591:c.G815A:p.G272D exonic Pcdhga8 nonsynonymous SNV uc008eqv.1:c.G815A:p.G272D exonic ENSMUSG00000023036 nonsynonymous SNV ENSMUST00000066149:c.G815A:p.G272D 18qB3 NA NA chr18 37886361 AGGxCGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 168 0 0 66.175306 0.472727 0.02 1.212945 29 26 827 703 60 60 0 0 GG 29.145864 97 0 2625 0 KEEP + Pcdhga8 YES MNNG_2 chr18 38404711 38404711 G A ncRNA_intronic 1700086O06Rik NA NA ncRNA_intronic 1700086O06Rik NA NA exonic ENSMUSG00000066475 nonsynonymous SNV ENSMUST00000085340:c.G230A:p.G77D 18qB3 NA NA chr18 38404711 GGGxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 249 4 12 95.521744 0.580645 0.02 1.04516 26 36 751 967 54 57 0 0 GG 45.374824 151 0 4118 0 KEEP - 1700086O06Rik YES MNNG_2 chr18 42381121 42381121 G C intronic Lars NA NA intronic Lars NA NA intronic ENSMUSG00000024493 NA NA 18qB3 NA NA chr18 42381121 CTGxCCC G C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195062 0.196312 0.993634 32 0 0 6.974173 0.214286 0.02 -0.122708 11 3 305 87 60 60 0 0 GG 3.60908 12 0 331 0 KEEP - Lars NO MNNG_2 chr18 44693919 44693919 G A exonic Mcc synonymous SNV NM_001085374:c.C93T:p.D31D exonic Mcc synonymous SNV uc008euy.1:c.C93T:p.D31D exonic ENSMUSG00000071856 synonymous SNV ENSMUST00000164666:c.C93T:p.D31D 18qB3 NA NA chr18 44693919 AATxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 168 1 0 63.36286 0.472727 0.02 1.115224 29 26 819 675 60 60 0 0 GG 24.964843 83 0 2312 0 KEEP - Mcc YES MNNG_2 chr18 50441213 50441213 G A exonic Fam170a nonsynonymous SNV NM_001004061:c.G271A:p.A91T exonic Fam170a nonsynonymous SNV uc008ewx.1:c.G271A:p.A91T exonic ENSMUSG00000035420 nonsynonymous SNV ENSMUST00000050509:c.G127A:p.A43T 18qD1 NA NA chr18 50441213 GAGxCGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229142 0.229173 0.999863 43 2 0 20.914851 0.533333 0.02 -0.13149 7 8 192 216 60 60 0 0 GG 6.015781 20 0 558 0 KEEP + Fam170a YES MNNG_2 chr18 57890523 57890523 G A exonic 1700011I03Rik synonymous SNV NM_029290:c.G744A:p.K248K exonic 1700011I03Rik synonymous SNV uc008ezg.2:c.G744A:p.K248K exonic ENSMUSG00000058925 synonymous SNV ENSMUST00000079738:c.G744A:p.K248K 18qD3 NA NA chr18 57890523 GAAxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999999 61 0 0 32.792854 0.571429 0.02 -0.192375 9 12 260 333 60 60 0 0 GG 10.52838 35 0 994 0 KEEP + 1700011I03Rik YES MNNG_2 chr18 60977859 60977859 G A exonic Tcof1 synonymous SNV NM_011552:c.C3138T:p.L1046L exonic Tcof1 synonymous SNV uc012bdn.1:c.C2994T:p.L998L exonic ENSMUSG00000024613 synonymous SNV ENSMUST00000097562:c.C2994T:p.L998L 18qE1 NA NA chr18 60977859 GAGxAGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 54 0 0 26.761381 0.526316 0.02 -0.175358 9 10 249 277 60 60 0 0 GG 6.918597 23 0 650 0 KEEP - Tcof1 YES MNNG_2 chr18 61297060 61297060 G A exonic Hmgxb3 nonsynonymous SNV NM_178277:c.C2941T:p.P981S exonic Hmgxb3 nonsynonymous SNV uc008fbr.1:c.C2941T:p.P981S exonic ENSMUSG00000024622 nonsynonymous SNV ENSMUST00000025524:c.C2902T:p.P968S 18qE1 NA NA chr18 61297060 CAGxTAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.550313 0.552887 0.995343 45 0 0 43.330667 0.64 0.02 -0.219197 9 16 253 428 60 60 0 0 GG 4.211044 14 0 391 0 KEEP - Hmgxb3 YES MNNG_2 chr18 61875609 61875609 G A exonic Grpel2 synonymous SNV NM_021296:c.C483T:p.G161G exonic Grpel2 synonymous SNV uc008fco.1:c.C483T:p.G161G exonic ENSMUSG00000024580 synonymous SNV ENSMUST00000062991:c.C483T:p.G161G 18qE1 "Score=0.977599;Name=No.71346,chr7:26203398" NA chr18 61875609 TAGxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 164 0 0 114.313731 0.517647 0.02 1.039523 41 44 1148 1189 60 60 0 0 GG 18.347336 61 0 1690 0 KEEP - Grpel2 YES MNNG_2 chr18 70655768 70655768 G A exonic Stard6 nonsynonymous SNV NM_029019:c.G268A:p.D90N exonic Stard6 nonsynonymous SNV uc008fog.1:c.G268A:p.D90N exonic ENSMUSG00000079608 nonsynonymous SNV ENSMUST00000174667:c.G91A:p.D31N 18qE2 NA NA chr18 70655768 CAGxACA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 143 0 0 46.81695 0.566667 0.02 -0.262666 13 17 356 476 60 60 0 0 GG 27.971627 93 0 2615 0 KEEP + Stard6 YES MNNG_2 chr18 80894485 80894485 G A exonic Nfatc1 synonymous SNV NM_001164109:c.C1038T:p.P346P exonic Nfatc1 synonymous SNV uc008fte.2:c.C1038T:p.P346P exonic ENSMUSG00000033016 synonymous SNV ENSMUST00000035800:c.C996T:p.P332P 18qE3 NA NA chr18 80894485 AGAxGGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 210 1 0 218.591225 0.6 0.02 2.438286 52 78 1498 2194 60 60 0 0 GG 18.285233 61 0 1691 0 KEEP - Nfatc1 YES MNNG_2 chr18 81168132 81168132 G A exonic Sall3 nonsynonymous SNV NM_178280:c.C3103T:p.P1035S exonic Sall3 nonsynonymous SNV uc008ftl.2:c.C2923T:p.P975S exonic ENSMUSG00000024565 nonsynonymous SNV ENSMUST00000057950:c.C3103T:p.P1035S 18qE3 NA NA chr18 81168132 TAGxGAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999108 0.99911 0.999999 129 4 0 125.475144 0.576923 0.02 1.100751 33 45 960 1271 60 60 0 0 GG 10.523791 35 0 974 0 KEEP - Sall3 YES MNNG_2 chr18 82788217 82788217 G A exonic Zfp236 synonymous SNV NM_177832:c.C4191T:p.S1397S exonic Zfp236 synonymous SNV uc008fub.2:c.C4191T:p.S1397S exonic ENSMUSG00000041258 synonymous SNV ENSMUST00000171071:c.C4191T:p.S1397S 18qE3 NA NA chr18 82788217 TAAxGAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 133 0 0 106.168124 0.549296 0.02 1.135886 32 39 923 1088 60 60 0 0 GG 11.431586 38 0 1091 0 KEEP - Zfp236 YES MNNG_2 chr18 82838002 82838002 C T exonic Zfp236 nonsynonymous SNV NM_177832:c.G802A:p.G268R exonic Zfp236 nonsynonymous SNV uc008fub.2:c.G802A:p.G268R exonic ENSMUSG00000041258 nonsynonymous SNV ENSMUST00000171071:c.G802A:p.G268R 18qE3 NA NA chr18 82838002 TCCxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 97 0 0 59.524496 0.55 0.02 -0.359438 18 22 519 610 70 60 0 0 CC 11.731228 39 0 1095 0 KEEP - Zfp236 YES MNNG_2 chr19 10292019 10292019 C T exonic Myrf nonsynonymous SNV NM_001033481:c.G1904A:p.G635D exonic Gm98 nonsynonymous SNV uc008gpk.2:c.G398A:p.G133D exonic ENSMUSG00000036098 nonsynonymous SNV ENSMUST00000165317:c.G1298A:p.G433D 19qA NA NA chr19 10292019 ACAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 180 1 0 53.927769 0.407407 0.02 1.221886 32 22 924 593 60 60 0 0 CC 27.653125 92 0 2533 0 KEEP - Myrf YES MNNG_2 chr19 10298850 10298850 C T intronic Myrf NA NA intronic Gm98 NA NA intronic ENSMUSG00000036098 NA NA 19qA NA NA chr19 10298850 CTAxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 245 6 0 129.26113 0.459459 0.02 2.399694 60 51 1693 1382 60 60 0 0 CC 28.511556 95 0 2605 0 KEEP - Myrf YES MNNG_2 chr19 11377534 11377534 C T intergenic "4930526L06Rik(dist=3160),Ms4a7(dist=17995)" NA NA intergenic "Ms4a5(dist=19231),Ms4a7(dist=18364)" NA NA exonic ENSMUSG00000024671 nonsynonymous SNV ENSMUST00000067600:c.G2014A:p.E672K 19qA NA NA chr19 11377534 TCTxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 205 0 0 63.335561 0.416667 0.02 1.169395 35 25 985 691 60 60 0 0 CC 39.684744 135 1 3876 8 KEEP NA 4930526L06Rik YES MNNG_2 chr19 13546298 13546298 C A exonic Olfr1474 synonymous SNV NM_001011842:c.C837A:p.V279V exonic Olfr1474 synonymous SNV uc008gvo.1:c.C837A:p.V279V exonic ENSMUSG00000071630 synonymous SNV ENSMUST00000096202:c.C837A:p.V279V 19qA "Score=0.939843;Name=No.72628,chr19:13516989" NA chr19 13546298 GGTxATT C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 87 0 0 20.05536 0.380952 0.02 -0.184157 13 8 371 223 60 60 0 0 CC 16.244877 54 0 1552 0 KEEP + Olfr1474 NO MNNG_2 chr19 17198421 17198421 C T exonic Prune2 synonymous SNV NM_181348:c.C6798T:p.F2266F exonic Prune2 synonymous SNV uc008gxg.2:c.C6798T:p.F2266F exonic ENSMUSG00000039126 synonymous SNV ENSMUST00000087689:c.C6798T:p.F2266F 19qB NA NA chr19 17198421 CTTxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 101 4 0 29.205501 0.324324 0.02 -0.324264 25 12 696 336 60 60 0 0 CC 15.040383 50 0 1415 0 KEEP + Prune2 YES MNNG_2 chr19 18861163 18861163 G A splicing Trpm6(NM_153417:exon7:c.643-1G>A) NA NA splicing "Trpm6(uc008gya.1:exon7:c.643-1G>A,uc008gyb.1:exon7:c.274-1G>A)" NA NA splicing ENSMUSG00000024727(ENSMUST00000040489:exon7:c.643-1G>A) NA NA 19qB NA NA chr19 18861163 TCAxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 118 4 0 45.015622 0.391304 0.02 -0.403329 28 18 797 498 60 60 0 0 GG 16.5456 55 0 1575 0 KEEP + Trpm6 YES MNNG_2 chr19 20459037 20459037 C T exonic Anxa1 nonsynonymous SNV NM_010730:c.G103A:p.A35T exonic Anxa1 nonsynonymous SNV uc008gyi.1:c.G103A:p.A35T exonic ENSMUSG00000024659 nonsynonymous SNV ENSMUST00000025561:c.G103A:p.A35T 19qB NA NA chr19 20459037 CTGxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 161 0 0 40.708637 0.34 0.02 1.248758 33 17 918 465 60 60 0 0 CC 25.870208 86 0 2445 0 KEEP - Anxa1 YES MNNG_2 chr19 24050036 24050036 G A exonic Fam189a2 nonsynonymous SNV NM_001114174:c.C1399T:p.P467S exonic Fam189a2 nonsynonymous SNV uc008hak.2:c.C1399T:p.P467S exonic ENSMUSG00000071604 nonsynonymous SNV ENSMUST00000096164:c.C1399T:p.P467S 19qB NA NA chr19 24050036 GGGxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 122 0 0 56.471821 0.387097 0.02 1.249908 38 24 1080 630 60 60 0 0 GG 13.226048 44 0 1192 0 KEEP - Fam189a2 YES MNNG_2 chr19 24054023 24054023 C T intronic Fam189a2 NA NA intronic Fam189a2 NA NA intronic ENSMUSG00000071604 NA NA 19qB NA NA chr19 24054023 CCCxCGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 119 3 0 55.000177 0.423077 0.02 1.320136 30 22 859 599 60 60 0 0 CC 18.33514 61 0 1678 0 KEEP - Fam189a2 YES MNNG_2 chr19 28740387 28740387 G A exonic Glis3 nonsynonymous SNV NM_175459:c.C244T:p.P82S exonic Glis3 nonsynonymous SNV uc008hci.1:c.C244T:p.P82S exonic ENSMUSG00000052942 nonsynonymous SNV ENSMUST00000159178:c.C244T:p.P82S 19qC1 NA NA chr19 28740387 CAGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 247 3 0 141.284922 0.458333 0.02 2.436484 65 55 1879 1510 60 60 0 0 GG 25.5366 85 0 2297 0 KEEP - Glis3 YES MNNG_2 chr19 29195817 29195817 G A exonic Rcl1 nonsynonymous SNV NM_021525:c.G442A:p.E148K exonic Rcl1 nonsynonymous SNV uc008hda.1:c.G442A:p.E148K exonic ENSMUSG00000024785 nonsynonymous SNV ENSMUST00000064393:c.G442A:p.E148K 19qC1 NA NA chr19 29195817 GGAxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 89 2 0 13.767115 0.352941 0.02 -0.149053 11 6 317 157 60 60 0 0 GG 15.631384 52 0 1481 0 KEEP + Rcl1 YES MNNG_2 chr19 32009166 32009166 G A exonic A1cf nonsynonymous SNV NM_001081074:c.G1190A:p.G397D exonic A1cf nonsynonymous SNV uc008hev.1:c.G914A:p.G305D exonic ENSMUSG00000052595 nonsynonymous SNV ENSMUST00000075838:c.G1190A:p.G397D 19qC1 NA NA chr19 32009166 TGGxCGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.578892 0.58293 0.993072 41 0 0 54.378542 0.730769 0.02 -0.227978 7 19 198 519 60 60 0 0 GG 3.308624 11 0 305 0 KEEP + A1cf YES MNNG_2 chr19 34197963 34197963 C T exonic Ankrd22 synonymous SNV NM_024204:c.G564A:p.K188K exonic Ankrd22 synonymous SNV uc008hgb.1:c.G564A:p.K188K exonic ENSMUSG00000024774 synonymous SNV ENSMUST00000025686:c.G564A:p.K188K 19qC1 NA NA chr19 34197963 TCTxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 88 0 0 25.181961 0.454545 0.02 -0.192894 12 10 352 270 60 60 0 0 CC 14.139283 47 0 1354 0 KEEP - Ankrd22 YES MNNG_2 chr19 34301096 34301096 C T exonic Stambpl1 nonsynonymous SNV NM_029682:c.C95T:p.A32V exonic Stambpl1 nonsynonymous SNV uc008hgc.1:c.C95T:p.A32V exonic ENSMUSG00000024776 nonsynonymous SNV ENSMUST00000054956:c.C95T:p.A32V 19qC1 NA NA chr19 34301096 GCGxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036511 0.036766 0.993072 18 0 0 7.823919 0.5 0.02 -0.052615 3 3 88 82 60 60 0 0 CC 3.308454 11 0 303 0 KEEP + Stambpl1 YES MNNG_2 chr19 34326940 34326940 G A exonic Acta2 nonsynonymous SNV NM_007392:c.C104T:p.S35F exonic Acta2 nonsynonymous SNV uc008hgg.1:c.C104T:p.S35F exonic ENSMUSG00000035783 nonsynonymous SNV ENSMUST00000039631:c.C104T:p.S35F 19qC1 NA NA chr19 34326940 ATGxATG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 61 0 0 43.523528 0.571429 0.02 -0.254292 12 16 342 442 60 60 0 0 GG 7.519789 25 0 699 0 KEEP - Acta2 YES MNNG_2 chr19 34661775 34661775 C T exonic Ifit3 nonsynonymous SNV NM_010501:c.C230T:p.A77V exonic Ifit3 nonsynonymous SNV uc008hgo.1:c.C230T:p.A77V exonic ENSMUSG00000074896 nonsynonymous SNV ENSMUST00000102825:c.C230T:p.A77V 19qC1 "Score=0.956032;Name=No.72672,chr19:34681336" NA chr19 34661775 AAGxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 459 5 11 60.889591 0.180124 0.02 3.576771 132 29 3791 800 60 60 0 0 CC 66.76792 222 0 6231 0 KEEP + Ifit3 YES MNNG_2 chr19 34747031 34747031 G A exonic Slc16a12 nonsynonymous SNV NM_172838:c.C1093T:p.P365S exonic Slc16a12 nonsynonymous SNV uc008hgu.1:c.C1093T:p.P365S exonic ENSMUSG00000009378 nonsynonymous SNV ENSMUST00000009522:c.C1093T:p.P365S 19qC1 NA NA chr19 34747031 CCGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 65 0 0 24.94063 0.37037 0.02 -0.23677 17 10 487 279 60 60 0 0 GG 9.926118 33 0 920 0 KEEP - Slc16a12 YES MNNG_2 chr19 36131189 36131189 C T intronic Htr7 NA NA intronic Htr7 NA NA intronic ENSMUSG00000024798 NA NA 19qC2 NA NA chr19 36131189 TGTxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 121 0 0 72.805888 0.482759 0.02 1.169643 30 28 856 769 60 60 0 0 CC 14.137374 47 0 1328 0 KEEP - Htr7 YES MNNG_2 chr19 38117750 38117750 G A exonic Myof nonsynonymous SNV NM_001099634:c.C64T:p.P22S exonic Myof nonsynonymous SNV uc008hit.1:c.C64T:p.P22S exonic ENSMUSG00000048612 nonsynonymous SNV ENSMUST00000040369:c.C64T:p.P22S 19qC2 NA NA chr19 38117750 TAGxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.999859 38 0 0 15.948421 0.5 0.02 -0.105237 6 6 177 167 60 60 0 0 GG 5.366453 18 0 468 0 KEEP - Myof YES MNNG_2 chr19 38198987 38198987 G A intronic Rbp4 NA NA intronic Rbp4 NA NA intronic ENSMUSG00000024990 NA NA 19qC3 NA NA chr19 38198987 TCGxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 144 2 0 84.350754 0.5 0.02 1.215095 33 33 939 885 60 60 0 0 GG 18.347511 61 0 1696 0 KEEP - Rbp4 YES MNNG_2 chr19 40165596 40165596 G A exonic;splicing "Cyp2c50;Cyp2c50(NM_134144:exon4:c.642+1G>A,NM_001167875:exon4:c.642+1G>A)" nonsynonymous SNV NM_001167877:c.G643A:p.V215M exonic;splicing "Cyp2c50;Cyp2c50(uc008hki.2:exon4:c.642+1G>A,uc012blo.1:exon4:c.642+1G>A)" nonsynonymous SNV uc008hkh.2:c.G643A:p.V215M splicing "ENSMUSG00000054827(ENSMUST00000068094:exon4:c.642+1G>A,ENSMUST00000080171:exon4:c.642+1G>A)" NA NA 19qC3 "Score=0.927134;Name=No.72693,chr19:40138801" NA chr19 40165596 CAGxTGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 162 0 0 46.049954 0.486486 0.02 -0.324434 19 18 531 486 60 60 0 0 GG 30.050194 100 0 2701 0 KEEP + Cyp2c50 YES MNNG_2 chr19 41191683 41191683 G A intronic Tll2 NA NA intronic Tll2 NA NA intronic ENSMUSG00000025013 NA NA 19qC3 NA NA chr19 41191683 GCAxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 45 0 0 41.791556 1 0.02 -0.113986 0 13 0 356 0 60 0 0 GG 8.421586 28 0 786 0 KEEP - Tll2 YES MNNG_2 chr19 41370949 41370949 G A exonic Pik3ap1 nonsynonymous SNV NM_031376:c.C1786T:p.P596S exonic Pik3ap1 nonsynonymous SNV uc008hlu.1:c.C1786T:p.P596S exonic ENSMUSG00000025017 nonsynonymous SNV ENSMUST00000059672:c.C1786T:p.P596S 19qC3 NA NA chr19 41370949 ATGxGTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.639957 0.641347 0.997832 52 2 0 19.391685 0.296296 0.02 -0.245555 19 8 552 227 60 60 0 0 GG 4.812472 16 0 447 0 KEEP - Pik3ap1 YES MNNG_2 chr19 4171478 4171478 C T exonic Carns1 synonymous SNV NM_134148:c.G777A:p.Q259Q exonic Carns1 synonymous SNV uc012bgf.1:c.G777A:p.Q259Q exonic ENSMUSG00000075289 synonymous SNV ENSMUST00000100021:c.G777A:p.Q259Q 19qA NA NA chr19 4171478 TTCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888767 0.888875 0.999879 70 0 0 47.57527 0.439024 0.02 -0.359568 23 18 671 512 60 60 0 0 CC 6.617912 22 0 623 0 KEEP - Carns1 YES MNNG_2 chr19 42005865 42005865 C T exonic Exosc1 nonsynonymous SNV NM_001164561:c.G203A:p.G68E exonic Exosc1 nonsynonymous SNV uc008hmm.2:c.G203A:p.G68E exonic ENSMUSG00000034321 nonsynonymous SNV ENSMUST00000075280:c.G203A:p.G68E 19qC3 NA NA chr19 42005865 GCTxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 105 0 0 19.653046 0.363636 0.02 -0.289395 14 8 409 221 60 60 0 0 CC 19.851792 66 0 1851 0 KEEP - Exosc1 YES MNNG_2 chr19 43516095 43516095 G A exonic Cnnm1 synonymous SNV NM_031396:c.G1161A:p.E387E exonic Cnnm1 synonymous SNV uc008hoh.2:c.G1161A:p.E387E exonic ENSMUSG00000025189 synonymous SNV ENSMUST00000026195:c.G66A:p.E22E 19qC3 NA NA chr19 43516095 GGAxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 192 0 0 142.488805 0.524272 0.02 2.478515 49 54 1415 1477 60 60 0 0 GG 19.54036 65 0 1829 0 KEEP + Cnnm1 YES MNNG_2 chr19 44599627 44599627 C T exonic Sec31b synonymous SNV NM_001033343:c.G1929A:p.K643K exonic Sec31b synonymous SNV uc012bmg.1:c.G1458A:p.K486K exonic ENSMUSG00000051984 synonymous SNV ENSMUST00000111985:c.G1458A:p.K486K 19qC3 NA NA chr19 44599627 GAAxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260929 0.260965 0.999863 42 0 0 14.910001 0.428571 0.02 -0.140271 8 6 216 162 60 60 0 0 CC 6.015056 20 0 553 0 KEEP - Sec31b YES MNNG_2 chr19 45870115 45870115 C T exonic Kcnip2 synonymous SNV NM_001276358:c.G168A:p.K56K exonic Kcnip2 synonymous SNV uc008hrr.1:c.G168A:p.K56K exonic ENSMUSG00000025221 nonsynonymous SNV ENSMUST00000159245:c.G80A:p.S27N 19qC3 NA NA chr19 45870115 GAAxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 105 0 0 75.765817 0.526316 0.02 1.097663 27 30 758 786 60 60 0 0 CC 9.317674 31 0 862 0 KEEP - Kcnip2 YES MNNG_2 chr19 46136000 46136000 C T exonic Pprc1 synonymous SNV NM_001081214:c.C261T:p.T87T exonic Pprc1 synonymous SNV uc008hsb.1:c.C261T:p.T87T exonic ENSMUSG00000055491 synonymous SNV ENSMUST00000062322:c.C261T:p.T87T 19qC3 NA NA chr19 46136000 GACxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 72 0 0 16.601753 0.304348 0.02 -0.201704 16 7 465 194 60 60 0 0 CC 11.129373 37 0 1034 0 KEEP + Pprc1 YES MNNG_2 chr19 47584942 47584942 C T exonic Obfc1 synonymous SNV NM_175360:c.G789A:p.E263E exonic Obfc1 synonymous SNV uc008hvb.1:c.G789A:p.E263E exonic ENSMUSG00000042694 synonymous SNV ENSMUST00000049369:c.G789A:p.E263E 19qD1 NA NA chr19 47584942 TAAxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.999859 38 0 0 26.566559 0.625 0.02 -0.140284 6 10 178 264 60 60 0 0 CC 5.414542 18 0 509 0 KEEP - Obfc1 YES MNNG_2 chr19 48846862 48846862 G A exonic Sorcs3 stopgain SNV NM_025696:c.G2838A:p.W946X exonic Sorcs3 stopgain SNV uc008hvx.1:c.G2838A:p.W946X exonic ENSMUSG00000063434 stopgain SNV ENSMUST00000078880:c.G2838A:p.W946X 19qD1 NA NA chr19 48846862 CTGxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 67 0 0 20.793311 0.45 0.02 -0.175121 11 9 312 225 60 60 0 0 GG 11.127796 37 0 1011 0 KEEP + Sorcs3 YES MNNG_2 chr19 4917848 4917848 C T intronic Dpp3 NA NA intronic Dpp3 NA NA intronic ENSMUSG00000063904 NA NA 19qA NA NA chr19 4917848 CAAxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 90 0 0 62.679534 0.71875 0.02 -0.280383 9 23 254 600 60 60 0 0 CC 12.619795 42 0 1133 0 KEEP - Dpp3 YES MNNG_2 chr19 5427081 5427081 C T UTR3 AI837181 NA NA UTR3 "AI837181,Bles03" NA NA UTR3 ENSMUSG00000047423 NA NA 19qA NA NA chr19 5427081 CTGxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 146 3 0 90.596433 0.466667 0.02 1.020269 40 35 1126 964 60 60 0 0 CC 16.788908 56 0 1506 0 KEEP + AI837181 YES MNNG_2 chr19 5483470 5483470 T C exonic Mus81 nonsynonymous SNV NM_027877:c.A1490G:p.Y497C exonic Mus81 nonsynonymous SNV uc008gdn.2:c.A1490G:p.Y497C exonic ENSMUSG00000024906 nonsynonymous SNV ENSMUST00000025841:c.A1490G:p.Y497C 19qA NA NA chr19 5483470 CTGxATC T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.914948 0.918171 0.99649 68 0 0 7.423225 0.097561 0.02 -0.385713 37 4 976 112 60 60 0 0 TT 4.510415 15 0 400 0 KEEP - Mus81 NO MNNG_2 chr19 56508354 56508354 C T exonic Casp7 synonymous SNV NM_007611:c.C310T:p.L104L exonic Casp7 synonymous SNV uc008hyw.1:c.C310T:p.L104L exonic ENSMUSG00000025076 synonymous SNV ENSMUST00000026062:c.C310T:p.L104L 19qD2 NA NA chr19 56508354 AACxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 137 0 0 69.135507 0.435484 0.02 1.249826 35 27 1027 747 60 60 0 0 CC 18.905074 63 0 1773 0 KEEP + Casp7 YES MNNG_2 chr19 5685341 5685341 A T exonic Pcnxl3 nonsynonymous SNV NM_144868:c.T1456A:p.Y486N exonic Pcnxl3 nonsynonymous SNV uc008ges.2:c.T1000A:p.Y334N exonic ENSMUSG00000054874 nonsynonymous SNV ENSMUST00000113615:c.T1456A:p.Y486N 19qA NA NA chr19 5685341 CATxGGG A T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 178 2 0 55.134682 0.285714 0.02 0.950274 60 24 1599 655 60 60 0 0 AA 19.180492 64 0 1670 0 KEEP - Pcnxl3 NO MNNG_2 chr19 5725957 5725957 C T exonic Ehbp1l1 nonsynonymous SNV NM_001114595:c.G64A:p.A22T exonic Ehbp1l1 nonsynonymous SNV uc008gev.2:c.G64A:p.A22T exonic ENSMUSG00000024937 nonsynonymous SNV ENSMUST00000049295:c.G64A:p.A22T 19qA NA NA chr19 5725957 ACGxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 215 4 0 101.818174 0.506494 0.02 1.011261 38 39 1092 1064 60 60 0 0 CC 30.331814 101 0 2766 0 KEEP - Ehbp1l1 YES MNNG_2 chr19 5752055 5752055 C T exonic Ltbp3 nonsynonymous SNV NM_008520:c.C2258T:p.P753L exonic Ltbp3 nonsynonymous SNV uc008gfg.1:c.C1241T:p.P414L exonic ENSMUSG00000024940 nonsynonymous SNV ENSMUST00000076366:c.C2258T:p.P753L 19qA NA NA chr19 5752055 CTCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 102 0 0 40.479595 0.454545 0.02 -0.28941 18 15 525 432 60 60 0 0 CC 15.322339 51 0 1448 0 KEEP + Ltbp3 YES MNNG_2 chr19 58860503 58860503 C T exonic 1700019N19Rik nonsynonymous SNV NM_026208:c.G697A:p.A233T exonic 1700019N19Rik nonsynonymous SNV uc008iav.1:c.G697A:p.A233T exonic ENSMUSG00000026931 nonsynonymous SNV ENSMUST00000028299:c.G697A:p.A233T 19qD2 NA NA chr19 58860503 AAGxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.99986 53 0 0 36.780308 0.538462 0.02 -0.236758 12 14 345 379 60 60 0 0 CC 5.714855 19 0 527 0 KEEP - 1700019N19Rik YES MNNG_2 chr19 59309490 59309490 C T exonic Kcnk18 synonymous SNV NM_207261:c.C576T:p.S192S exonic Kcnk18 synonymous SNV uc008ibh.1:c.C576T:p.S192S exonic ENSMUSG00000040901 synonymous SNV ENSMUST00000065204:c.C576T:p.S192S 19qD3 NA NA chr19 59309490 CTCxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 283 2 0 147.596768 0.466667 0.02 2.517277 64 56 1826 1569 60 60 0 0 CC 36.982862 123 0 3392 0 KEEP + Kcnk18 YES MNNG_2 chr19 6247677 6247677 C T exonic Atg2a nonsynonymous SNV NM_194348:c.C1264T:p.P422S exonic Atg2a nonsynonymous SNV uc008ghv.1:c.C481T:p.P161S exonic ENSMUSG00000024773 nonsynonymous SNV ENSMUST00000045351:c.C1264T:p.P422S 19qA NA NA chr19 6247677 CGCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 166 1 0 135.925966 0.531915 0.02 0.969229 44 50 1264 1403 60 60 0 0 CC 17.434089 58 0 1604 0 KEEP + Atg2a YES MNNG_2 chr19 6344041 6344041 C T exonic Map4k2 nonsynonymous SNV NM_009006:c.C877T:p.H293Y exonic Map4k2 nonsynonymous SNV uc008gij.1:c.C610T:p.H204Y exonic ENSMUSG00000024948 nonsynonymous SNV ENSMUST00000130382:c.C745T:p.H249Y 19qA NA NA chr19 6344041 CCCxACC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 244 5 0 170.274846 0.52459 0.02 2.509002 58 64 1635 1764 60 60 0 0 CC 21.65733 72 0 2023 0 KEEP + Map4k2 YES MNNG_2 chr19 6932195 6932195 C T exonic Ccdc88b synonymous SNV NM_001081291:c.G147A:p.G49G exonic Ccdc88b synonymous SNV uc008gjb.1:c.G147A:p.G49G exonic ENSMUSG00000047810 synonymous SNV ENSMUST00000080351:c.G147A:p.G49G 19qA NA NA chr19 6932195 AGCxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 135 0 0 111.495181 0.531646 0.02 1.083969 37 42 1045 1152 60 60 0 0 CC 10.815231 36 0 970 0 KEEP - Ccdc88b YES MNNG_2 chr19 6997144 6997144 C T exonic Tex40 nonsynonymous SNV NM_001039494:c.G482A:p.R161K exonic 1700019N12Rik nonsynonymous SNV uc012bhp.1:c.G377A:p.R126K exonic ENSMUSG00000050623 nonsynonymous SNV ENSMUST00000057716:c.G482A:p.R161K 19qA NA NA chr19 6997144 GACxTAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 242 0 0 78.771085 0.407895 0.02 1.127075 45 31 1302 863 60 60 0 0 CC 40.889318 136 0 3856 0 KEEP - Tex40 YES MNNG_2 chr19 8922485 8922485 C T intronic Bscl2 NA NA intronic Bscl2 NA NA intronic ENSMUSG00000071657 NA NA 19qA NA NA chr19 8922485 GTTxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 92 0 0 80.275372 0.591837 0.02 -0.437892 20 29 552 808 60 60 0 0 CC 9.325097 31 0 878 0 KEEP + Bscl2 YES MNNG_2 chr19 9040412 9040412 C T exonic Tut1 nonsynonymous SNV NM_197993:c.C2372T:p.P791L exonic Tut1 nonsynonymous SNV uc008goh.1:c.C2372T:p.P791L exonic ENSMUSG00000071645 nonsynonymous SNV ENSMUST00000096239:c.C2372T:p.P791L 19qA NA NA chr19 9040412 GTCxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 107 0 0 55.144489 0.456522 0.02 -0.420882 25 21 709 589 60 60 0 0 CC 13.810037 46 0 1246 0 KEEP + Tut1 YES MNNG_2 chr19 9734322 9734322 A C intergenic "Stxbp3b(dist=100584),Incenp(dist=212465)" NA NA intergenic "AK048878(dist=380657),AB351165(dist=1832)" NA NA intergenic "ENSMUSG00000071640(dist=100584),ENSMUSG00000076370(dist=195487)" NA NA 19qA "Score=0.985887;Name=No.72598,chr19:9324705" NA chr19 9734322 TCAxGTT A C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 171 0 36 42.125573 0.527778 0.02 -0.31547 17 19 479 439 60 60 0 0 AA 30.98085 103 0 2881 0 KEEP NA Stxbp3b NO MNNG_2 chr1 101837201 101837201 C T intronic Cntnap5b NA NA intronic Cntnap5b NA NA intronic ENSMUSG00000067028 NA NA 1qE1.1 NA NA chr1 101837201 CTGxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 73 0 0 15.768639 0.545455 0.02 -0.096456 5 6 142 162 60 60 0 0 CC 15.918852 53 0 1412 0 KEEP + Cntnap5b YES MNNG_2 chr1 102151731 102151731 C T exonic Cntnap5b nonsynonymous SNV NM_172851:c.C1849T:p.L617F exonic Cntnap5b nonsynonymous SNV uc007cfz.1:c.C313T:p.L105F exonic ENSMUSG00000067028 nonsynonymous SNV ENSMUST00000086738:c.C1849T:p.L617F 1qE1.1 NA NA chr1 102151731 CCAxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054131 0.054137 0.999892 38 0 0 10.699009 0.5 0.02 -0.07016 4 4 119 112 60 60 0 0 CC 6.903776 23 0 612 0 KEEP + Cntnap5b YES MNNG_2 chr1 107443210 107443210 G A intronic Pign NA NA intronic Pign NA NA intronic ENSMUSG00000056536 NA NA 1qE2.1 NA NA chr1 107443210 TAGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139813 0.139832 0.999863 39 0 0 12.759464 0.416667 0.02 -0.104814 7 5 183 139 60 60 0 0 GG 6.015904 20 0 562 0 KEEP - Pign YES MNNG_2 chr1 107926425 107926425 C T exonic Zcchc2 nonsynonymous SNV NM_001122675:c.C2048T:p.A683V exonic Zcchc2 nonsynonymous SNV uc007cgr.2:c.C857T:p.A286V exonic ENSMUSG00000038866 nonsynonymous SNV ENSMUST00000118196:c.C2048T:p.A683V 1qE2.1 NA NA chr1 107926425 CTGxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 131 0 0 42.428062 0.414634 0.02 -0.359463 24 17 677 464 60 60 0 0 CC 21.336501 71 0 1943 0 KEEP + Zcchc2 YES MNNG_2 chr1 108847279 108847279 G A exonic Serpinb12 nonsynonymous SNV NM_001199213:c.G439A:p.E147K exonic Serpinb12 nonsynonymous SNV uc007chc.2:c.G439A:p.E147K exonic ENSMUSG00000059956 nonsynonymous SNV ENSMUST00000081277:c.G439A:p.E147K 1qE2.1 NA NA chr1 108847279 CAGxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 137 4 0 26.08574 0.454545 0.02 -0.192932 12 10 347 279 60 60 0 0 GG 27.010312 90 0 2520 0 KEEP + Serpinb12 YES MNNG_2 chr1 11051408 11051408 C T exonic Prex2 nonsynonymous SNV NM_029525:c.C119T:p.A40V exonic Prex2 nonsynonymous SNV uc007ahs.2:c.C119T:p.A40V exonic ENSMUSG00000048960 nonsynonymous SNV ENSMUST00000027056:c.C119T:p.A40V 1qA2 NA NA chr1 11051408 AGGxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 66 0 0 34.016967 0.75 0.02 -0.149013 4 12 104 322 60 60 0 0 CC 11.727698 39 0 1069 0 KEEP + Prex2 YES MNNG_2 chr1 120734613 120734613 C T exonic Gli2 nonsynonymous SNV NM_001081125:c.G2384A:p.S795N exonic Gli2 nonsynonymous SNV uc007cim.1:c.G2384A:p.S795N exonic ENSMUSG00000048402 nonsynonymous SNV ENSMUST00000062483:c.G2384A:p.S795N 1qE2.3 NA NA chr1 120734613 GAGxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 94 0 0 81.356829 0.553571 0.02 1.195417 25 31 727 833 60 60 0 0 CC 9.024171 30 0 847 0 KEEP - Gli2 YES MNNG_2 chr1 121314276 121314276 C T exonic Inhbb nonsynonymous SNV NM_008381:c.G859A:p.G287S exonic Inhbb nonsynonymous SNV uc007cir.1:c.G859A:p.G287S exonic ENSMUSG00000037035 nonsynonymous SNV ENSMUST00000038765:c.G859A:p.G287S 1qE2.3 NA NA chr1 121314276 CGCxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963772 0.963774 0.999998 91 2 0 62.853071 0.490196 0.02 1.346497 26 25 753 663 60 60 0 0 CC 10.221383 34 0 920 0 KEEP - Inhbb YES MNNG_2 chr1 121847700 121847700 C T exonic Gm101 nonsynonymous SNV NM_001115074:c.G1145A:p.G382E exonic Gm101 nonsynonymous SNV uc011wqu.1:c.G1145A:p.G382E exonic ENSMUSG00000036962 nonsynonymous SNV ENSMUST00000037840:c.G1145A:p.G382E 1qE2.3 NA NA chr1 121847700 TTTxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 82 1 0 30.14899 0.647059 0.02 -0.149066 6 11 173 297 60 60 0 0 CC 16.718528 56 0 1517 0 KEEP - Gm101 YES MNNG_2 chr1 127302394 127302394 G A intronic Actr3 NA NA intronic Actr3 NA NA intronic ENSMUSG00000026341 NA NA 1qE3 NA NA chr1 127302394 CCAxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196288 0.196312 0.999879 43 0 0 21.661344 0.571429 0.02 -0.122773 6 8 178 220 60 60 0 0 GG 6.617875 22 0 624 0 KEEP - Actr3 YES MNNG_2 chr1 134421962 134421962 C T exonic Cntn2 nonsynonymous SNV NM_177129:c.G1168A:p.E390K exonic Cntn2 nonsynonymous SNV uc007cpb.1:c.G709A:p.E237K exonic ENSMUSG00000053024 nonsynonymous SNV ENSMUST00000086521:c.G1168A:p.E390K 1qE4 NA NA chr1 134421962 CCTxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 46 0 0 45.291517 0.666667 0.02 -0.210458 8 16 234 443 60 60 0 0 CC 5.715135 19 0 535 0 KEEP - Cntn2 YES MNNG_2 chr1 136187737 136187737 G A exonic Myog nonsynonymous SNV NM_031189:c.G539A:p.G180D exonic Myog nonsynonymous SNV uc007crl.2:c.G539A:p.G180D exonic ENSMUSG00000026459 nonsynonymous SNV ENSMUST00000027730:c.G539A:p.G180D 1qE4 NA NA chr1 136187737 TCGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 76 0 0 46.752765 0.514286 0.02 -0.30688 17 18 468 487 60 60 0 0 GG 8.721157 29 0 781 0 KEEP + Myog YES MNNG_2 chr1 136517394 136517394 G A intronic Kdm5b NA NA intronic Kdm5b NA NA intronic ENSMUSG00000042207 NA NA 1qE4 NA NA chr1 136517394 GTAxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 31 0 0 29.029078 0.714286 0.02 -0.122774 4 10 119 279 60 60 0 0 GG 4.813379 16 0 461 0 KEEP + Kdm5b YES MNNG_2 chr1 137786578 137786578 G A exonic Pkp1 nonsynonymous SNV NM_019645:c.C395T:p.P132L exonic Pkp1 nonsynonymous SNV uc007cub.1:c.C395T:p.P132L exonic ENSMUSG00000026413 nonsynonymous SNV ENSMUST00000027667:c.C395T:p.P132L 1qE4 NA NA chr1 137786578 CGGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 176 0 0 95.110228 0.474359 0.02 1.111132 41 37 1161 1010 60 60 0 0 GG 23.45187 78 0 2153 0 KEEP - Pkp1 YES MNNG_2 chr1 138386880 138386880 G A exonic Kif14 nonsynonymous SNV NM_001081258:c.G2423A:p.G808E exonic Kif14 nonsynonymous SNV uc007cuv.1:c.G2573A:p.G858E exonic ENSMUSG00000041498 nonsynonymous SNV ENSMUST00000047817:c.G2423A:p.G808E 1qE4 NA NA chr1 138386880 AAGxAGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 153 0 0 52.334705 0.5 0.02 -0.366459 20 20 554 548 60 60 0 0 GG 26.758968 89 0 2475 0 KEEP + Kif14 YES MNNG_2 chr1 138523650 138523650 G A exonic Zfp281 synonymous SNV NM_001160251:c.G1788A:p.K596K exonic Zfp281 synonymous SNV uc007cuw.2:c.G1788A:p.K596K exonic ENSMUSG00000041483 synonymous SNV ENSMUST00000047734:c.G1788A:p.K596K 1qE4 NA NA chr1 138523650 CAAxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 68 0 0 21.977797 0.428571 0.02 -0.183721 12 9 327 239 60 60 0 0 GG 11.130289 37 0 1054 0 KEEP + Zfp281 YES MNNG_2 chr1 140738355 140738355 C T intronic Lhx9 NA NA intronic Lhx9 NA NA intronic ENSMUSG00000019230 NA NA 1qF NA NA chr1 140738355 TTTxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.779366 0.78106 0.997832 51 0 0 34.602906 0.424242 0.02 -0.298076 19 14 535 377 60 60 0 0 CC 4.81216 16 0 447 0 KEEP - Lhx9 YES MNNG_2 chr1 152228602 152228602 A G intronic BC003331 NA NA intronic BC003331 NA NA intronic ENSMUSG00000006010 NA NA 1qG1 NA NA chr1 152228602 AATxAGA A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 87 0 0 22.099884 0.5 0.02 -0.140302 8 8 215 231 60 60 0 0 AA 17.440081 58 0 1541 0 KEEP - BC003331 NO MNNG_2 chr1 152474588 152474588 G A exonic Hmcn1 synonymous SNV NM_001024720:c.C11595T:p.P3865P exonic Hmcn1 synonymous SNV uc007cyj.1:c.C11595T:p.P3865P exonic ENSMUSG00000066842 synonymous SNV ENSMUST00000074783:c.C11595T:p.P3865P 1qG1 NA NA chr1 152474588 AGAxGGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 0.999999 75 0 0 50.526525 0.580645 0.02 -0.271864 13 18 381 511 60 60 0 0 GG 10.827071 36 0 1002 0 KEEP + Hmcn1 YES MNNG_2 chr1 152530786 152530786 G A exonic Hmcn1 nonsynonymous SNV NM_001024720:c.C7243T:p.P2415S exonic Hmcn1 nonsynonymous SNV uc007cyj.1:c.C7243T:p.P2415S exonic ENSMUSG00000066842 nonsynonymous SNV ENSMUST00000074783:c.C7243T:p.P2415S 1qG1 NA NA chr1 152530786 AAGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 63 0 0 24.228994 0.5625 0.02 -0.149067 7 9 195 247 60 60 0 0 GG 11.71834 39 0 1048 0 KEEP + Hmcn1 YES MNNG_2 chr1 160225756 160225756 C T exonic Brinp2 nonsynonymous SNV NM_207583:c.G70A:p.A24T exonic Fam5b nonsynonymous SNV uc007ddq.2:c.G70A:p.A24T exonic ENSMUSG00000004031 nonsynonymous SNV ENSMUST00000004133:c.G70A:p.A24T 1qH1 NA NA chr1 160225756 GCGxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 210 0 0 128.567452 0.480769 0.02 2.274019 54 50 1514 1360 60 60 0 0 CC 24.359584 81 0 2217 0 KEEP - Brinp2 YES MNNG_2 chr1 162904751 162904751 G A UTR3 Rc3h1 NA NA UTR3 Rc3h1 NA NA UTR3 ENSMUSG00000040423 NA NA 1qH2.1 NA NA chr1 162904751 TAGxAGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 72 0 0 18.537267 0.466667 0.02 -0.140311 8 7 230 197 60 60 0 0 GG 13.837324 46 0 1306 0 KEEP + Rc3h1 YES MNNG_2 chr1 168029028 168029028 C T exonic Dusp27 nonsynonymous SNV NM_001033344:c.G3145A:p.E1049K exonic Dusp27 nonsynonymous SNV uc007dkh.2:c.G3145A:p.E1049K exonic ENSMUSG00000026564 nonsynonymous SNV ENSMUST00000085992:c.G3145A:p.E1049K 1qH2.3 NA NA chr1 168029028 CTTxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 115 0 0 68.003643 0.464286 0.02 1.195382 30 26 849 724 60 60 0 0 CC 16.243064 54 0 1517 0 KEEP - Dusp27 YES MNNG_2 chr1 168184467 168184467 C T UTR5 Ildr2 NA NA UTR5 Ildr2 NA NA UTR5 ENSMUSG00000040612 NA NA 1qH2.3 NA NA chr1 168184467 CGCxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 22 0 0 10.422591 0.444444 0.02 -0.096459 5 4 142 112 60 60 0 0 CC 3.60917 12 0 329 0 KEEP + Ildr2 YES MNNG_2 chr1 172640046 172640046 G A exonic Atf6 synonymous SNV NM_001081304:c.C1935T:p.T645T exonic Atf6 synonymous SNV uc007dmj.1:c.C1935T:p.T645T exonic ENSMUSG00000026663 synonymous SNV ENSMUST00000027974:c.C2001T:p.T667T 1qH3 NA NA chr1 172640046 ATGxGTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 119 0 0 61.523867 0.489362 0.02 -0.412179 24 23 701 647 60 60 0 0 GG 15.625797 52 0 1419 0 KEEP - Atf6 YES MNNG_2 chr1 173537286 173537286 G A intronic Ly9 NA NA intronic Ly9 NA NA intronic ENSMUSG00000004707 NA NA 1qH3 NA NA chr1 173537286 CGGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076772 0.077336 0.992708 19 0 0 10.422511 0.444444 0.02 -0.078926 5 4 144 112 60 60 0 0 GG 2.981749 10 0 260 0 KEEP - Ly9 YES MNNG_2 chr1 175459573 175459573 C T exonic BC094916 nonsynonymous SNV NM_001024721:c.G94A:p.E32K exonic BC094916 nonsynonymous SNV uc007dro.2:c.G94A:p.E32K exonic ENSMUSG00000070501 nonsynonymous SNV ENSMUST00000090406:c.G94A:p.E32K 1qH3 "Score=0.944642;Name=No.500,chr1:175539790" NA chr1 175459573 ATTxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 225 1 0 41.349664 0.457143 0.02 -0.306924 19 16 545 442 60 60 0 0 CC 51.436841 171 0 4913 0 KEEP - BC094916 YES MNNG_2 chr1 176067232 176067232 C T exonic Olfr424 nonsynonymous SNV NM_146721:c.C356T:p.A119V exonic Olfr424 nonsynonymous SNV uc007dst.1:c.C356T:p.A119V exonic ENSMUSG00000051528 nonsynonymous SNV ENSMUST00000053941:c.C356T:p.A119V 1qH3 NA NA chr1 176067232 TGGxTAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 187 0 0 64.984348 0.480769 0.02 1.230475 27 25 761 687 60 60 0 0 CC 31.856078 106 0 2922 0 KEEP + Olfr424 YES MNNG_2 chr1 17611679 17611679 C T intronic Pi15 NA NA intronic Pi15 NA NA intronic ENSMUSG00000067780 NA NA 1qA3 NA NA chr1 17611679 TGAxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 67 0 0 11.813889 0.294118 0.02 -0.149053 12 5 335 139 60 60 0 0 CC 13.53602 45 0 1282 0 KEEP + Pi15 YES MNNG_2 chr1 176766990 176766990 G A exonic Grem2 synonymous SNV NM_011825:c.C423T:p.D141D exonic Grem2 synonymous SNV uc007dtf.1:c.C423T:p.D141D exonic ENSMUSG00000050069 synonymous SNV ENSMUST00000055294:c.C423T:p.D141D 1qH3 NA NA chr1 176766990 TGGxTCG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.521029 0.522161 0.997832 43 0 0 37.193691 0.583333 0.02 -0.210438 10 14 283 376 60 60 0 0 GG 4.749976 16 0 414 0 KEEP - Grem2 YES MNNG_2 chr1 177616816 177616816 C T exonic Chml nonsynonymous SNV NM_021350:c.G1669A:p.D557N exonic Chml nonsynonymous SNV uc007dtr.2:c.G1669A:p.D557N exonic ENSMUSG00000078185 nonsynonymous SNV ENSMUST00000104984:c.G1669A:p.D557N 1qH4 NA NA chr1 177616816 AATxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 88 0 0 24.0999 0.5 0.02 -0.174831 9 9 234 252 60 60 0 0 CC 18.650656 62 0 1768 0 KEEP - Chml YES MNNG_2 chr1 181711059 181711059 T C exonic Ahctf1 nonsynonymous SNV NM_026375:c.A1978G:p.T660A exonic Ahctf1 nonsynonymous SNV uc011wxn.1:c.A1978G:p.T660A exonic ENSMUSG00000026491 nonsynonymous SNV ENSMUST00000027768:c.A1978G:p.T660A 1qH4 NA NA chr1 181711059 GGGxGAC T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 64 0 0 32.476186 0.52 0.02 -0.219154 12 13 328 338 60 60 0 0 TT 9.019926 30 0 803 0 KEEP - Ahctf1 NO MNNG_2 chr1 182796307 182796307 G A exonic Sde2 synonymous SNV NM_145943:c.G1230A:p.L410L exonic BC031781 synonymous SNV uc007dwt.1:c.G1230A:p.L410L exonic ENSMUSG00000038806 synonymous SNV ENSMUST00000038091:c.G1230A:p.L410L 1qH4 NA NA chr1 182796307 ACTxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 255 1 0 136.445727 0.525253 0.02 0.827161 47 52 1337 1414 60 60 0 0 GG 38.192809 127 0 3595 0 KEEP + Sde2 YES MNNG_2 chr1 192709256 192709256 G A exonic Rps6kc1 synonymous SNV NM_178775:c.C429T:p.Y143Y exonic Rps6kc1 synonymous SNV uc007ebi.2:c.C429T:p.Y143Y exonic ENSMUSG00000089872 synonymous SNV ENSMUST00000159066:c.C393T:p.Y131Y 1qH6 NA NA chr1 192709256 TGGxTAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 95 0 0 29.666145 0.444444 0.02 -0.236742 15 12 423 320 60 60 0 0 GG 14.134278 47 0 1289 0 KEEP - Rps6kc1 YES MNNG_2 chr1 193876166 193876166 G A intronic Traf5 NA NA intronic Traf5 NA NA intronic ENSMUSG00000026637 NA NA 1qH6 NA NA chr1 193876166 CCAxGCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 111 2 0 40.872973 0.5 0.02 -0.297911 16 16 465 429 60 60 0 0 GG 21.33206 71 0 1963 0 KEEP - Traf5 YES MNNG_2 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 54 0 0 59.83003 0.95 0.02 -0.184144 1 19 29 525 60 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO MNNG_2 chr1 196620585 196620585 C T exonic Plxna2 nonsynonymous SNV NM_008882:c.C3514T:p.P1172S exonic Plxna2 nonsynonymous SNV uc007een.1:c.C3514T:p.P1172S exonic ENSMUSG00000026640 nonsynonymous SNV ENSMUST00000027952:c.C3514T:p.P1172S 1qH6 NA NA chr1 196620585 CCTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 53 0 0 30.520336 0.611111 0.02 -0.157844 7 11 199 305 60 60 0 0 CC 7.520514 25 0 711 0 KEEP + Plxna2 YES MNNG_2 chr1 21451670 21451670 C T exonic Kcnq5 synonymous SNV NM_001160139:c.G1269A:p.K423K exonic Kcnq5 synonymous SNV uc011wio.1:c.G1269A:p.K423K exonic ENSMUSG00000028033 synonymous SNV ENSMUST00000115300:c.G1269A:p.K423K 1qA4 NA NA chr1 21451670 CTGxTTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322793 0.322807 0.999957 51 0 0 17.014454 0.388889 0.02 -0.157843 11 7 315 189 60 60 0 0 CC 7.821378 26 0 742 0 KEEP - Kcnq5 YES MNNG_2 chr1 24258654 24258654 C T exonic Col9a1 nonsynonymous SNV NM_007740:c.C2720T:p.T907I exonic Col9a1 nonsynonymous SNV uc007amp.2:c.C1997T:p.T666I exonic ENSMUSG00000026147 nonsynonymous SNV ENSMUST00000088349:c.C1997T:p.T666I 1qA5 NA NA chr1 24258654 GCAxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 124 2 0 57.700873 0.428571 0.02 1.1871 32 24 919 629 60 60 0 0 CC 14.122175 47 0 1257 0 KEEP + Col9a1 YES MNNG_2 chr1 26744177 26744177 A G exonic 4931408C20Rik nonsynonymous SNV NM_001033764:c.T95C:p.M32T exonic 4931408C20Rik nonsynonymous SNV uc007amz.2:c.T95C:p.M32T exonic ENSMUSG00000073722 nonsynonymous SNV ENSMUST00000097801:c.T95C:p.M32T 1qA5 NA NA chr1 26744177 CACxTAA A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 269 7 0 13.057894 0.097561 0.02 0.860883 74 8 2002 206 60 60 0 0 AA 44.209341 147 0 3981 0 KEEP - 4931408C20Rik NO MNNG_2 chr1 28836878 28836878 C T splicing Gm597(NM_001013750:exon2:c.165+1G>A) NA NA splicing Gm597(uc007anb.1:exon2:c.165+1G>A) NA NA splicing ENSMUSG00000048411(ENSMUST00000059937:exon2:c.165+1G>A) NA NA 1qA5 NA NA chr1 28836878 TCAxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 44 2 0 13.298623 0.555556 0.02 -0.078917 4 5 112 136 60 60 0 0 CC 8.722852 29 0 810 0 KEEP - Gm597 YES MNNG_2 chr1 33796083 33796083 C T intronic Rab23 NA NA intronic Rab23 NA NA intronic ENSMUSG00000004768 NA NA 1qB NA NA chr1 33796083 TTTxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522139 0.522161 0.999957 56 0 0 22.706994 0.391304 0.02 -0.21047 14 9 403 251 60 60 0 0 CC 7.821601 26 0 745 0 KEEP + Rab23 YES MNNG_2 chr1 34025563 34025563 C T exonic Dst nonsynonymous SNV NM_001276764:c.C232T:p.P78S exonic Bpag1 nonsynonymous SNV uc007aof.1:c.C232T:p.P78S exonic ENSMUSG00000026131 nonsynonymous SNV ENSMUST00000088270:c.C220T:p.P74S 1qB NA NA chr1 34025563 AGCxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668451 0.668523 0.999892 56 2 0 23.840058 0.357143 0.02 -0.254214 18 10 511 270 60 60 0 0 CC 6.918489 23 0 647 0 KEEP + Dst YES MNNG_2 chr1 34191957 34191957 G A exonic Dst nonsynonymous SNV NM_133833:c.G437A:p.G146E exonic "Bpag1,Dst" nonsynonymous SNV uc007aok.1:c.G785A:p.G262E exonic ENSMUSG00000026131 nonsynonymous SNV ENSMUST00000115102:c.G785A:p.G262E 1qB NA NA chr1 34191957 CTGxAGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.99986 36 2 0 13.193193 0.454545 0.02 -0.096463 6 5 169 141 60 60 0 0 GG 5.715524 19 0 539 0 KEEP + Dst YES MNNG_2 chr1 34646120 34646120 G A UTR3 Amer3 NA NA UTR3 Fam123c NA NA UTR3 ENSMUSG00000045174 NA NA 1qB NA NA chr1 34646120 GGAxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 94 0 0 47.99711 0.452381 0.02 -0.377046 23 19 666 515 60 60 0 0 GG 12.935711 43 0 1233 0 KEEP + Amer3 YES MNNG_2 chr1 36621181 36621181 C T exonic Fam178b synonymous SNV NM_027957:c.G399A:p.Q133Q exonic Fam178b synonymous SNV uc007aqu.2:c.G399A:p.Q133Q exonic ENSMUSG00000046337 synonymous SNV ENSMUST00000170295:c.G1533A:p.Q511Q 1qB NA NA chr1 36621181 GGGxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 238 2 0 127.168359 0.444444 0.02 2.36485 65 52 1862 1373 60 60 0 0 CC 26.158899 87 0 2419 0 KEEP - Fam178b YES MNNG_2 chr1 36621235 36621235 C T exonic Fam178b synonymous SNV NM_027957:c.G345A:p.K115K exonic Fam178b synonymous SNV uc007aqu.2:c.G345A:p.K115K exonic ENSMUSG00000046337 synonymous SNV ENSMUST00000170295:c.G1479A:p.K493K 1qB NA NA chr1 36621235 GTCxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 174 0 0 88.250048 0.421687 0.02 1.048729 48 35 1366 961 60 60 0 0 CC 18.338771 61 0 1740 0 KEEP - Fam178b YES MNNG_2 chr1 36766668 36766668 G A exonic Actr1b nonsynonymous SNV NM_146107:c.C31T:p.P11S exonic Actr1b nonsynonymous SNV uc007aqx.1:c.C31T:p.P11S exonic ENSMUSG00000037351 nonsynonymous SNV ENSMUST00000043951:c.C31T:p.P11S 1qB NA NA chr1 36766668 CGGxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260929 0.260965 0.999863 47 0 0 20.997538 0.5 0.02 -0.140316 8 8 239 220 60 60 0 0 GG 5.413753 18 0 495 0 KEEP - Actr1b YES MNNG_2 chr1 36835990 36835990 C T exonic Zap70 synonymous SNV NM_009539:c.C912T:p.P304P exonic Zap70 synonymous SNV uc007aqz.1:c.C912T:p.P304P exonic ENSMUSG00000026117 synonymous SNV ENSMUST00000027291:c.C912T:p.P304P 1qB NA NA chr1 36835990 GCCxCGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 133 0 0 54.674727 0.360656 0.02 1.160307 39 22 1121 615 60 60 0 0 CC 17.702793 59 0 1582 0 KEEP + Zap70 YES MNNG_2 chr1 36850929 36850929 G A exonic Tmem131 nonsynonymous SNV NM_018872:c.C5309T:p.S1770F exonic Tmem131 nonsynonymous SNV uc007arc.1:c.C1592T:p.S531F exonic ENSMUSG00000026116 nonsynonymous SNV ENSMUST00000027290:c.C5309T:p.S1770F 1qB NA NA chr1 36850929 CAGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 126 0 0 74.363137 0.517857 0.02 1.20437 27 29 778 774 60 60 0 0 GG 13.485387 45 0 1225 0 KEEP - Tmem131 YES MNNG_2 chr1 37444695 37444695 G A exonic Inpp4a nonsynonymous SNV NM_172971:c.G1114A:p.D372N exonic Inpp4a nonsynonymous SNV uc011wjq.1:c.G1081A:p.D361N exonic ENSMUSG00000026113 nonsynonymous SNV ENSMUST00000058307:c.G1081A:p.D361N 1qB NA NA chr1 37444695 CGTxACG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 248 6 0 85.454128 0.413793 0.02 0.90739 51 36 1452 940 60 60 0 0 GG 34.893085 116 0 3303 0 KEEP + Inpp4a YES MNNG_2 chr1 37942059 37942059 C T splicing Mitd1(NM_026913:exon3:c.253+1G>A) NA NA splicing Mitd1(uc007asi.1:exon3:c.253+1G>A) NA NA splicing "ENSMUSG00000026088(ENSMUST00000139725:exon3:c.253+1G>A,ENSMUST00000027257:exon3:c.253+1G>A)" NA NA 1qB NA NA chr1 37942059 TTAxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 55 0 0 7.254217 0.428571 0.02 -0.061378 4 3 113 79 60 60 0 0 CC 12.030244 40 0 1094 0 KEEP - Mitd1 YES MNNG_2 chr1 40420231 40420231 G A intronic Il1rl2 NA NA intronic Il1rl2 NA NA intronic ENSMUSG00000070942 NA NA 1qB NA NA chr1 40420231 ATGxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076772 0.077336 0.992708 20 0 0 13.799004 0.555556 0.02 -0.078928 4 5 116 141 60 60 0 0 GG 3.00368 10 0 271 0 KEEP + Il1rl2 YES MNNG_2 chr1 43010467 43010467 C T intronic Gpr45 NA NA intronic Gpr45 NA NA exonic ENSMUSG00000079587 nonsynonymous SNV ENSMUST00000055874:c.C511T:p.P171S 1qB NA NA chr1 43010467 CATxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 188 2 0 62.483369 0.436364 0.02 1.212887 31 24 903 674 60 60 0 0 CC 29.157519 97 0 2716 0 KEEP + Gpr45 YES MNNG_2 chr1 4339308 4339308 G A exonic Rp1 nonsynonymous SNV NM_011283:c.C1661T:p.A554V exonic Rp1 nonsynonymous SNV uc007aex.2:c.C1661T:p.A554V exonic ENSMUSG00000025900 nonsynonymous SNV ENSMUST00000027032:c.C1661T:p.A554V 1qA1 NA NA chr1 4339308 AAAxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 88 2 0 33.591404 0.5 0.02 -0.236336 13 13 351 352 60 60 0 0 GG 15.039625 50 0 1399 0 KEEP - Rp1 YES MNNG_2 chr1 43831711 43831711 C T exonic Uxs1 synonymous SNV NM_026430:c.G573A:p.K191K exonic Uxs1 synonymous SNV uc007avq.1:c.G573A:p.K191K exonic ENSMUSG00000057363 synonymous SNV ENSMUST00000126008:c.G573A:p.K191K 1qC1.1 NA NA chr1 43831711 GCGxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 127 2 0 88.315749 0.615385 0.02 1.230592 20 32 564 881 60 60 0 0 CC 16.545165 55 0 1570 0 KEEP - Uxs1 YES MNNG_2 chr1 43862466 43862466 C T intronic Uxs1 NA NA intronic Uxs1 NA NA intronic ENSMUSG00000057363 NA NA 1qC1.1 NA NA chr1 43862466 AGAxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 260 2 0 44.813488 0.391304 0.02 -0.403395 28 18 810 496 60 60 0 0 CC 48.731023 162 0 4586 0 KEEP - Uxs1 YES MNNG_2 chr1 45395420 45395420 G A exonic Col3a1 nonsynonymous SNV NM_009930:c.G2282A:p.G761D exonic Col3a1 nonsynonymous SNV uc007awq.2:c.G2282A:p.G761D exonic ENSMUSG00000026043 nonsynonymous SNV ENSMUST00000172410:c.G1556A:p.G519D 1qC1.1 NA NA chr1 45395420 AGGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 113 0 0 54.339682 0.407407 0.02 1.221692 32 22 926 597 60 60 0 0 GG 12.313017 41 0 1104 0 KEEP + Col3a1 YES MNNG_2 chr1 46781855 46781855 C T intergenic "Dnah7b(dist=351460),Slc39a10(dist=82534)" NA NA intergenic "AK219219(dist=308799),BC048766(dist=66818)" NA NA intergenic "ENSMUSG00000078595(dist=98899),ENSMUSG00000025986(dist=82534)" NA NA 1qC1.1 "Score=0.93936;Name=No.199,chr1:53511208" NA chr1 46781855 TCTxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 159 0 0 64.000825 0.589744 0.02 -0.342006 16 23 459 645 60 60 0 0 CC 28.880454 96 0 2767 0 KEEP NA Dnah7b YES MNNG_2 chr1 4902561 4902561 G A exonic Rgs20 nonsynonymous SNV NM_021374:c.C365T:p.A122V exonic Rgs20 nonsynonymous SNV uc007afk.2:c.C365T:p.A122V exonic ENSMUSG00000002459 nonsynonymous SNV ENSMUST00000002533:c.C365T:p.A122V 1qA1 NA NA chr1 4902561 CCGxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099257 0.099721 0.995343 33 0 0 7.178523 0.3 0.02 -0.087697 7 3 202 84 60 60 0 0 GG 4.210708 14 0 386 0 KEEP - Rgs20 YES MNNG_2 chr1 54097345 54097345 C T UTR5 Hecw2 NA NA UTR5 Hecw2 NA NA UTR5 ENSMUSG00000042807 NA NA 1qC1.1 NA NA chr1 54097345 CTGxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.999859 49 2 0 24.345293 0.384615 0.02 -0.236766 16 10 463 271 60 60 0 0 CC 5.414415 18 0 505 0 KEEP - Hecw2 YES MNNG_2 chr1 54491067 54491067 C T exonic Gtf3c3 nonsynonymous SNV NM_001033194:c.G230A:p.G77E exonic Gtf3c3 nonsynonymous SNV uc007azp.1:c.G230A:p.G77E exonic ENSMUSG00000041303 nonsynonymous SNV ENSMUST00000041638:c.G230A:p.G77E 1qC1.1 NA NA chr1 54491067 ACCxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 99 0 0 30.23428 0.52381 0.02 -0.184168 10 11 290 313 60 60 0 0 CC 21.053926 70 0 1940 0 KEEP - Gtf3c3 YES MNNG_2 chr1 55228713 55228713 C T exonic Rftn2 nonsynonymous SNV NM_028713:c.G1444A:p.E482K exonic Rftn2 nonsynonymous SNV uc011wla.1:c.G787A:p.E263K exonic ENSMUSG00000025978 nonsynonymous SNV ENSMUST00000027121:c.G1444A:p.E482K 1qC1.2 NA NA chr1 55228713 GTTxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 184 2 0 74.505359 0.509091 0.02 1.302599 27 28 754 777 60 60 0 0 CC 27.97409 93 0 2619 0 KEEP - Rftn2 YES MNNG_2 chr1 56693335 56693335 C T exonic Hsfy2 nonsynonymous SNV NM_027661:c.G886A:p.V296M exonic Hsfy2 nonsynonymous SNV uc007bar.1:c.G886A:p.V296M exonic ENSMUSG00000045336 nonsynonymous SNV ENSMUST00000062085:c.G886A:p.V296M 1qC1.3 NA NA chr1 56693335 ACAxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552812 0.552887 0.999863 45 0 0 18.781839 0.333333 0.02 -0.219217 16 8 454 216 60 60 0 0 CC 6.016157 20 0 564 0 KEEP - Hsfy2 YES MNNG_2 chr1 58285773 58285773 C T exonic Aox4 synonymous SNV NM_023631:c.C667T:p.L223L exonic Aox4 synonymous SNV uc007bbo.1:c.C667T:p.L223L exonic ENSMUSG00000038242 synonymous SNV ENSMUST00000040442:c.C667T:p.L223L 1qC1.3 NA NA chr1 58285773 GAAxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 94 0 0 40.447883 0.457143 0.02 -0.306885 19 16 536 433 60 60 0 0 CC 12.63279 42 0 1181 0 KEEP + Aox4 YES MNNG_2 chr1 58770638 58770638 G A intronic Cflar NA NA intronic Cflar NA NA intronic ENSMUSG00000026031 NA NA 1qC1.3 NA NA chr1 58770638 TGGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 139 5 0 47.089591 0.418605 0.02 -0.377106 25 18 726 512 60 60 0 0 GG 23.160531 77 0 2146 0 KEEP + Cflar YES MNNG_2 chr1 59689961 59689961 C T intronic Gm973 NA NA intronic Gm973 NA NA intronic ENSMUSG00000047361 NA NA 1qC1.3 NA NA chr1 59689961 CTGxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076843 0.077336 0.993634 24 0 0 13.198451 0.555556 0.02 -0.078918 4 5 113 135 60 60 0 0 CC 3.609039 12 0 327 0 KEEP + Gm973 YES MNNG_2 chr1 59899634 59899634 G A exonic Bmpr2 nonsynonymous SNV NM_007561:c.G577A:p.A193T exonic Bmpr2 nonsynonymous SNV uc007bdz.1:c.G577A:p.A193T exonic ENSMUSG00000067336 nonsynonymous SNV ENSMUST00000087435:c.G577A:p.A193T 1qC1.3 NA NA chr1 59899634 GCAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 60 0 0 30.017676 0.428571 0.02 -0.245539 16 12 464 326 60 60 0 0 GG 7.517519 25 0 690 0 KEEP + Bmpr2 YES MNNG_2 chr1 64014236 64014236 C T ncRNA_exonic Gm13749 NA NA ncRNA_exonic OTTMUSG00000013918 NA NA ncRNA_exonic ENSMUSG00000044689 NA NA 1qC2 NA NA chr1 64014236 ACGxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 54 0 0 17.436201 0.466667 0.02 -0.140295 8 7 226 186 60 60 0 0 CC 8.419963 28 0 772 0 KEEP + Gm13749 YES MNNG_2 chr1 64125573 64125573 G A exonic Klf7 synonymous SNV NM_033563:c.C438T:p.R146R exonic Klf7 synonymous SNV uc007bgo.1:c.C438T:p.R146R exonic ENSMUSG00000025959 synonymous SNV ENSMUST00000055001:c.C438T:p.R146R 1qC2 NA NA chr1 64125573 ATGxCGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 192 0 0 109.159792 0.518519 0.02 1.083296 39 42 1124 1135 60 60 0 0 GG 28.269399 94 0 2563 0 KEEP - Klf7 YES MNNG_2 chr1 65108465 65108465 G A UTR3 Crygd NA NA UTR3 Crygd NA NA UTR3 ENSMUSG00000067299 NA NA 1qC2 NA NA chr1 65108465 AGGxTAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999997 49 1 0 9.976681 0.363636 0.02 -0.096468 7 4 204 112 60 60 0 0 GG 8.414482 28 0 762 0 KEEP - Crygd YES MNNG_2 chr1 71121481 71121481 C T exonic Bard1 nonsynonymous SNV NM_007525:c.G914A:p.G305E exonic Bard1 nonsynonymous SNV uc007bjm.2:c.G914A:p.G305E exonic ENSMUSG00000026196 nonsynonymous SNV ENSMUST00000027393:c.G914A:p.G305E 1qC3 NA NA chr1 71121481 CTCxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 96 2 0 60.034573 0.55 0.02 -0.350767 18 22 516 615 60 60 0 0 CC 14.739482 49 0 1379 0 KEEP - Bard1 YES MNNG_2 chr1 71659160 71659160 C T exonic Fn1 stopgain SNV NM_001276408:c.G3858A:p.W1286X exonic Fn1 stopgain SNV uc007bkb.1:c.G15A:p.W5X exonic ENSMUSG00000026193 stopgain SNV ENSMUST00000087254:c.G3858A:p.W1286X 1qC3 NA NA chr1 71659160 GGCxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 129 1 0 69.758213 0.541667 0.02 -0.428953 22 26 615 717 60 60 0 1 CC 17.133712 57 0 1567 0 KEEP - Fn1 YES MNNG_2 chr1 71699888 71699888 G A upstream "Apol7d,Fn1" NA NA exonic Gm15456 stopgain SNV uc007bke.1:c.G186A:p.W62X exonic ENSMUSG00000073652 stopgain SNV ENSMUST00000097699:c.G186A:p.W62X 1qC3 NA NA chr1 71699888 TTGxCCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322793 0.322807 0.999957 56 0 0 21.499818 0.5 0.02 -0.15781 8 8 227 225 60 60 0 0 GG 7.817464 26 0 711 0 KEEP + Apol7d YES MNNG_2 chr1 74396468 74396468 G A intronic Pnkd NA NA intronic Pnkd NA NA intronic ENSMUSG00000026179 NA NA 1qC3 NA NA chr1 74396468 AAAxAGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457467 0.457757 0.999366 40 0 0 19.953284 0.363636 0.02 -0.192939 14 8 409 224 60 60 0 0 GG 5.11421 17 0 489 0 KEEP + Pnkd YES MNNG_2 chr1 74847336 74847336 C T exonic Wnt10a synonymous SNV NM_009518:c.C606T:p.S202S exonic Wnt10a synonymous SNV uc007bnf.2:c.C606T:p.S202S exonic ENSMUSG00000026167 synonymous SNV ENSMUST00000006718:c.C606T:p.S202S 1qC3 NA NA chr1 74847336 CAGxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 248 4 0 162.553093 0.5 0.02 2.107729 62 62 1787 1703 60 60 0 0 CC 27.358163 91 0 2483 0 KEEP + Wnt10a YES MNNG_2 chr1 75479440 75479440 G A exonic Tmem198 nonsynonymous SNV NM_177056:c.G463A:p.G155R exonic Tmem198 nonsynonymous SNV uc007bpm.2:c.G463A:p.G155R exonic ENSMUSG00000051703 nonsynonymous SNV ENSMUST00000050899:c.G463A:p.G155R 1qC4 NA NA chr1 75479440 CTGxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 86 0 0 61.007472 0.489362 0.02 -0.420756 24 23 697 642 60 60 0 0 GG 9.023036 30 0 826 0 KEEP + Tmem198 YES MNNG_2 chr1 75483779 75483779 C T intronic Obsl1 NA NA intronic Obsl1 NA NA intronic ENSMUSG00000026211 NA NA 1qC4 NA NA chr1 75483779 CGCxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 358 4 0 193.60423 0.522388 0.02 2.394467 64 70 1822 2005 60 60 0 0 CC 48.104778 160 0 4437 0 KEEP - Obsl1 YES MNNG_2 chr1 75500072 75500072 C T exonic Obsl1 synonymous SNV NM_178884:c.G1404A:p.L468L exonic Obsl1 synonymous SNV uc007bpn.2:c.G1404A:p.L468L exonic ENSMUSG00000026211 synonymous SNV ENSMUST00000027412:c.G165A:p.L55L 1qC4 NA NA chr1 75500072 TGGxAGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 268 3 0 133.481367 0.486239 0.02 2.230489 56 53 1617 1410 60 60 0 0 CC 32.142298 107 0 2937 0 KEEP - Obsl1 YES MNNG_2 chr1 78413744 78413744 C T exonic Sgpp2 nonsynonymous SNV NM_001004173:c.C808T:p.P270S exonic Sgpp2 nonsynonymous SNV uc007bqe.1:c.C808T:p.P270S exonic ENSMUSG00000032908 nonsynonymous SNV ENSMUST00000036172:c.C808T:p.P270S 1qC4 NA NA chr1 78413744 CCAxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 201 4 0 109.199868 0.594203 0.02 1.090266 28 41 797 1099 60 60 0 0 CC 30.303115 101 0 2749 0 KEEP + Sgpp2 YES MNNG_2 chr1 78467709 78467709 C T exonic Farsb nonsynonymous SNV NM_001278075:c.G664A:p.V222I exonic Farsb nonsynonymous SNV uc007bqi.1:c.G367A:p.V123I exonic ENSMUSG00000026245 nonsynonymous SNV ENSMUST00000171087:c.G367A:p.V123I 1qC4 NA NA chr1 78467709 TAAxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 253 3 0 43.106337 0.352941 0.02 1.15015 33 18 934 489 60 60 0 0 CC 42.100281 140 0 3895 0 KEEP - Farsb YES MNNG_2 chr1 82495583 82495583 C T splicing Col4a4(NM_007735:exon24:c.1600-1G>A) NA NA splicing Col4a4(uc007brt.1:exon24:c.1600-1G>A) NA NA splicing "ENSMUSG00000067158(ENSMUST00000087027:exon25:c.1600-1G>A,ENSMUST00000087050:exon24:c.1600-1G>A)" NA NA 1qC5 NA NA chr1 82495583 TCCxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 111 1 0 44.631727 0.64 0.02 -0.227997 9 16 264 441 60 60 0 0 CC 21.942681 73 0 2067 0 KEEP - Col4a4 YES MNNG_2 chr1 82756699 82756699 G A intronic Tm4sf20 NA NA intronic Tm4sf20 NA NA intronic ENSMUSG00000026149 NA NA 1qC5 NA NA chr1 82756699 ACAxTTA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 65 0 0 12.238748 0.333333 0.02 -0.131552 10 5 296 140 60 60 0 0 GG 12.033008 40 0 1144 0 KEEP - Tm4sf20 YES MNNG_2 chr1 83000343 83000343 C T intergenic "Agfg1(dist=107493),Slc19a3(dist=8755)" NA NA intergenic "Agfg1(dist=107493),Slc19a3(dist=8755)" NA NA intergenic "ENSMUSG00000026159(dist=107493),ENSMUSG00000038496(dist=8755)" NA NA 1qC5 "Score=0.965761;Name=No.280,chr1:190795045" NA chr1 83000343 CGCxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 206 0 1 66.358422 0.382353 0.02 1.197223 42 26 1208 736 60 60 0 0 CC 31.537295 105 0 2913 0 KEEP NA Agfg1 YES MNNG_2 chr1 84724801 84724801 G A exonic Trip12 synonymous SNV NM_133975:c.C5467T:p.L1823L exonic Trip12 synonymous SNV uc007bsy.1:c.C5467T:p.L1823L exonic ENSMUSG00000026219 synonymous SNV ENSMUST00000027421:c.C5467T:p.L1823L 1qC5 NA NA chr1 84724801 CCAxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162114 0.162467 0.997832 32 0 0 15.574723 0.461538 0.02 -0.113754 7 6 187 166 60 60 0 0 GG 4.813419 16 0 461 0 KEEP - Trip12 YES MNNG_2 chr1 84909155 84909155 G A exonic Slc16a14 nonsynonymous SNV NM_027921:c.C1003T:p.P335S exonic Slc16a14 nonsynonymous SNV uc007btd.1:c.C1003T:p.P335S exonic ENSMUSG00000026220 nonsynonymous SNV ENSMUST00000027422:c.C1003T:p.P335S 1qC5 NA NA chr1 84909155 AAGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 48 0 0 29.399559 0.44 0.02 -0.219243 14 11 403 316 60 60 0 0 GG 5.113207 17 0 472 0 KEEP - Slc16a14 YES MNNG_2 chr1 88995771 88995771 C T intronic Alpi NA NA intronic Alpi NA NA intronic ENSMUSG00000079440 NA NA 1qD NA NA chr1 88995771 TTTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 75 1 0 33.2403 0.448276 0.02 -0.254213 16 13 446 357 60 60 0 0 CC 11.129519 37 0 1038 0 KEEP - Alpi YES MNNG_2 chr1 89044851 89044851 C T exonic Ecel1 synonymous SNV NM_001277925:c.G2178A:p.Q726Q exonic Ecel1 synonymous SNV uc007bwc.1:c.G2178A:p.Q726Q exonic ENSMUSG00000026247 synonymous SNV ENSMUST00000027463:c.G2178A:p.Q726Q 1qD NA NA chr1 89044851 GGAxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 152 1 0 53.394987 0.4 0.02 1.213232 33 22 954 590 60 60 0 0 CC 20.143229 67 0 1877 0 KEEP - Ecel1 YES MNNG_2 chr1 89049368 89049368 G A intronic Ecel1 NA NA intronic Ecel1 NA NA intronic ENSMUSG00000026247 NA NA 1qD NA NA chr1 89049368 AGGxAGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926513 0.92664 0.999863 78 4 0 53.68084 0.477273 0.02 -0.394532 23 21 658 569 60 60 0 0 GG 6.016287 20 0 567 0 KEEP - Ecel1 YES MNNG_2 chr1 89663566 89663566 C T exonic Atg16l1 nonsynonymous SNV NM_001205391:c.C575T:p.T192I exonic Atg16l1 nonsynonymous SNV uc007bxi.1:c.C575T:p.T192I exonic ENSMUSG00000026289 nonsynonymous SNV ENSMUST00000027512:c.C575T:p.T192I 1qD NA NA chr1 89663566 TCAxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 101 0 0 34.709166 0.541667 0.02 -0.21922 11 13 312 357 60 60 0 0 CC 18.301551 61 0 1648 0 KEEP + Atg16l1 YES MNNG_2 chr1 89685882 89685882 G A intronic Atg16l1 NA NA intronic Atg16l1 NA NA intronic ENSMUSG00000026289 NA NA 1qD NA NA chr1 89685882 TAGxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760818 0.760887 0.999909 65 0 0 42.10289 0.484848 0.02 -0.28937 17 16 480 444 60 60 0 0 GG 7.199176 24 0 656 0 KEEP + Atg16l1 YES MNNG_2 chr1 89922569 89922569 C T intergenic "Usp40(dist=17443),Ugt1a10(dist=29417)" NA NA intergenic "Usp40(dist=17443),Ugt1a10(dist=29417)" NA NA ncRNA_exonic ENSMUSG00000083478 NA NA 1qD "Score=0.961098;Name=No.335,chr1:89951073" NA chr1 89922569 AGAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 231 2 29 48.391435 0.384615 0.02 1.258639 32 20 914 539 60 60 0 0 CC 46.313814 154 0 4240 0 KEEP NA Usp40 YES MNNG_2 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 318 1 0 13.716867 0.062016 0.02 2.403793 121 8 3198 229 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO MNNG_2 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 284 5 0 12.318668 0.081395 0.02 1.039355 79 7 2279 195 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 YES MNNG_2 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 130 0 0 6.317895 0.108108 0.02 -0.324292 33 4 860 99 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 NO MNNG_2 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 200 8 0 9.620781 0.057692 0.02 2.380522 98 6 2844 167 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO MNNG_2 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 290 3 0 15.466781 0.087912 0.02 2.614108 83 8 2222 234 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO MNNG_2 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 360 4 0 28.31593 0.101911 0.02 3.194581 141 16 3980 431 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a YES MNNG_2 chr1 90144386 90144386 C T exonic Mroh2a synonymous SNV NM_001281466:c.C2809T:p.L937L exonic Heatr7b1 synonymous SNV uc011wov.1:c.C2818T:p.L940L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.C2809T:p.L937L 1qD NA NA chr1 90144386 CAGxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 168 3 0 18.651492 0.111111 0.02 0.79054 80 10 2322 275 60 60 0 0 CC 13.23414 44 0 1232 0 KEEP + Mroh2a YES MNNG_2 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 207 2 0 14.582957 0.101266 0.02 0.905952 71 8 2056 220 60 60 1 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a YES MNNG_2 chr1 90147949 90147949 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3319T:p.R1107W exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3328T:p.R1110W exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3319T:p.R1107W 1qD NA NA chr1 90147949 ATGxGGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 175 0 0 12.924178 0.114754 0.02 0.950656 54 7 1333 190 60 60 0 0 CC 28.221001 94 0 2168 0 KEEP + Mroh2a YES MNNG_2 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 184 0 0 20.57543 0.119048 0.02 1.148337 74 10 1974 291 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO MNNG_2 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 129 2 0 14.188068 0.145833 0.02 -0.438272 41 7 1091 195 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO MNNG_2 chr1 92974931 92974931 C T intronic Lrrfip1 NA NA intronic Lrrfip1 NA NA intronic ENSMUSG00000026305 NA NA 1qD NA NA chr1 92974931 TATxGCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 216 0 0 104.447767 0.52 0.02 1.028816 36 39 1001 1084 60 60 0 0 CC 31.870999 106 0 2892 0 KEEP + Lrrfip1 YES MNNG_2 chr1 94751471 94751471 C T exonic Gpc1 nonsynonymous SNV NM_016696:c.C362T:p.T121I exonic Gpc1 nonsynonymous SNV uc007cbs.1:c.C362T:p.T121I exonic ENSMUSG00000034220 nonsynonymous SNV ENSMUST00000045970:c.C362T:p.T121I 1qD NA NA chr1 94751471 GCAxACT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 202 2 0 106.631597 0.577465 0.02 0.95735 30 41 852 1081 60 60 0 0 CC 27.35239 91 0 2541 0 KEEP + Gpc1 YES MNNG_2 chr1 95186594 95186594 C T exonic Sned1 synonymous SNV NM_172463:c.C4050T:p.R1350R exonic Sned1 synonymous SNV uc007cdm.1:c.C4050T:p.R1350R exonic ENSMUSG00000047793 synonymous SNV ENSMUST00000062202:c.C4050T:p.R1350R 1qD NA NA chr1 95186594 CCGxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 159 2 0 52.941383 0.456522 0.02 -0.403353 25 21 700 567 60 60 0 0 CC 23.46058 78 0 2158 0 KEEP + Sned1 YES MNNG_2 chr1 95328107 95328107 G A intronic Hdlbp NA NA intronic Hdlbp NA NA intronic ENSMUSG00000034088 NA NA 1qD NA NA chr1 95328107 GGAxAGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099257 0.099721 0.995343 30 0 0 28.084206 1 0.02 -0.087667 0 9 0 238 0 60 0 0 GG 4.211702 14 0 403 0 KEEP - Hdlbp YES MNNG_2 chr1 99674090 99674090 G A exonic Gin1 synonymous SNV NM_026250:c.G327A:p.K109K exonic Gin1 synonymous SNV uc007cfm.1:c.G327A:p.K109K exonic ENSMUSG00000026333 synonymous SNV ENSMUST00000027571:c.G327A:p.K109K 1qD NA NA chr1 99674090 CAAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 78 0 0 32.184381 0.433333 0.02 -0.263041 17 13 474 349 60 60 0 0 GG 10.82786 36 0 1005 0 KEEP + Gin1 YES MNNG_2 chr1_random 1083918 1083918 G A intergenic "Hhipl2(dist=673517),NONE(dist=NONE)" NA NA intergenic "AK156902(dist=50173),Sp110(dist=33603)" NA NA intergenic "ENSMUSG00000091799(dist=60247),ENSMUSG00000079808(dist=33376)" NA NA NA "Score=0.989953;Name=No.74953,chr8_random:64776" NA chr1_random 1083918 CAGxAGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 86 0 18 10.757465 0.217391 0.02 -0.2017 18 5 521 136 60 40 0 0 GG 12.332984 41 0 1159 0 KEEP NA Hhipl2 YES MNNG_2 chr2 10013879 10013879 A G exonic Kin nonsynonymous SNV NM_025280:c.A911G:p.K304R exonic Kin nonsynonymous SNV uc008ihp.1:c.A911G:p.K304R exonic ENSMUSG00000037262 nonsynonymous SNV ENSMUST00000042512:c.A911G:p.K304R 2qA1 NA NA chr2 10013879 TTAxGGA A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 63 0 0 12.870548 0.3125 0.02 -0.140307 11 5 305 148 60 60 0 0 AA 11.730895 39 0 1088 0 KEEP + Kin NO MNNG_2 chr2 103287544 103287544 G A intronic Elf5 NA NA intronic Elf5 NA NA intronic ENSMUSG00000027186 NA NA 2qE2 NA NA chr2 103287544 GGGxTGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 97 0 0 52.619607 0.526316 0.02 -0.341965 18 20 509 545 60 60 0 0 GG 14.376369 48 0 1325 0 KEEP + Elf5 YES MNNG_2 chr2 105535471 105535471 C T exonic Pax6 synonymous SNV NM_001244201:c.C1041T:p.V347V exonic Pax6 synonymous SNV uc012cat.1:c.C438T:p.V146V exonic ENSMUSG00000027168 synonymous SNV ENSMUST00000173007:c.C438T:p.V146V 2qE3 NA NA chr2 105535471 AGTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 114 0 0 46.036963 0.365385 0.02 1.337545 33 19 951 518 60 60 0 0 CC 14.132198 47 0 1310 0 KEEP + Pax6 YES MNNG_2 chr2 115884464 115884464 C T exonic Meis2 nonsynonymous SNV NM_001136072:c.G542A:p.G181E exonic Meis2 nonsynonymous SNV uc008lqz.1:c.G104A:p.G35E exonic ENSMUSG00000027210 nonsynonymous SNV ENSMUST00000134314:c.G104A:p.G35E 2qE5 NA NA chr2 115884464 TTTxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 140 1 0 62.797459 0.510638 0.02 -0.429683 23 24 666 655 60 60 0 0 CC 19.846943 66 0 1846 0 KEEP - Meis2 YES MNNG_2 chr2 116990648 116990648 G A intronic Spred1 NA NA intronic Spred1 NA NA intronic ENSMUSG00000027351 NA NA 2qE5 NA NA chr2 116990648 AATxCTA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054133 0.054137 0.999931 38 0 0 16.301327 0.75 0.02 -0.070117 2 6 58 154 60 60 0 0 GG 7.521132 25 0 725 0 KEEP + Spred1 YES MNNG_2 chr2 118460946 118460946 G A exonic Bub1b nonsynonymous SNV NM_009773:c.G2435A:p.C812Y exonic Bub1b nonsynonymous SNV uc008lse.2:c.G2435A:p.C812Y exonic ENSMUSG00000040084 nonsynonymous SNV ENSMUST00000166245:c.G725A:p.C242Y 2qE5 NA NA chr2 118460946 TTTxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 81 0 0 36.323638 0.56 0.02 -0.219175 11 14 309 371 60 60 0 0 GG 14.13813 47 0 1332 0 KEEP + Bub1b YES MNNG_2 chr2 118923166 118923166 G A exonic Casc5 stopgain SNV NM_029617:c.G5751A:p.W1917X exonic Casc5 stopgain SNV uc008lta.1:c.G5751A:p.W1917X exonic ENSMUSG00000027326 stopgain SNV ENSMUST00000028802:c.G5751A:p.W1917X 2qE5 NA NA chr2 118923166 GTGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 56 2 0 17.072195 0.666667 0.02 -0.087692 3 6 86 167 60 60 0 0 GG 11.43035 38 0 1069 0 KEEP + Casc5 YES MNNG_2 chr2 119350493 119350493 G A intronic Exd1 NA NA intronic Exd1 NA NA intronic ENSMUSG00000048647 NA NA 2qE5 NA NA chr2 119350493 AGAxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.999869 34 0 0 10.799315 0.5 0.02 -0.070156 4 4 114 113 60 60 0 0 GG 6.316261 21 0 584 0 KEEP - Exd1 YES MNNG_2 chr2 119824242 119824242 G A exonic Mapkbp1 nonsynonymous SNV NM_011941:c.G142A:p.V48I exonic Mapkbp1 nonsynonymous SNV uc008luw.2:c.G142A:p.V48I exonic ENSMUSG00000033902 nonsynonymous SNV ENSMUST00000066058:c.G142A:p.V48I 2qE5 NA NA chr2 119824242 GGAxTAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 118 0 0 61.105383 0.547619 0.02 -0.429652 19 23 530 627 60 60 0 0 GG 18.047766 60 0 1684 0 KEEP + Mapkbp1 YES MNNG_2 chr2 120454955 120454955 G A intergenic "Haus2(dist=8401),Cdan1(dist=86935)" NA NA intergenic "Haus2(dist=8401),Stard9(dist=35724)" NA NA UTR5 ENSMUSG00000033705 NA NA 2qE5 NA NA chr2 120454955 GCGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.999859 57 0 0 29.7539 0.4 0.02 -0.26309 18 12 531 328 60 60 0 0 GG 5.414185 18 0 506 0 KEEP NA Haus2 YES MNNG_2 chr2 120992033 120992033 G A exonic Zscan29 synonymous SNV NM_178889:c.C942T:p.C314C exonic Zscan29 synonymous SNV uc008lxt.2:c.C624T:p.C208C exonic ENSMUSG00000050619 synonymous SNV ENSMUST00000052770:c.C624T:p.C208C 2qE5 NA NA chr2 120992033 GGGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 137 4 0 69.070277 0.491228 0.02 1.187037 29 28 799 729 60 60 0 0 GG 18.311577 61 0 1650 0 KEEP - Zscan29 YES MNNG_2 chr2 121041566 121041566 G A exonic Trp53bp1 nonsynonymous SNV NM_013735:c.C3488T:p.T1163I exonic "53BP1,Trp53bp1" nonsynonymous SNV uc008lyf.1:c.C641T:p.T214I exonic ENSMUSG00000043909 nonsynonymous SNV ENSMUST00000110645:c.C3473T:p.T1158I 2qE5 NA NA chr2 121041566 ACAxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 190 0 0 137.364874 0.6 0.02 0.941144 34 51 968 1379 60 60 0 0 GG 23.461394 78 0 2180 0 KEEP - Trp53bp1 YES MNNG_2 chr2 122423280 122423280 G A intronic Gatm NA NA intronic Gatm NA NA intronic ENSMUSG00000027199 NA NA 2qE5 NA NA chr2 122423280 AGAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717215 0.717315 0.99986 50 1 0 51.843792 0.655172 0.02 -0.271794 10 19 278 509 60 60 0 0 GG 5.714597 19 0 522 0 KEEP - Gatm YES MNNG_2 chr2 129441165 129441165 C T intronic Sirpa NA NA intronic Sirpa NA NA intronic ENSMUSG00000037902 NA NA 2qF1 NA NA chr2 129441165 TGTxTAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161897 0.162467 0.99649 32 0 0 9.623677 0.307692 0.02 -0.114009 9 4 262 112 60 60 0 0 CC 4.512465 15 0 430 0 KEEP + Sirpa YES MNNG_2 chr2 130100393 130100393 G A exonic Nop56 synonymous SNV NM_024193:c.G27A:p.E9E exonic Nop56 synonymous SNV uc008mil.1:c.G27A:p.E9E exonic ENSMUSG00000027405 synonymous SNV ENSMUST00000103198:c.G27A:p.E9E 2qF1 NA NA chr2 130100393 CGAxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 207 0 0 129.909525 0.521277 0.02 0.871074 45 49 1286 1348 60 60 0 0 GG 25.562215 85 0 2355 0 KEEP + Nop56 YES MNNG_2 chr2 130401897 130401897 G A upstream Oxt NA NA upstream Oxt NA NA upstream ENSMUSG00000027301 NA NA 2qF1 NA NA chr2 130401897 TGGxCCG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 172 0 0 86.252589 0.414634 0.02 1.030625 48 34 1372 942 60 60 0 0 GG 22.856875 76 0 2099 0 KEEP NA Oxt YES MNNG_2 chr2 130901435 130901435 G A exonic Siglec1 nonsynonymous SNV NM_011426:c.C3257T:p.A1086V exonic Siglec1 nonsynonymous SNV uc008mko.1:c.C3257T:p.A1086V exonic ENSMUSG00000027322 nonsynonymous SNV ENSMUST00000028794:c.C3257T:p.A1086V 2qF1 NA NA chr2 130901435 TGGxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 122 2 0 80.521317 0.525424 0.02 1.169658 28 31 782 835 60 60 0 0 GG 12.907921 43 0 1183 0 KEEP - Siglec1 YES MNNG_2 chr2 130970484 130970484 G A exonic Hspa12b nonsynonymous SNV NM_028306:c.G1588A:p.A530T exonic Hspa12b nonsynonymous SNV uc008mkr.1:c.G1588A:p.A530T exonic ENSMUSG00000074793 nonsynonymous SNV ENSMUST00000099349:c.G1588A:p.A530T 2qF1 NA NA chr2 130970484 CAGxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.581666 0.58293 0.997832 49 0 0 23.644061 0.384615 0.02 -0.227977 16 10 463 264 60 60 0 0 GG 4.722937 16 0 389 0 KEEP + Hspa12b YES MNNG_2 chr2 131681561 131681561 G A UTR3 Erv3 NA NA UTR3 Erv3 NA NA UTR3 ENSMUSG00000037482 NA NA 2qF2 NA NA chr2 131681561 TTGxTTA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119875 0.120436 0.995343 31 0 0 9.876587 0.363636 0.02 -0.096467 7 4 205 111 60 60 0 0 GG 4.211179 14 0 392 0 KEEP - Erv3 YES MNNG_2 chr2 136914947 136914947 C T splicing Jag1(NM_013822:exon16:c.1999+1G>A) NA NA splicing Jag1(uc008moz.1:exon16:c.1999+1G>A) NA NA splicing ENSMUSG00000027276(ENSMUST00000028735:exon16:c.1999+1G>A) NA NA 2qF3 NA NA chr2 136914947 TCAxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 186 0 0 68.047867 0.473684 0.02 1.195425 30 27 847 723 70 60 0 0 CC 29.171711 97 0 2684 0 KEEP - Jag1 YES MNNG_2 chr2 144411331 144411331 C T intronic Sec23b NA NA intronic Sec23b NA NA intronic ENSMUSG00000027429 NA NA 2qG1 NA NA chr2 144411331 ATGxAGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 65 0 0 13.916499 0.315789 0.02 -0.166609 13 6 366 162 60 60 0 0 CC 11.128301 37 0 1025 0 KEEP + Sec23b YES MNNG_2 chr2 145979621 145979621 C T intergenic "4930529M08Rik(dist=189659),Insm1(dist=68112)" NA NA exonic 4930529M08Rik synonymous SNV uc008msg.1:c.C1200T:p.R400R exonic ENSMUSG00000037143 synonymous SNV ENSMUST00000099283:c.C3435T:p.R1145R 2qG1 NA NA chr2 145979621 TCGxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 25 0 0 23.21388 0.727273 0.02 -0.096463 3 8 89 222 60 60 0 0 CC 3.609825 12 0 342 0 KEEP + 4930529M08Rik YES MNNG_2 chr2 151297044 151297044 C T UTR3 4921509C19Rik NA NA UTR3 4921509C19Rik NA NA UTR3 ENSMUSG00000061525 NA NA 2qG3 "Score=0.970459;Name=No.75389,chr2:150908817" NA chr2 151297044 GCTxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 78 2 0 37.487571 0.583333 0.02 -0.210399 10 14 291 379 60 60 0 0 CC 11.130073 37 0 1056 0 KEEP - 4921509C19Rik YES MNNG_2 chr2 152311755 152311755 G A exonic Defb22 nonsynonymous SNV NM_001002791:c.C245T:p.A82V exonic Defb22 nonsynonymous SNV uc008nfn.1:c.C245T:p.A82V exonic ENSMUSG00000027468 nonsynonymous SNV ENSMUST00000028966:c.C245T:p.A82V 2qH1 NA NA chr2 152311755 CCTxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 377 4 0 131.053194 0.40146 0.02 1.95873 82 55 2334 1449 60 60 0 0 GG 56.536775 188 0 5306 0 KEEP - Defb22 YES MNNG_2 chr2 152818950 152818950 G A intronic Ttll9 NA NA intronic Ttll9 NA NA intronic ENSMUSG00000074673 NA NA 2qH1 NA NA chr2 152818950 TGAxTGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 273 6 0 100.244266 0.41 0.02 2.407782 59 41 1631 1101 60 60 0 0 GG 38.783412 129 0 3548 0 KEEP + Ttll9 YES MNNG_2 chr2 152832611 152832611 G A intronic Ttll9 NA NA intronic Ttll9 NA NA intronic ENSMUSG00000074673 NA NA 2qH1 NA NA chr2 152832611 ACAxGCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865652 0.865745 0.999892 66 2 0 60.38944 0.564103 0.02 -0.341994 17 22 485 615 60 60 0 0 GG 6.911261 23 0 635 0 KEEP + Ttll9 YES MNNG_2 chr2 154030422 154030422 A G exonic Bpifb1 nonsynonymous SNV NM_001012392:c.A125G:p.Q42R exonic U46068 nonsynonymous SNV uc008niw.1:c.A125G:p.Q42R exonic ENSMUSG00000027485 nonsynonymous SNV ENSMUST00000028987:c.A125G:p.Q42R 2qH1 NA NA chr2 154030422 CCCxGGC A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119541 0.120436 0.99257 25 0 0 10.369948 0.454545 0.02 -0.096184 6 5 169 113 60 60 0 0 AA 2.406484 8 0 226 0 KEEP + Bpifb1 NO MNNG_2 chr2 154463867 154463867 G A exonic Zfp341 nonsynonymous SNV NM_199304:c.G1522A:p.D508N exonic Zfp341 nonsynonymous SNV uc008njo.1:c.G1522A:p.D508N exonic ENSMUSG00000059842 nonsynonymous SNV ENSMUST00000081926:c.G1522A:p.D508N 2qH1 NA NA chr2 154463867 AAGxACT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918159 0.918171 0.999988 78 2 0 50.215412 0.477273 0.02 -0.384976 23 21 652 535 60 60 0 0 GG 8.075923 27 0 739 0 KEEP + Zfp341 YES MNNG_2 chr2 155231865 155231865 G A exonic Ncoa6 nonsynonymous SNV NM_019825:c.C5254T:p.P1752S exonic Ncoa6 nonsynonymous SNV uc008nkm.1:c.C5254T:p.P1752S exonic ENSMUSG00000038369 nonsynonymous SNV ENSMUST00000043126:c.C5254T:p.P1752S 2qH1 NA NA chr2 155231865 AAGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999998 86 2 0 36.152632 0.4375 0.02 -0.385849 18 14 516 390 60 60 0 0 GG 10.22681 34 0 951 0 KEEP - Ncoa6 YES MNNG_2 chr2 156102389 156102389 G A exonic Phf20 nonsynonymous SNV NM_172674:c.G1276A:p.V426I exonic Phf20 nonsynonymous SNV uc008nmz.1:c.G58A:p.V20I exonic ENSMUSG00000038116 nonsynonymous SNV ENSMUST00000088600:c.G1276A:p.V426I 2qH1 NA NA chr2 156102389 GAAxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043541 0.043787 0.994391 24 0 0 7.554655 0.428571 0.02 -0.061381 4 3 112 82 60 60 0 0 GG 3.910229 13 0 363 0 KEEP + Phf20 YES MNNG_2 chr2 156178925 156178925 G A intronic Cnbd2 NA NA intronic 4921517L17Rik NA NA intronic ENSMUSG00000038085 NA NA 2qH1 NA NA chr2 156178925 TGTxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 62 0 0 37.965831 0.666667 0.02 -0.18413 7 14 201 371 60 60 0 0 GG 9.325845 31 0 892 0 KEEP + Cnbd2 YES MNNG_2 chr2 157952858 157952858 C T exonic Tgm2 synonymous SNV NM_009373:c.G1332A:p.K444K exonic Tgm2 synonymous SNV uc008npr.1:c.G1332A:p.K444K exonic ENSMUSG00000037820 synonymous SNV ENSMUST00000103122:c.G1332A:p.K444K 2qH1 NA NA chr2 157952858 GTAxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 114 1 0 61.601988 0.462963 0.02 1.222126 29 25 799 659 60 60 0 0 CC 14.735368 49 0 1340 0 KEEP - Tgm2 YES MNNG_2 chr2 158594147 158594147 C T exonic Fam83d nonsynonymous SNV NM_027975:c.C298T:p.P100S exonic Fam83d nonsynonymous SNV uc008nqq.2:c.C298T:p.P100S exonic ENSMUSG00000027654 nonsynonymous SNV ENSMUST00000029183:c.C298T:p.P100S 2qH1 NA NA chr2 158594147 TTTxCGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 91 0 0 36.512899 0.451613 0.02 -0.271728 17 14 471 391 60 60 0 0 CC 11.430741 38 0 1074 0 KEEP + Fam83d YES MNNG_2 chr2 160541495 160541495 C T exonic Top1 nonsynonymous SNV NM_009408:c.C1760T:p.T587I exonic Top1 nonsynonymous SNV uc008nqy.1:c.C1760T:p.T587I exonic ENSMUSG00000070544 nonsynonymous SNV ENSMUST00000109468:c.C1760T:p.T587I 2qH2 NA NA chr2 160541495 TGAxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 112 0 0 51.389489 0.575758 0.02 -0.289369 14 19 394 521 60 60 0 0 CC 16.844539 56 0 1573 0 KEEP + Top1 YES MNNG_2 chr2 174159687 174159687 C T intronic Gnas NA NA intronic Gnas NA NA intronic "ENSMUSG00000027523,ENSMUSG00000090625" NA NA 2qH4 NA NA chr2 174159687 TAAxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 66 0 0 28.422529 0.5 0.02 -0.201662 11 11 304 298 60 60 0 0 CC 11.127638 37 0 1011 0 KEEP + Gnas YES MNNG_2 chr2 180012733 180012733 C T exonic Rbbp8nl nonsynonymous SNV NM_173031:c.G1760A:p.S587N exonic BC066135 nonsynonymous SNV uc008oiv.1:c.G938A:p.S313N exonic ENSMUSG00000038980 nonsynonymous SNV ENSMUST00000038529:c.G1760A:p.S587N 2qH4 NA NA chr2 180012733 TGAxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 208 1 0 152.544133 0.504202 0.02 2.249548 59 60 1679 1598 60 60 0 0 CC 20.154557 67 0 1905 0 KEEP - Rbbp8nl YES MNNG_2 chr2 21748901 21748901 A G exonic Gpr158 nonsynonymous SNV NM_001004761:c.A3184G:p.K1062E exonic Gpr158 nonsynonymous SNV uc008inf.1:c.A3184G:p.K1062E exonic ENSMUSG00000045967 nonsynonymous SNV ENSMUST00000055946:c.A3184G:p.K1062E 2qA3 NA NA chr2 21748901 GACxAGA A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 68 0 0 62.51841 1 0.02 -0.175315 0 20 0 530 0 60 0 0 AA 12.031041 40 0 1104 0 KEEP + Gpr158 NO MNNG_2 chr2 22444886 22444886 G A intronic Myo3a NA NA intronic Myo3a NA NA ncRNA_exonic ENSMUSG00000083563 NA NA 2qA3 NA NA chr2 22444886 TGGxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 171 9 16 15.069057 0.352941 0.02 -0.149084 11 6 316 170 60 60 0 0 GG 36.096774 120 0 3415 0 KEEP + Myo3a YES MNNG_2 chr2 23400266 23400266 C T exonic Spopl stopgain SNV NM_001165998:c.G30A:p.W10X exonic Spopl stopgain SNV uc008ioj.2:c.G30A:p.W10X exonic ENSMUSG00000026771 nonsynonymous SNV ENSMUST00000132484:c.G352A:p.E118K 2qA3 NA NA chr2 23400266 TACxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 59 0 0 8.024377 0.5 0.02 -0.052617 3 3 86 84 60 60 0 0 CC 13.533778 45 0 1250 0 KEEP - Spopl YES MNNG_2 chr2 24827562 24827562 G A UTR3 Dph7 NA NA UTR3 Wdr85 NA NA UTR3 ENSMUSG00000026975 NA NA 2qA3 NA NA chr2 24827562 AGTxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 56 0 0 32.492114 0.571429 0.02 -0.184154 9 12 263 330 60 60 0 0 GG 7.514494 25 0 692 0 KEEP + Dph7 YES MNNG_2 chr2 24945782 24945782 G A exonic Noxa1 stopgain SNV NM_001163626:c.C520T:p.Q174X exonic Noxa1 stopgain SNV uc008iqh.2:c.C520T:p.Q174X exonic ENSMUSG00000036805 stopgain SNV ENSMUST00000044018:c.C520T:p.Q174X 2qA3 NA NA chr2 24945782 GCTxTAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 184 3 0 83.25182 0.414634 0.02 0.860815 48 34 1333 912 60 60 0 0 GG 22.548141 75 0 2074 0 KEEP - Noxa1 YES MNNG_2 chr2 25037226 25037226 G A UTR3 Nrarp NA NA UTR3 Nrarp NA NA UTR3 ENSMUSG00000078202 NA NA 2qA3 NA NA chr2 25037226 CTAxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.486967 0.490544 0.992708 35 0 0 36.134031 0.590909 0.02 -0.201698 9 13 264 364 60 60 0 0 GG 3.008361 10 0 288 0 KEEP + Nrarp YES MNNG_2 chr2 25094840 25094840 G A exonic 2310002J15Rik nonsynonymous SNV NM_026415:c.C179T:p.T60I exonic 2310002J15Rik nonsynonymous SNV uc008iqv.2:c.C179T:p.T60I exonic ENSMUSG00000036731 nonsynonymous SNV ENSMUST00000043379:c.C179T:p.T60I 2qA3 NA NA chr2 25094840 GTAxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 96 2 0 44.926382 0.428571 0.02 -0.36828 24 18 681 488 60 60 0 0 GG 11.720791 39 0 1066 0 KEEP - 2310002J15Rik YES MNNG_2 chr2 25315734 25315734 G A exonic BC029214 nonsynonymous SNV NM_153557:c.C380T:p.T127I exonic BC029214 nonsynonymous SNV uc008ise.1:c.C380T:p.T127I exonic ENSMUSG00000047617 nonsynonymous SNV ENSMUST00000114261:c.C380T:p.T127I 2qA3 NA NA chr2 25315734 AGAxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 182 1 0 144.563974 0.55102 0.02 0.827096 44 54 1266 1481 60 60 0 0 GG 21.641909 72 0 2027 0 KEEP - BC029214 YES MNNG_2 chr2 25421872 25421872 G A exonic Mamdc4 synonymous SNV NM_001081199:c.C2130T:p.D710D exonic Mamdc4 synonymous SNV uc008iso.1:c.C2130T:p.D710D exonic ENSMUSG00000026941 synonymous SNV ENSMUST00000114221:c.C1881T:p.D627D 2qA3 NA NA chr2 25421872 TGGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 162 1 0 99.021892 0.4875 0.02 0.993809 41 39 1133 1045 60 60 0 0 GG 20.449249 68 0 1850 0 KEEP - Mamdc4 YES MNNG_2 chr2 25422899 25422899 G A exonic Mamdc4 nonsynonymous SNV NM_001081199:c.C1589T:p.A530V exonic Mamdc4 nonsynonymous SNV uc008iso.1:c.C1589T:p.A530V exonic ENSMUSG00000026941 nonsynonymous SNV ENSMUST00000095117:c.C1589T:p.A530V 2qA3 NA NA chr2 25422899 CCGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 210 2 0 124.612194 0.462264 0.02 2.461805 57 49 1597 1330 60 60 0 0 GG 21.268666 80 1 2178 26 KEEP - Mamdc4 YES MNNG_2 chr2 25532656 25532656 G A exonic Lcn6 nonsynonymous SNV NM_001276448:c.G148A:p.V50M exonic Lcn6 nonsynonymous SNV uc012bse.1:c.G148A:p.V50M exonic ENSMUSG00000045684 nonsynonymous SNV ENSMUST00000114199:c.G148A:p.V50M 2qA3 NA NA chr2 25532656 ATGxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 79 2 0 32.644351 0.419355 0.02 -0.271823 18 13 499 356 60 60 0 0 GG 11.128683 37 0 1022 0 KEEP + Lcn6 YES MNNG_2 chr2 26699369 26699369 G A exonic Abo nonsynonymous SNV NM_030718:c.C337T:p.L113F exonic Abo nonsynonymous SNV uc008iwb.1:c.C337T:p.L113F exonic ENSMUSG00000015787 nonsynonymous SNV ENSMUST00000102900:c.C337T:p.L113F 2qA3 NA NA chr2 26699369 CAAxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 61 0 0 41.755822 0.535714 0.02 -0.26307 13 15 370 430 60 60 0 0 GG 9.02383 30 0 838 0 KEEP - Abo YES MNNG_2 chr2 26864216 26864216 G A exonic Adamts13 synonymous SNV NM_001001322:c.G4068A:p.G1356G exonic Adamts13 synonymous SNV uc008iwp.1:c.G4068A:p.G1356G exonic ENSMUSG00000014852 synonymous SNV ENSMUST00000102891:c.G4068A:p.G1356G 2qA3 NA NA chr2 26864216 GGGxACC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 148 0 0 77.831136 0.418919 0.02 1.037532 43 31 1244 849 60 60 0 0 GG 16.24326 54 0 1526 0 KEEP + Adamts13 YES MNNG_2 chr2 28324445 28324445 G A exonic Mrps2 nonsynonymous SNV NM_001166031:c.G208A:p.G70R exonic "MRP-S2,Mrps2" nonsynonymous SNV uc008iyg.1:c.G385A:p.G129R exonic ENSMUSG00000035772 nonsynonymous SNV ENSMUST00000038600:c.G265A:p.G89R 2qA3 NA NA chr2 28324445 CTGxGAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 120 2 0 73.512565 0.482759 0.02 1.186762 30 28 832 776 60 60 0 0 GG 12.633658 42 0 1180 0 KEEP + Mrps2 YES MNNG_2 chr2 28399926 28399926 G A intronic Ralgds NA NA intronic Ralgds NA NA intronic ENSMUSG00000026821 NA NA 2qA3 NA NA chr2 28399926 CGGxGCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959857 0.959859 0.999998 97 0 0 61.456551 0.469388 0.02 -0.438473 26 23 754 652 60 60 0 0 GG 9.890656 33 0 895 0 KEEP + Ralgds YES MNNG_2 chr2 29002312 29002312 G A exonic Setx synonymous SNV NM_198033:c.G3288A:p.K1096K exonic Setx synonymous SNV uc008izm.1:c.G3288A:p.K1096K exonic ENSMUSG00000043535 synonymous SNV ENSMUST00000061578:c.G3288A:p.K1096K 2qA3 NA NA chr2 29002312 GAAxAGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 51 0 0 30.950337 0.647059 0.02 -0.157847 6 11 174 305 60 60 0 0 GG 8.422945 28 0 800 0 KEEP + Setx YES MNNG_2 chr2 29003827 29003827 G A exonic Setx synonymous SNV NM_198033:c.G4803A:p.Q1601Q exonic Setx synonymous SNV uc008izm.1:c.G4803A:p.Q1601Q exonic ENSMUSG00000043535 synonymous SNV ENSMUST00000061578:c.G4803A:p.Q1601Q 2qA3 NA NA chr2 29003827 TCAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 71 0 0 22.127973 0.409091 0.02 -0.192917 13 9 371 243 60 60 0 0 GG 13.231179 44 0 1215 0 KEEP + Setx YES MNNG_2 chr2 29880476 29880476 G A exonic Sptan1 nonsynonymous SNV NM_001076554:c.G5827A:p.V1943M exonic Spna2 nonsynonymous SNV uc008jat.1:c.G2617A:p.V873M exonic ENSMUSG00000057738 nonsynonymous SNV ENSMUST00000046257:c.G5812A:p.V1938M 2qB NA NA chr2 29880476 AAGxTGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 40 0 0 17.815133 0.388889 0.02 -0.157853 11 7 315 197 60 60 0 0 GG 5.714855 19 0 527 0 KEEP + Sptan1 YES MNNG_2 chr2 29885217 29885217 G A intronic Sptan1 NA NA intronic Spna2 NA NA intronic ENSMUSG00000057738 NA NA 2qB NA NA chr2 29885217 TTAxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 87 2 0 62.815919 0.69697 0.02 -0.297426 10 23 222 606 60 60 0 0 GG 11.129088 37 0 1031 0 KEEP + Sptan1 YES MNNG_2 chr2 30029255 30029255 G A exonic Endog nonsynonymous SNV NM_007931:c.G647A:p.G216E exonic Endog nonsynonymous SNV uc008jbk.1:c.G647A:p.G216E exonic ENSMUSG00000015337 nonsynonymous SNV ENSMUST00000015481:c.G647A:p.G216E 2qB NA NA chr2 30029255 TTGxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 76 0 0 48.653153 0.514286 0.02 -0.323239 17 18 493 506 60 60 0 0 GG 9.024145 30 0 844 0 KEEP + Endog YES MNNG_2 chr2 30032811 30032811 G A intronic D2Wsu81e NA NA intronic D2Wsu81e NA NA intronic ENSMUSG00000039660 NA NA 2qB NA NA chr2 30032811 CCTxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 107 2 0 44.250554 0.512195 0.02 -0.36577 20 21 582 468 60 60 0 0 GG 14.989599 50 0 1388 0 KEEP - D2Wsu81e YES MNNG_2 chr2 30291171 30291171 G A exonic Ppp2r4 nonsynonymous SNV NM_138748:c.G430A:p.G144R exonic Ppp2r4 nonsynonymous SNV uc008jcn.2:c.G430A:p.G144R exonic ENSMUSG00000039515 nonsynonymous SNV ENSMUST00000113603:c.G304A:p.G102R 2qB NA NA chr2 30291171 GTGxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 135 3 0 83.521467 0.492063 0.02 1.241048 32 31 926 877 60 60 0 0 GG 14.736031 49 0 1356 0 KEEP + Ppp2r4 YES MNNG_2 chr2 31287657 31287657 G A intergenic "Ncs1(dist=136666),Ass1(dist=38133)" NA NA intergenic "Ncs1(dist=136666),Hmcn2(dist=5925)" NA NA exonic ENSMUSG00000055632 synonymous SNV ENSMUST00000113532:c.G12213A:p.P4071P 2qB NA NA chr2 31287657 CCCxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 176 6 0 86.35806 0.459459 0.02 0.94012 40 34 984 923 60 60 0 0 GG 22.122837 74 0 1790 0 KEEP NA Ncs1 YES MNNG_2 chr2 31499346 31499346 G A exonic Prdm12 nonsynonymous SNV NM_001123362:c.G454A:p.A152T exonic Prdm12 nonsynonymous SNV uc012bto.1:c.G454A:p.A152T exonic ENSMUSG00000079466 nonsynonymous SNV ENSMUST00000113470:c.G454A:p.A152T 2qB NA NA chr2 31499346 GATxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 158 2 0 70.527607 0.474576 0.02 1.062613 31 28 876 749 60 60 0 0 GG 19.826647 69 1 1946 8 KEEP + Prdm12 YES MNNG_2 chr2 32161700 32161700 G A exonic Golga2 synonymous SNV NM_001080968:c.G2649A:p.Q883Q exonic Golga2 synonymous SNV uc008jey.1:c.G1620A:p.Q540Q exonic ENSMUSG00000002546 synonymous SNV ENSMUST00000081670:c.G2517A:p.Q839Q 2qB NA NA chr2 32161700 CCAxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 98 0 0 65.303559 0.446429 0.02 1.293662 31 25 906 701 60 60 0 0 GG 9.626617 32 0 918 0 KEEP + Golga2 YES MNNG_2 chr2 32255939 32255939 G A exonic Ptges2 nonsynonymous SNV NM_133783:c.G550A:p.V184I exonic Ptges2 nonsynonymous SNV uc008jfm.2:c.G550A:p.V184I exonic ENSMUSG00000026820 nonsynonymous SNV ENSMUST00000028162:c.G550A:p.V184I 2qB NA NA chr2 32255939 GAGxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 53 0 0 26.224216 0.333333 0.02 -0.289384 22 11 644 301 60 60 0 0 GG 5.413903 18 0 503 0 KEEP + Ptges2 YES MNNG_2 chr2 32418949 32418949 G A exonic Fam102a nonsynonymous SNV NM_153560:c.G425A:p.G142D exonic Fam102a nonsynonymous SNV uc008jfs.1:c.G425A:p.G142D exonic ENSMUSG00000039157 nonsynonymous SNV ENSMUST00000048375:c.G425A:p.G142D 2qB NA NA chr2 32418949 TTGxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 99 0 0 65.960586 0.585366 0.02 -0.368306 17 24 489 666 60 60 0 0 GG 12.63312 42 0 1169 0 KEEP + Fam102a YES MNNG_2 chr2 32426762 32426762 G A exonic Dpm2 nonsynonymous SNV NM_010073:c.G40A:p.V14I exonic Dpm2 nonsynonymous SNV uc008jfu.1:c.G40A:p.V14I exonic ENSMUSG00000026810 nonsynonymous SNV ENSMUST00000028151:c.G40A:p.V14I 2qB NA NA chr2 32426762 CTTxTCG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 78 0 0 35.311158 0.441176 0.02 -0.31554 19 15 532 383 60 60 0 0 GG 9.925805 33 0 922 0 KEEP + Dpm2 YES MNNG_2 chr2 32542032 32542032 G A intronic Fpgs NA NA intronic Fpgs NA NA intronic ENSMUSG00000009566 NA NA 2qB NA NA chr2 32542032 ACGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 85 0 0 61.080616 0.522727 0.02 -0.393769 21 23 567 633 60 60 0 0 GG 9.324903 31 0 873 0 KEEP - Fpgs YES MNNG_2 chr2 33013371 33013371 G A exonic Ralgps1 synonymous SNV NM_175211:c.C1116T:p.D372D exonic Ralgps1 synonymous SNV uc008jhm.1:c.C1116T:p.D372D exonic ENSMUSG00000038831 synonymous SNV ENSMUST00000091039:c.C1116T:p.D372D 2qB NA NA chr2 33013371 ACTxTCG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.91817 0.918171 0.999999 92 0 0 58.438558 0.522727 0.02 -0.385749 21 23 577 607 60 60 0 0 GG 10.827684 36 0 1000 0 KEEP - Ralgps1 YES MNNG_2 chr2 33014490 33014490 G A exonic Ralgps1 nonsynonymous SNV NM_175211:c.C977T:p.A326V exonic Ralgps1 nonsynonymous SNV uc008jho.1:c.C926T:p.A309V exonic ENSMUSG00000038831 nonsynonymous SNV ENSMUST00000042615:c.C926T:p.A309V 2qB NA NA chr2 33014490 CCGxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 166 0 0 127.433142 0.563218 0.02 0.834859 38 49 1087 1300 60 60 0 0 GG 16.239896 54 0 1473 0 KEEP - Ralgps1 YES MNNG_2 chr2 35030582 35030582 G A intronic Cep110 NA NA intronic Cep110 NA NA intronic ENSMUSG00000057110 NA NA 2qB NA NA chr2 35030582 TAAxCGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.25975 0.260965 0.995343 33 0 0 19.260414 0.5 0.02 -0.139891 8 8 232 203 60 60 0 0 GG 4.211749 14 0 404 0 KEEP + Cep110 YES MNNG_2 chr2 36960519 36960519 G A exonic Olfr362 nonsynonymous SNV NM_147051:c.C650T:p.S217F exonic Olfr362 nonsynonymous SNV uc008jmk.1:c.C650T:p.S217F exonic ENSMUSG00000075377 nonsynonymous SNV ENSMUST00000100144:c.C650T:p.S217F 2qB NA NA chr2 36960519 AGGxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 63 0 0 21.432607 0.5 0.02 -0.139586 8 8 214 224 60 60 0 0 GG 11.732069 39 0 1111 0 KEEP - Olfr362 YES MNNG_2 chr2 37373069 37373069 G A exonic Gpr21 nonsynonymous SNV NM_177383:c.G106A:p.V36I exonic Gpr21 nonsynonymous SNV uc008jna.1:c.G106A:p.V36I exonic ENSMUSG00000053164 nonsynonymous SNV ENSMUST00000065441:c.G106A:p.V36I 2qB NA NA chr2 37373069 ATTxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 119 0 0 57.534309 0.611111 0.02 -0.315621 14 22 392 575 60 60 0 0 GG 20.436171 68 0 1886 0 KEEP + Gpr21 YES MNNG_2 chr2 40758891 40758891 C T exonic Lrp1b nonsynonymous SNV NM_053011:c.G7871A:p.G2624D exonic Lrp1b nonsynonymous SNV uc008jon.1:c.G7871A:p.G2624D exonic ENSMUSG00000049252 nonsynonymous SNV ENSMUST00000052550:c.G7964A:p.G2655D 2qB NA NA chr2 40758891 CAAxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 149 0 0 51.641452 0.456522 0.02 -0.403229 25 21 667 554 60 60 0 0 CC 24.653773 82 0 2213 0 KEEP - Lrp1b YES MNNG_2 chr2 59176843 59176843 C A exonic Pkp4 nonsynonymous SNV NM_026361:c.C2276A:p.A759D exonic Pkp4 nonsynonymous SNV uc008jtf.1:c.C1253A:p.A418D exonic ENSMUSG00000026991 nonsynonymous SNV ENSMUST00000112577:c.C1253A:p.A418D 2qC1.1 NA NA chr2 59176843 AGGxCCG C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120431 0.120436 0.999957 39 0 0 23.013999 0.727273 0.02 -0.096458 3 8 85 220 60 60 0 0 CC 7.820422 26 0 723 0 KEEP + Pkp4 NO MNNG_2 chr2 60596809 60596809 G A intronic Rbms1 NA NA intronic Rbms1 NA NA intronic ENSMUSG00000026970 NA NA 2qC1.2 NA NA chr2 60596809 CAAxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 75 0 0 13.684679 0.428571 0.02 -0.12246 8 6 241 150 60 60 0 0 GG 15.040589 50 0 1419 0 KEEP - Rbms1 YES MNNG_2 chr2 62186550 62186550 C T intronic Dpp4 NA NA intronic Dpp4 NA NA intronic ENSMUSG00000035000 NA NA 2qC1.3 NA NA chr2 62186550 AAGxTAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 260 8 0 52.280559 0.428571 0.02 -0.429679 28 21 806 568 60 60 0 0 CC 45.720988 152 0 4275 0 KEEP - Dpp4 YES MNNG_2 chr2 62436031 62436031 C T exonic Ifih1 nonsynonymous SNV NM_001164477:c.G2866A:p.E956K exonic Ifih1 nonsynonymous SNV uc012bvy.1:c.G2866A:p.E956K exonic ENSMUSG00000026896 nonsynonymous SNV ENSMUST00000112459:c.G2866A:p.E956K 2qC1.3 NA NA chr2 62436031 ATTxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 60 0 0 7.854675 0.428571 0.02 -0.061392 4 3 119 85 60 60 0 0 CC 11.730287 39 0 1099 0 KEEP - Ifih1 YES MNNG_2 chr2 62436287 62436287 C T exonic Ifih1 synonymous SNV NM_001164477:c.G2700A:p.K900K exonic Ifih1 synonymous SNV uc012bvy.1:c.G2700A:p.K900K exonic ENSMUSG00000026896 synonymous SNV ENSMUST00000112459:c.G2700A:p.K900K 2qC1.3 NA NA chr2 62436287 TTTxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 155 0 0 35.309668 0.541667 0.02 -0.210474 11 13 324 363 60 60 0 0 CC 31.58733 105 0 3031 0 KEEP - Ifih1 YES MNNG_2 chr2 6361612 6361612 G A exonic Usp6nl synonymous SNV NM_181399:c.G1353A:p.Q451Q exonic Usp6nl synonymous SNV uc008igl.1:c.G1353A:p.Q451Q exonic ENSMUSG00000039046 synonymous SNV ENSMUST00000042503:c.G1353A:p.Q451Q 2qA1 NA NA chr2 6361612 CCAxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 60 0 0 25.155733 0.47619 0.02 -0.19291 11 10 318 267 60 60 0 0 GG 8.422289 28 0 787 0 KEEP + Usp6nl YES MNNG_2 chr2 65201470 65201470 C T exonic Slc38a11 nonsynonymous SNV NM_177074:c.G94A:p.G32R exonic Slc38a11 nonsynonymous SNV uc008jwj.1:c.G94A:p.G32R exonic ENSMUSG00000061171 nonsynonymous SNV ENSMUST00000112418:c.G94A:p.G32R 2qC1.3 NA NA chr2 65201470 TCCxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 60 0 0 23.683243 0.473684 0.02 -0.166625 10 9 295 251 60 60 0 0 CC 9.61035 32 0 888 0 KEEP - Slc38a11 YES MNNG_2 chr2 71204662 71204662 G T intronic Slc25a12 NA NA intronic Slc25a12 NA NA intronic ENSMUSG00000027010 NA NA 2qC2 NA NA chr2 71204662 CTGxTTA G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16171 0.162467 0.995343 28 0 0 15.418908 0.75 0.02 -0.113409 2 6 37 145 60 60 0 0 GG 4.198935 14 0 351 0 KEEP - Slc25a12 NO MNNG_2 chr2 72818309 72818309 G A exonic Sp3 nonsynonymous SNV NM_001018042:c.C5T:p.T2I exonic Sp3 nonsynonymous SNV uc008kcc.1:c.C5T:p.T2I exonic ENSMUSG00000027109 nonsynonymous SNV ENSMUST00000066003:c.C5T:p.T2I 2qC3 NA NA chr2 72818309 CCGxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 376 5 0 52.977135 0.488372 0.02 1.285103 22 21 621 559 60 60 0 0 GG 77.136217 257 0 6930 0 KEEP - Sp3 YES MNNG_2 chr2 73275343 73275343 G A exonic Wipf1 nonsynonymous SNV NM_153138:c.C767T:p.P256L exonic Wipf1 nonsynonymous SNV uc008kcu.1:c.C767T:p.P256L exonic ENSMUSG00000075284 nonsynonymous SNV ENSMUST00000094681:c.C767T:p.P256L 2qC3 NA NA chr2 73275343 GGGxGCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99979 0.999881 0.999909 116 0 0 147.013878 0.6 0.02 0.986991 36 54 1035 1476 60 60 0 0 GG 7.217685 24 0 660 0 KEEP - Wipf1 YES MNNG_2 chr2 76485891 76485891 G C exonic Prkra nonsynonymous SNV NM_011871:c.C23G:p.A8G exonic Prkra nonsynonymous SNV uc008kff.1:c.C23G:p.A8G exonic ENSMUSG00000002731 nonsynonymous SNV ENSMUST00000002808:c.C23G:p.A8G 2qC3 NA NA chr2 76485891 TCGxCAC G C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 56 0 0 8.131299 0.266667 0.02 -0.149016 11 4 306 100 60 60 0 0 GG 7.78323 26 0 680 0 KEEP - Prkra NO MNNG_2 chr2 76561361 76561361 C T exonic Ttn nonsynonymous SNV NM_028004:c.G67987A:p.V22663I exonic Ttn nonsynonymous SNV uc008kfo.1:c.G67987A:p.V22663I exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.G67987A:p.V22663I 2qC3 NA NA chr2 76561361 TAAxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 189 0 0 61.703179 0.446429 0.02 1.302708 31 25 842 665 60 60 0 0 CC 31.840508 106 0 2840 0 KEEP - Ttn YES MNNG_2 chr2 76572412 76572412 C T exonic Ttn stopgain SNV NM_028004:c.G60456A:p.W20152X exonic Ttn stopgain SNV uc008kfo.1:c.G60456A:p.W20152X exonic ENSMUSG00000051747 stopgain SNV ENSMUST00000011934:c.G60456A:p.W20152X 2qC3 NA NA chr2 76572412 GTGxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 64 0 0 19.053309 0.363636 0.02 -0.192901 14 8 388 215 60 60 0 0 CC 10.225144 34 0 937 0 KEEP - Ttn YES MNNG_2 chr2 76877523 76877523 C T exonic Ccdc141 synonymous SNV NM_001025576:c.G2694A:p.E898E exonic Ccdc141 synonymous SNV uc012bxr.1:c.G2694A:p.E898E exonic ENSMUSG00000044033 synonymous SNV ENSMUST00000049544:c.G2694A:p.E898E 2qC3 NA NA chr2 76877523 GTAxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 189 7 0 107.655369 0.482759 0.02 0.932376 45 42 1277 1138 60 60 0 0 CC 22.25811 74 0 2068 0 KEEP - Ccdc141 YES MNNG_2 chr2 80678282 80678282 G A intergenic "Nup35(dist=178054),Zfp804a(dist=1215533)" NA NA upstream AK199495 NA NA ncRNA_exonic ENSMUSG00000064193 NA NA 2qC3 "Score=0.997022;Name=No.70000,chr18:48206364" NA chr2 80678282 ATTxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 245 2 99 47.984966 0.416667 0.02 -0.420621 28 20 795 526 43 43 0 0 GG 30.676263 102 0 2860 0 KEEP NA Nup35 YES MNNG_2 chr2 84456897 84456897 G A exonic Ctnnd1 nonsynonymous SNV NM_001085449:c.C857T:p.A286V exonic Ctnnd1 nonsynonymous SNV uc008kiu.1:c.C719T:p.A240V exonic ENSMUSG00000034101 nonsynonymous SNV ENSMUST00000111675:c.C191T:p.A64V 2qD NA NA chr2 84456897 GCAxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 116 3 0 73.878457 0.54717 0.02 1.222805 24 29 685 760 60 60 0 0 GG 15.626412 52 0 1452 0 KEEP - Ctnnd1 YES MNNG_2 chr2 86818754 86818754 C T exonic Olfr1100 synonymous SNV NM_146594:c.G198A:p.L66L exonic Olfr1100 synonymous SNV uc008kne.1:c.G198A:p.L66L exonic ENSMUSG00000070875 synonymous SNV ENSMUST00000094913:c.G198A:p.L66L 2qD NA NA chr2 86818754 TGAxAAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054131 0.054137 0.999892 34 0 0 13.384572 0.625 0.02 -0.070142 3 5 82 133 60 60 0 0 CC 6.871796 23 0 612 0 KEEP - Olfr1100 YES MNNG_2 chr2 87149380 87149380 C T exonic Olfr1118 nonsynonymous SNV NM_207632:c.C433T:p.P145S exonic Olfr1118-ps nonsynonymous SNV uc008knt.1:c.C433T:p.P145S exonic ENSMUSG00000089732 nonsynonymous SNV ENSMUST00000090717:c.C433T:p.P145S 2qD NA NA chr2 87149380 ATTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 129 0 0 31.872421 0.371429 0.02 -0.306923 22 13 632 357 60 60 0 0 CC 23.162838 77 0 2186 0 KEEP + Olfr1118 YES MNNG_2 chr2 88232218 88232218 C T exonic Olfr1178 synonymous SNV NM_001011868:c.C813T:p.L271L exonic Olfr1178 synonymous SNV uc008kpq.1:c.C813T:p.L271L exonic ENSMUSG00000056995 synonymous SNV ENSMUST00000075640:c.C813T:p.L271L 2qD NA NA chr2 88232218 TCTxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 132 1 0 70.663067 0.553191 0.02 -0.412161 21 26 609 723 60 60 0 0 CC 19.253658 64 0 1846 0 KEEP + Olfr1178 YES MNNG_2 chr2 90284677 90284677 C T exonic Ptprj stopgain SNV NM_001135657:c.G3218A:p.W1073X exonic Ptprj stopgain SNV uc008ksu.2:c.G3218A:p.W1073X exonic ENSMUSG00000025314 stopgain SNV ENSMUST00000111493:c.G2939A:p.W980X 2qE1 "Score=0.984747;Name=No.75264,chr2:90013883" NA chr2 90284677 GGCxAGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 68 0 3 32.738228 0.545455 0.02 -0.192927 10 12 289 336 60 60 0 0 CC 11.732326 39 0 1119 0 KEEP - Ptprj YES MNNG_2 chr2 90695606 90695606 G A exonic Mtch2 synonymous SNV NM_019758:c.G441A:p.R147R exonic Mtch2 synonymous SNV uc012bzb.1:c.G60A:p.R20R exonic ENSMUSG00000027282 synonymous SNV ENSMUST00000111467:c.G414A:p.R138R 2qE1 NA NA chr2 90695606 GAGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 108 0 0 52.593287 0.555556 0.02 -0.315652 16 20 445 538 60 60 0 0 GG 15.038717 50 0 1381 0 KEEP + Mtch2 YES MNNG_2 chr2 91144935 91144935 G A exonic 1110051M20Rik synonymous SNV NM_175123:c.C336T:p.F112F exonic 1110051M20Rik synonymous SNV uc008kvu.1:c.C45T:p.F15F exonic ENSMUSG00000040591 synonymous SNV ENSMUST00000094835:c.C45T:p.F15F 2qE1 NA NA chr2 91144935 CGGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 62 0 0 9.372524 0.285714 0.02 -0.122708 10 4 281 111 60 60 0 0 GG 9.316087 31 0 859 0 KEEP - 1110051M20Rik YES MNNG_2 chr2 91521724 91521724 G A exonic Atg13 synonymous SNV NM_145528:c.C915T:p.P305P exonic Atg13 synonymous SNV uc008kwn.1:c.C915T:p.P305P exonic ENSMUSG00000027244 synonymous SNV ENSMUST00000076803:c.C915T:p.P305P 2qE1 NA NA chr2 91521724 TGAxGGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 154 0 0 90.309366 0.492754 0.02 1.180077 35 34 1023 949 60 60 0 0 GG 18.043413 60 0 1674 0 KEEP - Atg13 YES MNNG_2 chr2 92170819 92170819 C T exonic Phf21a nonsynonymous SNV NM_001109690:c.C874T:p.P292S exonic Phf21a nonsynonymous SNV uc008kxj.2:c.C55T:p.P19S exonic ENSMUSG00000058318 nonsynonymous SNV ENSMUST00000159961:c.C535T:p.P179S 2qE1 NA NA chr2 92170819 CACxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 127 5 0 47.374915 0.439024 0.02 -0.385878 23 18 676 510 60 60 0 0 CC 18.338509 61 0 1687 0 KEEP + Phf21a YES MNNG_2 chr3 101914248 101914248 G A splicing Casq2(NM_009814:exon2:c.319+1G>A) NA NA splicing "Casq2(uc008qrr.2:exon2:c.319+1G>A,uc012cuw.1:exon2:c.361+1G>A)" NA NA splicing "ENSMUSG00000027861(ENSMUST00000168096:exon2:c.319+1G>A,ENSMUST00000029454:exon2:c.319+1G>A,ENSMUST00000165540:exon2:c.361+1G>A,ENSMUST00000164123:exon2:c.319+1G>A)" NA NA 3qF2.2 NA NA chr3 101914248 TGGxTAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 68 2 0 22.87331 0.5 0.02 -0.16651 9 9 239 240 60 60 0 0 GG 12.030011 40 0 1090 0 KEEP + Casq2 YES MNNG_2 chr3 102903017 102903017 G A exonic Ampd1 synonymous SNV NM_001033303:c.G2037A:p.E679E exonic Ampd1 synonymous SNV uc008qsp.1:c.G2037A:p.E679E exonic ENSMUSG00000070385 synonymous SNV ENSMUST00000090715:c.G2037A:p.E679E 3qF2.2 NA NA chr3 102903017 TGAxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 84 0 0 43.099158 0.652174 0.02 -0.20168 8 15 225 424 60 60 0 0 GG 14.438768 48 0 1354 0 KEEP + Ampd1 YES MNNG_2 chr3 10344882 10344882 G A exonic Zfand1 synonymous SNV NM_025512:c.C399T:p.G133G exonic Zfand1 synonymous SNV uc008ops.1:c.C399T:p.G133G exonic ENSMUSG00000039795 synonymous SNV ENSMUST00000140634:c.C417T:p.G139G 3qA1 NA NA chr3 10344882 TGCxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 131 0 0 13.651532 0.212121 0.02 -0.288428 26 7 661 177 60 60 0 0 GG 23.117381 77 0 1883 0 KEEP - Zfand1 YES MNNG_2 chr3 104750114 104750114 G A exonic Wnt2b synonymous SNV NM_009520:c.C945T:p.S315S exonic Wnt2b synonymous SNV uc008qut.1:c.C945T:p.S315S exonic ENSMUSG00000027840 synonymous SNV ENSMUST00000029429:c.C945T:p.S315S 3qF2.2 NA NA chr3 104750114 TAGxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 116 1 0 26.531923 0.275 0.02 -0.350806 29 11 847 315 60 60 0 0 GG 18.046662 60 0 1663 0 KEEP - Wnt2b YES MNNG_2 chr3 106017976 106017976 C T intronic Chi3l4 NA NA intronic Chi3l4 NA NA intronic "ENSMUSG00000040809,ENSMUSG00000063779" NA NA 3qF2.2 NA NA chr3 106017976 TTTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 191 2 0 33.4152 0.40625 0.02 -0.289349 19 13 538 366 60 60 0 0 CC 39.395662 131 0 3671 0 KEEP - Chi3l4 YES MNNG_2 chr3 106207240 106207240 G A exonic BC051070 synonymous SNV NM_178412:c.C141T:p.N47N exonic BC051070 synonymous SNV uc008qvy.1:c.C141T:p.N47N exonic ENSMUSG00000027902 synonymous SNV ENSMUST00000029510:c.C141T:p.N47N 3qF2.3 NA NA chr3 106207240 CCAxTTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 53 2 0 6.379701 0.1875 0.02 -0.140313 13 3 373 83 60 60 0 0 GG 8.421773 28 0 776 0 KEEP - BC051070 YES MNNG_2 chr3 107734574 107734574 G A UTR5 Gstm7 NA NA UTR5 Gstm7 NA NA UTR5 ENSMUSG00000004035 NA NA 3qF2.3 NA NA chr3 107734574 ATGxTGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 145 0 0 53.0156 0.4 0.02 1.213001 33 22 915 586 60 60 0 0 GG 20.751248 69 0 1880 0 KEEP - Gstm7 YES MNNG_2 chr3 107782710 107782710 G A intergenic "Gstm3(dist=10618),Gstm2(dist=1910)" NA NA intergenic "Gstm3(dist=10634),Gstm2(dist=1910)" NA NA ncRNA_exonic ENSMUSG00000049231 NA NA 3qF2.3 NA NA chr3 107782710 TGGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 227 0 0 45.755557 0.294118 0.02 1.090342 48 20 1348 541 60 60 0 0 GG 39.066169 130 0 3579 0 KEEP NA Gstm3 YES MNNG_2 chr3 108684878 108684878 G A intronic Fndc7 NA NA intronic Fndc7 NA NA intronic ENSMUSG00000045326 NA NA 3qF3 NA NA chr3 108684878 GCAxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 61 0 0 11.230902 0.263158 0.02 -0.166604 14 5 390 136 60 60 0 0 GG 9.011437 30 0 809 0 KEEP - Fndc7 YES MNNG_2 chr3 108778189 108778189 G A UTR3 Fam102b NA NA UTR3 Fam102b NA NA UTR3 ENSMUSG00000040339 NA NA 3qF3 NA NA chr3 108778189 AGGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 185 0 0 39.008259 0.363636 0.02 -0.394542 28 16 795 439 60 60 0 0 GG 30.936829 103 0 2883 0 KEEP - Fam102b YES MNNG_2 chr3 116471693 116471693 G A intronic Agl NA NA intronic Agl NA NA intronic ENSMUSG00000033400 NA NA 3qG1 NA NA chr3 116471693 GCAxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 79 0 0 48.899637 0.68 0.02 -0.227993 8 17 231 476 60 60 0 0 GG 11.424241 38 0 1076 0 KEEP - Agl YES MNNG_2 chr3 121755902 121755902 G A exonic Abca4 nonsynonymous SNV NM_007378:c.G149A:p.S50N exonic Abca4 nonsynonymous SNV uc008rel.1:c.G149A:p.S50N exonic ENSMUSG00000028125 nonsynonymous SNV ENSMUST00000013995:c.G149A:p.S50N 3qG1 NA NA chr3 121755902 ATAxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 76 0 0 21.651473 0.615385 0.02 -0.113989 5 8 140 216 60 60 0 0 GG 13.835737 46 0 1280 0 KEEP + Abca4 YES MNNG_2 chr3 121859351 121859351 G A exonic Abca4 nonsynonymous SNV NM_007378:c.G5405A:p.G1802D exonic Abca4 nonsynonymous SNV uc008rel.1:c.G5405A:p.G1802D exonic ENSMUSG00000028125 nonsynonymous SNV ENSMUST00000013995:c.G5405A:p.G1802D 3qG1 NA NA chr3 121859351 TCGxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 147 0 0 71.984879 0.5625 0.02 -0.420889 21 27 592 734 60 60 0 0 GG 23.760636 79 0 2187 0 KEEP + Abca4 YES MNNG_2 chr3 121873914 121873914 G A exonic Abca4 nonsynonymous SNV NM_007378:c.G6451A:p.G2151S exonic Abca4 nonsynonymous SNV uc008rel.1:c.G6451A:p.G2151S exonic ENSMUSG00000028125 nonsynonymous SNV ENSMUST00000013995:c.G6451A:p.G2151S 3qG1 NA NA chr3 121873914 CTGxGTA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 151 0 0 23.045706 0.232558 0.02 -0.385868 33 10 952 284 60 60 0 0 GG 24.90927 83 0 2243 0 KEEP + Abca4 YES MNNG_2 chr3 123330897 123330897 G A exonic Ndst3 nonsynonymous SNV NM_031186:c.C1204T:p.L402F exonic Ndst3 nonsynonymous SNV uc008rfp.1:c.C1204T:p.L402F exonic ENSMUSG00000027977 nonsynonymous SNV ENSMUST00000029602:c.C1204T:p.L402F 3qG1 NA NA chr3 123330897 TGAxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 103 0 0 16.102185 0.304348 0.02 -0.201661 16 7 452 189 60 60 0 0 GG 21.961171 73 0 2106 0 KEEP - Ndst3 YES MNNG_2 chr3 126067869 126067869 G A exonic Arsj nonsynonymous SNV NM_173451:c.G178A:p.V60I exonic Arsj nonsynonymous SNV uc008rgc.1:c.G178A:p.V60I exonic ENSMUSG00000046561 nonsynonymous SNV ENSMUST00000093976:c.G178A:p.V60I 3qG1 NA NA chr3 126067869 CAAxTTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 33 0 0 17.436301 0.466667 0.02 -0.131522 8 7 225 186 60 60 0 0 GG 4.812442 16 0 445 0 KEEP + Arsj YES MNNG_2 chr3 132993330 132993330 G A intronic Ppa2 NA NA intronic Ppa2 NA NA intronic ENSMUSG00000028013 NA NA 3qG3 NA NA chr3 132993330 TGTxTGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 0.999999 53 0 0 11.521547 0.384615 0.02 -0.113985 8 5 234 129 60 60 0 0 GG 10.829789 36 0 1031 0 KEEP + Ppa2 YES MNNG_2 chr3 134989198 134989198 G A exonic Slc9b2 nonsynonymous SNV NM_178877:c.G854A:p.G285D exonic Nhedc2 nonsynonymous SNV uc012cyb.1:c.G98A:p.G33D exonic ENSMUSG00000037994 nonsynonymous SNV ENSMUST00000051849:c.G854A:p.G285D 3qG3 NA NA chr3 134989198 CTGxCTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161432 0.162467 0.993634 28 0 0 12.444794 0.416667 0.02 -0.113994 7 5 197 136 60 60 0 0 GG 3.6086 12 0 323 0 KEEP + Slc9b2 YES MNNG_2 chr3 135229595 135229595 G A splicing Manba(NM_027288:exon15:c.2157+1G>A) NA NA splicing Manba(uc008rlv.2:exon15:c.2157+1G>A) NA NA splicing ENSMUSG00000028164(ENSMUST00000029814:exon15:c.2157+1G>A) NA NA 3qG3 NA NA chr3 135229595 ACCxTGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 236 6 0 33.031664 0.318182 0.02 -0.38564 30 14 782 383 60 60 0 0 GG 42.023062 140 0 3530 0 KEEP + Manba YES MNNG_2 chr3 14143401 14143401 T C exonic Ralyl synonymous SNV NM_001163329:c.T600C:p.T200T exonic Ralyl synonymous SNV uc008oqf.2:c.T600C:p.T200T exonic ENSMUSG00000039717 synonymous SNV ENSMUST00000081617:c.T819C:p.T273T 3qA1 NA NA chr3 14143401 GACxGAT T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260399 0.260965 0.997832 41 0 0 33.201059 0.75 0.02 -0.140217 4 12 114 314 60 60 0 0 TT 4.812601 16 0 445 0 KEEP + Ralyl NO MNNG_2 chr3 144591643 144591643 G A intronic AI747448 NA NA intronic AI747448 NA NA intronic ENSMUSG00000074195 NA NA 3qH2 "Score=0.901101;Name=No.81920,chr3:144612550" NA chr3 144591643 AGGxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 64 2 2 15.464469 0.461538 0.02 -0.113998 7 6 199 165 60 60 0 0 GG 12.62899 42 0 1186 0 KEEP - AI747448 YES MNNG_2 chr3 144616913 144616913 G A exonic Clca6 synonymous SNV NM_207208:c.C2145T:p.N715N exonic "AI747448,Clca6" synonymous SNV uc012cza.1:c.C1902T:p.N634N exonic ENSMUSG00000068547 synonymous SNV ENSMUST00000075496:c.C1899T:p.N633N 3qH2 "Score=0.901101;Name=No.81920,chr3:144570868" NA chr3 144616913 TGGxTTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 44 1 0 35.774221 0.722222 0.02 -0.157784 5 13 133 342 60 60 0 0 GG 7.517862 25 0 668 0 KEEP - Clca6 YES MNNG_2 chr3 157480174 157480174 G A intergenic "Ptger3(dist=172452),Cth(dist=77038)" NA NA intergenic "Ptger3(dist=172452),Cth(dist=77038)" NA NA intergenic "ENSMUSG00000040016(dist=172452),ENSMUSG00000028179(dist=77038)" NA NA 3qH4 "Score=0.974588;Name=No.82415,chr4:111479595" NA chr3 157480174 CCAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 226 5 2 34.290358 0.288462 0.02 1.239228 37 15 1056 407 60 60 0 0 GG 44.199829 147 0 4107 0 KEEP NA Ptger3 YES MNNG_2 chr3 16103860 16103860 T C exonic Ythdf3 nonsynonymous SNV NM_001145919:c.T170C:p.M57T exonic Ythdf3 nonsynonymous SNV uc008ori.2:c.T170C:p.M57T exonic ENSMUSG00000047213 nonsynonymous SNV ENSMUST00000108345:c.T170C:p.M57T 3qA1 NA NA chr3 16103860 ATAxGCC T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 105 2 0 11.954518 0.222222 0.02 -0.236716 21 6 571 153 60 60 0 0 TT 17.743219 59 0 1594 0 KEEP + Ythdf3 NO MNNG_2 chr3 28453925 28453925 G A intronic Tnik NA NA intronic Tnik NA NA intronic ENSMUSG00000027692 NA NA 3qA3 NA NA chr3 28453925 GGGxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 66 0 0 6.682517 0.230769 0.02 -0.113991 10 3 280 83 60 60 0 0 GG 13.816743 46 0 1280 0 KEEP + Tnik YES MNNG_2 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162465 0.162467 0.999988 43 1 0 6.878516 0.3 0.02 -0.113995 7 3 198 81 60 29 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 YES MNNG_2 chr3 35794609 35794609 A G exonic Dcun1d1 nonsynonymous SNV NM_001205361:c.T713C:p.V238A exonic Dcun1d1 nonsynonymous SNV uc008oyw.1:c.T668C:p.V223A exonic ENSMUSG00000027708 nonsynonymous SNV ENSMUST00000108182:c.T713C:p.V238A 3qB "Score=0.991163;Name=No.37281,chr13:49589716" NA chr3 35794609 AGGxCAG A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 61 0 0 24.287287 0.529412 0.02 -0.149059 8 9 214 251 60 60 0 0 AA 11.729553 39 0 1068 0 KEEP - Dcun1d1 NO MNNG_2 chr3 38354289 38354289 G A intronic Ankrd50 NA NA exonic Ankrd50 synonymous SNV uc008pbc.2:c.C405T:p.C135C exonic ENSMUSG00000044864 synonymous SNV ENSMUST00000094300:c.C81T:p.C27C 3qB NA NA chr3 38354289 CCAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 264 4 0 112.176557 0.424528 0.02 2.452202 61 45 1744 1221 60 60 0 0 GG 36.0662 120 0 3349 0 KEEP - Ankrd50 YES MNNG_2 chr3 38785910 38785910 G A exonic Fat4 nonsynonymous SNV NM_183221:c.G29A:p.G10D exonic Fat4 nonsynonymous SNV uc008pbe.1:c.G29A:p.G10D exonic ENSMUSG00000046743 nonsynonymous SNV ENSMUST00000061260:c.G29A:p.G10D 3qB NA NA chr3 38785910 CTGxCCG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 105 2 0 27.060946 0.26087 0.02 -0.412155 34 12 979 328 60 60 0 0 GG 11.681807 39 0 1046 0 KEEP + Fat4 YES MNNG_2 chr3 38909484 38909484 G A exonic Fat4 nonsynonymous SNV NM_183221:c.G14666A:p.R4889K exonic Fat4 nonsynonymous SNV uc008pbf.1:c.G14666A:p.R4889K exonic ENSMUSG00000046743 nonsynonymous SNV ENSMUST00000061260:c.G14666A:p.R4889K 3qB NA NA chr3 38909484 CCAxACT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 70 0 0 59.730485 0.724138 0.02 -0.253756 8 21 229 572 60 60 0 0 GG 8.422982 28 0 806 0 KEEP + Fat4 YES MNNG_2 chr3 40734121 40734121 G A exonic 3110057O12Rik stopgain SNV NM_026622:c.G672A:p.W224X exonic 3110057O12Rik stopgain SNV uc008pbw.2:c.G165A:p.W55X exonic ENSMUSG00000037818 stopgain SNV ENSMUST00000056214:c.G279A:p.W93X 3qB NA NA chr3 40734121 TTGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 124 0 0 75.715181 0.692308 0.02 -0.359499 12 27 330 733 60 60 0 0 GG 19.812891 66 0 1760 0 KEEP + 3110057O12Rik YES MNNG_2 chr3 54026184 54026184 G A exonic Trpc4 nonsynonymous SNV NM_001253682:c.G448A:p.A150T exonic Trpc4 nonsynonymous SNV uc008pfc.1:c.G448A:p.A150T exonic ENSMUSG00000027748 nonsynonymous SNV ENSMUST00000029311:c.G448A:p.A150T 3qC NA NA chr3 54026184 GCTxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 225 1 0 80.284103 0.652174 0.02 -0.412071 16 30 460 789 60 60 0 0 GG 42.493478 144 1 3972 7 KEEP + Trpc4 YES MNNG_2 chr3 54954605 54954605 G A intronic Ccdc169 NA NA intronic A730037C10Rik NA NA intronic ENSMUSG00000048655 NA NA 3qC NA NA chr3 54954605 GGGxTGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12036 0.120436 0.999366 31 1 0 7.333335 0.272727 0.02 -0.096426 8 3 220 87 60 60 0 0 GG 5.113244 17 0 471 0 KEEP + Ccdc169 YES MNNG_2 chr3 58615874 58615874 G A intergenic "4930593A02Rik(dist=23428),Clrn1(dist=33263)" NA NA intergenic "AK030561(dist=19933),Clrn1(dist=33263)" NA NA intergenic "ENSMUSG00000087019(dist=14621),ENSMUSG00000043850(dist=32076)" NA NA 3qD NA NA chr3 58615874 TGGxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999997 43 0 0 10.184935 0.4 0.02 -0.0877 6 4 176 112 60 60 0 0 GG 9.021915 30 0 842 0 KEEP NA 4930593A02Rik YES MNNG_2 chr3 63577588 63577588 C T exonic Plch1 nonsynonymous SNV NM_001177732:c.G539A:p.R180H exonic Plch1 nonsynonymous SNV uc012cqc.1:c.G29A:p.R10H exonic ENSMUSG00000036834 nonsynonymous SNV ENSMUST00000048134:c.G476A:p.R159H 3qE1 NA NA chr3 63577588 CTGxGGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 74 0 0 36.679727 0.722222 0.02 -0.157806 5 13 130 351 60 60 0 0 CC 15.33379 51 0 1348 0 KEEP - Plch1 YES MNNG_2 chr3 65198322 65198322 G A intergenic "Ssr3(dist=1847),4931440P22Rik(dist=133085)" NA NA intergenic "Ssr3(dist=1847),AK161073(dist=112857)" NA NA ncRNA_exonic ENSMUSG00000048916 NA NA 3qE1 NA NA chr3 65198322 ATGxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 132 0 0 22.432711 0.25641 0.02 -0.341905 29 10 809 273 60 60 0 0 GG 23.760384 79 0 2192 0 KEEP NA Ssr3 YES MNNG_2 chr3 65333374 65333374 G A intronic Tiparp NA NA intronic Tiparp NA NA intronic ENSMUSG00000034640 NA NA 3qE1 NA NA chr3 65333374 CGGxCGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 294 6 0 62.702275 0.337349 0.02 0.869826 55 28 1567 724 60 60 0 0 GG 48.677976 162 0 4377 0 KEEP + Tiparp YES MNNG_2 chr3 79454596 79454596 G A exonic Rxfp1 nonsynonymous SNV NM_212452:c.C1496T:p.S499F exonic Rxfp1 nonsynonymous SNV uc008pnv.1:c.C1496T:p.S499F exonic ENSMUSG00000034009 nonsynonymous SNV ENSMUST00000078527:c.C1496T:p.S499F 3qE3 NA NA chr3 79454596 ACGxATA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999998 48 0 0 14.190001 0.625 0.02 -0.0701 3 5 74 141 60 60 0 0 GG 9.926956 33 0 941 0 KEEP - Rxfp1 YES MNNG_2 chr3 80945465 80945465 T A exonic Pdgfc nonsynonymous SNV NM_019971:c.T257A:p.I86N exonic Pdgfc nonsynonymous SNV uc008poj.1:c.T257A:p.I86N exonic ENSMUSG00000028019 nonsynonymous SNV ENSMUST00000029652:c.T257A:p.I86N 3qE3 NA NA chr3 80945465 GGAxCCA T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999998 49 0 0 18.396956 0.583333 0.02 -0.105213 5 7 137 186 60 60 0 0 TT 10.225935 34 0 934 0 KEEP + Pdgfc NO MNNG_2 chr3 82847223 82847223 C T exonic Fgb nonsynonymous SNV NM_181849:c.G1145A:p.G382E exonic Fgb nonsynonymous SNV uc008pph.1:c.G1145A:p.G382E exonic ENSMUSG00000033831 nonsynonymous SNV ENSMUST00000048246:c.G1145A:p.G382E 3qE3 NA NA chr3 82847223 TCCxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 182 4 0 79.331209 0.591837 0.02 -0.438415 20 29 577 799 60 60 0 0 CC 30.667792 102 0 2803 0 KEEP - Fgb YES MNNG_2 chr3 86889096 86889096 C T exonic Kirrel nonsynonymous SNV NM_001170985:c.G1583A:p.G528D exonic Kirrel nonsynonymous SNV uc008pru.2:c.G1583A:p.G528D exonic ENSMUSG00000041734 nonsynonymous SNV ENSMUST00000041732:c.G1583A:p.G528D 3qF1 NA NA chr3 86889096 ATGxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 85 1 0 56.955683 0.714286 0.02 -0.254289 8 20 234 547 60 60 0 0 CC 13.234635 44 0 1231 0 KEEP - Kirrel YES MNNG_2 chr3 87531950 87531950 G A exonic Arhgef11 synonymous SNV NM_001003912:c.G2730A:p.Q910Q exonic Arhgef11 synonymous SNV uc012cri.1:c.G780A:p.Q260Q exonic ENSMUSG00000041977 synonymous SNV ENSMUST00000039476:c.G2730A:p.Q910Q 3qF1 NA NA chr3 87531950 GCAxCGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 154 0 0 68.39513 0.353659 0.02 0.976246 53 29 1511 777 60 60 0 0 GG 15.941835 53 0 1479 0 KEEP + Arhgef11 YES MNNG_2 chr3 87800076 87800076 G A exonic Bcan nonsynonymous SNV NM_001109758:c.C730T:p.L244F exonic Bcan nonsynonymous SNV uc008pto.2:c.C730T:p.L244F exonic ENSMUSG00000004892 nonsynonymous SNV ENSMUST00000090971:c.C730T:p.L244F 3qF1 NA NA chr3 87800076 AGAxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 75 1 0 35.028938 0.590909 0.02 -0.192891 9 13 266 353 60 60 0 0 GG 11.732518 39 0 1121 0 KEEP - Bcan YES MNNG_2 chr3 87858978 87858978 G A exonic Gpatch4 nonsynonymous SNV NM_001110809:c.G575A:p.G192D exonic Gpatch4 nonsynonymous SNV uc008pts.2:c.G575A:p.G192D exonic ENSMUSG00000028069 nonsynonymous SNV ENSMUST00000029707:c.G575A:p.G192D 3qF1 NA NA chr3 87858978 TGGxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 52 0 0 29.166732 0.55 0.02 -0.184147 9 11 258 299 60 60 0 0 GG 8.702064 29 0 777 0 KEEP + Gpatch4 YES MNNG_2 chr3 87900789 87900789 G A intronic Iqgap3 NA NA intronic Iqgap3 NA NA intronic ENSMUSG00000028068 NA NA 3qF1 NA NA chr3 87900789 ACAxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 87 1 0 64.1369 0.638889 0.02 -0.324466 13 23 386 634 60 60 0 0 GG 11.128459 37 0 1056 0 KEEP + Iqgap3 YES MNNG_2 chr3 88306924 88306924 G A exonic Lmna synonymous SNV NM_001002011:c.C102T:p.D34D exonic Lmna synonymous SNV uc008pvj.2:c.C102T:p.D34D exonic ENSMUSG00000028063 synonymous SNV ENSMUST00000029699:c.C102T:p.D34D 3qF1 NA NA chr3 88306924 CAGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 196 2 0 58.280491 0.342105 0.02 0.931483 50 26 1379 671 60 60 0 0 GG 29.173604 97 0 2656 0 KEEP - Lmna YES MNNG_2 chr3 88620647 88620647 G A ncRNA_exonic 5830417I10Rik NA NA exonic Gon4l nonsynonymous SNV uc008pwv.2:c.G2552A:p.G851D ncRNA_exonic ENSMUSG00000078684 NA NA 3qF1 "Score=0.981023;Name=No.81678,chr3:88670042" NA chr3 88620647 GTGxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 228 1 6 45.835553 0.253165 0.02 0.984984 59 20 1663 557 60 23 0 0 GG 39.331913 131 0 3609 0 KEEP + 5830417I10Rik YES MNNG_2 chr3 88624685 88624685 G A ncRNA_exonic 5830417I10Rik NA NA exonic Gon4l nonsynonymous SNV uc008pwv.2:c.G4421A:p.G1474D ncRNA_exonic ENSMUSG00000078684 NA NA 3qF1 "Score=0.97502;Name=No.81679,chr3:88618676" NA chr3 88624685 GTGxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 57 0 2 23.986715 0.529412 0.02 -0.157833 8 9 222 248 60 60 0 0 GG 9.323323 31 0 848 0 KEEP + 5830417I10Rik YES MNNG_2 chr3 88867729 88867729 G A exonic Ash1l synonymous SNV NM_138679:c.G7425A:p.K2475K exonic Ash1l synonymous SNV uc008pxj.1:c.G7425A:p.K2475K exonic ENSMUSG00000028053 synonymous SNV ENSMUST00000090933:c.G7425A:p.K2475K 3qF1 NA NA chr3 88867729 GAAxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 104 0 0 19.762824 0.347826 0.02 -0.201703 15 8 433 224 60 60 0 0 GG 18.6436 62 0 1763 0 KEEP + Ash1l YES MNNG_2 chr3 89025535 89025535 G A exonic Thbs3 synonymous SNV NM_013691:c.G1527A:p.G509G exonic Thbs3 synonymous SNV uc008pyg.2:c.G1527A:p.G509G exonic ENSMUSG00000028047 synonymous SNV ENSMUST00000119084:c.G1416A:p.G472G 3qF1 NA NA chr3 89025535 CGGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 66 0 0 34.973077 0.5 0.02 -0.227997 13 13 369 366 60 60 0 0 GG 10.225321 34 0 937 0 KEEP + Thbs3 YES MNNG_2 chr3 89555064 89555064 G A exonic Adar synonymous SNV NM_001038587:c.G2760A:p.K920K exonic Adar synonymous SNV uc008pzy.2:c.G1872A:p.K624K exonic ENSMUSG00000027951 synonymous SNV ENSMUST00000118341:c.G1950A:p.K650K 3qF1 NA NA chr3 89555064 AAAxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16246 0.162467 0.999957 47 0 0 18.940694 0.538462 0.02 -0.114006 6 7 177 195 60 60 0 0 GG 7.821723 26 0 748 0 KEEP + Adar YES MNNG_2 chr3 89716882 89716882 G A exonic Il6ra nonsynonymous SNV NM_010559:c.C80T:p.A27V exonic Il6ra nonsynonymous SNV uc008qaf.1:c.C80T:p.A27V exonic ENSMUSG00000027947 nonsynonymous SNV ENSMUST00000029559:c.C80T:p.A27V 3qF1 NA NA chr3 89716882 AGCxCGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12042 0.120436 0.999869 41 4 0 14.970347 0.545455 0.02 -0.096364 5 6 132 154 60 60 0 0 GG 6.009965 20 0 502 0 KEEP - Il6ra YES MNNG_2 chr3 89799638 89799638 G A intronic Hax1 NA NA intronic Hax1 NA NA intronic ENSMUSG00000027944 NA NA 3qF1 NA NA chr3 89799638 AAGxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 35 0 0 26.005384 0.692308 0.02 -0.114003 4 9 117 252 60 60 0 0 GG 5.715225 19 0 534 0 KEEP - Hax1 YES MNNG_2 chr3 89825299 89825299 G A exonic Ubap2l synonymous SNV NM_001165987:c.C1353T:p.P451P exonic Ubap2l synonymous SNV uc008qar.1:c.C66T:p.P22P exonic ENSMUSG00000042520 synonymous SNV ENSMUST00000080538:c.C1353T:p.P451P 3qF1 NA NA chr3 89825299 CGGxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522098 0.522161 0.999879 54 0 0 36.060325 0.565217 0.02 -0.210465 10 13 286 367 60 60 0 0 GG 6.614516 22 0 596 0 KEEP - Ubap2l YES MNNG_2 chr3 89865741 89865741 G A exonic 4933434E20Rik nonsynonymous SNV NM_025762:c.G748A:p.E250K exonic 4933434E20Rik nonsynonymous SNV uc012csq.1:c.G367A:p.E123K exonic ENSMUSG00000027942 nonsynonymous SNV ENSMUST00000171025:c.G367A:p.E123K 3qF1 NA NA chr3 89865741 CTGxAGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 84 0 0 36.323331 0.56 0.02 -0.219178 11 14 311 371 60 60 0 0 GG 15.641308 52 0 1469 0 KEEP + 4933434E20Rik YES MNNG_2 chr3 90082003 90082003 G A exonic Dennd4b synonymous SNV NM_201407:c.G3744A:p.R1248R exonic Dennd4b synonymous SNV uc008qbz.1:c.G3366A:p.R1122R exonic ENSMUSG00000042404 synonymous SNV ENSMUST00000090888:c.G2931A:p.R977R 3qF1 NA NA chr3 90082003 GAGxTTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 215 2 0 59.463205 0.27 0.02 0.720919 73 27 2035 719 60 60 0 0 GG 27.039639 90 0 2418 0 KEEP + Dennd4b YES MNNG_2 chr3 90190197 90190197 G A exonic Slc27a3 nonsynonymous SNV NM_011988:c.C1802T:p.A601V exonic Slc27a3 nonsynonymous SNV uc008qcc.2:c.C1802T:p.A601V exonic ENSMUSG00000027932 nonsynonymous SNV ENSMUST00000029541:c.C1802T:p.A601V 3qF1 NA NA chr3 90190197 CGGxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 171 0 0 58.09735 0.337662 0.02 1.011712 51 26 1458 671 60 60 0 0 GG 22.248078 74 0 2001 0 KEEP - Slc27a3 YES MNNG_2 chr3 90418167 90418167 G A exonic S100a6 nonsynonymous SNV NM_011313:c.G193A:p.D65N exonic S100a6 nonsynonymous SNV uc008qdb.1:c.G193A:p.D65N exonic ENSMUSG00000001025 nonsynonymous SNV ENSMUST00000001051:c.G193A:p.D65N 3qF1 NA NA chr3 90418167 AAGxATC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 120 0 0 10.570214 0.185185 0.02 -0.245504 22 5 631 138 60 60 0 0 GG 24.320283 81 0 2277 0 KEEP + S100a6 YES MNNG_2 chr3 93962098 93962098 C T intergenic "Gm10697(dist=85532),Gm10696(dist=16236)" NA NA intergenic "Tdpoz5(dist=85532),Gm10696(dist=16236)" NA NA intergenic "ENSMUSG00000074425(dist=85532),ENSMUSG00000089826(dist=14904)" NA NA 3qF2.1 "Score=0.980292;Name=No.81828,chr3:93763136" NA chr3 93962098 CTCxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 174 3 5 79.244191 0.710526 0.02 -0.341991 11 27 308 763 60 60 0 0 CC 32.17541 107 0 2965 0 KEEP NA Gm10697 YES MNNG_2 chr3 94322933 94322933 G A intronic Snx27 NA NA intronic Snx27 NA NA intronic ENSMUSG00000028136 NA NA 3qF2.1 NA NA chr3 94322933 AAAxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 70 0 0 6.782215 0.230769 0.02 -0.114012 10 3 294 84 60 60 0 0 GG 12.621923 42 0 1175 0 KEEP - Snx27 YES MNNG_2 chr3 95046676 95046676 G A exonic Bnipl nonsynonymous SNV NM_001168356:c.C784T:p.H262Y exonic Bnipl nonsynonymous SNV uc008qiy.2:c.C784T:p.H262Y exonic ENSMUSG00000028115 nonsynonymous SNV ENSMUST00000098871:c.C784T:p.H262Y 3qF2.1 NA NA chr3 95046676 TGTxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 173 0 0 69.424228 0.65 0.02 -0.350582 14 26 407 683 60 60 0 0 GG 29.836401 103 1 2921 10 KEEP - Bnipl YES MNNG_2 chr3 95483584 95483584 G A exonic Adamtsl4 nonsynonymous SNV NM_144899:c.C2378T:p.P793L exonic Adamtsl4 nonsynonymous SNV uc008qkm.1:c.C2378T:p.P793L exonic ENSMUSG00000015850 nonsynonymous SNV ENSMUST00000015994:c.C2378T:p.P793L 3qF2.1 NA NA chr3 95483584 GGCxGCG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 133 0 0 83.07712 0.659091 0.02 -0.385708 15 29 376 815 60 60 0 0 GG 21.926634 73 0 1787 0 KEEP - Adamtsl4 YES MNNG_2 chr3 95484121 95484121 G A intronic Adamtsl4 NA NA intronic Adamtsl4 NA NA intronic ENSMUSG00000015850 NA NA 3qF2.1 NA NA chr3 95484121 GCTxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.738068 0.739671 0.997832 51 0 0 49.867938 0.59375 0.02 -0.280536 13 19 348 502 60 60 0 0 GG 4.791669 16 0 414 0 KEEP - Adamtsl4 YES MNNG_2 chr3 95539717 95539717 G A intronic Ecm1 NA NA intronic Ecm1 NA NA intronic ENSMUSG00000028108 NA NA 3qF2.1 NA NA chr3 95539717 GCGxTTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967423 0.967425 0.999998 96 0 0 73.889717 0.54902 0.02 1.33774 23 28 651 758 60 60 0 0 GG 9.864256 33 0 904 0 KEEP - Ecm1 YES MNNG_2 chr3 95974574 95974574 G A intronic Mtmr11 NA NA ncRNA_intronic AK142077 NA NA ncRNA_intronic ENSMUSG00000091244 NA NA 3qF2.1 NA NA chr3 95974574 TGAxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 79 0 0 26.710693 0.34375 0.02 -0.289148 21 11 575 304 60 60 0 0 GG 12.033238 40 0 1147 0 KEEP + Mtmr11 YES MNNG_2 chr3 96470702 96470702 G A intergenic "Itga10(dist=2260),Ankrd35(dist=3352)" NA NA intergenic "Itga10(dist=2260),Ankrd35(dist=3352)" NA NA exonic ENSMUSG00000060899 synonymous SNV ENSMUST00000077278:c.C204T:p.T68T 3qF2.1 NA NA chr3 96470702 CTGxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 449 4 31 112.314458 0.615385 0.02 1.215454 25 40 685 1120 60 60 0 0 GG 98.605536 328 0 9133 0 KEEP NA Itga10 YES MNNG_2 chr3 96488005 96488005 G A exonic Ankrd35 synonymous SNV NM_001081139:c.G1683A:p.Q561Q exonic Ankrd35 synonymous SNV uc008qnr.1:c.G1530A:p.Q510Q exonic ENSMUSG00000038354 synonymous SNV ENSMUST00000048427:c.G1683A:p.Q561Q 3qF2.1 "Score=0.932432;Name=No.62903,chr16:45427170" NA chr3 96488005 CCAxGGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739203 0.739671 0.999366 55 0 0 29.530657 0.375 0.02 -0.280575 20 12 576 330 60 60 0 0 GG 5.112262 17 0 467 0 KEEP + Ankrd35 YES MNNG_2 chr3 97011227 97011227 G A exonic Bcl9 synonymous SNV NM_029933:c.C3003T:p.S1001S exonic Bcl9 synonymous SNV uc008qos.1:c.C3003T:p.S1001S exonic ENSMUSG00000038256 synonymous SNV ENSMUST00000166341:c.C3003T:p.S1001S 3qF2.1 NA NA chr3 97011227 CTGxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 80 0 0 59.363481 0.564103 0.02 -0.341766 17 22 490 605 60 60 0 0 GG 11.405619 38 0 1027 0 KEEP - Bcl9 YES MNNG_2 chr4 102094429 102094429 G A intronic Pde4b NA NA intronic Pde4b NA NA intronic ENSMUSG00000028525 NA NA 4qC6 NA NA chr4 102094429 GTAxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 93 0 0 69.589926 0.666667 0.02 -0.324475 12 24 350 681 60 60 0 0 GG 12.633517 42 0 1178 0 KEEP + Pde4b YES MNNG_2 chr4 103237140 103237140 C T intergenic "Gm12718(dist=72347),Dab1(dist=803025)" NA NA upstream;downstream AK202078;AK209715 NA NA ncRNA_exonic ENSMUSG00000059195 NA NA 4qC6 "Score=0.994048;Name=No.15302,chr11:120207003" NA chr4 103237140 GGAxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019833 0.019982 0.99257 20 0 9 8.452749 0.75 0.02 -0.03507 1 3 27 80 29 29 0 0 CC 4.512383 15 0 429 0 KEEP NA Gm12718 YES MNNG_2 chr4 104464484 104464484 G A exonic C8b nonsynonymous SNV NM_133882:c.G1187A:p.G396D exonic C8b nonsynonymous SNV uc012dhv.1:c.G989A:p.G330D exonic ENSMUSG00000029656 nonsynonymous SNV ENSMUST00000065072:c.G989A:p.G330D 4qC6 NA NA chr4 104464484 TGGxCGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 109 0 0 17.308473 0.368421 0.02 -0.166624 12 7 348 194 60 60 0 0 GG 24.663383 82 0 2272 0 KEEP + C8b YES MNNG_2 chr4 107552531 107552531 G A exonic Magoh synonymous SNV NM_001282737:c.G69A:p.E23E exonic Magoh synonymous SNV uc008uaj.1:c.G69A:p.E23E exonic ENSMUSG00000028609 synonymous SNV ENSMUST00000030348:c.G69A:p.E23E 4qC7 NA NA chr4 107552531 GGAxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 138 1 0 49.423184 0.558824 0.02 -0.298121 15 19 426 505 60 60 0 0 GG 24.653223 82 0 2255 0 KEEP + Magoh YES MNNG_2 chr4 114923729 114923729 C T intronic Cyp4a29-ps NA NA intronic Cyp4a29-ps NA NA ncRNA_intronic ENSMUSG00000083138 NA NA 4qD1 "Score=0.898269;Name=No.86350,chr4:114808145" NA chr4 114923729 CTTxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162447 0.162467 0.999879 38 0 0 25.80553 0.692308 0.02 -0.113999 4 9 114 250 60 60 0 0 CC 6.618066 22 0 626 0 KEEP + Cyp4a29-ps YES MNNG_2 chr4 116313742 116313742 G A exonic Akr1a1 synonymous SNV NM_021473:c.C210T:p.V70V exonic Akr1a4 synonymous SNV uc008uha.1:c.C210T:p.V70V exonic ENSMUSG00000028692 synonymous SNV ENSMUST00000030455:c.C210T:p.V70V 4qD1 NA NA chr4 116313742 AGGxACT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162456 0.162467 0.999931 41 1 0 22.152153 0.615385 0.02 -0.113992 5 8 141 221 60 60 0 0 GG 7.519928 25 0 705 0 KEEP - Akr1a1 YES MNNG_2 chr4 116489692 116489692 G A exonic Mutyh synonymous SNV NM_133250:c.G834A:p.R278R exonic Mutyh synonymous SNV uc008uhn.2:c.G651A:p.R217R exonic ENSMUSG00000028687 synonymous SNV ENSMUST00000084332:c.G651A:p.R217R 4qD1 NA NA chr4 116489692 CCGxGCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 189 3 0 154.557343 0.612903 0.02 0.978521 36 57 1042 1544 60 60 0 0 GG 23.157578 77 0 2145 0 KEEP + Mutyh YES MNNG_2 chr4 116659345 116659345 G A exonic Zswim5 nonsynonymous SNV NM_001029912:c.G2974A:p.D992N exonic Zswim5 nonsynonymous SNV uc008uhq.1:c.G2974A:p.D992N exonic ENSMUSG00000033948 nonsynonymous SNV ENSMUST00000044823:c.G2974A:p.D992N 4qD1 NA NA chr4 116659345 ATTxATG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865667 0.865745 0.999909 66 0 0 69.562769 0.641026 0.02 -0.341957 14 25 391 687 60 60 0 0 GG 7.219435 24 0 680 0 KEEP + Zswim5 YES MNNG_2 chr4 120568578 120568578 C T intergenic "Rims3(dist=4413),Exo5(dist=25229)" NA NA intergenic "Rims3(dist=4413),Dem1(dist=25229)" NA NA UTR3 ENSMUSG00000032890 NA NA 4qD2.2 NA NA chr4 120568578 TCAxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 79 0 0 50.524358 0.558824 0.02 -0.306896 15 19 428 516 60 60 0 0 CC 12.029908 40 0 1102 0 KEEP NA Rims3 YES MNNG_2 chr4 120822969 120822969 C T exonic Rlf nonsynonymous SNV NM_001081013:c.G1418A:p.C473Y exonic Rlf nonsynonymous SNV uc008uoc.1:c.G1100A:p.C367Y exonic ENSMUSG00000049878 nonsynonymous SNV ENSMUST00000168615:c.G1418A:p.C473Y 4qD2.2 NA NA chr4 120822969 GGAxAGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 75 0 0 20.849795 0.615385 0.02 -0.113976 5 8 142 208 60 60 0 0 CC 16.24025 54 0 1498 0 KEEP - Rlf YES MNNG_2 chr4 122971815 122971815 G A exonic Pabpc4 nonsynonymous SNV NM_130881:c.G973A:p.V325M exonic "Gm12612,Pabpc4" nonsynonymous SNV uc008upe.1:c.G307A:p.V103M exonic ENSMUSG00000011257 nonsynonymous SNV ENSMUST00000078734:c.G973A:p.V325M 4qD2.2 NA NA chr4 122971815 TAGxTGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 55 0 0 33.80928 0.75 0.02 -0.140272 4 12 112 320 60 60 0 0 GG 9.624574 32 0 886 0 KEEP + Pabpc4 YES MNNG_2 chr4 124470509 124470509 G A exonic Inpp5b synonymous SNV NM_008385:c.G2283A:p.L761L exonic Inpp5b synonymous SNV uc008uqz.1:c.G1530A:p.L510L exonic ENSMUSG00000028894 synonymous SNV ENSMUST00000071763:c.G1530A:p.L510L 4qD2.2 NA NA chr4 124470509 TCTxGTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 62 0 0 43.502731 0.615385 0.02 -0.227977 10 16 287 434 60 60 0 0 GG 9.625806 32 0 906 0 KEEP + Inpp5b YES MNNG_2 chr4 126698678 126698678 C T exonic Sfpq synonymous SNV NM_023603:c.C18T:p.F6F exonic Sfpq synonymous SNV uc008utz.2:c.C18T:p.F6F exonic ENSMUSG00000028820 synonymous SNV ENSMUST00000030623:c.C18T:p.F6F 4qD2.2 NA NA chr4 126698678 GTTxCGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053793 0.054137 0.993634 29 0 0 20.825681 0.875 0.02 -0.070142 1 7 29 188 60 60 0 0 CC 3.602253 12 0 313 0 KEEP + Sfpq YES MNNG_2 chr4 127003978 127003978 C T exonic Gjb3 nonsynonymous SNV NM_001160012:c.G4A:p.D2N exonic Gjb3 nonsynonymous SNV uc008uus.2:c.G4A:p.D2N exonic ENSMUSG00000042367 nonsynonymous SNV ENSMUST00000046532:c.G4A:p.D2N 4qD2.2 NA NA chr4 127003978 AGTxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 40 0 0 8.330776 0.266667 0.02 -0.1315 11 4 316 102 60 60 0 0 CC 5.414181 18 0 505 0 KEEP - Gjb3 YES MNNG_2 chr4 129393377 129393377 G A exonic Khdrbs1 nonsynonymous SNV NM_011317:c.C1288T:p.P430S exonic Khdrbs1 nonsynonymous SNV uc008uyd.1:c.C1288T:p.P430S exonic ENSMUSG00000028790 nonsynonymous SNV ENSMUST00000066257:c.C1288T:p.P430S 4qD2.2 "Score=0.97281;Name=No.88546,chr8:105058692" NA chr4 129393377 CTGxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999997 50 2 0 27.124793 0.818182 0.02 -0.096462 2 9 58 251 60 60 0 0 GG 9.022652 30 0 833 0 KEEP - Khdrbs1 YES MNNG_2 chr4 132052924 132052924 G A exonic Sesn2 synonymous SNV NM_144907:c.C1087T:p.L363L exonic Sesn2 synonymous SNV uc008vbj.1:c.C1087T:p.L363L exonic ENSMUSG00000028893 synonymous SNV ENSMUST00000030724:c.C1087T:p.L363L 4qD2.3 NA NA chr4 132052924 CCAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.664773 0.668523 0.994391 46 0 0 54.923477 0.689655 0.02 -0.254211 9 20 251 532 60 60 0 0 GG 3.908908 13 0 350 0 KEEP - Sesn2 YES MNNG_2 chr4 132553179 132553179 G A exonic Fgr nonsynonymous SNV NM_010208:c.G790A:p.D264N exonic Fgr nonsynonymous SNV uc012dmj.1:c.G790A:p.D264N exonic ENSMUSG00000028874 nonsynonymous SNV ENSMUST00000030693:c.G790A:p.D264N 4qD2.3 NA NA chr4 132553179 GGAxATG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 180 1 0 175.835961 0.677419 0.02 0.854931 30 63 844 1711 60 60 0 1 GG 19.25238 64 0 1823 0 KEEP + Fgr YES MNNG_2 chr4 133680710 133680710 G A intronic Ubxn11 NA NA intronic Ubxn11 NA NA intronic ENSMUSG00000012126 NA NA 4qD3 NA NA chr4 133680710 AGAxTTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 97 2 0 80.33814 0.7 0.02 -0.350739 12 28 337 776 60 60 0 0 GG 13.534814 45 0 1264 0 KEEP + Ubxn11 YES MNNG_2 chr4 133788917 133788917 G A exonic Cnksr1 nonsynonymous SNV NM_001081047:c.C962T:p.A321V exonic Cnksr1 nonsynonymous SNV uc008vei.1:c.C962T:p.A321V exonic ENSMUSG00000028841 nonsynonymous SNV ENSMUST00000030645:c.C962T:p.A321V 4qD3 NA NA chr4 133788917 CAAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.99986 55 1 0 58.265427 0.65625 0.02 -0.289359 11 21 326 572 70 60 0 0 GG 5.703473 19 0 523 0 KEEP - Cnksr1 YES MNNG_2 chr4 135824039 135824039 G A exonic Tcea3 synonymous SNV NM_011542:c.G777A:p.G259G exonic Tcea3 synonymous SNV uc008vhv.2:c.G777A:p.G259G exonic ENSMUSG00000001604 synonymous SNV ENSMUST00000102533:c.G777A:p.G259G 4qD3 NA NA chr4 135824039 TGGxGCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 77 0 0 22.199236 0.5 0.02 -0.140318 8 8 229 232 60 60 0 0 GG 12.617256 42 0 1152 0 KEEP + Tcea3 YES MNNG_2 chr4 135895741 135895741 G A exonic Hnrnpr nonsynonymous SNV NM_001277122:c.G1394A:p.G465D exonic Hnrnpr nonsynonymous SNV uc008via.1:c.G1394A:p.G465D exonic ENSMUSG00000066037 nonsynonymous SNV ENSMUST00000084219:c.G1697A:p.G566D 4qD3 "Score=0.983883;Name=No.2014,chr1:78779072" NA chr4 135895741 GGGxCAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 52 0 5 20.455455 0.571429 0.02 -0.122674 6 8 167 208 60 60 0 0 GG 8.720884 29 0 794 0 KEEP + Hnrnpr YES MNNG_2 chr4 137106267 137106267 G A exonic Hspg2 nonsynonymous SNV NM_008305:c.G8761A:p.A2921T exonic Hspg2 nonsynonymous SNV uc008vjf.2:c.G868A:p.A290T exonic ENSMUSG00000028763 nonsynonymous SNV ENSMUST00000097839:c.G6736A:p.A2246T 4qD3 NA NA chr4 137106267 CTGxCCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 224 3 0 71.32755 0.357143 0.02 0.949989 54 30 1528 808 60 60 0 0 GG 27.369441 91 0 2512 0 KEEP + Hspg2 YES MNNG_2 chr4 137733855 137733855 G A exonic Eif4g3 synonymous SNV NM_001256195:c.G3201A:p.Q1067Q exonic Eif4g3 synonymous SNV uc008vkd.1:c.G2433A:p.Q811Q exonic ENSMUSG00000028760 synonymous SNV ENSMUST00000140796:c.G1506A:p.Q502Q 4qD3 NA NA chr4 137733855 TCAxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.422559 0.423478 0.997832 46 0 0 25.856079 0.47619 0.02 -0.184158 11 10 326 274 60 60 0 0 GG 4.797716 16 0 441 0 KEEP + Eif4g3 YES MNNG_2 chr4 138996738 138996738 G A splicing Ubr4(NM_001160319:exon57:c.8479+1G>A) NA NA splicing "Ubr4(uc008vmm.2:exon57:c.8479+1G>A,uc008vmk.2:exon31:c.4603+1G>A)" NA NA splicing "ENSMUSG00000066036(ENSMUST00000165860:exon58:c.8512+1G>A,ENSMUST00000064355:exon58:c.8563+1G>A,ENSMUST00000097822:exon57:c.8479+1G>A,ENSMUST00000129949:exon31:c.4647+1G>A)" NA NA 4qD3 NA NA chr4 138996738 AAGxTAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 53 0 0 59.268088 0.75 0.02 -0.245495 7 21 195 561 60 60 0 0 GG 5.959668 20 0 505 0 KEEP + Ubr4 YES MNNG_2 chr4 140571149 140571149 G A exonic Mfap2 nonsynonymous SNV NM_001161799:c.G400A:p.V134I exonic Mfap2 nonsynonymous SNV uc008vnp.2:c.G400A:p.V134I exonic ENSMUSG00000060572 nonsynonymous SNV ENSMUST00000071977:c.G400A:p.V134I 4qD3 NA NA chr4 140571149 GTGxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 142 4 0 84.654287 0.62 0.02 -0.438311 19 31 516 843 60 60 0 0 GG 19.800662 70 1 1935 11 KEEP + Mfap2 YES MNNG_2 chr4 141302934 141302934 G A exonic Agmat synonymous SNV NM_001081408:c.G210A:p.L70L exonic Agmat synonymous SNV uc008vpe.1:c.G210A:p.L70L exonic ENSMUSG00000040706 synonymous SNV ENSMUST00000038161:c.G210A:p.L70L 4qE1 NA NA chr4 141302934 CCTxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 114 0 0 110.450086 0.630769 0.02 1.027431 24 41 683 1095 60 60 0 0 GG 11.428417 38 0 1057 0 KEEP + Agmat YES MNNG_2 chr4 143995969 143995969 C T intronic Pramef12 NA NA intronic Pramef12 NA NA ncRNA_exonic ENSMUSG00000028590 NA NA 4qE1 NA NA chr4 143995969 ACTxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 77 0 0 21.958066 0.321429 0.02 -0.254324 19 9 549 253 60 60 0 0 CC 12.033123 40 0 1144 0 KEEP - Pramef12 YES MNNG_2 chr4 144878315 144878315 G A intronic Tnfrsf8 NA NA intronic Tnfrsf8 NA NA intronic ENSMUSG00000028602 NA NA 4qE1 NA NA chr4 144878315 GGGxGAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.289823 0.292001 0.99254 29 0 0 6.580282 0.1875 0.02 -0.149018 13 3 366 85 60 60 0 0 GG 2.70719 9 0 252 0 KEEP - Tnfrsf8 YES MNNG_2 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.640941 0.641347 0.999366 57 0 0 52.718557 0.678571 0.02 -0.245526 9 19 266 513 60 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 YES MNNG_2 chr4 147284878 147284878 G T exonic Plod1 nonsynonymous SNV NM_011122:c.C2137A:p.P713T exonic Plod1 nonsynonymous SNV uc008vtk.2:c.C2137A:p.P713T exonic ENSMUSG00000019055 nonsynonymous SNV ENSMUST00000019199:c.C2137A:p.P713T 4qE2 NA NA chr4 147284878 TAGxAAG G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 111 0 0 37.735618 0.4 0.02 -0.359493 24 16 700 418 60 60 0 0 GG 16.839647 56 0 1560 0 KEEP - Plod1 NO MNNG_2 chr4 147415768 147415768 C A exonic Mthfr synonymous SNV NM_001161798:c.C186A:p.G62G exonic Mthfr synonymous SNV uc008vtw.1:c.C63A:p.G21G exonic ENSMUSG00000029009 synonymous SNV ENSMUST00000069604:c.C186A:p.G62G 4qE2 "Score=0.980769;Name=No.87274,chr5:78902899" NA chr4 147415768 TGGxAGC C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 123 4 2 7.892837 0.090909 0.02 -0.403379 40 4 1140 118 60 29 0 0 CC 13.886702 56 1 1532 27 KEEP + Mthfr NO MNNG_2 chr4 147520036 147520036 G A exonic Fbxo6 synonymous SNV NM_001163704:c.C877T:p.L293L exonic Fbxo6 synonymous SNV uc008vud.2:c.C877T:p.L293L exonic ENSMUSG00000055401 synonymous SNV ENSMUST00000030858:c.C877T:p.L293L 4qE2 NA NA chr4 147520036 TTAxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 148 3 0 122.4616 0.763636 0.02 1.212979 13 42 367 1155 60 60 0 0 GG 19.252402 64 0 1823 0 KEEP - Fbxo6 YES MNNG_2 chr4 148303525 148303525 G A exonic Casz1 nonsynonymous SNV NM_001159344:c.G436A:p.E146K exonic Casz1 nonsynonymous SNV uc008vvl.1:c.G436A:p.E146K exonic ENSMUSG00000028977 nonsynonymous SNV ENSMUST00000060495:c.G436A:p.E146K 4qE2 NA NA chr4 148303525 CTGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780965 0.78106 0.999879 63 0 0 43.763943 0.5 0.02 -0.298086 17 17 491 459 60 60 0 0 GG 6.618139 22 0 628 0 KEEP + Casz1 YES MNNG_2 chr4 149281187 149281187 G A exonic Spsb1 nonsynonymous SNV NM_029035:c.C32T:p.T11I exonic Spsb1 nonsynonymous SNV uc008vxf.1:c.C32T:p.T11I exonic ENSMUSG00000039911 nonsynonymous SNV ENSMUST00000105684:c.C32T:p.T11I 4qE2 NA NA chr4 149281187 ACAxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 166 0 0 45.477957 0.327869 0.02 1.134139 41 20 1155 527 60 60 0 0 GG 19.606437 69 1 1906 10 KEEP - Spsb1 YES MNNG_2 chr4 151769192 151769192 G A intronic Kcnab2 NA NA intronic Kcnab2 NA NA intronic ENSMUSG00000028931 NA NA 4qE2 NA NA chr4 151769192 AGGxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 110 0 0 109.23691 0.644068 0.02 1.276145 21 38 604 1078 60 60 0 0 GG 14.737598 49 0 1357 0 KEEP - Kcnab2 YES MNNG_2 chr4 152760606 152760606 C T exonic Ajap1 synonymous SNV NM_001099299:c.G852A:p.Q284Q exonic Ajap1 synonymous SNV uc008was.1:c.G852A:p.Q284Q exonic ENSMUSG00000039546 nonsynonymous SNV ENSMUST00000149177:c.G46A:p.D16N 4qE2 NA NA chr4 152760606 GATxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 63 0 0 36.736946 0.619048 0.02 -0.18417 8 13 240 366 60 60 0 0 CC 9.326218 31 0 899 0 KEEP - Ajap1 YES MNNG_2 chr4 153641558 153641558 G A exonic Megf6 stopgain SNV NM_001162977:c.G3504A:p.W1168X exonic Megf6 stopgain SNV uc008wbq.2:c.G426A:p.W142X exonic ENSMUSG00000057751 stopgain SNV ENSMUST00000152159:c.G2793A:p.W931X 4qE2 NA NA chr4 153641558 CTGxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 145 0 0 96.810088 0.686275 0.02 1.239379 16 35 439 939 60 60 0 0 GG 20.449925 68 0 1851 0 KEEP + Megf6 YES MNNG_2 chr4 153902889 153902889 C T exonic Prdm16 synonymous SNV NM_001177995:c.G189A:p.K63K exonic Prdm16 synonymous SNV uc008wbu.1:c.G189A:p.K63K exonic ENSMUSG00000039410 synonymous SNV ENSMUST00000030902:c.G189A:p.K63K 4qE2 NA NA chr4 153902889 CTCxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 71 2 0 26.287437 0.366667 0.02 -0.271613 19 11 535 296 60 60 0 0 CC 9.32537 31 0 882 0 KEEP - Prdm16 YES MNNG_2 chr4 155279496 155279496 G A intronic Acap3 NA NA intronic Acap3 NA NA intronic ENSMUSG00000029033 NA NA 4qE2 NA NA chr4 155279496 TCAxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 73 0 0 36.85785 0.518519 0.02 -0.236708 13 14 361 383 60 60 0 0 GG 12.633283 42 0 1181 0 KEEP + Acap3 YES MNNG_2 chr4 155429871 155429871 G T upstream "Mir200a,Mir200b" NA NA intronic Ttll10 NA NA ncRNA_intronic ENSMUSG00000086549 NA NA 4qE2 NA NA chr4 155429871 TTGxATA G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161282 0.162467 0.992708 29 0 0 11.722224 0.384615 0.02 -0.113997 8 5 235 131 60 60 0 0 GG 3.000932 10 0 271 0 KEEP - Mir200a NO MNNG_2 chr4 155553428 155553428 G A exonic Agrn nonsynonymous SNV NM_021604:c.C737T:p.S246F exonic Agrn nonsynonymous SNV uc008wgf.1:c.C233T:p.S78F exonic ENSMUSG00000041936 nonsynonymous SNV ENSMUST00000075787:c.C233T:p.S78F 4qE2 NA NA chr4 155553428 CGGxACC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.691234 0.693668 0.99649 50 0 0 62.519377 0.733333 0.02 -0.26297 8 22 225 596 60 60 0 0 GG 4.449555 15 0 393 0 KEEP - Agrn YES MNNG_2 chr4 155605941 155605941 G A exonic Klhl17 nonsynonymous SNV NM_198305:c.C1151T:p.A384V exonic Klhl17 nonsynonymous SNV uc012drm.1:c.C35T:p.A12V exonic ENSMUSG00000078484 nonsynonymous SNV ENSMUST00000105569:c.C1151T:p.A384V 4qE2 NA NA chr4 155605941 ACGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 80 0 0 53.620213 0.678571 0.02 -0.245533 9 19 261 522 60 60 0 0 GG 14.136184 47 0 1294 0 KEEP - Klhl17 YES MNNG_2 chr4 18020520 18020520 G A exonic Mmp16 nonsynonymous SNV NM_019724:c.G1127A:p.G376E exonic Mmp16 nonsynonymous SNV uc008sbw.2:c.G1127A:p.G376E exonic ENSMUSG00000028226 nonsynonymous SNV ENSMUST00000029881:c.G1127A:p.G376E 4qA3 NA NA chr4 18020520 ATGxATA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 70 0 0 31.150231 0.647059 0.02 -0.149085 6 11 179 307 60 60 0 0 GG 12.333629 41 0 1168 0 KEEP + Mmp16 YES MNNG_2 chr4 24576728 24576728 C T exonic Klhl32 nonsynonymous SNV NM_001033531:c.G1214A:p.C405Y exonic Klhl32 nonsynonymous SNV uc008seb.1:c.G608A:p.C203Y exonic ENSMUSG00000040387 nonsynonymous SNV ENSMUST00000084781:c.G1214A:p.C405Y 4qA3 NA NA chr4 24576728 TGAxACG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 35 0 0 16.101424 0.538462 0.02 -0.122294 6 7 157 167 60 60 0 0 CC 5.714122 19 0 517 0 KEEP - Klhl32 YES MNNG_2 chr4 25205235 25205235 C T exonic Ufl1 synonymous SNV NM_026194:c.G366A:p.Q122Q exonic "1810074P20Rik,Ufl1" synonymous SNV uc012dbb.1:c.G126A:p.Q42Q exonic ENSMUSG00000040359 synonymous SNV ENSMUST00000038705:c.G126A:p.Q42Q 4qA3 NA NA chr4 25205235 TAAxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 92 0 0 9.231193 0.266667 0.02 -0.140313 11 4 318 111 60 60 0 0 CC 19.250847 64 0 1793 0 KEEP - Ufl1 YES MNNG_2 chr4 32761865 32761865 G A intronic Mdn1 NA NA intronic Mdn1 NA NA intronic ENSMUSG00000058006 NA NA 4qA5 NA NA chr4 32761865 CTTxCCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 55 4 0 21.150041 0.615385 0.02 -0.113984 5 8 145 211 60 60 0 0 GG 11.130658 37 0 1060 0 KEEP + Mdn1 YES MNNG_2 chr4 32800243 32800243 G A exonic Mdn1 nonsynonymous SNV NM_001081392:c.G5677A:p.V1893I exonic Mdn1 nonsynonymous SNV uc008sfa.1:c.G5677A:p.V1893I exonic ENSMUSG00000058006 nonsynonymous SNV ENSMUST00000071642:c.G5677A:p.V1893I 4qA5 NA NA chr4 32800243 ACAxTAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 64 0 0 11.520226 0.8 0.02 -0.043834 1 4 25 107 60 60 0 0 GG 12.033033 40 0 1145 0 KEEP + Mdn1 YES MNNG_2 chr4 41260351 41260351 G A exonic Dcaf12 nonsynonymous SNV NM_026893:c.C226T:p.P76S exonic Dcaf12 nonsynonymous SNV uc008sil.2:c.C226T:p.P76S exonic ENSMUSG00000028436 nonsynonymous SNV ENSMUST00000030145:c.C226T:p.P76S 4qA5 NA NA chr4 41260351 TGGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 63 0 0 27.769922 0.625 0.02 -0.140307 6 10 174 276 60 60 0 0 GG 11.430913 38 0 1076 0 KEEP - Dcaf12 YES MNNG_2 chr4 43006583 43006583 C A exonic Vcp synonymous SNV NM_009503:c.G420T:p.L140L exonic Vcp synonymous SNV uc008sor.2:c.G420T:p.L140L exonic ENSMUSG00000028452 synonymous SNV ENSMUST00000030164:c.G420T:p.L140L 4qA5 NA NA chr4 43006583 TTCxAGG C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 169 4 4 21.684037 0.243902 0.02 -0.36815 31 10 868 268 60 60 0 0 CC 27.975725 93 0 2651 0 KEEP - Vcp NO MNNG_2 chr4 43046411 43046411 G A exonic Fam214b nonsynonymous SNV NM_001253353:c.C1613T:p.P538L exonic B230312A22Rik nonsynonymous SNV uc008spa.1:c.C1613T:p.P538L exonic ENSMUSG00000036002 nonsynonymous SNV ENSMUST00000107957:c.C1613T:p.P538L 4qA5 NA NA chr4 43046411 CAGxGCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 79 0 0 37.55881 0.482759 0.02 -0.262952 15 14 415 396 60 60 0 0 GG 10.823452 36 0 988 0 KEEP - Fam214b YES MNNG_2 chr4 43229676 43229676 G A intronic Unc13b NA NA intronic Unc13b NA NA intronic ENSMUSG00000028456 NA NA 4qA5 NA NA chr4 43229676 CAGxGCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 39 0 0 24.147417 0.888889 0.02 -0.078908 1 8 29 217 60 60 0 0 GG 8.688183 29 0 786 0 KEEP + Unc13b YES MNNG_2 chr4 45054692 45054692 G A exonic Fbxo10 nonsynonymous SNV NM_001024142:c.C2408T:p.T803I exonic Fbxo10 nonsynonymous SNV uc008ssf.2:c.C2408T:p.T803I exonic ENSMUSG00000048232 nonsynonymous SNV ENSMUST00000052236:c.C2408T:p.T803I 4qB1 NA NA chr4 45054692 TTGxTAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 158 0 0 114.405153 0.694915 0.02 1.178269 18 41 499 1106 60 60 0 0 GG 21.656539 72 0 2003 0 KEEP - Fbxo10 YES MNNG_2 chr4 47319591 47319591 G A exonic Col15a1 nonsynonymous SNV NM_009928:c.G3346A:p.A1116T exonic Col15a1 nonsynonymous SNV uc012ddw.1:c.G3280A:p.A1094T exonic ENSMUSG00000028339 nonsynonymous SNV ENSMUST00000107730:c.G79A:p.A27T 4qB1 NA NA chr4 47319591 ACAxCGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077332 0.077336 0.999957 36 0 0 13.699152 0.555556 0.02 -0.078923 4 5 114 140 60 60 0 0 GG 7.820551 26 0 736 0 KEEP + Col15a1 YES MNNG_2 chr4 53074394 53074394 G A exonic Abca1 synonymous SNV NM_013454:c.C4524T:p.Y1508Y exonic Abca1 synonymous SNV uc008swu.1:c.C4524T:p.Y1508Y exonic ENSMUSG00000015243 synonymous SNV ENSMUST00000030010:c.C4524T:p.Y1508Y 4qB2 NA NA chr4 53074394 CAGxTAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 182 4 0 69.891195 0.694444 0.02 -0.315662 11 25 314 676 60 60 0 0 GG 29.61995 103 1 2821 12 KEEP - Abca1 YES MNNG_2 chr4 62170237 62170237 G A UTR3 Alad NA NA UTR3 Alad NA NA UTR3 ENSMUSG00000028393 NA NA 4qB3 NA NA chr4 62170237 TCTxTAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 146 1 0 18.239362 0.444444 0.02 -0.157748 10 8 288 198 60 60 0 0 GG 30.068583 100 0 2846 0 KEEP - Alad YES MNNG_2 chr4 64968893 64968893 G A exonic Pappa synonymous SNV NM_021362:c.G3948A:p.Q1316Q exonic Pappa synonymous SNV uc008thm.1:c.G3948A:p.Q1316Q exonic ENSMUSG00000028370 synonymous SNV ENSMUST00000084501:c.G3948A:p.Q1316Q 4qC1 NA NA chr4 64968893 CCAxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 144 2 0 64.090671 0.657143 0.02 -0.324446 12 23 341 629 60 60 0 0 GG 24.063244 80 0 2235 0 KEEP + Pappa YES MNNG_2 chr4 80599441 80599441 C T intronic Lurap1l NA NA intronic D4Bwg0951e NA NA intronic ENSMUSG00000048706 NA NA 4qC3 NA NA chr4 80599441 TGTxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099717 0.099721 0.999957 38 0 0 13.373923 0.5 0.02 -0.087697 5 5 145 140 60 60 0 0 CC 7.821347 26 0 743 0 KEEP + Lurap1l YES MNNG_2 chr4 80938469 80938469 A G exonic Mpdz synonymous SNV NM_010820:c.T5040C:p.N1680N exonic Mpdz synonymous SNV uc008tjw.2:c.T4941C:p.N1647N exonic ENSMUSG00000028402 synonymous SNV ENSMUST00000131547:c.T48C:p.N16N 4qC3 NA NA chr4 80938469 GACxTTG A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 92 2 0 41.902906 0.666667 0.02 -0.208998 8 16 190 408 60 60 0 0 AA 18.043748 60 0 1614 0 KEEP - Mpdz NO MNNG_2 chr4 85988956 85988956 G A exonic Adamtsl1 nonsynonymous SNV NM_029967:c.G3523A:p.A1175T exonic Adamtsl1 nonsynonymous SNV uc008tls.3:c.G2077A:p.A693T exonic ENSMUSG00000066113 nonsynonymous SNV ENSMUST00000107178:c.G3523A:p.A1175T 4qC4 NA NA chr4 85988956 CTAxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 83 0 0 29.580238 0.413793 0.02 -0.254302 17 12 492 324 60 60 0 0 GG 12.633282 42 0 1178 0 KEEP + Adamtsl1 YES MNNG_2 chr4 94619026 94619026 G A exonic Mysm1 synonymous SNV NM_177239:c.C1843T:p.L615L exonic Mysm1 synonymous SNV uc008tsn.1:c.C1843T:p.L615L exonic ENSMUSG00000062627 synonymous SNV ENSMUST00000075872:c.C1843T:p.L615L 4qC5 NA NA chr4 94619026 TCAxACT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 61 0 0 31.050364 0.647059 0.02 -0.157851 6 11 175 306 60 60 0 0 GG 10.829753 36 0 1029 0 KEEP - Mysm1 YES MNNG_2 chr4 95290149 95290149 C T intronic Fggy NA NA intronic Fggy NA NA intronic ENSMUSG00000028573 NA NA 4qC5 NA NA chr4 95290149 ATTxTAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09971 0.099721 0.999892 36 0 0 7.178786 0.3 0.02 -0.087686 7 3 195 84 60 60 0 0 CC 6.916876 23 0 643 0 KEEP + Fggy YES MNNG_2 chr4 95961664 95961664 C T exonic Cyp2j11 nonsynonymous SNV NM_001004141:c.G1357A:p.E453K exonic Cyp2j11-ps nonsynonymous SNV uc008tth.2:c.G1357A:p.E453K exonic ENSMUSG00000066097 nonsynonymous SNV ENSMUST00000015368:c.G1357A:p.E453K 4qC5 NA NA chr4 95961664 GTTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 64 0 0 23.414167 0.727273 0.02 -0.096464 3 8 88 224 60 60 0 0 CC 13.235375 44 0 1242 0 KEEP - Cyp2j11 YES MNNG_2 chr4 9771615 9771615 C T UTR5 Gdf6 NA NA UTR5 Gdf6 NA NA UTR5 ENSMUSG00000051279 NA NA 4qA1 NA NA chr4 9771615 CCAxTCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 197 0 0 29.659065 0.302326 0.02 -0.377027 30 13 836 349 60 60 0 0 CC 35.477654 118 0 3229 0 KEEP + Gdf6 YES MNNG_2 chr4 98403668 98403668 G A exonic L1td1 nonsynonymous SNV NM_001081202:c.G1210A:p.V404I exonic L1td1 nonsynonymous SNV uc008tuj.1:c.G1210A:p.V404I exonic ENSMUSG00000087166 nonsynonymous SNV ENSMUST00000173659:c.G1408A:p.V470I 4qC6 "Score=0.906792;Name=No.55186,chr14:13825321" NA chr4 98403668 TTGxTAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019979 0.019982 0.99986 29 1 0 8.553001 0.75 0.02 -0.035072 1 3 27 81 60 60 0 0 GG 5.714016 19 0 515 0 KEEP + L1td1 YES MNNG_2 chr5 104494112 104494112 C T exonic Nudt9 nonsynonymous SNV NM_028794:c.C1031T:p.A344V exonic Nudt9 nonsynonymous SNV uc008yka.1:c.C1031T:p.A344V exonic ENSMUSG00000029310 nonsynonymous SNV ENSMUST00000031250:c.C1031T:p.A344V 5qE5 NA NA chr5 104494112 ACGxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 98 1 0 68.122215 0.625 0.02 -0.350723 15 25 431 677 60 60 0 0 CC 13.234801 44 0 1227 0 KEEP + Nudt9 YES MNNG_2 chr5 105511779 105511779 C T exonic Gbp9 nonsynonymous SNV NM_172777:c.G1297A:p.D433N exonic Gbp9 nonsynonymous SNV uc008ykw.2:c.G1297A:p.D433N exonic ENSMUSG00000029298 nonsynonymous SNV ENSMUST00000031238:c.G1297A:p.D433N 5qE5 "Score=0.922459;Name=No.90935,chr5:105572145" NA chr5 105511779 TGTxCGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 202 2 0 43.95995 0.333333 0.02 1.31997 36 18 1046 503 60 60 0 0 CC 35.487704 118 0 3321 0 KEEP - Gbp9 YES MNNG_2 chr5 107569402 107569402 C T splicing Tgfbr3(NM_011578:exon10:c.1410+1G>A) NA NA splicing Tgfbr3(uc008ylz.2:exon10:c.1410+1G>A) NA NA splicing ENSMUSG00000029287(ENSMUST00000031224:exon10:c.1410+1G>A) NA NA 5qE5 NA NA chr5 107569402 TGAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 97 0 0 39.096545 0.555556 0.02 -0.236701 12 15 318 400 60 60 0 0 CC 17.142978 57 0 1556 0 KEEP - Tgfbr3 YES MNNG_2 chr5 109515127 109515127 C T exonic Vmn2r12 nonsynonymous SNV NM_001104623:c.G2237A:p.G746E exonic Vmn2r12 nonsynonymous SNV uc009vdj.1:c.G2237A:p.G746E exonic ENSMUSG00000090688 nonsynonymous SNV ENSMUST00000095922:c.G2237A:p.G746E 5qF "Score=0.923563;Name=No.90946,chr5:109294468" NA chr5 109515127 TATxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1072 52 87 125.884068 0.230769 0.02 4.598833 190 57 5403 1566 60 60 0 0 CC 181.383108 603 0 17120 0 KEEP - Vmn2r12 YES MNNG_2 chr5 112698321 112698321 C T intronic Crybb1 NA NA intronic Crybb1 NA NA intronic ENSMUSG00000029343 NA NA 5qF NA NA chr5 112698321 TTTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 132 0 0 90.959279 0.566667 0.02 1.062611 26 34 757 926 60 60 0 0 CC 17.441435 58 0 1622 0 KEEP + Crybb1 YES MNNG_2 chr5 114504643 114504643 C T intronic Svop NA NA intronic Svop NA NA intronic ENSMUSG00000042078 NA NA 5qF NA NA chr5 114504643 AGCxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.999859 52 0 0 19.547244 0.307692 0.02 -0.236798 18 8 534 227 60 60 0 0 CC 5.414856 18 0 514 0 KEEP - Svop YES MNNG_2 chr5 117545007 117545007 C T intronic Suds3 NA NA intronic Suds3 NA NA intronic ENSMUSG00000066900 NA NA 5qF NA NA chr5 117545007 CTGxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851925 0.851984 0.999931 69 2 0 43.421036 0.459459 0.02 -0.333206 20 17 569 464 60 60 0 0 CC 7.519894 25 0 699 0 KEEP - Suds3 YES MNNG_2 chr5 125368380 125368380 A C UTR3 Zfp664 NA NA UTR3 Zfp664 NA NA UTR3 ENSMUSG00000079215 NA NA 5qF NA NA chr5 125368380 TGAxGCC A C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 97 0 0 64.40705 0.641026 0.02 -0.367708 14 25 383 636 60 60 0 0 AA 13.200347 44 0 1208 0 KEEP + Zfp664 NO MNNG_2 chr5 12570942 12570942 C T intronic Sema3d NA NA intronic Sema3d NA NA intronic ENSMUSG00000040254 NA NA 5qA1 NA NA chr5 12570942 ATGxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999998 61 0 0 22.079562 0.473684 0.02 -0.175294 10 9 267 235 60 60 0 0 CC 9.923503 33 0 899 0 KEEP + Sema3d YES MNNG_2 chr5 129634105 129634105 G A intronic Gpr133 NA NA intronic Gpr133 NA NA ncRNA_exonic ENSMUSG00000060419 NA NA 5qG1.3 NA NA chr5 129634105 TTGxTAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 110 0 12 80.74493 0.84375 0.02 -0.289359 5 27 139 739 60 60 0 0 GG 15.942097 53 0 1482 0 KEEP + Gpr133 YES MNNG_2 chr5 130065377 130065377 G A intronic Sfswap NA NA exonic Sfswap synonymous SNV uc008zsx.1:c.G954A:p.E318E exonic ENSMUSG00000029439 synonymous SNV ENSMUST00000031394:c.G954A:p.E318E 5qG1.3 NA NA chr5 130065377 GGAxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899205 0.899314 0.999879 69 2 0 35.249507 0.365854 0.02 -0.368143 26 15 771 398 60 60 0 0 GG 6.617957 22 0 625 0 KEEP + Sfswap YES MNNG_2 chr5 137233647 137233647 C T exonic Col26a1 synonymous SNV NM_024474:c.G459A:p.L153L exonic Emid2 synonymous SNV uc009aay.1:c.G459A:p.L153L exonic ENSMUSG00000004415 synonymous SNV ENSMUST00000057497:c.G459A:p.L153L 5qG2 NA NA chr5 137233647 TTCxAGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 384 7 0 334.801589 0.569507 0.02 5.193037 96 127 2738 3405 60 60 0 0 CC 27.961434 93 0 2621 0 KEEP - Col26a1 YES MNNG_2 chr5 138458976 138458976 C T intergenic "Azgp1(dist=27516),Smok3a(dist=3528)" NA NA intergenic "Azgp1(dist=27516),Smok3a(dist=3528)" NA NA intergenic "ENSMUSG00000063739(dist=24324),ENSMUSG00000075599(dist=3528)" NA NA 5qG2 "Score=0.99505;Name=No.91008,chr5:138474620" NA chr5 138458976 CAGxGAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 154 0 0 11.197442 0.115385 0.02 1.239522 46 6 1153 164 60 60 0 0 CC 27.932852 93 0 2232 0 KEEP NA Azgp1 YES MNNG_2 chr5 138607058 138607058 G A intronic Mcm7 NA NA intronic Mcm7 NA NA intronic ENSMUSG00000029730 NA NA 5qG2 NA NA chr5 138607058 GAGxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997484 0.997553 0.999931 104 0 0 51.196534 0.295775 0.02 1.162099 50 21 1446 599 60 60 0 0 GG 7.519509 25 0 696 0 KEEP - Mcm7 YES MNNG_2 chr5 141261484 141261484 A G exonic Gna12 nonsynonymous SNV NM_010302:c.T386C:p.L129P exonic Gna12 nonsynonymous SNV uc009aih.1:c.T386C:p.L129P exonic ENSMUSG00000000149 nonsynonymous SNV ENSMUST00000000153:c.T386C:p.L129P 5qG2 NA NA chr5 141261484 ATCxGAA A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 114 0 0 59.793228 0.421053 0.02 1.293754 33 24 929 652 60 60 0 0 AA 11.128865 37 0 1027 0 KEEP - Gna12 NO MNNG_2 chr5 143004376 143004376 G A exonic Papolb synonymous SNV NM_019943:c.C1465T:p.L489L exonic Papolb synonymous SNV uc009aiw.1:c.C1465T:p.L489L exonic ENSMUSG00000074817 synonymous SNV ENSMUST00000099400:c.C1465T:p.L489L 5qG2 NA NA chr5 143004376 TTAxATG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 53 3 0 22.728501 0.409091 0.02 -0.192928 13 9 374 249 60 60 0 0 GG 7.520987 25 0 721 0 KEEP - Papolb YES MNNG_2 chr5 146924397 146924397 A G exonic Cyp3a59 synonymous SNV NM_001105160:c.A1458G:p.E486E exonic Cyp3a59 synonymous SNV uc012egy.1:c.A1458G:p.E486E exonic ENSMUSG00000061292 synonymous SNV ENSMUST00000035571:c.A1458G:p.E486E 5qG3 "Score=0.948135;Name=No.91048,chr5:146783644" NA chr5 146924397 AGAxAAA A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 384 9 0 16.74594 0.081081 0.02 2.613703 102 9 2838 260 60 60 0 0 AA 61.634076 205 0 5682 0 KEEP + Cyp3a59 NO MNNG_2 chr5 147029561 147029561 C T exonic Rnf6 nonsynonymous SNV NM_001256085:c.G94A:p.E32K exonic Rnf6 nonsynonymous SNV uc009anb.1:c.G94A:p.E32K exonic ENSMUSG00000029634 nonsynonymous SNV ENSMUST00000067837:c.G94A:p.E32K 5qG3 NA NA chr5 147029561 CTTxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 106 0 0 51.009863 0.692308 0.02 -0.227991 8 18 229 494 60 60 0 0 CC 20.747138 69 0 1953 0 KEEP - Rnf6 YES MNNG_2 chr5 18733172 18733172 G A exonic Magi2 synonymous SNV NM_001170746:c.G66A:p.R22R exonic Magi2 synonymous SNV uc012dsm.1:c.G66A:p.R22R exonic ENSMUSG00000040003 synonymous SNV ENSMUST00000088516:c.G66A:p.R22R 5qA3 NA NA chr5 18733172 CAGxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.832783 0.835716 0.99649 56 2 0 20.003934 0.25 0.02 -0.324456 27 9 782 245 60 60 0 0 GG 4.511951 15 0 421 0 KEEP + Magi2 YES MNNG_2 chr5 21030320 21030320 C T exonic Fbxl13 synonymous SNV NM_001199632:c.G1311A:p.V437V exonic Fbxl13 synonymous SNV uc008woq.1:c.G1311A:p.V437V exonic ENSMUSG00000048520 synonymous SNV ENSMUST00000115234:c.G1311A:p.V437V 5qA3 NA NA chr5 21030320 GTGxACA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 159 0 0 38.40258 0.314815 0.02 1.123907 37 17 1034 449 60 60 0 0 CC 21.932891 73 0 2046 0 KEEP - Fbxl13 YES MNNG_2 chr5 23985489 23985489 C T exonic Agap3 nonsynonymous SNV NM_001256431:c.C1007T:p.S336F exonic Agap3 nonsynonymous SNV uc008wru.1:c.C1007T:p.S336F exonic ENSMUSG00000023353 nonsynonymous SNV ENSMUST00000024123:c.C1007T:p.S336F 5qA3 NA NA chr5 23985489 CGTxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717217 0.717315 0.999863 66 2 0 39.925156 0.5 0.02 -0.271786 15 15 401 418 60 60 0 0 CC 6.013178 20 0 549 0 KEEP + Agap3 YES MNNG_2 chr5 24859116 24859116 C T splicing Kmt2c(NM_001081383:exon22:c.3415+1G>A) NA NA splicing Mll3(uc008wsv.1:exon22:c.3415+1G>A) NA NA splicing "ENSMUSG00000038056(ENSMUST00000088253:exon21:c.3292+1G>A,ENSMUST00000045291:exon22:c.3415+1G>A,ENSMUST00000173073:exon21:c.3295+1G>A)" NA NA 5qA3 NA NA chr5 24859116 TTAxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 141 2 0 59.737084 0.428571 0.02 1.204206 32 24 886 649 60 60 0 0 CC 19.549586 65 0 1783 0 KEEP - Kmt2c YES MNNG_2 chr5 28397982 28397982 C T exonic Insig1 nonsynonymous SNV NM_153526:c.C5T:p.P2L exonic Insig1 nonsynonymous SNV uc012dtq.1:c.C5T:p.P2L exonic ENSMUSG00000045294 nonsynonymous SNV ENSMUST00000059155:c.C5T:p.P2L 5qB1 NA NA chr5 28397982 TGCxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.581666 0.58293 0.997832 60 2 0 52.711445 0.692308 0.02 -0.22802 8 18 239 511 60 60 0 0 CC 4.812673 16 0 446 0 KEEP + Insig1 YES MNNG_2 chr5 31962379 31962379 C T exonic Rbks nonsynonymous SNV NM_153196:c.G418A:p.A140T exonic Rbks nonsynonymous SNV uc008wyv.1:c.G418A:p.A140T exonic ENSMUSG00000029136 nonsynonymous SNV ENSMUST00000031018:c.G418A:p.A140T 5qB1 NA NA chr5 31962379 CTGxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.353816 0.353947 0.99963 53 0 0 26.729772 0.555556 0.02 -0.165961 8 10 204 273 60 60 0 0 CC 8.717328 29 0 784 0 KEEP + Rbks YES MNNG_2 chr5 33559366 33559366 C T exonic Spon2 synonymous SNV NM_133903:c.G321A:p.K107K exonic Spon2 synonymous SNV uc008xai.2:c.G321A:p.K107K exonic ENSMUSG00000037379 synonymous SNV ENSMUST00000046186:c.G321A:p.K107K 5qB1 NA NA chr5 33559366 CTCxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 123 0 0 108.935169 0.644068 0.02 1.276135 21 38 606 1075 60 60 0 0 CC 14.438553 48 0 1352 0 KEEP - Spon2 YES MNNG_2 chr5 35850739 35850739 C T intronic Cpz NA NA intronic Cpz NA NA intronic ENSMUSG00000036596 NA NA 5qB3 NA NA chr5 35850739 GGCxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.896158 0.899314 0.99649 65 3 0 83.520577 0.690476 0.02 -0.368098 13 29 363 810 60 60 0 0 CC 4.509837 15 0 409 0 KEEP - Cpz YES MNNG_2 chr5 3644944 3644944 C T intronic Gatad1 NA NA intronic Gatad1 NA NA intronic ENSMUSG00000007415 NA NA 5qA1 NA NA chr5 3644944 CTAxAAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 91 0 0 17.942183 0.285714 0.02 -0.26308 20 8 577 214 60 60 0 0 CC 12.06509 48 1 1367 22 KEEP - Gatad1 YES MNNG_2 chr5 3693138 3693138 C T exonic Ankib1 nonsynonymous SNV NM_001003909:c.G2876A:p.S959N exonic "Ankib1,mKIAA1386" nonsynonymous SNV uc012drq.1:c.G998A:p.S333N exonic ENSMUSG00000040351 nonsynonymous SNV ENSMUST00000043551:c.G2876A:p.S959N 5qA1 NA NA chr5 3693138 GCAxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 66 0 0 52.271528 0.612903 0.02 -0.306903 12 19 344 522 60 60 0 0 CC 8.121682 27 0 761 0 KEEP - Ankib1 YES MNNG_2 chr5 4070508 4070508 C T exonic Akap9 synonymous SNV NM_194462:c.C10923T:p.V3641V exonic Akap9 synonymous SNV uc008wid.1:c.C10923T:p.V3641V exonic ENSMUSG00000040407 synonymous SNV ENSMUST00000088917:c.C4443T:p.V1481V 5qA1 NA NA chr5 4070508 CGTxAGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 100 0 0 19.897308 0.272727 0.02 -0.298144 24 9 695 240 60 60 0 0 CC 14.67909 49 0 1391 0 KEEP + Akap9 YES MNNG_2 chr5 45928799 45928799 C T intronic Fam184b NA NA intronic Fam184b NA NA intronic ENSMUSG00000015879 NA NA 5qB3 NA NA chr5 45928799 CCCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899217 0.899314 0.999892 72 0 0 59.96784 0.52381 0.02 -0.368325 20 22 577 621 60 60 0 0 CC 6.914968 23 0 625 0 KEEP - Fam184b YES MNNG_2 chr5 4757293 4757293 C T exonic Fzd1 synonymous SNV NM_021457:c.G288A:p.Q96Q exonic Fzd1 synonymous SNV uc008wig.2:c.G288A:p.Q96Q exonic ENSMUSG00000044674 synonymous SNV ENSMUST00000054294:c.G288A:p.Q96Q 5qA1 NA NA chr5 4757293 GTAxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 115 2 0 56.514654 0.365079 0.02 1.142751 40 23 1162 635 60 60 0 0 CC 12.027399 40 0 1112 0 KEEP - Fzd1 YES MNNG_2 chr5 53233149 53233149 A T exonic Anapc4 nonsynonymous SNV NM_024213:c.A449T:p.N150I exonic Anapc4 nonsynonymous SNV uc008xkw.1:c.A449T:p.N150I exonic ENSMUSG00000029176 nonsynonymous SNV ENSMUST00000031072:c.A449T:p.N150I 5qC1 NA NA chr5 53233149 ACAxCAG A T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 147 2 0 76.601452 0.666667 0.02 -0.367935 14 28 375 749 60 60 0 0 AA 25.863263 86 0 2345 0 KEEP + Anapc4 NO MNNG_2 chr5 5668061 5668061 C T UTR3 Steap2 NA NA UTR3 Steap2 NA NA UTR3 ENSMUSG00000015653 NA NA 5qA1 NA NA chr5 5668061 CAGxACC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 141 4 0 59.384147 0.35443 0.02 0.897184 51 28 1428 684 60 60 0 0 CC 12.326725 41 0 1121 0 KEEP - Steap2 YES MNNG_2 chr5 65387091 65387091 G A exonic Fam114a1 nonsynonymous SNV NM_026667:c.G386A:p.G129D exonic Fam114a1 nonsynonymous SNV uc012dwn.1:c.G386A:p.G129D exonic ENSMUSG00000029185 nonsynonymous SNV ENSMUST00000031080:c.G386A:p.G129D 5qC3.1 NA NA chr5 65387091 CAGxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 275 7 0 143.729302 0.423358 0.02 2.163845 79 58 2229 1566 60 60 0 0 GG 24.947738 83 0 2294 0 KEEP + Fam114a1 YES MNNG_2 chr5 75081686 75081686 G A exonic Lnx1 nonsynonymous SNV NM_001159577:c.C127T:p.L43F exonic Lnx1 nonsynonymous SNV uc008xtt.2:c.C127T:p.L43F exonic ENSMUSG00000029228 nonsynonymous SNV ENSMUST00000087161:c.C127T:p.L43F 5qC3.3 NA NA chr5 75081686 TGAxGTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 97 0 0 36.316296 0.333333 0.02 -0.394623 30 15 868 416 60 60 0 0 GG 13.235312 44 0 1239 0 KEEP - Lnx1 YES MNNG_2 chr5 77433051 77433051 C T upstream Arl9 NA NA upstream Arl9 NA NA upstream ENSMUSG00000063820 NA NA 5qC3.3 NA NA chr5 77433051 CAAxCGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 86 0 0 14.057252 0.3 0.02 -0.175377 14 6 392 165 60 60 0 0 CC 15.338029 51 0 1384 0 KEEP NA Arl9 YES MNNG_2 chr5 77436240 77436240 C T ncRNA_exonic 1700112J05Rik NA NA ncRNA_exonic AK018948 NA NA ncRNA_exonic ENSMUSG00000086632 NA NA 5qC3.3 NA NA chr5 77436240 TGAxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.99986 44 0 0 25.557516 0.526316 0.02 -0.166586 9 10 253 265 60 60 0 0 CC 5.714246 19 0 517 0 KEEP + 1700112J05Rik YES MNNG_2 chr5 7975692 7975692 G A exonic Steap4 synonymous SNV NM_054098:c.G252A:p.E84E exonic Steap4 synonymous SNV uc008wjg.1:c.G252A:p.E84E exonic ENSMUSG00000012428 synonymous SNV ENSMUST00000115421:c.G252A:p.E84E 5qA1 NA NA chr5 7975692 AGAxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 96 0 0 23.8802 0.30303 0.02 -0.289402 23 10 666 279 60 60 0 0 GG 15.942376 53 0 1489 0 KEEP + Steap4 YES MNNG_2 chr5 8422530 8422530 T C UTR5 Dbf4 NA NA UTR5 Dbf4 NA NA UTR5 ENSMUSG00000002297 NA NA 5qA1 NA NA chr5 8422530 ACCxACA T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 155 2 0 75.688802 0.371795 0.02 1.199692 49 29 1280 842 60 60 0 0 TT 18.335797 61 0 1600 0 KEEP - Dbf4 NO MNNG_2 chr5 87355442 87355442 C T exonic Ugt2b1 nonsynonymous SNV NM_152811:c.G82A:p.V28M exonic Ugt2b1 nonsynonymous SNV uc008xyc.1:c.G82A:p.V28M exonic ENSMUSG00000035836 nonsynonymous SNV ENSMUST00000031183:c.G82A:p.V28M 5qE1 NA NA chr5 87355442 ACAxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 41 0 0 19.197652 0.583333 0.02 -0.105229 5 7 142 194 60 60 0 0 CC 8.421086 28 0 766 0 KEEP - Ugt2b1 YES MNNG_2 chr5 88984362 88984362 C T exonic Utp3 nonsynonymous SNV NM_023054:c.C724T:p.P242S exonic Utp3 nonsynonymous SNV uc008xzv.1:c.C724T:p.P242S exonic ENSMUSG00000070697 nonsynonymous SNV ENSMUST00000090413:c.C724T:p.P242S 5qE1 NA NA chr5 88984362 GAAxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 45 0 0 11.672093 0.3125 0.02 -0.140203 11 5 290 136 60 60 0 0 CC 6.917058 23 0 626 0 KEEP + Utp3 YES MNNG_2 chr5 8935209 8935209 G A exonic Abcb4 nonsynonymous SNV NM_008830:c.G2089A:p.V697I exonic Abcb4 nonsynonymous SNV uc008wks.1:c.G2089A:p.V697I exonic ENSMUSG00000042476 nonsynonymous SNV ENSMUST00000003717:c.G2089A:p.V697I 5qA1 NA NA chr5 8935209 AAGxTCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077168 0.077336 0.997832 31 0 0 13.498789 0.555556 0.02 -0.078921 4 5 113 138 60 60 0 0 GG 4.508178 15 0 404 0 KEEP + Abcb4 YES MNNG_2 chr5 92834985 92834985 C T intronic Art3 NA NA intronic "Art3,art3" NA NA exonic ENSMUSG00000034842 nonsynonymous SNV ENSMUST00000117108:c.C920T:p.P307L 5qE2 NA NA chr5 92834985 AACxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 50 2 0 15.208673 0.428571 0.02 -0.122768 8 6 233 165 60 60 0 0 CC 8.422129 28 0 781 0 KEEP + Art3 YES MNNG_2 chr5 93209914 93209914 C T exonic Shroom3 synonymous SNV NM_015756:c.C301T:p.L101L exonic Shroom3 synonymous SNV uc008ydt.1:c.C301T:p.L101L exonic ENSMUSG00000029381 synonymous SNV ENSMUST00000113055:c.C301T:p.L101L 5qE2 NA NA chr5 93209914 ACCxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981653 0.987943 0.993634 84 0 0 62.837587 0.40678 0.02 1.267407 35 24 998 687 60 60 0 0 CC 3.609309 12 0 332 0 KEEP + Shroom3 YES MNNG_2 chr5 93820273 93820273 C T intergenic "Ccng2(dist=115016),C87414(dist=243938)" NA NA intergenic "Ccng2(dist=115016),C87414(dist=243938)" NA NA ncRNA_exonic ENSMUSG00000053208 NA NA 5qE2 NA NA chr5 93820273 CTTxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 141 0 0 55.620573 0.538462 0.02 -0.341994 18 21 523 573 60 60 0 0 CC 26.473068 88 0 2526 0 KEEP NA Ccng2 YES MNNG_2 chr5 97065830 97065830 C T exonic Fras1 synonymous SNV NM_175473:c.C2652T:p.T884T exonic Fras1 synonymous SNV uc008yfk.1:c.C2652T:p.T884T exonic ENSMUSG00000034687 synonymous SNV ENSMUST00000036019:c.C2652T:p.T884T 5qE3 NA NA chr5 97065830 GACxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 267 0 0 79.627007 0.323232 0.02 2.603641 67 32 1885 914 60 60 0 0 CC 41.799661 139 0 3868 0 KEEP + Fras1 YES MNNG_2 chr5 97079513 97079513 C T exonic Fras1 synonymous SNV NM_175473:c.C3363T:p.D1121D exonic Fras1 synonymous SNV uc008yfk.1:c.C3363T:p.D1121D exonic ENSMUSG00000034687 synonymous SNV ENSMUST00000036019:c.C3363T:p.D1121D 5qE3 NA NA chr5 97079513 GGAxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58289 0.58293 0.999931 56 0 0 33.872299 0.5 0.02 -0.227977 13 13 358 355 60 60 0 0 CC 7.517837 25 0 679 0 KEEP + Fras1 YES MNNG_2 chr5 97170012 97170012 C T exonic Fras1 synonymous SNV NM_175473:c.C8397T:p.V2799V exonic Fras1 synonymous SNV uc008yfk.1:c.C8397T:p.V2799V exonic ENSMUSG00000034687 synonymous SNV ENSMUST00000036019:c.C8397T:p.V2799V 5qE3 NA NA chr5 97170012 TGTxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 91 0 0 49.124417 0.5 0.02 -0.333009 19 19 549 515 60 60 0 0 CC 12.934365 43 0 1219 0 KEEP + Fras1 YES MNNG_2 chr6 106729325 106729325 G A exonic Trnt1 nonsynonymous SNV NM_001242358:c.G1202A:p.G401E exonic Trnt1 nonsynonymous SNV uc009dcy.1:c.G1202A:p.G401E exonic ENSMUSG00000013736 nonsynonymous SNV ENSMUST00000057578:c.G1202A:p.G401E 6qE1 NA NA chr6 106729325 CAGxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 52 2 0 32.966426 0.733333 0.02 -0.140318 4 11 117 315 60 60 0 0 GG 9.024376 30 0 848 0 KEEP + Trnt1 YES MNNG_2 chr6 108313642 108313642 C T exonic Itpr1 synonymous SNV NM_010585:c.C894T:p.Y298Y exonic Itpr1 synonymous SNV uc009ddi.1:c.C744T:p.Y248Y exonic ENSMUSG00000030102 synonymous SNV ENSMUST00000166013:c.C744T:p.Y248Y 6qE1 NA NA chr6 108313642 GTAxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 99 0 0 26.704754 0.366667 0.02 -0.27112 19 11 531 300 60 60 0 0 CC 13.83741 46 0 1307 0 KEEP + Itpr1 YES MNNG_2 chr6 112162453 112162453 G A ncRNA_exonic 1700054K19Rik NA NA ncRNA_exonic 1700054K19Rik NA NA intergenic "ENSMUSG00000088572(dist=212818),ENSMUSG00000077262(dist=21704)" NA NA 6qE3 NA NA chr6 112162453 GAGxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 109 1 0 26.153214 0.323529 0.02 -0.298128 23 11 640 302 60 60 0 0 GG 18.928744 63 0 1715 0 KEEP + 1700054K19Rik YES MNNG_2 chr6 113190461 113190461 G A intronic Mtmr14 NA NA intronic Mtmr14 NA NA intronic ENSMUSG00000030269 NA NA 6qE3 NA NA chr6 113190461 CGGxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 50 2 0 7.201939 0.25 0.02 -0.149022 12 4 335 92 60 60 0 0 GG 7.519236 25 0 688 0 KEEP + Mtmr14 YES MNNG_2 chr6 113291907 113291907 G A exonic Camk1 nonsynonymous SNV NM_133926:c.C38T:p.A13V exonic Camk1 nonsynonymous SNV uc009dfk.1:c.C38T:p.A13V exonic ENSMUSG00000030272 nonsynonymous SNV ENSMUST00000032409:c.C38T:p.A13V 6qE3 NA NA chr6 113291907 TCCxCCT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 345 5 0 61.025722 0.272727 0.02 0.731057 72 27 1800 733 60 60 0 0 GG 56.143342 187 0 4585 0 KEEP - Camk1 YES MNNG_2 chr6 113359154 113359154 G A exonic Ttll3 synonymous SNV NM_133923:c.G1953A:p.V651V exonic Ttll3 synonymous SNV uc009dfx.2:c.G1284A:p.V428V exonic ENSMUSG00000030276 synonymous SNV ENSMUST00000165471:c.G558A:p.V186V 6qE3 NA NA chr6 113359154 TGTxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 127 3 0 44.940196 0.38 0.02 1.141378 31 19 893 503 60 60 0 0 GG 18.04526 60 0 1648 0 KEEP + Ttll3 YES MNNG_2 chr6 115751938 115751938 G A exonic Cand2 synonymous SNV NM_025958:c.G3444A:p.R1148R exonic Cand2 synonymous SNV uc009djb.2:c.G3444A:p.R1148R exonic ENSMUSG00000030319 synonymous SNV ENSMUST00000075995:c.G3444A:p.R1148R 6qE3 NA NA chr6 115751938 CCGxCTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 229 0 0 49.40055 0.370968 0.02 1.027815 39 23 1072 562 60 60 0 0 GG 37.519615 130 1 3414 13 KEEP + Cand2 YES MNNG_2 chr6 115910901 115910901 G A intronic Plxnd1 NA NA intronic Plxnd1 NA NA intronic ENSMUSG00000030123 NA NA 6qE3 NA NA chr6 115910901 CAGxGGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 115 0 0 38.842149 0.280702 0.02 1.276174 41 16 1175 459 60 60 0 0 GG 14.426922 48 0 1310 0 KEEP - Plxnd1 YES MNNG_2 chr6 116597637 116597637 G C exonic Rassf4 nonsynonymous SNV NM_178045:c.C229G:p.R77G exonic Rassf4 nonsynonymous SNV uc009dkm.2:c.C229G:p.R77G exonic ENSMUSG00000042129 nonsynonymous SNV ENSMUST00000035842:c.C229G:p.R77G 6qE3 NA NA chr6 116597637 CTCxCTC G C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.289832 0.292001 0.99257 30 0 0 6.493075 0.176471 0.02 -0.149039 14 3 373 85 60 60 0 0 GG 2.401713 8 0 182 0 KEEP - Rassf4 NO MNNG_2 chr6 118125873 118125873 G A intronic Ret NA NA intronic Ret NA NA intronic ENSMUSG00000030110 NA NA 6qF1 NA NA chr6 118125873 GAAxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.999859 29 0 0 7.332376 0.375 0.02 -0.070155 5 3 144 82 60 60 0 0 GG 5.414296 18 0 505 0 KEEP - Ret YES MNNG_2 chr6 121620036 121620036 C T intronic A2m NA NA intronic A2m NA NA intronic ENSMUSG00000030111 NA NA 6qF1 NA NA chr6 121620036 GTAxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 122 0 0 20.604129 0.25 0.02 -0.315699 27 9 775 251 60 60 0 0 CC 22.557719 75 0 2085 0 KEEP + A2m YES MNNG_2 chr6 122158147 122158147 C T ncRNA_intronic Mug-ps1 NA NA intronic MUG3 NA NA intergenic "ENSMUSG00000071204(dist=56113),ENSMUSG00000030114(dist=62467)" NA NA 6qF1 "Score=0.901196;Name=No.94033,chr6:121804219" NA chr6 122158147 AGGxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 208 2 0 33.818766 0.368421 0.02 -0.333151 24 14 670 380 60 60 0 0 CC 45.061013 150 0 4056 0 KEEP + Mug-ps1 YES MNNG_2 chr6 123773251 123773251 C T exonic Vmn2r25 nonsynonymous SNV NM_001104641:c.G2149A:p.V717M exonic Vmn2r25 nonsynonymous SNV uc009vea.1:c.G2149A:p.V717M exonic ENSMUSG00000072779 nonsynonymous SNV ENSMUST00000162046:c.G2149A:p.V717M 6qF2 "Score=0.95642;Name=No.94058,chr6:123970175" NA chr6 123773251 ACAxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 400 0 1 68.639198 0.378378 0.02 1.04632 46 28 1309 766 60 60 0 0 CC 71.404391 247 1 6941 27 KEEP - Vmn2r25 YES MNNG_2 chr6 126874943 126874943 G A exonic Rad51ap1 synonymous SNV NM_009013:c.C861T:p.V287V exonic Rad51ap1 synonymous SNV uc009dvi.1:c.C861T:p.V287V exonic ENSMUSG00000030346 synonymous SNV ENSMUST00000112220:c.C858T:p.V286V 6qF3 NA NA chr6 126874943 GGGxACC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 99 0 0 59.067571 0.65625 0.02 -0.28061 11 21 317 580 60 60 0 0 GG 15.033974 50 0 1383 0 KEEP - Rad51ap1 YES MNNG_2 chr6 127269674 127269674 C T intergenic "D130058E03(dist=11689),Parp11(dist=134067)" NA NA intergenic "AK043994(dist=107245),Parp11(dist=127184)" NA NA exonic ENSMUSG00000072756 nonsynonymous SNV ENSMUST00000100929:c.C223T:p.L75F 6qF3 NA NA chr6 127269674 GGCxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 35 0 0 9.784492 0.4 0.02 -0.08769 6 4 174 108 60 60 0 0 CC 7.219416 24 0 680 0 KEEP NA D130058E03 YES MNNG_2 chr6 129358932 129358932 G A UTR5 Clec9a NA NA UTR5 Clec9a NA NA UTR5 ENSMUSG00000046080 NA NA 6qF3 NA NA chr6 129358932 CAGxCTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 98 0 0 21.923862 0.346154 0.02 -0.22746 17 9 473 249 60 60 0 0 GG 17.44224 58 0 1605 0 KEEP + Clec9a YES MNNG_2 chr6 131252362 131252362 G A exonic Styk1 nonsynonymous SNV NM_172891:c.C967T:p.L323F exonic Styk1 nonsynonymous SNV uc009eir.1:c.C967T:p.L323F exonic ENSMUSG00000032899 nonsynonymous SNV ENSMUST00000111992:c.C700T:p.L234F 6qF3 NA NA chr6 131252362 AAAxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 188 4 0 67.977122 0.685714 0.02 -0.306919 11 24 322 660 60 60 0 0 GG 35.77891 119 0 3329 0 KEEP - Styk1 YES MNNG_2 chr6 133801781 133801781 G A exonic Kap synonymous SNV NM_010594:c.C279T:p.S93S exonic Kap synonymous SNV uc009ekd.1:c.C279T:p.S93S exonic ENSMUSG00000032758 synonymous SNV ENSMUST00000048032:c.C279T:p.S93S 6qG1 NA NA chr6 133801781 GGAxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 0.999999 57 0 0 10.722992 0.444444 0.02 -0.078925 5 4 141 115 60 60 0 0 GG 10.828974 36 0 1015 0 KEEP - Kap YES MNNG_2 chr6 134470588 134470588 C T exonic Lrp6 nonsynonymous SNV NM_008514:c.G473A:p.G158E exonic Lrp6 nonsynonymous SNV uc009ekl.2:c.G473A:p.G158E exonic ENSMUSG00000030201 nonsynonymous SNV ENSMUST00000032322:c.G473A:p.G158E 6qG1 NA NA chr6 134470588 TCTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 122 6 0 61.463664 0.869565 0.02 -0.201689 3 20 89 558 60 60 0 0 CC 22.862153 76 0 2162 0 KEEP - Lrp6 YES MNNG_2 chr6 136764605 136764605 G A exonic Wbp11 nonsynonymous SNV NM_021714:c.C1459T:p.P487S exonic Wbp11 nonsynonymous SNV uc009emf.2:c.C1459T:p.P487S exonic ENSMUSG00000030216 nonsynonymous SNV ENSMUST00000116514:c.C1459T:p.P487S 6qG1 NA NA chr6 136764605 GGGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 114 0 0 24.58559 0.244898 0.02 -0.429055 37 12 1012 307 60 60 0 0 GG 15.251869 51 0 1339 0 KEEP - Wbp11 YES MNNG_2 chr6 24746373 24746373 G A exonic Spam1 nonsynonymous SNV NM_009241:c.G322A:p.E108K exonic Spam1 nonsynonymous SNV uc009bca.1:c.G322A:p.E108K exonic ENSMUSG00000029682 nonsynonymous SNV ENSMUST00000031693:c.G322A:p.E108K 6qA3.1 NA NA chr6 24746373 GCAxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353932 0.353947 0.999957 50 0 0 14.516359 0.315789 0.02 -0.166635 13 6 387 168 60 60 0 0 GG 7.821778 26 0 749 0 KEEP + Spam1 YES MNNG_2 chr6 29391222 29391222 G A exonic Flnc nonsynonymous SNV NM_001081185:c.G1174A:p.V392M exonic Flnc nonsynonymous SNV uc009bdn.1:c.G1174A:p.V392M exonic ENSMUSG00000068699 nonsynonymous SNV ENSMUST00000065090:c.G1174A:p.V392M 6qA3.3 NA NA chr6 29391222 AACxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 141 0 0 57.668757 0.65625 0.02 -0.280555 11 21 293 566 60 60 0 1 GG 24.632899 82 0 2105 0 KEEP + Flnc YES MNNG_2 chr6 38402909 38402909 G A exonic Ubn2 nonsynonymous SNV NM_177185:c.G559A:p.D187N exonic Ubn2 nonsynonymous SNV uc009bkf.1:c.G70A:p.D24N exonic ENSMUSG00000038538 nonsynonymous SNV ENSMUST00000162593:c.G55A:p.D19N 6qB1 NA NA chr6 38402909 CAAxATT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 244 4 0 22.70466 0.25 0.02 -0.350771 30 10 857 277 60 60 0 0 GG 46.328192 154 0 4432 0 KEEP + Ubn2 YES MNNG_2 chr6 42410614 42410614 C A exonic Olfr458 nonsynonymous SNV NM_146444:c.G403T:p.V135L exonic Olfr458 nonsynonymous SNV uc009bri.1:c.G403T:p.V135L exonic ENSMUSG00000068574 nonsynonymous SNV ENSMUST00000090156:c.G403T:p.V135L 6qB2.1 NA NA chr6 42410614 TTAxCAC C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 126 0 0 82.075508 0.74359 0.02 -0.34193 10 29 279 779 60 60 0 0 CC 21.345034 71 0 1946 0 KEEP - Olfr458 NO MNNG_2 chr6 42592819 42592819 G A exonic Fam115c nonsynonymous SNV NM_146174:c.C272T:p.T91I exonic Fam115c nonsynonymous SNV uc009brn.1:c.C272T:p.T91I exonic ENSMUSG00000029851 nonsynonymous SNV ENSMUST00000031879:c.C272T:p.T91I 6qB2.1 NA NA chr6 42592819 GGAxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 103 0 0 15.044708 0.21875 0.02 -0.28041 25 7 689 190 60 60 0 0 GG 18.340388 61 0 1686 0 KEEP - Fam115c YES MNNG_2 chr6 48017330 48017330 G A exonic Zfp746 nonsynonymous SNV NM_001163475:c.C550T:p.L184F exonic Zfp746 nonsynonymous SNV uc009btv.2:c.C550T:p.L184F exonic ENSMUSG00000057691 nonsynonymous SNV ENSMUST00000073124:c.C550T:p.L184F 6qB2.3 NA NA chr6 48017330 GGAxGTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 62 0 0 19.342447 0.285714 0.02 -0.24556 20 8 583 228 60 60 0 0 GG 8.72001 29 0 796 0 KEEP - Zfp746 YES MNNG_2 chr6 57557722 57557722 G A intronic Herc6 NA NA intronic Herc6 NA NA intronic ENSMUSG00000029798 NA NA 6qB3 NA NA chr6 57557722 TTAxACT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 96 0 0 11.813223 0.294118 0.02 -0.149085 12 5 347 139 60 60 0 0 GG 19.547826 65 0 1843 0 KEEP + Herc6 YES MNNG_2 chr6 65646126 65646126 G A exonic Ndnf synonymous SNV NM_172399:c.G93A:p.Q31Q exonic A930038C07Rik synonymous SNV uc009cei.1:c.G93A:p.Q31Q exonic ENSMUSG00000049001 synonymous SNV ENSMUST00000054351:c.G93A:p.Q31Q 6qC1 NA NA chr6 65646126 TCAxATG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 112 3 0 29.55383 0.4 0.02 -0.263064 18 12 516 326 60 60 0 0 GG 19.253656 64 0 1846 0 KEEP + Ndnf YES MNNG_2 chr6 65781251 65781251 G A exonic Prdm5 synonymous SNV NM_027547:c.G186A:p.G62G exonic Prdm5 synonymous SNV uc012emx.1:c.G102A:p.G34G exonic ENSMUSG00000029913 synonymous SNV ENSMUST00000081219:c.G102A:p.G34G 6qC1 NA NA chr6 65781251 TGGxAGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036742 0.036766 0.999366 26 0 0 15.109315 0.833333 0.02 -0.052614 1 5 28 139 60 60 0 0 GG 5.113424 17 0 478 0 KEEP + Prdm5 YES MNNG_2 chr6 67741291 67741291 G A intergenic "4930515G16Rik(dist=225598),Rprl1(dist=1535640)" NA NA ncRNA_intronic abParts NA NA exonic ENSMUSG00000076506 nonsynonymous SNV ENSMUST00000103307:c.G136A:p.A46T 6qC1 NA NA chr6 67741291 CAGxCAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 79 0 0 27.068923 0.625 0.02 -0.140296 6 10 172 269 60 60 0 0 GG 16.480425 55 0 1493 0 KEEP + 4930515G16Rik YES MNNG_2 chr6 67904336 67904336 A G intergenic "4930515G16Rik(dist=388643),Rprl1(dist=1372595)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076512 nonsynonymous SNV ENSMUST00000103313:c.T239C:p.V80A 6qC1 NA NA chr6 67904336 GGGxCAC A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 93 0 0 10.277149 0.363636 0.02 -0.10523 7 4 193 115 60 60 0 0 AA 20.150071 67 0 1830 0 KEEP + 4930515G16Rik NO MNNG_2 chr6 6817052 6817052 G A exonic Dlx6 stopgain SNV NM_010057:c.G654A:p.W218X exonic Dlx6 stopgain SNV uc009aww.1:c.G654A:p.W218X exonic ENSMUSG00000029754 stopgain SNV ENSMUST00000031768:c.G237A:p.W79X 6qA1 NA NA chr6 6817052 ATGxTTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 84 0 0 46.223477 0.5625 0.02 -0.289043 14 18 399 472 60 60 0 0 GG 11.730949 39 0 1090 0 KEEP - Dlx6 YES MNNG_2 chr6 71549376 71549376 G A exonic Kdm3a nonsynonymous SNV NM_173001:c.C2447T:p.T816I exonic Kdm3a nonsynonymous SNV uc009cgy.2:c.C2447T:p.T816I exonic ENSMUSG00000053470 nonsynonymous SNV ENSMUST00000101304:c.C971T:p.T324I 6qC1 NA NA chr6 71549376 CTGxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.551689 0.552887 0.997832 48 0 0 20.812281 0.36 0.02 -0.218643 16 9 428 236 60 60 0 0 GG 4.812078 16 0 439 0 KEEP - Kdm3a YES MNNG_2 chr6 83352730 83352730 G A exonic Tet3 nonsynonymous SNV NM_183138:c.C2044T:p.P682S exonic Tet3 nonsynonymous SNV uc009cni.2:c.C2044T:p.P682S exonic ENSMUSG00000034832 nonsynonymous SNV ENSMUST00000089622:c.C2044T:p.P682S 6qC3 NA NA chr6 83352730 TAGxTGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 142 3 0 40.441923 0.309091 0.02 1.311268 38 17 1064 471 60 60 0 0 GG 20.104337 67 0 1823 0 KEEP - Tet3 YES MNNG_2 chr6 85593107 85593107 G A intronic Alms1 NA NA intronic Alms1 NA NA intronic ENSMUSG00000063810 NA NA 6qC3 NA NA chr6 85593107 GGAxAGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 50 0 0 8.804831 0.25 0.02 -0.140122 12 4 336 108 60 60 0 0 GG 8.722948 29 0 832 0 KEEP + Alms1 YES MNNG_2 chr6 8617263 8617263 G A intronic Ica1 NA NA exonic Ica1 nonsynonymous SNV uc009axz.1:c.C902T:p.T301I exonic ENSMUSG00000062995 nonsynonymous SNV ENSMUST00000115518:c.C902T:p.T301I 6qA1 NA NA chr6 8617263 GCAxTTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 97 0 0 16.448734 0.291667 0.02 -0.210457 17 7 479 194 60 60 0 0 GG 16.844495 56 0 1572 0 KEEP - Ica1 YES MNNG_2 chr6 87703045 87703045 G A exonic Efcc1 nonsynonymous SNV NM_001159697:c.G1342A:p.E448K exonic Ccdc48 nonsynonymous SNV uc012eoo.1:c.G1342A:p.E448K exonic ENSMUSG00000068263 nonsynonymous SNV ENSMUST00000032132:c.G1342A:p.E448K 6qD1 NA NA chr6 87703045 GCAxAAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818349 0.818465 0.999859 62 0 0 20.331405 0.257143 0.02 -0.315662 26 9 743 247 60 60 0 0 GG 5.414828 18 0 514 0 KEEP + Efcc1 YES MNNG_2 chr6 87715128 87715128 A T intergenic "Efcc1(dist=9223),Gp9(dist=13002)" NA NA intergenic "Ccdc48(dist=9223),Gp9(dist=13002)" NA NA exonic ENSMUSG00000068262 synonymous SNV ENSMUST00000089501:c.T1071A:p.R357R 6qD1 "Score=0.988662;Name=No.95713,chrX:12779671" NA chr6 87715128 CCGxCGT A T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 318 6 2 59.378235 0.298851 0.02 0.92437 61 26 1624 700 60 60 0 0 AA 55.015296 183 0 4934 0 KEEP NA Efcc1 NO MNNG_2 chr6 91216064 91216064 G A exonic Fbln2 nonsynonymous SNV NM_001081437:c.G2657A:p.G886D exonic Fbln2 nonsynonymous SNV uc009cxx.1:c.G2657A:p.G886D exonic ENSMUSG00000064080 nonsynonymous SNV ENSMUST00000113498:c.G2657A:p.G886D 6qD1 NA NA chr6 91216064 TCGxCAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 51 1 0 16.73424 0.333333 0.02 -0.201695 14 7 403 192 60 60 0 0 GG 6.897956 23 0 621 0 KEEP + Fbln2 YES MNNG_2 chr6 91219916 91219916 G A intronic Fbln2 NA NA intronic Fbln2 NA NA intronic ENSMUSG00000064080 NA NA 6qD1 NA NA chr6 91219916 CTAxGCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 81 1 0 25.97629 0.282051 0.02 -0.34187 28 11 802 308 60 60 0 0 GG 9.312313 31 0 866 0 KEEP + Fbln2 YES MNNG_2 chr6 91705053 91705053 G A UTR3 Slc6a6 NA NA UTR3 Slc6a6 NA NA UTR3 ENSMUSG00000030096 NA NA 6qD1 NA NA chr6 91705053 GAGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 154 0 0 30.948658 0.297872 0.02 -0.412048 33 14 924 367 60 60 0 0 GG 22.239466 74 0 1996 0 KEEP + Slc6a6 YES MNNG_2 chr7 103107729 103107729 A G intergenic "NONE(dist=NONE),Tenm4(dist=251418)" NA NA intergenic "AK077481(dist=1252222),Odz4(dist=251418)" NA NA UTR3 ENSMUSG00000055099 NA NA 7qE1 NA NA chr7 103107729 GGGxCAG A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019833 0.019982 0.99257 12 0 0 6.652941 1 0.02 -0.035079 0 2 0 57 0 60 0 0 AA 2.405681 8 0 213 0 KEEP NA NONE NO MNNG_2 chr7 108000116 108000116 T C intronic Relt NA NA intronic Relt NA NA intronic ENSMUSG00000008318 NA NA 7qE3 NA NA chr7 108000116 CCCxCAG T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.608972 0.612407 0.994391 47 0 0 53.314282 0.692308 0.02 -0.236776 8 18 223 517 60 60 0 0 TT 3.910331 13 0 363 0 KEEP - Relt NO MNNG_2 chr7 110199950 110199950 C T exonic Olfr583 nonsynonymous SNV NM_146757:c.C137T:p.T46I exonic Olfr583 nonsynonymous SNV uc009itb.1:c.C137T:p.T46I exonic ENSMUSG00000073960 nonsynonymous SNV ENSMUST00000098211:c.C137T:p.T46I 7qE3 NA NA chr7 110199950 CCAxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 112 2 0 17.503927 0.25 0.02 -0.280595 24 8 668 215 60 60 0 0 CC 20.478795 70 1 1901 5 KEEP + Olfr583 YES MNNG_2 chr7 110234432 110234432 C T exonic Olfr584 synonymous SNV NM_147054:c.C399T:p.I133I exonic Olfr584 synonymous SNV uc009itc.1:c.C399T:p.I133I exonic ENSMUSG00000073959 synonymous SNV ENSMUST00000098210:c.C399T:p.I133I 7qE3 NA NA chr7 110234432 TATxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 248 0 12 46.502725 0.289855 0.02 0.992248 49 20 1429 550 60 60 0 0 CC 41.201268 137 0 3915 0 KEEP + Olfr584 YES MNNG_2 chr7 110760572 110760572 G A exonic Olfr620 synonymous SNV NM_146812:c.C294T:p.A98A exonic Olfr620 synonymous SNV uc009iue.1:c.C294T:p.A98A exonic ENSMUSG00000045132 synonymous SNV ENSMUST00000052152:c.C294T:p.A98A 7qE3 NA NA chr7 110760572 GCAxGCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 111 0 0 61.154352 0.628571 0.02 -0.306885 13 22 380 607 60 60 0 0 GG 19.546847 65 0 1826 0 KEEP - Olfr620 YES MNNG_2 chr7 111095644 111095644 C T exonic Olfr633 nonsynonymous SNV NM_146354:c.C563T:p.P188L exonic Olfr633 nonsynonymous SNV uc009iuz.1:c.C563T:p.P188L exonic ENSMUSG00000073937 nonsynonymous SNV ENSMUST00000098188:c.C563T:p.P188L 7qE3 NA NA chr7 111095644 TTCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 93 5 4 12.067807 0.277778 0.02 -0.157836 13 5 370 143 60 60 0 0 CC 16.543622 55 0 1536 0 KEEP + Olfr633 YES MNNG_2 chr7 111836618 111836618 C T exonic Olfr661 stopgain SNV NM_146748:c.C88T:p.Q30X exonic Olfr661 stopgain SNV uc009iww.1:c.C88T:p.Q30X exonic ENSMUSG00000073920 stopgain SNV ENSMUST00000098168:c.C88T:p.Q30X 7qE3 NA NA chr7 111836618 TGGxAAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 95 0 1 20.593051 0.310345 0.02 -0.254302 20 9 573 241 60 60 0 0 CC 16.844538 56 0 1569 0 KEEP + Olfr661 YES MNNG_2 chr7 115489665 115489665 C T exonic Olfr493 nonsynonymous SNV NM_146310:c.G829A:p.V277M exonic Olfr493 nonsynonymous SNV uc009jch.1:c.G829A:p.V277M exonic ENSMUSG00000062710 nonsynonymous SNV ENSMUST00000080106:c.G829A:p.V277M 7qE3 NA NA chr7 115489665 ACAxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 235 0 0 17.038493 0.222222 0.02 -0.315664 28 8 775 215 60 60 0 0 CC 51.387391 171 0 4612 0 KEEP - Olfr493 YES MNNG_2 chr7 120019642 120019642 C T exonic Tead1 synonymous SNV NM_001166585:c.C708T:p.D236D exonic Tead1 synonymous SNV uc012fsh.1:c.C708T:p.D236D exonic ENSMUSG00000055320 synonymous SNV ENSMUST00000170352:c.C645T:p.D215D 7qF1 NA NA chr7 120019642 TGAxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 107 0 0 17.53988 0.363636 0.02 -0.192622 14 8 386 200 60 60 0 0 CC 19.55123 65 0 1810 0 KEEP + Tead1 YES MNNG_2 chr7 126620552 126620552 C T exonic Umod synonymous SNV NM_001278605:c.G504A:p.K168K exonic Umod synonymous SNV uc009jlb.1:c.G504A:p.K168K exonic ENSMUSG00000030963 synonymous SNV ENSMUST00000033263:c.G504A:p.K168K 7qF2 NA NA chr7 126620552 CAGxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92654 0.92664 0.999892 77 2 0 35.515517 0.333333 0.02 -0.394625 30 15 876 408 60 60 0 0 CC 6.918713 23 0 652 0 KEEP - Umod YES MNNG_2 chr7 129187785 129187785 C A intronic Ears2 NA NA intronic Ears2 NA NA intronic ENSMUSG00000030871 NA NA 7qF3 NA NA chr7 129187785 TGTxAAA C A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999998 54 0 0 37.111711 1 0.02 -0.105193 0 12 0 314 0 60 0 0 CC 9.927729 33 0 953 0 KEEP - Ears2 NO MNNG_2 chr7 129221950 129221950 C T intronic Ubfd1 NA NA intronic Ubfd1 NA NA intronic ENSMUSG00000030870 NA NA 7qF3 NA NA chr7 129221950 TTCxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119761 0.120436 0.994391 24 0 0 10.58526 0.4 0.02 -0.096472 6 4 174 116 60 60 0 0 CC 3.910307 13 0 363 0 KEEP + Ubfd1 YES MNNG_2 chr7 133596187 133596187 C T exonic Atp2a1 synonymous SNV NM_007504:c.G1401A:p.R467R exonic Atp2a1 synonymous SNV uc009jrf.1:c.G1401A:p.R467R exonic ENSMUSG00000030730 synonymous SNV ENSMUST00000032974:c.G1401A:p.R467R 7qF3 NA NA chr7 133596187 GGCxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999907 0.999907 1 269 2 0 47.490729 0.233333 0.02 0.9692 69 21 1993 587 60 60 0 0 CC 40.244554 134 0 3731 0 KEEP - Atp2a1 YES MNNG_2 chr7 134159912 134159912 C T intronic Pagr1a NA NA intronic 2900092E17Rik NA NA intronic "ENSMUSG00000030680,ENSMUSG00000092534" NA NA 7qF3 NA NA chr7 134159912 GTGxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 96 1 0 27.113859 0.285714 0.02 -0.368283 30 12 862 323 60 60 0 0 CC 13.519473 45 0 1237 0 KEEP - Pagr1a YES MNNG_2 chr7 13432129 13432129 G A intronic Zfp110 NA NA intronic Zfp110 NA NA intronic ENSMUSG00000058638 NA NA 7qA1 NA NA chr7 13432129 TATxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 148 2 0 62.681204 0.571429 0.02 -0.368267 18 24 518 637 60 60 0 0 GG 23.76583 79 0 2274 0 KEEP + Zfp110 YES MNNG_2 chr7 134487386 134487386 C T exonic Zfp768 synonymous SNV NM_146202:c.G1092A:p.Q364Q exonic Zfp768 synonymous SNV uc009jvc.1:c.G1092A:p.Q364Q exonic ENSMUSG00000047371 synonymous SNV ENSMUST00000060783:c.G1092A:p.Q364Q 7qF3 NA NA chr7 134487386 ACGxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780965 0.78106 0.999879 60 0 0 21.223134 0.294118 0.02 -0.298056 24 10 694 254 60 60 0 0 CC 6.60144 22 0 589 0 KEEP - Zfp768 YES MNNG_2 chr7 135383850 135383850 G A exonic Armc5 synonymous SNV NM_146205:c.G825A:p.L275L exonic Armc5 synonymous SNV uc009jyk.1:c.G825A:p.L275L exonic ENSMUSG00000042178 synonymous SNV ENSMUST00000044660:c.G825A:p.L275L 7qF3 NA NA chr7 135383850 TCTxGGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 138 4 0 118.377848 0.586667 0.02 1.127193 31 44 890 1195 60 60 0 0 GG 15.330369 51 0 1414 0 KEEP + Armc5 YES MNNG_2 chr7 13637527 13637527 C T intronic Mzf1 NA NA intronic Mzf1 NA NA intronic ENSMUSG00000030380 NA NA 7qA1 NA NA chr7 13637527 GCTxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 46 0 0 20.396709 0.5 0.02 -0.1403 8 8 233 214 60 60 0 0 CC 7.520846 25 0 718 0 KEEP - Mzf1 YES MNNG_2 chr7 13717518 13717518 C T exonic Vmn1r87 nonsynonymous SNV NM_134227:c.G190A:p.A64T exonic Vmn1r87 nonsynonymous SNV uc009ffi.1:c.G190A:p.A64T exonic ENSMUSG00000070815 nonsynonymous SNV ENSMUST00000094827:c.G190A:p.A64T 7qA1 NA NA chr7 13717518 CTGxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099712 0.099721 0.999909 36 0 0 10.185048 0.4 0.02 -0.087696 6 4 172 112 60 60 0 0 CC 7.218567 24 0 663 0 KEEP - Vmn1r87 YES MNNG_2 chr7 139751364 139751364 C T exonic Oat nonsynonymous SNV NM_016978:c.G1124A:p.G375E exonic Oat nonsynonymous SNV uc009kcb.1:c.G1124A:p.G375E exonic ENSMUSG00000030934 nonsynonymous SNV ENSMUST00000084500:c.G1124A:p.G375E 7qF3 NA NA chr7 139751364 AACxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999998 55 0 0 15.909672 0.428571 0.02 -0.122781 8 6 233 172 60 60 0 0 CC 10.226689 34 0 947 0 KEEP - Oat YES MNNG_2 chr7 142865925 142865925 C T intronic Ptpre NA NA intronic Ptpre NA NA intronic ENSMUSG00000041836 NA NA 7qF3 NA NA chr7 142865925 TCTxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353723 0.353947 0.999366 43 0 0 17.20831 0.368421 0.02 -0.166625 12 7 350 193 60 60 0 0 CC 5.114077 17 0 486 0 KEEP + Ptpre YES MNNG_2 chr7 146838314 146838314 C T intergenic "E030019B06Rik(dist=36086),Gpr123(dist=181759)" NA NA exonic 9330101J02Rik synonymous SNV uc012fvw.1:c.G288A:p.R96R exonic ENSMUSG00000049571 synonymous SNV ENSMUST00000129990:c.G2631A:p.R877R 7qF4 NA NA chr7 146838314 TAGxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 49 0 0 16.54589 0.333333 0.02 -0.20121 14 7 364 190 60 60 0 0 CC 6.015397 20 0 550 0 KEEP - E030019B06Rik YES MNNG_2 chr7 147409892 147409892 A G exonic Cd163l1 nonsynonymous SNV NM_172909:c.A1103G:p.D368G exonic Cd163l1 nonsynonymous SNV uc009khi.2:c.A1103G:p.D368G exonic ENSMUSG00000025461 nonsynonymous SNV ENSMUST00000026531:c.A1103G:p.D368G 7qF4 NA NA chr7 147409892 CAGxTGC A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 95 0 0 44.300381 0.36 0.02 -0.43837 32 18 849 499 60 60 0 0 AA 11.126838 37 0 996 0 KEEP + Cd163l1 NO MNNG_2 chr7 150646532 150646532 C T exonic Cdkn1c synonymous SNV NM_001161624:c.G81A:p.A27A exonic Cdkn1c synonymous SNV uc009kpd.2:c.G42A:p.A14A exonic ENSMUSG00000037664 synonymous SNV ENSMUST00000037287:c.G42A:p.A14A 7qF5 NA NA chr7 150646532 ACGxGCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 239 2 0 64.156499 0.388889 0.02 0.966754 44 28 1052 717 60 60 0 0 CC 34.960379 117 0 2857 0 KEEP - Cdkn1c YES MNNG_2 chr7 15518044 15518044 C T intergenic "Gm4745(dist=266699),Obox2(dist=456156)" NA NA intergenic "Gm4745(dist=266699),Obox2(dist=456156)" NA NA intergenic "ENSMUSG00000075887(dist=20233),ENSMUSG00000074369(dist=421342)" NA NA 7qA1 "Score=0.972196;Name=No.98446,chr7:16175725" NA chr7 15518044 TAAxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 124 0 1 29.234769 0.578947 0.02 -0.166486 8 11 215 296 60 60 0 0 CC 25.564757 85 0 2332 0 KEEP NA Gm4745 YES MNNG_2 chr7 17009240 17009240 C T exonic Zc3h4 nonsynonymous SNV NM_198631:c.C1001T:p.P334L exonic Zc3h4 nonsynonymous SNV uc012fah.1:c.C1001T:p.P334L exonic ENSMUSG00000059273 nonsynonymous SNV ENSMUST00000086119:c.C1148T:p.P383L 7qA2 NA NA chr7 17009240 AGCxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 132 0 0 31.05595 0.288889 0.02 -0.412129 32 13 895 366 60 60 0 0 CC 18.046426 60 0 1667 0 KEEP + Zc3h4 YES MNNG_2 chr7 17397025 17397025 G A exonic Fkrp nonsynonymous SNV NM_173430:c.C260T:p.P87L exonic Fkrp nonsynonymous SNV uc009fic.1:c.C260T:p.P87L exonic ENSMUSG00000048920 nonsynonymous SNV ENSMUST00000061390:c.C260T:p.P87L 7qA2 NA NA chr7 17397025 TAAxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 138 2 0 73.769187 0.583333 0.02 -0.42941 20 28 555 746 60 60 0 0 GG 17.134817 57 0 1594 0 KEEP - Fkrp YES MNNG_2 chr7 17502927 17502927 C T intronic Calm3 NA NA intronic Calm3 NA NA intronic ENSMUSG00000019370 NA NA 7qA2 NA NA chr7 17502927 GGGxACT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 182 2 0 111.357972 0.733333 0.02 1.064496 16 44 440 1057 60 60 0 0 CC 24.952721 83 0 2268 0 KEEP - Calm3 YES MNNG_2 chr7 17745138 17745138 C T exonic Ceacam3 synonymous SNV NM_054059:c.C1224T:p.L408L exonic NM_054059 synonymous SNV uc012fal.1:c.C1224T:p.L408L exonic ENSMUSG00000053228 synonymous SNV ENSMUST00000065540:c.C864T:p.L288L 7qA2 NA NA chr7 17745138 CCTxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 70 0 0 11.166212 0.227273 0.02 -0.200975 17 5 492 139 60 60 0 0 CC 12.332809 41 0 1152 0 KEEP + Ceacam3 YES MNNG_2 chr7 19477616 19477616 G A intronic Ccdc61 NA NA intronic Ccdc61 NA NA intronic ENSMUSG00000074358 NA NA 7qA3 NA NA chr7 19477616 CAAxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 139 0 0 100.922918 0.777778 0.02 -0.403332 10 35 293 946 60 60 0 0 GG 18.935536 63 0 1768 0 KEEP - Ccdc61 YES MNNG_2 chr7 19677087 19677087 G A exonic Dmpk nonsynonymous SNV NM_001190491:c.G1402A:p.V468I exonic Dmpk nonsynonymous SNV uc009fkq.2:c.G961A:p.V321I exonic ENSMUSG00000030409 nonsynonymous SNV ENSMUST00000032568:c.G1402A:p.V468I 7qA3 NA NA chr7 19677087 ACGxTAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 191 4 0 154.753507 0.610526 0.02 0.853557 37 58 1043 1547 60 60 0 0 GG 18.944164 63 0 1696 0 KEEP + Dmpk YES MNNG_2 chr7 20556912 20556912 G A exonic Ceacam20 nonsynonymous SNV NM_027839:c.G478A:p.E160K exonic Ceacam20 nonsynonymous SNV uc012fbl.1:c.G478A:p.E160K exonic ENSMUSG00000070777 nonsynonymous SNV ENSMUST00000094753:c.G478A:p.E160K 7qA3 NA NA chr7 20556912 GTGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 76 0 0 77.441591 0.7 0.02 -0.350212 12 28 330 747 60 60 0 0 GG 9.324741 31 0 871 0 KEEP + Ceacam20 YES MNNG_2 chr7 22055977 22055977 C T intergenic "Vmn1r124(dist=10341),Vmn1r125(dist=1221)" NA NA intergenic "Vmn1r124(dist=10341),Vmn1r125(dist=1221)" NA NA intergenic "ENSMUSG00000078410(dist=10341),ENSMUSG00000074325(dist=1221)" NA NA 7qA3 "Score=0.98;Name=No.99442,chr7:21552864" NA chr7 22055977 CATxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.04346 0.043787 0.99254 25 2 6 22.935027 1 0.02 -0.061385 0 7 0 196 0 60 0 0 CC 4.211677 14 0 402 0 KEEP NA Vmn1r124 YES MNNG_2 chr7 26094712 26094712 G A exonic Tmem145 stopgain SNV NM_183311:c.G1029A:p.W343X exonic Tmem145 stopgain SNV uc009fsi.1:c.G1029A:p.W343X exonic ENSMUSG00000043843 stopgain SNV ENSMUST00000058863:c.G1029A:p.W343X 7qA3 NA NA chr7 26094712 GTGxTTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 131 2 0 107.706529 0.791667 0.02 -0.429386 10 38 285 1003 60 60 0 0 GG 20.149762 67 0 1819 0 KEEP + Tmem145 YES MNNG_2 chr7 26115220 26115220 C T exonic Megf8 nonsynonymous SNV NM_001160400:c.C1169T:p.T390I exonic Megf8 nonsynonymous SNV uc009fsj.2:c.C1169T:p.T390I exonic ENSMUSG00000045039 nonsynonymous SNV ENSMUST00000128119:c.C1169T:p.T390I 7qA3 NA NA chr7 26115220 CCAxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 177 0 0 45.855276 0.265823 0.02 0.904723 58 21 1638 557 60 60 0 0 CC 22.244665 74 0 2050 0 KEEP + Megf8 YES MNNG_2 chr7 26127557 26127557 C T exonic Megf8 synonymous SNV NM_001160400:c.C3780T:p.F1260F exonic Megf8 synonymous SNV uc009fsj.2:c.C3780T:p.F1260F exonic ENSMUSG00000045039 synonymous SNV ENSMUST00000128119:c.C3780T:p.F1260F 7qA3 NA NA chr7 26127557 CTTxCGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979523 0.979526 0.999997 92 0 0 24.300244 0.2 0.02 1.204121 44 11 1267 310 60 60 0 0 CC 8.723808 29 0 827 0 KEEP + Megf8 YES MNNG_2 chr7 26482256 26482256 G A exonic Tgfb1 synonymous SNV NM_011577:c.G825A:p.R275R exonic Tgfb1 synonymous SNV uc009ftq.1:c.G825A:p.R275R exonic ENSMUSG00000002603 synonymous SNV ENSMUST00000002678:c.G825A:p.R275R 7qA3 NA NA chr7 26482256 ACGxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 192 6 0 139.281045 0.694444 0.02 1.144714 22 50 630 1347 60 60 0 0 GG 27.004461 90 0 2444 0 KEEP + Tgfb1 YES MNNG_2 chr7 27247500 27247500 C T exonic Nlrp4a synonymous SNV NM_172896:c.C2553T:p.D851D exonic Nlrp4a synonymous SNV uc012fgc.1:c.C2238T:p.D746D exonic ENSMUSG00000040601 synonymous SNV ENSMUST00000068767:c.C2553T:p.D851D 7qA3 NA NA chr7 27247500 GGAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139826 0.139832 0.999957 43 0 0 6.601426 0.25 0.02 -0.105227 9 3 253 81 60 60 0 0 CC 7.819037 26 0 701 0 KEEP + Nlrp4a YES MNNG_2 chr7 27914827 27914827 C T exonic Cyp2f2 nonsynonymous SNV NM_007817:c.C737T:p.A246V exonic Cyp2f2 nonsynonymous SNV uc009fuy.1:c.C737T:p.A246V exonic ENSMUSG00000052974 nonsynonymous SNV ENSMUST00000003100:c.C737T:p.A246V 7qA3 NA NA chr7 27914827 TTGxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 53 2 0 17.659809 0.347826 0.02 -0.201638 15 8 428 203 60 60 0 0 CC 6.917105 23 0 627 0 KEEP + Cyp2f2 YES MNNG_2 chr7 27938777 27938777 C T intronic Cyp2t4 NA NA intronic Cyp2t4 NA NA intronic ENSMUSG00000078787 NA NA 7qA3 NA NA chr7 27938777 TCTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 41 2 0 21.91413 0.533333 0.02 -0.131539 7 8 198 226 60 60 0 0 CC 4.812854 16 0 451 0 KEEP + Cyp2t4 YES MNNG_2 chr7 27949863 27949863 G A exonic Egln2 synonymous SNV NM_053208:c.C655T:p.L219L exonic Egln2 synonymous SNV uc009fva.2:c.C655T:p.L219L exonic ENSMUSG00000058709 synonymous SNV ENSMUST00000080058:c.C655T:p.L219L 7qA3 NA NA chr7 27949863 CCAxCAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 89 0 0 82.601906 0.725 0.02 -0.350731 11 29 315 790 60 60 0 0 GG 11.129465 37 0 1038 0 KEEP - Egln2 YES MNNG_2 chr7 28213202 28213202 C T splicing Sptbn4(NM_032610:exon6:c.590+1G>A) NA NA splicing Spnb4(uc009fwc.1:exon6:c.590+1G>A) NA NA splicing "ENSMUSG00000011751(ENSMUST00000011895:exon6:c.590+1G>A,ENSMUST00000172269:exon6:c.590+1G>A)" NA NA 7qA3 NA NA chr7 28213202 TCAxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 212 6 0 59.516745 0.337662 0.02 0.887147 51 26 1436 685 60 60 0 0 CC 25.861273 86 0 2332 0 KEEP - Sptbn4 YES MNNG_2 chr7 28705822 28705822 G A intronic 1700049G17Rik NA NA intronic 1700049G17Rik NA NA intronic ENSMUSG00000070709 NA NA 7qA3 NA NA chr7 28705822 AAAxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 164 6 4 48.943198 0.44186 0.02 -0.377083 24 19 689 527 60 60 0 0 GG 30.67572 102 0 2918 0 KEEP - 1700049G17Rik YES MNNG_2 chr7 28941757 28941757 C T exonic 9530053A07Rik synonymous SNV NM_001164655:c.C5949T:p.T1983T exonic 9530053A07Rik synonymous SNV uc009fxx.2:c.C5949T:p.T1983T exonic ENSMUSG00000078776 synonymous SNV ENSMUST00000150948:c.C5949T:p.T1983T 7qA3 NA NA chr7 28941757 CACxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 99 0 0 45.039776 0.387755 0.02 1.24825 30 19 851 502 60 60 0 0 CC 11.431479 38 0 1088 0 KEEP + 9530053A07Rik YES MNNG_2 chr7 29113802 29113802 G A intronic Supt5 NA NA intronic Supt5h NA NA intronic ENSMUSG00000003435 NA NA 7qA3 NA NA chr7 29113802 AGAxACA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 133 0 0 94.902396 0.702128 0.02 -0.42089 14 33 385 916 60 60 0 0 GG 22.836945 76 0 2121 0 KEEP - Supt5 YES MNNG_2 chr7 29149533 29149533 G A intronic Plekhg2 NA NA exonic Plekhg2 synonymous SNV uc009fyn.1:c.C1506T:p.P502P exonic ENSMUSG00000037552 synonymous SNV ENSMUST00000121085:c.C1506T:p.P502P 7qA3 NA NA chr7 29149533 TGGxGGA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 118 0 0 78.414594 0.636364 0.02 -0.394558 16 28 465 776 60 60 0 0 GG 19.539643 65 0 1801 0 KEEP - Plekhg2 YES MNNG_2 chr7 29399625 29399625 G A intronic Papl NA NA intronic C330005M16Rik NA NA intronic ENSMUSG00000037469 NA NA 7qA3 NA NA chr7 29399625 TGAxCGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 136 2 0 100.401895 0.627119 0.02 1.169258 22 37 614 997 60 60 0 0 GG 18.948914 63 0 1773 0 KEEP - Papl YES MNNG_2 chr7 29399995 29399995 C T splicing Papl(NM_175319:exon8:c.867-1G>A) NA NA splicing C330005M16Rik(uc009fzi.1:exon8:c.867-1G>A) NA NA splicing ENSMUSG00000037469(ENSMUST00000040112:exon8:c.867-1G>A) NA NA 7qA3 NA NA chr7 29399995 CAGxTAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 78 0 0 29.738754 0.387097 0.02 -0.271817 19 12 527 330 60 60 0 0 CC 12.933758 43 0 1196 0 KEEP - Papl YES MNNG_2 chr7 29400049 29400049 C T intronic Papl NA NA intronic C330005M16Rik NA NA intronic ENSMUSG00000037469 NA NA 7qA3 NA NA chr7 29400049 ATCxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 97 0 0 24.706007 0.322581 0.02 -0.280584 21 10 594 284 60 60 0 0 CC 16.819968 56 0 1539 0 KEEP - Papl YES MNNG_2 chr7 29400327 29400327 C T intronic Papl NA NA intronic C330005M16Rik NA NA intronic ENSMUSG00000037469 NA NA 7qA3 NA NA chr7 29400327 GGAxCGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.421506 0.423478 0.995343 36 0 0 8.170378 0.190476 0.02 -0.184133 17 4 471 107 60 60 0 0 CC 4.210263 14 0 377 0 KEEP - Papl YES MNNG_2 chr7 29679293 29679293 G A exonic Actn4 synonymous SNV NM_021895:c.C2694T:p.D898D exonic Actn4 synonymous SNV uc009gah.1:c.C2694T:p.D898D exonic ENSMUSG00000054808 synonymous SNV ENSMUST00000068045:c.C2694T:p.D898D 7qA3 NA NA chr7 29679293 GTAxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 138 1 0 147.963229 0.62069 0.02 0.923596 33 54 935 1473 60 60 0 0 GG 12.031412 40 0 1125 0 KEEP - Actn4 YES MNNG_2 chr7 29975346 29975346 G A exonic Catsperg1 synonymous SNV NM_001164658:c.C2190T:p.P730P exonic Catsperg1 synonymous SNV uc012fhe.1:c.C2190T:p.P730P exonic ENSMUSG00000049676 synonymous SNV ENSMUST00000047846:c.C2190T:p.P730P 7qB1 "Score=0.949074;Name=No.100321,chr7:30482305" NA chr7 29975346 AGTxGGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 105 0 0 76.431728 0.666667 0.02 -0.368261 14 28 404 747 60 60 0 0 GG 17.448231 58 0 1664 0 KEEP - Catsperg1 YES MNNG_2 chr7 30978018 30978018 C T intronic Capns1 NA NA intronic Capns1 NA NA intronic ENSMUSG00000001794 NA NA 7qB1 NA NA chr7 30978018 CTTxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 381 3 0 84.776354 0.281481 0.02 2.180747 97 38 2825 1015 60 60 0 0 CC 53.522856 178 0 4979 0 KEEP - Capns1 YES MNNG_2 chr7 30978954 30978954 C T exonic Capns1 nonsynonymous SNV NM_009795:c.G152A:p.G51D exonic Capns1 nonsynonymous SNV uc009gdr.1:c.G152A:p.G51D exonic ENSMUSG00000001794 nonsynonymous SNV ENSMUST00000126116:c.G152A:p.G51D 7qB1 NA NA chr7 30978954 CCAxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552881 0.552887 0.999988 66 3 0 10.953592 0.208333 0.02 -0.218827 19 5 556 139 60 60 0 0 CC 8.11575 27 0 729 0 KEEP - Capns1 YES MNNG_2 chr7 31086835 31086835 C T intronic Clip3 NA NA intronic Clip3 NA NA intronic ENSMUSG00000013921 NA NA 7qB1 NA NA chr7 31086835 CTGxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 264 2 0 78.881261 0.362637 0.02 0.898141 58 33 1589 890 60 60 0 0 CC 38.736999 129 0 3501 0 KEEP + Clip3 YES MNNG_2 chr7 31245643 31245643 C T exonic Nphs1 synonymous SNV NM_019459:c.C327T:p.H109H exonic Nphs1 synonymous SNV uc009gem.1:c.C285T:p.H95H exonic ENSMUSG00000006649 synonymous SNV ENSMUST00000006825:c.C327T:p.H109H 7qB1 NA NA chr7 31245643 CCAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 128 1 0 39.827347 0.298246 0.02 1.186623 40 17 1128 468 60 60 0 0 CC 15.636491 52 0 1419 0 KEEP + Nphs1 YES MNNG_2 chr7 31315031 31315031 G A exonic Arhgap33 nonsynonymous SNV NM_178252:c.C937T:p.L313F exonic Arhgap33 nonsynonymous SNV uc009ges.1:c.C865T:p.L289F exonic ENSMUSG00000036882 nonsynonymous SNV ENSMUST00000044338:c.C937T:p.L313F 7qB1 NA NA chr7 31315031 GGAxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.851978 0.851984 0.999992 82 2 0 61.456824 0.578947 0.02 -0.333251 16 22 468 622 60 60 0 0 GG 12.323691 41 0 1140 0 KEEP - Arhgap33 YES MNNG_2 chr7 31359257 31359257 C T splicing Kmt2b(NM_029274:exon30:c.6954-1G>A) NA NA splicing "Wbp7(uc009gfe.1:exon3:c.1029-1G>A,uc009gff.1:exon28:c.6420-1G>A,uc009gfg.1:exon30:c.6954-1G>A)" NA NA splicing "ENSMUSG00000006307(ENSMUST00000108154:exon30:c.6954-1G>A,ENSMUST00000006470:exon30:c.6981-1G>A,ENSMUST00000168395:exon30:c.5313-1G>A,ENSMUST00000131002:exon28:c.4856-1G>A)" NA NA 7qB1 NA NA chr7 31359257 AACxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 171 3 0 66.007847 0.304348 0.02 0.978217 64 28 1834 772 60 60 0 0 CC 19.252178 64 0 1819 0 KEEP - Kmt2b YES MNNG_2 chr7 31369792 31369792 C T exonic Kmt2b nonsynonymous SNV NM_029274:c.G2506A:p.G836R exonic Wbp7 nonsynonymous SNV uc009gff.1:c.G1945A:p.G649R exonic ENSMUSG00000006307 nonsynonymous SNV ENSMUST00000006470:c.G2506A:p.G836R 7qB1 NA NA chr7 31369792 TCCxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 264 0 0 59.496442 0.274725 0.02 0.995472 66 25 1914 708 60 60 0 0 CC 40.605058 135 0 3779 0 KEEP - Kmt2b YES MNNG_2 chr7 31442113 31442113 G A intronic Haus5 NA NA ncRNA_intronic 2310022K01Rik NA NA intronic ENSMUSG00000078762 NA NA 7qB1 NA NA chr7 31442113 GAAxGAC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 106 1 0 56.843417 0.625 0.02 -0.280602 12 20 334 565 60 60 0 0 GG 17.436445 58 0 1623 0 KEEP - Haus5 YES MNNG_2 chr7 3622679 3622679 G A exonic Tmc4 nonsynonymous SNV NM_181820:c.C1102T:p.P368S exonic Tmc4 nonsynonymous SNV uc009evn.1:c.C901T:p.P301S exonic ENSMUSG00000019734 nonsynonymous SNV ENSMUST00000121743:c.C901T:p.P301S 7qA1 NA NA chr7 3622679 GTGxGGT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.99986 49 0 0 21.728433 0.346154 0.02 -0.227262 17 9 464 247 60 60 0 0 GG 5.715215 19 0 533 0 KEEP - Tmc4 YES MNNG_2 chr7 36587975 36587975 C T ncRNA_exonic E130304I02Rik NA NA ncRNA_exonic E130304I02Rik NA NA exonic ENSMUSG00000044997 nonsynonymous SNV ENSMUST00000052454:c.C364T:p.P122S 7qB2 NA NA chr7 36587975 GCCxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 92 0 0 36.837708 0.619048 0.02 -0.184155 8 13 228 367 60 60 0 0 CC 17.340766 58 0 1512 0 KEEP - E130304I02Rik YES MNNG_2 chr7 3796246 3796246 A T intronic "Pira1,Pira11,Pira2,Pira4,Pira7" NA NA ncRNA_intronic Pirb NA NA intronic "ENSMUSG00000074417,ENSMUSG00000089942" NA NA 7qA1 "Score=0.991842;Name=No.96070,chr7:3667619" NA chr7 3796246 GACxCAG A T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 92 0 2 13.205871 1 0.02 -0.078918 0 4 0 113 0 29 0 0 AA 20.451414 68 0 1855 0 KEEP - Pira1 NO MNNG_2 chr7 39233158 39233158 C T intergenic "Pop4(dist=176791),Gm5591(dist=70000)" NA NA intergenic "AK005849(dist=4924),Gm5591(dist=70000)" NA NA intergenic "ENSMUSG00000070238(dist=67684),ENSMUSG00000060565(dist=70000)" NA NA 7qB2 "Score=0.968532;Name=No.101102,chr7:46605908" NA chr7 39233158 CTGxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 439 7 69 13.803205 0.081633 0.02 0.827218 90 8 2574 220 60 57 0 0 CC 78.812094 262 0 7424 0 KEEP NA Pop4 YES MNNG_2 chr7 4099776 4099776 C T downstream "Leng8,Leng9" NA NA downstream "Leng8,Leng9" NA NA downstream "ENSMUSG00000035545,ENSMUSG00000043432" NA NA 7qA1 NA NA chr7 4099776 GAAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 49 0 0 7.569012 0.285714 0.02 -0.122666 10 4 280 93 60 60 0 0 CC 8.720184 29 0 776 0 KEEP NA Leng8 YES MNNG_2 chr7 4650518 4650518 C T intronic Brsk1 NA NA intronic Brsk1 NA NA intronic ENSMUSG00000035390 NA NA 7qA1 NA NA chr7 4650518 CTCxAGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 134 0 0 52.644823 0.381818 0.02 1.31164 34 21 967 585 60 60 0 0 CC 18.349172 61 0 1720 0 KEEP + Brsk1 YES MNNG_2 chr7 46517672 46517672 C T ncRNA_exonic Gm21276 NA NA exonic Gm16387 nonsynonymous SNV uc009gky.1:c.G113A:p.S38N exonic ENSMUSG00000074169 nonsynonymous SNV ENSMUST00000098512:c.G113A:p.S38N 7qB3 "Score=0.936278;Name=No.101148,chr7:48236322" NA chr7 46517672 GCAxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 200 0 1 32.167113 0.214286 0.02 0.967345 55 15 1596 408 60 60 0 0 CC 28.274715 94 0 2658 0 KEEP - Gm21276 YES MNNG_2 chr7 48683373 48683373 A T exonic Vmn2r57 synonymous SNV NM_177764:c.T738A:p.I246I exonic Vmn2r57 synonymous SNV uc009vek.1:c.T738A:p.I246I exonic ENSMUSG00000066537 synonymous SNV ENSMUST00000165029:c.T738A:p.I246I 7qB3 NA NA chr7 48683373 AGGxATC A T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 70 0 0 31.908874 0.705882 0.02 -0.166264 5 12 136 307 60 60 0 0 AA 14.738239 49 0 1360 0 KEEP - Vmn2r57 NO MNNG_2 chr7 4870619 4870619 C T exonic Zfp628 synonymous SNV NM_170759:c.C237T:p.Y79Y exonic Zfp628 synonymous SNV uc009eyx.1:c.C237T:p.Y79Y exonic ENSMUSG00000074406 synonymous SNV ENSMUST00000098850:c.C216T:p.Y72Y 7qA1 NA NA chr7 4870619 CTAxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 255 2 0 73.168671 0.326531 0.02 0.827487 66 32 1840 848 60 60 0 0 CC 35.182775 117 0 3202 0 KEEP + Zfp628 YES MNNG_2 chr7 49120412 49120412 C T splicing Vmn2r58(NM_001105055:exon3:c.501+1G>A) NA NA splicing Vmn2r58(uc012fit.1:exon3:c.501+1G>A) NA NA splicing ENSMUSG00000090383(ENSMUST00000171671:exon3:c.501+1G>A) NA NA 7qB3 "Score=0.918859;Name=No.101197,chr7:48988564" NA chr7 49120412 TCAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 78 0 0 11.92271 0.357143 0.02 -0.122746 9 5 243 135 60 60 0 0 CC 16.513938 55 0 1474 0 KEEP - Vmn2r58 YES MNNG_2 chr7 51194915 51194915 C T exonic Klk15 synonymous SNV NM_174865:c.C720T:p.V240V exonic Klk15 synonymous SNV uc009gnz.1:c.C720T:p.V240V exonic ENSMUSG00000055193 synonymous SNV ENSMUST00000068625:c.C720T:p.V240V 7qB4 NA NA chr7 51194915 AGTxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 155 3 0 71.85014 0.509434 0.02 1.230989 26 27 739 749 60 60 0 0 CC 22.561455 75 0 2146 0 KEEP + Klk15 YES MNNG_2 chr7 51588649 51588649 C T intronic Shank1 NA NA intronic Shank1 NA NA intronic ENSMUSG00000038738 NA NA 7qB4 NA NA chr7 51588649 CCAxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 117 0 0 38.942256 0.309091 0.02 1.115153 38 17 1033 456 60 60 0 0 CC 14.435825 48 0 1308 0 KEEP + Shank1 YES MNNG_2 chr7 51797244 51797244 C T intronic Pold1 NA NA intronic Pold1 NA NA intronic ENSMUSG00000038644 NA NA 7qB4 NA NA chr7 51797244 ACCxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.481952 0.490544 0.982485 43 0 0 15.663591 0.318182 0.02 -0.201604 15 7 424 183 60 60 0 0 CC 5.685331 19 0 470 0 KEEP - Pold1 YES MNNG_2 chr7 52119974 52119974 C T intronic Ptov1 NA NA intronic Ptov1 NA NA intronic ENSMUSG00000038502 NA NA 7qB4 NA NA chr7 52119974 TGAxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 184 2 0 73.024267 0.375 0.02 0.976192 50 30 1421 817 60 60 0 0 CC 24.933526 83 0 2223 0 KEEP - Ptov1 YES MNNG_2 chr7 52811686 52811686 C T exonic Hsd17b14 nonsynonymous SNV NM_025330:c.C131T:p.A44V exonic Hsd17b14 nonsynonymous SNV uc012fkm.1:c.C131T:p.A44V exonic ENSMUSG00000030825 nonsynonymous SNV ENSMUST00000107752:c.C131T:p.A44V 7qB4 NA NA chr7 52811686 AGGxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 217 3 0 46.424399 0.238636 0.02 0.825661 67 21 1909 574 60 60 0 0 CC 27.050732 90 0 2490 0 KEEP + Hsd17b14 YES MNNG_2 chr7 52961182 52961182 C T intronic Dbp NA NA intronic Dbp NA NA intronic ENSMUSG00000059824 NA NA 7qB4 NA NA chr7 52961182 GGTxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 48 0 0 13.045182 0.416667 0.02 -0.10524 7 5 204 142 60 60 0 0 CC 8.723386 29 0 825 0 KEEP + Dbp YES MNNG_2 chr7 53050889 53050889 C T exonic Lmtk3 synonymous SNV NM_001005511:c.C3547T:p.L1183L exonic "Lmtk3,aatyk3" synonymous SNV uc009gxe.1:c.C3547T:p.L1183L exonic ENSMUSG00000062044 synonymous SNV ENSMUST00000120005:c.C3547T:p.L1183L 7qB4 NA NA chr7 53050889 TTCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 44 2 0 14.886768 0.333333 0.02 -0.157853 12 6 347 170 60 60 0 0 CC 5.113729 17 0 480 0 KEEP + Lmtk3 YES MNNG_2 chr7 53254409 53254409 C T exonic Abcc6 synonymous SNV NM_018795:c.G2028A:p.G676G exonic Abcc6 synonymous SNV uc009gya.1:c.G2028A:p.G676G exonic ENSMUSG00000030834 synonymous SNV ENSMUST00000002850:c.G2028A:p.G676G 7qB4 NA NA chr7 53254409 CTCxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119602 0.120436 0.993072 24 0 0 13.292922 0.454545 0.02 -0.096466 6 5 173 142 60 60 0 0 CC 3.308644 11 0 308 0 KEEP - Abcc6 YES MNNG_2 chr7 53944796 53944796 C T exonic Saal1 synonymous SNV NM_030233:c.G1362A:p.E454E exonic Saal1 synonymous SNV uc009gyu.2:c.G1362A:p.E454E exonic ENSMUSG00000006763 synonymous SNV ENSMUST00000143082:c.G1362A:p.E454E 7qB4 NA NA chr7 53944796 GACxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 197 0 0 33.918107 0.304348 0.02 -0.411504 32 14 896 395 60 60 0 0 CC 35.169028 117 0 3307 0 KEEP - Saal1 YES MNNG_2 chr7 54254287 54254287 C T exonic Spty2d1 nonsynonymous SNV NM_175318:c.G263A:p.R88K exonic Spty2d1 nonsynonymous SNV uc009gzx.2:c.G263A:p.R88K exonic ENSMUSG00000049516 nonsynonymous SNV ENSMUST00000061639:c.G263A:p.R88K 7qB4 NA NA chr7 54254287 GTCxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 163 2 0 22.217249 0.217391 0.02 -0.411986 36 10 1028 279 60 60 0 0 CC 31.27299 104 0 2932 0 KEEP - Spty2d1 YES MNNG_2 chr7 55454070 55454070 C T exonic Mrgprb4 nonsynonymous SNV NM_205795:c.G479A:p.G160E exonic Mrgprb4 nonsynonymous SNV uc009han.1:c.G479A:p.G160E exonic ENSMUSG00000070550 nonsynonymous SNV ENSMUST00000094388:c.G479A:p.G160E 7qB4 NA NA chr7 55454070 AGCxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12042 0.120436 0.999863 32 0 0 27.324818 0.818182 0.02 -0.09646 2 9 57 253 60 60 0 0 CC 6.015905 20 0 559 0 KEEP - Mrgprb4 YES MNNG_2 chr7 6467223 6467223 C T exonic Olfr1349 nonsynonymous SNV NM_207136:c.G916A:p.V306I exonic Olfr1349 nonsynonymous SNV uc009fbr.1:c.G916A:p.V306I exonic ENSMUSG00000048067 nonsynonymous SNV ENSMUST00000051982:c.G916A:p.V306I 7qA1 NA NA chr7 6467223 TGAxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 64 0 0 14.564887 0.375 0.02 -0.1403 10 6 281 163 60 60 0 0 CC 11.127049 37 0 1008 0 KEEP - Olfr1349 YES MNNG_2 chr7 6664387 6664387 C T exonic Peg3 synonymous SNV NM_008817:c.G546A:p.E182E exonic Peg3 synonymous SNV uc009fbw.1:c.G546A:p.E182E exonic ENSMUSG00000002265 synonymous SNV ENSMUST00000051209:c.G546A:p.E182E 7qA1 NA NA chr7 6664387 GTCxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 147 2 0 37.862226 0.365854 0.02 -0.359552 26 15 752 424 60 60 0 0 CC 25.266006 84 0 2366 0 KEEP - Peg3 YES MNNG_2 chr7 79818963 79818963 C T intergenic "Mctp2(dist=367482),Gm6567(dist=423675)" NA NA intergenic "Mctp2(dist=367482),DQ546052(dist=430294)" NA NA exonic ENSMUSG00000070035 synonymous SNV ENSMUST00000071888:c.C1158T:p.C386C 7qD1 NA NA chr7 79818963 ATGxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 231 3 0 49.4061 0.234043 0.02 0.863216 72 22 2008 611 60 60 0 0 CC 31.455026 105 0 2805 0 KEEP NA Mctp2 YES MNNG_2 chr7 86957703 86957703 C T UTR3 Mesp2 NA NA UTR3 Mesp2 NA NA UTR3 ENSMUSG00000030543 NA NA 7qD3 NA NA chr7 86957703 GGCxTTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612333 0.612407 0.999879 56 0 0 13.353139 0.222222 0.02 -0.236795 21 6 619 167 60 60 0 0 CC 6.618186 22 0 629 0 KEEP + Mesp2 YES MNNG_2 chr7 86979981 86979981 C T intronic Anpep NA NA intronic Anpep NA NA intronic ENSMUSG00000039062 NA NA 7qD3 NA NA chr7 86979981 AGTxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 141 1 0 37.632547 0.290909 0.02 1.212911 39 16 1114 444 60 60 0 0 CC 19.551426 65 0 1846 0 KEEP - Anpep YES MNNG_2 chr7 87226258 87226258 C T exonic Zfp710 nonsynonymous SNV NM_001145999:c.C296T:p.T99I exonic Zfp710 nonsynonymous SNV uc009hzi.2:c.C296T:p.T99I exonic ENSMUSG00000048897 nonsynonymous SNV ENSMUST00000049680:c.C296T:p.T99I 7qD3 NA NA chr7 87226258 AGAxACG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 62 0 0 19.257082 0.321429 0.02 -0.245451 19 9 528 226 60 60 0 0 CC 8.118887 27 0 749 0 KEEP + Zfp710 YES MNNG_2 chr7 90004792 90004792 A G intergenic "Eftud1(dist=78430),Mex3b(dist=11051)" NA NA ncRNA_intronic AK076849 NA NA exonic ENSMUSG00000030636 nonsynonymous SNV ENSMUST00000032872:c.A20G:p.Y7C 7qD3 NA NA chr7 90004792 CCTxCAA A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 81 0 0 6.973848 0.214286 0.02 -0.122732 11 3 288 87 60 60 0 0 AA 14.434685 48 0 1286 0 KEEP - Eftud1 NO MNNG_2 chr7 90745979 90745979 C T exonic Tmc3 synonymous SNV NM_177695:c.C417T:p.A139A exonic Tmc3 synonymous SNV uc009idn.1:c.C417T:p.A139A exonic ENSMUSG00000038540 synonymous SNV ENSMUST00000039317:c.C417T:p.A139A 7qD3 NA NA chr7 90745979 GGCxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 69 0 0 20.999317 0.421053 0.02 -0.16663 11 8 321 228 60 60 0 0 CC 9.925906 33 0 930 0 KEEP + Tmc3 YES MNNG_2 chr7 93561282 93561282 T C exonic Olfr301 nonsynonymous SNV NM_212436:c.T409C:p.W137R exonic Olfr301 nonsynonymous SNV uc009iez.1:c.T409C:p.W137R exonic ENSMUSG00000061549 nonsynonymous SNV ENSMUST00000073222:c.T412C:p.W138R 7qD3 NA NA chr7 93561282 CACxGGT T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 371 4 0 6.95335 1 0.02 -0.017542 0 2 0 60 0 20 0 0 TT 88.128756 293 0 8132 0 KEEP + Olfr301 NO MNNG_2 chr7 93561283 93561283 G A exonic Olfr301 stopgain SNV NM_212436:c.G410A:p.W137X exonic Olfr301 stopgain SNV uc009iez.1:c.G410A:p.W137X exonic ENSMUSG00000061549 stopgain SNV ENSMUST00000073222:c.G413A:p.W138X 7qD3 NA NA chr7 93561283 ACTxGTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 368 4 0 6.853261 1 0.02 -0.017541 0 2 0 59 0 20 0 0 GG 87.230065 290 0 8243 0 KEEP + Olfr301 YES MNNG_2 chr7 93675335 93675335 G A exonic Olfr297 nonsynonymous SNV NM_146618:c.G67A:p.V23I exonic Olfr297 nonsynonymous SNV uc009ifc.1:c.G67A:p.V23I exonic ENSMUSG00000057067 nonsynonymous SNV ENSMUST00000071112:c.G67A:p.V23I 7qD3 NA NA chr7 93675335 AGGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 169 5 0 6.432539 0.106383 0.02 -0.420252 42 5 1170 109 60 23 0 0 GG 30.379907 101 0 2820 0 KEEP + Olfr297 YES MNNG_2 chr7 93874461 93874461 T C exonic Folh1 nonsynonymous SNV NM_001159706:c.A1727G:p.Y576C exonic Folh1 nonsynonymous SNV uc012fop.1:c.A1727G:p.Y576C exonic ENSMUSG00000001773 nonsynonymous SNV ENSMUST00000107271:c.A1727G:p.Y576C 7qD3 NA NA chr7 93874461 GCAxACT T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999998 45 0 0 13.985655 0.625 0.02 -0.078913 3 5 80 139 60 60 0 0 TT 9.921562 33 0 864 0 KEEP - Folh1 NO MNNG_2 chr7 94444387 94444387 C T exonic Nox4 nonsynonymous SNV NM_015760:c.C247T:p.L83F exonic Nox4 nonsynonymous SNV uc009ifj.1:c.C247T:p.L83F exonic ENSMUSG00000030562 nonsynonymous SNV ENSMUST00000032781:c.C247T:p.L83F 7qD3 NA NA chr7 94444387 TATxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 100 4 0 10.980943 0.238095 0.02 -0.184165 16 5 469 136 60 60 0 0 CC 19.253527 64 0 1843 0 KEEP + Nox4 YES MNNG_2 chr8 107832670 107832670 G A exonic Elmo3 synonymous SNV NM_172760:c.G1497A:p.G499G exonic Elmo3 synonymous SNV uc009nco.2:c.G1074A:p.G358G exonic ENSMUSG00000014791 synonymous SNV ENSMUST00000093211:c.G1107A:p.G369G 8qD3 NA NA chr8 107832670 TGGxGAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926528 0.92664 0.999879 72 0 0 97.293115 0.755556 0.02 -0.394247 11 34 313 920 60 60 0 0 GG 6.617556 22 0 616 0 KEEP + Elmo3 YES MNNG_2 chr8 107879950 107879950 C T intronic Slc9a5 NA NA intronic Slc9a5 NA NA intronic ENSMUSG00000014786 NA NA 8qD3 NA NA chr8 107879950 AGGxAGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888837 0.888875 0.999957 71 0 0 42.619154 0.45 0.02 -0.359393 22 18 628 460 60 60 0 0 CC 7.82053 26 0 736 0 KEEP + Slc9a5 YES MNNG_2 chr8 108775140 108775140 C T exonic Prmt7 nonsynonymous SNV NM_145404:c.C1855T:p.L619F exonic Prmt7 nonsynonymous SNV uc009nfu.1:c.C1855T:p.L619F exonic ENSMUSG00000060098 nonsynonymous SNV ENSMUST00000071592:c.C1855T:p.L619F 8qD3 NA NA chr8 108775140 CAGxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 240 2 0 110.998775 0.381356 0.02 2.257821 73 45 2095 1236 60 60 0 0 CC 21.956857 73 0 2039 0 KEEP + Prmt7 YES MNNG_2 chr8 11008134 11008134 C T exonic Irs2 synonymous SNV NM_001081212:c.G297A:p.L99L exonic Irs2 synonymous SNV uc009kuz.1:c.G297A:p.L99L exonic ENSMUSG00000038894 synonymous SNV ENSMUST00000040514:c.G297A:p.L99L 8qA1.1 NA NA chr8 11008134 GTTxAGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739568 0.739671 0.99986 57 0 0 58.666918 0.65625 0.02 -0.280607 11 21 319 576 60 60 0 0 CC 5.715591 19 0 541 0 KEEP - Irs2 YES MNNG_2 chr8 112172318 112172318 C T intronic Pkd1l3 NA NA intronic Pkd1l3 NA NA intronic ENSMUSG00000048827 NA NA 8qD3 NA NA chr8 112172318 GCAxCGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 179 3 0 89.151925 0.395604 0.02 0.995808 55 36 1544 985 60 60 0 0 CC 22.850061 76 0 2070 0 KEEP + Pkd1l3 YES MNNG_2 chr8 112378925 112378925 C T exonic Ap1g1 nonsynonymous SNV NM_009677:c.C1924T:p.P642S exonic Ap1g1 nonsynonymous SNV uc012gkl.1:c.C1915T:p.P639S exonic ENSMUSG00000031731 nonsynonymous SNV ENSMUST00000034171:c.C1915T:p.P639S 8qD3 NA NA chr8 112378925 ACAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196285 0.196312 0.999863 37 0 0 21.161327 0.571429 0.02 -0.122755 6 8 167 215 60 60 0 0 CC 6.01548 20 0 553 0 KEEP + Ap1g1 YES MNNG_2 chr8 113251229 113251229 C T exonic Mtss1l nonsynonymous SNV NM_198625:c.C316T:p.P106S exonic Mtss1l nonsynonymous SNV uc009nkx.1:c.C316T:p.P106S exonic ENSMUSG00000033763 nonsynonymous SNV ENSMUST00000052457:c.C316T:p.P106S 8qE1 NA NA chr8 113251229 AATxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 129 2 0 45.502584 0.316667 0.02 1.267632 41 19 1166 527 60 60 0 0 CC 14.437677 48 0 1352 0 KEEP + Mtss1l YES MNNG_2 chr8 113266164 113266164 C T UTR3 Il34 NA NA UTR3 Il34 NA NA UTR3 ENSMUSG00000031750 NA NA 8qE1 NA NA chr8 113266164 GGTxAAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992923 0.992926 0.999997 105 0 0 44.642012 0.31746 0.02 1.134186 43 20 1188 522 60 60 0 0 CC 9.014621 30 0 827 0 KEEP - Il34 YES MNNG_2 chr8 113348108 113348108 C T exonic Sf3b3 nonsynonymous SNV NM_133953:c.G1823A:p.G608E exonic Sf3b3 nonsynonymous SNV uc009nlb.1:c.G1823A:p.G608E exonic ENSMUSG00000033732 nonsynonymous SNV ENSMUST00000042012:c.G1823A:p.G608E 8qE1 NA NA chr8 113348108 AGCxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.321674 0.322807 0.99649 40 0 0 21.145785 0.444444 0.02 -0.157844 10 8 285 227 60 60 0 0 CC 4.511346 15 0 415 0 KEEP - Sf3b3 YES MNNG_2 chr8 114061222 114061222 C T exonic Znrf1 nonsynonymous SNV NM_001168621:c.C182T:p.P61L exonic Znrf1 nonsynonymous SNV uc009nmk.2:c.C182T:p.P61L exonic ENSMUSG00000033545 nonsynonymous SNV ENSMUST00000095176:c.C182T:p.P61L 8qE1 NA NA chr8 114061222 ACCxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162445 0.162467 0.999863 43 2 0 19.898803 0.583333 0.02 -0.114004 5 7 142 201 60 60 0 0 CC 6.013548 20 0 537 0 KEEP + Znrf1 YES MNNG_2 chr8 114414820 114414820 C T exonic Chst5 nonsynonymous SNV NM_019950:c.G67A:p.V23I exonic Chst5 nonsynonymous SNV uc009nmz.1:c.G67A:p.V23I exonic ENSMUSG00000031952 nonsynonymous SNV ENSMUST00000034430:c.G67A:p.V23I 8qE1 NA NA chr8 114414820 AGAxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 290 4 0 127.831745 0.350649 0.02 3.825071 100 54 2810 1454 60 60 0 0 CC 30.322681 101 0 2750 0 KEEP - Chst5 YES MNNG_2 chr8 11446003 11446003 C T exonic Col4a2 synonymous SNV NM_009932:c.C4623T:p.F1541F exonic Col4a2 synonymous SNV uc009kvc.2:c.C4623T:p.F1541F exonic ENSMUSG00000031503 synonymous SNV ENSMUST00000033899:c.C4623T:p.F1541F 8qA1.1 NA NA chr8 11446003 TTTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 153 0 0 48.309758 0.25 0.02 0.958597 63 21 1807 588 60 60 0 0 CC 15.34175 51 0 1449 0 KEEP + Col4a2 YES MNNG_2 chr8 11509287 11509287 C T intronic Carkd NA NA intronic Carkd NA NA intronic ENSMUSG00000031505 NA NA 8qA1.1 NA NA chr8 11509287 TTGxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 115 1 0 56.101184 0.410714 0.02 1.097584 33 23 927 616 60 60 0 0 CC 12.629988 42 0 1139 0 KEEP + Carkd YES MNNG_2 chr8 120103625 120103625 G A intronic Plcg2 NA NA intronic Plcg2 NA NA intronic ENSMUSG00000034330 NA NA 8qE1 NA NA chr8 120103625 GTAxACT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 35 0 0 30.54956 0.647059 0.02 -0.149073 6 11 175 301 60 60 0 0 GG 4.211473 14 0 400 0 KEEP + Plcg2 YES MNNG_2 chr8 120807728 120807728 C T UTR5 Cdh13 NA NA UTR5 Cdh13 NA NA UTR5 ENSMUSG00000031841 NA NA 8qE1 NA NA chr8 120807728 CCGxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 126 0 0 100.480601 0.627119 0.02 1.170808 22 37 590 997 60 60 0 0 CC 12.933728 43 0 1194 0 KEEP + Cdh13 YES MNNG_2 chr8 122280041 122280041 C T intronic Atp2c2 NA NA intronic Atp2c2 NA NA intronic ENSMUSG00000034112 NA NA 8qE1 NA NA chr8 122280041 TGGxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.832783 0.835716 0.99649 59 2 0 34.660056 0.4 0.02 -0.324046 21 14 592 382 60 60 0 0 CC 4.512203 15 0 425 0 KEEP + Atp2c2 YES MNNG_2 chr8 122398310 122398310 C T exonic Klhl36 synonymous SNV NM_146219:c.C1167T:p.Y389Y exonic Klhl36 synonymous SNV uc009nqm.1:c.C1167T:p.Y389Y exonic ENSMUSG00000031828 synonymous SNV ENSMUST00000034287:c.C1167T:p.Y389Y 8qE1 NA NA chr8 122398310 CTAxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 172 1 0 52.418254 0.315068 0.02 0.939717 50 23 1408 612 60 60 0 0 CC 23.366294 78 0 2078 0 KEEP + Klhl36 YES MNNG_2 chr8 124057547 124057547 C T intronic 1700018B08Rik NA NA intronic 1700018B08Rik NA NA intronic "ENSMUSG00000031809,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 124057547 GTCxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.384582 0.387407 0.992708 32 0 0 21.500328 0.421053 0.02 -0.175389 11 8 311 233 60 60 0 0 CC 3.004774 10 0 255 0 KEEP - 1700018B08Rik YES MNNG_2 chr8 127977446 127977446 C T exonic Sipa1l2 synonymous SNV NM_001081337:c.G3111A:p.E1037E exonic Sipa1l2 synonymous SNV uc009nye.1:c.G3111A:p.E1037E exonic ENSMUSG00000001995 synonymous SNV ENSMUST00000047850:c.G3111A:p.E1037E 8qE2 NA NA chr8 127977446 GAGxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999108 0.99911 0.999998 121 0 0 90.834476 0.443038 0.02 1.002458 44 35 1274 977 60 60 0 0 CC 9.902608 33 0 916 0 KEEP - Sipa1l2 YES MNNG_2 chr8 12844683 12844683 C T intronic Atp11a NA NA intronic Atp11a NA NA intronic ENSMUSG00000031441 NA NA 8qA1.1 NA NA chr8 12844683 GGGxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.908941 0.909069 0.999859 77 0 0 25.531756 0.255814 0.02 -0.377065 32 11 906 309 60 60 0 0 CC 5.413304 18 0 499 0 KEEP + Atp11a YES MNNG_2 chr8 13115578 13115578 C T intronic Cul4a NA NA intronic Cul4a NA NA intronic ENSMUSG00000031446 NA NA 8qA1.1 NA NA chr8 13115578 TATxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 92 0 0 67.152084 0.6 0.02 -0.350771 16 24 457 674 60 60 0 0 CC 11.126138 37 0 1028 0 KEEP + Cul4a YES MNNG_2 chr8 13742671 13742671 C T UTR3 4932443I19Rik NA NA UTR3 4932443I19Rik NA NA UTR3 ENSMUSG00000090336 NA NA 8qA1.1 NA NA chr8 13742671 GGCxACA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 118 2 0 81.376648 0.574074 0.02 1.311296 23 31 663 826 60 60 0 0 CC 12.630058 42 0 1185 0 KEEP + 4932443I19Rik YES MNNG_2 chr8 15084611 15084611 C T exonic Myom2 synonymous SNV NM_008664:c.C1413T:p.I471I exonic Myom2 synonymous SNV uc009kzm.2:c.C1413T:p.I471I exonic ENSMUSG00000031461 synonymous SNV ENSMUST00000033842:c.C1413T:p.I471I 8qA1.1 NA NA chr8 15084611 GATxTCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 119 3 0 70.287378 0.530612 0.02 -0.438463 23 26 661 726 60 60 0 0 CC 14.439826 48 0 1375 0 KEEP + Myom2 YES MNNG_2 chr8 16288707 16288707 C T exonic Csmd1 nonsynonymous SNV NM_053171:c.G1385A:p.G462E exonic Csmd1 nonsynonymous SNV uc009kzp.1:c.G1385A:p.G462E exonic ENSMUSG00000060924 nonsynonymous SNV ENSMUST00000110789:c.G290A:p.G97E 8qA1.2 NA NA chr8 16288707 TACxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 241 0 0 82.404117 0.382022 0.02 1.013183 55 34 1579 919 60 60 0 0 CC 33.666166 112 0 3092 0 KEEP - Csmd1 YES MNNG_2 chr8 16698087 16698087 C T exonic Csmd1 nonsynonymous SNV NM_053171:c.G647A:p.S216N exonic Csmd1 nonsynonymous SNV uc009kzp.1:c.G647A:p.S216N exonic ENSMUSG00000060924 nonsynonymous SNV ENSMUST00000082104:c.G647A:p.S216N 8qA1.2 NA NA chr8 16698087 CCGxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351961 0.353947 0.994391 43 2 0 21.265919 0.473684 0.02 -0.166404 10 9 282 227 60 60 0 0 CC 3.898448 13 0 350 0 KEEP - Csmd1 YES MNNG_2 chr8 26130984 26130984 C T exonic Tm2d2 nonsynonymous SNV NM_027194:c.C386T:p.A129V exonic Tm2d2 nonsynonymous SNV uc009lfn.2:c.C386T:p.A129V exonic ENSMUSG00000031556 nonsynonymous SNV ENSMUST00000033961:c.C386T:p.A129V 8qA2 NA NA chr8 26130984 GTGxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 72 0 0 12.702897 0.25 0.02 -0.210423 18 6 508 157 60 60 0 0 CC 11.729211 39 0 1078 0 KEEP + Tm2d2 YES MNNG_2 chr8 26950309 26950309 C T exonic Ash2l nonsynonymous SNV NM_001080793:c.G25A:p.D9N exonic Ash2l nonsynonymous SNV uc009lhc.1:c.G292A:p.D98N exonic ENSMUSG00000031575 nonsynonymous SNV ENSMUST00000110608:c.G25A:p.D9N 8qA2 NA NA chr8 26950309 CATxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 282 5 0 153.048971 0.595745 0.02 0.870924 38 56 1114 1539 60 60 0 0 CC 34.593854 115 0 3267 0 KEEP - Ash2l YES MNNG_2 chr8 27007102 27007102 C T exonic Kcnu1 stopgain SNV NM_008432:c.C1540T:p.Q514X exonic Kcnu1 stopgain SNV uc009lhe.1:c.C1540T:p.Q514X exonic ENSMUSG00000031576 stopgain SNV ENSMUST00000098858:c.C1540T:p.Q514X 8qA2 NA NA chr8 27007102 TGGxAAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 140 0 0 22.692986 0.285714 0.02 -0.306139 25 10 691 270 60 60 0 0 CC 22.25941 74 0 2084 0 KEEP + Kcnu1 YES MNNG_2 chr8 28504308 28504308 C T exonic Chrnb3 synonymous SNV NM_027454:c.C555T:p.D185D exonic Chrnb3 synonymous SNV uc009liu.2:c.C555T:p.D185D exonic ENSMUSG00000031492 synonymous SNV ENSMUST00000079463:c.C555T:p.D185D 8qA2 NA NA chr8 28504308 AGAxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.963774 0.963774 1 126 0 0 81.294664 0.588235 0.02 1.248019 21 30 601 820 60 60 0 0 CC 17.433765 58 0 1614 0 KEEP + Chrnb3 YES MNNG_2 chr8 29834897 29834897 G A intronic Unc5d NA NA intronic Unc5d NA NA exonic ENSMUSG00000063626 nonsynonymous SNV ENSMUST00000168630:c.C1021T:p.L341F 8qA2 NA NA chr8 29834897 GAAxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.99986 51 0 0 41.720054 0.571429 0.02 -0.254182 12 16 320 424 60 60 0 0 GG 5.714522 19 0 523 0 KEEP - Unc5d YES MNNG_2 chr8 34391315 34391315 G A exonic Wrn synonymous SNV NM_001122822:c.C2791T:p.L931L exonic Wrn synonymous SNV uc012gcc.1:c.C2062T:p.L688L exonic ENSMUSG00000031583 synonymous SNV ENSMUST00000033991:c.C1771T:p.L591L 8qA4 NA NA chr8 34391315 GTAxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322777 0.322807 0.999909 49 0 0 20.64665 0.444444 0.02 -0.157807 10 8 281 222 60 60 0 0 GG 7.210567 24 0 673 0 KEEP - Wrn YES MNNG_2 chr8 3538103 3538103 C T intronic Pnpla6 NA NA exonic Pnpla6 nonsynonymous SNV uc009krt.1:c.C3385T:p.H1129Y intronic ENSMUSG00000004565 NA NA 8qA1.1 NA NA chr8 3538103 ACTxACA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999997 83 0 0 40.317155 0.414634 0.02 -0.376911 24 17 678 443 60 60 0 0 CC 9.626557 32 0 917 0 KEEP + Pnpla6 YES MNNG_2 chr8 37209424 37209424 C T exonic D8Ertd82e synonymous SNV NM_172911:c.C3075T:p.I1025I exonic D8Ertd82e synonymous SNV uc009llf.2:c.C3075T:p.I1025I exonic ENSMUSG00000050271 synonymous SNV ENSMUST00000060045:c.C2490T:p.I830I 8qA4 NA NA chr8 37209424 CATxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 304 0 0 186.758129 0.545455 0.02 2.233704 60 72 1694 1920 60 60 0 0 CC 40.304017 134 0 3761 0 KEEP + D8Ertd82e YES MNNG_2 chr8 38626371 38626371 C T intronic Sgcz NA NA intronic Sgcz NA NA intronic ENSMUSG00000039539 NA NA 8qA4 NA NA chr8 38626371 TAGxATA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 111 2 0 28.63725 0.352941 0.02 -0.31568 22 12 631 325 70 70 0 0 CC 17.448609 58 0 1672 0 KEEP - Sgcz YES MNNG_2 chr8 40693513 40693513 C T intronic Msr1 NA NA intronic Msr1 NA NA intronic ENSMUSG00000025044 NA NA 8qA4 NA NA chr8 40693513 CAGxAAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 126 0 0 27.632145 0.387097 0.02 -0.271753 19 12 542 309 60 60 0 0 CC 24.668341 82 0 2356 0 KEEP - Msr1 YES MNNG_2 chr8 4216503 4216503 G C exonic BC068157 nonsynonymous SNV NM_207203:c.C46G:p.P16A exonic BC068157 nonsynonymous SNV uc012fzb.1:c.C46G:p.P16A exonic ENSMUSG00000064125 nonsynonymous SNV ENSMUST00000070717:c.C46G:p.P16A 8qA1.1 NA NA chr8 4216503 ACGxCAT G C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 137 2 0 34.360385 0.205479 0.02 1.153364 58 15 1649 433 60 60 0 0 GG 12.278158 41 0 1094 0 KEEP - BC068157 NO MNNG_2 chr8 44606795 44606795 G A exonic Adam26b stopgain SNV NM_001009547:c.C523T:p.R175X exonic Adam26b stopgain SNV uc009loe.1:c.C523T:p.R175X exonic ENSMUSG00000063900 stopgain SNV ENSMUST00000080135:c.C523T:p.R175X 8qA4 "Score=0.906139;Name=No.104123,chr8:44735926" NA chr8 44606795 CTCxTAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 263 1 0 122.340659 0.628571 0.02 1.08301 26 44 590 1213 60 60 0 0 GG 51.910943 173 0 4084 0 KEEP - Adam26b YES MNNG_2 chr8 46109951 46109951 G A exonic Fat1 nonsynonymous SNV NM_001081286:c.G6610A:p.V2204I exonic Fat1 nonsynonymous SNV uc009lon.2:c.G6610A:p.V2204I exonic ENSMUSG00000070047 nonsynonymous SNV ENSMUST00000093529:c.G6610A:p.V2204I 8qB1.1 NA NA chr8 46109951 GTGxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 111 2 0 78.422817 0.682927 0.02 -0.359511 13 28 369 762 60 60 0 0 GG 16.530013 55 0 1498 0 KEEP + Fat1 YES MNNG_2 chr8 48271787 48271787 C T exonic Stox2 nonsynonymous SNV NM_001114311:c.G2725A:p.A909T exonic Stox2 nonsynonymous SNV uc009lqx.2:c.G2725A:p.A909T exonic ENSMUSG00000038143 nonsynonymous SNV ENSMUST00000079195:c.G2725A:p.A909T 8qB1.1 NA NA chr8 48271787 CAGxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 62 0 0 11.269737 0.3125 0.02 -0.140294 11 5 306 132 60 60 0 0 CC 11.730448 39 0 1083 0 KEEP - Stox2 YES MNNG_2 chr8 58352082 58352082 G A exonic Adam29 nonsynonymous SNV NM_175939:c.C133T:p.P45S exonic Adam29 nonsynonymous SNV uc009lsm.2:c.C133T:p.P45S exonic ENSMUSG00000046258 nonsynonymous SNV ENSMUST00000053441:c.C133T:p.P45S 8qB2 NA NA chr8 58352082 TGGxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.228106 0.229173 0.995343 34 0 0 25.30707 0.6 0.02 -0.131543 6 9 172 254 60 60 0 0 GG 4.211535 14 0 399 0 KEEP - Adam29 YES MNNG_2 chr8 63420088 63420088 C T exonic Clcn3 nonsynonymous SNV NM_007711:c.G110A:p.R37Q exonic "CLCN3,Clcn3" nonsynonymous SNV uc009ltk.2:c.G203A:p.R68Q exonic ENSMUSG00000004319 nonsynonymous SNV ENSMUST00000056508:c.G203A:p.R68Q 8qB3.1 NA NA chr8 63420088 TCTxGCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 167 0 0 59.643234 0.55 0.02 -0.359406 18 22 446 611 60 60 0 0 CC 30.019926 100 0 2573 0 KEEP - Clcn3 YES MNNG_2 chr8 66496351 66496351 C T exonic Tll1 nonsynonymous SNV NM_009390:c.G2834A:p.G945D exonic Tll1 nonsynonymous SNV uc009lut.1:c.G2834A:p.G945D exonic ENSMUSG00000053626 nonsynonymous SNV ENSMUST00000066166:c.G2834A:p.G945D 8qB3.1 NA NA chr8 66496351 TAGxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 192 2 0 59.127837 0.357143 0.02 0.975633 45 25 1214 670 60 60 0 0 CC 32.429168 108 0 2909 0 KEEP - Tll1 YES MNNG_2 chr8 66530261 66530261 C T exonic Tll1 nonsynonymous SNV NM_009390:c.G1897A:p.G633S exonic Tll1 nonsynonymous SNV uc009lut.1:c.G1897A:p.G633S exonic ENSMUSG00000053626 nonsynonymous SNV ENSMUST00000066166:c.G1897A:p.G633S 8qB3.1 NA NA chr8 66530261 AGCxGGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229148 0.229173 0.999892 42 0 0 15.078303 0.4 0.02 -0.131513 9 6 244 166 60 60 0 0 CC 6.858936 23 0 505 0 KEEP - Tll1 YES MNNG_2 chr8 67085531 67085531 C T exonic Cpe nonsynonymous SNV NM_013494:c.G982A:p.D328N exonic Cpe nonsynonymous SNV uc009luw.1:c.G982A:p.D328N exonic ENSMUSG00000037852 nonsynonymous SNV ENSMUST00000048967:c.G982A:p.D328N 8qB3.1 NA NA chr8 67085531 AGTxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 70 4 0 52.345108 0.782609 0.02 -0.210436 5 18 149 490 60 60 0 0 CC 10.212852 34 0 961 0 KEEP - Cpe YES MNNG_2 chr8 70025361 70025361 C T exonic Nat2 synonymous SNV NM_001168577:c.C223T:p.L75L exonic Nat2 synonymous SNV uc009lvw.2:c.C223T:p.L75L exonic ENSMUSG00000051147 synonymous SNV ENSMUST00000093470:c.C223T:p.L75L 8qB3.3 NA NA chr8 70025361 CTGxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 73 4 0 32.434694 0.448276 0.02 -0.254295 16 13 467 349 60 60 0 0 CC 10.227596 34 0 963 0 KEEP + Nat2 YES MNNG_2 chr8 72588913 72588913 C T exonic Sugp1 synonymous SNV NM_027481:c.C1053T:p.C351C exonic Sugp1 synonymous SNV uc009lyn.1:c.C1041T:p.C347C exonic ENSMUSG00000011306 synonymous SNV ENSMUST00000011450:c.C1053T:p.C351C 8qB3.3 NA NA chr8 72588913 CTGxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 154 0 0 125.891213 0.539326 0.02 1.013349 41 48 1169 1297 60 60 0 0 CC 12.918317 43 0 1180 0 KEEP + Sugp1 YES MNNG_2 chr8 72625823 72625823 G T exonic Ncan nonsynonymous SNV NM_007789:c.C3242A:p.P1081Q exonic Ncan nonsynonymous SNV uc009lys.2:c.C3242A:p.P1081Q exonic ENSMUSG00000002341 nonsynonymous SNV ENSMUST00000002412:c.C3242A:p.P1081Q 8qB3.3 NA NA chr8 72625823 TCTxGCG G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 168 4 0 76.939475 0.410959 0.02 1.03752 43 30 1249 841 60 60 0 0 GG 21.357679 71 0 2022 0 KEEP - Ncan NO MNNG_2 chr8 72701110 72701110 C T intronic Tmem161a NA NA intronic Tmem161a NA NA intronic ENSMUSG00000002342 NA NA 8qB3.3 NA NA chr8 72701110 CGAxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 146 2 0 75.047672 0.390244 0.02 0.861592 50 32 1353 836 60 60 0 0 CC 15.637184 52 0 1409 0 KEEP + Tmem161a YES MNNG_2 chr8 73313895 73313895 C T splicing Mast3(NM_199308:exon3:c.178+1G>A) NA NA splicing "Mast3(uc009mbp.2:exon3:c.178+1G>A,uc009mbq.1:exon4:c.226+1G>A)" NA NA splicing "ENSMUSG00000031833(ENSMUST00000166004:exon3:c.178+1G>A,ENSMUST00000037986:exon4:c.226+1G>A)" NA NA 8qB3.3 NA NA chr8 73313895 TCAxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 465 1 0 205.769473 0.381166 0.02 4.995815 138 85 3912 2296 60 60 0 0 CC 51.619137 172 0 4685 0 KEEP - Mast3 YES MNNG_2 chr8 74048059 74048059 C T intergenic "Plvap(dist=12391),Bst2(dist=10102)" NA NA intronic AK141396 NA NA ncRNA_exonic ENSMUSG00000092037 NA NA 8qB3.3 "Score=0.972463;Name=No.88547,chr4:133156474" NA chr8 74048059 AGAxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760805 0.760887 0.999892 57 0 0 28.927514 0.363636 0.02 -0.289357 21 12 613 326 60 60 0 0 CC 6.918122 23 0 642 0 KEEP - Plvap YES MNNG_2 chr8 74236006 74236006 C T exonic Fcho1 nonsynonymous SNV NM_028715:c.G1529A:p.R510K exonic Fcho1 nonsynonymous SNV uc009met.2:c.G1529A:p.R510K exonic ENSMUSG00000070000 nonsynonymous SNV ENSMUST00000093444:c.G1529A:p.R510K 8qB3.3 NA NA chr8 74236006 CCCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996655 0.996724 0.999931 110 2 0 132.588342 0.681159 0.02 1.18021 22 47 623 1290 60 60 0 0 CC 7.45798 25 0 680 0 KEEP - Fcho1 YES MNNG_2 chr8 74240560 74240560 C T exonic Fcho1 nonsynonymous SNV NM_028715:c.G490A:p.A164T exonic Fcho1 nonsynonymous SNV uc009meu.1:c.G340A:p.A114T exonic ENSMUSG00000070000 nonsynonymous SNV ENSMUST00000098632:c.G490A:p.A164T 8qB3.3 NA NA chr8 74240560 CTGxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 94 0 0 72.875065 0.55102 0.02 -0.428951 22 27 606 746 60 60 0 0 CC 12.332201 41 0 1142 0 KEEP - Fcho1 YES MNNG_2 chr8 74436936 74436936 C T intronic Zfp882 NA NA intronic Zfp882 NA NA intronic "ENSMUSG00000066880,ENSMUSG00000089857" NA NA 8qB3.3 NA NA chr8 74436936 ACAxAGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196303 0.196312 0.999957 43 0 0 11.822675 0.357143 0.02 -0.122743 9 5 241 134 60 60 0 0 CC 7.818724 26 0 703 0 KEEP + Zfp882 YES MNNG_2 chr8 75219352 75219352 C T exonic Nwd1 synonymous SNV NM_176940:c.C3126T:p.S1042S exonic Nwd1 synonymous SNV uc009mgn.2:c.C2646T:p.S882S exonic ENSMUSG00000048148 synonymous SNV ENSMUST00000093427:c.C3126T:p.S1042S 8qB3.3 NA NA chr8 75219352 CAGxATC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 83 2 0 28.10475 0.324324 0.02 -0.324256 25 12 702 325 60 60 0 0 CC 10.827978 36 0 1023 0 KEEP + Nwd1 YES MNNG_2 chr8 77584303 77584303 C T intronic Tom1 NA NA exonic Tom1 synonymous SNV uc009mhb.2:c.C27T:p.G9G intronic ENSMUSG00000042870 NA NA 8qC1 NA NA chr8 77584303 AGGxCTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 175 1 0 77.287883 0.462687 0.02 1.206117 36 31 1017 826 60 60 0 0 CC 21.293208 71 0 1949 0 KEEP + Tom1 YES MNNG_2 chr8 86196213 86196213 C T exonic Pkn1 synonymous SNV NM_001199593:c.G2022A:p.R674R exonic Pkn1 synonymous SNV uc009mkv.2:c.G15A:p.R5R exonic ENSMUSG00000057672 synonymous SNV ENSMUST00000005616:c.G2007A:p.R669R 8qC2 NA NA chr8 86196213 AATxCGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 52 0 0 35.209799 0.541667 0.02 -0.210468 11 13 319 362 60 60 0 0 CC 5.715345 19 0 536 0 KEEP - Pkn1 YES MNNG_2 chr8 86201418 86201418 C T intronic Pkn1 NA NA intronic Pkn1 NA NA intronic ENSMUSG00000057672 NA NA 8qC2 NA NA chr8 86201418 ACAxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 144 2 0 94.665941 0.493333 0.02 0.949909 38 37 1064 996 70 60 0 0 CC 14.135553 47 0 1287 0 KEEP - Pkn1 YES MNNG_2 chr8 86252238 86252238 C T exonic Cd97 synonymous SNV NM_001163029:c.G729A:p.R243R exonic Cd97 synonymous SNV uc009mld.2:c.G729A:p.R243R exonic ENSMUSG00000002885 synonymous SNV ENSMUST00000002964:c.G729A:p.R243R 8qC2 NA NA chr8 86252238 GGTxCGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 195 1 0 97.35947 0.40625 0.02 0.952403 57 39 1589 1069 60 60 0 0 CC 22.554144 75 0 2074 0 KEEP - Cd97 YES MNNG_2 chr8 87361852 87361852 C T intronic Rad23a NA NA intronic Rad23a NA NA intronic ENSMUSG00000003813 NA NA 8qC3 NA NA chr8 87361852 TGCxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999861 0.99993 0.999931 124 0 0 144.2589 0.56383 0.02 0.952208 41 53 1177 1470 60 60 0 0 CC 7.51983 25 0 699 0 KEEP - Rad23a YES MNNG_2 chr8 87416379 87416379 C T exonic Gcdh nonsynonymous SNV NM_008097:c.G454A:p.V152I exonic Gcdh nonsynonymous SNV uc009mny.1:c.G427A:p.V143I exonic ENSMUSG00000003809 nonsynonymous SNV ENSMUST00000003907:c.G427A:p.V143I 8qC3 NA NA chr8 87416379 GAAxACT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 50 0 0 53.070601 0.76 0.02 -0.219169 6 19 161 500 60 60 0 0 CC 5.413779 18 0 500 0 KEEP - Gcdh YES MNNG_2 chr8 87447900 87447900 C T intronic Mast1 NA NA intronic Mast1 NA NA intronic ENSMUSG00000053693 NA NA 8qC3 NA NA chr8 87447900 CCTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 328 5 0 169.590309 0.581197 0.02 2.34131 49 68 1414 1720 60 60 0 0 CC 46.849556 156 0 4337 0 KEEP - Mast1 YES MNNG_2 chr8 87495515 87495515 C T exonic Prdx2 synonymous SNV NM_011563:c.C435T:p.D145D exonic Prdx2 synonymous SNV uc009mon.1:c.C435T:p.D145D exonic ENSMUSG00000005161 synonymous SNV ENSMUST00000125893:c.C435T:p.D145D 8qC3 NA NA chr8 87495515 TGAxCTA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 81 0 2 65.55419 0.615385 0.02 -0.341986 15 24 435 654 60 60 0 0 CC 8.41232 28 0 758 0 KEEP + Prdx2 YES MNNG_2 chr8 87575404 87575404 C T intronic Tnpo2 NA NA intronic Tnpo2 NA NA intronic ENSMUSG00000031691 NA NA 8qC3 NA NA chr8 87575404 CAGxACT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 320 1 0 191.254294 0.636364 0.02 2.203902 40 70 1138 1892 60 60 0 0 CC 51.111602 170 0 4699 0 KEEP + Tnpo2 YES MNNG_2 chr8 87754738 87754738 C T exonic Olfr371 synonymous SNV NM_146859:c.C343T:p.L115L exonic Olfr371 synonymous SNV uc009mpn.1:c.C343T:p.L115L exonic ENSMUSG00000051952 synonymous SNV ENSMUST00000070849:c.C343T:p.L115L 8qC3 NA NA chr8 87754738 CTTxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 101 0 0 73.654915 0.574468 0.02 -0.420843 20 27 574 747 60 60 0 0 CC 15.041361 50 0 1434 0 KEEP + Olfr371 YES MNNG_2 chr8 95425818 95425818 C T exonic Capns2 synonymous SNV NM_027112:c.C435T:p.Y145Y exonic Capns2 synonymous SNV uc012gik.1:c.C435T:p.Y145Y exonic ENSMUSG00000078144 synonymous SNV ENSMUST00000104947:c.C435T:p.Y145Y 8qC5 NA NA chr8 95425818 GTAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 118 0 0 57.376693 0.442308 0.02 1.132955 29 23 788 619 60 60 0 0 CC 15.937928 53 0 1430 0 KEEP + Capns2 YES MNNG_2 chr9 100896032 100896032 G A exonic Pccb synonymous SNV NM_025835:c.C837T:p.F279F exonic Pccb synonymous SNV uc009rfd.1:c.C726T:p.F242F exonic ENSMUSG00000032527 synonymous SNV ENSMUST00000142676:c.C717T:p.F239F 9qE4 NA NA chr9 100896032 CAGxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120013 0.120436 0.99649 33 2 0 16.740585 0.6 0.02 -0.096426 4 6 102 168 60 60 0 0 GG 4.21041 14 0 388 0 KEEP - Pccb YES MNNG_2 chr9 102408458 102408458 G A upstream Ky NA NA upstream Ky NA NA UTR5 ENSMUSG00000035606 NA NA 9qF1 NA NA chr9 102408458 CGGxAGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196285 0.196312 0.999863 43 4 0 29.216085 0.769231 0.02 -0.122728 3 10 86 275 60 60 0 0 GG 6.011043 20 0 533 0 KEEP NA Ky YES MNNG_2 chr9 102632471 102632471 C T exonic Amotl2 nonsynonymous SNV NM_019764:c.C2048T:p.S683F exonic Amotl2 nonsynonymous SNV uc009rfy.1:c.C1121T:p.S374F exonic ENSMUSG00000032531 nonsynonymous SNV ENSMUST00000035121:c.C2048T:p.S683F 9qF1 NA NA chr9 102632471 TATxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 54 0 0 35.158912 0.565217 0.02 -0.210459 10 13 290 358 60 60 0 0 CC 5.706304 19 0 527 0 KEEP + Amotl2 YES MNNG_2 chr9 102972533 102972533 C T intronic Slco2a1 NA NA intronic Slco2a1 NA NA intronic ENSMUSG00000032548 NA NA 9qF1 NA NA chr9 102972533 ACAxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 176 0 0 27.633345 0.254902 0.02 1.132749 38 13 1038 340 60 60 0 0 CC 29.474915 98 0 2697 0 KEEP + Slco2a1 YES MNNG_2 chr9 103252112 103252112 G A exonic Topbp1 nonsynonymous SNV NM_176979:c.G4414A:p.E1472K exonic Topbp1 nonsynonymous SNV uc009rgl.1:c.G4414A:p.E1472K exonic ENSMUSG00000032555 nonsynonymous SNV ENSMUST00000035164:c.G4414A:p.E1472K 9qF1 NA NA chr9 103252112 CAGxAAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 130 4 0 64.966855 0.676471 0.02 -0.29812 11 23 310 633 60 60 0 0 GG 22.561941 75 0 2142 0 KEEP + Topbp1 YES MNNG_2 chr9 105823280 105823280 C T exonic Col6a5 nonsynonymous SNV NM_001167923:c.G4289A:p.G1430E exonic Gm7455 nonsynonymous SNV uc009riv.2:c.G4286A:p.G1429E exonic ENSMUSG00000091345 nonsynonymous SNV ENSMUST00000165165:c.G4286A:p.G1429E 9qF1 NA NA chr9 105823280 GGTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 126 4 0 19.788785 0.243243 0.02 -0.323986 28 9 778 244 60 60 0 0 CC 20.736278 69 0 1919 0 KEEP - Col6a5 YES MNNG_2 chr9 105930570 105930570 C T exonic Col6a4 nonsynonymous SNV NM_026763:c.G4823A:p.R1608K exonic Col6a4 nonsynonymous SNV uc012gzq.1:c.G4823A:p.R1608K exonic ENSMUSG00000032572 nonsynonymous SNV ENSMUST00000035186:c.G4823A:p.R1608K 9qF1 NA NA chr9 105930570 TGCxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 102 4 0 9.77128 0.285714 0.02 -0.271872 10 4 291 115 60 60 0 0 CC 19.54084 65 0 1834 0 KEEP - Col6a4 YES MNNG_2 chr9 106126664 106126664 C T exonic Tlr9 synonymous SNV NM_031178:c.C822T:p.H274H exonic Tlr9 synonymous SNV uc009rjh.1:c.C822T:p.H274H exonic ENSMUSG00000045322 synonymous SNV ENSMUST00000062241:c.C822T:p.H274H 9qF1 NA NA chr9 106126664 CCAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 128 0 0 23.298855 0.203704 0.02 1.221693 43 11 1225 299 60 60 0 0 CC 16.82452 56 0 1521 0 KEEP + Tlr9 YES MNNG_2 chr9 106271608 106271608 C T exonic Dusp7 synonymous SNV NM_153459:c.C480T:p.L160L exonic Dusp7 synonymous SNV uc009rjm.2:c.C480T:p.L160L exonic ENSMUSG00000053716 synonymous SNV ENSMUST00000066312:c.C318T:p.L106L 9qF1 NA NA chr9 106271608 GCTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999988 35 0 0 10.132295 0.5 0.02 -0.069411 4 4 93 106 60 60 0 0 CC 8.121383 27 0 755 0 KEEP + Dusp7 YES MNNG_2 chr9 106404449 106404449 G A exonic Iqcf1 nonsynonymous SNV NM_001146701:c.G325A:p.G109S exonic Iqcf1 nonsynonymous SNV uc009rkd.2:c.G325A:p.G109S exonic ENSMUSG00000066383 nonsynonymous SNV ENSMUST00000164965:c.G325A:p.G109S 9qF1 NA NA chr9 106404449 CGGxGTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 163 2 0 89.368436 0.75 0.02 -0.350522 10 30 266 848 60 60 0 0 GG 28.542189 95 0 2601 0 KEEP + Iqcf1 YES MNNG_2 chr9 106760420 106760420 G A exonic Vprbp nonsynonymous SNV NM_001015507:c.G2235A:p.M745I exonic Vprbp nonsynonymous SNV uc009rkp.2:c.G2235A:p.M745I exonic ENSMUSG00000040325 nonsynonymous SNV ENSMUST00000055009:c.G2235A:p.M745I 9qF1 NA NA chr9 106760420 GATxCCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 714 14 0 365.752936 0.638889 0.02 4.496615 78 138 2245 3614 60 60 0 0 GG 112.776696 375 0 10586 0 KEEP + Vprbp YES MNNG_2 chr9 107446672 107446672 C T intronic Nprl2 NA NA intronic Nprl2 NA NA intronic ENSMUSG00000010057 NA NA 9qF1 NA NA chr9 107446672 TCGxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 132 0 0 30.963071 0.259259 0.02 1.123937 40 14 1120 377 60 60 0 0 CC 18.896068 63 0 1702 0 KEEP + Nprl2 YES MNNG_2 chr9 107485141 107485141 G A intronic "Hyal3,Nat6" NA NA intronic "Hyal3,Nat6" NA NA ncRNA_intronic ENSMUSG00000089935 NA NA 9qF1 NA NA chr9 107485141 CCTxACA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 178 0 0 122.028836 0.6 0.02 1.037563 30 45 865 1225 60 60 0 0 GG 20.455113 68 0 1940 0 KEEP + Hyal3 YES MNNG_2 chr9 107487243 107487243 G A exonic Hyal3 synonymous SNV NM_178020:c.G144A:p.V48V exonic Hyal3 synonymous SNV uc009rmc.2:c.G144A:p.V48V exonic ENSMUSG00000036091 synonymous SNV ENSMUST00000149487:c.G144A:p.V48V 9qF1 NA NA chr9 107487243 TGTxCAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 125 0 0 82.053327 0.584906 0.02 1.132625 22 31 631 829 60 60 0 0 GG 16.159948 61 1 1704 20 KEEP + Hyal3 YES MNNG_2 chr9 107502390 107502390 G A exonic Sema3b nonsynonymous SNV NM_009153:c.C1540T:p.H514Y exonic Sema3b nonsynonymous SNV uc009rmf.1:c.C1540T:p.H514Y exonic ENSMUSG00000057969 nonsynonymous SNV ENSMUST00000102529:c.C1540T:p.H514Y 9qF1 NA NA chr9 107502390 GATxCAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.420782 0.423478 0.993634 31 0 0 35.235484 0.619048 0.02 -0.184143 8 13 231 351 60 60 0 0 GG 3.609435 12 0 334 0 KEEP - Sema3b YES MNNG_2 chr9 107818924 107818924 G A exonic Mst1r nonsynonymous SNV NM_009074:c.G3325A:p.G1109R exonic Mst1r nonsynonymous SNV uc009rni.1:c.G3325A:p.G1109R exonic ENSMUSG00000032584 nonsynonymous SNV ENSMUST00000035203:c.G3325A:p.G1109R 9qF1 NA NA chr9 107818924 GAGxGGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987875 0.987943 0.999931 100 2 0 92.338267 0.576271 0.02 1.267443 25 34 734 936 60 60 0 0 GG 7.437747 25 0 658 0 KEEP + Mst1r YES MNNG_2 chr9 107833258 107833258 C T exonic Actl11 synonymous SNV NM_026338:c.C2448T:p.H816H exonic 4921517D21Rik synonymous SNV uc009rnj.1:c.C2448T:p.H816H exonic ENSMUSG00000066368 synonymous SNV ENSMUST00000085073:c.C2448T:p.H816H 9qF1 NA NA chr9 107833258 ACAxGCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 68 1 0 32.772107 0.5 0.02 -0.236673 13 13 342 344 60 60 0 0 CC 11.423447 38 0 984 0 KEEP + Actl11 YES MNNG_2 chr9 107871043 107871043 C T exonic Traip nonsynonymous SNV NM_011634:c.C1003T:p.H335Y exonic Traip nonsynonymous SNV uc009rnn.1:c.C1003T:p.H335Y exonic ENSMUSG00000032586 nonsynonymous SNV ENSMUST00000049348:c.C1003T:p.H335Y 9qF1 NA NA chr9 107871043 CAGxATT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 71 1 0 21.297903 0.36 0.02 -0.219235 16 9 469 241 60 60 0 0 CC 11.429917 38 0 1065 0 KEEP + Traip YES MNNG_2 chr9 108391881 108391881 G A exonic Lamb2 nonsynonymous SNV NM_008483:c.G4882A:p.G1628R exonic Lamb2 nonsynonymous SNV uc009rpr.2:c.G4882A:p.G1628R exonic ENSMUSG00000052911 nonsynonymous SNV ENSMUST00000065014:c.G4882A:p.G1628R 9qF2 NA NA chr9 108391881 TGGxGAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 78 0 0 65.095378 0.605263 0.02 -0.333253 15 23 438 652 60 60 0 0 GG 10.527546 35 0 977 0 KEEP + Lamb2 YES MNNG_2 chr9 108414856 108414856 C T exonic Qars nonsynonymous SNV NM_001168270:c.C412T:p.P138S exonic Qars nonsynonymous SNV uc009rqa.2:c.C412T:p.P138S exonic ENSMUSG00000032604 nonsynonymous SNV ENSMUST00000123316:c.C412T:p.P138S 9qF2 NA NA chr9 108414856 AACxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 76 2 0 30.5682 0.55 0.02 -0.184169 9 11 262 313 60 60 0 0 CC 12.633529 42 0 1177 0 KEEP + Qars YES MNNG_2 chr9 108484311 108484311 G A exonic P4htm nonsynonymous SNV NM_028944:c.C752T:p.S251F exonic P4htm nonsynonymous SNV uc009rqk.1:c.C752T:p.S251F exonic ENSMUSG00000006675 nonsynonymous SNV ENSMUST00000006853:c.C752T:p.S251F 9qF2 NA NA chr9 108484311 TTGxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 73 0 0 64.466326 0.676471 0.02 -0.298141 11 23 320 628 60 60 0 0 GG 9.626552 32 0 918 0 KEEP - P4htm YES MNNG_2 chr9 108642987 108642987 C T intronic Prkar2a NA NA intronic Prkar2a NA NA intronic ENSMUSG00000032601 NA NA 9qF2 NA NA chr9 108642987 TATxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999998 54 0 0 12.322256 0.357143 0.02 -0.122777 9 5 262 139 60 60 0 0 CC 9.926607 33 0 934 0 KEEP + Prkar2a YES MNNG_2 chr9 108864743 108864743 G A exonic Col7a1 nonsynonymous SNV NM_007738:c.G3652A:p.D1218N exonic Col7a1 nonsynonymous SNV uc009rrh.1:c.G3652A:p.D1218N exonic ENSMUSG00000025650 nonsynonymous SNV ENSMUST00000026740:c.G3652A:p.D1218N 9qF2 NA NA chr9 108864743 GTGxATA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 89 0 0 60.238589 0.594595 0.02 -0.333224 15 22 433 606 60 60 0 0 GG 11.732032 39 0 1112 0 KEEP + Col7a1 YES MNNG_2 chr9 109742199 109742199 C T exonic Nme6 synonymous SNV NM_018757:c.C168T:p.C56C exonic Nme6 synonymous SNV uc009rst.1:c.C168T:p.C56C exonic ENSMUSG00000032478 synonymous SNV ENSMUST00000119376:c.C168T:p.C56C 9qF2 NA NA chr9 109742199 CTGxCGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120175 0.120436 0.997832 30 0 0 7.032683 0.272727 0.02 -0.096456 8 3 225 84 60 60 0 0 CC 4.813088 16 0 454 0 KEEP + Nme6 YES MNNG_2 chr9 109995484 109995484 G A exonic Dhx30 synonymous SNV NM_001252683:c.C633T:p.S211S exonic Dhx30 synonymous SNV uc009rtg.1:c.C633T:p.S211S exonic ENSMUSG00000032480 synonymous SNV ENSMUST00000062368:c.C633T:p.S211S 9qF2 NA NA chr9 109995484 TCGxGAT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 57 0 0 34.581149 0.52 0.02 -0.227985 12 13 342 359 60 60 0 0 GG 6.917893 23 0 640 0 KEEP - Dhx30 YES MNNG_2 chr9 110535210 110535210 G A intronic Nbeal2 NA NA intronic Nbeal2 NA NA intronic ENSMUSG00000056724 NA NA 9qF2 NA NA chr9 110535210 TGTxTGG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 61 0 0 46.655036 0.73913 0.02 -0.201538 6 17 169 443 60 60 0 0 GG 8.721295 29 0 805 0 KEEP - Nbeal2 YES MNNG_2 chr9 110541168 110541168 C T exonic Nbeal2 synonymous SNV NM_183276:c.G1536A:p.Q512Q exonic Nbeal2 synonymous SNV uc012hbk.1:c.G1455A:p.Q485Q exonic ENSMUSG00000056724 synonymous SNV ENSMUST00000149089:c.G1434A:p.Q478Q 9qF2 NA NA chr9 110541168 CTCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899188 0.899314 0.99986 68 2 0 34.268475 0.333333 0.02 -0.368334 28 14 820 392 60 60 0 0 CC 5.713545 19 0 526 0 KEEP - Nbeal2 YES MNNG_2 chr9 113566326 113566326 C T exonic Pdcd6ip nonsynonymous SNV NM_001164677:c.G2137A:p.D713N exonic Pdcd6ip nonsynonymous SNV uc009rwn.2:c.G2122A:p.D708N exonic ENSMUSG00000032504 nonsynonymous SNV ENSMUST00000035086:c.G2122A:p.D708N 9qF3 NA NA chr9 113566326 GATxCCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 151 4 0 33.294993 0.325581 0.02 -0.38585 29 14 837 384 60 60 0 0 CC 24.919099 83 0 2327 0 KEEP - Pdcd6ip YES MNNG_2 chr9 114042399 114042399 G A intergenic "Susd5(dist=34548),Bcl2a1c(dist=196854)" NA NA intergenic "Susd5(dist=34548),AK077029(dist=104416)" NA NA intergenic "ENSMUSG00000086596(dist=34548),ENSMUSG00000064299(dist=143402)" NA NA 9qF3 "Score=0.917672;Name=No.105542,chr9:88800276" NA chr9 114042399 ATGxTGC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 82 0 1 12.644867 0.416667 0.02 -0.114003 7 5 203 138 60 60 0 0 GG 16.207912 54 0 1487 0 KEEP NA Susd5 YES MNNG_2 chr9 119083469 119083469 G A exonic Slc22a14 nonsynonymous SNV NM_001037749:c.C995T:p.A332V exonic Slc22a14 nonsynonymous SNV uc009sak.1:c.C995T:p.A332V exonic ENSMUSG00000070280 nonsynonymous SNV ENSMUST00000170400:c.C995T:p.A332V 9qF3 NA NA chr9 119083469 TTAxCTT G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 208 2 0 112.712467 0.61194 0.02 1.107759 26 41 736 1126 60 60 0 0 GG 33.659955 112 0 3131 0 KEEP - Slc22a14 YES MNNG_2 chr9 119132616 119132616 G A ncRNA_intronic Slc22a13b-ps NA NA intronic 9330176C04Rik NA NA intronic ENSMUSG00000092212 NA NA 9qF3 NA NA chr9 119132616 GATxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818408 0.818465 0.999931 72 0 0 54.283828 0.583333 0.02 -0.315627 15 21 442 549 60 60 0 0 GG 7.520135 25 0 705 0 KEEP - Slc22a13b-ps YES MNNG_2 chr9 119863678 119863678 C T exonic Ttc21a synonymous SNV NM_028735:c.C1707T:p.F569F exonic Ttc21a synonymous SNV uc009sbr.1:c.C108T:p.F36F exonic ENSMUSG00000032514 synonymous SNV ENSMUST00000035100:c.C1707T:p.F569F 9qF4 NA NA chr9 119863678 CTTxATC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 110 3 0 39.7396 0.6 0.02 -0.227966 10 15 289 399 60 60 0 0 CC 18.647212 62 0 1772 0 KEEP + Ttc21a YES MNNG_2 chr9 119928160 119928160 C T exonic Xirp1 synonymous SNV NM_011724:c.G774A:p.R258R exonic Xirp1 synonymous SNV uc009sbw.2:c.G774A:p.R258R exonic ENSMUSG00000079243 synonymous SNV ENSMUST00000111635:c.G774A:p.R258R 9qF4 NA NA chr9 119928160 CTCxCGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 218 2 0 146.100656 0.724638 0.02 1.171045 19 50 534 1399 60 60 0 0 CC 34.590522 115 0 3203 0 KEEP - Xirp1 YES MNNG_2 chr9 120868437 120868437 C T exonic Ctnnb1 synonymous SNV NM_001165902:c.C2148T:p.Y716Y exonic Ctnnb1 synonymous SNV uc009scv.2:c.C453T:p.Y151Y exonic ENSMUSG00000006932 synonymous SNV ENSMUST00000007130:c.C2148T:p.Y716Y 9qF4 NA NA chr9 120868437 CTAxCGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 83 0 0 48.94089 0.475 0.02 -0.350738 21 19 579 519 60 60 0 0 CC 9.924484 33 0 895 0 KEEP + Ctnnb1 YES MNNG_2 chr9 121689167 121689167 G A exonic Klhl40 nonsynonymous SNV NM_028202:c.G1279A:p.D427N exonic Kbtbd5 nonsynonymous SNV uc009sdv.2:c.G1279A:p.D427N exonic ENSMUSG00000074001 nonsynonymous SNV ENSMUST00000098272:c.G1279A:p.D427N 9qF4 NA NA chr9 121689167 GAAxACA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 292 2 0 231.924862 0.643939 0.02 2.233519 47 85 1359 2288 60 60 0 0 GG 39.919282 133 0 3708 0 KEEP + Klhl40 YES MNNG_2 chr9 123037107 123037107 G A intronic Exosc7 NA NA intronic Exosc7 NA NA intronic ENSMUSG00000025785 NA NA 9qF4 NA NA chr9 123037107 AATxTCC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 101 0 0 58.295093 0.605263 0.02 -0.340947 15 23 418 585 60 60 0 0 GG 14.137116 47 0 1315 0 KEEP + Exosc7 YES MNNG_2 chr9 123736218 123736218 C T exonic Fyco1 synonymous SNV NM_001110253:c.G3015A:p.V1005V exonic Fyco1 synonymous SNV uc009sgu.2:c.G3015A:p.V1005V exonic ENSMUSG00000025241 synonymous SNV ENSMUST00000167595:c.G3015A:p.V1005V 9qF4 NA NA chr9 123736218 CTGxACA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 208 0 0 99.297534 0.567164 0.02 1.001172 29 38 833 1011 60 60 0 0 CC 32.18133 107 0 3005 0 KEEP - Fyco1 YES MNNG_2 chr9 123738215 123738215 C T exonic Fyco1 synonymous SNV NM_001110253:c.G2016A:p.E672E exonic Fyco1 synonymous SNV uc009sgu.2:c.G2016A:p.E672E exonic ENSMUSG00000025241 synonymous SNV ENSMUST00000167595:c.G2016A:p.E672E 9qF4 NA NA chr9 123738215 GCAxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 99 1 0 89.221289 0.744186 0.02 -0.376969 11 32 317 846 60 60 0 0 CC 12.933177 43 0 1195 0 KEEP - Fyco1 YES MNNG_2 chr9 15667084 15667084 C T UTR3 Mtnr1b NA NA UTR3 Mtnr1b NA NA UTR3 ENSMUSG00000050901 NA NA 9qA2 NA NA chr9 15667084 TTGxTGC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 92 0 0 32.848552 0.297872 0.02 -0.420926 33 14 936 386 60 60 0 0 CC 9.324318 31 0 863 0 KEEP - Mtnr1b YES MNNG_2 chr9 19613557 19613557 C T exonic Olfr859 nonsynonymous SNV NM_146526:c.C794T:p.S265F exonic Olfr859 nonsynonymous SNV uc009ohv.1:c.C794T:p.S265F exonic ENSMUSG00000066903 nonsynonymous SNV ENSMUST00000086480:c.C794T:p.S265F 9qA3 "Score=0.936229;Name=No.105326,chr9:19509056" NA chr9 19613557 TTTxTAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 169 1 0 53.371631 0.633333 0.02 -0.262098 11 19 300 528 60 60 0 0 CC 36.094818 120 0 3448 0 KEEP + Olfr859 YES MNNG_2 chr9 20606232 20606232 C T exonic Col5a3 synonymous SNV NM_016919:c.G1398A:p.Q466Q exonic Col5a3 synonymous SNV uc009ojf.1:c.G1398A:p.Q466Q exonic ENSMUSG00000004098 synonymous SNV ENSMUST00000004201:c.G1398A:p.Q466Q 9qA3 NA NA chr9 20606232 TGCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 131 1 0 101.580054 0.679245 0.02 1.215092 17 36 493 989 60 70 0 0 CC 15.642399 52 0 1476 0 KEEP - Col5a3 YES MNNG_2 chr9 27130499 27130499 C T exonic Igsf9b nonsynonymous SNV NM_001033323:c.C1322T:p.P441L exonic Igsf9b nonsynonymous SNV uc009oql.1:c.C1322T:p.P441L exonic ENSMUSG00000034275 nonsynonymous SNV ENSMUST00000098919:c.C848T:p.P283L 9qA4 NA NA chr9 27130499 TTCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 121 3 0 118.187148 0.672131 0.02 1.249855 20 41 566 1154 60 60 0 0 CC 13.835716 46 0 1278 0 KEEP + Igsf9b YES MNNG_2 chr9 32348849 32348849 C T UTR5 Fli1 NA NA UTR5 Fli1 NA NA UTR5 ENSMUSG00000016087 NA NA 9qA4 NA NA chr9 32348849 CAGxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 426 2 0 124.350441 0.781818 0.02 1.311397 12 43 339 1164 60 60 0 0 CC 85.0698 283 0 7775 0 KEEP - Fli1 YES MNNG_2 chr9 36600867 36600867 C T exonic Ei24 synonymous SNV NM_001199494:c.G54A:p.E18E exonic Ei24 synonymous SNV uc009oua.2:c.G54A:p.E18E exonic ENSMUSG00000062762 synonymous SNV ENSMUST00000163192:c.G54A:p.E18E 9qA4 NA NA chr9 36600867 CATxTCT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 135 2 0 11.939993 0.333333 0.02 -0.13149 10 5 273 137 60 60 0 0 CC 25.870073 86 0 2449 0 KEEP - Ei24 YES MNNG_2 chr9 37044899 37044899 C T exonic Slc37a2 nonsynonymous SNV NM_001145960:c.G871A:p.A291T exonic Slc37a2 nonsynonymous SNV uc009ouk.2:c.G871A:p.A291T exonic ENSMUSG00000032122 nonsynonymous SNV ENSMUST00000115068:c.G871A:p.A291T 9qA4 NA NA chr9 37044899 GTGxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800159 0.800245 0.999892 71 0 0 19.747725 0.257143 0.02 -0.305901 26 9 721 241 60 60 0 0 CC 6.918012 23 0 638 0 KEEP - Slc37a2 YES MNNG_2 chr9 37155637 37155637 C T exonic Ccdc15 synonymous SNV NM_001081429:c.G15A:p.G5G exonic Ccdc15 synonymous SNV uc009oum.1:c.G15A:p.G5G exonic ENSMUSG00000034303 synonymous SNV ENSMUST00000037275:c.G15A:p.G5G 9qA4 NA NA chr9 37155637 CTGxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999999 58 0 0 28.327886 0.714286 0.02 -0.122763 4 10 118 272 60 60 0 0 CC 10.828558 36 0 1008 0 KEEP - Ccdc15 YES MNNG_2 chr9 39957376 39957376 C T exonic Tmem225 synonymous SNV NM_029379:c.C393T:p.Y131Y exonic Tmem225 synonymous SNV uc009oze.2:c.C393T:p.Y131Y exonic ENSMUSG00000040541 synonymous SNV ENSMUST00000046333:c.C393T:p.Y131Y 9qA5.1 NA NA chr9 39957376 GTAxTTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 73 0 0 14.910594 0.35 0.02 -0.17529 13 7 369 172 60 60 0 0 CC 13.232587 44 0 1212 0 KEEP + Tmem225 YES MNNG_2 chr9 44189499 44189499 T G intronic Hyou1 NA NA intronic Hyou1 NA NA intronic ENSMUSG00000032115 NA NA 9qA5.2 NA NA chr9 44189499 GTGxCCA T G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 146 0 0 47.950781 0.327586 0.02 1.38422 39 19 994 548 60 60 0 0 TT 21.374969 73 1 1970 5 KEEP + Hyou1 NO MNNG_2 chr9 44609818 44609818 A G exonic Ttc36 synonymous SNV NM_138951:c.T157C:p.L53L exonic Ttc36 synonymous SNV uc009peo.1:c.T157C:p.L53L exonic ENSMUSG00000039438 synonymous SNV ENSMUST00000044694:c.T157C:p.L53L 9qA5.2 NA NA chr9 44609818 GCAxCTC A G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582905 0.58293 0.999957 58 0 0 39.952368 0.576923 0.02 -0.227898 11 15 296 405 60 60 0 0 AA 7.817749 26 0 695 0 KEEP - Ttc36 NO MNNG_2 chr9 62992424 62992424 T G exonic Skor1 nonsynonymous SNV NM_001163755:c.A1985C:p.D662A exonic Skor1 nonsynonymous SNV uc009qat.2:c.A2069C:p.D690A exonic ENSMUSG00000022245 nonsynonymous SNV ENSMUST00000055281:c.A2069C:p.D690A 9qC NA NA chr9 62992424 TGGxCGC T G Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800133 0.800245 0.99986 59 0 0 16.73895 0.2 0.02 -0.306711 28 7 720 210 60 60 0 0 TT 5.705198 19 0 485 0 KEEP - Skor1 NO MNNG_2 chr9 70260904 70260904 G A intronic Ccnb2 NA NA intronic Ccnb2 NA NA intronic ENSMUSG00000032218 NA NA 9qD NA NA chr9 70260904 CCAxCTA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457701 0.457757 0.999879 51 0 0 16.38702 0.318182 0.02 -0.191869 15 7 393 190 60 60 0 0 GG 6.617972 22 0 625 0 KEEP - Ccnb2 YES MNNG_2 chr9 75357177 75357177 T C exonic Tmod3 nonsynonymous SNV NM_016963:c.A679G:p.T227A exonic Tmod3 nonsynonymous SNV uc009qsi.1:c.A679G:p.T227A exonic ENSMUSG00000058587 nonsynonymous SNV ENSMUST00000072232:c.A679G:p.T227A 9qD NA NA chr9 75357177 GCGxGTT T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 101 0 0 32.543269 0.518519 0.02 -0.236636 13 14 363 340 60 60 0 0 TT 18.645337 62 0 1673 0 KEEP - Tmod3 NO MNNG_2 chr9 79521199 79521199 G A exonic Col12a1 nonsynonymous SNV NM_007730:c.C4525T:p.P1509S exonic Col12a1 nonsynonymous SNV uc009qut.1:c.C4525T:p.P1509S exonic ENSMUSG00000032332 nonsynonymous SNV ENSMUST00000071750:c.C4525T:p.P1509S 9qE1 NA NA chr9 79521199 TAGxTTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 94 0 0 19.908833 0.470588 0.02 -0.157821 9 8 252 212 60 60 0 0 GG 18.642736 62 0 1672 0 KEEP - Col12a1 YES MNNG_2 chr9 89497518 89497518 C T exonic AF529169 synonymous SNV NM_153509:c.G663A:p.E221E exonic AF529169 synonymous SNV uc009qzn.1:c.G663A:p.E221E exonic ENSMUSG00000039313 synonymous SNV ENSMUST00000113096:c.G663A:p.E221E 9qE3.1 NA NA chr9 89497518 GTTxTCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522093 0.522161 0.999869 51 0 0 49.741475 0.708333 0.02 -0.210219 7 17 185 479 60 60 0 0 CC 6.317283 21 0 600 0 KEEP - AF529169 YES MNNG_2 chr9 91281397 91281397 C T UTR3 Zic4 NA NA UTR3 Zic4 NA NA UTR3 ENSMUSG00000036972 NA NA 9qE3.3 NA NA chr9 91281397 TGCxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 61 0 0 10.722673 0.444444 0.02 -0.078933 5 4 148 115 60 60 0 0 CC 12.281136 41 0 1089 0 KEEP + Zic4 YES MNNG_2 chr9 92501935 92501935 G A exonic Plod2 nonsynonymous SNV NM_011961:c.G2081A:p.R694K exonic Plod2 nonsynonymous SNV uc009rau.2:c.G2081A:p.R694K exonic ENSMUSG00000032374 nonsynonymous SNV ENSMUST00000070522:c.G2081A:p.R694K 9qE3.3 NA NA chr9 92501935 TGAxGTA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 46 0 0 24.609349 0.75 0.02 -0.104808 3 9 84 233 60 60 0 0 GG 8.422819 28 0 795 0 KEEP + Plod2 YES MNNG_2 chr9 98408200 98408200 C T intronic Rbp2 NA NA intronic Rbp2 NA NA intronic ENSMUSG00000032454 NA NA 9qE3.3 NA NA chr9 98408200 TGTxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.917953 0.918171 0.999763 91 0 0 26.560573 0.27907 0.02 -0.385299 31 12 888 319 60 60 0 0 CC 10.22596 34 0 957 0 KEEP + Rbp2 YES MNNG_2 chr9 98854076 98854076 G A ncRNA_exonic Foxl2os NA NA ncRNA_exonic Foxl2os NA NA ncRNA_exonic ENSMUSG00000074122 NA NA 9qE3.3 NA NA chr9 98854076 GTAxTCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139814 0.139832 0.999869 39 0 0 22.513077 0.727273 0.02 -0.105214 3 8 84 215 60 60 0 0 GG 6.013824 20 0 539 0 KEEP - Foxl2os YES MNNG_2 chrM 14603 14603 C T intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic Cytb NA NA exonic ENSMUSG00000064370 unknown UNKNOWN NA NA NA chrM 14603 CATxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1999 40 0 104.086807 0.068596 0.02 21.037333 869 64 24638 1746 60 60 0 0 CC 296.607269 987 0 27200 0 KEEP + NONE YES MNNG_2 chrM 14979 14979 G A intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic Cytb NA NA exonic ENSMUSG00000064370 unknown UNKNOWN NA NA NA chrM 14979 TACxCCA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1997 31 0 31.743223 0.029095 0.02 20.413612 901 27 22961 713 60 60 0 0 GG 296.97641 989 0 24620 0 KEEP + NONE YES MNNG_2 chrX 100903098 100903098 T C exonic Slc16a2 nonsynonymous SNV NM_009197:c.A1040G:p.H347R exonic Slc16a2 nonsynonymous SNV uc009tzy.1:c.A1040G:p.H347R exonic ENSMUSG00000033965 nonsynonymous SNV ENSMUST00000042664:c.A1040G:p.H347R XqD NA NA chrX 100903098 AGGxGCA T C Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668494 0.668523 0.999957 60 0 0 9.202234 0.172414 0.02 -0.254244 24 5 649 126 60 60 0 0 TT 7.818649 26 0 696 0 KEEP - Slc16a2 NO MNNG_2 chrX 103352830 103352830 C T exonic Tlr13 nonsynonymous SNV NM_205820:c.C833T:p.S278F exonic Tlr13 nonsynonymous SNV uc009ubn.1:c.C833T:p.S278F exonic ENSMUSG00000033777 nonsynonymous SNV ENSMUST00000040065:c.C833T:p.S278F XqD NA NA chrX 103352830 CTTxCCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 55 0 0 6.572801 0.2 0.02 -0.131548 12 3 347 84 60 60 0 0 CC 10.821726 36 0 1005 0 KEEP + Tlr13 YES MNNG_2 chrX 103468026 103468026 C T intergenic "Fnd3c2(dist=17315),Fndc3c1(dist=147356)" NA NA intergenic "Fnd3c2(dist=17315),Fndc3c1(dist=147356)" NA NA ncRNA_exonic ENSMUSG00000082618 NA NA XqD "Score=0.951913;Name=No.113776,chrX:103435024" NA chrX 103468026 ATTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 171 0 45 8.76963 0.190476 0.02 -0.192938 17 4 492 113 60 43 0 0 CC 35.196563 117 0 3341 0 KEEP NA Fnd3c2 YES MNNG_2 chrX 10892644 10892644 G T UTR3 Gm14482 NA NA intergenic "Gm14484(dist=3091),Gm4906(dist=12304)" NA NA UTR3 ENSMUSG00000090976 NA NA XqA1.1 "Score=0.990491;Name=No.107628,chrX:10898938" NA chrX 10892644 TTCxGCC G T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 273 0 49 103.578784 0.627119 0.02 1.268215 22 37 559 1028 30 30 0 0 GG 45.952975 153 0 3856 0 KEEP NA Gm14482 NO MNNG_2 chrX 117275446 117275446 C T intergenic "Pabpc5(dist=231672),Pcdh11x(dist=128490)" NA NA intergenic "Pabpc5(dist=231672),Pcdh11x(dist=128490)" NA NA downstream ENSMUSG00000082927 NA NA XqE2 "Score=0.967383;Name=No.105071,chr8:95239645" NA chrX 117275446 ATCxCAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 112 3 3 23.944065 0.357143 0.02 -0.254298 18 10 515 271 60 60 0 0 CC 20.699894 69 0 1898 0 KEEP NA Pabpc5 YES MNNG_2 chrX 131490478 131490478 C T intronic Nxf2 NA NA intronic Nxf2 NA NA intronic ENSMUSG00000009941 NA NA XqE3 NA NA chrX 131490478 TGAxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 178 2 0 9.870892 0.185185 0.02 -0.25427 22 5 611 131 60 60 0 0 CC 35.424611 118 0 3194 0 KEEP - Nxf2 YES MNNG_2 chrX 132674836 132674836 T A UTR3 Bex4 NA NA UTR3 Bex4 NA NA UTR3 ENSMUSG00000047844 NA NA XqF1 NA NA chrX 132674836 AACxTTT T A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 319 25 55 19.396142 0.36 0.02 -0.219074 16 9 437 222 60 60 0 0 TT 62.858795 209 0 5808 0 KEEP + Bex4 NO MNNG_2 chrX 132735952 132735952 C T exonic Tceal5 synonymous SNV NM_177919:c.G375A:p.Q125Q exonic Tceal5 synonymous SNV uc009uif.1:c.G375A:p.Q125Q exonic ENSMUSG00000054034 synonymous SNV ENSMUST00000066819:c.G375A:p.Q125Q XqF1 NA NA chrX 132735952 CTCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 234 4 58 31.904983 0.295455 0.02 -0.385881 31 13 902 373 60 60 0 0 CC 40.902511 136 0 3862 0 KEEP - Tceal5 YES MNNG_2 chrX 135506391 135506391 C T exonic Nrk synonymous SNV NM_013724:c.C831T:p.V277V exonic Nrk synonymous SNV uc009ujx.2:c.C831T:p.V277V exonic ENSMUSG00000052854 synonymous SNV ENSMUST00000064937:c.C831T:p.V277V XqF1 NA NA chrX 135506391 AGTxAAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 120 0 0 18.042232 0.285714 0.02 -0.245541 20 8 576 215 60 60 0 0 CC 21.628365 75 1 2155 8 KEEP + Nrk YES MNNG_2 chrX 136389523 136389523 C T exonic Morc4 nonsynonymous SNV NM_001193309:c.G682A:p.D228N exonic Morc4 nonsynonymous SNV uc009ukn.2:c.G682A:p.D228N exonic ENSMUSG00000031434 nonsynonymous SNV ENSMUST00000033811:c.G682A:p.D228N XqF1 NA NA chrX 136389523 CATxTTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 69 0 0 6.373057 0.2 0.02 -0.131535 12 3 350 82 60 60 0 0 CC 13.236619 44 0 1267 0 KEEP - Morc4 YES MNNG_2 chrX 136965221 136965221 C T intergenic "Frmpd3(dist=36162),Prps1(dist=25921)" NA NA intergenic "Frmpd3(dist=36142),Prps1(dist=25921)" NA NA intergenic "ENSMUSG00000042425(dist=36142),ENSMUSG00000082031(dist=14872)" NA NA XqF1 NA NA chrX 136965221 TTCxTGG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 96 1 0 23.804162 0.25 0.02 -0.350813 30 10 882 288 60 60 0 0 CC 12.632476 42 0 1174 0 KEEP NA Frmpd3 YES MNNG_2 chrX 139536658 139536658 C T exonic Rgag1 nonsynonymous SNV NM_001040434:c.C2513T:p.P838L exonic Rgag1 nonsynonymous SNV uc009umd.2:c.C2513T:p.P838L exonic ENSMUSG00000085584 nonsynonymous SNV ENSMUST00000124473:c.C2051T:p.P684L XqF2 NA NA chrX 139536658 GACxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 76 0 0 16.663839 0.269231 0.02 -0.227997 19 7 540 199 60 60 0 0 CC 12.932945 43 0 1195 0 KEEP + Rgag1 YES MNNG_2 chrX 144200589 144200589 C T intergenic "Lrch2(dist=211965),Gm15080(dist=226947)" NA NA intergenic "Lrch2(dist=211965),NONE(dist=NONE)" NA NA UTR5 ENSMUSG00000072932 NA NA XqF2 "Score=0.97251;Name=No.114384,chrX:144584728" NA chrX 144200589 ACTxCCA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 373 1 1 36.945319 0.209877 0.02 0.985014 64 17 1851 469 60 60 0 0 CC 66.723674 222 0 6238 0 KEEP NA Lrch2 YES MNNG_2 chrX 148350628 148350628 C T exonic Huwe1 nonsynonymous SNV NM_021523:c.C8798T:p.A2933V exonic Huwe1 nonsynonymous SNV uc009upr.1:c.C3806T:p.A1269V exonic ENSMUSG00000025261 nonsynonymous SNV ENSMUST00000112622:c.C8795T:p.A2932V XqF3 NA NA chrX 148350628 CTGxCGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 61 0 0 20.712661 0.533333 0.02 -0.131506 7 8 196 214 60 60 0 0 CC 11.729907 39 0 1075 0 KEEP + Huwe1 YES MNNG_2 chrX 156562450 156562450 C T splicing Pdha1(NM_008810:exon11:c.1008+1G>A) NA NA splicing Pdha1(uc009utc.1:exon11:c.1008+1G>A) NA NA splicing ENSMUSG00000031299(ENSMUST00000033662:exon11:c.1008+1G>A) NA NA XqF4 NA NA chrX 156562450 GTAxCTT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 149 0 0 18.244129 0.285714 0.02 -0.262665 20 8 535 217 60 60 0 0 CC 28.537597 95 0 2583 0 KEEP - Pdha1 YES MNNG_2 chrX 158215708 158215708 C T exonic Rai2 nonsynonymous SNV NM_001103367:c.C224T:p.A75V exonic Rai2 nonsynonymous SNV uc009uua.2:c.C224T:p.A75V exonic ENSMUSG00000043518 nonsynonymous SNV ENSMUST00000061514:c.C224T:p.A75V XqF4 NA NA chrX 158215708 CAGxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 136 2 0 44.540687 0.311475 0.02 1.143122 42 19 1165 519 60 60 0 0 CC 18.031917 60 0 1635 0 KEEP + Rai2 YES MNNG_2 chrX 158216149 158216149 C T exonic Rai2 nonsynonymous SNV NM_001103367:c.C665T:p.S222F exonic Rai2 nonsynonymous SNV uc009uua.2:c.C665T:p.S222F exonic ENSMUSG00000043518 nonsynonymous SNV ENSMUST00000061514:c.C665T:p.S222F XqF4 NA NA chrX 158216149 TGTxCCC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 329 7 0 273.468173 0.621951 0.02 3.721646 62 102 1712 2722 60 60 0 0 CC 34.870065 116 0 3187 0 KEEP + Rai2 YES MNNG_2 chrX 158945545 158945545 C T exonic Reps2 nonsynonymous SNV NM_178256:c.G1337A:p.R446K exonic Reps2 nonsynonymous SNV uc009uue.1:c.G1337A:p.R446K exonic ENSMUSG00000040855 nonsynonymous SNV ENSMUST00000101102:c.G1337A:p.R446K XqF4 NA NA chrX 158945545 GATxTTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 77 0 0 25.406206 0.692308 0.02 -0.11398 4 9 109 246 60 60 0 0 CC 15.037306 50 0 1426 0 KEEP - Reps2 YES MNNG_2 chrX 160977649 160977649 C T UTR3 Asb9 NA NA UTR3 Asb9 NA NA UTR3 ENSMUSG00000031384 NA NA XqF5 NA NA chrX 160977649 TTAxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 56 0 0 8.56387 0.2 0.02 -0.175395 16 4 465 110 60 60 0 0 CC 8.121437 27 0 755 0 KEEP + Asb9 YES MNNG_2 chrX 166423920 166423920 C T exonic Mid1 synonymous SNV NM_010797:c.C1377T:p.N459N exonic Mid1 synonymous SNV uc009uxz.1:c.C720T:p.N240N exonic ENSMUSG00000035299 synonymous SNV ENSMUST00000079443:c.C537T:p.N179N XqF5 NA NA chrX 166423920 GAAxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 130 0 0 8.182713 0.111111 0.02 -0.3944 40 5 1097 126 60 60 0 0 CC 19.850539 66 0 1823 0 KEEP - Mid1 YES MNNG_2 chrX 17823114 17823114 G A exonic Kdm6a nonsynonymous SNV NM_009483:c.G904A:p.V302I exonic Kdm6a nonsynonymous SNV uc009ssl.1:c.G145A:p.V49I exonic ENSMUSG00000037369 nonsynonymous SNV ENSMUST00000044484:c.G904A:p.V302I XqA1.3 NA NA chrX 17823114 AAAxTTC G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 87 1 0 32.038137 0.545455 0.02 -0.192915 10 12 285 329 60 60 0 0 GG 15.63965 52 0 1448 0 KEEP + Kdm6a YES MNNG_2 chrX 39581512 39581512 G A splicing "Stag2(NM_001077712:exon10:c.1017+1G>A,NM_021465:exon10:c.1017+1G>A)" NA NA splicing "Stag2(uc009tax.1:exon10:c.1017+1G>A,uc009taz.1:exon10:c.1017+1G>A)" NA NA splicing "ENSMUSG00000025862(ENSMUST00000115073:exon10:c.1017+1G>A,ENSMUST00000115072:exon10:c.1017+1G>A,ENSMUST00000069619:exon10:c.1017+1G>A)" NA NA XqA4 NA NA chrX 39581512 AAGxTAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999999 56 2 0 11.321819 0.357143 0.02 -0.122744 9 5 247 129 60 60 0 0 GG 10.827684 36 0 991 0 KEEP + Stag2 YES MNNG_2 chrX 40290956 40290956 G A exonic Tenm1 synonymous SNV NM_011855:c.C711T:p.S237S exonic "Odz1,ten-m1" synonymous SNV uc009tbc.1:c.C711T:p.S237S exonic ENSMUSG00000016150 synonymous SNV ENSMUST00000115058:c.C711T:p.S237S XqA4 NA NA chrX 40290956 TGTxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 118 0 0 109.778491 0.640625 0.02 1.036221 23 41 677 1084 60 60 0 0 GG 12.632633 42 0 1176 0 KEEP - Tenm1 YES MNNG_2 chrX 57432096 57432096 C T intergenic "Mcf2(dist=31276),Atp11c(dist=44371)" NA NA UTR5 Mcf2 NA NA UTR5 ENSMUSG00000031139 NA NA XqA6 NA NA chrX 57432096 AGAxTCG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.850137 0.851984 0.997832 65 2 0 21.333564 0.277778 0.02 -0.333124 26 10 738 258 60 60 0 0 CC 4.813014 16 0 455 0 KEEP - Mcf2 YES MNNG_2 chrX 58963460 58963460 C T UTR3 Ldoc1 NA NA UTR3 Ldoc1 NA NA UTR3 ENSMUSG00000057615 NA NA XqA6 NA NA chrX 58963460 AGTxTGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 204 0 0 129.687226 0.762712 0.02 1.090331 14 45 405 1223 60 60 0 0 CC 33.981104 113 0 3217 0 KEEP + Ldoc1 YES MNNG_2 chrX 70679497 70679497 C T exonic Trex2 nonsynonymous SNV NM_011907:c.G482A:p.G161D exonic Trex2 nonsynonymous SNV uc009tlt.2:c.G482A:p.G161D exonic ENSMUSG00000031372 nonsynonymous SNV ENSMUST00000033738:c.G482A:p.G161D XqA7.3 NA NA chrX 70679497 GTGxCGT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 147 0 0 81.731356 0.402439 0.02 0.967499 49 33 1396 900 60 60 0 0 CC 14.734855 49 0 1334 0 KEEP - Trex2 YES MNNG_2 chrX 70700221 70700221 C T exonic Haus7 nonsynonymous SNV NM_028633:c.G274A:p.D92N exonic Haus7 nonsynonymous SNV uc009tlu.1:c.G274A:p.D92N exonic ENSMUSG00000031371 nonsynonymous SNV ENSMUST00000033737:c.G274A:p.D92N XqA7.3 NA NA chrX 70700221 AATxCAA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 132 4 0 10.760158 0.192308 0.02 -0.228015 21 5 607 139 60 60 0 0 CC 23.762451 79 0 2232 0 KEEP - Haus7 YES MNNG_2 chrX 71138869 71138869 G A intronic Avpr2 NA NA UTR3 Avpr2 NA NA UTR3 ENSMUSG00000031389 NA NA XqA7.3 NA NA chrX 71138869 AAGxCTG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 132 2 0 43.06122 0.287879 0.02 1.018602 47 19 1344 512 60 60 0 0 GG 15.895841 53 0 1451 0 KEEP + Avpr2 YES MNNG_2 chrX 71197407 71197407 C T exonic Hcfc1 nonsynonymous SNV NM_008224:c.G2354A:p.G785D exonic Hcfc1 nonsynonymous SNV uc009tnm.1:c.G2354A:p.G785D exonic ENSMUSG00000031386 nonsynonymous SNV ENSMUST00000033761:c.G2354A:p.G785D XqA7.3 NA NA chrX 71197407 ACAxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717238 0.717315 0.999892 54 0 0 29.237396 0.387097 0.02 -0.271833 19 12 538 325 60 60 0 0 CC 6.917984 23 0 638 0 KEEP - Hcfc1 YES MNNG_2 chrX 71469291 71469291 C T exonic Flna synonymous SNV NM_010227:c.G7758A:p.V2586V exonic Flna synonymous SNV uc009tny.1:c.G7758A:p.V2586V exonic ENSMUSG00000031328 synonymous SNV ENSMUST00000130007:c.G7590A:p.V2530V XqA7.3 NA NA chrX 71469291 ATGxACG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 0.999999 76 2 0 25.830278 0.387097 0.02 -0.271737 19 12 544 291 60 60 0 0 CC 10.789051 36 0 983 0 KEEP - Flna YES MNNG_2 chrX 71547856 71547856 C T exonic Atp6ap1 synonymous SNV NM_018794:c.C822T:p.D274D exonic Atp6ap1 synonymous SNV uc009tol.2:c.C822T:p.D274D exonic ENSMUSG00000019087 synonymous SNV ENSMUST00000147275:c.C612T:p.D204D XqA7.3 NA NA chrX 71547856 AGAxGAG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 0.999999 71 0 0 24.047047 0.357143 0.02 -0.245436 18 10 458 272 60 60 0 0 CC 10.786566 36 0 908 0 KEEP + Atp6ap1 YES MNNG_2 chrX 7387132 7387132 G A intronic Gripap1 NA NA intronic Gripap1 NA NA intronic ENSMUSG00000031153 NA NA XqA1.1 NA NA chrX 7387132 GAGxAAG G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.48826 0.490544 0.995343 44 0 0 10.957513 0.217391 0.02 -0.201692 18 5 515 138 60 60 0 0 GG 4.210555 14 0 392 0 KEEP + Gripap1 YES MNNG_2 chrX 83644321 83644321 C T intergenic "Gm41(dist=43988),Il1rapl1(dist=348260)" NA NA intergenic "Gm41(dist=43988),Il1rapl1(dist=348260)" NA NA ncRNA_exonic ENSMUSG00000082450 NA NA XqC1 NA NA chrX 83644321 TTTxGTC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 136 2 0 14.938767 0.2 0.02 -0.323326 28 7 724 192 60 60 0 0 CC 23.734897 79 0 1979 0 KEEP NA Gm41 YES MNNG_2 chrX 97735351 97735351 C T exonic Dgat2l6 nonsynonymous SNV NM_001114084:c.C95T:p.S32F exonic Dgat2l6 nonsynonymous SNV uc012hmt.1:c.C95T:p.S32F exonic ENSMUSG00000067597 nonsynonymous SNV ENSMUST00000037541:c.C95T:p.S32F XqC3 NA NA chrX 97735351 TTTxCAT C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 220 0 0 115.149339 0.650794 0.02 1.142842 22 41 619 1133 60 60 0 0 CC 39.868579 136 1 3852 9 KEEP + Dgat2l6 YES MNNG_2 chrX 97818703 97818703 C T UTR3 Pdzd11 NA NA UTR3 Pdzd11 NA NA UTR3 ENSMUSG00000015668 NA NA XqC3 NA NA chrX 97818703 ATCxCAC C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 152 1 0 60.118677 0.636364 0.02 -0.289391 12 21 342 595 60 60 0 0 CC 26.0975 87 0 2392 0 KEEP - Pdzd11 YES MNNG_2 chrX 97921834 97921834 C T exonic Kif4 synonymous SNV NM_008446:c.C3532T:p.L1178L exonic Kif4 synonymous SNV uc012hmu.1:c.C1891T:p.L631L exonic ENSMUSG00000034311 synonymous SNV ENSMUST00000048962:c.C3532T:p.L1178L XqC3 NA NA chrX 97921834 CAGxTGA C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 73 0 0 24.204828 0.6 0.02 -0.13152 6 9 170 243 60 60 0 0 CC 13.234346 44 0 1223 0 KEEP + Kif4 YES MNNG_2 chrX 98276194 98276194 C T exonic Slc7a3 nonsynonymous SNV NM_007515:c.G1303A:p.E435K exonic Slc7a3 nonsynonymous SNV uc009twu.1:c.G1303A:p.E435K exonic ENSMUSG00000031297 nonsynonymous SNV ENSMUST00000073927:c.G1303A:p.E435K XqC3 NA NA chrX 98276194 TTTxCTG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 74 0 0 22.252278 0.615385 0.02 -0.114 5 8 143 222 60 60 0 0 CC 14.994892 50 0 1397 0 KEEP - Slc7a3 YES MNNG_2 chrX 98454511 98454511 C T exonic Foxo4 synonymous SNV NM_018789:c.C1449T:p.D483D exonic Foxo4 synonymous SNV uc009twz.2:c.C1449T:p.D483D exonic ENSMUSG00000042903 synonymous SNV ENSMUST00000062000:c.C1449T:p.D483D XqD NA NA chrX 98454511 CGAxATG C T Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 62 0 0 15.148053 0.291667 0.02 -0.21044 17 7 484 181 60 60 0 0 CC 8.723381 29 0 820 0 KEEP + Foxo4 YES MNNG_2 chrX 98868560 98868560 G A intronic Ogt NA NA intronic Ogt NA NA intronic ENSMUSG00000034160 NA NA XqD NA NA chrX 98868560 GCAxAAA G A Ot5150_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index33_CAGGCG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12042 0.120436 0.999863 32 0 0 7.032385 0.272727 0.02 -0.096472 8 3 236 84 60 60 0 0 GG 6.016705 20 0 575 0 KEEP + Ogt YES MNNG_3 chr10 106848954 106848954 C T intronic Lin7a NA NA intronic Lin7a NA NA intronic ENSMUSG00000019906 NA NA 10qD1 NA NA chr10 106848954 AATxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 148 0 0 81.037466 0.470588 0.02 1.00111 36 32 1012 862 60 60 0 0 CC 17.447675 58 0 1652 0 KEEP + Lin7a YES MNNG_3 chr10 115775724 115775724 C T exonic Ptprb synonymous SNV NM_029928:c.C2244T:p.Y748Y exonic Ptprb synonymous SNV uc007hbv.2:c.C2244T:p.Y748Y exonic ENSMUSG00000020154 synonymous SNV ENSMUST00000092167:c.C2244T:p.Y748Y 10qD2 NA NA chr10 115775724 CTAxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 110 0 0 46.621267 0.487179 0.02 -0.341931 20 19 555 493 60 60 0 0 CC 17.746026 59 0 1639 0 KEEP + Ptprb YES MNNG_3 chr10 118298985 118298985 C T intronic Dyrk2 NA NA intronic Dyrk2 NA NA UTR3 ENSMUSG00000050709 NA NA 10qD2 NA NA chr10 118298985 TTGxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 67 0 0 44.15894 0.586207 0.02 -0.254254 12 17 334 446 60 60 0 0 CC 8.723367 29 0 817 0 KEEP - Dyrk2 YES MNNG_3 chr10 120712880 120712880 C T exonic Tbc1d30 nonsynonymous SNV NM_029057:c.G1198A:p.D400N exonic Tbc1d30 nonsynonymous SNV uc007hfl.2:c.G220A:p.D74N exonic ENSMUSG00000052302 nonsynonymous SNV ENSMUST00000064107:c.G1198A:p.D400N 10qD2 NA NA chr10 120712880 CATxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 120 0 0 53.341796 0.431373 0.02 1.150223 29 22 814 580 60 60 0 0 CC 14.137662 47 0 1326 0 KEEP - Tbc1d30 YES MNNG_3 chr10 120802436 120802436 C T intronic Gns NA NA exonic AK081796 nonsynonymous SNV uc007hfq.1:c.C190T:p.P64S intronic ENSMUSG00000034707 NA NA 10qD2 NA NA chr10 120802436 CTCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053885 0.054137 0.995343 23 2 0 9.897929 0.5 0.02 -0.070141 4 4 113 104 60 60 0 0 CC 4.210997 14 0 389 0 KEEP + Gns YES MNNG_3 chr10 121889176 121889176 G A exonic Avpr1a synonymous SNV NM_016847:c.G1032A:p.L344L exonic Avpr1a synonymous SNV uc007hge.1:c.G1032A:p.L344L exonic ENSMUSG00000020123 synonymous SNV ENSMUST00000020323:c.G1032A:p.L344L 10qD2 NA NA chr10 121889176 CTTxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 86 0 0 44.263291 0.473684 0.02 -0.333187 20 18 568 471 60 60 0 0 GG 10.229019 34 0 993 0 KEEP + Avpr1a YES MNNG_3 chr10 12195110 12195110 C T exonic Utrn stopgain SNV NM_011682:c.G8448A:p.W2816X exonic Utrn stopgain SNV uc007ejx.1:c.G1119A:p.W373X exonic ENSMUSG00000019820 stopgain SNV ENSMUST00000064997:c.G1119A:p.W373X 10qA1 NA NA chr10 12195110 CTGxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78105 0.78106 0.999988 80 3 0 40.000408 0.484848 0.02 -0.28934 17 16 471 423 60 60 0 0 CC 8.121794 27 0 761 0 KEEP - Utrn YES MNNG_3 chr10 12400266 12400266 C T intronic Utrn NA NA intronic Utrn NA NA intronic ENSMUSG00000019820 NA NA 10qA1 NA NA chr10 12400266 CCCxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 56 0 0 14.865071 0.375 0.02 -0.140306 10 6 281 166 60 60 0 0 CC 8.720224 29 0 784 0 KEEP - Utrn YES MNNG_3 chr10 125450381 125450381 C T exonic Lrig3 synonymous SNV NM_177152:c.C2913T:p.S971S exonic Lrig3 synonymous SNV uc007hhd.2:c.C2913T:p.S971S exonic ENSMUSG00000020105 synonymous SNV ENSMUST00000074807:c.C2913T:p.S971S 10qD3 NA NA chr10 125450381 CTCxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 159 0 0 79.259284 0.517241 0.02 1.169089 28 30 789 824 60 60 0 0 CC 23.464456 78 0 2237 0 KEEP + Lrig3 YES MNNG_3 chr10 126470338 126470338 C T exonic LOC100504608 nonsynonymous SNV NM_001205036:c.G322A:p.A108T intergenic "Tsfm(dist=2468),Mettl1(dist=8650)" NA NA exonic ENSMUSG00000080115 nonsynonymous SNV ENSMUST00000116231:c.G322A:p.A108T 10qD3 NA NA chr10 126470338 GTGxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353179 0.353947 0.997832 39 0 0 21.980869 0.473684 0.02 -0.166572 10 9 276 234 60 60 0 0 CC 4.811939 16 0 438 0 KEEP - LOC100504608 YES MNNG_3 chr10 127183778 127183778 C T UTR3 Zbtb39 NA NA UTR3 Zbtb39 NA NA UTR3 ENSMUSG00000044617 NA NA 10qD3 NA NA chr10 127183778 GCCxCGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490511 0.490544 0.999931 52 0 0 19.063097 0.347826 0.02 -0.201666 15 8 412 217 60 60 0 0 CC 7.52003 25 0 702 0 KEEP + Zbtb39 YES MNNG_3 chr10 127872553 127872553 C T exonic Rnf41 nonsynonymous SNV NM_001164237:c.C275T:p.A92V exonic Rnf41 nonsynonymous SNV uc007hmv.1:c.C275T:p.A92V exonic ENSMUSG00000025373 nonsynonymous SNV ENSMUST00000096386:c.C275T:p.A92V 10qD3 NA NA chr10 127872553 GTGxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 271 1 0 142.107207 0.471545 0.02 2.116255 65 58 1815 1514 60 60 0 0 CC 38.195875 127 0 3510 0 KEEP + Rnf41 YES MNNG_3 chr10 127954797 127954797 C T exonic Esyt1 synonymous SNV NM_011843:c.G1626A:p.L542L exonic Esyt1 synonymous SNV uc007hng.1:c.G1626A:p.L542L exonic ENSMUSG00000025366 synonymous SNV ENSMUST00000026427:c.G1626A:p.L542L 10qD3 NA NA chr10 127954797 AGTxAGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 43 0 0 18.061879 0.347826 0.02 -0.201662 15 8 418 207 60 60 0 0 CC 5.11316 17 0 476 0 KEEP - Esyt1 YES MNNG_3 chr10 128244512 128244512 C T exonic Dnajc14 nonsynonymous SNV NM_028873:c.C1246T:p.P416S exonic Dnajc14 nonsynonymous SNV uc007hok.1:c.C1246T:p.P416S exonic ENSMUSG00000025354 nonsynonymous SNV ENSMUST00000026410:c.C1246T:p.P416S 10qD3 NA NA chr10 128244512 GCAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 138 0 0 68.543933 0.466667 0.02 1.062536 32 28 876 732 60 60 0 0 CC 16.843049 56 0 1544 0 KEEP + Dnajc14 YES MNNG_3 chr10 12887634 12887634 G A exonic Zc2hc1b nonsynonymous SNV NM_029172:c.C322T:p.P108S exonic Fam164b nonsynonymous SNV uc007eko.2:c.C322T:p.P108S exonic ENSMUSG00000019815 nonsynonymous SNV ENSMUST00000170508:c.C298T:p.P100S 10qA2 NA NA chr10 12887634 GAGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934489 0.934492 0.999997 83 2 0 58.507364 0.521739 0.02 -0.403257 22 24 599 609 60 60 0 0 GG 9.023178 30 0 828 0 KEEP - Zc2hc1b YES MNNG_3 chr10 14156716 14156716 C T exonic Gpr126 nonsynonymous SNV NM_001002268:c.G2048A:p.G683E exonic Gpr126 nonsynonymous SNV uc007elk.1:c.G2048A:p.G683E exonic ENSMUSG00000039116 nonsynonymous SNV ENSMUST00000041168:c.G2048A:p.G683E 10qA2 NA NA chr10 14156716 TTCxCGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999999 88 0 0 45.866276 0.473684 0.02 -0.333206 20 18 559 487 60 60 0 0 CC 10.527149 35 0 976 0 KEEP - Gpr126 YES MNNG_3 chr10 14167907 14167907 C T exonic Gpr126 synonymous SNV NM_001002268:c.G1305A:p.R435R exonic Gpr126 synonymous SNV uc007elk.1:c.G1305A:p.R435R exonic ENSMUSG00000039116 synonymous SNV ENSMUST00000041168:c.G1305A:p.R435R 10qA2 NA NA chr10 14167907 CATxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 275 1 0 143.211644 0.482759 0.02 2.177559 60 56 1677 1514 60 60 0 0 CC 35.192551 117 0 3301 0 KEEP - Gpr126 YES MNNG_3 chr10 17842282 17842282 C T exonic Reps1 synonymous SNV NM_001111065:c.C1929T:p.A643A exonic Reps1 synonymous SNV uc007emb.2:c.C1929T:p.A643A exonic ENSMUSG00000019854 synonymous SNV ENSMUST00000154718:c.C1740T:p.A580A 10qA3 NA NA chr10 17842282 TGCxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 186 0 0 59.918763 0.436364 0.02 1.213979 31 24 832 648 60 60 0 0 CC 27.314098 91 0 2466 0 KEEP + Reps1 YES MNNG_3 chr10 19568823 19568823 C T exonic Slc35d3 synonymous SNV NM_029529:c.G1092A:p.R364R exonic Slc35d3 synonymous SNV uc007enk.1:c.G1092A:p.R364R exonic ENSMUSG00000050473 synonymous SNV ENSMUST00000059805:c.G1092A:p.R364R 10qA3 NA NA chr10 19568823 GCCxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 268 2 0 133.061967 0.430894 0.02 2.196534 70 53 1935 1443 60 60 0 0 CC 33.386993 111 0 3091 0 KEEP - Slc35d3 YES MNNG_3 chr10 19568835 19568835 C T exonic Slc35d3 synonymous SNV NM_029529:c.G1080A:p.G360G exonic Slc35d3 synonymous SNV uc007enk.1:c.G1080A:p.G360G exonic ENSMUSG00000050473 synonymous SNV ENSMUST00000059805:c.G1080A:p.G360G 10qA3 NA NA chr10 19568835 TTGxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 263 2 0 124.172111 0.436975 0.02 2.133965 67 52 1841 1348 60 60 0 0 CC 30.180899 110 1 2999 27 KEEP - Slc35d3 YES MNNG_3 chr10 28583172 28583172 G A exonic Themis nonsynonymous SNV NM_178666:c.G1831A:p.V611I exonic Themis nonsynonymous SNV uc007esp.1:c.G1831A:p.V611I exonic ENSMUSG00000049109 nonsynonymous SNV ENSMUST00000056097:c.G1831A:p.V611I 10qA4 NA NA chr10 28583172 CCAxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 58 0 0 34.346793 0.684211 0.02 -0.166557 6 13 162 333 60 60 0 0 GG 9.9257 33 0 920 0 KEEP + Themis YES MNNG_3 chr10 31040158 31040158 G A intronic Hddc2 NA NA intronic Hddc2 NA NA intronic ENSMUSG00000000295 NA NA 10qA4 NA NA chr10 31040158 TCTxGGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 78 0 0 42.00357 0.516129 0.02 -0.27183 15 16 420 437 60 60 0 0 GG 11.407906 38 0 1031 0 KEEP + Hddc2 YES MNNG_3 chr10 41618026 41618026 C T exonic Sesn1 nonsynonymous SNV NM_001013370:c.C590T:p.A197V exonic Sesn1 nonsynonymous SNV uc007eye.2:c.C767T:p.A256V exonic ENSMUSG00000038332 nonsynonymous SNV ENSMUST00000041438:c.C590T:p.A197V 10qB2 NA NA chr10 41618026 TCGxCGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 194 0 0 93.11557 0.438202 0.02 0.800005 50 39 1287 1010 60 60 0 0 CC 26.366345 88 0 2256 0 KEEP + Sesn1 YES MNNG_3 chr10 43230981 43230981 G A exonic Bend3 synonymous SNV NM_199028:c.G1563A:p.R521R exonic Bend3 synonymous SNV uc011xdl.1:c.G1563A:p.R521R exonic ENSMUSG00000038214 synonymous SNV ENSMUST00000040147:c.G1563A:p.R521R 10qB2 NA NA chr10 43230981 CCGxCGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 124 1 0 42.720884 0.45 0.02 -0.350594 22 18 601 461 60 60 0 0 GG 19.821853 66 0 1789 0 KEEP + Bend3 YES MNNG_3 chr10 44014415 44014415 G A exonic Atg5 nonsynonymous SNV NM_053069:c.G250A:p.G84S exonic Atg5 nonsynonymous SNV uc007ezt.1:c.G250A:p.G84S exonic ENSMUSG00000038160 nonsynonymous SNV ENSMUST00000039286:c.G250A:p.G84S 10qB2 NA NA chr10 44014415 ATTxGTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 128 0 0 35.770218 0.428571 0.02 -0.306879 20 15 564 390 60 60 0 0 GG 20.456893 68 0 1957 0 KEEP + Atg5 YES MNNG_3 chr10 51398218 51398218 G A exonic Rfx6 synonymous SNV NM_001159389:c.G348A:p.K116K exonic Rfx6 synonymous SNV uc007fax.2:c.G348A:p.K116K exonic ENSMUSG00000019900 synonymous SNV ENSMUST00000020054:c.G348A:p.K116K 10qB3 NA NA chr10 51398218 TAAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.99986 41 2 0 17.876206 0.4375 0.02 -0.140308 9 7 256 193 60 60 0 0 GG 5.715835 19 0 546 0 KEEP + Rfx6 YES MNNG_3 chr10 5142337 5142337 C G intergenic "Syne1(dist=132745),Syne1(dist=9497)" NA NA intergenic "Syne1(dist=120181),Syne1(dist=9497)" NA NA exonic ENSMUSG00000019769 nonsynonymous SNV ENSMUST00000056571:c.C17044G:p.P5682A 10qA1 NA NA chr10 5142337 AAGxCAA C G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 89 2 0 38.246097 0.46875 0.02 -0.289345 17 15 466 407 60 60 0 0 CC 11.129305 37 0 1035 0 KEEP NA Syne1 NO MNNG_3 chr10 60574969 60574969 C T exonic Sgpl1 nonsynonymous SNV NM_009163:c.G556A:p.A186T exonic Sgpl1 nonsynonymous SNV uc007ffk.2:c.G556A:p.A186T exonic ENSMUSG00000020097 nonsynonymous SNV ENSMUST00000092498:c.G556A:p.A186T 10qB4 NA NA chr10 60574969 CTGxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 204 0 0 57.935813 0.396825 0.02 0.93939 38 25 1028 644 60 60 0 0 CC 34.241729 114 0 3145 0 KEEP - Sgpl1 YES MNNG_3 chr10 60896516 60896516 C T UTR3 Eif4ebp2 NA NA UTR3 Eif4ebp2 NA NA UTR3 ENSMUSG00000020091 NA NA 10qB4 NA NA chr10 60896516 GCTxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.760887 0.760887 1 122 2 0 26.025306 0.333333 0.02 -0.289379 22 11 623 299 60 60 0 0 CC 17.740729 59 0 1662 0 KEEP - Eif4ebp2 YES MNNG_3 chr10 61723987 61723987 G C exonic Tacr2 nonsynonymous SNV NM_009314:c.G655C:p.V219L exonic Tacr2 nonsynonymous SNV uc007fgx.2:c.G655C:p.V219L exonic ENSMUSG00000020081 nonsynonymous SNV ENSMUST00000020278:c.G655C:p.V219L 10qB4 NA NA chr10 61723987 AGTxTCA G C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 156 0 0 74.609249 0.4375 0.02 1.232313 36 28 986 803 60 60 0 0 GG 19.851921 66 0 1847 0 KEEP + Tacr2 NO MNNG_3 chr10 62478851 62478851 C T exonic Hnrnph3 nonsynonymous SNV NM_001079824:c.G848A:p.G283E exonic Hnrnph3 nonsynonymous SNV uc011xfk.1:c.G524A:p.G175E exonic ENSMUSG00000020069 nonsynonymous SNV ENSMUST00000020263:c.G848A:p.G283E 10qB4 NA NA chr10 62478851 CCTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 250 0 0 85.926577 0.425 0.02 0.993745 46 34 1280 934 60 60 0 0 CC 38.953024 130 0 3611 0 KEEP - Hnrnph3 YES MNNG_3 chr10 62751820 62751820 G A exonic Herc4 synonymous SNV NM_026101:c.G1464A:p.K488K exonic Herc4 synonymous SNV uc007fkc.2:c.G1464A:p.K488K exonic ENSMUSG00000020064 synonymous SNV ENSMUST00000020258:c.G1464A:p.K488K 10qB4 NA NA chr10 62751820 AAAxAAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 67 0 0 40.368031 0.576923 0.02 -0.23661 11 15 298 409 60 60 0 0 GG 9.325804 31 0 890 0 KEEP + Herc4 YES MNNG_3 chr10 67489427 67489427 C T intronic Rtkn2 NA NA intronic Rtkn2 NA NA intronic ENSMUSG00000037846 NA NA 10qB5.1 NA NA chr10 67489427 GCAxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138942 0.139832 0.993634 25 0 0 25.558653 0.75 0.02 -0.105217 3 9 83 242 60 60 0 0 CC 3.608393 12 0 330 0 KEEP + Rtkn2 YES MNNG_3 chr10 74587875 74587875 C T exonic Bcr synonymous SNV NM_001081412:c.C1392T:p.S464S exonic Bcr synonymous SNV uc007fqb.2:c.C1392T:p.S464S exonic ENSMUSG00000009681 synonymous SNV ENSMUST00000164107:c.C1392T:p.S464S 10qC1 NA NA chr10 74587875 TTCxTCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 88 1 0 38.320883 0.441176 0.02 -0.298147 19 15 535 413 60 60 0 0 CC 12.022319 40 0 1109 0 KEEP + Bcr YES MNNG_3 chr10 74619775 74619775 G A intronic Bcr NA NA intronic Bcr NA NA intronic ENSMUSG00000009681 NA NA 10qC1 NA NA chr10 74619775 GCAxGTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 81 2 0 48.343294 0.475 0.02 -0.350654 21 19 569 513 60 60 0 0 GG 9.927385 33 0 946 0 KEEP + Bcr YES MNNG_3 chr10 74994914 74994914 C T intronic Snrpd3 NA NA intronic Snrpd3 NA NA intronic ENSMUSG00000020180 NA NA 10qC1 NA NA chr10 74994914 TTCxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999999 74 0 0 33.185849 0.433333 0.02 -0.263055 17 13 469 359 60 60 0 0 CC 10.526679 35 0 968 0 KEEP + Snrpd3 YES MNNG_3 chr10 75202125 75202125 C T exonic Cabin1 stopgain SNV NM_172549:c.G1830A:p.W610X exonic Cabin1 stopgain SNV uc007fqx.1:c.G1830A:p.W610X exonic ENSMUSG00000020196 stopgain SNV ENSMUST00000001712:c.G1830A:p.W610X 10qC1 NA NA chr10 75202125 CAGxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 85 0 0 18.994412 0.380952 0.02 -0.182757 13 8 333 212 60 60 0 0 CC 14.725087 49 0 1336 0 KEEP - Cabin1 YES MNNG_3 chr10 75940440 75940440 C T intronic Mcm3ap NA NA intronic Mcm3ap NA NA intronic ENSMUSG00000001150 NA NA 10qC1 NA NA chr10 75940440 GGCxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 74 0 0 35.508611 0.424242 0.02 -0.289365 19 14 526 386 60 60 0 0 CC 9.32348 31 0 853 0 KEEP + Mcm3ap YES MNNG_3 chr10 76251257 76251257 C T exonic Pcbp3 nonsynonymous SNV NM_021568:c.G479A:p.G160D exonic Pcbp3 nonsynonymous SNV uc007fuz.2:c.G479A:p.G160D exonic ENSMUSG00000001120 nonsynonymous SNV ENSMUST00000092393:c.G383A:p.G128D 10qC1 NA NA chr10 76251257 GCAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999997 85 0 0 61.011639 0.521739 0.02 -0.403322 22 24 610 634 60 60 0 0 CC 9.624671 32 0 888 0 KEEP - Pcbp3 YES MNNG_3 chr10 76522767 76522767 C T exonic Col18a1 nonsynonymous SNV NM_001109991:c.G3296A:p.G1099E exonic Col18a1 nonsynonymous SNV uc007fvg.1:c.G3296A:p.G1099E exonic ENSMUSG00000001435 nonsynonymous SNV ENSMUST00000072755:c.G4037A:p.G1346E 10qC1 NA NA chr10 76522767 TCCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 143 0 0 50.336539 0.355932 0.02 1.080027 38 21 1053 570 60 60 0 0 CC 19.806423 66 0 1818 0 KEEP - Col18a1 YES MNNG_3 chr10 76729715 76729715 G A exonic Pofut2 nonsynonymous SNV NM_030262:c.G889A:p.D297N exonic Pofut2 nonsynonymous SNV uc007fvj.1:c.G889A:p.D297N exonic ENSMUSG00000020260 nonsynonymous SNV ENSMUST00000020493:c.G889A:p.D297N 10qC1 NA NA chr10 76729715 AAGxACT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 106 0 0 57.838545 0.55 0.02 -0.359412 18 22 495 593 60 60 0 0 GG 15.641826 52 0 1466 0 KEEP + Pofut2 YES MNNG_3 chr10 77299543 77299543 G A UTR3 Krtap10-10 NA NA UTR3 Krtap10-10 NA NA intronic ENSMUSG00000069581 NA NA 10qC1 NA NA chr10 77299543 CAGxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.959852 0.959859 0.999992 101 0 0 61.664605 0.5 0.02 -0.438359 25 25 680 648 60 60 0 0 GG 12.327902 41 0 1130 0 KEEP + Krtap10-10 YES MNNG_3 chr10 77504328 77504328 C T exonic Aire nonsynonymous SNV NM_001271549:c.G572A:p.R191K exonic Aire nonsynonymous SNV uc007fwr.1:c.G572A:p.R191K exonic ENSMUSG00000000731 nonsynonymous SNV ENSMUST00000019257:c.G572A:p.R191K 10qC1 NA NA chr10 77504328 GCTxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 133 0 0 53.915999 0.4 0.02 1.115052 33 22 942 595 60 60 0 0 CC 16.220364 54 0 1510 0 KEEP - Aire YES MNNG_3 chr10 78075180 78075180 C T exonic Olfr1357 nonsynonymous SNV NM_001011737:c.G205A:p.V69I exonic Olfr1357 nonsynonymous SNV uc007fyc.2:c.G205A:p.V69I exonic ENSMUSG00000071185 nonsynonymous SNV ENSMUST00000095473:c.G205A:p.V69I 10qC1 NA NA chr10 78075180 CAAxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 88 3 0 55.5377 0.677419 0.02 -0.271771 10 21 279 540 60 60 0 0 CC 13.532995 45 0 1223 0 KEEP - Olfr1357 YES MNNG_3 chr10 78710550 78710550 T C exonic Vmn2r81 synonymous SNV NM_175936:c.T12C:p.S4S exonic Vmn2r81 synonymous SNV uc007fyp.1:c.T12C:p.S4S exonic ENSMUSG00000055515 synonymous SNV ENSMUST00000020547:c.T12C:p.S4S 10qC1 "Score=0.931388;Name=No.5929,chr10:78818411" NA chr10 78710550 CTCxTGG T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 211 0 1 70.537289 0.373333 0.02 1.037553 47 28 1300 787 60 60 0 0 TT 30.373283 101 0 2818 0 KEEP + Vmn2r81 NO MNNG_3 chr10 79242744 79242744 G A exonic Fstl3 synonymous SNV NM_031380:c.G318A:p.K106K exonic Fstl3 synonymous SNV uc007fzs.2:c.G318A:p.K106K exonic ENSMUSG00000020325 synonymous SNV ENSMUST00000020575:c.G318A:p.K106K 10qC1 NA NA chr10 79242744 CAAxGCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 123 1 0 76.707265 0.527273 0.02 1.212971 26 29 715 794 60 60 0 0 GG 14.427742 53 2 1453 13 KEEP + Fstl3 YES MNNG_3 chr10 79354874 79354874 C T exonic Cfd synonymous SNV NM_013459:c.C498T:p.V166V exonic Cfd synonymous SNV uc007gaj.2:c.C498T:p.V166V exonic ENSMUSG00000061780 synonymous SNV ENSMUST00000061653:c.C498T:p.V166V 10qC1 NA NA chr10 79354874 TGTxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 221 3 0 130.703259 0.597561 0.02 0.879101 33 49 899 1313 60 60 0 0 CC 30.968805 103 0 2879 0 KEEP + Cfd YES MNNG_3 chr10 79446616 79446616 G A intronic Tmem259 NA NA intronic ORF61 NA NA intronic ENSMUSG00000013858 NA NA 10qC1 NA NA chr10 79446616 ACAxCTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 42 0 0 16.335768 0.411765 0.02 -0.157772 10 7 271 180 60 60 0 1 GG 5.715559 19 0 540 0 KEEP - Tmem259 YES MNNG_3 chr10 79469154 79469154 C T intronic Abca7 NA NA intronic Abca7 NA NA intronic ENSMUSG00000035722 NA NA 10qC1 NA NA chr10 79469154 GGTxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 111 0 0 78.442324 0.545455 0.02 1.115095 25 30 702 806 60 60 0 0 CC 12.608427 45 1 1280 8 KEEP + Abca7 YES MNNG_3 chr10 79691137 79691137 C T exonic Mum1 nonsynonymous SNV NM_023431:c.C11T:p.A4V exonic Mum1 nonsynonymous SNV uc007gch.1:c.C11T:p.A4V exonic ENSMUSG00000020156 nonsynonymous SNV ENSMUST00000020365:c.C11T:p.A4V 10qC1 NA NA chr10 79691137 ATGxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 214 5 0 61.719848 0.391304 0.02 0.878639 42 27 1123 689 60 60 0 0 CC 29.477112 98 0 2727 0 KEEP + Mum1 YES MNNG_3 chr10 79844655 79844655 C T exonic Mex3d nonsynonymous SNV NM_198615:c.G1472A:p.G491E exonic Mex3d nonsynonymous SNV uc007gcz.1:c.G1472A:p.G491E exonic ENSMUSG00000048696 nonsynonymous SNV ENSMUST00000062946:c.G1472A:p.G491E 10qC1 NA NA chr10 79844655 TCCxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 97 0 0 35.595133 0.340909 0.02 -0.38581 29 15 802 407 60 60 0 0 CC 13.528726 45 0 1229 0 KEEP - Mex3d YES MNNG_3 chr10 80007071 80007071 C T exonic Rexo1 synonymous SNV NM_025852:c.G2835A:p.G945G exonic Rexo1 synonymous SNV uc007gdq.1:c.G804A:p.G268G exonic ENSMUSG00000047417 synonymous SNV ENSMUST00000057910:c.G2835A:p.G945G 10qC1 NA NA chr10 80007071 ACCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 150 0 0 126.998708 0.551724 0.02 1.030748 39 48 1068 1301 60 60 0 0 CC 15.338971 51 0 1414 0 KEEP - Rexo1 YES MNNG_3 chr10 80266857 80266857 C T exonic Sf3a2 synonymous SNV NM_013651:c.C756T:p.P252P exonic Sf3a2 synonymous SNV uc011xiv.1:c.C756T:p.P252P exonic ENSMUSG00000020211 synonymous SNV ENSMUST00000020432:c.C726T:p.P242P 10qC1 NA NA chr10 80266857 GCCxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 56 0 0 33.319413 0.608696 0.02 -0.208651 9 14 248 335 60 60 0 0 CC 7.511203 25 0 676 0 KEEP + Sf3a2 YES MNNG_3 chr10 80484855 80484855 C T exonic Diras1 synonymous SNV NM_145217:c.G306A:p.K102K exonic Diras1 synonymous SNV uc007gfo.1:c.G306A:p.K102K exonic ENSMUSG00000043670 synonymous SNV ENSMUST00000055125:c.G306A:p.K102K 10qC1 NA NA chr10 80484855 CAAxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 168 0 0 76.1704 0.534483 0.02 1.08888 27 31 744 788 60 60 0 0 CC 26.764707 89 0 2448 0 KEEP - Diras1 YES MNNG_3 chr10 80514939 80514939 C T exonic Sgta nonsynonymous SNV NM_024499:c.G22A:p.A8T exonic Sgta nonsynonymous SNV uc007gft.1:c.G22A:p.A8T exonic ENSMUSG00000004937 nonsynonymous SNV ENSMUST00000005067:c.G22A:p.A8T 10qC1 NA NA chr10 80514939 AGGxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 108 2 0 64.909492 0.595238 0.02 -0.368031 17 25 449 653 60 60 0 0 CC 13.819883 46 0 1258 0 KEEP - Sgta YES MNNG_3 chr10 80642438 80642438 C T exonic Eef2 synonymous SNV NM_007907:c.C1047T:p.A349A exonic Eef2 synonymous SNV uc007gge.2:c.C1047T:p.A349A exonic ENSMUSG00000034994 synonymous SNV ENSMUST00000047864:c.C1047T:p.A349A 10qC1 NA NA chr10 80642438 CGCxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 147 0 0 76.042209 0.441176 0.02 1.098968 38 30 1049 820 60 60 0 0 CC 19.233668 64 0 1747 0 KEEP + Eef2 YES MNNG_3 chr10 80700279 80700279 C T exonic Zfr2 synonymous SNV NM_001034895:c.C231T:p.G77G exonic Zfr2 synonymous SNV uc007ggq.2:c.C231T:p.G77G exonic ENSMUSG00000034949 synonymous SNV ENSMUST00000117798:c.C231T:p.G77G 10qC1 NA NA chr10 80700279 GGGxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.321674 0.322807 0.99649 40 0 0 18.398919 0.470588 0.02 -0.157694 9 8 247 197 60 60 0 0 CC 4.511397 15 0 411 0 KEEP + Zfr2 YES MNNG_3 chr10 80770291 80770291 C T exonic Pip5k1c synonymous SNV NM_001146687:c.C531T:p.F177F exonic Pip5k1c synonymous SNV uc007ghc.2:c.C531T:p.F177F exonic ENSMUSG00000034902 synonymous SNV ENSMUST00000045469:c.C531T:p.F177F 10qC1 NA NA chr10 80770291 CTTxTAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 193 2 0 134.953571 0.554348 0.02 0.781869 41 51 1168 1381 60 60 0 0 CC 23.160567 77 0 2181 0 KEEP + Pip5k1c YES MNNG_3 chr10 80827626 80827626 C T exonic 4930404N11Rik synonymous SNV NM_001014836:c.G183A:p.Q61Q exonic 4930404N11Rik synonymous SNV uc007ghq.2:c.G183A:p.Q61Q exonic ENSMUSG00000020234 synonymous SNV ENSMUST00000020456:c.G183A:p.Q61Q 10qC1 NA NA chr10 80827626 CACxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 152 0 0 92.834103 0.473684 0.02 1.028798 40 36 1120 985 60 60 0 0 CC 18.346238 61 0 1704 0 KEEP - 4930404N11Rik YES MNNG_3 chr10 81090163 81090163 C T intronic Sirt6 NA NA intronic Sirt6 NA NA intronic ENSMUSG00000034748 NA NA 10qC1 NA NA chr10 81090163 TCGxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 143 0 0 66.096542 0.590909 0.02 -0.385172 18 26 475 666 60 60 0 0 CC 26.137721 87 0 2343 0 KEEP - Sirt6 YES MNNG_3 chr10 82213122 82213122 C T UTR3 Nfyb NA NA UTR3 Nfyb NA NA exonic ENSMUSG00000020248 synonymous SNV ENSMUST00000105309:c.G660A:p.E220E 10qC1 NA NA chr10 82213122 AGAxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 273 0 0 101.559512 0.456522 0.02 0.888842 50 42 1375 1091 60 60 0 0 CC 39.095172 130 0 3624 0 KEEP - Nfyb YES MNNG_3 chr10 82746436 82746436 C T intronic Slc41a2 NA NA intronic Slc41a2 NA NA intronic ENSMUSG00000034591 NA NA 10qC1 NA NA chr10 82746436 CCTxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 178 0 0 109.709526 0.531646 0.02 0.904657 37 42 1033 1134 60 60 0 0 CC 23.16226 77 0 2179 0 KEEP - Slc41a2 YES MNNG_3 chr10 83018326 83018326 C T exonic A230046K03Rik nonsynonymous SNV NM_001033375:c.C527T:p.P176L exonic A230046K03Rik nonsynonymous SNV uc007gkj.1:c.C527T:p.P176L exonic ENSMUSG00000034560 nonsynonymous SNV ENSMUST00000038388:c.C527T:p.P176L 10qC1 NA NA chr10 83018326 GACxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 119 2 0 39.038837 0.4 0.02 -0.350753 24 16 679 431 60 60 0 0 CC 17.745425 59 0 1643 0 KEEP + A230046K03Rik YES MNNG_3 chr10 83074194 83074194 C T splicing Appl2(NM_145220:exon13:c.1095+1G>A) NA NA splicing Appl2(uc007gkk.1:exon13:c.1095+1G>A) NA NA splicing ENSMUSG00000020263(ENSMUST00000020500:exon13:c.1095+1G>A) NA NA 10qC1 NA NA chr10 83074194 TTAxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 137 2 0 45.323452 0.344828 0.02 0.974774 38 20 1010 520 60 60 0 0 CC 14.720341 49 0 1327 0 KEEP - Appl2 YES MNNG_3 chr10 84560851 84560851 C T exonic Fhl4 synonymous SNV NM_010214:c.G810A:p.V270V exonic Fhl4 synonymous SNV uc007gla.2:c.G810A:p.V270V exonic ENSMUSG00000050035 synonymous SNV ENSMUST00000059383:c.G810A:p.V270V 10qC1 NA NA chr10 84560851 GTAxACC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 152 0 0 72.257306 0.469697 0.02 0.921436 35 31 955 773 60 60 0 0 CC 21.044712 70 0 1922 0 KEEP - Fhl4 YES MNNG_3 chr10 86296889 86296889 C T exonic Nt5dc3 synonymous SNV NM_175331:c.C1602T:p.A534A exonic Nt5dc3 synonymous SNV uc007gqm.1:c.C1383T:p.A461A exonic ENSMUSG00000054027 synonymous SNV ENSMUST00000099396:c.C1602T:p.A534A 10qC1 NA NA chr10 86296889 TGCxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 171 0 0 106.140559 0.547945 0.02 0.948469 33 40 927 1089 60 60 0 0 CC 22.560073 75 0 2119 0 KEEP + Nt5dc3 YES MNNG_3 chr10 88193604 88193604 C T UTR5 Gm4925 NA NA UTR5 Gm4925 NA NA ncRNA_exonic ENSMUSG00000069540 NA NA 10qC1 NA NA chr10 88193604 TTGxAGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 0.999999 104 0 0 67.199796 0.482759 0.02 1.080258 30 28 825 713 60 60 0 0 CC 10.828924 36 0 1014 0 KEEP - Gm4925 YES MNNG_3 chr10 88227471 88227471 C T exonic Utp20 nonsynonymous SNV NM_175158:c.G5909A:p.G1970D exonic Utp20 nonsynonymous SNV uc007grx.2:c.G5909A:p.G1970D exonic ENSMUSG00000004356 nonsynonymous SNV ENSMUST00000004470:c.G5909A:p.G1970D 10qC1 NA NA chr10 88227471 TTGxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 59 0 0 18.654842 0.380952 0.02 -0.184104 13 8 352 209 60 60 0 0 CC 8.420807 28 0 767 0 KEEP - Utp20 YES MNNG_3 chr10 88443669 88443669 C T intronic Ano4 NA NA intronic Ano4 NA NA intronic ENSMUSG00000035189 NA NA 10qC1 NA NA chr10 88443669 CCTxCGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 58 0 0 35.05949 0.565217 0.02 -0.201684 10 13 281 357 60 60 0 0 CC 9.023965 30 0 846 0 KEEP - Ano4 YES MNNG_3 chr10 89278910 89278910 C T exonic Uhrf1bp1l nonsynonymous SNV NM_029166:c.C4201T:p.P1401S exonic Uhrf1bp1l nonsynonymous SNV uc007gsw.2:c.C880T:p.P294S exonic ENSMUSG00000019951 nonsynonymous SNV ENSMUST00000020112:c.C4201T:p.P1401S 10qC2 NA NA chr10 89278910 AGCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 48 0 0 9.171443 0.285714 0.02 -0.122759 10 4 276 109 60 60 0 0 CC 8.387426 28 0 756 0 KEEP + Uhrf1bp1l YES MNNG_3 chr10 92970187 92970187 C T exonic Hal nonsynonymous SNV NM_010401:c.C1547T:p.P516L exonic Hal nonsynonymous SNV uc007gus.1:c.C1547T:p.P516L exonic ENSMUSG00000020017 nonsynonymous SNV ENSMUST00000129421:c.C1547T:p.P516L 10qC2 NA NA chr10 92970187 ACCxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 58 0 0 12.322368 0.357143 0.02 -0.122775 9 5 259 139 60 60 0 0 CC 9.625743 32 0 902 0 KEEP + Hal YES MNNG_3 chr10 94041176 94041176 C T exonic Tmcc3 synonymous SNV NM_172051:c.C87T:p.R29R exonic Tmcc3 synonymous SNV uc007gvt.2:c.C87T:p.R29R exonic ENSMUSG00000020023 synonymous SNV ENSMUST00000065060:c.C87T:p.R29R 10qC2 NA NA chr10 94041176 CCGxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 111 0 0 31.885975 0.333333 0.02 -0.367516 28 14 747 368 60 60 0 0 CC 15.915117 53 0 1448 0 KEEP + Tmcc3 YES MNNG_3 chr11 100282182 100282182 C T intronic Fkbp10 NA NA intronic Fkbp10 NA NA intronic ENSMUSG00000001555 NA NA 11qD NA NA chr11 100282182 ACCxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 54 0 0 14.765107 0.375 0.02 -0.1403 10 6 277 165 60 60 0 0 CC 9.307162 31 0 825 0 KEEP + Fkbp10 YES MNNG_3 chr11 100616945 100616945 C T intronic Kcnh4 NA NA intronic Kcnh4 NA NA intronic ENSMUSG00000035355 NA NA 11qD NA NA chr11 100616945 CCCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 67 0 0 22.784094 0.529412 0.02 -0.157814 8 9 223 236 60 60 0 1 CC 10.199925 34 0 920 0 KEEP - Kcnh4 YES MNNG_3 chr11 100669668 100669668 C T intronic Stat5b NA NA intronic Stat5b NA NA intronic ENSMUSG00000020919 NA NA 11qD NA NA chr11 100669668 TATxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 60 0 0 45.393298 0.666667 0.02 -0.210457 8 16 225 444 60 60 0 0 CC 9.024218 30 0 853 0 KEEP - Stat5b YES MNNG_3 chr11 100735482 100735482 G A intronic Stat5a NA NA exonic Stat5a nonsynonymous SNV uc007lmn.1:c.G716A:p.G239E intronic ENSMUSG00000004043 NA NA 11qD "Score=0.984561;Name=No.13043,chr11:100658369" NA chr11 100735482 GAGxGAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0.077336 0 24 0 6 9.320159 0.444444 0.02 -0.078876 5 4 133 101 36 46 0 0 GG 3.300965 11 0 287 0 KEEP + Stat5a YES MNNG_3 chr11 100916882 100916882 G A exonic Atp6v0a1 nonsynonymous SNV NM_001243049:c.G2209A:p.G737S exonic Atp6v0a1 nonsynonymous SNV uc007lmx.1:c.G2389A:p.G797S exonic ENSMUSG00000019302 nonsynonymous SNV ENSMUST00000092663:c.G2368A:p.G790S 11qD NA NA chr11 100916882 GAGxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 71 0 0 39.028137 0.517241 0.02 -0.254262 14 15 385 406 60 60 0 0 GG 11.12914 37 0 1029 0 KEEP + Atp6v0a1 YES MNNG_3 chr11 101048267 101048267 C T intronic Cntnap1 NA NA intronic Cntnap1 NA NA intronic ENSMUSG00000017167 NA NA 11qD NA NA chr11 101048267 GGAxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877628 0.877708 0.999909 72 0 0 51.988756 0.525 0.02 -0.350632 19 21 505 540 60 60 0 0 CC 7.216528 24 0 645 0 KEEP + Cntnap1 YES MNNG_3 chr11 101140800 101140800 G A intronic Cntd1 NA NA intronic Cntd1 NA NA intronic ENSMUSG00000078653 NA NA 11qD NA NA chr11 101140800 GTGxATG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 144 0 0 75.971977 0.508772 0.02 1.088751 28 29 792 793 60 60 0 0 GG 18.948489 63 0 1777 0 KEEP + Cntd1 YES MNNG_3 chr11 101635487 101635487 C T exonic Etv4 synonymous SNV NM_008815:c.G453A:p.Q151Q exonic Etv4 synonymous SNV uc007lps.1:c.G360A:p.Q120Q exonic ENSMUSG00000017724 synonymous SNV ENSMUST00000017868:c.G456A:p.Q152Q 11qD NA NA chr11 101635487 GGGxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 209 0 0 94.896657 0.464286 0.02 0.949986 45 39 1249 1015 60 60 0 0 CC 27.967401 93 0 2578 0 KEEP - Etv4 YES MNNG_3 chr11 102214016 102214016 G A intronic Slc4a1 NA NA intronic Slc4a1 NA NA intronic ENSMUSG00000006574 NA NA 11qD NA NA chr11 102214016 TAGxGAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 52 0 0 44.692288 0.666667 0.02 -0.210448 8 16 224 437 60 60 0 0 GG 6.918401 23 0 645 0 KEEP - Slc4a1 YES MNNG_3 chr11 102340657 102340657 G A exonic Gpatch8 nonsynonymous SNV NM_001159492:c.C3368T:p.A1123V exonic Gpatch8 nonsynonymous SNV uc007lsb.2:c.C2726T:p.A909V exonic ENSMUSG00000034621 nonsynonymous SNV ENSMUST00000143842:c.C3368T:p.A1123V 11qE1 NA NA chr11 102340657 CCAxCCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 107 1 0 58.605332 0.48 0.02 1.053417 26 24 717 622 60 60 0 0 GG 14.436903 48 0 1324 0 KEEP - Gpatch8 YES MNNG_3 chr11 102639414 102639414 G A UTR3 Adam11 NA NA UTR3 Adam11 NA NA UTR3 ENSMUSG00000020926 NA NA 11qE1 NA NA chr11 102639414 CAAxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 113 3 0 47.584328 0.463415 0.02 -0.359018 22 19 592 508 60 60 0 0 GG 16.843438 56 0 1569 0 KEEP + Adam11 YES MNNG_3 chr11 103720387 103720387 G A intronic Nsf NA NA intronic Nsf NA NA intronic ENSMUSG00000034187 NA NA 11qE1 NA NA chr11 103720387 GCAxGGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138942 0.139832 0.993634 26 0 0 25.95929 0.75 0.02 -0.10522 3 9 82 246 60 60 0 0 GG 3.609658 12 0 338 0 KEEP - Nsf YES MNNG_3 chr11 104014809 104014809 G A intronic Crhr1 NA NA intronic Crhr1 NA NA intronic ENSMUSG00000018634 NA NA 11qE1 NA NA chr11 104014809 ACAxTGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 232 0 0 89.154343 0.467532 0.02 0.922231 41 36 1147 951 60 60 0 0 GG 37.300948 124 0 3526 0 KEEP + Crhr1 YES MNNG_3 chr11 105045598 105045598 G A exonic Tlk2 nonsynonymous SNV NM_001112705:c.G71A:p.G24D exonic Tlk2 nonsynonymous SNV uc007lxd.2:c.G71A:p.G24D exonic ENSMUSG00000020694 nonsynonymous SNV ENSMUST00000015107:c.G71A:p.G24D 11qE1 NA NA chr11 105045598 TTGxTGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 280 2 0 105.42671 0.483146 0.02 0.710944 46 43 1261 1117 60 60 0 0 GG 41.183322 137 0 3745 0 KEEP + Tlk2 YES MNNG_3 chr11 105251844 105251844 G A exonic March10 nonsynonymous SNV NM_172568:c.C928T:p.P310S exonic March10 nonsynonymous SNV uc007lxj.2:c.C928T:p.P310S exonic ENSMUSG00000078627 nonsynonymous SNV ENSMUST00000049995:c.C928T:p.P310S 11qE1 NA NA chr11 105251844 GAGxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 87 0 0 51.494594 0.5 0.02 -0.359499 20 20 561 540 60 60 0 0 GG 11.130496 37 0 1055 0 KEEP - March10 YES MNNG_3 chr11 105258388 105258388 C T exonic March10 nonsynonymous SNV NM_172568:c.G401A:p.R134K exonic March10 nonsynonymous SNV uc007lxj.2:c.G401A:p.R134K exonic ENSMUSG00000078627 nonsynonymous SNV ENSMUST00000049995:c.G401A:p.R134K 11qE1 NA NA chr11 105258388 TTCxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 73 0 0 62.404406 0.621622 0.02 -0.324441 14 23 401 621 60 60 0 0 CC 8.411142 28 0 786 0 KEEP - March10 YES MNNG_3 chr11 105834822 105834822 C T exonic Ace nonsynonymous SNV NM_001281819:c.C1474T:p.R492C exonic Ace nonsynonymous SNV uc007lxu.1:c.C1474T:p.R492C exonic ENSMUSG00000020681 nonsynonymous SNV ENSMUST00000001963:c.C1474T:p.R492C 11qE1 NA NA chr11 105834822 TCTxGCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 105 0 0 66.976047 0.52 0.02 1.159223 24 26 586 696 60 60 0 0 CC 11.113167 37 0 903 0 KEEP + Ace YES MNNG_3 chr11 106126497 106126497 C T exonic Smarcd2 synonymous SNV NM_031878:c.G942A:p.Q314Q exonic Smarcd2 synonymous SNV uc007lyo.2:c.G942A:p.Q314Q exonic ENSMUSG00000078619 synonymous SNV ENSMUST00000140255:c.G249A:p.Q83Q 11qE1 NA NA chr11 106126497 GACxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 87 2 0 53.930715 0.588235 0.02 -0.298127 14 20 389 544 60 60 0 0 CC 10.813584 36 0 999 0 KEEP - Smarcd2 YES MNNG_3 chr11 106163042 106163042 G A intronic Gh NA NA intronic Gh NA NA intronic ENSMUSG00000020713 NA NA 11qE1 NA NA chr11 106163042 TTTxCGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 265 4 0 109.001157 0.469388 0.02 0.632072 52 46 1443 1165 60 60 0 0 GG 36.692577 122 0 3413 0 KEEP - Gh YES MNNG_3 chr11 106240007 106240007 C T exonic Icam2 nonsynonymous SNV NM_010494:c.G599A:p.G200E exonic Icam2 nonsynonymous SNV uc007lyx.1:c.G599A:p.G200E exonic ENSMUSG00000001029 nonsynonymous SNV ENSMUST00000001055:c.G599A:p.G200E 11qE1 NA NA chr11 106240007 TACxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099257 0.099721 0.995343 27 0 0 11.444442 0.5 0.02 -0.08737 5 5 142 121 60 60 0 0 CC 4.211132 14 0 391 0 KEEP - Icam2 YES MNNG_3 chr11 107531478 107531478 C T exonic Helz nonsynonymous SNV NM_198298:c.C4051T:p.P1351S exonic Helz nonsynonymous SNV uc007maw.1:c.C1783T:p.P595S exonic ENSMUSG00000020721 nonsynonymous SNV ENSMUST00000133862:c.C2005T:p.P669S 11qE1 NA NA chr11 107531478 GCAxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 127 3 0 67.031481 0.519231 0.02 1.044129 25 27 680 698 60 60 0 0 CC 16.842939 56 0 1540 0 KEEP + Helz YES MNNG_3 chr11 113420772 113420772 G A intronic Slc39a11 NA NA intronic Slc39a11 NA NA intronic ENSMUSG00000041654 NA NA 11qE2 NA NA chr11 113420772 CCAxCCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 161 0 0 52.127264 0.4375 0.02 -0.42089 27 21 759 564 60 60 0 0 GG 24.065819 80 0 2284 0 KEEP - Slc39a11 YES MNNG_3 chr11 114641064 114641064 G A intronic Kif19a NA NA intronic Kif19a NA NA intronic ENSMUSG00000010021 NA NA 11qE2 NA NA chr11 114641064 GAGxCAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 85 0 0 52.759553 0.552632 0.02 -0.333146 17 21 468 541 60 60 0 0 GG 10.511677 35 0 950 0 KEEP + Kif19a YES MNNG_3 chr11 115215749 115215749 G A exonic Hid1 nonsynonymous SNV NM_175454:c.C1436T:p.P479L exonic C630004H02Rik nonsynonymous SNV uc007mhg.1:c.C1436T:p.P479L exonic ENSMUSG00000034586 nonsynonymous SNV ENSMUST00000044152:c.C1433T:p.P478L 11qE2 NA NA chr11 115215749 AGGxGTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 151 0 0 85.300545 0.52381 0.02 1.044993 30 33 823 885 60 60 0 0 GG 23.457006 78 0 2155 0 KEEP - Hid1 YES MNNG_3 chr11 115217757 115217757 G A intronic Hid1 NA NA intronic C630004H02Rik NA NA intronic ENSMUSG00000034586 NA NA 11qE2 NA NA chr11 115217757 ATGxTGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.99986 54 0 0 28.565494 0.444444 0.02 -0.236706 15 12 404 309 60 60 0 0 GG 5.714418 19 0 519 0 KEEP - Hid1 YES MNNG_3 chr11 115751770 115751770 G A intergenic "Llgl2(dist=34676),Recql5(dist=2139)" NA NA exonic Myo15b nonsynonymous SNV uc007miw.1:c.G545A:p.G182E exonic ENSMUSG00000034427 nonsynonymous SNV ENSMUST00000167507:c.G608A:p.G203E 11qE2 NA NA chr11 115751770 AAGxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 64 0 0 29.62368 0.428571 0.02 -0.245358 16 12 428 322 60 60 0 0 GG 8.721499 29 0 802 0 KEEP NA Llgl2 YES MNNG_3 chr11 115766468 115766468 G A splicing Smim5 NA NA splicing 2210020M01Rik NA NA ncRNA_splicing "ENSMUSG00000048442(ENSMUST00000152171:exon2:c.378-1G>A,ENSMUST00000142089:exon3:c.323-1G>A,ENSMUST00000131566:exon2:c.142-1G>A)" NA NA 11qE2 NA NA chr11 115766468 GCAxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 127 4 0 58.285521 0.46 0.02 -0.438427 27 23 761 623 60 60 0 0 GG 18.337872 61 0 1713 0 KEEP + Smim5 YES MNNG_3 chr11 116089457 116089457 G A exonic Evpl nonsynonymous SNV NM_025276:c.C1805T:p.A602V exonic Evpl nonsynonymous SNV uc007mkp.1:c.C1805T:p.A602V exonic ENSMUSG00000034282 nonsynonymous SNV ENSMUST00000037007:c.C1805T:p.A602V 11qE2 NA NA chr11 116089457 GCAxCGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 96 0 0 71.865616 0.595745 0.02 -0.412005 19 28 520 723 60 60 0 0 GG 12.329607 41 0 1145 0 KEEP - Evpl YES MNNG_3 chr11 116404065 116404065 G A intronic Ube2o NA NA intronic Ube2o NA NA intronic ENSMUSG00000020802 NA NA 11qE2 NA NA chr11 116404065 CCGxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 74 0 0 36.380891 0.538462 0.02 -0.227967 12 14 330 375 60 60 0 0 GG 12.931089 43 0 1197 0 KEEP - Ube2o YES MNNG_3 chr11 116404129 116404129 G A exonic Ube2o synonymous SNV NM_173755:c.C2076T:p.N692N exonic Ube2o synonymous SNV uc007mlm.1:c.C405T:p.N135N exonic ENSMUSG00000020802 synonymous SNV ENSMUST00000082152:c.C2076T:p.N692N 11qE2 NA NA chr11 116404129 CGAxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 113 0 0 39.517775 0.470588 0.02 -0.298108 18 16 502 421 60 60 0 0 GG 13.969291 54 1 1522 21 KEEP - Ube2o YES MNNG_3 chr11 116405183 116405183 G A exonic Ube2o stopgain SNV NM_173755:c.C1765T:p.R589X exonic Ube2o stopgain SNV uc007mln.1:c.C1765T:p.R589X exonic ENSMUSG00000020802 stopgain SNV ENSMUST00000082152:c.C1765T:p.R589X 11qE2 NA NA chr11 116405183 CTCxCTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 171 0 0 57.87006 0.403226 0.02 0.947877 37 25 932 641 60 60 0 0 GG 27.347987 91 0 2308 0 KEEP - Ube2o YES MNNG_3 chr11 116702621 116702621 G A exonic Jmjd6 synonymous SNV NM_033398:c.C567T:p.D189D exonic Jmjd6 synonymous SNV uc007mmi.1:c.C567T:p.D189D exonic ENSMUSG00000056962 synonymous SNV ENSMUST00000140349:c.C423T:p.D141D 11qE2 NA NA chr11 116702621 AGGxTCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 139 0 0 66.128488 0.482143 0.02 1.1064 29 27 781 701 60 60 0 0 GG 21.64373 72 0 1931 0 KEEP - Jmjd6 YES MNNG_3 chr11 116713329 116713329 C T intronic Srsf2 NA NA intronic Srsf2 NA NA intronic "ENSMUSG00000034120,ENSMUSG00000090266" NA NA 11qE2 NA NA chr11 116713329 AGAxATT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 70 1 0 23.38839 0.354839 0.02 -0.271743 20 11 539 269 60 60 0 0 CC 11.725187 39 0 1026 0 KEEP - Srsf2 YES MNNG_3 chr11 116713480 116713480 G A exonic Srsf2 synonymous SNV NM_011358:c.C528T:p.V176V exonic Srsf2 synonymous SNV uc007mmn.2:c.C528T:p.V176V exonic ENSMUSG00000034120 nonsynonymous SNV ENSMUST00000092403:c.C659T:p.S220F 11qE2 NA NA chr11 116713480 GGAxACG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 352 1 0 147.392003 0.518182 0.02 2.328103 53 57 1485 1533 60 60 0 0 GG 57.743553 192 0 5427 0 KEEP - Srsf2 YES MNNG_3 chr11 116829877 116829877 G A intronic Mgat5b NA NA intronic Mgat5b NA NA intronic ENSMUSG00000043857 NA NA 11qE2 NA NA chr11 116829877 CAGxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 84 0 0 43.599672 0.472222 0.02 -0.315524 19 17 519 463 60 60 0 0 GG 11.711683 39 0 1088 0 KEEP + Mgat5b YES MNNG_3 chr11 117584523 117584523 G A exonic Tnrc6c nonsynonymous SNV NM_198022:c.G2672A:p.G891E exonic Tnrc6c nonsynonymous SNV uc007mnk.1:c.G2042A:p.G681E exonic ENSMUSG00000025571 nonsynonymous SNV ENSMUST00000138299:c.G2192A:p.G731E 11qE2 NA NA chr11 117584523 GAGxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 109 1 0 87.331214 0.627451 0.02 1.150192 19 32 528 867 60 60 0 0 GG 13.528748 45 0 1256 0 KEEP + Tnrc6c YES MNNG_3 chr11 117636954 117636954 G A exonic Tmc6 synonymous SNV NM_145439:c.C837T:p.D279D exonic Tmc6 synonymous SNV uc007mnn.2:c.C57T:p.D19D exonic ENSMUSG00000025572 synonymous SNV ENSMUST00000106338:c.C57T:p.D19D 11qE2 NA NA chr11 117636954 TGGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582561 0.58293 0.999366 51 0 0 26.251849 0.423077 0.02 -0.227964 15 11 416 287 60 60 0 0 GG 5.112554 17 0 460 0 KEEP - Tmc6 YES MNNG_3 chr11 117935614 117935614 G A exonic Dnah17 synonymous SNV NM_001167746:c.C6915T:p.V2305V exonic Dnahc17 synonymous SNV uc007moo.2:c.C6915T:p.V2305V exonic ENSMUSG00000033987 synonymous SNV ENSMUST00000132685:c.C4071T:p.V1357V 11qE2 NA NA chr11 117935614 GATxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 286 0 0 144.202117 0.468254 0.02 2.081161 67 59 1903 1539 60 60 0 0 GG 36.380333 121 0 3426 0 KEEP - Dnah17 YES MNNG_3 chr11 118193766 118193766 G A exonic BC100451 nonsynonymous SNV NM_021440:c.C1565T:p.A522V exonic BC100451 nonsynonymous SNV uc007mox.2:c.C1565T:p.A522V exonic ENSMUSG00000076433 nonsynonymous SNV ENSMUST00000168100:c.C1565T:p.A522V 11qE2 NA NA chr11 118193766 CTGxCTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851947 0.851984 0.999957 74 0 0 26.632174 0.315789 0.02 -0.333197 26 12 730 312 60 60 0 0 GG 7.774698 26 0 704 0 KEEP - BC100451 YES MNNG_3 chr11 118343952 118343952 G A exonic Engase nonsynonymous SNV NM_172573:c.G806A:p.S269N exonic Engase nonsynonymous SNV uc007mpi.1:c.G806A:p.S269N exonic ENSMUSG00000033857 nonsynonymous SNV ENSMUST00000135383:c.G806A:p.S269N 11qE2 NA NA chr11 118343952 AGAxCGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 114 0 0 55.218894 0.45098 0.02 1.150224 28 23 770 595 60 60 0 0 GG 15.338946 51 0 1404 0 KEEP + Engase YES MNNG_3 chr11 118849535 118849535 G A exonic Enpp7 nonsynonymous SNV NM_001030291:c.G5A:p.G2E exonic Enpp7 nonsynonymous SNV uc007mpr.1:c.G5A:p.G2E exonic ENSMUSG00000046697 nonsynonymous SNV ENSMUST00000092373:c.G5A:p.G2E 11qE2 NA NA chr11 118849535 TGGxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 211 0 0 95.928029 0.481013 0.02 1.002948 41 38 1144 1016 60 60 0 0 GG 29.420331 98 0 2720 0 KEEP + Enpp7 YES MNNG_3 chr11 119070306 119070306 G A exonic Tbc1d16 synonymous SNV NM_172443:c.C555T:p.I185I exonic Tbc1d16 synonymous SNV uc007mqa.2:c.C555T:p.I185I exonic ENSMUSG00000039976 synonymous SNV ENSMUST00000036113:c.C555T:p.I185I 11qE2 NA NA chr11 119070306 CAGxATC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 311 4 0 135.776528 0.486239 0.02 2.336824 56 53 1569 1433 60 60 0 0 GG 44.140571 147 0 4044 0 KEEP - Tbc1d16 YES MNNG_3 chr11 119776770 119776770 G A exonic Chmp6 nonsynonymous SNV NM_001085498:c.G107A:p.R36K exonic Chmp6 nonsynonymous SNV uc007mrd.2:c.G107A:p.R36K exonic ENSMUSG00000025371 nonsynonymous SNV ENSMUST00000026434:c.G107A:p.R36K 11qE2 NA NA chr11 119776770 AGAxGGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 25 0 0 26.058967 0.75 0.02 -0.105226 3 9 86 247 60 60 0 0 GG 3.308813 11 0 309 0 KEEP + Chmp6 YES MNNG_3 chr11 119860612 119860612 G A splicing "Baiap2(NM_130862:exon12:c.1503+1G>A,NM_001037754:exon12:c.1383+1G>A,NM_001037755:exon12:c.1503+1G>A)" NA NA splicing "Baiap2(uc007mrg.1:exon12:c.1503+1G>A,uc007mrh.1:exon12:c.1383+1G>A,uc007mri.1:exon12:c.1503+1G>A,uc007mrj.2:exon12:c.1503+1G>A)" NA NA splicing "ENSMUSG00000025372(ENSMUST00000106233:exon12:c.1503+1G>A,ENSMUST00000103021:exon12:c.1383+1G>A,ENSMUST00000075180:exon12:c.1503+1G>A,ENSMUST00000106231:exon12:c.1503+1G>A,ENSMUST00000026436:exon12:c.1503+1G>A)" NA NA 11qE2 NA NA chr11 119860612 CAGxTGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 170 2 0 112.502183 0.578947 0.02 0.931057 32 44 871 1140 60 60 0 0 GG 20.7513 69 0 1884 0 KEEP + Baiap2 YES MNNG_3 chr11 119928095 119928095 G A intronic Azi1 NA NA intronic Azi1 NA NA intronic ENSMUSG00000039781 NA NA 11qE2 NA NA chr11 119928095 GCAxACT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229143 0.229173 0.999869 42 0 0 14.37665 0.4 0.02 -0.13153 9 6 257 159 60 60 0 0 GG 6.316965 21 0 595 0 KEEP - Azi1 YES MNNG_3 chr11 120208985 120208985 G A exonic Actg1 synonymous SNV NM_009609:c.C328T:p.L110L exonic Actg1 synonymous SNV uc007msi.1:c.C328T:p.L110L exonic ENSMUSG00000062825 synonymous SNV ENSMUST00000128055:c.C499T:p.L167L 11qE2 "Score=0.994048;Name=No.15302,chr4:103235990" NA chr11 120208985 TCAxGGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 223 2 15 98.468958 0.453488 0.02 0.941139 47 39 1314 1056 60 60 0 0 GG 28.577316 95 0 2693 0 KEEP - Actg1 YES MNNG_3 chr11 120672031 120672031 G A exonic Fasn nonsynonymous SNV NM_007988:c.C5822T:p.S1941L exonic Fasn nonsynonymous SNV uc007mut.1:c.C5822T:p.S1941L exonic ENSMUSG00000025153 nonsynonymous SNV ENSMUST00000055655:c.C5822T:p.S1941L 11qE2 NA NA chr11 120672031 AGTxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 96 1 0 43.802324 0.413043 0.02 -0.403153 27 19 756 483 60 60 0 0 GG 12.334194 41 0 1179 0 KEEP - Fasn YES MNNG_3 chr11 120833042 120833042 G A intronic Csnk1d NA NA intronic Csnk1d NA NA intronic ENSMUSG00000025162 NA NA 11qE2 NA NA chr11 120833042 CAAxAAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 88 0 0 27.299077 0.392857 0.02 -0.245535 17 11 482 302 60 60 0 0 GG 14.139067 47 0 1350 0 KEEP - Csnk1d YES MNNG_3 chr11 120917501 120917501 G A intronic Sectm1b NA NA intronic Sectm1b NA NA intronic ENSMUSG00000039364 NA NA 11qE2 NA NA chr11 120917501 CTAxTAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 99 0 0 57.132078 0.55 0.02 -0.350723 18 22 503 586 60 60 0 0 GG 14.137098 47 0 1334 0 KEEP - Sectm1b YES MNNG_3 chr11 121303047 121303047 G A UTR3 Fn3k NA NA UTR3 Fn3k NA NA UTR3 ENSMUSG00000025175 NA NA 11qE2 NA NA chr11 121303047 GAGxGGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 109 2 0 26.053027 0.323529 0.02 -0.298142 23 11 642 301 60 60 0 0 GG 16.221272 54 0 1479 0 KEEP + Fn3k YES MNNG_3 chr11 30549362 30549362 C T exonic Acyp2 synonymous SNV NM_029344:c.G18A:p.R6R exonic Acyp2 synonymous SNV uc007ihw.1:c.G18A:p.R6R exonic ENSMUSG00000060923 synonymous SNV ENSMUST00000074613:c.G18A:p.R6R 11qA4 NA NA chr11 30549362 CAGxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 155 0 0 87.720244 0.566667 0.02 1.072061 26 34 693 893 60 60 0 0 CC 20.142464 67 0 1827 0 KEEP - Acyp2 YES MNNG_3 chr11 32113342 32113342 C T exonic Rhbdf1 nonsynonymous SNV NM_010117:c.G1129A:p.V377M exonic Rhbdf1 nonsynonymous SNV uc007ijb.2:c.G1129A:p.V377M exonic ENSMUSG00000020282 nonsynonymous SNV ENSMUST00000020524:c.G1129A:p.V377M 11qA4 NA NA chr11 32113342 CCAxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 286 3 0 125.483218 0.444444 0.02 1.965448 65 52 1793 1356 60 60 0 0 CC 40.549817 135 0 3643 0 KEEP - Rhbdf1 YES MNNG_3 chr11 32633543 32633543 G A exonic Fbxw11 nonsynonymous SNV NM_001271349:c.G731A:p.G244D exonic Fbxw11 nonsynonymous SNV uc007ika.1:c.G731A:p.G244D exonic ENSMUSG00000020271 nonsynonymous SNV ENSMUST00000082313:c.G872A:p.G291D 11qA4 NA NA chr11 32633543 CGGxCCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 63 0 0 26.296393 0.44 0.02 -0.227956 14 11 387 285 60 60 0 0 GG 8.702337 29 0 782 0 KEEP + Fbxw11 YES MNNG_3 chr11 3426255 3426255 G A intronic Smtn NA NA intronic Smtn NA NA intronic ENSMUSG00000020439 NA NA 11qA1 NA NA chr11 3426255 AGAxCGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 190 0 0 110.500225 0.488889 0.02 0.888763 46 44 1271 1166 60 60 0 0 GG 23.763923 79 0 2248 0 KEEP - Smtn YES MNNG_3 chr11 35822248 35822248 C T exonic Tenm2 synonymous SNV NM_011856:c.G7584A:p.L2528L exonic Odz2 synonymous SNV uc011xtd.1:c.G7491A:p.L2497L exonic ENSMUSG00000049336 synonymous SNV ENSMUST00000109310:c.G7491A:p.L2497L 11qA4 NA NA chr11 35822248 AGCxAGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 77 1 0 39.191523 0.5 0.02 -0.280563 16 16 453 412 60 60 0 0 CC 11.430746 38 0 1076 0 KEEP - Tenm2 YES MNNG_3 chr11 35837900 35837900 G T exonic Tenm2 nonsynonymous SNV NM_011856:c.C6308A:p.P2103H exonic Odz2 nonsynonymous SNV uc011xtd.1:c.C6215A:p.P2072H exonic ENSMUSG00000049336 nonsynonymous SNV ENSMUST00000109310:c.C6215A:p.P2072H 11qA4 NA NA chr11 35837900 ACAxGAA G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 138 0 0 83.002822 0.568966 0.02 0.982743 25 33 706 845 60 60 0 0 GG 21.958319 73 0 2052 0 KEEP - Tenm2 NO MNNG_3 chr11 45766385 45766385 G A exonic Thg1l synonymous SNV NM_001080969:c.C390T:p.A130A exonic Thg1l synonymous SNV uc007inv.1:c.C390T:p.A130A exonic ENSMUSG00000011254 synonymous SNV ENSMUST00000011398:c.C390T:p.A130A 11qB1.1 NA NA chr11 45766385 GGAxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 41 0 0 11.869932 0.3125 0.02 -0.157846 11 5 311 138 60 60 0 0 GG 5.414365 18 0 506 0 KEEP - Thg1l YES MNNG_3 chr11 4840984 4840984 T G exonic Nefh nonsynonymous SNV NM_010904:c.A1637C:p.K546T exonic Nefh nonsynonymous SNV uc007hvm.1:c.A1637C:p.K546T exonic ENSMUSG00000020396 nonsynonymous SNV ENSMUST00000020667:c.A1667C:p.K556T 11qA1 NA NA chr11 4840984 GACxTGG T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 403 4 0 105.826186 0.346405 0.02 3.3463 100 53 2732 1235 60 60 0 0 TT 59.437905 198 0 5418 0 KEEP - Nefh NO MNNG_3 chr11 50121068 50121068 G A exonic Canx nonsynonymous SNV NM_001110499:c.C628T:p.P210S exonic Canx nonsynonymous SNV uc007isf.2:c.C628T:p.P210S exonic ENSMUSG00000020368 nonsynonymous SNV ENSMUST00000020637:c.C628T:p.P210S 11qB1.3 NA NA chr11 50121068 TGGxATT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 101 2 0 53.482238 0.44 0.02 -0.438186 28 22 776 579 60 60 0 0 GG 11.731965 39 0 1109 0 KEEP - Canx YES MNNG_3 chr11 53291838 53291838 G A exonic Sowaha synonymous SNV NM_183173:c.C1572T:p.S524S exonic Ankrd43 synonymous SNV uc007iwf.1:c.C1572T:p.S524S exonic ENSMUSG00000044352 synonymous SNV ENSMUST00000104955:c.C1572T:p.S524S 11qB1.3 NA NA chr11 53291838 GAAxGAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 80 0 0 37.835208 0.416667 0.02 -0.315683 21 15 591 413 60 60 0 0 GG 11.12245 37 0 1028 0 KEEP - Sowaha YES MNNG_3 chr11 53408378 53408378 G A exonic Kif3a synonymous SNV NM_008443:c.G1734A:p.E578E exonic Kif3a synonymous SNV uc007iwn.1:c.G1725A:p.E575E exonic ENSMUSG00000018395 synonymous SNV ENSMUST00000057330:c.G1725A:p.E575E 11qB1.3 NA NA chr11 53408378 GGAxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162446 0.162467 0.999869 41 0 0 25.30476 0.692308 0.02 -0.113993 4 9 114 245 60 60 0 0 GG 6.317635 21 0 606 0 KEEP + Kif3a YES MNNG_3 chr11 53412229 53412229 C T exonic Kif3a synonymous SNV NM_008443:c.C1953T:p.S651S exonic Kif3a synonymous SNV uc007iwn.1:c.C1944T:p.S648S exonic ENSMUSG00000018395 synonymous SNV ENSMUST00000130037:c.C405T:p.S135S 11qB1.3 NA NA chr11 53412229 TTCxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 171 0 0 78.82528 0.438356 0.02 0.957342 41 32 1125 853 60 60 0 0 CC 22.259993 74 0 2091 0 KEEP + Kif3a YES MNNG_3 chr11 54141897 54141897 T A intronic Acsl6 NA NA intronic Acsl6 NA NA intronic ENSMUSG00000020333 NA NA 11qB1.3 NA NA chr11 54141897 TTTxCTT T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322777 0.322807 0.999909 49 0 0 18.742999 0.444444 0.02 -0.157802 10 8 272 203 60 60 0 1 TT 7.197272 24 0 635 0 KEEP + Acsl6 NO MNNG_3 chr11 54141898 54141898 C T intronic Acsl6 NA NA intronic Acsl6 NA NA intronic ENSMUSG00000020333 NA NA 11qB1.3 NA NA chr11 54141898 TTTxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322777 0.322807 0.999909 50 0 0 21.970113 0.5 0.02 -0.157814 9 9 254 231 60 60 0 1 CC 7.203431 24 0 644 0 KEEP + Acsl6 YES MNNG_3 chr11 55124782 55124782 C T exonic Fat2 nonsynonymous SNV NM_001029988:c.G967A:p.A323T exonic Fat2 nonsynonymous SNV uc007izf.1:c.G967A:p.A323T exonic ENSMUSG00000055333 nonsynonymous SNV ENSMUST00000108864:c.G967A:p.A323T 11qB1.3 NA NA chr11 55124782 CCGxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 254 0 0 144.901304 0.54902 0.02 2.105691 46 56 1276 1487 60 60 0 0 CC 36.365789 121 0 3330 0 KEEP - Fat2 YES MNNG_3 chr11 58364864 58364864 C T exonic Olfr328 synonymous SNV NM_146502:c.G876A:p.R292R exonic Olfr328 synonymous SNV uc007jbt.1:c.G876A:p.R292R exonic ENSMUSG00000057654 synonymous SNV ENSMUST00000073933:c.G876A:p.R292R 11qB1.3 "Score=0.931324;Name=No.12977,chr11:58356045" NA chr11 58364864 ATTxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 210 2 1 112.555202 0.52439 0.02 0.790656 39 43 1092 1167 60 60 0 0 CC 28.876349 96 0 2715 0 KEEP - Olfr328 YES MNNG_3 chr11 58515642 58515642 C T exonic Olfr319 synonymous SNV NM_146500:c.C438T:p.A146A exonic Olfr319 synonymous SNV uc007jcb.1:c.C438T:p.A146A exonic ENSMUSG00000064044 synonymous SNV ENSMUST00000076965:c.C438T:p.A146A 11qB1.3 "Score=0.924063;Name=No.12981,chr11:58533603" NA chr11 58515642 CGCxAGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 97 1 0 70.590052 0.54 0.02 1.150184 23 27 632 727 60 60 0 0 CC 12.030191 40 0 1114 0 KEEP + Olfr319 YES MNNG_3 chr11 58612181 58612181 C T exonic Fam183b synonymous SNV NM_029283:c.G156A:p.R52R exonic Fam183b synonymous SNV uc007jcg.2:c.G156A:p.R52R exonic ENSMUSG00000049154 synonymous SNV ENSMUST00000094156:c.G156A:p.R52R 11qB1.3 NA NA chr11 58612181 CTTxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 58 0 0 8.90185 0.25 0.02 -0.184148 12 4 340 109 60 60 0 0 CC 8.72373 29 0 826 0 KEEP - Fam183b YES MNNG_3 chr11 58780248 58780248 C T intronic Trim17 NA NA ncRNA_exonic AK009977 NA NA ncRNA_exonic ENSMUSG00000085379 NA NA 11qB1.3 NA NA chr11 58780248 CTGxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227714 0.229173 0.993634 30 0 0 26.116402 0.666667 0.02 -0.131494 5 10 138 255 60 60 0 0 CC 3.609183 12 0 330 0 KEEP + Trim17 YES MNNG_3 chr11 59187637 59187637 C T intronic Prss38 NA NA intronic Prss38 NA NA intronic ENSMUSG00000049291 NA NA 11qB1.3 NA NA chr11 59187637 GCTxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 37 0 0 28.127584 0.714286 0.02 -0.12275 4 10 112 270 60 60 0 0 CC 5.709426 19 0 521 0 KEEP - Prss38 YES MNNG_3 chr11 60592582 60592582 C T exonic Smcr8 synonymous SNV NM_001085440:c.C1053T:p.Y351Y exonic Smcr8 synonymous SNV uc007jgn.1:c.C1053T:p.Y351Y exonic ENSMUSG00000049323 synonymous SNV ENSMUST00000056907:c.C1053T:p.Y351Y 11qB2 NA NA chr11 60592582 CTAxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 135 0 0 81.564967 0.507692 0.02 1.027528 32 33 865 854 60 60 0 0 CC 17.439579 58 0 1579 0 KEEP + Smcr8 YES MNNG_3 chr11 62187074 62187074 C T exonic Ncor1 nonsynonymous SNV NM_001252313:c.G2233A:p.E745K exonic Ncor1 nonsynonymous SNV uc007jiz.1:c.G982A:p.E328K exonic ENSMUSG00000018501 nonsynonymous SNV ENSMUST00000155712:c.G181A:p.E61K 11qB2 NA NA chr11 62187074 CTTxAAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353909 0.353947 0.999892 53 0 0 21.268271 0.5 0.02 -0.166562 9 9 256 224 60 60 0 0 CC 6.919437 23 0 666 0 KEEP - Ncor1 YES MNNG_3 chr11 62392051 62392051 C T exonic Trpv2 nonsynonymous SNV NM_011706:c.C142T:p.P48S exonic "GRC,Trpv2" nonsynonymous SNV uc007jji.1:c.C142T:p.P48S exonic ENSMUSG00000018507 nonsynonymous SNV ENSMUST00000102643:c.C142T:p.P48S 11qB2 NA NA chr11 62392051 TCCxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.19521 0.196312 0.994391 32 0 0 18.022912 0.5 0.02 -0.122761 7 7 197 189 60 60 0 0 CC 3.91058 13 0 368 0 KEEP + Trpv2 YES MNNG_3 chr11 62650263 62650263 G A exonic Trim16 nonsynonymous SNV NM_053169:c.G908A:p.R303H exonic "Fbxw10,Trim16" nonsynonymous SNV uc007jkd.1:c.G233A:p.R78H exonic ENSMUSG00000047821 nonsynonymous SNV ENSMUST00000055006:c.G908A:p.R303H 11qB2 NA NA chr11 62650263 TCCxCAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 65 0 0 23.048101 0.384615 0.02 -0.227856 16 10 397 258 60 60 0 0 GG 9.318737 31 0 802 0 KEEP + Trim16 YES MNNG_3 chr11 6299949 6299949 G T intronic Zmiz2 NA NA intronic Zmiz2 NA NA intronic ENSMUSG00000041164 NA NA 11qA1 NA NA chr11 6299949 GTGxGAC G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.994422 0.994422 1 169 0 0 87.995234 0.538462 0.02 0.921348 30 35 842 908 60 60 0 0 GG 24.658372 82 0 2273 0 KEEP + Zmiz2 NO MNNG_3 chr11 63734981 63734981 G A exonic Hs3st3b1 synonymous SNV NM_018805:c.C409T:p.L137L exonic Hs3st3b1 synonymous SNV uc007jkn.1:c.C409T:p.L137L exonic ENSMUSG00000070407 synonymous SNV ENSMUST00000094103:c.C409T:p.L137L 11qB3 NA NA chr11 63734981 GCAxCTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.918166 0.918171 0.999994 98 0 0 38.786885 0.386364 0.02 -0.384753 27 17 729 434 60 60 0 0 GG 13.234901 44 0 1231 0 KEEP - Hs3st3b1 YES MNNG_3 chr11 64854935 64854935 G A intronic Arhgap44 NA NA intronic Arhgap44 NA NA intronic ENSMUSG00000033389 NA NA 11qB3 NA NA chr11 64854935 GTGxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 84 0 0 42.891993 0.472222 0.02 -0.315671 19 17 538 456 60 60 0 0 GG 9.018012 30 0 827 0 KEEP - Arhgap44 YES MNNG_3 chr11 65803912 65803912 C T intronic Dnah9 NA NA intronic Dnahc9 NA NA intronic ENSMUSG00000056752 NA NA 11qB3 NA NA chr11 65803912 ACAxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 49 0 0 28.246302 0.647059 0.02 -0.149022 6 11 162 278 60 60 0 0 CC 8.419368 28 0 748 0 KEEP - Dnah9 YES MNNG_3 chr11 67062810 67062810 C T intronic Myh4 NA NA intronic Myh4 NA NA intronic ENSMUSG00000057003 NA NA 11qB3 NA NA chr11 67062810 TAAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053762 0.054137 0.993072 21 0 0 10.199063 0.5 0.02 -0.07014 4 4 108 107 60 60 0 0 CC 3.308778 11 0 308 0 KEEP + Myh4 YES MNNG_3 chr11 67096961 67096961 G A exonic Myh8 synonymous SNV NM_177369:c.G621A:p.K207K exonic "Myh8,mKIAA4211" synonymous SNV uc007jmq.1:c.G345A:p.K115K exonic ENSMUSG00000055775 synonymous SNV ENSMUST00000019625:c.G621A:p.K207K 11qB3 NA NA chr11 67096961 CAAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 137 0 0 84.225347 0.52459 0.02 1.062445 29 32 824 873 60 60 0 0 GG 19.252071 64 0 1829 0 KEEP + Myh8 YES MNNG_3 chr11 68805370 68805370 C T exonic Pfas nonsynonymous SNV NM_001159519:c.G2446A:p.V816M exonic Pfas nonsynonymous SNV uc007jot.2:c.G544A:p.V182M exonic ENSMUSG00000020899 nonsynonymous SNV ENSMUST00000021282:c.G2446A:p.V816M 11qB3 NA NA chr11 68805370 GCAxCGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 206 0 0 86.534214 0.420455 0.02 0.719719 51 37 1403 949 60 60 0 0 CC 26.158952 87 0 2363 0 KEEP - Pfas YES MNNG_3 chr11 68884418 68884418 C T UTR5 Tmem107 NA NA UTR5 Tmem107 NA NA UTR5 ENSMUSG00000020895 NA NA 11qB3 NA NA chr11 68884418 AAAxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 227 0 0 111.054463 0.447619 0.02 2.177034 58 47 1556 1200 60 60 0 0 CC 28.871022 96 0 2598 0 KEEP + Tmem107 YES MNNG_3 chr11 68914580 68914580 G A exonic Per1 nonsynonymous SNV NM_001159367:c.G349A:p.D117N exonic Per1 nonsynonymous SNV uc011xwu.1:c.G349A:p.D117N exonic ENSMUSG00000020893 nonsynonymous SNV ENSMUST00000102605:c.G349A:p.D117N 11qB3 NA NA chr11 68914580 CAGxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 83 0 0 40.289334 0.444444 0.02 -0.324439 20 16 563 434 60 60 0 0 GG 10.508571 35 0 976 0 KEEP + Per1 YES MNNG_3 chr11 69144283 69144283 G A exonic Kcnab3 nonsynonymous SNV NM_010599:c.G667A:p.A223T exonic Kcnab3 nonsynonymous SNV uc007jpu.1:c.G202A:p.A68T exonic ENSMUSG00000018470 nonsynonymous SNV ENSMUST00000018614:c.G667A:p.A223T 11qB3 NA NA chr11 69144283 CTGxCCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 130 0 0 56.186805 0.46 0.02 1.052962 27 23 733 602 70 70 0 0 GG 17.949097 60 0 1578 0 KEEP + Kcnab3 YES MNNG_3 chr11 69167580 69167580 G A exonic Chd3 nonsynonymous SNV NM_146019:c.C3635T:p.P1212L exonic Chd3 nonsynonymous SNV uc007jpy.1:c.C3635T:p.P1212L exonic ENSMUSG00000018474 nonsynonymous SNV ENSMUST00000092971:c.C3635T:p.P1212L 11qB3 NA NA chr11 69167580 TGGxGGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 74 0 0 57.087551 0.617647 0.02 -0.29813 13 21 365 569 60 60 0 0 GG 10.505605 35 0 950 0 KEEP - Chd3 YES MNNG_3 chr11 69177461 69177461 C T intronic Chd3 NA NA intronic Chd3 NA NA intronic ENSMUSG00000018474 NA NA 11qB3 NA NA chr11 69177461 TCCxTAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 260 3 0 65.632856 0.397059 0.02 0.764388 41 27 1153 726 60 60 0 0 CC 47.226789 157 0 4441 0 KEEP - Chd3 YES MNNG_3 chr11 69293172 69293172 G A intronic Dnah2 NA NA intronic Dnahc2 NA NA intronic ENSMUSG00000005237 NA NA 11qB3 NA NA chr11 69293172 GAAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.999859 44 0 0 13.06477 0.230769 0.02 -0.228 20 6 567 163 60 60 0 0 GG 5.414517 18 0 508 0 KEEP - Dnah2 YES MNNG_3 chr11 69694415 69694415 C T UTR5 Kctd11 NA NA UTR5 Kctd11 NA NA UTR5 ENSMUSG00000046731 NA NA 11qB3 NA NA chr11 69694415 GGGxTCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 95 0 0 60.517931 0.575 0.02 -0.35072 17 23 471 614 60 60 0 0 CC 14.738031 49 0 1370 0 KEEP - Kctd11 YES MNNG_3 chr11 70455225 70455225 C T UTR3 Gp1ba NA NA UTR3 Gp1ba NA NA UTR3 ENSMUSG00000050675 NA NA 11qB3 NA NA chr11 70455225 GCCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 92 0 0 40.058019 0.576923 0.02 -0.22798 11 15 307 406 60 60 0 0 CC 16.542548 55 0 1530 0 KEEP + Gp1ba YES MNNG_3 chr11 7110113 7110113 G A exonic Igfbp3 nonsynonymous SNV NM_008343:c.C542T:p.A181V exonic Igfbp3 nonsynonymous SNV uc007hzi.1:c.C542T:p.A181V exonic ENSMUSG00000020427 nonsynonymous SNV ENSMUST00000020702:c.C542T:p.A181V 11qA1 NA NA chr11 7110113 CTGxCGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 133 0 0 64.043641 0.543478 0.02 -0.403325 21 25 587 659 60 60 0 0 GG 19.247171 64 0 1768 0 KEEP - Igfbp3 YES MNNG_3 chr11 72004999 72004999 C T exonic 4933427D14Rik synonymous SNV NM_028963:c.G1002A:p.Q334Q exonic 4933427D14Rik synonymous SNV uc007jyd.1:c.G1002A:p.Q334Q exonic ENSMUSG00000020807 synonymous SNV ENSMUST00000108506:c.G1002A:p.Q334Q 11qB4 NA NA chr11 72004999 CAGxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 105 0 0 41.622777 0.428571 0.02 -0.368221 24 18 668 455 60 60 0 0 CC 13.834862 46 0 1277 0 KEEP - 4933427D14Rik YES MNNG_3 chr11 72562895 72562895 G A exonic Ankfy1 nonsynonymous SNV NM_009671:c.G1564A:p.E522K exonic Ankfy1 nonsynonymous SNV uc007jzh.1:c.G1564A:p.E522K exonic ENSMUSG00000020790 nonsynonymous SNV ENSMUST00000155998:c.G1564A:p.E522K 11qB4 NA NA chr11 72562895 ACAxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322764 0.322807 0.999869 46 0 0 26.797545 0.555556 0.02 -0.157837 8 10 223 274 60 60 0 0 GG 6.317398 21 0 601 0 KEEP + Ankfy1 YES MNNG_3 chr11 72567939 72567939 G A exonic Ankfy1 nonsynonymous SNV NM_009671:c.G2341A:p.G781R exonic Ankfy1 nonsynonymous SNV uc007jzh.1:c.G2341A:p.G781R exonic ENSMUSG00000020790 nonsynonymous SNV ENSMUST00000155998:c.G2341A:p.G781R 11qB4 NA NA chr11 72567939 TGGxGAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 47 0 0 33.84691 0.705882 0.02 -0.149064 5 12 140 326 60 60 0 0 GG 6.918489 23 0 647 0 KEEP + Ankfy1 YES MNNG_3 chr11 73208676 73208676 G A exonic Olfr1 nonsynonymous SNV NM_146921:c.C847T:p.P283S exonic Olfr1 nonsynonymous SNV uc007kap.2:c.C847T:p.P283S exonic ENSMUSG00000069823 nonsynonymous SNV ENSMUST00000120303:c.C847T:p.P283S 11qB4 NA NA chr11 73208676 TGGxAGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 150 0 0 40.920324 0.470588 0.02 -0.298125 18 16 500 435 60 60 0 0 GG 27.669142 92 0 2595 0 KEEP - Olfr1 YES MNNG_3 chr11 75313982 75313982 G A intronic Prpf8 NA NA intronic Prpf8 NA NA intronic ENSMUSG00000020850 NA NA 11qB5 NA NA chr11 75313982 TGAxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 44 0 0 30.996736 0.5 0.02 -0.219194 12 12 333 325 60 60 0 0 GG 5.11415 17 0 488 0 KEEP + Prpf8 YES MNNG_3 chr11 76800094 76800094 C T exonic Blmh nonsynonymous SNV NM_178645:c.C1333T:p.P445S exonic Blmh nonsynonymous SNV uc007kge.2:c.C1333T:p.P445S exonic ENSMUSG00000020840 nonsynonymous SNV ENSMUST00000021197:c.C1333T:p.P445S 11qB5 NA NA chr11 76800094 CTGxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 279 2 0 114.298753 0.465347 0.02 2.30944 54 47 1473 1222 60 60 0 0 CC 43.307829 144 0 3957 0 KEEP + Blmh YES MNNG_3 chr11 77359055 77359055 G A intronic Taok1 NA NA intronic Taok1 NA NA intronic ENSMUSG00000017291 NA NA 11qB5 NA NA chr11 77359055 AAAxGTA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.42039 0.423478 0.992708 33 0 0 29.233621 0.52381 0.02 -0.184149 10 11 281 303 60 60 0 0 GG 3.008085 10 0 282 0 KEEP - Taok1 YES MNNG_3 chr11 77992575 77992575 G A intronic Tlcd1 NA NA UTR5 Tlcd1 NA NA UTR5 ENSMUSG00000019437 NA NA 11qB5 NA NA chr11 77992575 CCGxGGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 223 0 0 92.93801 0.529412 0.02 1.001135 32 36 900 962 60 60 0 0 GG 35.79099 119 0 3300 0 KEEP + Tlcd1 YES MNNG_3 chr11 78082159 78082159 C T exonic 2610507B11Rik synonymous SNV NM_001002004:c.C1531T:p.L511L exonic 2610507B11Rik synonymous SNV uc007kir.2:c.C1531T:p.L511L exonic ENSMUSG00000010277 synonymous SNV ENSMUST00000010421:c.C1531T:p.L511L 11qB5 NA NA chr11 78082159 CCCxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 110 0 0 69.065436 0.52 0.02 -0.438407 24 26 661 717 60 60 0 0 CC 14.137274 47 0 1329 0 KEEP + 2610507B11Rik YES MNNG_3 chr11 78398760 78398760 G A intronic Nlk NA NA intronic Nlk NA NA ncRNA_exonic ENSMUSG00000082110 NA NA 11qB5 NA NA chr11 78398760 AAGxCAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 112 2 9 68.383569 0.577778 0.02 -0.394565 19 26 530 693 60 60 0 0 GG 15.895256 53 0 1416 0 KEEP - Nlk YES MNNG_3 chr11 79252385 79252385 C T intronic Nf1 NA NA intronic Nf1 NA NA intronic ENSMUSG00000020716 NA NA 11qB5 NA NA chr11 79252385 CATxATC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641339 0.641347 0.999988 60 1 0 14.103186 0.25 0.02 -0.245516 21 7 597 176 60 60 0 0 CC 8.122641 27 0 779 0 KEEP + Nf1 YES MNNG_3 chr11 80490389 80490389 C T exonic Myo1d nonsynonymous SNV NM_177390:c.G766A:p.V256I exonic Myo1d nonsynonymous SNV uc007kmh.1:c.G766A:p.V256I exonic ENSMUSG00000035441 nonsynonymous SNV ENSMUST00000041065:c.G766A:p.V256I 11qB5 NA NA chr11 80490389 TTAxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 207 1 0 113.388634 0.542169 0.02 0.869673 38 45 1041 1168 60 60 0 0 CC 29.774309 99 0 2740 0 KEEP - Myo1d YES MNNG_3 chr11 80965382 80965382 G A exonic Asic2 nonsynonymous SNV NM_007384:c.C586T:p.P196S exonic Accn1 nonsynonymous SNV uc007kml.1:c.C586T:p.P196S exonic ENSMUSG00000020704 nonsynonymous SNV ENSMUST00000021045:c.C586T:p.P196S 11qB5 NA NA chr11 80965382 GCGxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322803 0.322807 0.999988 47 0 0 13.964308 0.375 0.02 -0.157821 10 6 279 157 60 60 0 0 GG 8.09754 27 0 707 0 KEEP - Asic2 YES MNNG_3 chr11 83265058 83265058 G A exonic Mmp28 nonsynonymous SNV NM_080453:c.C209T:p.S70F exonic Mmp28 nonsynonymous SNV uc007kpa.1:c.C209T:p.S70F exonic ENSMUSG00000020682 nonsynonymous SNV ENSMUST00000021020:c.C209T:p.S70F 11qC NA NA chr11 83265058 TGGxATA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 157 0 0 62.338514 0.393939 0.02 1.01932 40 26 1130 692 60 60 0 0 GG 25.85404 86 0 2389 0 KEEP - Mmp28 YES MNNG_3 chr11 83590886 83590886 C T intronic Heatr6 NA NA intronic Heatr6 NA NA intronic ENSMUSG00000000976 NA NA 11qC NA NA chr11 83590886 TTCxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 27 0 0 10.871717 0.454545 0.02 -0.096204 6 5 168 118 60 60 0 0 CC 3.609887 12 0 342 0 KEEP + Heatr6 YES MNNG_3 chr11 84632101 84632101 C T splicing Mrm1(NM_145433:exon3:c.630+1G>A) NA NA splicing Mrm1(uc007kqr.1:exon3:c.630+1G>A) NA NA splicing ENSMUSG00000018405(ENSMUST00000018549:exon3:c.630+1G>A) NA NA 11qC NA NA chr11 84632101 TTAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.760881 0.760887 0.999992 89 0 0 32.40227 0.424242 0.02 -0.289262 19 14 516 355 60 60 0 0 CC 12.029181 40 0 1087 0 KEEP - Mrm1 YES MNNG_3 chr11 85372558 85372558 C T intronic Bcas3 NA NA intronic Bcas3 NA NA intronic ENSMUSG00000059439 NA NA 11qC NA NA chr11 85372558 CTTxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999997 74 1 0 38.173529 0.428571 0.02 -0.315684 20 15 562 414 60 60 0 0 CC 8.397824 31 1 883 8 KEEP + Bcas3 YES MNNG_3 chr11 86142783 86142783 G A exonic Med13 nonsynonymous SNV NM_001080931:c.C896T:p.S299F exonic Med13 nonsynonymous SNV uc007ksk.1:c.C896T:p.S299F exonic ENSMUSG00000034297 nonsynonymous SNV ENSMUST00000043624:c.C896T:p.S299F 11qC NA NA chr11 86142783 TGAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 82 0 0 30.899411 0.342105 0.02 -0.333224 25 13 710 353 60 60 0 0 GG 9.92305 33 0 936 0 KEEP - Med13 YES MNNG_3 chr11 86503401 86503401 G A exonic Ptrh2 nonsynonymous SNV NM_001098810:c.G341A:p.G114D exonic Ptrh2 nonsynonymous SNV uc007ksz.1:c.G341A:p.G114D exonic ENSMUSG00000072582 nonsynonymous SNV ENSMUST00000108022:c.G341A:p.G114D 11qC NA NA chr11 86503401 GTGxCCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423422 0.423478 0.999869 45 0 0 17.565573 0.4 0.02 -0.184073 12 8 329 196 60 60 0 0 GG 6.312591 21 0 565 0 KEEP + Ptrh2 YES MNNG_3 chr11 8736378 8736378 G A intergenic "Tns3(dist=171840),Hus1(dist=156767)" NA NA exonic AK140049 nonsynonymous SNV uc007hzm.1:c.C380T:p.T127I exonic ENSMUSG00000046634 unknown UNKNOWN 11qA1 NA NA chr11 8736378 CCGxTGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 68 0 0 38.153156 0.484848 0.02 -0.287921 17 16 446 404 60 60 0 0 GG 8.421299 28 0 767 0 KEEP NA Tns3 YES MNNG_3 chr11 87427289 87427289 C T exonic Mtmr4 nonsynonymous SNV NM_133215:c.C3322T:p.P1108S exonic Mtmr4 nonsynonymous SNV uc007kua.1:c.C3151T:p.P1051S exonic ENSMUSG00000018401 nonsynonymous SNV ENSMUST00000092802:c.C3151T:p.P1051S 11qC NA NA chr11 87427289 GTTxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 165 0 0 59.235486 0.428571 0.02 1.106312 32 24 907 644 60 60 0 0 CC 22.551463 75 0 2114 0 KEEP + Mtmr4 YES MNNG_3 chr11 87445200 87445200 C T intronic Hsf5 NA NA intronic Hsf5 NA NA intronic ENSMUSG00000070345 NA NA 11qC NA NA chr11 87445200 ATTxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 163 0 0 93.31072 0.545455 0.02 0.921305 30 36 840 959 60 60 0 0 CC 23.764194 79 0 2237 0 KEEP + Hsf5 YES MNNG_3 chr11 8749011 8749011 G A intergenic "Tns3(dist=184473),Hus1(dist=144134)" NA NA exonic AK140049 synonymous SNV uc007hzm.1:c.C105T:p.L35L exonic ENSMUSG00000046634 unknown UNKNOWN 11qA1 NA NA chr11 8749011 AGTxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 65 0 0 30.604191 0.48 0.02 -0.219217 13 12 368 324 60 60 0 0 GG 9.024912 30 0 860 0 KEEP NA Tns3 YES MNNG_3 chr11 87620453 87620453 C T exonic Lpo nonsynonymous SNV NM_080420:c.G2029A:p.V677I exonic Lpo nonsynonymous SNV uc007kus.2:c.G2029A:p.V677I exonic ENSMUSG00000009356 nonsynonymous SNV ENSMUST00000103177:c.G2029A:p.V677I 11qC NA NA chr11 87620453 GGAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 73 0 0 35.883379 0.608696 0.02 -0.201628 9 14 247 359 60 60 0 0 CC 10.481818 35 0 953 0 KEEP - Lpo YES MNNG_3 chr11 87683288 87683288 C T intronic Epx NA NA intronic Epx NA NA intronic ENSMUSG00000052234 NA NA 11qC NA NA chr11 87683288 CACxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 136 0 0 60.837764 0.428571 0.02 1.097532 32 24 891 660 60 60 0 0 CC 18.275496 61 0 1641 0 KEEP - Epx YES MNNG_3 chr11 9191671 9191671 C T exonic Abca13 nonsynonymous SNV NM_178259:c.C3530T:p.P1177L exonic Abca13 nonsynonymous SNV uc007iaa.1:c.C3530T:p.P1177L exonic ENSMUSG00000004668 nonsynonymous SNV ENSMUST00000042740:c.C3530T:p.P1177L 11qA1 NA NA chr11 9191671 CTCxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760787 0.760887 0.999869 61 0 0 51.289008 0.575758 0.02 -0.289371 14 19 395 520 60 60 0 0 CC 6.31694 21 0 593 0 KEEP + Abca13 YES MNNG_3 chr11 94804744 94804744 C T exonic Col1a1 nonsynonymous SNV NM_007742:c.C1570T:p.P524S exonic Col1a1 nonsynonymous SNV uc007kzn.1:c.C1570T:p.P524S exonic ENSMUSG00000001506 nonsynonymous SNV ENSMUST00000001547:c.C1570T:p.P524S 11qD NA NA chr11 94804744 CTCxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 124 2 0 39.638203 0.326923 0.02 1.123842 35 17 977 458 60 60 0 0 CC 16.537481 55 0 1521 0 KEEP + Col1a1 YES MNNG_3 chr11 9515700 9515700 C T exonic Abca13 synonymous SNV NM_178259:c.C14320T:p.L4774L exonic Abca13 synonymous SNV uc007iaa.1:c.C14320T:p.L4774L exonic ENSMUSG00000004668 synonymous SNV ENSMUST00000042740:c.C14320T:p.L4774L 11qA1 NA NA chr11 9515700 ATTxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 63 0 0 25.785798 0.37931 0.02 -0.254266 18 11 505 289 60 60 0 0 CC 8.115321 27 0 764 0 KEEP + Abca13 YES MNNG_3 chr11 96253567 96253567 C T intergenic "Hoxb1(dist=24000),Gm11529(dist=54646)" NA NA intergenic "Hoxb1(dist=24000),Gm11529(dist=54646)" NA NA ncRNA_exonic ENSMUSG00000075587 NA NA 11qD NA NA chr11 96253567 TATxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 198 5 4 59.28604 0.46 0.02 -0.438455 27 23 765 633 60 60 0 0 CC 36.375685 124 1 3563 8 KEEP NA Hoxb1 YES MNNG_3 chr11 96916916 96916916 C T exonic Osbpl7 nonsynonymous SNV NM_001081434:c.C524T:p.P175L exonic Osbpl7 nonsynonymous SNV uc007ldp.1:c.C218T:p.P73L exonic ENSMUSG00000038534 nonsynonymous SNV ENSMUST00000046878:c.C659T:p.P220L 11qD NA NA chr11 96916916 TCCxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 242 0 0 154.795126 0.552381 0.02 2.371873 47 58 1318 1585 60 60 0 0 CC 33.008397 110 0 2999 0 KEEP + Osbpl7 YES MNNG_3 chr11 97397794 97397794 C G exonic Srcin1 nonsynonymous SNV NM_018873:c.G670C:p.E224Q exonic Srcin1 nonsynonymous SNV uc007lee.1:c.G670C:p.E224Q exonic ENSMUSG00000038453 nonsynonymous SNV ENSMUST00000107590:c.G673C:p.E225Q 11qD NA NA chr11 97397794 TCTxCTC C G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 24 0 0 19.398104 0.583333 0.02 -0.105228 5 7 139 196 60 60 0 0 CC 3.30881 11 0 309 0 KEEP - Srcin1 NO MNNG_3 chr11 98111112 98111112 G A exonic Cdk12 synonymous SNV NM_001109626:c.G3864A:p.E1288E exonic Cdk12 synonymous SNV uc007lft.2:c.G3864A:p.E1288E exonic ENSMUSG00000003119 synonymous SNV ENSMUST00000107538:c.G3864A:p.E1288E 11qD "Score=0.941105;Name=No.14727,chr2:119333270" NA chr11 98111112 GGAxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 90 0 0 42.868469 0.5 0.02 -0.30688 17 17 475 450 60 60 0 0 GG 13.790949 46 0 1224 0 KEEP + Cdk12 YES MNNG_3 chr11 98313105 98313105 G A intronic Grb7 NA NA UTR5 Grb7 NA NA intronic ENSMUSG00000019312 NA NA 11qD NA NA chr11 98313105 CCGxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.999869 29 0 0 13.296279 0.625 0.02 -0.069993 3 5 70 132 60 60 0 0 GG 6.236738 21 0 532 0 KEEP + Grb7 YES MNNG_3 chr11 98551981 98551981 A C intronic Psmd3 NA NA exonic Psmd3 stoploss SNV uc007lgw.1:c.A879C:p.X293C intronic ENSMUSG00000017221 NA NA 11qD NA NA chr11 98551981 CTGxGAT A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 46 0 0 12.645155 0.291667 0.02 -0.219092 17 7 473 156 60 60 0 0 AA 6.316467 21 0 583 0 KEEP + Psmd3 NO MNNG_3 chr11 99345259 99345259 C T intronic Krt23 NA NA intronic Krt23 NA NA intronic ENSMUSG00000006777 NA NA 11qD NA NA chr11 99345259 TTTxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 167 0 0 90.35475 0.45 0.02 0.887134 44 36 1240 971 60 60 0 0 CC 21.657491 72 0 2057 0 KEEP - Krt23 YES MNNG_3 chr11 99401555 99401555 G A intronic Krt40 NA NA intronic Krt40 NA NA intronic ENSMUSG00000059169 NA NA 11qD NA NA chr11 99401555 TGGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 43 0 0 29.972601 0.481481 0.02 -0.236672 14 13 382 319 60 60 0 0 GG 5.111752 17 0 455 0 KEEP - Krt40 YES MNNG_3 chr11 99617600 99617600 T C intergenic "Krtap4-6(dist=90326),Gm11595(dist=15428)" NA NA intergenic "Krtap4-6(dist=90326),Gm11595(dist=15428)" NA NA upstream ENSMUSG00000078265 NA NA 11qD NA NA chr11 99617600 GTGxCAG T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 227 0 0 54.486623 0.44898 0.02 -0.428605 27 22 706 587 60 60 0 0 TT 41.126724 137 0 3687 0 KEEP NA Krtap4-6 NO MNNG_3 chr12 102137548 102137548 C T UTR5 Gpr68 NA NA UTR5 Gpr68 NA NA exonic ENSMUSG00000072880 nonsynonymous SNV ENSMUST00000101128:c.G67A:p.D23N 12qE NA NA chr12 102137548 GGTxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 124 0 0 124.675202 0.77193 0.02 1.09761 13 44 357 1170 60 60 0 0 CC 16.543078 55 0 1537 0 KEEP - Gpr68 YES MNNG_3 chr12 102176075 102176075 C T exonic Ccdc88c synonymous SNV NM_026681:c.G3573A:p.R1191R exonic Ccdc88c synonymous SNV uc007ote.1:c.G3573A:p.R1191R exonic ENSMUSG00000021182 synonymous SNV ENSMUST00000068411:c.G3573A:p.R1191R 12qE NA NA chr12 102176075 GTTxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387354 0.387407 0.999863 46 0 0 54.452347 0.9 0.02 -0.175358 2 18 57 487 60 60 0 0 CC 6.016473 20 0 571 0 KEEP - Ccdc88c YES MNNG_3 chr12 104420437 104420437 T G intronic Unc79 NA NA intronic Unc79 NA NA intronic ENSMUSG00000021198 NA NA 12qE NA NA chr12 104420437 GTCxGGA T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 210 0 0 140.755945 0.653846 0.02 1.109675 27 51 728 1383 60 60 0 0 TT 30.364599 101 0 2751 0 KEEP + Unc79 NO MNNG_3 chr12 105368765 105368765 G A exonic Serpina3b nonsynonymous SNV NM_173024:c.G94A:p.V32I exonic Serpina3b nonsynonymous SNV uc007owu.1:c.G94A:p.V32I exonic ENSMUSG00000066364 nonsynonymous SNV ENSMUST00000085052:c.G94A:p.V32I 12qE NA NA chr12 105368765 GCAxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 320 0 0 20.850144 0.116505 0.02 2.194233 91 12 2524 312 60 60 0 0 GG 54.119591 180 0 5025 0 KEEP + Serpina3b YES MNNG_3 chr12 105479288 105479288 G T exonic Serpina3g stopgain SNV NM_009251:c.G1075T:p.E359X exonic Serpina3g stopgain SNV uc007oxa.1:c.G499T:p.E167X exonic ENSMUSG00000041481 stopgain SNV ENSMUST00000171873:c.G262T:p.E88X 12qE NA NA chr12 105479288 ACAxAGG G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 184 2 0 11.266903 0.112903 0.02 0.851208 55 7 1534 174 60 60 0 0 GG 28.866775 96 0 2727 0 KEEP + Serpina3g NO MNNG_3 chr12 105651785 105651785 C T exonic Serpina3n nonsynonymous SNV NM_009252:c.C1226T:p.P409L exonic Serpina3n nonsynonymous SNV uc007oxg.1:c.C1226T:p.P409L exonic ENSMUSG00000021091 nonsynonymous SNV ENSMUST00000021506:c.C1226T:p.P409L 12qE NA NA chr12 105651785 CCCxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 121 2 0 109.319465 0.880952 0.02 -0.376609 5 37 138 984 60 60 0 0 CC 17.741049 59 0 1631 0 KEEP + Serpina3n YES MNNG_3 chr12 106398144 106398144 C T intronic Tcl1b1 NA NA intronic Tcl1b1 NA NA intronic ENSMUSG00000066359 NA NA 12qE "Score=0.965185;Name=No.31504,chrUn_random:394226" NA chr12 106398144 CCCxAAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 156 0 0 133.429592 0.884615 0.02 1.239378 6 46 169 1196 60 60 0 0 CC 23.766567 79 0 2287 0 KEEP + Tcl1b1 YES MNNG_3 chr12 110105866 110105866 C T intronic Wars NA NA intronic Wars NA NA intronic ENSMUSG00000021266 NA NA 12qF1 NA NA chr12 110105866 CTGxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 116 1 0 102.269396 0.897436 0.02 -0.341902 4 35 112 912 60 60 0 0 CC 18.33452 61 0 1662 0 KEEP - Wars YES MNNG_3 chr12 110113375 110113375 C T exonic Wars nonsynonymous SNV NM_001164314:c.G686A:p.C229Y exonic Wars nonsynonymous SNV uc007pag.2:c.G686A:p.C229Y exonic ENSMUSG00000021266 nonsynonymous SNV ENSMUST00000109848:c.G686A:p.C229Y 12qF1 NA NA chr12 110113375 CCAxAGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 323 0 0 287.23992 0.852459 0.02 1.931339 18 104 500 2599 60 60 0 0 CC 44.216387 147 0 4122 0 KEEP - Wars YES MNNG_3 chr12 110126677 110126677 C T exonic Wars nonsynonymous SNV NM_001164314:c.G20A:p.G7D exonic Wars nonsynonymous SNV uc007pag.2:c.G20A:p.G7D exonic ENSMUSG00000021266 nonsynonymous SNV ENSMUST00000109848:c.G20A:p.G7D 12qF1 NA NA chr12 110126677 TCGxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.023894 0.024074 0.99254 17 0 0 11.619613 0.8 0.02 -0.043841 1 4 28 108 60 60 0 0 CC 2.707203 9 0 253 0 KEEP - Wars YES MNNG_3 chr12 111856320 111856320 C T exonic Dync1h1 nonsynonymous SNV NM_030238:c.C1946T:p.A649V exonic Dync1h1 nonsynonymous SNV uc007pbo.1:c.C1946T:p.A649V exonic ENSMUSG00000018707 nonsynonymous SNV ENSMUST00000018851:c.C1946T:p.A649V 12qF1 NA NA chr12 111856320 GGGxTAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 67 0 0 62.059143 0.814815 0.02 -0.236689 5 22 138 572 60 60 0 0 CC 11.128882 37 0 1027 0 KEEP + Dync1h1 YES MNNG_3 chr12 111887273 111887273 C T exonic Dync1h1 synonymous SNV NM_030238:c.C8829T:p.T2943T exonic Dync1h1 synonymous SNV uc007pbo.1:c.C8829T:p.T2943T exonic ENSMUSG00000018707 synonymous SNV ENSMUST00000018851:c.C8829T:p.T2943T 12qF1 NA NA chr12 111887273 CACxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 177 2 0 8.523571 0.083333 0.02 1.062557 55 5 1537 136 60 60 0 0 CC 29.170118 97 0 2688 0 KEEP + Dync1h1 YES MNNG_3 chr12 112339928 112339928 C T intronic Rcor1 NA NA intronic Rcor1 NA NA intronic ENSMUSG00000037896 NA NA 12qF1 NA NA chr12 112339928 TCTxTAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 56 0 0 11.03083 0.263158 0.02 -0.166605 14 5 394 134 60 60 0 0 CC 9.024788 30 0 861 0 KEEP + Rcor1 YES MNNG_3 chr12 112476085 112476085 A T intronic Traf3 NA NA intronic Traf3 NA NA intronic ENSMUSG00000021277 NA NA 12qF1 NA NA chr12 112476085 TCCxGCG A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 110 0 0 99.766312 0.85 0.02 -0.350675 6 34 157 909 60 60 0 0 AA 17.730938 59 0 1625 0 KEEP + Traf3 NO MNNG_3 chr12 113872434 113872434 C T exonic Adssl1 nonsynonymous SNV NM_007421:c.C556T:p.L186F exonic Adssl1 nonsynonymous SNV uc007peu.2:c.C556T:p.L186F exonic ENSMUSG00000011148 nonsynonymous SNV ENSMUST00000021726:c.C556T:p.L186F 12qF1 NA NA chr12 113872434 CTTxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 175 0 0 127.927007 0.814815 0.02 1.123873 10 44 288 1182 60 60 0 0 CC 29.155468 97 0 2731 0 KEEP + Adssl1 YES MNNG_3 chr12 113896750 113896750 C T intronic Akt1 NA NA intronic Akt1 NA NA intronic ENSMUSG00000001729 NA NA 12qF1 NA NA chr12 113896750 CTCxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 515 2 1 379.009749 0.811321 0.02 3.567563 30 129 837 3510 60 60 0 0 CC 82.710484 275 0 7683 0 KEEP - Akt1 YES MNNG_3 chr12 114369885 114369885 C T exonic Mta1 synonymous SNV NM_054081:c.C1395T:p.A465A exonic Mta1 synonymous SNV uc007pfv.1:c.C1395T:p.A465A exonic ENSMUSG00000021144 synonymous SNV ENSMUST00000069690:c.C1395T:p.A465A 12qF1 NA NA chr12 114369885 TGCxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 90 0 0 121.494676 0.928571 0.02 -0.368286 3 39 83 1076 60 60 0 0 CC 11.129326 37 0 1033 0 KEEP + Mta1 YES MNNG_3 chr12 114545471 114545471 C T intergenic "Tmem121(dist=117738),Adam6b(dist=182305)" NA NA ncRNA_splicing abParts(uc011yvj.1:exon733:c.44455+1G>A) NA NA splicing ENSMUSG00000076613(ENSMUST00000103418:exon3:c.357+1G>A) NA NA 12qF1 NA NA chr12 114545471 TTAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 147 0 0 123.820986 0.814815 0.02 1.123952 10 44 276 1141 60 60 0 0 CC 19.248202 64 0 1750 0 KEEP NA Tmem121 YES MNNG_3 chr12 119159486 119159486 C T exonic Dnah11 nonsynonymous SNV NM_010060:c.G11303A:p.R3768K exonic "Dnahc11,Lrd" nonsynonymous SNV uc011yvs.1:c.G26A:p.R9K exonic ENSMUSG00000018581 nonsynonymous SNV ENSMUST00000084806:c.G11303A:p.R3768K 12qF2 NA NA chr12 119159486 TTCxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 41 0 0 59.028895 0.95 0.02 -0.175367 1 19 29 517 60 60 0 0 CC 5.414453 18 0 507 0 KEEP - Dnah11 YES MNNG_3 chr12 25183436 25183436 C T upstream Taf1b NA NA upstream Taf1b NA NA upstream ENSMUSG00000059669 NA NA 12qA1.3 "Score=0.970886;Name=No.23797,chr12:21538808" NA chr12 25183436 TCTxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036511 0.036766 0.993072 22 0 2 6.352508 1 0.02 -0.052614 0 2 0 54 0 29 0 0 CC 3.909982 13 0 364 0 KEEP + Taf1b YES MNNG_3 chr12 25229289 25229289 C T intronic Taf1b NA NA intronic Taf1b NA NA intronic ENSMUSG00000059669 NA NA 12qA1.3 NA NA chr12 25229289 GAGxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 126 0 0 95.395493 0.914286 0.02 -0.333159 3 32 88 846 60 60 0 0 CC 21.959971 73 0 2084 0 KEEP + Taf1b YES MNNG_3 chr12 29244788 29244788 C T exonic Allc nonsynonymous SNV NM_053156:c.G674A:p.G225D exonic Allc nonsynonymous SNV uc007nfp.2:c.G674A:p.G225D exonic ENSMUSG00000020636 nonsynonymous SNV ENSMUST00000020965:c.G674A:p.G225D 12qA2 NA NA chr12 29244788 ACAxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 66 0 0 32.745051 0.916667 0.02 -0.105205 1 11 28 290 60 60 0 0 CC 12.030698 40 0 1104 0 KEEP - Allc YES MNNG_3 chr12 32134092 32134092 C T exonic Slc26a3 nonsynonymous SNV NM_021353:c.C532T:p.L178F exonic Slc26a3 nonsynonymous SNV uc007nhk.1:c.C130T:p.L44F exonic ENSMUSG00000001225 nonsynonymous SNV ENSMUST00000001254:c.C532T:p.L178F 12qA3 NA NA chr12 32134092 GTTxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229143 0.229173 0.999869 43 2 0 38.736159 0.866667 0.02 -0.131524 2 13 58 351 60 60 0 0 CC 6.317528 21 0 604 0 KEEP + Slc26a3 YES MNNG_3 chr12 36840525 36840525 C T intronic Bzw2 NA NA intronic Bzw2 NA NA intronic ENSMUSG00000020547 NA NA 12qA3 NA NA chr12 36840525 AGTxACC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.45615 0.457757 0.99649 39 0 0 52.847245 0.818182 0.02 -0.192903 4 18 114 488 60 60 0 0 CC 4.512006 15 0 422 0 KEEP - Bzw2 YES MNNG_3 chr12 37040916 37040916 C T exonic Sostdc1 synonymous SNV NM_025312:c.C36T:p.P12P exonic Sostdc1 synonymous SNV uc007njx.2:c.C36T:p.P12P exonic ENSMUSG00000036169 synonymous SNV ENSMUST00000041407:c.C36T:p.P12P 12qA3 NA NA chr12 37040916 TCCxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 181 2 0 151.018886 0.822581 0.02 1.151584 11 51 308 1393 60 60 0 0 CC 24.059256 80 0 2235 0 KEEP + Sostdc1 YES MNNG_3 chr12 40763176 40763176 C T exonic Arl4a nonsynonymous SNV NM_001039515:c.G158A:p.G53E exonic Arl4a nonsynonymous SNV uc007nks.1:c.G158A:p.G53E exonic ENSMUSG00000047446 nonsynonymous SNV ENSMUST00000101472:c.G158A:p.G53E 12qB1 NA NA chr12 40763176 AATxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 103 0 0 120.912276 0.95122 0.02 -0.377034 2 39 57 1058 60 60 1 0 CC 14.73939 49 0 1387 0 KEEP - Arl4a YES MNNG_3 chr12 4972662 4972662 C T exonic Atad2b unknown UNKNOWN exonic Atad2b synonymous SNV uc007myu.1:c.C1581T:p.T527T exonic ENSMUSG00000052812 synonymous SNV ENSMUST00000045664:c.C1581T:p.T527T 12qA1.1 NA NA chr12 4972662 AACxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 79 4 0 75.863811 0.862069 0.02 -0.254293 4 25 110 690 60 60 0 0 CC 11.413908 38 0 1038 0 KEEP + Atad2b YES MNNG_3 chr12 52901778 52901778 C T exonic Hectd1 nonsynonymous SNV NM_144788:c.G1256A:p.G419D exonic Hectd1 nonsynonymous SNV uc007nmz.2:c.G1256A:p.G419D exonic ENSMUSG00000035247 nonsynonymous SNV ENSMUST00000042052:c.G1256A:p.G419D 12qC1 NA NA chr12 52901778 GCAxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 167 1 0 14.038014 0.131148 0.02 1.062601 53 8 1449 205 60 60 0 0 CC 24.346801 81 0 2214 0 KEEP - Hectd1 YES MNNG_3 chr12 52903490 52903490 C T intronic Hectd1 NA NA intronic Hectd1 NA NA intronic ENSMUSG00000035247 NA NA 12qC1 NA NA chr12 52903490 GGTxAAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 125 0 0 92.321021 0.825 0.02 -0.3591 7 33 194 847 60 60 0 0 CC 21.05827 70 0 2010 0 KEEP - Hectd1 YES MNNG_3 chr12 55284815 55284815 G A intronic Egln3 NA NA intronic Egln3 NA NA intronic ENSMUSG00000035105 NA NA 12qC1 NA NA chr12 55284815 GGGxATC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 49 0 0 53.250574 0.9 0.02 -0.175341 2 18 56 475 60 60 0 0 GG 6.912874 23 0 635 0 KEEP - Egln3 YES MNNG_3 chr12 56839248 56839248 C T exonic Ralgapa1 nonsynonymous SNV NM_001003719:c.G2213A:p.G738D exonic Ralgapa1 nonsynonymous SNV uc007nou.1:c.G2213A:p.G738D exonic ENSMUSG00000021027 nonsynonymous SNV ENSMUST00000085385:c.G2213A:p.G738D 12qC1 NA NA chr12 56839248 GAGxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 106 2 0 86.74853 0.833333 0.02 -0.324397 6 30 168 795 60 60 0 0 CC 14.738005 49 0 1363 0 KEEP - Ralgapa1 YES MNNG_3 chr12 60307078 60307078 C T exonic Fbxo33 synonymous SNV NM_001033156:c.G621A:p.R207R exonic Fbxo33 synonymous SNV uc007nqk.2:c.G621A:p.R207R exonic ENSMUSG00000035329 synonymous SNV ENSMUST00000043204:c.G621A:p.R207R 12qC1 NA NA chr12 60307078 ATTxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 84 0 0 82.063592 0.823529 0.02 -0.298113 6 28 165 756 60 60 0 0 CC 13.2349 44 0 1230 0 KEEP - Fbxo33 YES MNNG_3 chr12 62941481 62941481 C A exonic Lrfn5 nonsynonymous SNV NM_178714:c.C1067A:p.T356N exonic Lrfn5 nonsynonymous SNV uc007nqm.1:c.C1067A:p.T356N exonic ENSMUSG00000035653 nonsynonymous SNV ENSMUST00000055815:c.C1067A:p.T356N 12qC1 NA NA chr12 62941481 TTAxCTG C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 98 0 0 8.782469 0.116279 0.02 -0.37703 38 5 1039 131 60 60 0 0 CC 13.5059 45 0 1205 0 KEEP + Lrfn5 NO MNNG_3 chr12 72227362 72227362 C T UTR5 Timm9 NA NA UTR5 Timm9 NA NA UTR5 ENSMUSG00000021079 NA NA 12qC3 NA NA chr12 72227362 ATTxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 183 1 0 214.883906 0.8875 0.02 0.99395 9 71 238 1932 60 60 0 0 CC 22.261543 74 0 2128 0 KEEP - Timm9 YES MNNG_3 chr12 77505554 77505554 C T exonic Hspa2 synonymous SNV NM_008301:c.C34T:p.L12L exonic Hspa2 synonymous SNV uc011yoa.1:c.C34T:p.L12L exonic ENSMUSG00000059970 synonymous SNV ENSMUST00000080449:c.C34T:p.L12L 12qC3 NA NA chr12 77505554 GACxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 110 0 0 136.4238 0.93617 0.02 -0.412114 3 44 83 1203 60 60 0 0 CC 13.818586 46 0 1259 0 KEEP + Hspa2 YES MNNG_3 chr12 79921851 79921851 C T exonic Mpp5 synonymous SNV NM_019579:c.C1020T:p.P340P exonic Mpp5 synonymous SNV uc007nzg.2:c.C198T:p.P66P exonic ENSMUSG00000021112 synonymous SNV ENSMUST00000082024:c.C1020T:p.P340P 12qC3 NA NA chr12 79921851 GCCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 122 5 0 82.985087 0.763158 0.02 -0.33318 9 29 251 782 60 60 0 0 CC 19.394157 69 1 1922 12 KEEP + Mpp5 YES MNNG_3 chr12 7997710 7997710 C T exonic Apob synonymous SNV NM_009693:c.C2028T:p.T676T exonic Apob synonymous SNV uc007mzf.2:c.C2028T:p.T676T exonic ENSMUSG00000020609 synonymous SNV ENSMUST00000037520:c.C1989T:p.T663T 12qA1.1 NA NA chr12 7997710 AACxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 83 0 0 78.523068 0.896552 0.02 -0.254218 3 26 73 703 60 60 0 0 CC 13.173657 44 0 1221 0 KEEP + Apob YES MNNG_3 chr12 80184672 80184672 G A exonic Pigh synonymous SNV NM_029988:c.C405T:p.Y135Y exonic Pigh synonymous SNV uc007nzs.1:c.C405T:p.Y135Y exonic ENSMUSG00000021120 synonymous SNV ENSMUST00000072154:c.C405T:p.Y135Y 12qC3 NA NA chr12 80184672 GTAxTAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 72 0 0 8.885801 0.178571 0.02 -0.245478 23 5 625 122 60 60 0 0 GG 10.22666 34 0 949 0 KEEP - Pigh YES MNNG_3 chr12 81272845 81272845 C T exonic Actn1 stopgain SNV NM_134156:c.G2151A:p.W717X exonic Actn1 stopgain SNV uc007oap.2:c.G2151A:p.W717X exonic ENSMUSG00000015143 stopgain SNV ENSMUST00000021554:c.G2151A:p.W717X 12qC3 NA NA chr12 81272845 CTCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.386567 0.387407 0.997832 39 0 0 48.17503 0.85 0.02 -0.174937 3 17 83 438 60 60 0 0 CC 4.812886 16 0 450 0 KEEP - Actn1 YES MNNG_3 chr12 83442801 83442801 C T exonic Sipa1l1 synonymous SNV NM_172579:c.C813T:p.N271N exonic Sipa1l1 synonymous SNV uc007ocz.1:c.C813T:p.N271N exonic ENSMUSG00000042700 synonymous SNV ENSMUST00000053969:c.C813T:p.N271N 12qD1 NA NA chr12 83442801 GAAxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 90 0 0 102.06963 0.897436 0.02 -0.350655 4 35 110 910 60 60 0 0 CC 12.324276 41 0 1115 0 KEEP + Sipa1l1 YES MNNG_3 chr12 84899600 84899600 T C exonic Zfyve1 nonsynonymous SNV NM_183154:c.A1274G:p.E425G exonic Zfyve1 nonsynonymous SNV uc007odg.1:c.A1274G:p.E425G exonic ENSMUSG00000042628 nonsynonymous SNV ENSMUST00000048319:c.A1274G:p.E425G 12qD1 NA NA chr12 84899600 TACxCGT T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 97 0 0 78.558166 0.75 0.02 -0.314805 9 27 225 744 60 60 0 0 TT 12.914781 43 0 1165 0 KEEP - Zfyve1 NO MNNG_3 chr12 86106308 86106308 C T exonic Npc2 nonsynonymous SNV NM_023409:c.G109A:p.V37M exonic Npc2 nonsynonymous SNV uc007oft.1:c.G109A:p.V37M exonic ENSMUSG00000021242 nonsynonymous SNV ENSMUST00000021668:c.G109A:p.V37M 12qD1 NA NA chr12 86106308 TCAxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 88 0 0 110.096819 0.973684 0.02 -0.332915 1 37 24 945 60 60 0 0 CC 10.525944 35 0 955 0 KEEP - Npc2 YES MNNG_3 chr12 86194809 86194809 C T exonic Ltbp2 nonsynonymous SNV NM_013589:c.G688A:p.A230T exonic Ltbp2 nonsynonymous SNV uc007ofx.1:c.G688A:p.A230T exonic ENSMUSG00000002020 nonsynonymous SNV ENSMUST00000002073:c.G628A:p.A210T 12qD2 NA NA chr12 86194809 GCGxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 100 1 0 85.976124 0.756098 0.02 -0.368205 10 31 276 811 60 60 0 0 CC 13.836064 46 0 1277 0 KEEP - Ltbp2 YES MNNG_3 chr12 88303116 88303116 C T exonic 2310044G17Rik synonymous SNV NM_173735:c.C735T:p.S245S exonic "2310044G17Rik,Kiaa1737" synonymous SNV uc007oid.2:c.C777T:p.S259S exonic ENSMUSG00000034157 synonymous SNV ENSMUST00000038369:c.C798T:p.S266S 12qD2 NA NA chr12 88303116 CTCxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.717145 0.717315 0.999763 71 0 0 77.843631 0.83871 0.02 -0.27183 5 26 141 714 60 60 0 0 CC 10.225411 34 0 936 0 KEEP + 2310044G17Rik YES MNNG_3 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 402 9 103 47.45589 0.185714 0.02 1.967668 114 26 2917 642 60 60 0 0 TT 52.605102 175 0 4658 0 KEEP NA Gm2042 NO MNNG_3 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 358 8 44 65.44259 0.210145 0.02 2.128373 109 29 2847 824 60 60 0 0 TT 54.737132 182 0 4974 0 KEEP NA Gm2042 NO MNNG_3 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 117 2 6 28.470866 0.26 0.02 1.150714 37 13 1001 347 60 60 0 0 CC 13.23384 44 0 1211 0 KEEP NA Gm2042 NO MNNG_3 chr12 89697644 89697644 C T exonic Adck1 nonsynonymous SNV NM_001277296:c.C1397T:p.A466V exonic Adck1 nonsynonymous SNV uc007oju.1:c.C1397T:p.A466V exonic ENSMUSG00000021044 nonsynonymous SNV ENSMUST00000101165:c.C1397T:p.A466V 12qD3 NA NA chr12 89697644 TGGxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 92 0 0 118.707288 0.95122 0.02 -0.368228 2 39 57 1036 60 60 0 0 CC 11.731594 39 0 1111 0 KEEP + Adck1 YES MNNG_3 chr12 8996867 8996867 G A exonic Wdr35 nonsynonymous SNV NM_001159527:c.G1165A:p.A389T exonic Wdr35 nonsynonymous SNV uc011ykb.1:c.G595A:p.A199T exonic ENSMUSG00000066643 nonsynonymous SNV ENSMUST00000085745:c.G1165A:p.A389T 12qA1.1 NA NA chr12 8996867 TTGxCTA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.55282 0.552887 0.999879 49 0 0 12.28161 0.24 0.02 -0.219186 19 6 515 154 60 60 0 0 GG 6.616571 22 0 600 0 KEEP + Wdr35 YES MNNG_3 chr12 90771454 90771454 C T exonic Nrxn3 nonsynonymous SNV NM_001198587:c.C3262T:p.P1088S exonic Nrxn3 nonsynonymous SNV uc007okb.1:c.C2518T:p.P840S exonic ENSMUSG00000066392 nonsynonymous SNV ENSMUST00000167887:c.C2170T:p.P724S 12qD3 NA NA chr12 90771454 GACxGTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 84 0 0 82.915609 0.875 0.02 -0.280533 4 28 99 748 60 60 0 0 CC 13.214646 44 0 1066 0 KEEP + Nrxn3 YES MNNG_3 chr12 99937008 99937008 C T intronic Ptpn21 NA NA intronic Ptpn21 NA NA intronic ENSMUSG00000021009 NA NA 12qE NA NA chr12 99937008 TTTxTAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 218 0 0 172.775654 0.918033 0.02 1.062465 5 56 142 1536 60 60 0 0 CC 33.088897 110 0 3165 0 KEEP - Ptpn21 YES MNNG_3 chr13 100936435 100936435 G A exonic Naip2 nonsynonymous SNV NM_001126182:c.C1093T:p.P365S exonic Naip2 nonsynonymous SNV uc011zdq.1:c.C1093T:p.P365S exonic ENSMUSG00000078945 nonsynonymous SNV ENSMUST00000067975:c.C1093T:p.P365S 13qD1 "Score=0.900692;Name=No.34880,chr13:101195264" NA chr13 100936435 CTGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 186 0 0 80.135382 0.450704 0.02 0.974784 39 32 1093 861 60 60 0 0 GG 24.959543 83 0 2333 0 KEEP - Naip2 YES MNNG_3 chr13 105451403 105451403 G A exonic Cwc27 nonsynonymous SNV NM_026072:c.C1127T:p.T376I exonic Cwc27 nonsynonymous SNV uc007rtj.1:c.C1127T:p.T376I exonic ENSMUSG00000021715 nonsynonymous SNV ENSMUST00000022228:c.C1127T:p.T376I 13qD1 NA NA chr13 105451403 GAAxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 218 4 0 84.035715 0.454545 0.02 0.896002 42 35 1179 904 60 60 0 0 GG 30.681456 102 0 2873 0 KEEP - Cwc27 YES MNNG_3 chr13 112504556 112504556 T C exonic Mier3 synonymous SNV NM_172593:c.T1035C:p.Y345Y exonic Mier3 synonymous SNV uc007rvy.1:c.T1035C:p.Y345Y exonic ENSMUSG00000032727 synonymous SNV ENSMUST00000047412:c.T951C:p.Y317Y 13qD2.2 NA NA chr13 112504556 CTAxAAC T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 133 2 0 72.278354 0.466667 0.02 1.169826 32 28 767 769 60 60 0 0 TT 17.426059 58 0 1533 0 KEEP + Mier3 NO MNNG_3 chr13 117700169 117700169 T C intronic Parp8 NA NA intronic Parp8 NA NA intronic ENSMUSG00000021725 NA NA 13qD2.3 NA NA chr13 117700169 TCAxATT T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 50 0 0 18.138443 0.466667 0.02 -0.131502 8 7 203 193 60 60 0 0 TT 8.7185 29 0 769 0 KEEP - Parp8 NO MNNG_3 chr13 11882495 11882495 G A intronic Ryr2 NA NA intronic Ryr2 NA NA intronic ENSMUSG00000021313 NA NA 13qA1 NA NA chr13 11882495 ACAxAAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 205 1 0 102.965265 0.527027 0.02 1.046334 35 39 994 1066 60 60 0 0 GG 32.489741 108 0 3099 0 KEEP - Ryr2 YES MNNG_3 chr13 13281713 13281713 G A exonic Prl2c5 nonsynonymous SNV NM_181852:c.G286A:p.E96K exonic "Prl2c2,Prl2c5" nonsynonymous SNV uc007ply.1:c.G286A:p.E96K exonic ENSMUSG00000055360 nonsynonymous SNV ENSMUST00000021778:c.G286A:p.E96K 13qA1 "Score=0.96469;Name=No.32625,chr13:13410429" NA chr13 13281713 CCAxAAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 228 2 0 77.731765 0.418919 0.02 0.948425 43 31 1232 848 60 60 0 0 GG 32.790062 109 0 3124 0 KEEP + Prl2c5 YES MNNG_3 chr13 33125360 33125360 T G intronic Serpinb9b NA NA intronic Serpinb9b NA NA intronic ENSMUSG00000021403 NA NA 13qA3.3 NA NA chr13 33125360 TTTxTTA T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 82 0 0 42.676559 0.395349 0.02 -0.377055 26 17 720 471 60 60 0 0 TT 9.023397 30 0 834 0 KEEP + Serpinb9b NO MNNG_3 chr13 33496026 33496026 T A intergenic "Serpinb9f(dist=68791),Serpinb9g(dist=80633)" NA NA intergenic "Serpinb9f(dist=68791),Serpinb9g(dist=80633)" NA NA intronic ENSMUSG00000071452 NA NA 13qA3.3 "Score=0.972254;Name=No.32712,chr13:33578001" NA chr13 33496026 TTTxAGG T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 111 1 1 21.032111 0.255814 0.02 -0.411762 32 11 844 264 60 60 0 2 TT 11.323502 47 1 1242 26 KEEP NA Serpinb9f NO MNNG_3 chr13 43260774 43260774 G A exonic Tbc1d7 synonymous SNV NM_001252639:c.C255T:p.Y85Y exonic Tbc1d7 synonymous SNV uc007qfu.1:c.C255T:p.Y85Y exonic ENSMUSG00000021368 synonymous SNV ENSMUST00000021797:c.C255T:p.Y85Y 13qA4 NA NA chr13 43260774 ATGxTAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 136 0 0 66.441702 0.466667 0.02 1.071354 32 28 873 711 60 60 0 0 GG 17.745506 59 0 1626 0 KEEP - Tbc1d7 YES MNNG_3 chr13 48586095 48586095 G A exonic Zfp169 synonymous SNV NM_001164575:c.C924T:p.H308H exonic Zfp169 synonymous SNV uc007qig.2:c.C924T:p.H308H exonic ENSMUSG00000050954 synonymous SNV ENSMUST00000050188:c.C885T:p.H295H 13qA5 NA NA chr13 48586095 AGAxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38738 0.387407 0.999931 49 1 0 27.564509 0.55 0.02 -0.175339 9 11 248 283 60 60 0 0 GG 7.503618 25 0 672 0 KEEP - Zfp169 YES MNNG_3 chr13 49359160 49359160 G A exonic Fgd3 nonsynonymous SNV NM_015759:c.C2195T:p.T732I exonic Fgd3 nonsynonymous SNV uc007qjc.1:c.C2195T:p.T732I exonic ENSMUSG00000037946 nonsynonymous SNV ENSMUST00000048716:c.C2195T:p.T732I 13qA5 NA NA chr13 49359160 GGAxTGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 104 0 0 42.924643 0.428571 0.02 -0.377022 24 18 675 468 60 60 0 0 GG 12.933337 43 0 1191 0 KEEP - Fgd3 YES MNNG_3 chr13 55348884 55348884 G A exonic Nsd1 nonsynonymous SNV NM_008739:c.G3245A:p.G1082D exonic Nsd1 nonsynonymous SNV uc007qqj.1:c.G2936A:p.G979D exonic ENSMUSG00000021488 nonsynonymous SNV ENSMUST00000021944:c.G2936A:p.G979D 13qB1 NA NA chr13 55348884 GGGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 101 0 0 62.987367 0.555556 0.02 -0.39452 20 25 551 645 60 60 0 0 GG 13.834474 46 0 1252 0 KEEP + Nsd1 YES MNNG_3 chr13 55502577 55502577 G A exonic Slc34a1 nonsynonymous SNV NM_011392:c.G478A:p.V160M exonic Slc34a1 nonsynonymous SNV uc007qqs.1:c.G478A:p.V160M exonic ENSMUSG00000021490 nonsynonymous SNV ENSMUST00000057167:c.G478A:p.V160M 13qB1 NA NA chr13 55502577 CTGxTGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.992926 0.992926 1 141 0 0 88.283784 0.555556 0.02 0.938922 28 35 761 904 60 60 0 0 GG 17.729106 59 0 1608 0 KEEP + Slc34a1 YES MNNG_3 chr13 55654632 55654632 G A exonic Fam193b nonsynonymous SNV NM_145382:c.C425T:p.P142L exonic Fam193b nonsynonymous SNV uc011yzv.1:c.C425T:p.P142L exonic ENSMUSG00000021495 nonsynonymous SNV ENSMUST00000164224:c.C767T:p.P256L 13qB1 NA NA chr13 55654632 TGGxGGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 91 0 0 56.249247 0.511628 0.02 -0.376998 21 22 580 587 60 60 0 1 GG 10.580126 36 0 911 0 KEEP - Fam193b YES MNNG_3 chr13 58494716 58494716 G A exonic Hnrnpk nonsynonymous SNV NM_025279:c.C1202T:p.S401F exonic Hnrnpk nonsynonymous SNV uc007qtw.1:c.C995T:p.S332F exonic ENSMUSG00000021546 nonsynonymous SNV ENSMUST00000109849:c.C1130T:p.S377F 13qB1 NA NA chr13 58494716 ATAxATC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 208 0 0 77.242375 0.441176 0.02 1.098926 38 30 1069 832 60 60 0 0 GG 31.286385 104 0 2985 0 KEEP - Hnrnpk YES MNNG_3 chr13 59820297 59820297 G A exonic Spata31d1b synonymous SNV NM_001167593:c.G3897A:p.Q1299Q exonic Gm4934 synonymous SNV uc007qva.1:c.G3897A:p.Q1299Q exonic ENSMUSG00000091311 synonymous SNV ENSMUST00000165133:c.G3897A:p.Q1299Q 13qB2 "Score=0.979786;Name=No.32910,chr13:59801597" NA chr13 59820297 GCAxGCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053834 0.054137 0.994391 52 0 22 7.454384 0.428571 0.02 -0.070155 4 3 116 81 29 36 0 0 GG 6.317256 21 0 598 0 KEEP + Spata31d1b YES MNNG_3 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 177 0 5 16.281983 1 0.02 -0.113999 0 5 0 139 0 29 0 0 CC 38.806443 129 0 3718 0 KEEP + BC052688 NO MNNG_3 chr13 62489262 62489262 C G intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "Gm3604(dist=4728),Zfp935(dist=65114)" NA NA intergenic "ENSMUSG00000089002(dist=2850),ENSMUSG00000055228(dist=66421)" NA NA 13qB3 "Score=0.952824;Name=No.33007,chr13:61865461" NA chr13 62489262 TGTxCAA C G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 242 0 0 11.766448 0.095238 0.02 1.322183 57 6 1599 175 60 29 0 0 CC 41.211337 137 0 3888 0 KEEP NA Gm3604 NO MNNG_3 chr13 63633862 63633862 A C exonic Ptch1 nonsynonymous SNV NM_008957:c.T2501G:p.F834C exonic Ptch1 nonsynonymous SNV uc007qxv.1:c.T2501G:p.F834C exonic ENSMUSG00000021466 nonsynonymous SNV ENSMUST00000021921:c.T2501G:p.F834C 13qB3 NA NA chr13 63633862 CTAxAGT A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 70 0 0 29.955343 0.4 0.02 -0.263055 18 12 493 330 60 60 0 0 AA 8.702398 29 0 783 0 KEEP - Ptch1 NO MNNG_3 chr13 65442544 65442544 C A intergenic "Zfp369(dist=43441),Gm10324(dist=771845)" NA NA intergenic "Zfp369(dist=43441),AK145544(dist=57746)" NA NA intergenic "ENSMUSG00000021514(dist=37015),ENSMUSG00000090514(dist=38157)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442544 AACxTTT C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 105 5 31 6.37824 0.3 0.02 -0.157838 7 3 197 76 29 20 0 0 CC 20.154559 67 0 1920 0 KEEP NA Zfp369 NO MNNG_3 chr13 84434208 84434208 G A exonic Tmem161b nonsynonymous SNV NM_175187:c.G1187A:p.G396D exonic Tmem161b nonsynonymous SNV uc007rir.2:c.G641A:p.G214D exonic ENSMUSG00000035762 nonsynonymous SNV ENSMUST00000057495:c.G1187A:p.G396D 13qC3 NA NA chr13 84434208 TAGxTAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423426 0.423478 0.999879 48 0 0 25.146415 0.5 0.02 -0.175356 10 10 277 264 60 70 0 0 GG 6.616963 22 0 612 0 KEEP + Tmem161b YES MNNG_3 chr13 97405665 97405665 G A intronic Col4a3bp NA NA intronic Col4a3bp NA NA intronic ENSMUSG00000021669 NA NA 13qD1 NA NA chr13 97405665 GGAxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 67 0 0 15.863368 0.269231 0.02 -0.228007 19 7 547 191 60 60 0 0 GG 10.220892 34 0 960 0 KEEP + Col4a3bp YES MNNG_3 chr14 115951496 115951496 G A exonic Gpc5 nonsynonymous SNV NM_175500:c.G1340A:p.R447K exonic Gpc5 nonsynonymous SNV uc007uyi.2:c.G1340A:p.R447K exonic ENSMUSG00000022112 nonsynonymous SNV ENSMUST00000022707:c.G1340A:p.R447K 14qE4 NA NA chr14 115951496 TCAxAGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 112 0 0 39.939574 0.4 0.02 -0.359541 24 16 685 440 60 60 0 0 GG 14.473518 55 1 1582 19 KEEP + Gpc5 YES MNNG_3 chr14 121949467 121949467 T A exonic Dock9 nonsynonymous SNV NM_001128308:c.A5829T:p.E1943D exonic Dock9 nonsynonymous SNV uc007vai.1:c.A1806T:p.E602D exonic ENSMUSG00000025558 nonsynonymous SNV ENSMUST00000168017:c.A1803T:p.E601D 14qE5 NA NA chr14 121949467 CACxTCA T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 63 2 0 20.629725 0.333333 0.02 -0.236737 18 9 494 238 60 60 0 0 TT 8.686316 29 0 777 0 KEEP - Dock9 NO MNNG_3 chr14 15599327 15599327 G A exonic Slc4a7 nonsynonymous SNV NM_001033270:c.G1765A:p.V589I exonic Slc4a7 nonsynonymous SNV uc007sgn.1:c.G1765A:p.V589I exonic ENSMUSG00000021733 nonsynonymous SNV ENSMUST00000057015:c.G1765A:p.V589I 14qA2 NA NA chr14 15599327 TTGxTCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 87 0 0 46.45722 0.5625 0.02 -0.280529 14 18 374 474 60 60 0 0 GG 12.002004 40 0 1074 0 KEEP + Slc4a7 YES MNNG_3 chr14 17266727 17266727 G A exonic Rarb nonsynonymous SNV NM_011243:c.C1102T:p.P368S exonic Rarb nonsynonymous SNV uc007she.1:c.C1102T:p.P368S exonic ENSMUSG00000017491 nonsynonymous SNV ENSMUST00000063750:c.C1102T:p.P368S 14qA2 NA NA chr14 17266727 TTGxAAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 81 1 0 54.469315 0.5 0.02 -0.368288 21 21 591 571 60 60 0 0 GG 9.024259 30 0 849 0 KEEP - Rarb YES MNNG_3 chr14 18866148 18866148 C T exonic Thrb nonsynonymous SNV NM_009380:c.C1396T:p.P466S exonic Thrb nonsynonymous SNV uc007sho.2:c.C1396T:p.P466S exonic ENSMUSG00000021779 nonsynonymous SNV ENSMUST00000022304:c.C1396T:p.P466S 14qA2 NA NA chr14 18866148 TTCxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 125 0 0 72.509445 0.518519 0.02 1.123855 26 28 725 754 60 60 0 0 CC 19.852807 66 0 1858 0 KEEP + Thrb YES MNNG_3 chr14 21082107 21082107 G A exonic Kcnk16 synonymous SNV NM_029006:c.C750T:p.V250V exonic Kcnk16 synonymous SNV uc011zgl.1:c.C750T:p.V250V exonic ENSMUSG00000023387 synonymous SNV ENSMUST00000024155:c.C750T:p.V250V 14qA3 NA NA chr14 21082107 GAGxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38739 0.387407 0.999957 51 0 0 19.276259 0.4 0.02 -0.175154 12 8 311 213 60 60 0 0 GG 7.800136 26 0 688 0 KEEP - Kcnk16 YES MNNG_3 chr14 21369581 21369581 G A exonic Usp54 nonsynonymous SNV NM_030180:c.C4309T:p.P1437S exonic Usp54 nonsynonymous SNV uc007skb.1:c.C4309T:p.P1437S exonic ENSMUSG00000034235 nonsynonymous SNV ENSMUST00000022356:c.C4309T:p.P1437S 14qA3 NA NA chr14 21369581 GAGxTAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 75 0 0 31.419512 0.358974 0.02 -0.341917 25 14 675 358 60 60 0 0 GG 9.02277 30 0 822 0 KEEP - Usp54 YES MNNG_3 chr14 22566761 22566761 G A exonic Dusp13 synonymous SNV NM_001007268:c.C249T:p.F83F exonic Dusp13 synonymous SNV uc007slo.1:c.C249T:p.F83F exonic ENSMUSG00000021768 synonymous SNV ENSMUST00000075040:c.C249T:p.F83F 14qA3 NA NA chr14 22566761 GTAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.99986 42 0 0 32.27493 0.6 0.02 -0.175362 8 12 222 324 60 60 0 0 GG 5.715329 19 0 536 0 KEEP - Dusp13 YES MNNG_3 chr14 22804918 22804918 C T exonic Zfp503 nonsynonymous SNV NM_145459:c.G1151A:p.G384D exonic Zfp503 nonsynonymous SNV uc007slv.1:c.G1151A:p.G384D exonic ENSMUSG00000039081 nonsynonymous SNV ENSMUST00000043409:c.G1151A:p.G384D 14qA3 NA NA chr14 22804918 ACAxCGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 104 0 0 61.203321 0.520833 0.02 -0.420387 23 25 612 637 60 60 0 0 CC 13.232143 44 0 1191 0 KEEP - Zfp503 YES MNNG_3 chr14 29835239 29835239 C T exonic Lrtm1 synonymous SNV NM_176920:c.C477T:p.N159N exonic Lrtm1 synonymous SNV uc007suj.2:c.C477T:p.N159N exonic ENSMUSG00000045776 synonymous SNV ENSMUST00000055662:c.C477T:p.N159N 14qA3 NA NA chr14 29835239 GAAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 101 4 0 62.289649 0.581395 0.02 -0.37673 18 25 495 631 60 60 0 0 CC 14.43589 48 0 1319 0 KEEP + Lrtm1 YES MNNG_3 chr14 30879201 30879201 G A intronic Cacna1d NA NA intronic Cacna1d NA NA intronic ENSMUSG00000015968 NA NA 14qB NA NA chr14 30879201 ACAxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.999859 32 0 0 12.144441 0.416667 0.02 -0.105224 7 5 199 133 60 60 0 0 GG 5.415152 18 0 520 0 KEEP - Cacna1d YES MNNG_3 chr14 31411809 31411809 G A intronic Prkcd NA NA exonic Prkcd synonymous SNV uc007svi.1:c.C1605T:p.A535A exonic ENSMUSG00000021948 synonymous SNV ENSMUST00000112202:c.C1605T:p.A535A 14qB NA NA chr14 31411809 GCAxGCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 92 0 0 80.160647 0.659091 0.02 -0.385818 15 29 428 786 60 60 0 0 GG 11.732182 39 0 1115 0 KEEP - Prkcd YES MNNG_3 chr14 31826752 31826752 C T splicing Gnl3(NM_153547:exon13:c.1173-1G>A) NA NA splicing "Gnl3(uc007swi.2:exon13:c.1173-1G>A,uc007swj.2:exon13:c.333-1G>A)" NA NA splicing ENSMUSG00000042354(ENSMUST00000037739:exon13:c.1173-1G>A) NA NA 14qB NA NA chr14 31826752 GCAxTAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 242 1 0 114.301469 0.5 0.02 0.773244 47 47 1294 1202 60 60 0 0 CC 38.473104 128 0 3491 0 KEEP - Gnl3 YES MNNG_3 chr14 31956051 31956051 G A exonic Stab1 synonymous SNV NM_138672:c.C5712T:p.G1904G exonic Stab1 synonymous SNV uc007swv.1:c.C5712T:p.G1904G exonic ENSMUSG00000042286 synonymous SNV ENSMUST00000159249:c.C132T:p.G44G 14qB NA NA chr14 31956051 GCTxCCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 140 1 0 39.793864 0.36 0.02 -0.43838 32 18 896 454 60 60 0 0 GG 23.159944 77 0 2162 0 KEEP - Stab1 YES MNNG_3 chr14 32109694 32109694 A G exonic Dnah1 synonymous SNV NM_001033668:c.T4164C:p.R1388R exonic Dnahc1 synonymous SNV uc007sxk.2:c.T4164C:p.R1388R exonic ENSMUSG00000019027 synonymous SNV ENSMUST00000048603:c.T4164C:p.R1388R 14qB NA NA chr14 32109694 GCTxCGC A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290142 0.292001 0.993634 30 0 0 20.913368 0.470588 0.02 -0.149005 9 8 220 222 60 60 0 0 AA 3.605052 12 0 304 0 KEEP - Dnah1 NO MNNG_3 chr14 32292980 32292980 G A exonic Mettl6 synonymous SNV NM_025907:c.C690T:p.L230L exonic Mettl6 synonymous SNV uc007sxr.1:c.C555T:p.L185L exonic ENSMUSG00000021891 synonymous SNV ENSMUST00000112031:c.C555T:p.L185L 14qB NA NA chr14 32292980 AAAxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 151 0 0 52.133639 0.381818 0.02 1.212916 34 21 966 580 60 60 0 0 GG 19.331459 67 1 1910 7 KEEP - Mettl6 YES MNNG_3 chr14 32523932 32523932 C T intronic Ankrd28 NA NA intronic Ankrd28 NA NA intronic ENSMUSG00000014496 NA NA 14qB NA NA chr14 32523932 ATAxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 117 2 0 51.546489 0.44898 0.02 -0.438344 27 22 736 557 60 60 0 0 CC 16.542106 55 0 1514 0 KEEP - Ankrd28 YES MNNG_3 chr14 32742742 32742742 G A intergenic "Ankrd28(dist=99141),Galnt15(dist=99547)" NA NA intergenic "Ankrd28(dist=99141),Galntl2(dist=99547)" NA NA ncRNA_exonic ENSMUSG00000046005 NA NA 14qB NA NA chr14 32742742 CCCxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818358 0.818465 0.999869 59 0 0 10.859873 0.217391 0.02 -0.315467 18 5 453 137 60 60 0 0 GG 6.316436 21 0 589 0 KEEP NA Ankrd28 YES MNNG_3 chr14 32742760 32742760 G A intergenic "Ankrd28(dist=99159),Galnt15(dist=99529)" NA NA intergenic "Ankrd28(dist=99159),Galntl2(dist=99529)" NA NA ncRNA_exonic ENSMUSG00000046005 NA NA 14qB NA NA chr14 32742760 CCCxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78095 0.78106 0.999859 53 0 0 22.032994 0.45 0.02 -0.297579 11 9 253 237 60 60 0 0 GG 5.410973 18 0 475 0 KEEP NA Ankrd28 YES MNNG_3 chr14 33410942 33410942 G A intergenic "Ercc6(dist=16767),Prrxl1(dist=2171)" NA NA intergenic "Ercc6(dist=16767),Prrxl1(dist=1652)" NA NA intergenic "ENSMUSG00000054051(dist=16767),ENSMUSG00000041730(dist=1652)" NA NA 14qB NA NA chr14 33410942 CCTxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 116 1 0 69.055106 0.529412 0.02 1.15019 24 27 668 715 60 60 0 0 GG 13.828342 46 0 1277 0 KEEP NA Ercc6 YES MNNG_3 chr14 35409065 35409065 C T splicing "Opn4(NM_001128599:exon7:c.798-1G>A,NM_013887:exon7:c.798-1G>A)" NA NA splicing "Opn4(uc011ziw.1:exon7:c.798-1G>A,uc007tbh.2:exon7:c.798-1G>A)" NA NA splicing "ENSMUSG00000021799(ENSMUST00000168444:exon7:c.798-1G>A,ENSMUST00000022331:exon7:c.798-1G>A)" NA NA 14qB NA NA chr14 35409065 GCCxTAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 112 0 0 43.320626 0.459459 0.02 -0.324456 20 17 572 463 60 60 0 0 CC 15.942798 53 0 1502 0 KEEP - Opn4 YES MNNG_3 chr14 36902838 36902838 G A intergenic "4930596D02Rik(dist=277674),4930474N05Rik(dist=5313)" NA NA intergenic "4930596D02Rik(dist=277674),4930474N05Rik(dist=5313)" NA NA exonic ENSMUSG00000072616 synonymous SNV ENSMUST00000100708:c.C183T:p.Y61Y 14qB NA NA chr14 36902838 GAAxTAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 422 1 4 109.71813 0.347518 0.02 2.056355 92 49 2524 1259 60 60 0 0 GG 66.760075 222 0 6134 0 KEEP NA 4930596D02Rik YES MNNG_3 chr14 42163872 42163872 C A intergenic "Sftpd(dist=165385),1700091H14Rik(dist=504685)" NA NA intergenic "Sftpd(dist=165385),AK047145(dist=898271)" NA NA intronic ENSMUSG00000090345 NA NA 14qB "Score=0.991191;Name=No.50818,chr14:43031124" NA chr14 42163872 ATTxTTT C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 439 1 82 34.250301 0.195652 0.02 0.693285 74 18 2104 454 55 35 0 0 CC 75.805291 252 0 7246 0 KEEP NA Sftpd NO MNNG_3 chr14 44024059 44024059 G A intronic 1700001F09Rik NA NA intronic 1700001F09Rik NA NA intronic ENSMUSG00000072603 NA NA 14qC1 "Score=0.984157;Name=No.51054,chr14:42268032" NA chr14 44024059 TAAxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 424 2 2 22.114572 0.098361 0.02 2.222942 110 12 3060 334 60 57 0 0 GG 75.180508 250 0 6981 0 KEEP - 1700001F09Rik YES MNNG_3 chr14 48315249 48315249 G A intronic Ktn1 NA NA intronic Ktn1 NA NA intronic ENSMUSG00000021843 NA NA 14qC1 NA NA chr14 48315249 GGTxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 64 0 0 42.173097 0.681818 0.02 -0.192913 7 15 200 410 60 60 0 0 GG 10.220901 34 0 962 0 KEEP + Ktn1 YES MNNG_3 chr14 50145181 50145181 C T intronic Slc35f4 NA NA intronic Slc35f4 NA NA intronic ENSMUSG00000021852 NA NA 14qC1 NA NA chr14 50145181 CGTxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 45 0 0 19.798699 0.421053 0.02 -0.166601 11 8 306 216 60 60 0 0 CC 5.414372 18 0 509 0 KEEP - Slc35f4 YES MNNG_3 chr14 50918286 50918286 T A exonic Olfr733 stopgain SNV NM_146663:c.A697T:p.K233X exonic Olfr733 stopgain SNV uc007tkw.2:c.A697T:p.K233X exonic ENSMUSG00000090874 stopgain SNV ENSMUST00000163469:c.A697T:p.K233X 14qC1 NA NA chr14 50918286 TTTxTCC T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 68 0 5 33.141313 0.5 0.02 -0.245463 14 14 386 349 60 60 0 0 TT 9.926086 33 0 919 0 KEEP - Olfr733 NO MNNG_3 chr14 52834843 52834843 C T intronic Chd8 NA NA intronic Chd8 NA NA intronic ENSMUSG00000053754 NA NA 14qC2 NA NA chr14 52834843 AGAxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 150 1 0 62.374454 0.481481 0.02 1.124507 28 26 746 662 60 60 0 0 CC 24.060466 80 0 2191 0 KEEP - Chd8 YES MNNG_3 chr14 52991919 52991919 C T exonic Olfr1512 nonsynonymous SNV NM_146432:c.G808A:p.D270N exonic Olfr1512 nonsynonymous SNV uc007tph.1:c.G808A:p.D270N exonic ENSMUSG00000060640 nonsynonymous SNV ENSMUST00000071221:c.G808A:p.D270N 14qC2 NA NA chr14 52991919 CATxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 143 3 0 71.393842 0.491228 0.02 1.097561 29 28 808 752 60 60 0 0 CC 21.957586 73 0 2055 0 KEEP - Olfr1512 YES MNNG_3 chr14 54210761 54210761 C T intergenic "Olfr1507(dist=1095391),A430107P09Rik(dist=74854)" NA NA exonic Gm16979 synonymous SNV uc007tsr.1:c.C7T:p.L3L exonic ENSMUSG00000076842 synonymous SNV ENSMUST00000103654:c.C7T:p.L3L 14qC2 NA NA chr14 54210761 CTCxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 705 50 16 76.287773 0.179245 0.02 4.451813 174 38 4936 1014 60 60 0 1 CC 106.488237 354 0 10074 0 KEEP NA Olfr1507 YES MNNG_3 chr14 54285658 54285658 G A UTR5 A430107P09Rik NA NA ncRNA_UTR5 Gm13917 NA NA UTR5 ENSMUSG00000076849 NA NA 14qC2 "Score=0.964541;Name=No.53384,chr14:53842659" NA chr14 54285658 AAGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 368 0 15 70.91868 0.25 0.02 1.78135 99 33 2727 874 60 60 0 0 GG 53.459098 178 0 4939 0 KEEP + A430107P09Rik YES MNNG_3 chr14 55495101 55495101 C T UTR3 Ppp1r3e NA NA ncRNA_exonic AK131886 NA NA ncRNA_exonic ENSMUSG00000072494 NA NA 14qC3 NA NA chr14 55495101 GCTxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 385 2 0 141.239474 0.534653 0.02 2.39827 47 54 1310 1458 70 70 0 0 CC 65.550573 220 1 6145 5 KEEP - Ppp1r3e YES MNNG_3 chr14 55729062 55729062 C T intronic Jph4 NA NA intronic Jph4 NA NA intronic ENSMUSG00000022208 NA NA 14qC3 NA NA chr14 55729062 GGCxGAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 137 2 0 50.723543 0.47619 0.02 -0.368041 22 20 529 538 60 60 0 0 CC 21.319822 71 0 1785 0 KEEP - Jph4 YES MNNG_3 chr14 56116570 56116570 C T exonic Lrrc16b synonymous SNV NM_001024645:c.C1462T:p.L488L exonic Lrrc16b synonymous SNV uc007tyo.1:c.C1462T:p.L488L exonic ENSMUSG00000022211 synonymous SNV ENSMUST00000076236:c.C1462T:p.L488L 14qC3 NA NA chr14 56116570 GATxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 101 0 0 53.96596 0.567568 0.02 -0.332612 16 21 450 550 60 60 0 0 CC 15.340066 51 0 1449 0 KEEP + Lrrc16b YES MNNG_3 chr14 56214952 56214952 G A exonic Rnf31 nonsynonymous SNV NM_194346:c.G1579A:p.E527K exonic Rnf31 nonsynonymous SNV uc007tzi.1:c.G1579A:p.E527K exonic ENSMUSG00000047098 nonsynonymous SNV ENSMUST00000019443:c.G1579A:p.E527K 14qC3 NA NA chr14 56214952 CTGxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 47 0 0 27.556245 0.458333 0.02 -0.219019 13 11 365 295 60 60 0 0 GG 5.113626 17 0 482 0 KEEP + Rnf31 YES MNNG_3 chr14 56237395 56237395 G A UTR5 Rec8 NA NA UTR5 Rec8 NA NA UTR5 ENSMUSG00000002324 NA NA 14qC3 NA NA chr14 56237395 TGAxATC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 56 0 0 20.509643 0.470588 0.02 -0.149076 9 8 259 218 60 60 0 0 GG 7.82199 26 0 754 0 KEEP + Rec8 YES MNNG_3 chr14 56324316 56324316 C T exonic Tgm1 nonsynonymous SNV NM_001161714:c.G1903A:p.V635M exonic Tgm1 nonsynonymous SNV uc007uag.2:c.G1903A:p.V635M exonic ENSMUSG00000022218 nonsynonymous SNV ENSMUST00000002389:c.G1903A:p.V635M 14qC3 NA NA chr14 56324316 TCAxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 126 0 0 61.604786 0.531915 0.02 -0.420806 22 25 608 638 60 60 0 0 CC 18.346189 61 0 1678 0 KEEP - Tgm1 YES MNNG_3 chr14 56452457 56452457 C T exonic Nfatc4 nonsynonymous SNV NM_023699:c.C2702T:p.A901V exonic Nfatc4 nonsynonymous SNV uc007uax.2:c.C2702T:p.A901V exonic ENSMUSG00000023411 nonsynonymous SNV ENSMUST00000024179:c.C2702T:p.A901V 14qC3 NA NA chr14 56452457 CTGxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 121 0 0 54.947606 0.488889 0.02 -0.39452 23 22 633 580 60 60 0 0 CC 16.172982 54 0 1467 0 KEEP + Nfatc4 YES MNNG_3 chr14 56590416 56590416 C T intronic Cma2 NA NA intronic Cma2 NA NA intronic ENSMUSG00000068289 NA NA 14qC3 NA NA chr14 56590416 TAGxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 95 0 1 40.389288 0.444444 0.02 -0.315681 20 16 566 435 60 60 0 0 CC 16.243893 54 0 1542 0 KEEP + Cma2 YES MNNG_3 chr14 57005905 57005905 G A intronic Atp12a NA NA intronic Atp12a NA NA intronic ENSMUSG00000022229 NA NA 14qC3 NA NA chr14 57005905 GAGxTGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 138 0 0 68.687243 0.5 0.02 1.106408 28 28 764 722 60 60 0 0 GG 19.54874 65 0 1786 0 KEEP + Atp12a YES MNNG_3 chr14 57922448 57922448 C T exonic Cryl1 synonymous SNV NM_030004:c.G615A:p.E205E exonic Cryl1 synonymous SNV uc007ucz.1:c.G615A:p.E205E exonic ENSMUSG00000021947 synonymous SNV ENSMUST00000022517:c.G615A:p.E205E 14qC3 NA NA chr14 57922448 GGCxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 45 0 0 9.271274 0.285714 0.02 -0.122769 10 4 283 110 60 60 0 0 CC 6.908905 23 0 630 0 KEEP - Cryl1 YES MNNG_3 chr14 59967882 59967882 G A UTR3 Phf11d NA NA UTR3 "D14Ertd668e,Phf11" NA NA UTR3 ENSMUSG00000068245 NA NA 14qC3 NA NA chr14 59967882 ACAxCTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 123 2 21 49.210654 0.47619 0.02 -0.368257 22 20 620 523 60 60 0 0 GG 18.648715 62 0 1739 0 KEEP - Phf11d YES MNNG_3 chr14 6109082 6109082 A C intergenic "Gm3383(dist=175529),Gm3494(dist=342652)" NA NA intronic "Gm10406,Gm2897" NA NA exonic ENSMUSG00000090643 nonsynonymous SNV ENSMUST00000170686:c.T388G:p.F130V 14qA1 "Score=0.974713;Name=No.41865,chr14:3130473" NA chr14 6109082 AGAxCTT A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 753 14 194 14.184746 0.074766 0.02 2.443763 99 8 2560 227 36 34 0 0 AA 151.502071 504 0 13548 0 KEEP NA Gm3383 NO MNNG_3 chr14 61325616 61325616 T G exonic Spata13 synonymous SNV NM_001033272:c.T1620G:p.P540P exonic Spata13 synonymous SNV uc007ufc.2:c.T1620G:p.P540P exonic ENSMUSG00000021990 synonymous SNV ENSMUST00000022566:c.T1620G:p.P540P 14qD1 NA NA chr14 61325616 GCCxCGA T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 75 0 0 22.88482 0.354839 0.02 -0.271705 20 11 548 264 60 60 0 0 TT 9.891049 33 0 898 0 KEEP + Spata13 NO MNNG_3 chr14 64484945 64484945 G A exonic Pinx1 synonymous SNV NM_028228:c.G135A:p.L45L exonic Pinx1 synonymous SNV uc007uhx.2:c.G135A:p.L45L exonic ENSMUSG00000021958 synonymous SNV ENSMUST00000022528:c.G135A:p.L45L 14qD1 NA NA chr14 64484945 TTTxGGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 76 0 0 29.402616 0.521739 0.02 -0.20164 11 12 310 306 60 60 0 0 GG 12.618985 42 0 1180 0 KEEP + Pinx1 YES MNNG_3 chr14 64590219 64590219 G A exonic 4930578I06Rik nonsynonymous SNV NM_026359:c.C740T:p.A247V exonic 4930578I06Rik nonsynonymous SNV uc007uhz.1:c.C740T:p.A247V exonic ENSMUSG00000021961 nonsynonymous SNV ENSMUST00000022532:c.C740T:p.A247V 14qD1 NA NA chr14 64590219 AAGxCTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552864 0.552887 0.999957 56 0 0 42.630092 0.64 0.02 -0.219185 9 16 247 421 60 60 0 0 GG 7.819691 26 0 712 0 KEEP - 4930578I06Rik YES MNNG_3 chr14 64728460 64728460 G A exonic Prss52 nonsynonymous SNV NM_028525:c.G245A:p.G82E exonic Prss52 nonsynonymous SNV uc007uie.1:c.G245A:p.G82E exonic ENSMUSG00000021966 nonsynonymous SNV ENSMUST00000022537:c.G245A:p.G82E 14qD1 NA NA chr14 64728460 GTGxGGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 116 2 0 46.251384 0.486486 0.02 -0.324408 19 18 517 488 60 60 0 0 GG 17.73385 59 0 1625 0 KEEP + Prss52 YES MNNG_3 chr14 66010894 66010894 C T exonic Zfp395 synonymous SNV NM_199029:c.C819T:p.N273N exonic Zfp395 synonymous SNV uc007ujg.2:c.C819T:p.N273N exonic ENSMUSG00000034522 synonymous SNV ENSMUST00000066994:c.C819T:p.N273N 14qD1 NA NA chr14 66010894 GAAxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 153 0 0 15.283286 0.242424 0.02 -0.36799 25 8 680 194 70 70 0 0 CC 29.054475 97 0 2501 0 KEEP + Zfp395 YES MNNG_3 chr14 66659043 66659043 C T exonic Adam2 nonsynonymous SNV NM_009618:c.G1609A:p.E537K exonic Adam2 nonsynonymous SNV uc007uju.1:c.G1609A:p.E537K exonic ENSMUSG00000022039 nonsynonymous SNV ENSMUST00000022618:c.G1609A:p.E537K 14qD1 NA NA chr14 66659043 ATTxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 106 0 0 28.198525 0.44 0.02 -0.219231 14 11 397 304 60 60 0 0 CC 18.640726 62 0 1739 0 KEEP - Adam2 YES MNNG_3 chr14 67856263 67856263 C T intronic Ebf2 NA NA intronic Ebf2 NA NA intronic ENSMUSG00000022053 NA NA 14qD1 NA NA chr14 67856263 TCTxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 250 0 0 121.907322 0.547619 0.02 0.860757 38 46 1094 1251 60 60 0 0 CC 38.180214 127 0 3591 0 KEEP + Ebf2 YES MNNG_3 chr14 68427139 68427139 C T exonic Dock5 synonymous SNV NM_177780:c.G2250A:p.T750T exonic Dock5 synonymous SNV uc007ull.1:c.G2250A:p.T750T exonic ENSMUSG00000044447 synonymous SNV ENSMUST00000039135:c.G2250A:p.T750T 14qD1 NA NA chr14 68427139 TTCxGTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552837 0.552887 0.999909 51 0 0 30.712445 0.48 0.02 -0.219042 13 12 309 325 60 60 0 0 CC 7.208515 24 0 576 0 KEEP - Dock5 YES MNNG_3 chr14 70760099 70760099 G A intergenic "Slc39a14(dist=8868),Piwil2(dist=12188)" NA NA intergenic "Slc39a14(dist=8868),Piwil2(dist=12188)" NA NA ncRNA_exonic ENSMUSG00000058745 NA NA 14qD2 "Score=0.991736;Name=No.55367,chr4:62054838" NA chr14 70760099 GATxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 164 0 16 62.636309 0.411765 0.02 0.903894 40 28 1099 693 60 60 0 0 GG 22.556788 75 0 2057 0 KEEP NA Slc39a14 YES MNNG_3 chr14 70932942 70932942 G A intronic Lgi3 NA NA intronic Lgi3 NA NA intronic ENSMUSG00000033595 NA NA 14qD2 NA NA chr14 70932942 TTGxGAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.13983 0.139832 0.999988 44 0 0 12.144607 0.416667 0.02 -0.10522 7 5 195 133 60 60 0 0 GG 7.986943 27 0 668 0 KEEP + Lgi3 YES MNNG_3 chr14 70965086 70965086 G T intronic Hr NA NA intronic Hr NA NA intronic ENSMUSG00000022096 NA NA 14qD2 NA NA chr14 70965086 GGGxTGG G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 50 0 0 18.197061 0.583333 0.02 -0.105199 5 7 132 184 60 60 0 0 GG 8.71603 29 0 777 0 KEEP + Hr NO MNNG_3 chr14 73430143 73430143 C T UTR5 Cysltr2 NA NA UTR5 Cysltr2 NA NA UTR5 ENSMUSG00000033470 NA NA 14qD3 NA NA chr14 73430143 AATxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 89 0 0 51.814179 0.47619 0.02 -0.368298 22 20 622 549 60 60 0 0 CC 12.633806 42 0 1193 0 KEEP - Cysltr2 YES MNNG_3 chr14 74196919 74196919 C T intergenic "Sucla2(dist=200970),4933402J15Rik(dist=558415)" NA NA intergenic "AK158291(dist=65096),AK135997(dist=112173)" NA NA ncRNA_exonic ENSMUSG00000075581 NA NA 14qD3 NA NA chr14 74196919 AAAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 152 4 54 30.982858 0.433333 0.02 -0.289331 17 13 469 337 60 57 0 0 CC 25.248293 84 0 2291 0 KEEP NA Sucla2 YES MNNG_3 chr14 75432210 75432210 C T exonic 5031414D18Rik nonsynonymous SNV NM_198642:c.C500T:p.T167I exonic 5031414D18Rik nonsynonymous SNV uc007uqk.1:c.C500T:p.T167I exonic ENSMUSG00000034959 nonsynonymous SNV ENSMUST00000036072:c.C500T:p.T167I 14qD3 NA NA chr14 75432210 AGAxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 270 0 0 159.383025 0.568807 0.02 2.230353 47 62 1316 1622 60 60 0 0 CC 39.970861 133 0 3717 0 KEEP + 5031414D18Rik YES MNNG_3 chr14 76530754 76530754 C T intronic Nufip1 NA NA intronic Nufip1 NA NA intronic ENSMUSG00000022009 NA NA 14qD3 NA NA chr14 76530754 ACTxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 96 1 0 45.765708 0.473684 0.02 -0.333217 20 18 570 486 60 60 0 0 CC 14.125743 47 0 1309 0 KEEP + Nufip1 YES MNNG_3 chr14 7839760 7839760 G A UTR3 Gm10406 NA NA UTR3 Gm10406 NA NA UTR3 ENSMUSG00000072735 NA NA 14qA1 "Score=0.981061;Name=No.49455,chr14:6892153" NA chr14 7839760 CTGxACT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1991 19 167 30.27513 0.030968 0.02 16.651332 751 24 21154 651 52 37 0 0 GG 284.542131 946 0 26714 0 KEEP - Gm10406 YES MNNG_3 chr14 79325159 79325159 T G exonic Vwa8 nonsynonymous SNV NM_027906:c.T571G:p.L191V exonic 1300010F03Rik nonsynonymous SNV uc007usp.2:c.T571G:p.L191V exonic ENSMUSG00000058997 nonsynonymous SNV ENSMUST00000012714:c.T571G:p.L191V 14qD3 NA NA chr14 79325159 AACxTGC T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999998 60 3 0 7.771436 0.190476 0.02 -0.184107 17 4 460 103 60 60 0 1 TT 9.918629 33 0 905 0 KEEP + Vwa8 NO MNNG_3 chr14 79828750 79828750 G A UTR3 Kbtbd7 NA NA UTR3 Kbtbd7 NA NA UTR3 ENSMUSG00000043881 NA NA 14qD3 NA NA chr14 79828750 ATAxTAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979524 0.979526 0.999997 99 0 0 45.180489 0.363636 0.02 1.106375 35 20 967 513 60 60 0 0 GG 9.324049 31 0 861 0 KEEP + Kbtbd7 YES MNNG_3 chr15 100766941 100766941 G A exonic Scn8a synonymous SNV NM_011323:c.G186A:p.G62G exonic Scn8a nonsynonymous SNV uc007xsi.1:c.G194A:p.G65E exonic ENSMUSG00000090536 synonymous SNV ENSMUST00000096198:c.G186A:p.G62G 15qF2 NA NA chr15 100766941 GGGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 177 0 0 84.111341 0.435897 0.02 1.011308 44 34 1235 911 60 60 0 0 GG 23.15545 77 0 2123 0 KEEP + Scn8a YES MNNG_3 chr15 101380706 101380706 G A exonic Krt82 nonsynonymous SNV NM_053249:c.C329T:p.T110I exonic Krt82 nonsynonymous SNV uc007xtn.2:c.C329T:p.T110I exonic ENSMUSG00000049548 nonsynonymous SNV ENSMUST00000023713:c.C329T:p.T110I 15qF2 NA NA chr15 101380706 ACGxTCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899187 0.899314 0.999859 68 0 0 48.785233 0.5 0.02 -0.368144 20 20 546 513 60 60 0 0 GG 5.413624 18 0 494 0 KEEP - Krt82 YES MNNG_3 chr15 101510100 101510100 G A intronic "Krt6b,Krt85" NA NA intronic Krt6b NA NA intronic ENSMUSG00000023041 NA NA 15qF2 "Score=0.925956;Name=No.57830,chr15:101520896" NA chr15 101510100 TCAxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 87 0 6 29.458514 0.302326 0.02 -0.377054 30 13 843 347 60 60 0 0 GG 11.73211 39 0 1113 0 KEEP NA Krt6b YES MNNG_3 chr15 101691689 101691689 G A exonic Krt77 synonymous SNV NM_001003667:c.C1176T:p.I392I exonic Krt77 synonymous SNV uc007xud.1:c.C1176T:p.I392I exonic ENSMUSG00000067594 synonymous SNV ENSMUST00000087996:c.C1176T:p.I392I 15qF3 NA NA chr15 101691689 CTGxATG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 259 0 0 89.779481 0.309524 0.02 2.18907 87 39 2420 1050 60 60 0 0 GG 29.179619 97 0 2765 0 KEEP - Krt77 YES MNNG_3 chr15 101777177 101777177 G A exonic Krt78 nonsynonymous SNV NM_212487:c.C2629T:p.P877S exonic Krt78 nonsynonymous SNV uc007xuh.1:c.C2629T:p.P877S exonic ENSMUSG00000050463 nonsynonymous SNV ENSMUST00000164932:c.C2629T:p.P877S 15qF3 NA NA chr15 101777177 CAGxCAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 812 0 3 230.841108 0.338658 0.02 6.526627 207 106 5598 2673 60 60 0 0 GG 116.942318 393 1 10621 9 KEEP - Krt78 YES MNNG_3 chr15 101919167 101919167 G A exonic Eif4b nonsynonymous SNV NM_145625:c.G788A:p.S263N exonic Eif4b nonsynonymous SNV uc007xuk.2:c.G788A:p.S263N exonic ENSMUSG00000058655 nonsynonymous SNV ENSMUST00000078635:c.G788A:p.S263N 15qF3 NA NA chr15 101919167 GCAxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.63775 0.641347 0.994391 44 0 0 25.998552 0.392857 0.02 -0.245487 17 11 466 289 60 60 0 0 GG 3.908538 13 0 352 0 KEEP + Eif4b YES MNNG_3 chr15 10255713 10255713 G A exonic Prlr synonymous SNV NM_001253782:c.G762A:p.K254K exonic Prlr synonymous SNV uc007vfw.1:c.G762A:p.K254K exonic ENSMUSG00000005268 synonymous SNV ENSMUST00000110548:c.G762A:p.K254K 15qA1 NA NA chr15 10255713 GAAxGGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 117 0 0 68.949913 0.509804 0.02 1.248012 25 26 696 719 60 60 0 0 GG 16.543439 55 0 1542 0 KEEP + Prlr YES MNNG_3 chr15 25665879 25665879 G A intronic Myo10 NA NA intronic Myo10 NA NA intronic ENSMUSG00000022272 NA NA 15qB1 NA NA chr15 25665879 GCAxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693229 0.693668 0.999366 51 0 0 23.377305 0.333333 0.02 -0.263052 20 10 557 269 60 60 0 0 GG 5.112187 17 0 466 0 KEEP + Myo10 YES MNNG_3 chr15 31412286 31412286 G A exonic March6 nonsynonymous SNV NM_172606:c.C1520T:p.P507L exonic March6 nonsynonymous SNV uc007vkh.1:c.C1520T:p.P507L exonic ENSMUSG00000039100 nonsynonymous SNV ENSMUST00000043826:c.C1517T:p.P506L 15qB2 NA NA chr15 31412286 TTAxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 157 2 0 67.320933 0.391304 0.02 1.090154 42 27 1186 745 60 60 0 0 GG 20.146962 67 0 1890 0 KEEP - March6 YES MNNG_3 chr15 3227306 3227306 G A intronic Sepp1 NA NA intronic Sepp1 NA NA intronic ENSMUSG00000064373 NA NA 15qA1 NA NA chr15 3227306 GGGxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.89919 0.899314 0.999863 67 0 0 29.816737 0.309524 0.02 -0.368279 29 13 809 349 60 60 0 0 GG 6.01524 20 0 551 0 KEEP + Sepp1 YES MNNG_3 chr15 33179840 33179840 G A exonic Cpq nonsynonymous SNV NM_176073:c.G587A:p.G196E exonic Pgcp nonsynonymous SNV uc007vkz.1:c.G323A:p.G108E exonic ENSMUSG00000039007 nonsynonymous SNV ENSMUST00000042167:c.G587A:p.G196E 15qB3.1 NA NA chr15 33179840 TGGxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999997 102 0 0 62.805962 0.431034 0.02 1.088841 33 25 919 681 60 60 0 0 GG 9.625803 32 0 904 0 KEEP + Cpq YES MNNG_3 chr15 36706093 36706093 G A exonic Ywhaz nonsynonymous SNV NM_001253807:c.C263T:p.A88V exonic Ywhaz nonsynonymous SNV uc007vna.2:c.C326T:p.A109V exonic ENSMUSG00000022285 nonsynonymous SNV ENSMUST00000110361:c.C326T:p.A109V 15qB3.1 NA NA chr15 36706093 GAAxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 120 0 2 91.41797 0.636364 0.02 1.11516 20 35 556 904 60 60 0 0 GG 16.542338 55 0 1515 0 KEEP - Ywhaz YES MNNG_3 chr15 3985366 3985366 G A exonic Oxct1 nonsynonymous SNV NM_024188:c.G185A:p.G62D exonic Oxct1 nonsynonymous SNV uc007vck.2:c.G185A:p.G62D exonic ENSMUSG00000022186 nonsynonymous SNV ENSMUST00000110690:c.G185A:p.G62D 15qA1 NA NA chr15 3985366 TTGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 85 0 0 49.963617 0.488372 0.02 -0.376904 22 21 593 529 60 60 0 0 GG 10.225134 34 0 921 0 KEEP + Oxct1 YES MNNG_3 chr15 4867428 4867428 G A intronic Mroh2b NA NA intronic Heatr7b2 NA NA intronic ENSMUSG00000022155 NA NA 15qA1 NA NA chr15 4867428 TGGxATA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 95 1 0 56.823262 0.538462 0.02 -0.342003 18 21 511 585 60 60 0 0 GG 8.846552 38 1 1060 24 KEEP + Mroh2b YES MNNG_3 chr15 51619466 51619466 G A exonic Eif3h nonsynonymous SNV NM_080635:c.C947T:p.S316L exonic Eif3h nonsynonymous SNV uc007vrb.1:c.C947T:p.S316L exonic ENSMUSG00000022312 nonsynonymous SNV ENSMUST00000022925:c.C947T:p.S316L 15qC NA NA chr15 51619466 AGTxAAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 178 0 0 129.476882 0.6125 0.02 0.994116 31 49 869 1293 60 60 0 0 GG 22.563064 75 0 2168 0 KEEP - Eif3h YES MNNG_3 chr15 57751523 57751523 G A exonic Tbc1d31 nonsynonymous SNV NM_001081396:c.G262A:p.A88T exonic Wdr67 nonsynonymous SNV uc007vss.1:c.G262A:p.A88T exonic ENSMUSG00000022364 nonsynonymous SNV ENSMUST00000022992:c.G262A:p.A88T 15qD1 NA NA chr15 57751523 ACAxCTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 118 0 0 39.991057 0.310345 0.02 1.089059 40 18 1094 470 60 60 0 0 GG 12.633499 42 0 1178 0 KEEP + Tbc1d31 YES MNNG_3 chr15 64599450 64599450 G A exonic Adcy8 synonymous SNV NM_009623:c.C2022T:p.D674D exonic Adcy8 synonymous SNV uc007vzo.1:c.C2022T:p.D674D exonic ENSMUSG00000022376 synonymous SNV ENSMUST00000023007:c.C2022T:p.D674D 15qD1 NA NA chr15 64599450 CAAxTCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 143 1 0 52.817679 0.359375 0.02 1.036205 41 23 1134 600 60 60 0 0 GG 16.843966 56 0 1562 0 KEEP - Adcy8 YES MNNG_3 chr15 66514138 66514138 G A exonic Tg synonymous SNV NM_009375:c.G1839A:p.G613G exonic Tg synonymous SNV uc007wap.1:c.G1839A:p.G613G exonic ENSMUSG00000053469 synonymous SNV ENSMUST00000065916:c.G1839A:p.G613G 15qD2 NA NA chr15 66514138 TGGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 204 0 0 85.759012 0.380435 0.02 0.790811 57 35 1580 956 60 60 0 0 GG 26.772812 89 0 2529 0 KEEP + Tg YES MNNG_3 chr15 6765791 6765791 T C exonic Osmr synonymous SNV NM_011019:c.A2496G:p.P832P exonic Osmr synonymous SNV uc007vdt.2:c.A2496G:p.P832P exonic ENSMUSG00000022146 synonymous SNV ENSMUST00000022746:c.A2496G:p.P832P 15qA1 NA NA chr15 6765791 GATxGGC T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.83564 0.835716 0.999909 66 0 0 112.191867 1 0.02 -0.324215 0 37 0 946 0 60 0 0 TT 7.206121 24 0 639 0 KEEP - Osmr NO MNNG_3 chr15 71646412 71646412 G A exonic Col22a1 nonsynonymous SNV NM_027174:c.C3956T:p.P1319L exonic Col22a1 nonsynonymous SNV uc007wbj.2:c.C3956T:p.P1319L exonic ENSMUSG00000079022 nonsynonymous SNV ENSMUST00000159993:c.C3956T:p.P1319L 15qD3 NA NA chr15 71646412 CCAxGTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.420331 0.423478 0.99257 35 0 0 19.855395 0.380952 0.02 -0.184151 13 8 365 221 60 60 0 0 GG 2.406579 8 0 228 0 KEEP - Col22a1 YES MNNG_3 chr15 71725297 71725297 C T exonic Col22a1 nonsynonymous SNV NM_027174:c.G2776A:p.G926S exonic Col22a1 nonsynonymous SNV uc007wbj.2:c.G2776A:p.G926S exonic ENSMUSG00000079022 nonsynonymous SNV ENSMUST00000160513:c.G109A:p.G37S 15qD3 NA NA chr15 71725297 CACxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.735522 0.739671 0.994391 54 0 0 53.534505 0.625 0.02 -0.280547 12 20 334 532 60 60 0 0 CC 3.909899 13 0 360 0 KEEP - Col22a1 YES MNNG_3 chr15 73352777 73352777 C T exonic Dennd3 nonsynonymous SNV NM_001081066:c.C220T:p.L74F exonic Dennd3 nonsynonymous SNV uc007wce.1:c.C220T:p.L74F exonic ENSMUSG00000036661 nonsynonymous SNV ENSMUST00000043414:c.C220T:p.L74F 15qD3 NA NA chr15 73352777 GCTxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 141 3 0 121.023355 0.666667 0.02 1.009871 22 44 629 1183 60 60 0 0 CC 18.048729 60 0 1706 0 KEEP + Dennd3 YES MNNG_3 chr15 74359962 74359962 C T exonic Bai1 nonsynonymous SNV NM_174991:c.C376T:p.L126F exonic Bai1 nonsynonymous SNV uc007wco.1:c.C376T:p.L126F exonic ENSMUSG00000034730 nonsynonymous SNV ENSMUST00000042035:c.C376T:p.L126F 15qD3 NA NA chr15 74359962 CGGxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 254 1 0 200.309208 0.622951 0.02 2.098776 46 76 1281 1992 60 60 0 0 CC 31.844074 106 0 2912 0 KEEP + Bai1 YES MNNG_3 chr15 74455075 74455075 G A intronic Mroh4 NA NA intronic 1700016M24Rik NA NA intronic ENSMUSG00000022603 NA NA 15qD3 NA NA chr15 74455075 CTTxCCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099162 0.099721 0.994391 27 0 0 9.497307 0.5 0.02 -0.087675 4 4 115 100 60 70 0 0 GG 3.90978 13 0 359 0 KEEP - Mroh4 YES MNNG_3 chr15 75726760 75726760 C T exonic Eef1d synonymous SNV NM_023240:c.G525A:p.R175R exonic Eef1d synonymous SNV uc007whm.1:c.G453A:p.R151R exonic ENSMUSG00000055762 synonymous SNV ENSMUST00000151066:c.G252A:p.R84R 15qD3 NA NA chr15 75726760 CTCxCGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 51 1 0 30.016459 0.6 0.02 -0.174803 8 12 222 302 60 60 0 0 CC 8.121191 27 0 750 0 KEEP - Eef1d YES MNNG_3 chr15 75896472 75896472 C T intronic Scrib NA NA intronic Scrib NA NA intronic ENSMUSG00000022568 NA NA 15qD3 NA NA chr15 75896472 TGAxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 105 0 0 68.911267 0.6 0.02 -0.394504 18 27 492 692 60 60 0 0 CC 14.431345 48 0 1293 0 KEEP - Scrib YES MNNG_3 chr15 76008093 76008093 C T exonic Plec synonymous SNV NM_011117:c.G8226A:p.Q2742Q exonic Plec synonymous SNV uc007wir.2:c.G8139A:p.Q2713Q exonic ENSMUSG00000022565 synonymous SNV ENSMUST00000023226:c.G8139A:p.Q2713Q 15qD3 NA NA chr15 76008093 CCGxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 199 0 0 124.612643 0.515152 0.02 0.72968 48 51 1339 1301 60 60 0 0 CC 19.039664 66 1 1878 7 KEEP - Plec YES MNNG_3 chr15 76072974 76072974 C T exonic Parp10 nonsynonymous SNV NM_001163576:c.G523A:p.V175M exonic Parp10 nonsynonymous SNV uc007wjj.2:c.G523A:p.V175M exonic ENSMUSG00000063268 nonsynonymous SNV ENSMUST00000165738:c.G523A:p.V175M 15qD3 NA NA chr15 76072974 CCAxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 187 1 0 158.107793 0.648936 0.02 0.764629 33 61 873 1555 60 60 0 0 CC 21.955145 73 0 1996 0 KEEP - Parp10 YES MNNG_3 chr15 76176080 76176080 C T intronic Cyc1 NA NA intronic Cyc1 NA NA intronic ENSMUSG00000022551 NA NA 15qD3 NA NA chr15 76176080 GTTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999998 102 0 0 77.135421 0.537037 0.02 1.123831 25 29 703 795 60 60 0 1 CC 10.18126 34 0 936 0 KEEP + Cyc1 YES MNNG_3 chr15 76224355 76224355 G A exonic Mroh1 nonsynonymous SNV NM_001162489:c.G145A:p.E49K exonic Heatr7a nonsynonymous SNV uc007wkd.1:c.G145A:p.E49K exonic ENSMUSG00000022558 nonsynonymous SNV ENSMUST00000159218:c.G145A:p.E49K 15qD3 NA NA chr15 76224355 GAGxAGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 239 2 0 92.121176 0.361111 0.02 2.345766 69 39 1921 1042 60 60 0 0 GG 27.960517 93 0 2603 0 KEEP + Mroh1 YES MNNG_3 chr15 76262801 76262801 G A splicing Mroh1(NM_175457:exon24:c.2323-1G>A) NA NA splicing Heatr7a(uc007wkc.2:exon24:c.2323-1G>A) NA NA splicing ENSMUSG00000022558(ENSMUST00000096385:exon24:c.2323-1G>A) NA NA 15qD3 NA NA chr15 76262801 TTAxGTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 89 0 0 43.931035 0.4 0.02 -0.394597 27 18 766 485 60 60 0 0 GG 8.422766 28 0 797 0 KEEP + Mroh1 YES MNNG_3 chr15 76283928 76283928 G A exonic Bop1 synonymous SNV NM_013481:c.C2010T:p.D670D exonic Bop1 synonymous SNV uc007wkf.1:c.C2010T:p.D670D exonic ENSMUSG00000022557 synonymous SNV ENSMUST00000023217:c.C2010T:p.D670D 15qD3 NA NA chr15 76283928 GCCxTCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 323 2 0 128.441183 0.343373 0.02 3.143001 109 57 2654 1476 60 60 0 0 GG 36.319856 121 0 2946 0 KEEP - Bop1 YES MNNG_3 chr15 76285929 76285929 C T exonic Bop1 synonymous SNV NM_013481:c.G720A:p.E240E exonic Bop1 synonymous SNV uc007wkf.1:c.G720A:p.E240E exonic ENSMUSG00000022557 synonymous SNV ENSMUST00000023217:c.G720A:p.E240E 15qD3 NA NA chr15 76285929 CTTxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909058 0.909069 0.999988 75 0 0 78.171797 0.651163 0.02 -0.377043 15 28 417 769 60 60 0 0 CC 8.110159 27 0 753 0 KEEP - Bop1 YES MNNG_3 chr15 76537043 76537043 G A intronic Recql4 NA NA intronic Recql4 NA NA intronic ENSMUSG00000033762 NA NA 15qD3 NA NA chr15 76537043 AGGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 121 0 0 79.644868 0.563636 0.02 1.187801 24 31 681 813 60 60 0 0 GG 15.036959 50 0 1401 0 KEEP - Recql4 YES MNNG_3 chr15 76741851 76741851 C T exonic Zfp647 synonymous SNV NM_172817:c.G1038A:p.E346E exonic Zfp647 synonymous SNV uc007wmu.2:c.G1038A:p.E346E exonic ENSMUSG00000054967 synonymous SNV ENSMUST00000048854:c.G1038A:p.E346E 15qD3 NA NA chr15 76741851 GCAxTCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 134 2 0 119.285855 0.652174 0.02 0.99252 24 45 646 1172 60 60 0 0 CC 15.039305 50 0 1394 0 KEEP - Zfp647 YES MNNG_3 chr15 76881573 76881573 C T exonic Apol6 nonsynonymous SNV NM_001163621:c.C611T:p.T204I exonic Apol6 nonsynonymous SNV uc007wmz.2:c.C611T:p.T204I exonic ENSMUSG00000033576 nonsynonymous SNV ENSMUST00000127957:c.C611T:p.T204I 15qD3 NA NA chr15 76881573 TGAxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 111 0 0 87.818561 0.586207 0.02 1.088838 24 34 667 887 60 60 0 0 CC 13.233745 44 0 1222 0 KEEP + Apol6 YES MNNG_3 chr15 77255078 77255078 G A intronic Apol7b NA NA intronic Apol7b NA NA intronic ENSMUSG00000068252 NA NA 15qE1 "Score=0.973609;Name=No.57805,chr15:77487906" NA chr15 77255078 TGAxTAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 337 4 87 80.217509 0.318182 0.02 2.203885 75 35 2094 934 60 60 0 0 GG 39.404604 131 0 3700 0 KEEP + Apol7b YES MNNG_3 chr15 77548148 77548148 C T exonic "Apol7b,Apol7e" nonsynonymous SNV NM_001024848:c.C515T:p.S172F exonic Apol7e nonsynonymous SNV uc007wnx.1:c.C515T:p.S172F exonic ENSMUSG00000071716 nonsynonymous SNV ENSMUST00000096358:c.C515T:p.S172F 15qE1 "Score=0.973609;Name=No.57805,chr15:77228213" NA chr15 77548148 TGTxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 142 0 22 106.113594 0.609375 0.02 1.018862 25 39 694 1061 55 55 0 0 CC 16.244135 54 0 1542 0 KEEP NA Apol7b YES MNNG_3 chr15 78291758 78291758 C T exonic Tmprss6 nonsynonymous SNV NM_027902:c.G286A:p.V96M exonic Tmprss6 nonsynonymous SNV uc011zvt.1:c.G286A:p.V96M exonic ENSMUSG00000016942 nonsynonymous SNV ENSMUST00000017086:c.G286A:p.V96M 15qE1 NA NA chr15 78291758 GCAxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 142 2 0 100.091535 0.590909 0.02 1.018738 27 39 737 1009 60 60 0 0 CC 15.617923 52 0 1401 0 KEEP - Tmprss6 YES MNNG_3 chr15 79912956 79912956 C T exonic Rpl3 synonymous SNV NM_013762:c.G60A:p.K20K exonic Rpl3 synonymous SNV uc007wvb.2:c.G60A:p.K20K exonic ENSMUSG00000060036 synonymous SNV ENSMUST00000081650:c.G60A:p.K20K 15qE1 NA NA chr15 79912956 GCGxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 148 0 9 76.273089 0.5 0.02 1.054154 31 31 880 802 60 60 0 0 CC 20.456044 68 0 1941 0 KEEP - Rpl3 YES MNNG_3 chr15 79979292 79979292 C T intronic Tab1 NA NA intronic Tab1 NA NA intronic ENSMUSG00000022414 NA NA 15qE1 NA NA chr15 79979292 GTGxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 173 0 0 103.298693 0.540541 0.02 0.833672 34 40 929 1064 60 60 0 0 CC 22.249131 74 0 2050 0 KEEP + Tab1 YES MNNG_3 chr15 80224104 80224104 C T exonic Cacna1i nonsynonymous SNV NM_001044308:c.C5765T:p.P1922L exonic Cacna1i nonsynonymous SNV uc009var.1:c.C5765T:p.P1922L exonic ENSMUSG00000022416 nonsynonymous SNV ENSMUST00000160424:c.C5765T:p.P1922L 15qE1 NA NA chr15 80224104 CACxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 134 1 0 96.219556 0.528571 0.02 0.983902 33 37 911 996 60 60 0 0 CC 12.569054 42 0 1133 0 KEEP + Cacna1i YES MNNG_3 chr15 80838859 80838859 C T exonic Sgsm3 nonsynonymous SNV NM_134091:c.C985T:p.L329F exonic Sgsm3 nonsynonymous SNV uc007wwb.2:c.C985T:p.L329F exonic ENSMUSG00000042303 nonsynonymous SNV ENSMUST00000042506:c.C985T:p.L329F 15qE1 NA NA chr15 80838859 CGCxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 140 2 0 135.054722 0.685714 0.02 1.179723 22 48 623 1311 60 60 0 0 CC 15.943544 53 0 1512 0 KEEP + Sgsm3 YES MNNG_3 chr15 8151213 8151213 G A exonic 2410089E03Rik stopgain SNV NM_001162906:c.G2973A:p.W991X exonic 2410089E03Rik stopgain SNV uc007vem.1:c.G177A:p.W59X exonic ENSMUSG00000039801 stopgain SNV ENSMUST00000110617:c.G2973A:p.W991X 15qA1 NA NA chr15 8151213 GTGxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 152 0 0 117.086438 0.677419 0.02 1.142816 20 42 564 1140 60 60 0 0 GG 19.808133 66 0 1856 0 KEEP + 2410089E03Rik YES MNNG_3 chr15 81740936 81740936 C T exonic Aco2 synonymous SNV NM_080633:c.C1464T:p.A488A exonic Aco2 synonymous SNV uc007wxp.1:c.C1464T:p.A488A exonic ENSMUSG00000022477 synonymous SNV ENSMUST00000023116:c.C1464T:p.A488A 15qE1 NA NA chr15 81740936 TGCxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 44 0 0 27.064918 0.588235 0.02 -0.157841 7 10 201 273 60 60 0 0 CC 5.114294 17 0 491 0 KEEP + Aco2 YES MNNG_3 chr15 82167365 82167365 C T exonic Naga synonymous SNV NM_008669:c.G159A:p.R53R exonic Naga synonymous SNV uc007wyw.2:c.G159A:p.R53R exonic ENSMUSG00000022453 synonymous SNV ENSMUST00000023088:c.G159A:p.R53R 15qE1 NA NA chr15 82167365 GAGxCGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 79 0 0 54.275398 0.6 0.02 -0.306826 14 21 386 545 60 60 0 0 CC 9.323194 31 0 853 0 KEEP - Naga YES MNNG_3 chr15 82222457 82222457 C A exonic Cyp2d11 nonsynonymous SNV NM_001104531:c.G442T:p.G148C exonic Cyp2d11 nonsynonymous SNV uc009vas.1:c.G442T:p.G148C exonic ENSMUSG00000068085 nonsynonymous SNV ENSMUST00000089128:c.G442T:p.G148C 15qE1 "Score=0.919949;Name=No.57813,chr15:82275083" NA chr15 82222457 TGCxCAG C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 139 6 10 49.59048 0.633333 0.02 -0.324376 11 19 304 491 60 60 0 0 CC 22.856044 76 0 2114 0 KEEP - Cyp2d11 NO MNNG_3 chr15 82235704 82235704 C T exonic Cyp2d10 synonymous SNV NM_010005:c.G636A:p.L212L exonic "Cyp2d10,Cyp2d11" synonymous SNV uc007wzf.2:c.G636A:p.L212L exonic ENSMUSG00000014372 synonymous SNV ENSMUST00000072776:c.G636A:p.L212L 15qE1 NA NA chr15 82235704 TTCxAGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 206 2 0 164.58205 0.652174 0.02 0.879791 32 60 889 1618 60 60 0 0 CC 29.46348 98 0 2743 0 KEEP - Cyp2d10 YES MNNG_3 chr15 84600392 84600392 G A intronic Arhgap8 NA NA intronic Arhgap8 NA NA intronic ENSMUSG00000078954 NA NA 15qE2 NA NA chr15 84600392 ACTxTGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 126 0 0 43.575783 0.37037 0.02 0.929902 34 20 954 495 60 60 0 0 GG 18.350686 61 0 1750 0 KEEP + Arhgap8 YES MNNG_3 chr15 85731348 85731348 A C intronic Celsr1 NA NA intronic Celsr1 NA NA intronic ENSMUSG00000016028 NA NA 15qE2 NA NA chr15 85731348 GGAxGCC A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 121 0 0 80.185493 0.52381 0.02 1.045105 30 33 815 834 60 60 0 0 AA 13.834872 46 0 1272 0 KEEP - Celsr1 NO MNNG_3 chr15 85861558 85861558 G A exonic Celsr1 synonymous SNV NM_009886:c.C2643T:p.D881D exonic Celsr1 synonymous SNV uc007xdt.1:c.C2643T:p.D881D exonic ENSMUSG00000016028 synonymous SNV ENSMUST00000016172:c.C2643T:p.D881D 15qE2 NA NA chr15 85861558 ATTxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934361 0.934492 0.999859 67 2 0 31.841028 0.326087 0.02 -0.403278 31 15 847 373 60 60 0 0 GG 5.413608 18 0 498 0 KEEP - Celsr1 YES MNNG_3 chr15 88991229 88991229 G A intronic Plxnb2 NA NA intronic Plxnb2 NA NA intronic ENSMUSG00000036606 NA NA 15qE3 NA NA chr15 88991229 TGGxTGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 108 0 0 43.650007 0.387755 0.02 -0.429598 30 19 820 488 60 60 0 0 GG 12.330325 41 0 1110 0 KEEP - Plxnb2 YES MNNG_3 chr15 89183271 89183271 T C intronic Lmf2 NA NA intronic Lmf2 NA NA intronic ENSMUSG00000022614 NA NA 15qE3 NA NA chr15 89183271 CAGxCTT T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 201 0 0 80.66498 0.37931 0.02 1.022066 54 33 1401 900 60 60 0 0 TT 27.058521 90 0 2442 0 KEEP - Lmf2 NO MNNG_3 chr15 98019707 98019707 G A intronic Olfr288 NA NA intronic Olfr288 NA NA intronic ENSMUSG00000075427 NA NA 15qF1 NA NA chr15 98019707 GGTxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 331 0 7 144.129754 0.366864 0.02 3.310444 107 62 2996 1628 60 60 0 0 GG 34.893323 116 0 3303 0 KEEP - Olfr288 YES MNNG_3 chr15 98350860 98350860 G A intronic Kansl2 NA NA intronic 2310037I24Rik NA NA intronic ENSMUSG00000022992 NA NA 15qF1 NA NA chr15 98350860 CTGxGGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.981947 0.981955 0.999992 108 0 0 47.900222 0.350877 0.02 1.09754 37 20 1026 544 60 60 0 0 GG 11.731173 39 0 1092 0 KEEP - Kansl2 YES MNNG_3 chr15 98688182 98688182 G A exonic Kmt2d synonymous SNV NM_001033276:c.C4422T:p.D1474D exonic Mll2 synonymous SNV uc007xoc.2:c.C4422T:p.D1474D exonic ENSMUSG00000048154 synonymous SNV ENSMUST00000023741:c.C4422T:p.D1474D 15qF1 NA NA chr15 98688182 CAGxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 70 0 0 36.845028 0.46875 0.02 -0.280562 17 15 466 393 60 60 0 0 GG 8.411591 28 0 752 0 KEEP - Kmt2d YES MNNG_3 chr15 98907857 98907857 G A exonic Troap nonsynonymous SNV NM_001162506:c.G473A:p.G158D exonic Troap nonsynonymous SNV uc007xor.2:c.G473A:p.G158D exonic ENSMUSG00000032783 nonsynonymous SNV ENSMUST00000039665:c.G527A:p.G176D 15qF1 NA NA chr15 98907857 GAGxCAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 161 0 0 62.707238 0.325581 0.02 0.746724 58 28 1556 729 60 60 0 0 GG 17.435589 58 0 1585 0 KEEP + Troap YES MNNG_3 chr16 19061835 19061835 G A intergenic "Hira(dist=91434),Olfr164(dist=224052)" NA NA ncRNA_exonic abParts NA NA intergenic "ENSMUSG00000060811(dist=33088),ENSMUSG00000076931(dist=3492)" NA NA 16qA3 NA NA chr16 19061835 AAGxTTA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 104 5 0 27.726054 0.375 0.02 -0.289303 20 12 556 312 60 60 0 0 GG 16.79825 56 0 1539 0 KEEP NA Hira YES MNNG_3 chr16 23613093 23613093 G A exonic Rtp4 synonymous SNV NM_023386:c.G288A:p.Q96Q exonic Rtp4 synonymous SNV uc007ytw.2:c.G288A:p.Q96Q exonic ENSMUSG00000033355 synonymous SNV ENSMUST00000038423:c.G288A:p.Q96Q 16qB1 NA NA chr16 23613093 CCAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 84 0 0 69.982357 0.54 0.02 -0.438366 23 27 651 721 60 60 0 0 GG 9.025131 30 0 866 0 KEEP + Rtp4 YES MNNG_3 chr16 30260154 30260154 G A exonic Cpn2 synonymous SNV NM_027904:c.C814T:p.L272L exonic Cpn2 synonymous SNV uc007ywm.1:c.C814T:p.L272L exonic ENSMUSG00000023176 synonymous SNV ENSMUST00000064856:c.C814T:p.L272L 16qB2 NA NA chr16 30260154 TCAxGCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 29 0 0 6.701422 0.25 0.02 -0.105229 9 3 254 82 60 60 0 0 GG 4.512445 15 0 430 0 KEEP - Cpn2 YES MNNG_3 chr16 34033608 34033608 G A exonic Kalrn synonymous SNV NM_177357:c.C6165T:p.Y2055Y exonic Kalrn synonymous SNV uc007zat.1:c.C1011T:p.Y337Y exonic ENSMUSG00000061751 synonymous SNV ENSMUST00000023522:c.C1011T:p.Y337Y 16qB3 NA NA chr16 34033608 CTGxTAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 39 0 0 10.098767 0.5 0.02 -0.113978 4 4 108 106 60 60 0 0 GG 6.917663 23 0 639 0 KEEP - Kalrn YES MNNG_3 chr16 36913800 36913800 G A exonic Golgb1 nonsynonymous SNV NM_030035:c.G3445A:p.E1149K exonic Golgb1 nonsynonymous SNV uc007zdh.2:c.G3445A:p.E1149K exonic ENSMUSG00000034243 nonsynonymous SNV ENSMUST00000039855:c.G3445A:p.E1149K 16qB3 NA NA chr16 36913800 GGTxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353179 0.353947 0.997832 41 0 0 10.530697 0.263158 0.02 -0.166597 14 5 393 129 60 60 0 0 GG 4.807429 16 0 442 0 KEEP + Golgb1 YES MNNG_3 chr16 38445925 38445925 C G exonic Adprh nonsynonymous SNV NM_007414:c.G934C:p.A312P exonic Adprh nonsynonymous SNV uc007zex.1:c.G934C:p.A312P exonic ENSMUSG00000002844 nonsynonymous SNV ENSMUST00000002923:c.G934C:p.A312P 16qB4 NA NA chr16 38445925 CGGxCGT C G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 99 0 0 13.901123 0.155556 0.02 -0.403283 38 7 1025 190 60 60 0 0 CC 13.232993 44 0 1207 0 KEEP - Adprh NO MNNG_3 chr16 4038152 4038152 A G intronic Dnase1 NA NA exonic Dnase1 nonsynonymous SNV uc007xzi.1:c.A79G:p.M27V intronic ENSMUSG00000005980 NA NA 16qA1 NA NA chr16 4038152 TCTxTGG A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423426 0.423478 0.999879 49 0 0 14.008338 0.285714 0.02 -0.184085 15 6 377 166 60 60 0 0 AA 6.61549 22 0 584 0 KEEP + Dnase1 NO MNNG_3 chr16 4040353 4040353 C T intronic Trap1 NA NA intronic Trap1 NA NA intronic ENSMUSG00000005981 NA NA 16qA1 NA NA chr16 4040353 AGTxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 247 0 0 116.729265 0.419643 0.02 2.203836 65 47 1828 1274 60 60 0 0 CC 30.934542 103 0 2865 0 KEEP - Trap1 YES MNNG_3 chr16 4087994 4087994 G A intronic Crebbp NA NA intronic Crebbp NA NA intronic ENSMUSG00000022521 NA NA 16qA1 NA NA chr16 4087994 CGAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457467 0.457757 0.999366 40 0 0 28.621996 0.5 0.02 -0.192916 11 11 311 300 60 60 0 0 GG 5.10683 17 0 473 0 KEEP - Crebbp YES MNNG_3 chr16 44487788 44487788 G A exonic Boc nonsynonymous SNV NM_172506:c.C2816T:p.A939V exonic Boc nonsynonymous SNV uc007zhl.1:c.C2816T:p.A939V exonic ENSMUSG00000022687 nonsynonymous SNV ENSMUST00000023370:c.C2816T:p.A939V 16qB4 NA NA chr16 44487788 GTAxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 83 0 0 48.943856 0.527778 0.02 -0.315661 17 19 480 507 60 60 0 0 GG 11.129959 37 0 1049 0 KEEP - Boc YES MNNG_3 chr16 45723071 45723071 G A exonic Tagln3 nonsynonymous SNV NM_019754:c.C320T:p.T107I exonic Tagln3 nonsynonymous SNV uc007ziw.1:c.C320T:p.T107I exonic ENSMUSG00000022658 nonsynonymous SNV ENSMUST00000096057:c.C320T:p.T107I 16qB5 NA NA chr16 45723071 GTGxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.99986 34 0 0 12.144585 0.416667 0.02 -0.10522 7 5 195 133 60 60 0 0 GG 5.701995 19 0 502 0 KEEP - Tagln3 YES MNNG_3 chr16 46049763 46049763 G A intronic Cd96 NA NA intronic Cd96 NA NA intronic ENSMUSG00000022657 NA NA 16qB5 NA NA chr16 46049763 TGTxACT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 86 0 0 18.353607 0.380952 0.02 -0.315645 13 8 368 206 60 60 0 0 GG 10.228367 34 0 978 0 KEEP - Cd96 YES MNNG_3 chr16 5070697 5070697 G A intronic Ubn1 NA NA intronic Ubn1 NA NA intronic ENSMUSG00000039473 NA NA 16qA1 NA NA chr16 5070697 ATGxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 76 0 0 26.190715 0.354839 0.02 -0.271835 20 11 563 297 60 60 0 0 GG 11.1297 37 0 1040 0 KEEP + Ubn1 YES MNNG_3 chr16 5089490 5089490 A T exonic Ppl synonymous SNV NM_008909:c.T3033A:p.L1011L exonic Ppl synonymous SNV uc007ybt.1:c.T3033A:p.L1011L exonic ENSMUSG00000039457 synonymous SNV ENSMUST00000035672:c.T3033A:p.L1011L 16qA1 NA NA chr16 5089490 CCGxAGC A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 194 1 0 68.162236 0.394737 0.02 0.91365 46 30 1233 760 60 60 0 0 AA 29.040678 97 0 2575 0 KEEP - Ppl NO MNNG_3 chr16 58889545 58889545 C A exonic Olfr178 nonsynonymous SNV NM_146997:c.G500T:p.R167M exonic Olfr178 nonsynonymous SNV uc007zoi.1:c.G500T:p.R167M exonic ENSMUSG00000044029 nonsynonymous SNV ENSMUST00000058564:c.G500T:p.R167M 16qC1.2 NA NA chr16 58889545 AACxTTA C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 391 0 1 110.41304 0.335616 0.02 1.817208 97 49 2723 1275 60 60 0 0 CC 57.152905 190 0 5371 0 KEEP - Olfr178 NO MNNG_3 chr16 59085869 59085869 A C exonic Olfr191 nonsynonymous SNV NM_001011807:c.T439G:p.L147V exonic Olfr191 nonsynonymous SNV uc007zop.1:c.T439G:p.L147V exonic ENSMUSG00000057533 nonsynonymous SNV ENSMUST00000078517:c.T439G:p.L147V 16qC1.3 "Score=0.911706;Name=No.61928,chr16:59086942" NA chr16 59085869 ACAxTGT A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 144 0 0 64.071767 0.403226 0.02 1.134087 37 25 974 703 60 60 0 0 AA 18.647312 62 0 1701 0 KEEP - Olfr191 NO MNNG_3 chr16 59491673 59491673 A T exonic Mina nonsynonymous SNV NM_025910:c.A1346T:p.K449M exonic Mina nonsynonymous SNV uc007zph.2:c.A1346T:p.K449M exonic ENSMUSG00000022724 nonsynonymous SNV ENSMUST00000023407:c.A1346T:p.K449M 16qC1.3 NA NA chr16 59491673 AAAxGGA A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 121 0 0 30.991011 0.263158 0.02 1.097761 42 15 1151 381 60 60 1 0 AA 13.835744 46 0 1280 0 KEEP + Mina NO MNNG_3 chr16 76292677 76292677 C T exonic Nrip1 nonsynonymous SNV NM_173440:c.G2236A:p.A746T exonic Nrip1 nonsynonymous SNV uc007zrx.1:c.G2236A:p.A746T exonic ENSMUSG00000048490 nonsynonymous SNV ENSMUST00000054178:c.G2236A:p.A746T 16qC3.1 NA NA chr16 76292677 CAGxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 96 0 0 37.507745 0.363636 0.02 -0.385733 28 16 769 424 60 60 0 0 CC 11.728626 39 0 1067 0 KEEP - Nrip1 YES MNNG_3 chr16 78325539 78325539 C T exonic Cxadr nonsynonymous SNV NM_001025192:c.C181T:p.P61S exonic Cxadr nonsynonymous SNV uc007zsm.1:c.C181T:p.P61S exonic ENSMUSG00000022865 nonsynonymous SNV ENSMUST00000023572:c.C181T:p.P61S 16qC3.1 NA NA chr16 78325539 TCCxCGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457751 0.457757 0.999988 59 0 0 45.026685 0.727273 0.02 -0.192899 6 16 167 430 60 60 0 0 CC 8.121637 27 0 758 0 KEEP + Cxadr YES MNNG_3 chr16 78335067 78335067 C T exonic Cxadr nonsynonymous SNV NM_001025192:c.C695T:p.P232L exonic Cxadr nonsynonymous SNV uc007zsn.1:c.C695T:p.P232L exonic ENSMUSG00000022865 nonsynonymous SNV ENSMUST00000023572:c.C695T:p.P232L 16qC3.1 NA NA chr16 78335067 TAGxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 185 3 0 72.520609 0.461538 0.02 1.027562 35 30 930 777 60 60 0 0 CC 24.958322 83 0 2245 0 KEEP + Cxadr YES MNNG_3 chr16 87923504 87923504 C T exonic Grik1 nonsynonymous SNV NM_010348:c.G2129A:p.S710N exonic Grik1 nonsynonymous SNV uc007zuu.1:c.G17A:p.S6N exonic ENSMUSG00000022935 nonsynonymous SNV ENSMUST00000023652:c.G2018A:p.S673N 16qC3.3 NA NA chr16 87923504 CTGxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 201 0 0 85.985249 0.460526 0.02 1.029177 41 35 1144 921 60 60 0 0 CC 27.074301 90 0 2575 0 KEEP - Grik1 YES MNNG_3 chr16 88885044 88885044 C T UTR3 Krtap19-4 NA NA UTR3 Krtap16-4 NA NA UTR3 ENSMUSG00000043982 NA NA 16qC3.3 NA NA chr16 88885044 TTCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 73 0 0 30.681991 0.413793 0.02 -0.254306 17 12 476 335 60 60 0 0 CC 11.127005 37 0 1019 0 KEEP - Krtap19-4 YES MNNG_3 chr16 90226397 90226397 C T exonic Sod1 synonymous SNV NM_011434:c.C360T:p.V120V exonic Sod1 synonymous SNV uc007zvz.1:c.C360T:p.V120V exonic ENSMUSG00000022982 synonymous SNV ENSMUST00000023707:c.C360T:p.V120V 16qC3.3 NA NA chr16 90226397 GGTxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 151 1 0 57.863897 0.442308 0.02 1.239259 29 23 817 624 60 60 0 0 CC 22.260053 74 0 2102 0 KEEP + Sod1 YES MNNG_3 chr16 91782436 91782436 C T UTR5 Itsn1 NA NA UTR5 Itsn1 NA NA UTR5 ENSMUSG00000022957 NA NA 16qC4 NA NA chr16 91782436 GAAxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 122 0 0 39.155739 0.377778 0.02 -0.403125 28 17 759 440 60 60 0 0 CC 16.843311 56 0 1546 0 KEEP + Itsn1 YES MNNG_3 chr16 94605884 94605884 C T intronic Ttc3 NA NA intronic Ttc3 NA NA intronic ENSMUSG00000040785 NA NA 16qC4 NA NA chr16 94605884 GTTxCGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.999859 50 0 0 51.208232 0.655172 0.02 -0.253958 10 19 276 503 60 60 0 0 CC 5.414885 18 0 515 0 KEEP + Ttc3 YES MNNG_3 chr17 13244133 13244133 C T downstream Gpr31b NA NA downstream Gpr31c NA NA downstream ENSMUSG00000071311 NA NA 17qA1 "Score=0.988245;Name=No.65318,chr17:13509436" NA chr17 13244133 TTAxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641303 0.641347 0.999931 66 0 8 7.326928 0.142857 0.02 -0.245507 24 4 657 104 38 40 0 0 CC 9.32271 31 0 844 0 KEEP - Gpr31b YES MNNG_3 chr17 13419689 13419689 C T exonic Smok2a nonsynonymous SNV NM_013741:c.C1286T:p.P429L exonic Smok2a nonsynonymous SNV uc012akl.1:c.C1286T:p.P429L exonic ENSMUSG00000073458 nonsynonymous SNV ENSMUST00000080647:c.C1286T:p.P429L 17qA1 "Score=0.958398;Name=No.65325,chr17:13708775" NA chr17 13419689 TTCxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 291 0 0 131.564086 0.515464 0.02 0.835966 47 50 1298 1369 60 60 0 0 CC 47.207864 157 0 4360 0 KEEP + Smok2a YES MNNG_3 chr17 13549392 13549392 G A exonic Tcp10c synonymous SNV NM_001167578:c.G366A:p.S122S exonic "Gm9880,Tcp10c" synonymous SNV uc008amh.2:c.G291A:p.S97S exonic ENSMUSG00000052469 synonymous SNV ENSMUST00000080075:c.G366A:p.S122S 17qA1 "Score=0.988245;Name=No.65318,chr17:13215505" NA chr17 13549392 CTCxCCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 43 0 0 7.502083 0.25 0.02 -0.140257 12 4 327 95 60 20 0 0 GG 7.490966 25 0 649 0 KEEP + Tcp10c YES MNNG_3 chr17 13567644 13567644 G T exonic Tcp10c nonsynonymous SNV NM_001167578:c.G1221T:p.E407D exonic "Gm9880,Tcp10a,Tcp10c" nonsynonymous SNV uc008amh.2:c.G1086T:p.E362D exonic ENSMUSG00000052469 nonsynonymous SNV ENSMUST00000097403:c.G1221T:p.E407D 17qA1 "Score=0.988245;Name=No.65318,chr17:13215505" NA chr17 13567644 AGAxACG G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 110 1 25 24.793422 0.44 0.02 -0.219173 14 11 400 270 46 43 0 0 GG 17.445681 58 0 1642 0 KEEP + Tcp10c NO MNNG_3 chr17 13851030 13851030 C T intergenic "2700054A10Rik(dist=104070),Tcte2(dist=2413)" NA NA exonic Tcte2 nonsynonymous SNV uc008amn.1:c.G323A:p.G108E exonic ENSMUSG00000038347 nonsynonymous SNV ENSMUST00000143162:c.G323A:p.G108E 17qA1 NA NA chr17 13851030 CTTxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693584 0.693668 0.999879 60 1 0 38.828329 0.517241 0.02 -0.263063 14 15 398 404 60 60 0 0 CC 6.618303 22 0 631 0 KEEP NA 2700054A10Rik YES MNNG_3 chr17 14336244 14336244 C T exonic Dact2 synonymous SNV NM_172826:c.G258A:p.L86L exonic Dact2 synonymous SNV uc008amv.2:c.G258A:p.L86L exonic ENSMUSG00000048826 synonymous SNV ENSMUST00000053218:c.G258A:p.L86L 17qA2 NA NA chr17 14336244 GTCxAAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 37 0 0 17.221489 0.5 0.02 -0.122747 7 7 197 181 60 60 0 0 CC 5.715681 19 0 543 0 KEEP - Dact2 YES MNNG_3 chr17 18030414 18030414 C T exonic Fpr2 nonsynonymous SNV NM_008039:c.C707T:p.S236F exonic Fpr2 nonsynonymous SNV uc008apu.1:c.C707T:p.S236F exonic ENSMUSG00000052270 nonsynonymous SNV ENSMUST00000064068:c.C707T:p.S236F 17qA3.2 NA NA chr17 18030414 ATTxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 248 2 0 170.000287 0.577982 0.02 2.336784 46 63 1291 1722 60 60 0 0 CC 33.075913 110 0 3055 0 KEEP + Fpr2 YES MNNG_3 chr17 18831773 18831773 C T intergenic "Vmn2r96(dist=96652),Vmn2r97(dist=219513)" NA NA intergenic "Vmn2r96(dist=96652),Vmn2r97(dist=219513)" NA NA intergenic "ENSMUSG00000091679(dist=96652),ENSMUSG00000091491(dist=219513)" NA NA 17qA3.2 "Score=0.904979;Name=No.65453,chr17:18717391" NA chr17 18831773 GATxATG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 213 0 0 134.563307 0.535354 0.02 0.729333 46 53 1300 1390 60 60 0 0 CC 28.871312 96 0 2739 0 KEEP NA Vmn2r96 YES MNNG_3 chr17 20512112 20512112 C T exonic Vmn2r107 synonymous SNV NM_001104569:c.C1962T:p.T654T exonic Vmn2r107 synonymous SNV uc008apz.2:c.C1962T:p.T654T exonic ENSMUSG00000056910 synonymous SNV ENSMUST00000042090:c.C1962T:p.T654T 17qA3.2 NA NA chr17 20512112 CACxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 541 1 0 206.046013 0.462857 0.02 3.231287 94 81 2643 2199 60 60 0 0 CC 95.011338 316 0 8867 0 KEEP + Vmn2r107 YES MNNG_3 chr17 23608237 23608237 C G exonic Vmn2r117 nonsynonymous SNV NM_001104581:c.G1561C:p.G521R exonic Vmn2r117 nonsynonymous SNV uc009vbu.1:c.G1561C:p.G521R exonic ENSMUSG00000091407 nonsynonymous SNV ENSMUST00000171996:c.G1561C:p.G521R 17qA3.3 "Score=0.971132;Name=No.65604,chr17:23582224" NA chr17 23608237 GACxACA C G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 641 21 35 11.827604 0.053571 0.02 4.920463 159 9 4489 227 60 23 0 0 CC 96.532912 321 0 9137 0 KEEP - Vmn2r117 NO MNNG_3 chr17 24357454 24357454 C T intronic 1600002H07Rik NA NA ncRNA_exonic "AK017296,BC028777" NA NA ncRNA_exonic ENSMUSG00000085185 NA NA 17qA3.3 NA NA chr17 24357454 GGTxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 88 2 0 39.040819 0.457143 0.02 -0.306812 19 16 536 419 60 60 0 0 CC 12.634076 42 0 1189 0 KEEP - 1600002H07Rik YES MNNG_3 chr17 24715415 24715415 C T exonic Pkd1 nonsynonymous SNV NM_013630:c.C7783T:p.L2595F exonic Pkd1 nonsynonymous SNV uc008awv.1:c.C7783T:p.L2595F exonic ENSMUSG00000032855 nonsynonymous SNV ENSMUST00000035565:c.C7783T:p.L2595F 17qA3.3 NA NA chr17 24715415 GGGxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 102 0 0 56.290514 0.536585 0.02 -0.368261 19 22 541 581 60 60 0 0 CC 13.535526 45 0 1269 0 KEEP + Pkd1 YES MNNG_3 chr17 24859089 24859089 C T exonic Ndufb10 synonymous SNV NM_026684:c.G504A:p.K168K exonic Ndufb10 synonymous SNV uc008ayd.1:c.G504A:p.K168K exonic ENSMUSG00000040048 synonymous SNV ENSMUST00000045602:c.G504A:p.K168K 17qA3.3 NA NA chr17 24859089 AGCxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 143 0 0 58.98608 0.46 0.02 -0.438439 27 23 754 630 60 60 0 0 CC 20.443 68 0 1913 0 KEEP - Ndufb10 YES MNNG_3 chr17 24987544 24987544 C T exonic Hagh synonymous SNV NM_024284:c.C7T:p.L3L exonic Hagh synonymous SNV uc008aym.2:c.C7T:p.L3L exonic ENSMUSG00000024158 synonymous SNV ENSMUST00000118788:c.C7T:p.L3L 17qA3.3 NA NA chr17 24987544 GTGxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.321674 0.322807 0.99649 40 0 0 28.658394 0.611111 0.02 -0.157258 7 11 173 286 60 60 0 0 CC 4.509959 15 0 406 0 KEEP + Hagh YES MNNG_3 chr17 25027850 25027850 G A exonic Spsb3 nonsynonymous SNV NM_001163750:c.G1003A:p.D335N exonic Spsb3 nonsynonymous SNV uc008ayv.1:c.G541A:p.D181N exonic ENSMUSG00000024160 nonsynonymous SNV ENSMUST00000024976:c.G670A:p.D224N 17qA3.3 NA NA chr17 25027850 AGGxATG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959858 0.959859 0.999999 88 0 0 57.013525 0.46 0.02 -0.43766 27 23 723 610 60 60 0 0 GG 10.418698 35 0 930 0 KEEP + Spsb3 YES MNNG_3 chr17 25285945 25285945 C T intronic Clcn7 NA NA intronic Clcn7 NA NA intronic ENSMUSG00000036636 NA NA 17qA3.3 NA NA chr17 25285945 CAGxAGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 89 1 0 38.750316 0.447368 0.02 -0.359381 21 17 574 420 60 60 0 0 CC 11.407959 38 0 1021 0 KEEP + Clcn7 YES MNNG_3 chr17 25569932 25569932 T A exonic Cacna1h nonsynonymous SNV NM_001163691:c.A182T:p.D61V exonic Cacna1h nonsynonymous SNV uc008bav.2:c.A182T:p.D61V exonic ENSMUSG00000024112 nonsynonymous SNV ENSMUST00000092775:c.A182T:p.D61V 17qA3.3 NA NA chr17 25569932 AGGxCCG T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58285 0.58293 0.999863 54 0 0 12.582567 0.24 0.02 -0.22787 19 6 492 157 60 60 0 0 TT 6.007847 20 0 533 0 KEEP - Cacna1h NO MNNG_3 chr17 25919020 25919020 C T exonic Narfl stopgain SNV NM_026238:c.C1252T:p.Q418X exonic Narfl stopgain SNV uc008bbq.2:c.C1252T:p.Q418X exonic ENSMUSG00000002280 stopgain SNV ENSMUST00000002350:c.C1252T:p.Q418X 17qA3.3 NA NA chr17 25919020 CTTxAGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 129 0 0 66.025732 0.482143 0.02 1.097575 29 27 826 700 60 60 0 0 CC 16.545927 55 0 1582 0 KEEP + Narfl YES MNNG_3 chr17 25966160 25966160 C T intronic Jmjd8 NA NA intronic Jmjd8 NA NA ncRNA_intronic ENSMUSG00000091321 NA NA 17qA3.3 NA NA chr17 25966160 TGAxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 125 0 0 58.638977 0.396825 0.02 1.036277 38 25 1057 651 60 60 0 0 CC 16.242995 54 0 1520 0 KEEP + Jmjd8 YES MNNG_3 chr17 26347623 26347623 C T exonic Rgs11 nonsynonymous SNV NM_001081069:c.C1349T:p.T450I exonic Rgs11 nonsynonymous SNV uc008bdu.1:c.C230T:p.T77I exonic ENSMUSG00000024186 nonsynonymous SNV ENSMUST00000025020:c.C1349T:p.T450I 17qA3.3 NA NA chr17 26347623 CTAxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 255 2 0 105.265138 0.401786 0.02 2.009574 67 45 1851 1166 60 60 0 0 CC 31.570996 105 0 2881 0 KEEP + Rgs11 YES MNNG_3 chr17 27171667 27171667 C T intronic Ggnbp1 NA NA intronic Ggnbp1 NA NA intronic ENSMUSG00000048731 NA NA 17qA3.3 NA NA chr17 27171667 ACCxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 43 0 0 22.155057 0.5 0.02 -0.157646 9 9 250 233 60 60 0 0 CC 6.015525 20 0 553 0 KEEP + Ggnbp1 YES MNNG_3 chr17 27480486 27480486 C T intergenic "Lemd2(dist=139103),Grm4(dist=78847)" NA NA exonic Gm10505 nonsynonymous SNV uc012anv.1:c.C211T:p.L71F ncRNA_exonic ENSMUSG00000073430 NA NA 17qA3.3 NA NA chr17 27480486 CCTxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 221 0 0 50.888363 0.267442 0.02 0.843231 63 23 1782 616 60 60 0 0 CC 31.58674 105 0 3002 0 KEEP NA Lemd2 YES MNNG_3 chr17 28013651 28013651 C T exonic Uhrf1bp1 synonymous SNV NM_001080769:c.C88T:p.L30L exonic Uhrf1bp1 synonymous SNV uc008bpt.1:c.C88T:p.L30L exonic ENSMUSG00000039512 synonymous SNV ENSMUST00000114849:c.C88T:p.L30L 17qA3.3 NA NA chr17 28013651 ACTxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 63 0 0 37.09767 0.5 0.02 -0.262811 15 15 424 390 60 60 0 0 CC 8.423234 28 0 803 0 KEEP + Uhrf1bp1 YES MNNG_3 chr17 28191230 28191230 C T intronic Anks1 NA NA intronic Anks1 NA NA intronic ENSMUSG00000024219 NA NA 17qA3.3 NA NA chr17 28191230 ATTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 140 0 0 35.66086 0.365854 0.02 -0.359502 26 15 727 402 60 60 0 0 CC 23.764116 79 0 2250 0 KEEP + Anks1 YES MNNG_3 chr17 29020447 29020447 C T exonic Pnpla1 stopgain SNV NM_001034885:c.C1492T:p.Q498X exonic Pnpla1 stopgain SNV uc008brt.1:c.C1492T:p.Q498X exonic ENSMUSG00000043286 stopgain SNV ENSMUST00000056866:c.C1492T:p.Q498X 17qA3.3 NA NA chr17 29020447 TCAxAGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 252 1 0 86.620481 0.436782 0.02 0.640644 49 38 1358 944 60 60 0 0 CC 35.193632 117 0 3297 0 KEEP + Pnpla1 YES MNNG_3 chr17 29979295 29979295 C T exonic Mdga1 nonsynonymous SNV NM_001081160:c.G1666A:p.V556M exonic Mdga1 nonsynonymous SNV uc008bto.1:c.G1666A:p.V556M exonic ENSMUSG00000043557 nonsynonymous SNV ENSMUST00000073556:c.G1666A:p.V556M 17qA3.3 NA NA chr17 29979295 GCAxAGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.99986 43 1 0 11.12143 0.357143 0.02 -0.12275 9 5 254 127 60 60 0 0 CC 5.714566 19 0 527 0 KEEP - Mdga1 YES MNNG_3 chr17 30854872 30854872 A T intronic Dnah8 NA NA intronic Dnahc8 NA NA intronic ENSMUSG00000033826 NA NA 17qA3.3 NA NA chr17 30854872 GTGxGCC A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 163 0 26 13.20099 0.155556 0.02 -0.403303 38 7 1034 183 60 60 0 0 AA 23.157899 77 0 2145 0 KEEP + Dnah8 NO MNNG_3 chr17 30876640 30876640 C T exonic Dnah8 synonymous SNV NM_013811:c.C6510T:p.F2170F exonic Dnahc8 synonymous SNV uc008bua.1:c.C6510T:p.F2170F exonic ENSMUSG00000033826 synonymous SNV ENSMUST00000035963:c.C6510T:p.F2170F 17qA3.3 NA NA chr17 30876640 GTTxATC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 185 0 0 41.18503 0.229885 0.02 0.834894 67 20 1876 520 60 60 0 0 CC 24.366798 81 0 2322 0 KEEP + Dnah8 YES MNNG_3 chr17 30906794 30906794 C T exonic Dnah8 synonymous SNV NM_013811:c.C9792T:p.S3264S exonic Dnahc8 synonymous SNV uc008bua.1:c.C9792T:p.S3264S exonic ENSMUSG00000033826 synonymous SNV ENSMUST00000035963:c.C9792T:p.S3264S 17qA3.3 NA NA chr17 30906794 AAGxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 147 3 0 12.829639 0.122807 0.02 1.000155 50 7 1421 187 60 60 0 0 CC 20.147213 67 0 1887 0 KEEP + Dnah8 YES MNNG_3 chr17 31640574 31640574 C T exonic Wdr4 nonsynonymous SNV NM_021322:c.G469A:p.A157T exonic Wdr4 nonsynonymous SNV uc008bvc.2:c.G469A:p.A157T exonic ENSMUSG00000024037 nonsynonymous SNV ENSMUST00000024837:c.G340A:p.A114T 17qB1 NA NA chr17 31640574 AGGxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 117 0 0 61.320669 0.42623 0.02 0.965338 35 26 961 670 60 60 0 0 CC 12.934624 43 0 1216 0 KEEP - Wdr4 YES MNNG_3 chr17 32270400 32270400 G C exonic Notch3 nonsynonymous SNV NM_008716:c.C5603G:p.A1868G exonic Notch3 nonsynonymous SNV uc008bvx.1:c.C5603G:p.A1868G exonic ENSMUSG00000038146 nonsynonymous SNV ENSMUST00000087723:c.C5603G:p.A1868G 17qB1 "Score=0.902817;Name=No.8173,chr10:77949798" NA chr17 32270400 TGGxCGT G C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999998 64 0 0 17.859847 0.347826 0.02 -0.201613 15 8 414 205 60 60 0 0 GG 10.225397 34 0 927 0 KEEP - Notch3 NO MNNG_3 chr17 32270443 32270443 C T exonic Notch3 nonsynonymous SNV NM_008716:c.G5560A:p.D1854N exonic Notch3 nonsynonymous SNV uc008bvx.1:c.G5560A:p.D1854N exonic ENSMUSG00000038146 nonsynonymous SNV ENSMUST00000087723:c.G5560A:p.D1854N 17qB1 "Score=0.902817;Name=No.8173,chr10:77949798" NA chr17 32270443 CATxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 67 0 0 30.26843 0.444444 0.02 -0.236719 15 12 403 326 60 60 0 0 CC 9.3126 31 0 816 0 KEEP - Notch3 YES MNNG_3 chr17 32358804 32358804 C T intronic Brd4 NA NA intronic Brd4 NA NA intronic ENSMUSG00000024002 NA NA 17qB1 NA NA chr17 32358804 GGGxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 91 1 0 55.950537 0.534884 0.02 -0.376857 20 23 546 579 60 60 0 0 CC 11.729654 39 0 1068 0 KEEP - Brd4 YES MNNG_3 chr17 32655028 32655028 C T intronic Cyp4f17 NA NA intronic Cyp4f17 NA NA intronic ENSMUSG00000091586 NA NA 17qB1 NA NA chr17 32655028 TGTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38736 0.387407 0.999879 47 0 0 25.64771 0.5 0.02 -0.175355 10 10 272 269 60 60 0 0 CC 6.610689 22 0 610 0 KEEP + Cyp4f17 YES MNNG_3 chr17 33275548 33275548 C T exonic Morc2b nonsynonymous SNV NM_177719:c.G194A:p.C65Y exonic Morc2b nonsynonymous SNV uc008byc.2:c.G194A:p.C65Y exonic ENSMUSG00000048602 nonsynonymous SNV ENSMUST00000087649:c.G194A:p.C65Y 17qB1 NA NA chr17 33275548 AAAxAAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 106 2 0 53.359116 0.52381 0.02 -0.368209 20 22 558 555 60 60 0 0 CC 15.641505 52 0 1464 0 KEEP - Morc2b YES MNNG_3 chr17 34085231 34085231 C T exonic Wdr46 synonymous SNV NM_020603:c.C1179T:p.P393P exonic Wdr46 synonymous SNV uc008cai.1:c.C1179T:p.P393P exonic ENSMUSG00000024312 synonymous SNV ENSMUST00000025170:c.C1179T:p.P393P 17qB1 NA NA chr17 34085231 GCCxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 170 0 0 63.52972 0.462963 0.02 1.106309 29 25 807 678 60 60 0 0 CC 27.035576 90 0 2479 0 KEEP + Wdr46 YES MNNG_3 chr17 34094916 34094916 C T intronic Vps52 NA NA intronic Vps52 NA NA intronic ENSMUSG00000024319 NA NA 17qB1 NA NA chr17 34094916 CTCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 77 0 0 56.692147 0.583333 0.02 -0.31567 15 21 419 573 60 60 0 0 CC 9.926108 33 0 922 0 KEEP + Vps52 YES MNNG_3 chr17 34169870 34169870 C T exonic Rxrb nonsynonymous SNV NM_001205214:c.C325T:p.P109S exonic Rxrb nonsynonymous SNV uc008cax.1:c.C325T:p.P109S exonic ENSMUSG00000039656 nonsynonymous SNV ENSMUST00000044858:c.C325T:p.P109S 17qB1 NA NA chr17 34169870 CCAxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 253 3 0 63.947468 0.595745 0.02 1.020021 19 28 499 645 60 60 0 1 CC 47.955727 160 0 4067 0 KEEP + Rxrb YES MNNG_3 chr17 34197402 34197402 C T intronic Col11a2 NA NA intronic Col11a2 NA NA intronic ENSMUSG00000024330 NA NA 17qB1 NA NA chr17 34197402 TAAxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 119 0 0 66.718693 0.490909 0.02 1.106409 28 27 757 704 60 60 0 0 CC 15.338945 51 0 1403 0 KEEP + Col11a2 YES MNNG_3 chr17 34287748 34287748 C T exonic H2-DMb2 synonymous SNV NM_010388:c.C753T:p.L251L exonic H2-DMb2 synonymous SNV uc008cbn.1:c.C753T:p.L251L exonic ENSMUSG00000037548 synonymous SNV ENSMUST00000041982:c.C753T:p.L251L 17qB1 "Score=0.933103;Name=No.65641,chr17:34288852" NA chr17 34287748 TCTxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 178 0 0 85.567721 0.5 0.02 1.116525 33 33 913 897 60 60 0 1 CC 23.74423 79 0 2193 0 KEEP + H2-DMb2 YES MNNG_3 chr17 34345756 34345756 C T exonic Tap2 synonymous SNV NM_011530:c.C663T:p.N221N exonic Tap2 synonymous SNV uc008cbx.2:c.C663T:p.N221N exonic ENSMUSG00000024339 synonymous SNV ENSMUST00000025197:c.C663T:p.N221N 17qB1 NA NA chr17 34345756 CAAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 203 0 0 84.610951 0.507246 0.02 0.992465 34 35 917 887 60 60 0 0 CC 32.465632 108 0 2927 0 KEEP + Tap2 YES MNNG_3 chr17 34349180 34349180 G T exonic Tap2 nonsynonymous SNV NM_011530:c.G1146T:p.M382I exonic Tap2 nonsynonymous SNV uc008cbx.2:c.G1146T:p.M382I exonic "ENSMUSG00000024339,ENSMUSG00000081512" nonsynonymous SNV ENSMUST00000025197:c.G1146T:p.M382I 17qB1 NA NA chr17 34349180 GATxGCC G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 247 0 0 110.002027 0.44898 0.02 0.73805 54 44 1505 1183 60 60 0 0 GG 30.930914 103 0 2888 0 KEEP + Tap2 NO MNNG_3 chr17 34557335 34557335 C T exonic BC051142 nonsynonymous SNV NM_001163855:c.C137T:p.A46V exonic BC051142 nonsynonymous SNV uc008ccp.2:c.C146T:p.A49V exonic ENSMUSG00000057246 nonsynonymous SNV ENSMUST00000114173:c.C146T:p.A49V 17qB1 NA NA chr17 34557335 GTGxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 117 0 0 41.118232 0.346154 0.02 1.141411 34 18 944 471 60 60 0 0 CC 15.01785 50 0 1369 0 KEEP + BC051142 YES MNNG_3 chr17 34652311 34652311 C T exonic Btnl6 nonsynonymous SNV NM_030747:c.G421A:p.E141K exonic Btnl6 nonsynonymous SNV uc012aqb.1:c.G421A:p.E141K exonic ENSMUSG00000058762 nonsynonymous SNV ENSMUST00000075483:c.G421A:p.E141K 17qB1 "Score=0.897227;Name=No.65646,chr17:34677306" NA chr17 34652311 GTTxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 158 2 0 60.671601 0.428571 0.02 1.205144 32 24 882 658 60 60 0 0 CC 25.269557 84 0 2403 0 KEEP - Btnl6 YES MNNG_3 chr17 34724045 34724045 C T intronic Notch4 NA NA intronic Notch4 NA NA intronic ENSMUSG00000015468 NA NA 17qB1 NA NA chr17 34724045 GCTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 136 0 0 79.564131 0.630435 0.02 -0.403352 17 29 479 789 60 60 0 0 CC 20.152965 67 0 1884 0 KEEP + Notch4 YES MNNG_3 chr17 34946576 34946576 C T intronic C4a NA NA intronic "C4a,C4b" NA NA ncRNA_exonic ENSMUSG00000015451 NA NA 17qB1 "Score=0.953125;Name=No.65650,chr17:34847295" NA chr17 34946576 GAGxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353179 0.353947 0.997832 39 0 0 21.882474 0.473684 0.02 -0.166564 10 9 267 233 60 60 0 0 CC 4.812348 16 0 445 0 KEEP - C4a YES MNNG_3 chr17 35048302 35048302 C T intronic Ehmt2 NA NA intronic Ehmt2 NA NA intronic ENSMUSG00000013787 NA NA 17qB1 NA NA chr17 35048302 GCAxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 116 2 0 30.275344 0.419355 0.02 -0.270779 18 13 461 332 60 60 0 0 CC 17.587321 63 1 1702 12 KEEP + Ehmt2 YES MNNG_3 chr17 35219868 35219868 C T exonic Ly6g6f nonsynonymous SNV NM_001163192:c.G554A:p.C185Y exonic Ly6g6f nonsynonymous SNV uc012aqz.1:c.G554A:p.C185Y exonic ENSMUSG00000034923 nonsynonymous SNV ENSMUST00000038507:c.G554A:p.C185Y 17qB1 NA NA chr17 35219868 GGAxACA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 102 1 0 38.652654 0.447368 0.02 -0.333115 21 17 577 419 60 60 0 0 CC 15.038485 50 0 1381 0 KEEP - Ly6g6f YES MNNG_3 chr17 35580059 35580059 C T intronic "H2-Q7,H2-Q9" NA NA intronic "H2-Q7,H2-Q9" NA NA intronic ENSMUSG00000060550 NA NA 17qB1 "Score=0.969905;Name=No.65659,chr17:35499753" NA chr17 35580059 TACxAAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 715 0 10 88.921003 0.156667 0.02 7.042806 253 47 7035 1230 60 60 0 0 CC 115.787517 385 0 10836 0 KEEP NA H2-Q7 YES MNNG_3 chr17 36040931 36040931 C T intronic Atat1 NA NA ncRNA_UTR3 Atat1 NA NA exonic ENSMUSG00000024426 nonsynonymous SNV ENSMUST00000051462:c.G566A:p.S189N 17qB1 NA NA chr17 36040931 CTGxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.99986 38 1 0 20.197226 0.5 0.02 -0.140286 8 8 221 212 60 60 0 0 CC 5.715345 19 0 536 0 KEEP - Atat1 YES MNNG_3 chr17 36045845 36045845 C T exonic Atat1 nonsynonymous SNV NM_001142744:c.G388A:p.V130M exonic Atat1 nonsynonymous SNV uc008cja.2:c.G388A:p.V130M exonic ENSMUSG00000024426 nonsynonymous SNV ENSMUST00000141132:c.G259A:p.V87M 17qB1 NA NA chr17 36045845 GCAxCGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 544 8 0 153.351015 0.414013 0.02 3.2124 92 65 2493 1686 60 60 0 0 CC 90.169648 300 0 8171 0 KEEP - Atat1 YES MNNG_3 chr17 36097759 36097759 C T ncRNA_exonic Mir877 NA NA ncRNA_exonic Mir877 NA NA ncRNA_exonic ENSMUSG00000077931 NA NA 17qB1 NA NA chr17 36097759 CTAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 291 0 0 108.596328 0.45 0.02 0.721353 55 45 1475 1170 60 60 0 0 CC 44.811286 149 0 4083 0 KEEP - Mir877 YES MNNG_3 chr17 36101322 36101322 C T intronic Abcf1 NA NA intronic Abcf1 NA NA intronic ENSMUSG00000038762 NA NA 17qB1 NA NA chr17 36101322 GCTxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 167 0 0 82.39229 0.52459 0.02 0.957767 29 32 772 854 60 60 0 0 CC 26.374962 88 0 2430 0 KEEP - Abcf1 YES MNNG_3 chr17 37204727 37204727 C T exonic Gabbr1 synonymous SNV NM_019439:c.C1863T:p.I621I exonic Gabbr1 synonymous SNV uc008cmd.1:c.C1515T:p.I505I exonic ENSMUSG00000024462 synonymous SNV ENSMUST00000113650:c.C1515T:p.I505I 17qB1 NA NA chr17 37204727 TATxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 72 2 0 15.648348 0.291667 0.02 -0.210451 17 7 480 186 60 60 0 0 CC 11.732368 39 0 1117 0 KEEP + Gabbr1 YES MNNG_3 chr17 40868100 40868100 C T UTR3 Gm6084 NA NA UTR3 Gm6084 NA NA UTR3 ENSMUSG00000073396 NA NA 17qB2 NA NA chr17 40868100 ATAxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888814 0.888875 0.999931 75 0 0 60.128295 0.585366 0.02 -0.359216 17 24 473 608 60 60 0 0 CC 7.503905 25 0 677 0 KEEP + Gm6084 YES MNNG_3 chr17 43448057 43448057 C T exonic Gpr110 synonymous SNV NM_133776:c.C2235T:p.F745F exonic Gpr110 synonymous SNV uc008coz.2:c.C2235T:p.F745F exonic ENSMUSG00000041293 synonymous SNV ENSMUST00000047399:c.C2235T:p.F745F 17qB3 NA NA chr17 43448057 GTTxGTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 132 0 0 70.050752 0.519231 0.02 1.141686 25 27 617 728 60 60 0 0 CC 17.434457 58 0 1536 0 KEEP + Gpr110 YES MNNG_3 chr17 46343002 46343002 C T intronic Xpo5 NA NA intronic Xpo5 NA NA intronic ENSMUSG00000067150 NA NA 17qC NA NA chr17 46343002 TCCxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 77 0 0 43.594338 0.472222 0.02 -0.315649 19 17 522 463 60 60 0 0 CC 10.511607 35 0 956 0 KEEP + Xpo5 YES MNNG_3 chr17 46378679 46378679 C T exonic Xpo5 nonsynonymous SNV NM_028198:c.C3317T:p.P1106L exonic Xpo5 nonsynonymous SNV uc012aun.1:c.C581T:p.P194L exonic ENSMUSG00000067150 nonsynonymous SNV ENSMUST00000087031:c.C3317T:p.P1106L 17qC NA NA chr17 46378679 GCCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291997 0.292001 0.999988 47 0 0 14.369008 0.352941 0.02 -0.149053 11 6 299 163 60 60 0 0 CC 8.059491 27 0 733 0 KEEP + Xpo5 YES MNNG_3 chr17 46388382 46388382 C T exonic Yipf3 synonymous SNV NM_145353:c.C841T:p.L281L exonic Yipf3 synonymous SNV uc008csd.2:c.C841T:p.L281L exonic ENSMUSG00000071074 synonymous SNV ENSMUST00000123311:c.C556T:p.L186L 17qC NA NA chr17 46388382 GCCxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 105 0 0 93.499122 0.702128 0.02 -0.412113 14 33 388 902 60 60 0 0 CC 14.418433 48 0 1307 0 KEEP + Yipf3 YES MNNG_3 chr17 46395539 46395539 C T exonic Tjap1 synonymous SNV NM_001252475:c.G1443A:p.L481L exonic Tjap1 synonymous SNV uc008csg.1:c.G1443A:p.L481L exonic ENSMUSG00000012296 synonymous SNV ENSMUST00000012440:c.G1443A:p.L481L 17qC NA NA chr17 46395539 CAGxAGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 0.999999 74 1 0 46.516547 0.558824 0.02 -0.306812 15 19 416 476 60 60 0 0 CC 10.827809 36 0 1001 0 KEEP - Tjap1 YES MNNG_3 chr17 47529589 47529589 C T UTR3 Guca1b NA NA UTR3 Guca1b NA NA UTR3 ENSMUSG00000023979 NA NA 17qC NA NA chr17 47529589 TAAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 193 0 0 84.066796 0.523077 0.02 1.125385 31 34 842 874 60 60 0 0 CC 29.164597 97 0 2609 0 KEEP + Guca1b YES MNNG_3 chr17 47816618 47816618 C T exonic Usp49 nonsynonymous SNV NM_198421:c.C1667T:p.S556F exonic Usp49 nonsynonymous SNV uc008cvw.1:c.C1667T:p.S556F exonic "ENSMUSG00000023984,ENSMUSG00000090115" nonsynonymous SNV ENSMUST00000152724:c.C1019T:p.S340F 17qC NA NA chr17 47816618 GGTxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 70 2 0 27.926096 0.52381 0.02 -0.184079 10 11 285 290 60 60 0 0 CC 11.13094 37 0 1065 0 KEEP + Usp49 YES MNNG_3 chr17 49598040 49598040 C T exonic Daam2 synonymous SNV NM_001008231:c.G3159A:p.Q1053Q exonic Daam2 synonymous SNV uc008cyj.1:c.G1116A:p.Q372Q exonic ENSMUSG00000040260 synonymous SNV ENSMUST00000057610:c.G3159A:p.Q1053Q 17qC NA NA chr17 49598040 CCTxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 45 0 0 30.695989 0.5 0.02 -0.219215 12 12 341 322 60 60 0 0 CC 5.114314 17 0 491 0 KEEP - Daam2 YES MNNG_3 chr17 55750677 55750677 C T intronic Vmn2r118 NA NA intronic Vmn2r118 NA NA intronic ENSMUSG00000091504 NA NA 17qC NA NA chr17 55750677 AAAxAAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423472 0.423478 0.999988 61 0 0 29.688079 0.571429 0.02 -0.184101 9 12 252 302 60 60 0 0 CC 8.121554 27 0 760 0 KEEP - Vmn2r118 YES MNNG_3 chr17 56136162 56136162 C T exonic Fsd1 nonsynonymous SNV NM_183178:c.C1478T:p.T493I exonic Fsd1 nonsynonymous SNV uc008dan.1:c.C1478T:p.T493I exonic ENSMUSG00000011589 nonsynonymous SNV ENSMUST00000011733:c.C1478T:p.T493I 17qD NA NA chr17 56136162 ATAxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 101 0 0 44.127102 0.45 0.02 -0.359487 22 18 613 475 60 60 0 0 CC 12.632708 42 0 1167 0 KEEP + Fsd1 YES MNNG_3 chr17 56208621 56208621 C T exonic Ubxn6 nonsynonymous SNV NM_024432:c.G1037A:p.G346D exonic Ubxn6 nonsynonymous SNV uc008dat.1:c.G1037A:p.G346D exonic ENSMUSG00000019578 nonsynonymous SNV ENSMUST00000019722:c.G1037A:p.G346D 17qD NA NA chr17 56208621 CAGxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999998 80 0 0 30.933505 0.393939 0.02 -0.29671 20 13 515 343 60 60 0 0 CC 10.206423 34 0 924 0 KEEP - Ubxn6 YES MNNG_3 chr17 56263882 56263882 C T exonic Sema6b nonsynonymous SNV NM_001130456:c.G2203A:p.A735T exonic Sema6b nonsynonymous SNV uc008dbd.2:c.G2203A:p.A735T exonic ENSMUSG00000001227 nonsynonymous SNV ENSMUST00000001256:c.G2203A:p.A735T 17qD NA NA chr17 56263882 AGGxTCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 63 0 0 28.036443 0.387097 0.02 -0.271808 19 12 529 313 60 60 0 0 CC 7.519043 25 0 690 0 KEEP - Sema6b YES MNNG_3 chr17 56398509 56398509 C T UTR3 Fem1a NA NA UTR3 Fem1a NA NA UTR3 ENSMUSG00000043683 NA NA 17qD "Score=0.966239;Name=No.14110,chr11:29722585" NA chr17 56398509 AGGxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 59 0 0 27.858591 0.444444 0.02 -0.236631 15 12 409 302 60 60 0 0 CC 8.718658 29 0 783 0 KEEP + Fem1a YES MNNG_3 chr17 57445614 57445614 C T exonic Vav1 nonsynonymous SNV NM_001163816:c.C1862T:p.P621L exonic Vav1 nonsynonymous SNV uc008dep.2:c.C1862T:p.P621L exonic ENSMUSG00000034116 nonsynonymous SNV ENSMUST00000005889:c.C1862T:p.P621L 17qD NA NA chr17 57445614 ACCxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 388 1 0 176.78753 0.492754 0.02 2.073702 70 68 1980 1859 60 60 0 0 CC 58.334561 194 0 5473 0 KEEP + Vav1 YES MNNG_3 chr17 66697673 66697673 C T exonic Soga2 synonymous SNV NM_001114098:c.G3981A:p.R1327R exonic 1110012J17Rik synonymous SNV uc008djx.1:c.G1113A:p.R371R exonic ENSMUSG00000052105 synonymous SNV ENSMUST00000145347:c.G2634A:p.R878R 17qE1.1 NA NA chr17 66697673 GCAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 68 0 0 34.443937 0.5 0.02 -0.24548 14 14 382 362 60 60 0 0 CC 9.020493 30 0 805 0 KEEP - Soga2 YES MNNG_3 chr17 67981005 67981005 C T UTR3 Lrrc30 NA NA UTR3 Lrrc30 NA NA UTR3 ENSMUSG00000073375 NA NA 17qE1.1 NA NA chr17 67981005 ACGxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322772 0.322807 0.999892 46 0 0 31.74132 0.666667 0.02 -0.157803 6 12 165 310 60 60 0 0 CC 6.917497 23 0 631 0 KEEP - Lrrc30 YES MNNG_3 chr17 68126255 68126255 C T exonic Lama1 nonsynonymous SNV NM_008480:c.C4151T:p.A1384V exonic Lama1 nonsynonymous SNV uc008dkh.1:c.C4151T:p.A1384V exonic ENSMUSG00000032796 nonsynonymous SNV ENSMUST00000035471:c.C4151T:p.A1384V 17qE1.1 NA NA chr17 68126255 GTGxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.888875 0.888875 1 104 0 0 61.457618 0.585366 0.02 -0.359413 17 24 460 621 60 60 0 0 CC 15.339477 51 0 1408 0 KEEP + Lama1 YES MNNG_3 chr17 7160336 7160336 C T exonic Tagap1 nonsynonymous SNV NM_147155:c.G1309A:p.G437R exonic Tagap1 nonsynonymous SNV uc008aia.1:c.G1309A:p.G437R exonic ENSMUSG00000052031 nonsynonymous SNV ENSMUST00000063683:c.G1309A:p.G437R 17qA1 "Score=0.987168;Name=No.65870,chr17_random:17228" NA chr17 7160336 GTCxACC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 129 0 15 23.105405 0.215686 0.02 1.150172 40 11 1114 294 40 40 0 0 CC 16.534009 55 0 1530 0 KEEP - Tagap1 YES MNNG_3 chr17 71905784 71905784 C T exonic Spdya synonymous SNV NM_001142631:c.C187T:p.L63L exonic Spdya synonymous SNV uc008dmm.1:c.C187T:p.L63L exonic ENSMUSG00000052525 synonymous SNV ENSMUST00000144142:c.C187T:p.L63L 17qE1.3 NA NA chr17 71905784 TGTxTAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 71 0 0 24.345843 0.384615 0.02 -0.227998 16 10 458 271 60 60 0 0 CC 10.228646 34 0 983 0 KEEP + Spdya YES MNNG_3 chr17 72100973 72100973 C T exonic BC027072 nonsynonymous SNV NM_146082:c.G1048A:p.D350N exonic BC027072 nonsynonymous SNV uc008dmv.1:c.G1048A:p.D350N exonic ENSMUSG00000044375 nonsynonymous SNV ENSMUST00000057405:c.G1048A:p.D350N 17qE1.3 NA NA chr17 72100973 TGTxAGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818365 0.818465 0.999879 64 0 0 47.842019 0.527778 0.02 -0.315634 17 19 475 496 60 60 0 0 CC 6.616999 22 0 618 0 KEEP - BC027072 YES MNNG_3 chr17 74845019 74845019 C T exonic Nlrc4 nonsynonymous SNV NM_001033367:c.G1708A:p.D570N exonic Nlrc4 nonsynonymous SNV uc012axe.1:c.G1666A:p.D556N exonic ENSMUSG00000039193 nonsynonymous SNV ENSMUST00000052124:c.G1708A:p.D570N 17qE2 NA NA chr17 74845019 GGTxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760854 0.760887 0.999957 65 0 0 32.612976 0.40625 0.02 -0.28938 19 13 542 358 60 60 0 0 CC 7.821665 26 0 747 0 KEEP - Nlrc4 YES MNNG_3 chr17 75124141 75124141 T G intronic Ttc27 NA NA intronic Ttc27 NA NA intronic ENSMUSG00000024078 NA NA 17qE2 NA NA chr17 75124141 CTCxTTG T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 89 0 0 39.388472 0.516129 0.02 -0.271631 15 16 402 411 60 60 0 0 TT 13.535942 45 0 1262 0 KEEP + Ttc27 NO MNNG_3 chr17 79334154 79334154 C T exonic Cebpz synonymous SNV NM_001024806:c.G1410A:p.R470R exonic Cebpz synonymous SNV uc008dpk.1:c.G1410A:p.R470R exonic ENSMUSG00000024081 synonymous SNV ENSMUST00000024885:c.G1410A:p.R470R 17qE3 NA NA chr17 79334154 AGTxCGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 70 0 0 46.571025 0.529412 0.02 -0.298118 16 18 448 482 60 60 0 0 CC 9.613583 32 0 883 0 KEEP - Cebpz YES MNNG_3 chr17 8358885 8358885 C T intronic Fgfr1op NA NA intronic Fgfr1op NA NA intronic ENSMUSG00000069135 NA NA 17qA1 "Score=0.994109;Name=No.65300,chr17:7162268" NA chr17 8358885 ATGxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 102 2 16 16.981856 0.242424 0.02 -0.289338 25 8 683 211 60 60 0 0 CC 16.526202 55 0 1503 0 KEEP + Fgfr1op YES MNNG_3 chr17 83987228 83987228 C T exonic Kcng3 nonsynonymous SNV NM_153512:c.G1148A:p.G383E exonic Kcng3 nonsynonymous SNV uc008dsd.1:c.G1148A:p.G383E exonic ENSMUSG00000045053 nonsynonymous SNV ENSMUST00000051482:c.G1148A:p.G383E 17qE4 NA NA chr17 83987228 CTTxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 162 4 0 79.426035 0.484375 0.02 1.036231 33 31 922 839 60 60 0 0 CC 21.357551 71 0 2009 0 KEEP - Kcng3 YES MNNG_3 chr17 85105224 85105224 C T intronic Lrpprc NA NA intronic Lrpprc NA NA intronic ENSMUSG00000024120 NA NA 17qE4 NA NA chr17 85105224 TCTxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 91 0 0 56.620964 0.567568 0.02 -0.324441 16 21 450 576 60 60 0 0 CC 11.732742 39 0 1125 0 KEEP - Lrpprc YES MNNG_3 chr17 87024861 87024861 A G intronic Prkce NA NA intronic Prkce NA NA intronic ENSMUSG00000045038 NA NA 17qE4 NA NA chr17 87024861 GTGxCTG A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 94 1 0 16.73596 0.333333 0.02 -0.350666 14 7 356 192 60 60 0 0 AA 14.730681 49 0 1317 0 KEEP + Prkce NO MNNG_3 chr17 89036108 89036108 C T exonic Ston1 nonsynonymous SNV NM_029858:c.C1601T:p.A534V exonic Ston1 nonsynonymous SNV uc008dvq.2:c.C1601T:p.A534V exonic ENSMUSG00000033855 nonsynonymous SNV ENSMUST00000064035:c.C1601T:p.A534V 17qE4 NA NA chr17 89036108 GAGxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 96 0 0 75.533131 0.591837 0.02 -0.429575 20 29 550 761 60 60 0 0 CC 13.485932 45 0 1216 0 KEEP + Ston1 YES MNNG_3 chr17 93599358 93599358 C T exonic Adcyap1 nonsynonymous SNV NM_009625:c.C5T:p.T2I exonic Adcyap1 nonsynonymous SNV uc008dwi.1:c.C5T:p.T2I exonic ENSMUSG00000024256 nonsynonymous SNV ENSMUST00000064775:c.C5T:p.T2I 17qE5 NA NA chr17 93599358 TGAxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 62 0 0 17.091206 0.296296 0.02 -0.236725 19 8 522 204 60 60 0 0 CC 8.120061 27 0 736 0 KEEP + Adcyap1 YES MNNG_3 chr18 10555900 10555900 G A exonic Greb1l nonsynonymous SNV NM_001083628:c.G5113A:p.V1705I exonic Greb1l nonsynonymous SNV uc008eat.1:c.G5113A:p.V1705I exonic ENSMUSG00000042942 nonsynonymous SNV ENSMUST00000048977:c.G5113A:p.V1705I 18qA1 NA NA chr18 10555900 GACxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 154 0 0 107.028306 0.594203 0.02 0.992753 28 41 635 1077 60 60 0 0 GG 21.924409 73 0 1737 0 KEEP + Greb1l YES MNNG_3 chr18 12579693 12579693 G A exonic Lama3 nonsynonymous SNV NM_010680:c.G1444A:p.A482T exonic Lama3 nonsynonymous SNV uc008ecf.2:c.G1444A:p.A482T exonic ENSMUSG00000024421 nonsynonymous SNV ENSMUST00000092070:c.G1444A:p.A482T 18qA1 NA NA chr18 12579693 GTGxCTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 113 0 0 42.568542 0.5 0.02 -0.298108 17 17 471 447 60 60 0 0 GG 18.009823 60 0 1627 0 KEEP + Lama3 YES MNNG_3 chr18 12699222 12699222 G A intronic Lama3 NA NA intronic Lama3 NA NA intronic ENSMUSG00000024421 NA NA 18qA1 NA NA chr18 12699222 GAGxCGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 33 0 0 13.843339 0.545455 0.02 -0.122497 5 6 139 143 60 60 0 0 GG 4.811816 16 0 435 0 KEEP + Lama3 YES MNNG_3 chr18 16147771 16147771 G A intergenic "Chst9(dist=271216),Cdh2(dist=599615)" NA NA intergenic "Chst9(dist=229105),Cdh2(dist=599615)" NA NA ncRNA_exonic ENSMUSG00000043223 NA NA 18qA1 "Score=0.977686;Name=No.70747,chr5:138945963" NA chr18 16147771 CTGxCGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 178 0 0 90.587403 0.5 0.02 0.86872 36 36 995 951 60 60 0 0 GG 26.462215 88 0 2417 0 KEEP NA Chst9 YES MNNG_3 chr18 20196635 20196635 C G exonic Dsc2 nonsynonymous SNV NM_013505:c.G1807C:p.V603L exonic Dsc2 nonsynonymous SNV uc008eef.1:c.G43C:p.V15L exonic ENSMUSG00000024331 nonsynonymous SNV ENSMUST00000039247:c.G1807C:p.V603L 18qA2 NA NA chr18 20196635 TCAxTGG C G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 120 1 0 70.060948 0.481481 0.02 1.319985 28 26 786 739 60 60 0 0 CC 14.437879 48 0 1343 0 KEEP - Dsc2 NO MNNG_3 chr18 34855278 34855278 G A exonic Gfra3 nonsynonymous SNV NM_010280:c.C716T:p.P239L exonic Gfra3 nonsynonymous SNV uc008ele.2:c.C716T:p.P239L exonic ENSMUSG00000024366 nonsynonymous SNV ENSMUST00000025224:c.C716T:p.P239L 18qB1 NA NA chr18 34855278 GAAxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 39 0 0 33.975418 0.705882 0.02 -0.148816 5 12 124 327 60 60 0 0 GG 5.113697 17 0 481 0 KEEP - Gfra3 YES MNNG_3 chr18 36955641 36955641 G A intronic Zmat2 NA NA intronic Zmat2 NA NA intronic ENSMUSG00000001383 NA NA 18qB2 NA NA chr18 36955641 TAAxATC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 63 0 0 27.697774 0.44 0.02 -0.219231 14 11 404 299 60 60 0 0 GG 8.723393 29 0 829 0 KEEP + Zmat2 YES MNNG_3 chr18 37090014 37090014 G A exonic Pcdha1 nonsynonymous SNV NM_054072:c.G76A:p.E26K exonic Pcdha1 nonsynonymous SNV uc008eot.2:c.G76A:p.E26K exonic ENSMUSG00000007440 nonsynonymous SNV ENSMUST00000070797:c.G76A:p.E26K 18qB2 NA NA chr18 37090014 TGGxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 63 0 0 45.013718 0.653846 0.02 -0.227939 9 17 256 442 60 60 0 0 GG 8.718935 29 0 804 0 KEEP + Pcdha1 YES MNNG_3 chr18 37664061 37664061 G A UTR5 Pcdhb20 NA NA UTR5 Pcdhb20 NA NA ncRNA_exonic ENSMUSG00000046191 NA NA 18qB3 NA NA chr18 37664061 GAAxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 58 0 0 19.469401 0.4 0.02 -0.175375 12 8 339 215 60 60 0 0 GG 9.024171 30 0 857 0 KEEP + Pcdhb20 YES MNNG_3 chr18 37817511 37817511 G A intronic Pcdha4-g NA NA ncRNA_exonic AK149307 NA NA exonic ENSMUSG00000073590 nonsynonymous SNV ENSMUST00000097608:c.G74A:p.S25N 18qB3 NA NA chr18 37817511 CTAxCCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 77 0 0 32.778032 0.481481 0.02 -0.236747 14 13 393 347 60 60 0 0 GG 12.031992 40 0 1125 0 KEEP + Pcdha4-g YES MNNG_3 chr18 38410804 38410804 G A exonic 0610009O20Rik synonymous SNV NM_024179:c.G96A:p.G32G exonic 0610009O20Rik synonymous SNV uc008erx.2:c.G96A:p.G32G exonic ENSMUSG00000024442 synonymous SNV ENSMUST00000025314:c.G96A:p.G32G 18qB3 NA NA chr18 38410804 TGGxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 165 3 0 76.294631 0.462687 0.02 1.009987 36 31 965 816 60 60 0 0 GG 22.824372 76 0 2041 0 KEEP + 0610009O20Rik YES MNNG_3 chr18 39934404 39934404 G A exonic Pabpc2 nonsynonymous SNV NM_011033:c.G1067A:p.R356K exonic Pabpc2 nonsynonymous SNV uc008etc.1:c.G1067A:p.R356K exonic ENSMUSG00000051732 nonsynonymous SNV ENSMUST00000063219:c.G1067A:p.R356K 18qB3 NA NA chr18 39934404 GGAxAAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 139 0 0 96.714262 0.5625 0.02 1.036131 28 36 800 986 60 60 0 0 GG 20.75129 69 0 1958 0 KEEP + Pabpc2 YES MNNG_3 chr18 40418130 40418130 G A exonic Kctd16 nonsynonymous SNV NM_026135:c.G116A:p.R39H exonic Kctd16 nonsynonymous SNV uc012bch.1:c.G116A:p.R39H exonic ENSMUSG00000051401 nonsynonymous SNV ENSMUST00000091927:c.G116A:p.R39H 18qB3 NA NA chr18 40418130 CTCxCCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 65 2 0 39.799101 0.592593 0.02 -0.236606 11 16 277 401 60 60 0 0 GG 9.018836 30 0 786 0 KEEP + Kctd16 YES MNNG_3 chr18 55051500 55051500 G A exonic Zfp608 nonsynonymous SNV NM_175751:c.C4351T:p.H1451Y exonic Zfp608 nonsynonymous SNV uc008eyd.2:c.C3073T:p.H1025Y exonic ENSMUSG00000052713 nonsynonymous SNV ENSMUST00000064763:c.C4351T:p.H1451Y 18qD3 NA NA chr18 55051500 AGTxGCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139813 0.139832 0.999863 35 0 0 15.549013 0.5 0.02 -0.105208 6 6 161 163 60 60 0 0 GG 6.015338 20 0 553 0 KEEP - Zfp608 YES MNNG_3 chr18 61239950 61239950 G A exonic Pdgfrb nonsynonymous SNV NM_001146268:c.G2699A:p.G900D exonic Pdgfrb nonsynonymous SNV uc008fbm.2:c.G1667A:p.G556D exonic ENSMUSG00000024620 nonsynonymous SNV ENSMUST00000025522:c.G2699A:p.G900D 18qE1 NA NA chr18 61239950 CAGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 116 0 0 50.407592 0.411765 0.02 1.052831 30 21 834 554 60 60 0 0 GG 15.039192 50 0 1392 0 KEEP + Pdgfrb YES MNNG_3 chr18 74225201 74225201 G A upstream Mapk4 NA NA ncRNA_exonic AK036329 NA NA exonic ENSMUSG00000053861 nonsynonymous SNV ENSMUST00000066583:c.G446A:p.G149D 18qE2 NA NA chr18 74225201 AGGxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 61 2 0 27.916495 0.611111 0.02 -0.157794 7 11 190 279 60 60 0 0 GG 10.519017 35 0 927 0 KEEP - Mapk4 YES MNNG_3 chr18 74377523 74377523 G A exonic Cxxc1 nonsynonymous SNV NM_028868:c.G332A:p.R111K exonic Cxxc1 nonsynonymous SNV uc008fpg.1:c.G332A:p.R111K exonic ENSMUSG00000024560 nonsynonymous SNV ENSMUST00000025444:c.G332A:p.R111K 18qE2 NA NA chr18 74377523 AGAxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 50 0 0 22.465224 0.428571 0.02 -0.184088 12 9 319 244 60 60 0 0 GG 7.520549 25 0 712 0 KEEP + Cxxc1 YES MNNG_3 chr18 74958098 74958098 C T exonic Acaa2 nonsynonymous SNV NM_177470:c.C710T:p.S237F exonic Acaa2 nonsynonymous SNV uc008fpt.1:c.C710T:p.S237F exonic ENSMUSG00000036880 nonsynonymous SNV ENSMUST00000041053:c.C710T:p.S237F 18qE2 NA NA chr18 74958098 CGTxCGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 67 0 0 30.428169 0.461538 0.02 -0.227996 14 12 402 325 60 60 0 0 CC 8.721058 29 0 803 0 KEEP + Acaa2 YES MNNG_3 chr18 78245570 78245570 C T exonic Siglec15 nonsynonymous SNV NM_001101038:c.G154A:p.V52M exonic Siglec15 nonsynonymous SNV uc008fsb.1:c.G154A:p.V52M exonic ENSMUSG00000091055 nonsynonymous SNV ENSMUST00000170760:c.G154A:p.V52M 18qE3 NA NA chr18 78245570 TCAxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760795 0.760887 0.999879 64 0 0 47.282392 0.575758 0.02 -0.289289 14 19 384 480 60 60 0 0 CC 6.598831 22 0 565 0 KEEP - Siglec15 YES MNNG_3 chr18 80314052 80314052 G A exonic Pard6g nonsynonymous SNV NM_053117:c.G640A:p.D214N exonic Pard6g nonsynonymous SNV uc008fsj.2:c.G640A:p.D214N exonic ENSMUSG00000056214 nonsynonymous SNV ENSMUST00000070219:c.G640A:p.D214N 18qE3 NA NA chr18 80314052 AATxATG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 69 0 0 40.696019 0.592593 0.02 -0.23671 11 16 313 410 60 60 0 0 GG 9.92793 33 0 957 0 KEEP + Pard6g YES MNNG_3 chr18 80951006 80951006 G A exonic Atp9b synonymous SNV NM_001201569:c.C2592T:p.T864T exonic Atp9b synonymous SNV uc008fth.2:c.C2592T:p.T864T exonic ENSMUSG00000024566 synonymous SNV ENSMUST00000025458:c.C2592T:p.T864T 18qE3 NA NA chr18 80951006 TCTxGTA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 278 3 0 143.432136 0.467742 0.02 2.29444 66 58 1858 1530 60 60 0 0 GG 36.076032 120 0 3382 0 KEEP - Atp9b YES MNNG_3 chr18 82575120 82575120 C T exonic Galr1 synonymous SNV NM_008082:c.G423A:p.R141R exonic Galr1 synonymous SNV uc008ftq.1:c.G423A:p.R141R exonic ENSMUSG00000024553 synonymous SNV ENSMUST00000065224:c.G423A:p.R141R 18qE3 NA NA chr18 82575120 GCGxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119875 0.120436 0.995343 28 0 0 17.288339 0.636364 0.02 -0.096283 4 7 106 171 60 60 0 0 CC 3.33446 13 1 348 5 KEEP - Galr1 YES MNNG_3 chr19 10102123 10102123 G A exonic Rab3il1 nonsynonymous SNV NM_144538:c.G437A:p.G146D exonic Rab3il1 nonsynonymous SNV uc008gow.1:c.G437A:p.G146D exonic ENSMUSG00000024663 nonsynonymous SNV ENSMUST00000113161:c.G437A:p.G146D 19qA NA NA chr19 10102123 GGGxCAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 139 0 0 112.534165 0.7 0.02 0.974429 18 42 479 1084 60 60 0 0 GG 17.142102 57 0 1554 0 KEEP + Rab3il1 YES MNNG_3 chr19 10274953 10274953 C T exonic Fen1 nonsynonymous SNV NM_001271614:c.G616A:p.E206K exonic Fen1 nonsynonymous SNV uc008gpf.1:c.G616A:p.E206K exonic ENSMUSG00000024742 nonsynonymous SNV ENSMUST00000167933:c.G616A:p.E206K 19qA NA NA chr19 10274953 ACTxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 174 1 0 65.218426 0.350649 0.02 1.020116 50 27 1411 740 60 60 0 0 CC 20.756696 69 0 1978 0 KEEP - Fen1 YES MNNG_3 chr19 10298869 10298869 C T exonic Myrf nonsynonymous SNV NM_001033481:c.G733A:p.G245R exonic Gm98 nonsynonymous SNV uc012bil.1:c.G733A:p.G245R exonic ENSMUSG00000036098 nonsynonymous SNV ENSMUST00000088013:c.G733A:p.G245R 19qA NA NA chr19 10298869 CTCxATG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 228 2 0 80.142293 0.380435 0.02 0.88861 57 35 1624 900 60 60 0 0 CC 27.371152 91 0 2599 0 KEEP - Myrf YES MNNG_3 chr19 10932787 10932787 C G exonic Tmem132a nonsynonymous SNV NM_133804:c.G2868C:p.K956N exonic Tmem132a nonsynonymous SNV uc008grc.1:c.G2868C:p.K956N exonic ENSMUSG00000024736 nonsynonymous SNV ENSMUST00000025645:c.G2868C:p.K956N 19qA NA NA chr19 10932787 TCGxTTC C G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 98 0 0 22.332843 0.227273 0.02 -0.385844 34 10 956 278 60 60 0 0 CC 12.63203 42 0 1161 0 KEEP - Tmem132a NO MNNG_3 chr19 11040428 11040428 C T intronic Ms4a10 NA NA intronic Ms4a10 NA NA intronic ENSMUSG00000024731 NA NA 19qA NA NA chr19 11040428 AATxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582877 0.58293 0.999909 57 0 0 33.274917 0.5 0.02 -0.2279 13 13 348 349 60 60 0 0 CC 7.219579 24 0 681 0 KEEP - Ms4a10 YES MNNG_3 chr19 11067574 11067574 G A intronic Ms4a15 NA NA intronic Ms4a15 NA NA intronic ENSMUSG00000067571 NA NA 19qA NA NA chr19 11067574 CTGxCTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 216 0 0 169.614332 0.681319 0.02 0.764438 29 62 794 1648 60 60 0 1 GG 27.87737 93 0 2519 0 KEEP - Ms4a15 YES MNNG_3 chr19 12316024 12316024 C T exonic Olfr262 stopgain SNV NM_146688:c.G126A:p.W42X exonic Olfr262 stopgain SNV uc008gtt.1:c.G126A:p.W42X exonic ENSMUSG00000067519 stopgain SNV ENSMUST00000087818:c.G126A:p.W42X 19qA "Score=0.948794;Name=No.72620,chr19:12237504" NA chr19 12316024 ATTxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 124 0 0 54.827717 0.353846 0.02 1.027393 42 23 1177 622 60 60 0 0 CC 15.040847 50 0 1420 0 KEEP - Olfr262 YES MNNG_3 chr19 13889618 13889618 G A exonic Olfr1499 nonsynonymous SNV NM_146796:c.C461T:p.S154F exonic Olfr1499 nonsynonymous SNV uc008gwb.1:c.C461T:p.S154F exonic ENSMUSG00000045395 nonsynonymous SNV ENSMUST00000055672:c.C461T:p.S154F 19qA NA NA chr19 13889618 CCAxATA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 159 0 0 142.030167 0.611765 0.02 0.84323 33 52 937 1419 60 60 0 0 GG 15.943841 53 0 1516 0 KEEP - Olfr1499 YES MNNG_3 chr19 22993131 22993131 G A exonic Trpm3 synonymous SNV NM_001035243:c.G2775A:p.V925V exonic Trpm3 synonymous SNV uc008gzw.1:c.G33A:p.V11V exonic ENSMUSG00000052387 synonymous SNV ENSMUST00000172010:c.G1368A:p.V456V 19qB NA NA chr19 22993131 GGTxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 141 0 0 148.666814 0.708861 0.02 0.904884 23 56 644 1427 60 60 0 0 GG 15.943894 53 0 1519 0 KEEP + Trpm3 YES MNNG_3 chr19 25421393 25421393 C T intronic Kank1 NA NA intronic Kank1 NA NA intronic ENSMUSG00000032702 NA NA 19qB NA NA chr19 25421393 GTAxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 250 2 110 55.348092 0.511628 0.02 -0.376994 21 22 580 578 60 60 0 0 CC 49.616891 165 0 4575 0 KEEP + Kank1 YES MNNG_3 chr19 27464643 27464643 G A UTR3 D19Bwg1357e NA NA ncRNA_exonic mKIAA0020 NA NA UTR3 ENSMUSG00000041360 NA NA 19qC1 NA NA chr19 27464643 GAAxCGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.817946 0.818465 0.999366 64 0 0 52.292894 0.555556 0.02 -0.315662 16 20 452 535 60 60 0 0 GG 5.113475 17 0 476 0 KEEP - D19Bwg1357e YES MNNG_3 chr19 29101798 29101798 C T exonic Ak3 nonsynonymous SNV NM_021299:c.G307A:p.D103N exonic Ak3 nonsynonymous SNV uc008hcx.1:c.G307A:p.D103N exonic ENSMUSG00000024782 nonsynonymous SNV ENSMUST00000025696:c.G307A:p.D103N 19qC1 NA NA chr19 29101798 TATxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.99986 43 0 0 14.016741 0.315789 0.02 -0.166602 13 6 362 163 60 60 0 0 CC 5.715227 19 0 535 0 KEEP - Ak3 YES MNNG_3 chr19 34668128 34668128 C T UTR3 Gm14446 NA NA UTR3 Gm14446 NA NA UTR3 ENSMUSG00000079339 NA NA 19qC1 "Score=0.956032;Name=No.72672,chr19:34681336" NA chr19 34668128 GCTxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 274 2 0 47.955838 0.175573 0.02 2.037158 108 23 3056 634 60 60 0 0 CC 32.778274 109 0 3106 0 KEEP - Gm14446 YES MNNG_3 chr19 38060527 38060527 G A exonic Myof nonsynonymous SNV NM_001099634:c.C653T:p.P218L exonic Myof nonsynonymous SNV uc008hit.1:c.C653T:p.P218L exonic ENSMUSG00000048612 nonsynonymous SNV ENSMUST00000040369:c.C653T:p.P218L 19qC2 NA NA chr19 38060527 ACGxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 100 0 0 70.467568 0.590909 0.02 -0.385797 18 26 494 710 60 60 0 0 GG 14.125636 47 0 1280 0 KEEP - Myof YES MNNG_3 chr19 39861362 39861362 G A exonic Cyp2c40 nonsynonymous SNV NM_010004:c.C935T:p.T312I exonic Cyp2c40 nonsynonymous SNV uc008hke.2:c.C935T:p.T312I exonic ENSMUSG00000025004 nonsynonymous SNV ENSMUST00000025969:c.C848T:p.T283I 19qC3 "Score=0.934253;Name=No.72686,chr19:39681598" NA chr19 39861362 ATGxTAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 410 1 27 197.836198 0.522876 0.02 3.256011 73 80 1996 2057 60 60 0 0 GG 53.23431 177 0 4858 0 KEEP - Cyp2c40 YES MNNG_3 chr19 4104831 4104831 C T exonic Pitpnm1 nonsynonymous SNV NM_008851:c.C658T:p.L220F exonic Pitpnm1 nonsynonymous SNV uc008fyo.2:c.C658T:p.L220F exonic ENSMUSG00000024851 nonsynonymous SNV ENSMUST00000100022:c.C658T:p.L220F 19qA NA NA chr19 4104831 ATGxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 67 0 0 24.28682 0.314286 0.02 -0.30683 24 11 650 285 60 60 0 0 CC 8.12029 27 0 738 0 KEEP + Pitpnm1 YES MNNG_3 chr19 41068463 41068463 G A intronic Blnk NA NA intronic Blnk NA NA intronic ENSMUSG00000061132 NA NA 19qC3 NA NA chr19 41068463 AGGxCAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780958 0.78106 0.999869 66 0 0 73.131452 0.764706 0.02 -0.2981 8 26 225 688 60 60 0 0 GG 6.316697 21 0 587 0 KEEP - Blnk YES MNNG_3 chr19 41191683 41191683 G A intronic Tll2 NA NA intronic Tll2 NA NA intronic ENSMUSG00000025013 NA NA 19qC3 NA NA chr19 41191683 GCAxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 48 0 0 43.9661 1 0.02 -0.131507 0 14 0 373 0 60 0 0 GG 8.421586 28 0 786 0 KEEP - Tll2 YES MNNG_3 chr19 43913840 43913840 G A ncRNA_exonic Gm10768 NA NA ncRNA_exonic Gm10768 NA NA UTR5 ENSMUSG00000074828 NA NA 19qC3 NA NA chr19 43913840 TAGxTAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 100 0 0 93.52374 0.660377 0.02 1.03538 18 35 494 916 60 60 0 0 GG 9.325232 31 0 878 0 KEEP + Gm10768 YES MNNG_3 chr19 46550061 46550061 G A exonic Sufu synonymous SNV NM_001025391:c.G1221A:p.T407T exonic Sufu synonymous SNV uc008hto.1:c.G1224A:p.T408T exonic ENSMUSG00000025231 synonymous SNV ENSMUST00000111866:c.G1089A:p.T363T 19qC3 NA NA chr19 46550061 CACxTTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717307 0.717315 0.999988 66 0 0 37.997522 0.516129 0.02 -0.271742 15 16 405 397 60 60 0 0 GG 8.118746 27 0 719 0 KEEP + Sufu YES MNNG_3 chr19 47745895 47745895 C T exonic Col17a1 synonymous SNV NM_007732:c.G1107A:p.G369G exonic Col17a1 synonymous SNV uc008hvi.2:c.G1107A:p.G369G exonic ENSMUSG00000025064 synonymous SNV ENSMUST00000026045:c.G1107A:p.G369G 19qD1 NA NA chr19 47745895 CTTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865652 0.865745 0.999892 71 0 0 30.421433 0.333333 0.02 -0.341955 26 13 725 350 60 60 0 0 CC 6.917822 23 0 641 0 KEEP - Col17a1 YES MNNG_3 chr19 47946487 47946487 C T intronic Gsto2 NA NA intronic "D19Ertd652e,Gsto2" NA NA intronic ENSMUSG00000025069 NA NA 19qD1 NA NA chr19 47946487 TTGxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.992926 0.992926 1 140 0 0 44.094859 0.3125 0.02 1.134846 44 20 1184 518 60 60 0 0 CC 17.444749 58 0 1605 0 KEEP + Gsto2 YES MNNG_3 chr19 48785103 48785103 C T exonic Sorcs3 synonymous SNV NM_025696:c.C1770T:p.I590I exonic Sorcs3 synonymous SNV uc008hvx.1:c.C1770T:p.I590I exonic ENSMUSG00000063434 synonymous SNV ENSMUST00000078880:c.C1770T:p.I590I 19qD1 NA NA chr19 48785103 CATxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 167 4 0 41.470699 0.3 0.02 1.062422 42 18 1203 488 60 60 0 0 CC 23.465269 78 0 2247 0 KEEP + Sorcs3 YES MNNG_3 chr19 4941838 4941838 G A exonic Peli3 nonsynonymous SNV NM_172835:c.C74T:p.S25F exonic Peli3 nonsynonymous SNV uc008gbs.2:c.C74T:p.S25F exonic ENSMUSG00000024901 nonsynonymous SNV ENSMUST00000025834:c.C74T:p.S25F 19qA NA NA chr19 4941838 CAAxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.926628 0.92664 0.999988 77 0 0 69.584755 0.577778 0.02 -0.394592 19 26 540 705 60 60 0 0 GG 8.122405 27 0 774 0 KEEP - Peli3 YES MNNG_3 chr19 50752750 50752750 G A exonic Sorcs1 nonsynonymous SNV NM_001252501:c.C209T:p.P70L exonic Sorcs1 nonsynonymous SNV uc008hwa.2:c.C209T:p.P70L exonic ENSMUSG00000043531 nonsynonymous SNV ENSMUST00000076049:c.C209T:p.P70L 19qD1 NA NA chr19 50752750 GGCxGGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.716861 0.717315 0.999366 53 0 0 59.291439 0.724138 0.02 -0.271806 8 21 219 567 60 60 0 0 GG 5.110353 17 0 448 0 KEEP - Sorcs1 YES MNNG_3 chr19 56392346 56392346 G A exonic Habp2 nonsynonymous SNV NM_146101:c.G1373A:p.G458E exonic Habp2 nonsynonymous SNV uc008hys.1:c.G1373A:p.G458E exonic ENSMUSG00000025075 nonsynonymous SNV ENSMUST00000095948:c.G1373A:p.G458E 19qD2 NA NA chr19 56392346 CCGxATC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641339 0.641347 0.999988 65 0 0 33.000421 0.464286 0.02 -0.245532 15 13 430 352 60 60 0 0 GG 8.121968 27 0 765 0 KEEP + Habp2 YES MNNG_3 chr19 58875302 58875302 C T splicing Hspa12a(NM_175199:exon12:c.1390+1G>A) NA NA splicing "Hspa12a(uc008iaw.1:exon12:c.1390+1G>A,uc008iax.1:exon13:c.1441+1G>A)" NA NA splicing ENSMUSG00000025092(ENSMUST00000066285:exon12:c.1390+1G>A) NA NA 19qD2 NA NA chr19 58875302 TCAxGGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 192 0 0 133.540887 0.658228 0.02 0.799107 27 52 682 1308 60 60 0 0 CC 22.54539 75 0 1947 0 KEEP - Hspa12a YES MNNG_3 chr19 59093311 59093311 C T exonic 4930506M07Rik synonymous SNV NM_001114312:c.G996A:p.R332R exonic 4930506M07Rik synonymous SNV uc008ibc.1:c.G375A:p.R125R exonic ENSMUSG00000041362 synonymous SNV ENSMUST00000047511:c.G996A:p.R332R 19qD3 NA NA chr19 59093311 GTTxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934491 0.934492 0.999999 91 0 0 38.012915 0.355556 0.02 -0.394586 29 16 813 431 60 60 0 0 CC 10.829288 36 0 1022 0 KEEP - 4930506M07Rik YES MNNG_3 chr19 59102642 59102642 C T intronic 4930506M07Rik NA NA intronic 4930506M07Rik NA NA intronic ENSMUSG00000041362 NA NA 19qD3 NA NA chr19 59102642 ACCxACC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 230 0 0 61.613264 0.25 0.02 2.247653 81 27 2252 751 60 60 0 0 CC 25.267277 84 0 2366 0 KEEP - 4930506M07Rik YES MNNG_3 chr19 5958798 5958798 C T intronic Pola2 NA NA UTR3 Pola2 NA NA intronic ENSMUSG00000024833 NA NA 19qA NA NA chr19 5958798 ATTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522089 0.522161 0.999863 47 0 0 25.19245 0.416667 0.02 -0.210388 14 10 384 275 60 60 0 0 CC 6.016284 20 0 568 0 KEEP - Pola2 YES MNNG_3 chr19 60845733 60845733 C T intronic Eif3a NA NA intronic Eif3a NA NA intronic ENSMUSG00000024991 NA NA 19qD3 NA NA chr19 60845733 GTAxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 153 2 0 42.269529 0.277778 0.02 0.966112 52 20 1416 512 60 60 0 0 CC 16.538354 55 0 1485 0 KEEP - Eif3a YES MNNG_3 chr19 7067547 7067547 G A exonic Nudt22 nonsynonymous SNV NM_026675:c.C914T:p.S305L exonic Nudt22 nonsynonymous SNV uc008gjz.1:c.C914T:p.S305L exonic ENSMUSG00000037349 nonsynonymous SNV ENSMUST00000041686:c.C914T:p.S305L 19qA NA NA chr19 7067547 AGTxATA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 58 0 0 43.757966 0.586207 0.02 -0.254264 12 17 345 442 60 60 0 0 GG 7.519853 25 0 708 0 KEEP - Nudt22 YES MNNG_3 chr19 7357958 7357958 G A exonic Mark2 nonsynonymous SNV NM_001080388:c.C1202T:p.A401V exonic Mark2 nonsynonymous SNV uc008gkq.1:c.C1103T:p.A368V exonic ENSMUSG00000024969 nonsynonymous SNV ENSMUST00000171352:c.C50T:p.A17V 19qA NA NA chr19 7357958 TTGxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 210 2 0 155.070372 0.612245 0.02 0.738202 38 60 1041 1549 60 60 0 0 GG 26.165474 87 0 2407 0 KEEP - Mark2 YES MNNG_3 chr19 7928583 7928583 G A intergenic "Slc22a26(dist=51426),Slc22a27(dist=10296)" NA NA intergenic "BC014805(dist=51426),AB056442(dist=10296)" NA NA intergenic "ENSMUSG00000053303(dist=51426),ENSMUSG00000067656(dist=10298)" NA NA 19qA "Score=0.900086;Name=No.72582,chr19:8280597" NA chr19 7928583 AAAxCTA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 152 1 49 38.397437 0.421053 0.02 -0.333152 22 16 603 420 36 36 0 0 GG 19.853504 66 0 1870 0 KEEP NA Slc22a26 YES MNNG_3 chr19 9039919 9039919 G A exonic Tut1 nonsynonymous SNV NM_197993:c.G1879A:p.V627M exonic Tut1 nonsynonymous SNV uc008goh.1:c.G1879A:p.V627M exonic ENSMUSG00000071645 nonsynonymous SNV ENSMUST00000096239:c.G1879A:p.V627M 19qA NA NA chr19 9039919 TTGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 144 0 0 84.455099 0.589286 0.02 1.106401 23 33 634 852 60 60 0 0 GG 18.933032 63 0 1722 0 KEEP + Tut1 YES MNNG_3 chr1 100163987 100163987 C T intergenic "1810006J02Rik(dist=122755),Slco6d1(dist=153714)" NA NA intergenic "AK007349(dist=122755),Slco6d1(dist=153714)" NA NA intergenic "ENSMUSG00000026335(dist=171778),ENSMUSG00000026336(dist=153714)" NA NA 1qD NA NA chr1 100163987 ACTxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 122 0 0 73.50103 0.54902 0.02 1.23928 23 28 648 754 60 60 0 0 CC 18.349309 61 0 1720 0 KEEP NA 1810006J02Rik YES MNNG_3 chr1 107560928 107560928 C T exonic 2310035C23Rik nonsynonymous SNV NM_029349:c.C244T:p.P82S exonic 2310035C23Rik nonsynonymous SNV uc007cgi.2:c.C244T:p.P82S exonic ENSMUSG00000026319 nonsynonymous SNV ENSMUST00000039173:c.C244T:p.P82S 1qE2.1 NA NA chr1 107560928 GCTxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641278 0.641347 0.999892 53 0 0 36.246241 0.5 0.02 -0.245521 14 14 393 380 60 60 0 0 CC 6.856131 23 0 619 0 KEEP + 2310035C23Rik YES MNNG_3 chr1 122238387 122238387 C T intronic C1ql2 NA NA intronic C1ql2 NA NA intronic ENSMUSG00000036907 NA NA 1qE2.3 NA NA chr1 122238387 TGAxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 239 2 0 114.261945 0.494505 0.02 0.799438 46 45 1285 1202 60 60 0 0 CC 35.469504 118 0 3310 0 KEEP + C1ql2 YES MNNG_3 chr1 123203527 123203527 C T exonic Insig2 nonsynonymous SNV NM_001271532:c.G226A:p.D76N exonic Insig2 nonsynonymous SNV uc011wqv.1:c.G238A:p.D80N exonic ENSMUSG00000003721 nonsynonymous SNV ENSMUST00000003818:c.G550A:p.D184N 1qE2.3 NA NA chr1 123203527 AATxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 69 0 0 36.545809 0.5 0.02 -0.245539 14 14 406 383 60 60 0 0 CC 9.927683 33 0 952 0 KEEP - Insig2 YES MNNG_3 chr1 128278681 128278681 C T exonic Nckap5 nonsynonymous SNV NM_172484:c.G85A:p.E29K exonic Nckap5 nonsynonymous SNV uc007ckk.1:c.G85A:p.E29K exonic ENSMUSG00000049690 nonsynonymous SNV ENSMUST00000057846:c.G82A:p.E28K 1qE3 NA NA chr1 128278681 ACTxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162444 0.162467 0.999859 33 0 0 37.087864 0.923077 0.02 -0.113992 1 12 28 329 60 60 0 0 CC 5.414818 18 0 513 0 KEEP - Nckap5 YES MNNG_3 chr1 130228490 130228490 C T UTR3 Mcm6 NA NA UTR3 Mcm6 NA NA UTR3 ENSMUSG00000026355 NA NA 1qE4 NA NA chr1 130228490 TGGxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.99986 50 0 0 26.095963 0.44 0.02 -0.219186 14 11 388 283 60 60 0 0 CC 5.714688 19 0 524 0 KEEP - Mcm6 YES MNNG_3 chr1 131492297 131492297 C T exonic Thsd7b nonsynonymous SNV NM_172485:c.C490T:p.P164S exonic Thsd7b nonsynonymous SNV uc007clv.2:c.C490T:p.P164S exonic ENSMUSG00000042581 nonsynonymous SNV ENSMUST00000152305:c.C259T:p.P87S 1qE4 NA NA chr1 131492297 GCTxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 159 0 0 84.968519 0.492537 0.02 1.009858 34 33 949 894 60 60 0 0 CC 22.555973 75 0 2109 0 KEEP + Thsd7b YES MNNG_3 chr1 132480016 132480016 C T exonic Zp3r nonsynonymous SNV NM_009581:c.G1201A:p.D401N exonic Zp3r nonsynonymous SNV uc007cmb.2:c.G1201A:p.D401N exonic ENSMUSG00000042554 nonsynonymous SNV ENSMUST00000128128:c.G1069A:p.D357N 1qE4 NA NA chr1 132480016 CATxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 76 0 0 39.995598 0.555556 0.02 -0.236761 12 15 342 409 60 60 0 0 CC 9.626487 32 0 917 0 KEEP - Zp3r YES MNNG_3 chr1 133647219 133647219 C T exonic Slc26a9 synonymous SNV NM_177243:c.C45T:p.Y15Y exonic Slc26a9 synonymous SNV uc007cns.1:c.C45T:p.Y15Y exonic ENSMUSG00000042268 synonymous SNV ENSMUST00000147800:c.C45T:p.Y15Y 1qE4 NA NA chr1 133647219 GTAxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 167 0 0 91.402351 0.474359 0.02 0.904694 41 37 1139 972 60 60 0 0 CC 19.538404 65 0 1779 0 KEEP + Slc26a9 YES MNNG_3 chr1 135189087 135189087 C T exonic Plekha6 synonymous SNV NM_001160268:c.C2628T:p.T876T exonic Plekha6 synonymous SNV uc007cpx.2:c.C1713T:p.T571T exonic ENSMUSG00000041757 synonymous SNV ENSMUST00000086505:c.C2736T:p.T912T 1qE4 NA NA chr1 135189087 CACxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139529 0.139832 0.997832 36 0 0 9.391513 0.333333 0.02 -0.105205 8 4 215 108 60 60 0 0 CC 4.812692 16 0 447 0 KEEP + Plekha6 YES MNNG_3 chr1 135556863 135556863 C T UTR5 Zbed6 NA NA UTR5 Zbed6 NA NA intronic ENSMUSG00000026464 NA NA 1qE4 NA NA chr1 135556863 AAGxTAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.934492 0.934492 1 110 2 0 51.038705 0.456522 0.02 -0.403321 25 21 700 548 60 60 0 0 CC 16.242846 54 0 1514 0 KEEP - Zbed6 YES MNNG_3 chr1 136209729 136209729 C T exonic Ppfia4 nonsynonymous SNV NM_001144855:c.G2452A:p.D818N exonic Ppfia4 nonsynonymous SNV uc007crp.2:c.G2389A:p.D797N exonic ENSMUSG00000026458 nonsynonymous SNV ENSMUST00000027729:c.G2377A:p.D793N 1qE4 NA NA chr1 136209729 CATxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 288 0 0 150.251256 0.513274 0.02 2.203836 55 58 1576 1566 60 60 0 0 CC 38.806192 129 0 3702 0 KEEP - Ppfia4 YES MNNG_3 chr1 136215800 136215800 C T exonic Ppfia4 synonymous SNV NM_001144855:c.G1758A:p.Q586Q exonic Ppfia4 synonymous SNV uc007crp.2:c.G1695A:p.Q565Q exonic ENSMUSG00000026458 synonymous SNV ENSMUST00000027729:c.G1683A:p.Q561Q 1qE4 NA NA chr1 136215800 CTCxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 111 0 0 49.720682 0.5 0.02 -0.333212 19 19 530 521 60 60 0 0 CC 15.640017 52 0 1460 0 KEEP - Ppfia4 YES MNNG_3 chr1 136304497 136304497 T C intronic Cyb5r1 NA NA intronic Cyb5r1 NA NA exonic ENSMUSG00000026456 synonymous SNV ENSMUST00000049223:c.T579C:p.Y193Y 1qE4 NA NA chr1 136304497 CTAxGCC T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 124 2 0 34.303924 0.380952 0.02 -0.368052 26 16 663 388 60 60 0 0 TT 20.448898 68 0 1828 0 KEEP + Cyb5r1 NO MNNG_3 chr1 136640178 136640178 C T exonic Syt2 nonsynonymous SNV NM_009307:c.C446T:p.S149F exonic Syt2 nonsynonymous SNV uc007csk.1:c.C446T:p.S149F exonic ENSMUSG00000026452 nonsynonymous SNV ENSMUST00000121990:c.C446T:p.S149F 1qE4 NA NA chr1 136640178 TTTxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 89 0 0 60.594631 0.589744 0.02 -0.350729 16 23 461 611 60 60 0 0 CC 10.528908 35 0 1000 0 KEEP + Syt2 YES MNNG_3 chr1 136668620 136668620 C T exonic Ppp1r12b synonymous SNV NM_001081307:c.G2799A:p.R933R exonic Ppp1r12b synonymous SNV uc007csl.1:c.G972A:p.R324R exonic ENSMUSG00000073557 synonymous SNV ENSMUST00000045665:c.G2799A:p.R933R 1qE4 NA NA chr1 136668620 TCGxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 132 0 0 47.208469 0.37037 0.02 1.12486 34 20 913 531 60 60 0 0 CC 17.441009 58 0 1613 0 KEEP - Ppp1r12b YES MNNG_3 chr1 137022850 137022850 C T exonic Ptprv unknown UNKNOWN exonic Ptprv nonsynonymous SNV uc007csr.2:c.G239A:p.G80E intergenic "ENSMUSG00000066885(dist=13967),ENSMUSG00000031506(dist=6452)" NA NA 1qE4 NA NA chr1 137022850 TGCxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 89 1 0 43.902352 0.472222 0.02 -0.376859 19 17 508 466 60 60 0 0 CC 10.227258 34 0 956 0 KEEP - Ptprv YES MNNG_3 chr1 137367487 137367487 C T exonic Nav1 nonsynonymous SNV NM_173437:c.G1933A:p.V645I exonic Nav1 nonsynonymous SNV uc007ctl.1:c.G751A:p.V251I exonic ENSMUSG00000009418 nonsynonymous SNV ENSMUST00000040599:c.G1933A:p.V645I 1qE4 NA NA chr1 137367487 TTAxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 111 0 0 65.526943 0.482143 0.02 1.106418 29 27 794 695 60 60 0 0 CC 11.43062 38 0 1073 0 KEEP - Nav1 YES MNNG_3 chr1 138069565 138069565 C T exonic Kif21b synonymous SNV NM_001039472:c.C4806T:p.I1602I exonic Kif21b synonymous SNV uc007cul.1:c.C4806T:p.I1602I exonic ENSMUSG00000041642 synonymous SNV ENSMUST00000075164:c.C4806T:p.I1602I 1qE4 NA NA chr1 138069565 CATxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.948396 0.948402 0.999994 98 0 0 71.648471 0.574468 0.02 -0.420893 20 27 569 727 60 60 0 0 CC 12.934182 43 0 1221 0 KEEP + Kif21b YES MNNG_3 chr1 138116364 138116364 C T exonic 5730559C18Rik nonsynonymous SNV NM_028872:c.G1192A:p.G398S exonic 5730559C18Rik nonsynonymous SNV uc007cuo.1:c.G1150A:p.G384S exonic ENSMUSG00000041605 nonsynonymous SNV ENSMUST00000048668:c.G1150A:p.G384S 1qE4 NA NA chr1 138116364 GGCxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 53 0 0 34.409664 0.541667 0.02 -0.210438 11 13 304 354 60 60 0 0 CC 6.891359 23 0 613 0 KEEP - 5730559C18Rik YES MNNG_3 chr1 141145357 141145357 C T exonic Crb1 synonymous SNV NM_133239:c.G1464A:p.G488G exonic Crb1 synonymous SNV uc007cwe.1:c.G348A:p.G116G exonic ENSMUSG00000063681 synonymous SNV ENSMUST00000027616:c.G1281A:p.G427G 1qF NA NA chr1 141145357 GCTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 51 0 0 25.356529 0.47619 0.02 -0.184141 11 10 309 269 60 60 0 0 CC 7.51924 25 0 696 0 KEEP - Crb1 YES MNNG_3 chr1 148748759 148748759 C T exonic Brinp3 synonymous SNV NM_001145807:c.C1813T:p.L605L exonic Fam5c synonymous SNV uc007cxo.2:c.C1813T:p.L605L exonic ENSMUSG00000035131 synonymous SNV ENSMUST00000074622:c.C1813T:p.L605L 1qG1 NA NA chr1 148748759 CCTxTAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490538 0.490544 0.999988 54 0 0 31.507118 0.521739 0.02 -0.201679 11 12 310 327 60 60 0 0 CC 8.116665 27 0 748 0 KEEP + Brinp3 YES MNNG_3 chr1 152411064 152411064 C T intronic Hmcn1 NA NA intronic Hmcn1 NA NA intronic ENSMUSG00000066842 NA NA 1qG1 NA NA chr1 152411064 CACxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 59 0 0 19.068996 0.4 0.02 -0.184128 12 8 333 211 60 60 0 0 CC 9.325027 31 0 875 0 KEEP - Hmcn1 YES MNNG_3 chr1 156316220 156316220 C T exonic Cacna1e nonsynonymous SNV NM_009782:c.G3287A:p.G1096E exonic Cacna1e nonsynonymous SNV uc007dav.1:c.G3287A:p.G1096E exonic ENSMUSG00000004110 nonsynonymous SNV ENSMUST00000004214:c.G3287A:p.G1096E 1qG3 NA NA chr1 156316220 TCTxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 61 0 0 35.22437 0.583333 0.02 -0.209693 10 14 269 357 60 60 0 0 CC 9.625878 32 0 903 0 KEEP - Cacna1e YES MNNG_3 chr1 163657008 163657008 C T intergenic "Tnfsf18(dist=221587),Fasl(dist=53815)" NA NA upstream "AK181631,AK218564" NA NA ncRNA_exonic ENSMUSG00000040323 NA NA 1qH2.1 "Score=0.996293;Name=No.1645,chr3:95697895" NA chr1 163657008 TGGxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 170 0 9 73.840586 0.461538 0.02 1.027983 35 30 958 790 60 60 0 0 CC 24.063272 80 0 2242 0 KEEP NA Tnfsf18 YES MNNG_3 chr1 164606814 164606814 C T intronic Prrc2c NA NA intronic "Bat2d,Prrc2c" NA NA intronic ENSMUSG00000040225 NA NA 1qH2.1 NA NA chr1 164606814 GGTxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.908987 0.909069 0.999909 77 1 0 35.766857 0.380952 0.02 -0.376307 26 16 736 403 60 60 0 0 CC 7.219592 24 0 682 0 KEEP - Prrc2c YES MNNG_3 chr1 16561301 16561301 C T UTR3 Ube2w NA NA UTR3 Ube2w NA NA UTR3 ENSMUSG00000025939 NA NA 1qA3 NA NA chr1 16561301 GTGxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 178 2 0 57.699725 0.367647 0.02 0.992371 43 25 1188 652 60 60 0 0 CC 23.76163 79 0 2193 0 KEEP - Ube2w YES MNNG_3 chr1 167534790 167534790 C T exonic Mpzl1 nonsynonymous SNV NM_001001880:c.G556A:p.V186I exonic Mpzl1 nonsynonymous SNV uc007djh.1:c.G556A:p.V186I exonic ENSMUSG00000026566 nonsynonymous SNV ENSMUST00000068705:c.G556A:p.V186I 1qH2.3 NA NA chr1 167534790 GGAxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 160 0 0 59.507653 0.48 0.02 -0.43837 26 24 709 631 60 60 0 0 CC 24.956386 83 0 2269 0 KEEP - Mpzl1 YES MNNG_3 chr1 16760068 16760068 G A intergenic "Ly96(dist=60382),Jph1(dist=224953)" NA NA intergenic "Ly96(dist=60382),Jph1(dist=227477)" NA NA ncRNA_exonic ENSMUSG00000091020 NA NA 1qA3 NA NA chr1 16760068 ACAxCCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 74 2 0 23.557265 0.344828 0.02 -0.25428 19 10 523 269 60 60 0 0 GG 9.625932 32 0 906 0 KEEP NA Ly96 YES MNNG_3 chr1 173334062 173334062 C T exonic Arhgap30 nonsynonymous SNV NM_001005508:c.C815T:p.T272I exonic Arhgap30 nonsynonymous SNV uc007doh.2:c.C815T:p.T272I exonic ENSMUSG00000048865 nonsynonymous SNV ENSMUST00000056449:c.C815T:p.T272I 1qH3 NA NA chr1 173334062 ATAxTAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 123 0 0 65.820531 0.5 0.02 1.124118 27 27 733 692 60 60 0 0 CC 15.038986 50 0 1389 0 KEEP + Arhgap30 YES MNNG_3 chr1 173814779 173814779 C T exonic Cd84 nonsynonymous SNV NM_013489:c.C830T:p.S277F exonic Cd84 nonsynonymous SNV uc007dpf.2:c.C827T:p.S276F exonic ENSMUSG00000038147 nonsynonymous SNV ENSMUST00000042302:c.C830T:p.S277F 1qH3 NA NA chr1 173814779 AGTxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 167 0 0 59.175804 0.387097 0.02 1.053671 38 24 1069 657 60 60 0 0 CC 24.667981 82 0 2347 0 KEEP + Cd84 YES MNNG_3 chr1 174209090 174209090 C T exonic Atp1a2 synonymous SNV NM_178405:c.G2475A:p.E825E exonic Atp1a2 synonymous SNV uc007dqc.1:c.G2475A:p.E825E exonic ENSMUSG00000007097 synonymous SNV ENSMUST00000085913:c.G2475A:p.E825E 1qH3 NA NA chr1 174209090 ACTxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 115 0 0 90.661845 0.647059 0.02 1.150303 18 33 495 893 60 60 0 0 CC 14.72528 49 0 1390 0 KEEP - Atp1a2 YES MNNG_3 chr1 174253228 174253228 C T exonic Kcnj9 synonymous SNV NM_008429:c.G948A:p.E316E exonic Kcnj9 synonymous SNV uc007dqg.1:c.G948A:p.E316E exonic ENSMUSG00000038026 synonymous SNV ENSMUST00000062387:c.G948A:p.E316E 1qH3 NA NA chr1 174253228 CACxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 96 0 0 58.2953 0.536585 0.02 -0.359505 19 22 530 601 60 60 0 0 CC 12.926909 43 0 1194 0 KEEP - Kcnj9 YES MNNG_3 chr1 174299761 174299761 C T exonic Kcnj10 nonsynonymous SNV NM_001039484:c.C710T:p.T237I exonic Kcnj10 nonsynonymous SNV uc007dqj.1:c.C710T:p.T237I exonic ENSMUSG00000044708 nonsynonymous SNV ENSMUST00000056136:c.C710T:p.T237I 1qH3 NA NA chr1 174299761 TGAxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 184 0 0 57.653469 0.461538 0.02 1.132689 28 24 767 618 60 60 0 0 CC 29.761527 99 0 2711 0 KEEP + Kcnj10 YES MNNG_3 chr1 174489720 174489720 C T intronic Vsig8 NA NA intronic Vsig8 NA NA intronic ENSMUSG00000049598 NA NA 1qH3 NA NA chr1 174489720 CACxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.321303 0.322807 0.995343 36 0 0 23.973333 0.5 0.02 -0.157846 9 9 253 251 60 60 0 0 CC 4.211311 14 0 395 0 KEEP + Vsig8 YES MNNG_3 chr1 175392407 175392407 C T exonic Aim2 stopgain SNV NM_001013779:c.C784T:p.Q262X exonic Aim2 stopgain SNV uc011wws.1:c.C784T:p.Q262X exonic ENSMUSG00000037860 stopgain SNV ENSMUST00000038028:c.C112T:p.Q38X 1qH3 "Score=0.915562;Name=No.496,chr1:175642506" NA chr1 175392407 ATTxAGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 65 0 0 24.701785 0.392857 0.02 -0.245297 17 11 467 276 60 60 0 0 CC 8.423546 28 0 809 0 KEEP + Aim2 YES MNNG_3 chr1 175854117 175854117 A T exonic Ifi203 nonsynonymous SNV NM_008328:c.T1124A:p.V375E exonic Ifi203 nonsynonymous SNV uc007dse.1:c.T497A:p.V166E exonic ENSMUSG00000039997 nonsynonymous SNV ENSMUST00000081216:c.T1124A:p.V375E 1qH3 "Score=0.962806;Name=No.506,chr1:175682831" NA chr1 175854117 CACxCAT A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 499 2 0 91.085147 0.27972 0.02 2.11962 103 40 2718 1088 60 60 0 0 AA 85.666531 285 0 7672 0 KEEP - Ifi203 NO MNNG_3 chr1 176135522 176135522 C T exonic Spta1 nonsynonymous SNV NM_011465:c.C3013T:p.L1005F exonic Spna1 nonsynonymous SNV uc007dsw.2:c.C3013T:p.L1005F exonic ENSMUSG00000026532 nonsynonymous SNV ENSMUST00000027817:c.C3013T:p.L1005F 1qH3 NA NA chr1 176135522 CTGxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 102 0 0 97.000436 0.729167 0.02 -0.438381 13 35 364 925 60 60 0 0 CC 11.730861 39 0 1097 0 KEEP + Spta1 YES MNNG_3 chr1 177545044 177545044 C T exonic Fh1 nonsynonymous SNV NM_010209:c.G370A:p.V124I exonic Fh1 nonsynonymous SNV uc007dtn.2:c.G370A:p.V124I exonic ENSMUSG00000026526 nonsynonymous SNV ENSMUST00000027810:c.G370A:p.V124I 1qH4 NA NA chr1 177545044 CTAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 58 0 0 24.28904 0.416667 0.02 -0.210445 14 10 394 266 60 60 0 0 CC 7.519359 25 0 694 0 KEEP - Fh1 YES MNNG_3 chr1 177702354 177702354 C T exonic Wdr64 nonsynonymous SNV NM_029453:c.C1645T:p.P549S exonic Wdr64 nonsynonymous SNV uc011wxf.1:c.C307T:p.P103S exonic ENSMUSG00000026523 nonsynonymous SNV ENSMUST00000027805:c.C1615T:p.P539S 1qH4 NA NA chr1 177702354 ATGxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 76 0 0 32.377611 0.481481 0.02 -0.236734 14 13 387 343 60 60 0 0 CC 12.63055 42 0 1142 0 KEEP + Wdr64 YES MNNG_3 chr1 180034226 180034226 C T intergenic "Gm16432(dist=55804),Desi2(dist=83322)" NA NA ncRNA_exonic EG545391 NA NA exonic ENSMUSG00000066667 nonsynonymous SNV ENSMUST00000111149:c.C1048T:p.L350F 1qH4 "Score=0.946144;Name=No.519,chr1:179767643" NA chr1 180034226 GTCxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 50 1 0 10.957436 0.217391 0.02 -0.201697 18 5 512 138 60 37 0 0 CC 5.109775 17 0 477 0 KEEP NA Gm16432 YES MNNG_3 chr1 180260470 180260470 C T exonic Hnrnpu synonymous SNV NM_016805:c.G2103A:p.G701G exonic Hnrnpu synonymous SNV uc011wxl.1:c.G2103A:p.G701G exonic ENSMUSG00000039630 synonymous SNV ENSMUST00000037748:c.G2103A:p.G701G 1qH4 NA NA chr1 180260470 ATTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999997 67 0 0 20.383875 0.290323 0.02 -0.271837 22 9 620 242 60 60 0 0 CC 9.62584 32 0 902 0 KEEP - Hnrnpu YES MNNG_3 chr1 182104442 182104442 G A exonic Adck3 synonymous SNV NM_001163290:c.C661T:p.L221L exonic Adck3 synonymous SNV uc007dvx.2:c.C661T:p.L221L exonic ENSMUSG00000026489 synonymous SNV ENSMUST00000161300:c.C70T:p.L24L 1qH4 NA NA chr1 182104442 CCAxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 188 2 0 75.004878 0.422535 0.02 0.97475 41 30 1164 817 60 60 0 0 GG 26.756582 89 0 2521 0 KEEP - Adck3 YES MNNG_3 chr1 182109059 182109059 G A exonic Adck3 synonymous SNV NM_001163290:c.C534T:p.A178A exonic Adck3 synonymous SNV uc007dvx.2:c.C534T:p.A178A exonic ENSMUSG00000026489 synonymous SNV ENSMUST00000161632:c.C393T:p.A131A 1qH4 NA NA chr1 182109059 CCGxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 176 5 0 68.63604 0.373333 0.02 0.930926 47 28 1304 768 60 60 0 0 GG 21.37861 76 1 2073 13 KEEP - Adck3 YES MNNG_3 chr1 184544993 184544993 C T intronic Capn8 NA NA intronic Capn8 NA NA intronic ENSMUSG00000038599 NA NA 1qH5 NA NA chr1 184544993 CTGxACA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098977 0.099721 0.99254 20 0 0 8.983799 0.4 0.02 -0.087672 6 4 169 100 60 60 0 0 CC 2.707628 9 0 261 0 KEEP + Capn8 YES MNNG_3 chr1 186698317 186698317 G A intronic C130074G19Rik NA NA intronic C130074G19Rik NA NA intronic ENSMUSG00000039349 NA NA 1qH5 NA NA chr1 186698317 CAGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 77 1 0 24.044571 0.357143 0.02 -0.245531 18 10 508 272 60 60 0 0 GG 9.917729 33 0 924 0 KEEP - C130074G19Rik YES MNNG_3 chr1 191674328 191674328 G A exonic Ptpn14 nonsynonymous SNV NM_008976:c.G1492A:p.V498I exonic Ptpn14 nonsynonymous SNV uc007eaw.1:c.G475A:p.V159I exonic ENSMUSG00000026604 nonsynonymous SNV ENSMUST00000170736:c.G475A:p.V159I 1qH6 NA NA chr1 191674328 ACGxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290363 0.292001 0.994391 31 0 0 16.735878 0.411765 0.02 -0.149054 10 7 276 184 60 60 0 0 GG 3.909961 13 0 358 0 KEEP + Ptpn14 YES MNNG_3 chr1 192729013 192729013 G A intronic Rps6kc1 NA NA intronic Rps6kc1 NA NA intronic ENSMUSG00000089872 NA NA 1qH6 NA NA chr1 192729013 ACAxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 152 0 0 70.758001 0.459016 0.02 1.16056 33 28 932 757 60 60 0 0 GG 21.358444 71 0 2027 0 KEEP - Rps6kc1 YES MNNG_3 chr1 192988312 192988312 C T exonic Fam71a synonymous SNV NM_001109759:c.G12A:p.K4K exonic Fam71a synonymous SNV uc011wyr.1:c.G12A:p.K4K exonic ENSMUSG00000091017 synonymous SNV ENSMUST00000171798:c.G12A:p.K4K 1qH6 NA NA chr1 192988312 TTCxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 225 2 0 109.953262 0.472527 0.02 0.799561 48 43 1355 1168 60 60 0 0 CC 35.774412 119 0 3340 0 KEEP - Fam71a YES MNNG_3 chr1 193434218 193434218 G A intronic Ints7 NA NA intronic Ints7 NA NA intronic ENSMUSG00000037461 NA NA 1qH6 NA NA chr1 193434218 CGTxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.99986 36 0 0 13.062937 0.375 0.02 -0.140279 10 6 285 148 60 60 0 0 GG 5.715806 19 0 546 0 KEEP + Ints7 YES MNNG_3 chr1 194943830 194943830 G A exonic Diexf synonymous SNV NM_145415:c.C1386T:p.A462A exonic AA408296 synonymous SNV uc007edw.1:c.C1386T:p.A462A exonic ENSMUSG00000016181 synonymous SNV ENSMUST00000085555:c.C1386T:p.A462A 1qH6 NA NA chr1 194943830 GGAxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 73 0 0 41.964689 0.551724 0.02 -0.254274 13 16 360 430 60 60 0 0 GG 9.926197 33 0 924 0 KEEP - Diexf YES MNNG_3 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457707 0.457757 0.999892 54 2 0 70.378036 1 0.02 -0.192899 0 22 0 599 0 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO MNNG_3 chr1 20798769 20798769 G A intronic Mcm3 NA NA intronic Mcm3 NA NA intronic ENSMUSG00000041859 NA NA 1qA4 NA NA chr1 20798769 AAGxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 151 0 0 79.935241 0.516667 0.02 0.973974 29 31 800 832 60 60 0 0 GG 22.255592 74 0 2061 0 KEEP - Mcm3 YES MNNG_3 chr1 33919673 33919673 C T intronic Bend6 NA NA intronic Bend6 NA NA intronic ENSMUSG00000042182 NA NA 1qB NA NA chr1 33919673 CATxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 131 0 0 62.574022 0.545455 0.02 -0.385814 20 24 565 643 60 60 0 0 CC 19.808184 66 0 1854 0 KEEP - Bend6 YES MNNG_3 chr1 36203444 36203444 G A intronic Uggt1 NA NA intronic "Ugcgl1,Uggt1" NA NA intronic ENSMUSG00000037470 NA NA 1qB NA NA chr1 36203444 CAGxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 53 1 0 30.406246 0.521739 0.02 -0.201647 11 12 299 316 60 60 0 0 GG 6.905571 23 0 617 0 KEEP - Uggt1 YES MNNG_3 chr1 36219193 36219193 C T exonic Uggt1 nonsynonymous SNV NM_198899:c.G3310A:p.A1104T exonic Uggt1 nonsynonymous SNV uc007apq.2:c.G2344A:p.A782T exonic ENSMUSG00000037470 nonsynonymous SNV ENSMUST00000046875:c.G3310A:p.A1104T 1qB NA NA chr1 36219193 CAGxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 161 0 0 59.821167 0.416667 0.02 1.071286 35 25 969 656 60 60 0 0 CC 21.921278 73 0 1990 0 KEEP - Uggt1 YES MNNG_3 chr1 36268292 36268292 C T exonic Uggt1 nonsynonymous SNV NM_198899:c.G736A:p.V246M exonic Uggt1 nonsynonymous SNV uc007app.2:c.G736A:p.V246M exonic ENSMUSG00000037470 nonsynonymous SNV ENSMUST00000046875:c.G736A:p.V246M 1qB NA NA chr1 36268292 CCAxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 262 0 0 103.939638 0.461538 0.02 0.799954 49 42 1357 1112 60 60 0 0 CC 34.874544 116 0 3225 0 KEEP - Uggt1 YES MNNG_3 chr1 36405646 36405646 C T intronic Kansl3 NA NA intronic "4632411B12Rik,Kiaa1310" NA NA intronic ENSMUSG00000010453 NA NA 1qB NA NA chr1 36405646 CCTxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 100 2 0 48.972463 0.463415 0.02 -0.35937 22 19 604 522 60 60 0 0 CC 15.631796 52 0 1456 0 KEEP - Kansl3 YES MNNG_3 chr1 36589479 36589479 C T exonic Ankrd23 nonsynonymous SNV NM_153502:c.G376A:p.A126T exonic Ankrd23 nonsynonymous SNV uc007aql.1:c.G376A:p.A126T exonic ENSMUSG00000067653 nonsynonymous SNV ENSMUST00000045120:c.G34A:p.A12T 1qB NA NA chr1 36589479 GGGxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 200 2 0 98.185506 0.481928 0.02 0.772543 43 40 1185 1041 60 60 0 0 CC 26.142897 87 0 2375 0 KEEP - Ankrd23 YES MNNG_3 chr1 36750029 36750029 C T intronic Cox5b NA NA intronic Cox5b NA NA intronic ENSMUSG00000061518 NA NA 1qB NA NA chr1 36750029 CGTxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 39 0 0 26.296292 0.555556 0.02 -0.157834 8 10 229 269 60 60 0 0 CC 5.715631 19 0 542 0 KEEP + Cox5b YES MNNG_3 chr1 40581233 40581233 G A intronic Il18rap NA NA intronic Il18rap NA NA intronic ENSMUSG00000026068 NA NA 1qB NA NA chr1 40581233 ATGxGTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 44 0 0 22.596673 0.666667 0.02 -0.105226 4 8 111 221 60 60 0 0 GG 8.42195 28 0 777 0 KEEP + Il18rap YES MNNG_3 chr1 42956378 42956378 C T exonic Mrps9 nonsynonymous SNV NM_023514:c.C895T:p.P299S exonic Mrps9 nonsynonymous SNV uc007ava.2:c.C895T:p.P299S exonic ENSMUSG00000060679 nonsynonymous SNV ENSMUST00000171957:c.C409T:p.P137S 1qB NA NA chr1 42956378 TTTxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 106 0 0 45.128783 0.45 0.02 -0.350741 22 18 615 485 60 60 0 0 CC 14.439428 48 0 1366 0 KEEP + Mrps9 YES MNNG_3 chr1 45493170 45493170 G A intronic Col5a2 NA NA intronic Col5a2 NA NA intronic ENSMUSG00000026042 NA NA 1qC1.1 NA NA chr1 45493170 GATxCTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 78 0 0 43.799747 0.545455 0.02 -0.289299 15 18 421 451 60 60 0 0 GG 11.732992 39 0 1132 0 KEEP - Col5a2 YES MNNG_3 chr1 52135348 52135348 C T exonic Stat4 synonymous SNV NM_011487:c.C793T:p.L265L exonic Stat4 synonymous SNV uc007axx.1:c.C793T:p.L265L exonic ENSMUSG00000062939 synonymous SNV ENSMUST00000027277:c.C793T:p.L265L 1qC1.1 NA NA chr1 52135348 CTAxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 32 0 0 19.019114 0.470588 0.02 -0.148778 9 8 228 203 60 60 0 0 CC 4.210618 14 0 384 0 KEEP + Stat4 YES MNNG_3 chr1 53118976 53118976 C T exonic Mstn nonsynonymous SNV NM_010834:c.C367T:p.P123S exonic Mstn nonsynonymous SNV uc007ayt.1:c.C367T:p.P123S exonic ENSMUSG00000026100 nonsynonymous SNV ENSMUST00000027269:c.C367T:p.P123S 1qC1.1 NA NA chr1 53118976 ATGxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322764 0.322807 0.999869 43 0 0 26.19671 0.555556 0.02 -0.15783 8 10 223 268 60 60 0 0 CC 6.316519 21 0 585 0 KEEP + Mstn YES MNNG_3 chr1 55064380 55064380 C T exonic Sf3b1 nonsynonymous SNV NM_031179:c.G848A:p.G283D exonic Sf3b1 nonsynonymous SNV uc007azy.1:c.G410A:p.G137D exonic ENSMUSG00000025982 nonsynonymous SNV ENSMUST00000027127:c.G848A:p.G283D 1qC1.2 NA NA chr1 55064380 GCAxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 121 0 0 73.647063 0.508475 0.02 1.071469 29 30 769 771 60 60 0 0 CC 16.147061 54 0 1420 0 KEEP - Sf3b1 YES MNNG_3 chr1 59226843 59226843 C T exonic Als2 nonsynonymous SNV NM_001159948:c.G4400A:p.S1467N exonic Als2 nonsynonymous SNV uc007bdl.2:c.G1205A:p.S402N exonic ENSMUSG00000026024 nonsynonymous SNV ENSMUST00000027178:c.G4400A:p.S1467N 1qC1.3 NA NA chr1 59226843 GAAxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522089 0.522161 0.999863 46 0 0 21.897148 0.375 0.02 -0.210459 15 9 427 245 60 60 0 0 CC 6.01674 20 0 576 0 KEEP - Als2 YES MNNG_3 chr1 60826621 60826621 C T exonic Cd28 nonsynonymous SNV NM_007642:c.C649T:p.R217C exonic Cd28 nonsynonymous SNV uc007bew.2:c.C649T:p.R217C exonic ENSMUSG00000026012 nonsynonymous SNV ENSMUST00000027165:c.C649T:p.R217C 1qC2 NA NA chr1 60826621 TACxGCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 144 2 0 48.509013 0.384615 0.02 1.239813 32 20 759 540 60 60 0 0 CC 21.860385 73 0 1738 0 KEEP + Cd28 YES MNNG_3 chr1 63723810 63723810 C T exonic Dytn synonymous SNV NM_001081658:c.G177A:p.V59V exonic Dytn synonymous SNV uc007bgi.1:c.G177A:p.V59V exonic ENSMUSG00000069085 synonymous SNV ENSMUST00000090313:c.G177A:p.V59V 1qC2 NA NA chr1 63723810 CTGxACA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260929 0.260965 0.999863 40 0 0 16.374458 0.4375 0.02 -0.140279 9 7 251 178 60 60 0 0 CC 6.015216 20 0 552 0 KEEP - Dytn YES MNNG_3 chr1 67203480 67203480 C T exonic Cps1 nonsynonymous SNV NM_001080809:c.C923T:p.S308F exonic Cps1 nonsynonymous SNV uc007biy.1:c.C923T:p.S308F exonic ENSMUSG00000025991 nonsynonymous SNV ENSMUST00000027144:c.C923T:p.S308F 1qC3 NA NA chr1 67203480 AATxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 48 2 0 23.372758 0.5 0.02 -0.157835 9 9 251 245 60 60 0 0 CC 6.016343 20 0 568 0 KEEP + Cps1 YES MNNG_3 chr1 67205416 67205416 T A intronic Cps1 NA NA intronic Cps1 NA NA intronic ENSMUSG00000025991 NA NA 1qC3 NA NA chr1 67205416 TTCxCCC T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 60 0 0 21.806973 0.391304 0.02 -0.201666 14 9 384 242 60 60 0 0 TT 9.625691 32 0 899 0 KEEP + Cps1 NO MNNG_3 chr1 71687832 71687832 C T exonic Fn1 synonymous SNV NM_001276408:c.G1287A:p.R429R exonic Fn1 synonymous SNV uc007bju.1:c.G1287A:p.R429R exonic ENSMUSG00000026193 synonymous SNV ENSMUST00000055226:c.G1287A:p.R429R 1qC3 NA NA chr1 71687832 ATTxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 123 0 0 84.937668 0.551724 0.02 1.088878 26 32 721 870 60 60 0 0 CC 16.53107 55 0 1532 0 KEEP - Fn1 YES MNNG_3 chr1 72347672 72347672 C T exonic Tmem169 nonsynonymous SNV NM_175564:c.C686T:p.A229V exonic Tmem169 nonsynonymous SNV uc007bkk.1:c.C686T:p.A229V exonic ENSMUSG00000026188 nonsynonymous SNV ENSMUST00000027380:c.C686T:p.A229V 1qC3 NA NA chr1 72347672 ATGxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.997163 0.997163 1 179 1 0 78.033199 0.464789 0.02 0.877639 38 33 1047 836 60 60 0 0 CC 24.04923 80 0 2177 0 KEEP + Tmem169 YES MNNG_3 chr1 73974546 73974546 C T exonic Tns1 nonsynonymous SNV NM_027884:c.G3665A:p.G1222E exonic Tns1 nonsynonymous SNV uc007blg.2:c.G272A:p.G91E exonic ENSMUSG00000055322 nonsynonymous SNV ENSMUST00000171899:c.G959A:p.G320E 1qC3 NA NA chr1 73974546 CCCxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 120 0 0 44.356867 0.409091 0.02 -0.385813 26 18 723 487 60 60 0 0 CC 17.382257 58 0 1578 0 KEEP - Tns1 YES MNNG_3 chr1 74574141 74574141 C T intronic "Rqcd1,Usp37" NA NA intronic "Rqcd1,Usp37" NA NA intronic "ENSMUSG00000026174,ENSMUSG00000033364" NA NA 1qC3 NA NA chr1 74574141 CCCxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 134 0 0 48.242127 0.44186 0.02 -0.377038 24 19 666 520 60 60 0 0 CC 21.35332 71 0 1960 0 KEEP NA Rqcd1 YES MNNG_3 chr1 75133892 75133892 C T intronic Cnppd1 NA NA intronic 1810031K17Rik NA NA intronic ENSMUSG00000033159 NA NA 1qC3 NA NA chr1 75133892 CCCxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 104 1 0 52.215234 0.47619 0.02 -0.368293 22 20 612 553 60 60 0 0 CC 14.135944 47 0 1310 0 KEEP - Cnppd1 YES MNNG_3 chr1 75209793 75209793 C T exonic Stk16 nonsynonymous SNV NM_001277992:c.C647T:p.T216I exonic Stk16 nonsynonymous SNV uc007boh.2:c.C647T:p.T216I exonic ENSMUSG00000026201 nonsynonymous SNV ENSMUST00000027401:c.C647T:p.T216I 1qC3 NA NA chr1 75209793 GGAxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.611079 0.612407 0.997832 48 0 0 29.772326 0.444444 0.02 -0.236594 15 12 404 321 60 60 0 0 CC 4.813079 16 0 456 0 KEEP + Stk16 YES MNNG_3 chr1 75388397 75388397 A G exonic Speg nonsynonymous SNV NM_001085370:c.A128G:p.E43G exonic Speg nonsynonymous SNV uc007bpc.1:c.A128G:p.E43G exonic ENSMUSG00000026207 nonsynonymous SNV ENSMUST00000087122:c.A2333G:p.E778G 1qC4 NA NA chr1 75388397 CTGxAGG A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 156 0 0 85.023576 0.477612 0.02 1.197269 35 32 943 899 60 60 0 0 AA 21.053124 70 0 1926 0 KEEP + Speg NO MNNG_3 chr1 75506588 75506588 C T exonic Inha synonymous SNV NM_010564:c.C951T:p.P317P exonic Inha synonymous SNV uc007bps.1:c.C951T:p.P317P exonic ENSMUSG00000032968 synonymous SNV ENSMUST00000037330:c.C951T:p.P317P 1qC4 NA NA chr1 75506588 GCCxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 135 0 0 65.234543 0.42623 0.02 1.062688 35 26 947 709 60 60 0 0 CC 18.601838 62 0 1698 0 KEEP + Inha YES MNNG_3 chr1 84722026 84722026 C T exonic Trip12 synonymous SNV NM_133975:c.G5826A:p.E1942E exonic Trip12 synonymous SNV uc007bsy.1:c.G5826A:p.E1942E exonic ENSMUSG00000026219 synonymous SNV ENSMUST00000027421:c.G5826A:p.E1942E 1qC5 NA NA chr1 84722026 CTGxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.259062 0.260965 0.992708 29 0 0 26.467871 0.625 0.02 -0.140286 6 10 171 263 60 60 0 0 CC 3.0081 10 0 283 0 KEEP - Trip12 YES MNNG_3 chr1 84903831 84903831 C T UTR3 Slc16a14 NA NA UTR3 Slc16a14 NA NA UTR3 ENSMUSG00000026220 NA NA 1qC5 NA NA chr1 84903831 AACxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 75 2 0 34.473338 0.5 0.02 -0.227978 13 13 358 361 60 60 0 0 CC 13.232344 44 0 1216 0 KEEP - Slc16a14 YES MNNG_3 chr1 85113732 85113732 C T intergenic "A530032D15Rik(dist=7304),Gm7609(dist=82454)" NA NA intronic "A530032D15Rik,C130026I21Rik,Csprs" NA NA ncRNA_intronic ENSMUSG00000090128 NA NA 1qC5 "Score=0.987585;Name=No.311,chr1:87343678" NA chr1 85113732 AATxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 77 0 17 16.763301 0.235294 0.02 -0.298127 26 8 741 210 60 60 0 0 CC 10.519086 35 0 977 0 KEEP NA A530032D15Rik YES MNNG_3 chr1 87392917 87392917 G T intergenic "NONE(dist=NONE),Sp110(dist=80558)" NA NA intergenic "BC108341(dist=2053766),Csprs(dist=39927)" NA NA intergenic "ENSMUSG00000090189(dist=11200),ENSMUSG00000089714(dist=14791)" NA NA 1qC5 "Score=0.981803;Name=No.314,chr1:85147246" NA chr1 87392917 AAGxAGG G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 108 2 11 17.280714 0.333333 0.02 -0.210428 16 8 452 201 60 52 0 0 GG 18.649275 62 0 1746 0 KEEP NA NONE NO MNNG_3 chr1 87615595 87615595 C T intronic A630001G21Rik NA NA intronic A630001G21Rik NA NA intronic ENSMUSG00000052760 NA NA 1qC5 NA NA chr1 87615595 ATCxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 153 3 0 52.334121 0.381818 0.02 1.115047 34 21 954 582 60 60 0 0 CC 22.857933 76 0 2134 0 KEEP - A630001G21Rik YES MNNG_3 chr1 87744043 87744043 C T exonic Cab39 nonsynonymous SNV NM_133781:c.C686T:p.S229L exonic Cab39 nonsynonymous SNV uc007bum.2:c.C686T:p.S229L exonic ENSMUSG00000036707 nonsynonymous SNV ENSMUST00000082149:c.C686T:p.S229L 1qC5 NA NA chr1 87744043 AGTxACT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.76078 0.760887 0.999859 62 2 0 36.675364 0.454545 0.02 -0.289349 18 15 513 394 60 60 0 0 CC 5.414938 18 0 516 0 KEEP + Cab39 YES MNNG_3 chr1 88247771 88247771 C T ncRNA_exonic Snora75 NA NA ncRNA_exonic Snora75 NA NA ncRNA_exonic ENSMUSG00000064837 NA NA 1qD NA NA chr1 88247771 ATAxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 69 0 0 29.082839 0.351351 0.02 -0.324395 24 13 658 333 60 60 0 0 CC 8.420624 28 0 760 0 KEEP - Snora75 YES MNNG_3 chr1 89092233 89092233 C T intronic Chrnd NA NA intronic Chrnd NA NA intronic ENSMUSG00000026251 NA NA 1qD NA NA chr1 89092233 CAGxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 127 1 0 51.132132 0.4375 0.02 -0.429483 27 21 735 554 60 60 0 0 CC 18.634221 62 0 1730 0 KEEP + Chrnd YES MNNG_3 chr1 89740770 89740770 C T intronic Sag NA NA intronic Sag NA NA intronic ENSMUSG00000056055 NA NA 1qD NA NA chr1 89740770 TGTxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 219 4 0 81.838883 0.470588 0.02 1.001057 36 32 1026 870 60 60 0 0 CC 36.089982 120 0 3438 0 KEEP + Sag YES MNNG_3 chr1 89826288 89826288 C T intronic Dgkd NA NA intronic Dgkd NA NA intronic ENSMUSG00000070738 NA NA 1qD NA NA chr1 89826288 TGGxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099658 0.099721 0.999366 32 2 0 6.578465 0.3 0.02 -0.087679 7 3 192 78 60 60 0 0 CC 5.11304 17 0 468 0 KEEP + Dgkd YES MNNG_3 chr1 89838971 89838971 C T exonic Dgkd nonsynonymous SNV NM_177646:c.C3587T:p.T1196I exonic "Dgkd,mKIAA0145" nonsynonymous SNV uc007bxu.2:c.C941T:p.T314I exonic ENSMUSG00000070738 nonsynonymous SNV ENSMUST00000027517:c.C3587T:p.T1196I 1qD NA NA chr1 89838971 TGAxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 204 0 0 82.879236 0.485714 0.02 1.082288 36 34 950 877 60 60 0 0 CC 27.661896 92 0 2504 0 KEEP + Dgkd YES MNNG_3 chr1 89880366 89880366 C T exonic Usp40 nonsynonymous SNV NM_001033291:c.G1513A:p.E505K exonic Usp40 nonsynonymous SNV uc007bxw.1:c.G1513A:p.E505K exonic ENSMUSG00000005501 nonsynonymous SNV ENSMUST00000040783:c.G1513A:p.E505K 1qD NA NA chr1 89880366 TTTxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 164 0 0 105.643489 0.6 0.02 1.028122 26 39 708 1060 60 60 0 0 CC 22.559988 75 0 2121 0 KEEP - Usp40 YES MNNG_3 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 371 0 0 18.724858 0.063953 0.02 3.632813 161 11 4031 312 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO MNNG_3 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 384 0 0 22.060986 0.074713 0.02 3.266222 161 13 4518 359 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP NA Ugt1a1 YES MNNG_3 chr1 90112835 90112835 C T exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1207T:p.R403C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1198T:p.R400C exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1201T:p.R401C 1qD NA NA chr1 90112835 AAGxGCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 146 0 0 10.106301 0.1 0.02 0.965189 54 6 1469 157 60 60 0 0 CC 18.044386 60 0 1644 0 KEEP NA Ugt1a1 YES MNNG_3 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 171 0 0 21.205367 0.162162 0.02 0.949056 62 12 1517 297 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP NA Ugt1a1 NO MNNG_3 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 185 0 0 22.817626 0.138298 0.02 0.579055 81 13 2292 330 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO MNNG_3 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 340 1 0 26.723423 0.102941 0.02 3.674392 122 14 3122 396 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO MNNG_3 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 363 1 0 25.084651 0.101266 0.02 2.466924 142 16 3926 399 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a YES MNNG_3 chr1 90146940 90146940 T G exonic Mroh2a synonymous SNV NM_001281466:c.T3171G:p.A1057A exonic Heatr7b1 synonymous SNV uc011wov.1:c.T3180G:p.A1060A exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.T3171G:p.A1057A 1qD NA NA chr1 90146940 TGCxTCC T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 317 2 0 11.021113 0.068182 0.02 2.117724 123 9 3383 209 60 60 0 0 TT 35.191019 117 0 3260 0 KEEP + Mroh2a NO MNNG_3 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 249 0 0 17.539517 0.090909 0.02 2.03722 100 10 2794 273 70 60 0 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a YES MNNG_3 chr1 90147949 90147949 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3319T:p.R1107W exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3328T:p.R1110W exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3319T:p.R1107W 1qD NA NA chr1 90147949 ATGxGGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 223 0 0 15.416297 0.092784 0.02 1.934597 88 9 2003 241 70 60 0 0 CC 28.221001 94 0 2168 0 KEEP + Mroh2a YES MNNG_3 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 183 0 0 21.506571 0.123596 0.02 0.817201 78 11 2025 307 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO MNNG_3 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 75 0 0 18.537606 0.28125 0.02 -0.280563 23 9 639 225 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a YES MNNG_3 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 218 0 0 14.084315 0.070312 0.02 2.047144 119 9 3056 239 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP - Hjurp NO MNNG_3 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 362 2 0 12.610887 0.063492 0.02 2.065072 118 8 2905 217 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP NA A730008H23Rik NO MNNG_3 chr1 92503255 92503255 C T intronic Cops8 NA NA intronic Cops8 NA NA intronic ENSMUSG00000034432 NA NA 1qD NA NA chr1 92503255 TTCxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 87 0 0 39.653509 0.535714 0.02 -0.245525 13 15 366 409 60 60 0 0 CC 12.031916 40 0 1137 0 KEEP + Cops8 YES MNNG_3 chr1 93698351 93698351 C T exonic Twist2 nonsynonymous SNV NM_007855:c.C148T:p.R50C exonic Twist2 nonsynonymous SNV uc007cbd.1:c.C148T:p.R50C exonic ENSMUSG00000007805 nonsynonymous SNV ENSMUST00000007949:c.C148T:p.R50C 1qD NA NA chr1 93698351 AAGxGCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036498 0.036766 0.992708 16 0 0 9.844772 0.666667 0.02 -0.052585 2 4 56 96 60 60 0 0 CC 3.006957 10 0 268 0 KEEP + Twist2 YES MNNG_3 chr1 94773674 94773674 C T exonic Ankmy1 nonsynonymous SNV NM_172850:c.G2473A:p.D825N exonic Ankmy1 nonsynonymous SNV uc007cbt.1:c.G2473A:p.D825N exonic ENSMUSG00000034212 nonsynonymous SNV ENSMUST00000045770:c.G2185A:p.D729N 1qD NA NA chr1 94773674 CATxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 98 0 0 44.892143 0.461538 0.02 -0.350724 21 18 584 480 60 60 0 0 CC 13.224468 44 0 1211 0 KEEP - Ankmy1 YES MNNG_3 chr1 94816252 94816252 C T exonic Rnpepl1 synonymous SNV NM_181405:c.C1983T:p.R661R exonic Rnpepl1 synonymous SNV uc007cbw.2:c.C1983T:p.R661R exonic ENSMUSG00000026269 synonymous SNV ENSMUST00000027487:c.C1305T:p.R435R 1qD NA NA chr1 94816252 GCGxAGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.998696 0.998696 1 160 0 0 86.527408 0.493333 0.02 0.73908 38 37 1016 915 60 60 0 0 CC 21.642218 72 0 1999 0 KEEP + Rnpepl1 YES MNNG_3 chr1 94937133 94937133 C A intronic Kif1a NA NA intronic Kif1a NA NA intronic ENSMUSG00000014602 NA NA 1qD NA NA chr1 94937133 AACxACA C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 179 1 0 67.716682 0.405797 0.02 0.966034 41 28 1140 746 60 60 0 0 CC 24.361352 81 0 2265 0 KEEP - Kif1a NO MNNG_3 chr1_random 1126539 1126539 C T intergenic "Hhipl2(dist=716138),NONE(dist=NONE)" NA NA intronic Sp110 NA NA intronic ENSMUSG00000079808 NA NA NA "Score=0.989953;Name=No.74953,chr8_random:64776" NA chr1_random 1126539 CTCxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1438 39 115 52.809565 0.083799 0.02 8.122525 328 30 9154 832 60 60 0 0 CC 252.04675 838 0 23642 0 KEEP NA Hhipl2 YES MNNG_3 chr1_random 1134637 1134637 C T intergenic "Hhipl2(dist=724236),NONE(dist=NONE)" NA NA exonic Sp110 nonsynonymous SNV uc008idk.1:c.G262A:p.V88I exonic ENSMUSG00000079808 nonsynonymous SNV ENSMUST00000115924:c.G262A:p.V88I NA "Score=0.989953;Name=No.74953,chr8_random:64776" NA chr1_random 1134637 TGAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 511 2 60 22.634609 0.083832 0.02 3.319948 153 14 4141 368 60 36 0 0 CC 80.240418 267 0 7296 0 KEEP NA Hhipl2 YES MNNG_3 chr2 101537426 101537426 G A exonic Traf6 nonsynonymous SNV NM_009424:c.G1363A:p.E455K exonic Traf6 nonsynonymous SNV uc008lhn.1:c.G1363A:p.E455K exonic ENSMUSG00000027164 nonsynonymous SNV ENSMUST00000004949:c.G1363A:p.E455K 2qE2 NA NA chr2 101537426 CACxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 63 0 0 21.92902 0.375 0.02 -0.2181 15 9 351 245 60 60 0 0 GG 9.018733 30 0 799 0 KEEP + Traf6 YES MNNG_3 chr2 103114231 103114231 G A exonic Ehf nonsynonymous SNV NM_007914:c.C455T:p.P152L exonic Ehf nonsynonymous SNV uc008lio.1:c.C455T:p.P152L exonic ENSMUSG00000012350 nonsynonymous SNV ENSMUST00000111174:c.C455T:p.P152L 2qE2 NA NA chr2 103114231 CTGxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.71725 0.717315 0.999909 59 0 0 26.687475 0.37931 0.02 -0.27182 18 11 498 298 60 60 0 0 GG 7.173172 24 0 647 0 KEEP - Ehf YES MNNG_3 chr2 104525576 104525576 G A exonic Tcp11l1 synonymous SNV NM_177190:c.C1098T:p.D366D exonic Tcp11l1 synonymous SNV uc008lkc.1:c.C873T:p.D291D exonic ENSMUSG00000027175 synonymous SNV ENSMUST00000028597:c.C1098T:p.D366D 2qE2 NA NA chr2 104525576 AAAxTCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.948402 0.948402 1 154 1 0 71.183551 0.583333 0.02 -0.420796 20 28 544 720 60 60 0 0 GG 23.761596 79 0 2197 0 KEEP - Tcp11l1 YES MNNG_3 chr2 106809607 106809607 G A exonic Arl14ep synonymous SNV NM_001025102:c.C45T:p.D15D exonic 2700007P21Rik synonymous SNV uc008llq.1:c.C45T:p.D15D exonic ENSMUSG00000027122 synonymous SNV ENSMUST00000028536:c.C45T:p.D15D 2qE3 NA NA chr2 106809607 GCAxTCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 112 0 0 42.785843 0.418605 0.02 -0.377017 25 18 697 469 60 60 0 0 GG 17.445929 58 0 1625 0 KEEP - Arl14ep YES MNNG_3 chr2 111208854 111208854 G A exonic Olfr1283 nonsynonymous SNV NM_207236:c.G64A:p.E22K exonic Olfr1283 nonsynonymous SNV uc008lnk.1:c.G64A:p.E22K exonic ENSMUSG00000064266 nonsynonymous SNV ENSMUST00000082167:c.G64A:p.E22K 2qE3 "Score=0.946331;Name=No.75321,chr2:111286025" NA chr2 111208854 AAGxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 239 0 1 127.678188 0.505155 0.02 0.747044 48 49 1324 1335 60 60 0 0 GG 35.127241 117 0 3257 0 KEEP + Olfr1283 YES MNNG_3 chr2 11157633 11157633 T G intronic Prkcq NA NA intronic Prkcq NA NA intronic ENSMUSG00000026778 NA NA 2qA1 NA NA chr2 11157633 CTTxTTC T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 136 2 0 41.313109 0.333333 0.02 1.23925 34 17 936 473 60 60 0 0 TT 18.628605 62 0 1707 0 KEEP + Prkcq NO MNNG_3 chr2 111713732 111713732 G A exonic Olfr1305 synonymous SNV NM_146401:c.C279T:p.S93S exonic Olfr1305 synonymous SNV uc008lob.1:c.C279T:p.S93S exonic ENSMUSG00000074955 synonymous SNV ENSMUST00000099608:c.C279T:p.S93S 2qE3 NA NA chr2 111713732 AAAxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 111 0 0 56.314921 0.458333 0.02 -0.420874 26 22 724 602 60 60 0 0 GG 15.341034 51 0 1443 0 KEEP - Olfr1305 YES MNNG_3 chr2 112503506 112503506 A C intronic Ryr3 NA NA intronic Ryr3 NA NA intronic ENSMUSG00000057378 NA NA 2qE3 NA NA chr2 112503506 TTAxGGA A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 129 0 0 54.910685 0.5 0.02 1.044394 26 26 714 582 60 60 0 0 AA 19.847316 66 0 1846 0 KEEP - Ryr3 NO MNNG_3 chr2 112596735 112596735 G A exonic Ryr3 nonsynonymous SNV NM_177652:c.C8120T:p.T2707I exonic Ryr3 nonsynonymous SNV uc008lpg.1:c.C8120T:p.T2707I exonic ENSMUSG00000057378 nonsynonymous SNV ENSMUST00000080673:c.C8060T:p.T2687I 2qE3 NA NA chr2 112596735 TTGxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 70 0 0 25.623634 0.4 0.02 -0.262593 18 12 491 287 60 60 0 0 GG 9.019832 30 0 809 0 KEEP - Ryr3 YES MNNG_3 chr2 113873872 113873872 G A exonic Actc1 nonsynonymous SNV NM_009608:c.C977T:p.T326I exonic Actc1 nonsynonymous SNV uc008lpz.1:c.C977T:p.T326I exonic ENSMUSG00000068614 nonsynonymous SNV ENSMUST00000090269:c.C977T:p.T326I 2qE4 NA NA chr2 113873872 ATGxTGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 97 0 0 58.828488 0.533333 0.02 -0.394466 21 24 578 609 60 60 0 0 GG 11.729494 39 0 1075 0 KEEP - Actc1 YES MNNG_3 chr2 113938341 113938341 G A exonic Aqr synonymous SNV NM_009702:c.C3486T:p.P1162P exonic Aqr synonymous SNV uc008lqd.2:c.C3486T:p.P1162P exonic ENSMUSG00000040383 synonymous SNV ENSMUST00000043160:c.C3486T:p.P1162P 2qE4 NA NA chr2 113938341 ATGxGGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229152 0.229173 0.999909 46 0 0 21.113252 0.533333 0.02 -0.13153 7 8 195 218 60 60 0 0 GG 6.916613 23 0 630 0 KEEP - Aqr YES MNNG_3 chr2 118276067 118276067 G A exonic Eif2ak4 nonsynonymous SNV NM_001177806:c.G2842A:p.A948T exonic Eif2ak4 nonsynonymous SNV uc008lrz.1:c.G775A:p.A259T exonic ENSMUSG00000005102 nonsynonymous SNV ENSMUST00000110869:c.G775A:p.A259T 2qE5 NA NA chr2 118276067 ACAxCCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 186 0 0 103.082226 0.518987 0.02 0.904715 38 41 1064 1073 60 60 0 0 GG 24.365096 81 0 2298 0 KEEP + Eif2ak4 YES MNNG_3 chr2 118640016 118640016 G A exonic Knstrn synonymous SNV NM_026412:c.G180A:p.E60E exonic "D2Ertd750e,Gm14090" synonymous SNV uc008lst.2:c.G180A:p.E60E exonic ENSMUSG00000027331 synonymous SNV ENSMUST00000028803:c.G27A:p.E9E 2qE5 NA NA chr2 118640016 AGAxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.639096 0.641347 0.99649 52 3 0 33.300993 0.464286 0.02 -0.245531 15 13 426 355 60 60 0 0 GG 4.510622 15 0 412 0 KEEP + Knstrn YES MNNG_3 chr2 119063565 119063565 G A exonic Spint1 nonsynonymous SNV NM_016907:c.G43A:p.G15S exonic Spint1 nonsynonymous SNV uc008ltk.1:c.G43A:p.G15S exonic ENSMUSG00000027315 nonsynonymous SNV ENSMUST00000110817:c.G43A:p.G15S 2qE5 NA NA chr2 119063565 GTCxGCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099257 0.099721 0.995343 27 0 0 9.289326 0.4 0.02 -0.087514 6 4 132 103 60 60 0 0 GG 4.205616 14 0 341 0 KEEP + Spint1 YES MNNG_3 chr2 119843531 119843531 G A exonic Mapkbp1 nonsynonymous SNV NM_011941:c.G1825A:p.V609I exonic Mapkbp1 nonsynonymous SNV uc008luw.2:c.G1825A:p.V609I exonic ENSMUSG00000033902 nonsynonymous SNV ENSMUST00000066058:c.G1825A:p.V609I 2qE5 NA NA chr2 119843531 GTGxTAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 130 0 0 78.800385 0.532258 0.02 0.94914 29 33 790 818 60 60 0 0 GG 17.439922 58 0 1582 0 KEEP + Mapkbp1 YES MNNG_3 chr2 119995862 119995862 G A exonic Pla2g4e nonsynonymous SNV NM_177845:c.C2129T:p.A710V exonic Pla2g4e nonsynonymous SNV uc008lve.1:c.C1400T:p.A467V exonic ENSMUSG00000050211 nonsynonymous SNV ENSMUST00000090071:c.C2129T:p.A710V 2qE5 NA NA chr2 119995862 AACxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909006 0.909069 0.999931 71 0 0 63.607248 0.595238 0.02 -0.376878 17 25 443 640 60 60 0 0 GG 7.516228 25 0 657 0 KEEP - Pla2g4e YES MNNG_3 chr2 120271997 120271997 G A intronic Ganc NA NA intronic Ganc NA NA intronic ENSMUSG00000062646 NA NA 2qE5 NA NA chr2 120271997 CGAxTGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 81 0 0 43.775694 0.485714 0.02 -0.324441 18 17 509 462 60 60 0 0 GG 12.033291 40 0 1149 0 KEEP + Ganc YES MNNG_3 chr2 120313876 120313876 G A exonic Capn3 nonsynonymous SNV NM_001109761:c.G808A:p.V270I exonic Capn3 nonsynonymous SNV uc008lwa.2:c.G868A:p.V290I exonic ENSMUSG00000079110 nonsynonymous SNV ENSMUST00000028748:c.G808A:p.V270I 2qE5 NA NA chr2 120313876 TCAxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 77 2 0 36.243236 0.46875 0.02 -0.289308 17 15 467 387 60 60 0 0 GG 9.926421 33 0 929 0 KEEP + Capn3 YES MNNG_3 chr2 120599105 120599105 G A intronic Ttbk2 NA NA intronic Ttbk2 NA NA intronic ENSMUSG00000090100 NA NA 2qE5 NA NA chr2 120599105 AGAxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05402 0.054137 0.997832 30 0 0 10.298739 0.5 0.02 -0.07015 4 4 114 108 60 60 0 0 GG 4.803873 16 0 443 0 KEEP - Ttbk2 YES MNNG_3 chr2 121255201 121255201 G A exonic Pdia3 nonsynonymous SNV NM_007952:c.G484A:p.D162N exonic Pdia3 nonsynonymous SNV uc008lzb.1:c.G484A:p.D162N exonic ENSMUSG00000027248 nonsynonymous SNV ENSMUST00000028683:c.G484A:p.D162N 2qE5 NA NA chr2 121255201 AGGxATT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 123 0 0 33.068616 0.333333 0.02 -0.368296 28 14 788 380 60 60 0 0 GG 17.145957 57 0 1612 0 KEEP + Pdia3 YES MNNG_3 chr2 121265436 121265436 G A intronic Ell3 NA NA intronic Ell3 NA NA intronic "ENSMUSG00000027246,ENSMUSG00000046110" NA NA 2qE5 NA NA chr2 121265436 AGGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 187 0 0 87.465836 0.478873 0.02 0.965989 37 34 1046 926 60 60 0 0 GG 27.072603 90 0 2555 0 KEEP - Ell3 YES MNNG_3 chr2 121332294 121332294 G A UTR5 Mfap1a NA NA UTR5 Mfap1a NA NA UTR5 ENSMUSG00000068479 NA NA 2qE5 "Score=0.977255;Name=No.75329,chr2:121285712" NA chr2 121332294 GCGxGGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 71 7 2 22.006289 0.391304 0.02 -0.219213 14 9 392 244 60 60 0 0 GG 10.527159 35 0 966 0 KEEP - Mfap1a YES MNNG_3 chr2 125389759 125389759 G A exonic Cep152 synonymous SNV NM_001081091:c.C4588T:p.L1530L exonic "AK028650,Cep152" synonymous SNV uc008mct.1:c.C352T:p.L118L exonic ENSMUSG00000068394 synonymous SNV ENSMUST00000089776:c.C4588T:p.L1530L 2qF1 NA NA chr2 125389759 GCAxCGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 98 0 0 54.740393 0.5 0.02 -0.385783 22 22 617 575 60 60 0 0 GG 14.738738 49 0 1372 0 KEEP - Cep152 YES MNNG_3 chr2 126568365 126568365 G A exonic Usp8 nonsynonymous SNV NM_001252580:c.G1757A:p.R586K exonic Usp8 nonsynonymous SNV uc008mec.1:c.G1154A:p.R385K exonic ENSMUSG00000027363 nonsynonymous SNV ENSMUST00000028841:c.G1724A:p.R575K 2qF1 NA NA chr2 126568365 AGAxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 81 0 0 36.469866 0.384615 0.02 -0.350704 24 15 657 406 60 60 0 0 GG 8.565028 33 1 913 12 KEEP + Usp8 YES MNNG_3 chr2 126887547 126887547 G A exonic Ap4e1 nonsynonymous SNV NM_175550:c.G2632A:p.E878K exonic Ap4e1 nonsynonymous SNV uc008men.1:c.G2632A:p.E878K exonic ENSMUSG00000001998 nonsynonymous SNV ENSMUST00000002063:c.G2632A:p.E878K 2qF1 NA NA chr2 126887547 ATGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 201 0 0 59.769811 0.396825 0.02 1.046524 38 25 1044 662 60 60 0 0 GG 30.679693 102 0 2888 0 KEEP + Ap4e1 YES MNNG_3 chr2 127081930 127081930 G A intronic Tmem127 NA NA intronic Tmem127 NA NA intronic ENSMUSG00000034850 NA NA 2qF1 NA NA chr2 127081930 AAGxGAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 94 0 0 52.201753 0.512821 0.02 -0.341958 19 20 521 544 60 60 0 0 GG 11.126309 37 0 1014 0 KEEP + Tmem127 YES MNNG_3 chr2 127189424 127189424 G A exonic Adra2b nonsynonymous SNV NM_009633:c.G124A:p.V42M exonic Adra2b nonsynonymous SNV uc008mfi.1:c.G124A:p.V42M exonic ENSMUSG00000058620 nonsynonymous SNV ENSMUST00000071902:c.G124A:p.V42M 2qF1 NA NA chr2 127189424 GCTxTGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 161 0 0 86.376221 0.506667 0.02 0.834511 37 38 1025 909 60 60 0 0 GG 21.015604 70 0 1878 0 KEEP + Adra2b YES MNNG_3 chr2 127653044 127653044 G A exonic Bub1 stopgain SNV NM_001113179:c.C415T:p.Q139X exonic Bub1 stopgain SNV uc008mgd.2:c.C415T:p.Q139X exonic ENSMUSG00000027379 stopgain SNV ENSMUST00000028858:c.C415T:p.Q139X 2qF1 NA NA chr2 127653044 ATTxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865686 0.865745 0.999931 70 0 0 40.481382 0.461538 0.02 -0.341849 21 18 589 436 60 60 0 0 GG 7.520625 25 0 716 0 KEEP - Bub1 YES MNNG_3 chr2 128668350 128668350 G A exonic Tmem87b nonsynonymous SNV NM_028248:c.G1294A:p.V432I exonic Tmem87b nonsynonymous SNV uc008mgx.1:c.G1294A:p.V432I exonic ENSMUSG00000014353 nonsynonymous SNV ENSMUST00000110325:c.G1294A:p.V432I 2qF1 NA NA chr2 128668350 TGGxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 139 0 0 68.45513 0.529412 0.02 1.052855 24 27 662 709 60 60 0 0 GG 18.647013 62 0 1702 0 KEEP + Tmem87b YES MNNG_3 chr2 128864533 128864533 G A intergenic "Zc3h6(dist=20234),Ttl(dist=27150)" NA NA intergenic "Zc3h6(dist=20234),Ttl(dist=27150)" NA NA exonic ENSMUSG00000079051 nonsynonymous SNV ENSMUST00000145798:c.C1208T:p.A403V 2qF1 NA NA chr2 128864533 AAAxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 91 0 0 27.070931 0.307692 0.02 -0.341966 27 12 751 318 60 60 0 0 GG 12.934265 43 0 1208 0 KEEP NA Zc3h6 YES MNNG_3 chr2 130060548 130060548 G A exonic Tmc2 nonsynonymous SNV NM_138655:c.G1057A:p.G353R exonic Tmc2 nonsynonymous SNV uc008mik.1:c.G1057A:p.G353R exonic ENSMUSG00000060332 nonsynonymous SNV ENSMUST00000166774:c.G1057A:p.G353R 2qF1 NA NA chr2 130060548 GAGxGGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 64 2 0 20.069912 0.4 0.02 -0.175383 12 8 339 221 60 60 0 0 GG 9.625325 32 0 893 0 KEEP + Tmc2 YES MNNG_3 chr2 130107273 130107273 C A exonic Idh3b nonsynonymous SNV NM_130884:c.G532T:p.A178S exonic Idh3b nonsynonymous SNV uc008min.2:c.G532T:p.A178S exonic ENSMUSG00000027406 nonsynonymous SNV ENSMUST00000028892:c.G532T:p.A178S 2qF1 NA NA chr2 130107273 TGGxGCT C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 311 0 0 142.384541 0.459016 0.02 2.410915 66 56 1659 1522 60 60 0 0 CC 45.66933 152 0 3877 0 KEEP - Idh3b NO MNNG_3 chr2 130107428 130107428 G A exonic Idh3b synonymous SNV NM_130884:c.C474T:p.D158D exonic Idh3b synonymous SNV uc008min.2:c.C474T:p.D158D exonic ENSMUSG00000027406 synonymous SNV ENSMUST00000028892:c.C474T:p.D158D 2qF1 NA NA chr2 130107428 CAGxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 290 0 0 117.409331 0.457944 0.02 2.256599 58 49 1601 1261 60 60 0 0 GG 43.845866 146 0 3957 0 KEEP - Idh3b YES MNNG_3 chr2 130232600 130232600 G A exonic Tmem239 stopgain SNV NM_025753:c.G141A:p.W47X exonic 4933425O20Rik stopgain SNV uc008mit.1:c.G141A:p.W47X exonic ENSMUSG00000049692 stopgain SNV ENSMUST00000055421:c.G141A:p.W47X 2qF1 NA NA chr2 130232600 GTGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 78 0 0 47.242075 0.527778 0.02 -0.333145 17 19 462 490 60 60 0 0 GG 10.226249 34 0 939 0 KEEP + Tmem239 YES MNNG_3 chr2 130402484 130402484 G A exonic Oxt nonsynonymous SNV NM_011025:c.G278A:p.G93E exonic Oxt nonsynonymous SNV uc008mjg.1:c.G278A:p.G93E exonic ENSMUSG00000027301 nonsynonymous SNV ENSMUST00000028764:c.G278A:p.G93E 2qF1 NA NA chr2 130402484 GCGxGAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582905 0.58293 0.999957 54 0 0 21.309964 0.346154 0.02 -0.227981 17 9 472 243 60 60 0 0 GG 7.820112 26 0 719 0 KEEP + Oxt YES MNNG_3 chr2 130490242 130490242 G A exonic Ddrgk1 synonymous SNV NM_029832:c.C60T:p.F20F exonic Ddrgk1 synonymous SNV uc008mjs.1:c.C60T:p.F20F exonic ENSMUSG00000068290 synonymous SNV ENSMUST00000089559:c.C60T:p.F20F 2qF1 NA NA chr2 130490242 CAGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 85 0 0 38.82092 0.5 0.02 -0.263058 15 15 419 407 60 60 0 0 GG 12.92473 43 0 1193 0 KEEP - Ddrgk1 YES MNNG_3 chr2 131020474 131020474 C T exonic Cdc25b nonsynonymous SNV NM_001111075:c.C1379T:p.S460L exonic Cdc25b nonsynonymous SNV uc008mkz.2:c.C1379T:p.S460L exonic ENSMUSG00000027330 nonsynonymous SNV ENSMUST00000079857:c.C1379T:p.S460L 2qF1 NA NA chr2 131020474 TCTxGTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 110 2 0 63.883762 0.510204 0.02 -0.42941 24 25 575 667 60 60 0 0 CC 13.772365 46 0 1124 0 KEEP + Cdc25b YES MNNG_3 chr2 131372227 131372227 G A exonic Adra1d synonymous SNV NM_013460:c.C1143T:p.I381I exonic Adra1d synonymous SNV uc008mlu.1:c.C1143T:p.I381I exonic ENSMUSG00000027335 synonymous SNV ENSMUST00000028810:c.C1143T:p.I381I 2qF1 NA NA chr2 131372227 GAAxATG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162446 0.162467 0.999869 38 0 0 9.123702 0.307692 0.02 -0.113991 9 4 251 107 60 60 0 1 GG 6.317032 21 0 599 0 KEEP - Adra1d YES MNNG_3 chr2 135185373 135185373 G A intronic Plcb1 NA NA intronic Plcb1 NA NA ncRNA_intronic ENSMUSG00000085631 NA NA 2qF3 NA NA chr2 135185373 AAAxATG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120425 0.120436 0.999909 43 2 0 12.592395 0.454545 0.02 -0.09646 6 5 173 135 60 60 0 0 GG 7.209261 24 0 670 0 KEEP + Plcb1 YES MNNG_3 chr2 140486977 140486977 G A exonic Flrt3 synonymous SNV NM_001172160:c.C466T:p.L156L exonic Flrt3 synonymous SNV uc012cfb.1:c.C466T:p.L156L exonic ENSMUSG00000051379 synonymous SNV ENSMUST00000056760:c.C466T:p.L156L 2qF3 NA NA chr2 140486977 GCAxATA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 75 0 0 26.9874 0.37931 0.02 -0.254303 18 11 510 301 60 60 0 0 GG 12.331028 41 0 1155 0 KEEP - Flrt3 YES MNNG_3 chr2 144307358 144307358 G A intronic Dzank1 NA NA intronic 6330439K17Rik NA NA ncRNA_intronic ENSMUSG00000083674 NA NA 2qG1 NA NA chr2 144307358 AGAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 98 2 0 52.749196 0.540541 0.02 -0.324447 17 20 484 543 60 60 0 0 GG 12.032801 40 0 1151 0 KEEP - Dzank1 YES MNNG_3 chr2 144328670 144328670 G A exonic Dzank1 nonsynonymous SNV NM_172859:c.C902T:p.A301V exonic 6330439K17Rik nonsynonymous SNV uc008mrd.1:c.C902T:p.A301V exonic ENSMUSG00000037259 nonsynonymous SNV ENSMUST00000081982:c.C902T:p.A301V 2qG1 NA NA chr2 144328670 CTGxCCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 88 0 0 49.286587 0.5 0.02 -0.368025 20 20 556 518 60 60 0 0 GG 9.016866 30 0 816 0 KEEP - Dzank1 YES MNNG_3 chr2 145745467 145745467 G A intronic Crnkl1 NA NA intronic Crnkl1 NA NA intronic ENSMUSG00000001767 NA NA 2qG1 NA NA chr2 145745467 CTGxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 181 0 0 86.300005 0.52381 0.02 1.142822 30 33 828 895 60 60 0 0 GG 25.565918 85 0 2354 0 KEEP - Crnkl1 YES MNNG_3 chr2 150409750 150409750 G A exonic Apmap nonsynonymous SNV NM_027977:c.C1213T:p.P405S exonic 2310001A20Rik nonsynonymous SNV uc008mud.1:c.C1213T:p.P405S exonic ENSMUSG00000033096 nonsynonymous SNV ENSMUST00000046399:c.C1213T:p.P405S 2qG3 NA NA chr2 150409750 AGGxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 47 0 0 17.62181 0.5 0.02 -0.12275 7 7 197 185 60 60 0 1 GG 8.423154 28 0 800 0 KEEP - Apmap YES MNNG_3 chr2 151532661 151532661 G A exonic Tmem74b nonsynonymous SNV NM_001160363:c.G571A:p.G191R exonic 5430405G05Rik nonsynonymous SNV uc008nei.2:c.G571A:p.G191R exonic ENSMUSG00000044364 nonsynonymous SNV ENSMUST00000060196:c.G571A:p.G191R 2qG3 NA NA chr2 151532661 AGGxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 76 0 0 33.721126 0.358974 0.02 -0.341978 25 14 694 381 60 60 0 0 GG 9.60977 32 0 876 0 KEEP + Tmem74b YES MNNG_3 chr2 151755138 151755138 G A exonic Angpt4 nonsynonymous SNV NM_009641:c.G637A:p.A213T exonic Angpt4 nonsynonymous SNV uc008neq.1:c.G637A:p.A213T exonic ENSMUSG00000027460 nonsynonymous SNV ENSMUST00000028955:c.G637A:p.A213T 2qG3 NA NA chr2 151755138 CAGxCAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.48826 0.490544 0.995343 43 1 0 21.506223 0.391304 0.02 -0.201673 14 9 391 239 60 60 0 0 GG 4.211167 14 0 392 0 KEEP + Angpt4 YES MNNG_3 chr2 152137233 152137233 G A exonic Tbc1d20 nonsynonymous SNV NM_024196:c.G946A:p.A316T exonic Tbc1d20 nonsynonymous SNV uc008nfb.1:c.G946A:p.A316T exonic ENSMUSG00000027465 nonsynonymous SNV ENSMUST00000028963:c.G946A:p.A316T 2qG3 NA NA chr2 152137233 GAGxCTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.888853 0.888875 0.999974 89 0 0 46.1647 0.463415 0.02 -0.359423 22 19 594 494 60 60 0 0 GG 11.427514 38 0 1034 0 KEEP + Tbc1d20 YES MNNG_3 chr2 152142647 152142647 G A exonic Rbck1 nonsynonymous SNV NM_001083921:c.C1450T:p.P484S exonic Rbck1 nonsynonymous SNV uc008nfd.1:c.C1450T:p.P484S exonic ENSMUSG00000027466 nonsynonymous SNV ENSMUST00000109847:c.C1450T:p.P484S 2qG3 NA NA chr2 152142647 CTGxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16171 0.162467 0.995343 30 0 0 12.423206 0.384615 0.02 -0.114 8 5 227 138 60 60 0 0 GG 4.210526 14 0 384 0 KEEP - Rbck1 YES MNNG_3 chr2 152200003 152200003 G A exonic Nrsn2 synonymous SNV NM_001009948:c.C15T:p.R5R exonic Nrsn2 synonymous SNV uc008nfh.1:c.C15T:p.R5R exonic ENSMUSG00000059361 synonymous SNV ENSMUST00000079278:c.C15T:p.R5R 2qG3 NA NA chr2 152200003 GGGxCGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 237 0 0 94.628801 0.481481 0.02 0.789899 42 39 1152 1004 60 60 0 0 GG 34.865313 116 0 3147 0 KEEP - Nrsn2 YES MNNG_3 chr2 153085412 153085412 G A exonic Pofut1 nonsynonymous SNV NM_080463:c.G634A:p.E212K exonic Pofut1 nonsynonymous SNV uc008nhn.1:c.G349A:p.E117K exonic ENSMUSG00000046020 nonsynonymous SNV ENSMUST00000123487:c.G349A:p.E117K 2qH1 NA NA chr2 153085412 AGGxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 133 4 0 86.169421 0.568966 0.02 1.08042 25 33 711 877 60 60 0 0 GG 16.68888 59 1 1642 9 KEEP + Pofut1 YES MNNG_3 chr2 153142783 153142783 G A exonic Kif3b nonsynonymous SNV NM_008444:c.G767A:p.G256E exonic Kif3b nonsynonymous SNV uc008nhp.2:c.G767A:p.G256E exonic ENSMUSG00000027475 nonsynonymous SNV ENSMUST00000028977:c.G767A:p.G256E 2qH1 NA NA chr2 153142783 CTGxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999998 77 0 0 28.837816 0.352941 0.02 -0.298133 22 12 613 327 60 60 0 0 GG 10.226898 34 0 960 0 KEEP + Kif3b YES MNNG_3 chr2 160605959 160605959 G A exonic Zhx3 nonsynonymous SNV NM_177263:c.C2023T:p.P675S exonic Zhx3 nonsynonymous SNV uc008nre.1:c.C2023T:p.P675S exonic ENSMUSG00000035877 nonsynonymous SNV ENSMUST00000103111:c.C2023T:p.P675S 2qH2 NA NA chr2 160605959 TAGxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 161 4 0 68.505592 0.414286 0.02 1.072785 41 29 1106 753 60 60 0 0 GG 22.152083 74 0 1977 0 KEEP - Zhx3 YES MNNG_3 chr2 163201866 163201866 G A exonic Jph2 stopgain SNV NM_021566:c.C625T:p.R209X exonic Jph2 stopgain SNV uc008nsp.1:c.C625T:p.R209X exonic ENSMUSG00000017817 stopgain SNV ENSMUST00000017961:c.C625T:p.R209X 2qH3 NA NA chr2 163201866 GTCxCGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 55 0 0 38.958966 0.625 0.02 -0.210312 9 15 214 387 60 60 0 0 GG 8.710712 29 0 705 0 KEEP - Jph2 YES MNNG_3 chr2 164822979 164822979 G A UTR3 Slc12a5 NA NA UTR3 Slc12a5 NA NA UTR3 ENSMUSG00000017740 NA NA 2qH3 NA NA chr2 164822979 CAGxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 1 67 0 0 26.064801 0.588235 0.02 -0.157802 7 10 185 263 60 60 0 0 GG 10.065851 34 0 735 0 KEEP + Slc12a5 YES MNNG_3 chr2 165658790 165658790 G A intronic Zmynd8 NA NA intronic Zmynd8 NA NA intronic ENSMUSG00000039671 NA NA 2qH3 NA NA chr2 165658790 ACAxCCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999999 74 1 0 28.532574 0.52381 0.02 -0.192906 10 11 284 296 60 60 0 0 GG 10.517127 35 0 990 0 KEEP - Zmynd8 YES MNNG_3 chr2 166691229 166691229 G A exonic Arfgef2 nonsynonymous SNV NM_001085495:c.G3044A:p.G1015E exonic Arfgef2 nonsynonymous SNV uc008nyr.2:c.G3044A:p.G1015E exonic ENSMUSG00000074582 nonsynonymous SNV ENSMUST00000099078:c.G3044A:p.G1015E 2qH3 NA NA chr2 166691229 CTGxGGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.99986 48 0 0 33.571256 0.5 0.02 -0.227984 13 13 364 352 60 60 0 0 GG 5.715275 19 0 534 0 KEEP + Arfgef2 YES MNNG_3 chr2 172205817 172205817 G A intronic Cstf1 NA NA intronic Cstf1 NA NA intronic ENSMUSG00000027498 NA NA 2qH3 NA NA chr2 172205817 GAGxCGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 68 0 0 42.602066 0.615385 0.02 -0.227968 10 16 279 425 60 60 0 0 GG 9.323318 31 0 852 0 KEEP + Cstf1 YES MNNG_3 chr2 172382553 172382553 G A intronic Tfap2c NA NA intronic Tcfap2c NA NA intronic ENSMUSG00000028640 NA NA 2qH3 NA NA chr2 172382553 TCGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076843 0.077336 0.993634 21 0 0 8.089633 0.444444 0.02 -0.078495 5 4 138 89 60 60 0 0 GG 3.607289 12 0 323 0 KEEP + Tfap2c YES MNNG_3 chr2 172382753 172382753 C T exonic Tfap2c synonymous SNV NM_001159696:c.C1344T:p.S448S exonic Tcfap2c synonymous SNV uc008ocz.2:c.C1227T:p.S409S exonic ENSMUSG00000028640 synonymous SNV ENSMUST00000030391:c.C1227T:p.S409S 2qH3 NA NA chr2 172382753 CTCxGCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38739 0.387407 0.999957 50 0 0 35.678882 0.65 0.02 -0.175296 7 13 165 351 60 60 0 0 CC 7.749071 26 0 618 0 KEEP + Tfap2c YES MNNG_3 chr2 17291316 17291316 G A intronic Nebl NA NA intronic Nebl NA NA intronic ENSMUSG00000053702 NA NA 2qA3 NA NA chr2 17291316 AGAxGGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 110 2 0 39.079053 0.454545 0.02 -0.289383 18 15 506 418 60 60 0 0 GG 15.642601 52 0 1479 0 KEEP - Nebl YES MNNG_3 chr2 17918179 17918179 G A exonic H2afb1 nonsynonymous SNV NM_026627:c.C322T:p.P108S exonic H2afb1 nonsynonymous SNV uc008ili.1:c.C322T:p.P108S exonic ENSMUSG00000062651 nonsynonymous SNV ENSMUST00000105001:c.C322T:p.P108S 2qA3 "Score=0.924407;Name=No.80486,chrX:13788013" NA chr2 17918179 CAGxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 238 2 0 84.589017 0.426829 0.02 0.781103 47 35 1276 922 60 60 0 0 GG 38.761101 129 0 3541 0 KEEP - H2afb1 YES MNNG_3 chr2 179923322 179923322 G A exonic Lama5 stopgain SNV NM_001081171:c.C5596T:p.Q1866X exonic Lama5 stopgain SNV uc008oip.1:c.C5596T:p.Q1866X exonic ENSMUSG00000015647 stopgain SNV ENSMUST00000015791:c.C5596T:p.Q1866X 2qH4 NA NA chr2 179923322 ACTxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 128 2 0 81.036933 0.596154 0.02 1.141422 21 31 604 815 60 60 0 0 GG 16.544477 55 0 1567 0 KEEP - Lama5 YES MNNG_3 chr2 181090663 181090663 G A exonic Rtel1 synonymous SNV NM_001166666:c.G3381A:p.Q1127Q exonic Rtel1 synonymous SNV uc012cmn.1:c.G2784A:p.Q928Q exonic ENSMUSG00000038685 synonymous SNV ENSMUST00000148252:c.G2847A:p.Q949Q 2qH4 NA NA chr2 181090663 CCAxAGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 298 0 0 121.380079 0.466019 0.02 2.291586 55 48 1554 1294 60 60 0 0 GG 45.726991 152 0 4374 0 KEEP + Rtel1 YES MNNG_3 chr2 181281104 181281104 G A exonic Dnajc5 synonymous SNV NM_016775:c.G18A:p.Q6Q exonic Dnajc5 synonymous SNV uc008omp.1:c.G18A:p.Q6Q exonic ENSMUSG00000000826 synonymous SNV ENSMUST00000072334:c.G18A:p.Q6Q 2qH4 NA NA chr2 181281104 GCAxCGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 106 0 0 34.607087 0.424242 0.02 -0.289371 19 14 539 377 60 60 0 0 GG 18.34731 61 0 1708 0 KEEP + Dnajc5 YES MNNG_3 chr2 19166349 19166349 A T intronic Armc3 NA NA intronic Armc3 NA NA intronic ENSMUSG00000037683 NA NA 2qA3 NA NA chr2 19166349 GTAxGGC A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120013 0.120436 0.99649 31 0 0 15.568623 0.545455 0.02 -0.096448 5 6 138 160 60 60 0 0 AA 4.512181 15 0 424 0 KEEP + Armc3 NO MNNG_3 chr2 21748901 21748901 A G exonic Gpr158 nonsynonymous SNV NM_001004761:c.A3184G:p.K1062E exonic Gpr158 nonsynonymous SNV uc008inf.1:c.A3184G:p.K1062E exonic ENSMUSG00000045967 nonsynonymous SNV ENSMUST00000055946:c.A3184G:p.K1062E 2qA3 NA NA chr2 21748901 GACxAGA A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 80 0 0 107.279885 1 0.02 -0.298025 0 34 0 911 0 60 0 0 AA 12.031041 40 0 1104 0 KEEP + Gpr158 NO MNNG_3 chr2 22809114 22809114 G A exonic Abi1 nonsynonymous SNV NM_001077192:c.C820T:p.P274S exonic Abi1 nonsynonymous SNV uc008inr.1:c.C451T:p.P151S exonic ENSMUSG00000058835 nonsynonymous SNV ENSMUST00000126112:c.C823T:p.P275S 2qA3 NA NA chr2 22809114 CAGxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 38 0 0 30.550023 0.647059 0.02 -0.14907 6 11 170 301 60 60 0 0 GG 5.114005 17 0 485 0 KEEP - Abi1 YES MNNG_3 chr2 22949923 22949923 G A exonic Acbd5 nonsynonymous SNV NM_001102436:c.G940A:p.G314R exonic Acbd5 nonsynonymous SNV uc008inx.1:c.G940A:p.G314R exonic ENSMUSG00000026781 nonsynonymous SNV ENSMUST00000028121:c.G940A:p.G314R 2qA3 NA NA chr2 22949923 AAAxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.608972 0.612407 0.994391 44 0 0 30.667385 0.444444 0.02 -0.236763 15 12 422 330 60 60 0 0 GG 3.91064 13 0 369 0 KEEP + Acbd5 YES MNNG_3 chr2 25091458 25091458 A T exonic Gm757 synonymous SNV NM_001033410:c.T402A:p.P134P exonic Gm757 synonymous SNV uc008iqu.1:c.T402A:p.P134P exonic ENSMUSG00000089953 synonymous SNV ENSMUST00000091318:c.T402A:p.P134P 2qA3 NA NA chr2 25091458 CTGxGGG A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 37 0 0 13.776337 0.4 0.02 -0.13151 9 6 247 153 60 60 0 1 AA 5.414427 18 0 505 0 KEEP - Gm757 NO MNNG_3 chr2 25128474 25128474 G A exonic Anapc2 nonsynonymous SNV NM_175300:c.G202A:p.E68K exonic Anapc2 nonsynonymous SNV uc008ird.2:c.G202A:p.E68K exonic ENSMUSG00000026965 nonsynonymous SNV ENSMUST00000028341:c.G202A:p.E68K 2qA3 NA NA chr2 25128474 GAGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 149 0 0 54.511098 0.338028 0.02 1.072909 47 24 1320 628 60 60 0 0 GG 18.941484 63 0 1749 0 KEEP + Anapc2 YES MNNG_3 chr2 26279375 26279375 G A intronic Sec16a NA NA intronic Sec16a NA NA intronic ENSMUSG00000026924 NA NA 2qA3 NA NA chr2 26279375 TAGxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162445 0.162467 0.999863 37 0 0 12.123024 0.384615 0.02 -0.113994 8 5 225 135 60 60 0 0 GG 6.016229 20 0 565 0 KEEP - Sec16a YES MNNG_3 chr2 26315573 26315573 G A exonic Notch1 synonymous SNV NM_008714:c.C7074T:p.P2358P exonic Notch1 synonymous SNV uc008ivl.2:c.C7074T:p.P2358P exonic ENSMUSG00000026923 synonymous SNV ENSMUST00000102908:c.C6168T:p.P2056P 2qA3 NA NA chr2 26315573 GTTxGGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 129 0 0 67.713228 0.55102 0.02 -0.429497 22 27 626 695 60 60 0 0 GG 19.251991 64 0 1823 0 KEEP - Notch1 YES MNNG_3 chr2 26324052 26324052 T C exonic Notch1 nonsynonymous SNV NM_008714:c.A4286G:p.D1429G exonic Notch1 nonsynonymous SNV uc008ivl.2:c.A4286G:p.D1429G exonic ENSMUSG00000026923 nonsynonymous SNV ENSMUST00000102908:c.A4037G:p.D1346G 2qA3 NA NA chr2 26324052 TAGxCCA T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 150 4 0 77.646605 0.441176 0.02 1.099022 38 30 996 836 60 60 0 0 TT 17.444358 58 0 1593 0 KEEP - Notch1 NO MNNG_3 chr2 26767011 26767011 G A exonic Rpl7a nonsynonymous SNV NM_013721:c.G194A:p.R65Q exonic Rpl7a nonsynonymous SNV uc008iwf.1:c.G194A:p.R65Q exonic ENSMUSG00000062647 nonsynonymous SNV ENSMUST00000102898:c.G194A:p.R65Q 2qA3 NA NA chr2 26767011 AGCxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 163 2 0 28.918632 0.461538 0.02 -0.227753 14 12 358 310 60 60 0 0 GG 31.250947 104 0 2665 0 KEEP + Rpl7a YES MNNG_3 chr2 28668548 28668548 G A exonic Ak8 nonsynonymous SNV NM_001033874:c.G1403A:p.S468N exonic Ak8 nonsynonymous SNV uc008izd.1:c.G1403A:p.S468N exonic ENSMUSG00000026807 nonsynonymous SNV ENSMUST00000074156:c.G1403A:p.S468N 2qA3 NA NA chr2 28668548 AGAxCGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.999859 49 0 0 23.245371 0.384615 0.02 -0.227942 16 10 443 260 60 60 0 0 GG 5.414382 18 0 506 0 KEEP + Ak8 YES MNNG_3 chr2 29645524 29645524 G A intronic Coq4 NA NA intronic Coq4 NA NA intronic ENSMUSG00000026798 NA NA 2qB NA NA chr2 29645524 TAGxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 41 0 0 32.229116 0.619048 0.02 -0.184068 8 13 219 321 60 60 0 0 GG 5.097012 17 0 442 0 KEEP + Coq4 YES MNNG_3 chr2 29885224 29885224 G A intronic Sptan1 NA NA intronic Spna2 NA NA intronic ENSMUSG00000057738 NA NA 2qB NA NA chr2 29885224 GAGxCCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 84 2 0 43.535121 0.44186 0.02 -0.376951 24 19 663 473 60 60 0 0 GG 10.223628 34 0 919 0 KEEP + Sptan1 YES MNNG_3 chr2 30186444 30186444 G A exonic Nup188 stopgain SNV NM_198304:c.G2925A:p.W975X exonic Nup188 stopgain SNV uc008jcb.1:c.G2925A:p.W975X exonic ENSMUSG00000052533 stopgain SNV ENSMUST00000064447:c.G2925A:p.W975X 2qB NA NA chr2 30186444 CTGxTGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 97 0 0 57.321291 0.511111 0.02 -0.394529 22 23 600 599 60 60 0 0 GG 13.534534 45 0 1239 0 KEEP + Nup188 YES MNNG_3 chr2 30259049 30259049 G A exonic Crat nonsynonymous SNV NM_007760:c.C1625T:p.S542F exonic Crat nonsynonymous SNV uc008jck.1:c.C611T:p.S204F exonic ENSMUSG00000026853 nonsynonymous SNV ENSMUST00000154595:c.C200T:p.S67F 2qB NA NA chr2 30259049 TAAxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 127 0 0 62.761713 0.454545 0.02 1.20418 30 25 850 673 60 60 0 0 GG 15.94301 53 0 1508 0 KEEP - Crat YES MNNG_3 chr2 30260114 30260114 G A intronic Crat NA NA intronic Crat NA NA intronic ENSMUSG00000026853 NA NA 2qB NA NA chr2 30260114 CTGxGGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 116 0 0 49.386446 0.377358 0.02 1.106334 33 20 902 551 60 60 0 0 GG 15.336278 51 0 1403 0 KEEP - Crat YES MNNG_3 chr2 30908579 30908579 G A exonic Fnbp1 nonsynonymous SNV NM_001177650:c.C826T:p.P276S exonic Fnbp1 nonsynonymous SNV uc008jdh.1:c.C826T:p.P276S exonic ENSMUSG00000075415 nonsynonymous SNV ENSMUST00000075326:c.C1006T:p.P336S 2qB NA NA chr2 30908579 GGGxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.489481 0.490544 0.997832 47 0 0 23.437309 0.434783 0.02 -0.201382 13 10 335 255 60 60 0 0 GG 4.811484 16 0 428 0 KEEP - Fnbp1 YES MNNG_3 chr2 31300906 31300906 G A intergenic "Ncs1(dist=149915),Ass1(dist=24884)" NA NA intronic Hmcn2 NA NA intronic ENSMUSG00000055632 NA NA 2qB NA NA chr2 31300906 GTGxATG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229145 0.229173 0.999879 40 0 0 28.220799 0.666667 0.02 -0.131532 5 10 139 276 60 60 0 0 GG 6.61835 22 0 632 0 KEEP NA Ncs1 YES MNNG_3 chr2 31656032 31656032 G A exonic Abl1 nonsynonymous SNV NM_001112703:c.G2042A:p.S681N exonic Abl1 nonsynonymous SNV uc008jeb.2:c.G2042A:p.S681N exonic ENSMUSG00000026842 nonsynonymous SNV ENSMUST00000028190:c.G1985A:p.S662N 2qB NA NA chr2 31656032 CCAxCAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.385603 0.387407 0.995343 34 0 0 25.357707 0.526316 0.02 -0.175364 9 10 257 263 60 60 0 0 GG 4.210605 14 0 385 0 KEEP + Abl1 YES MNNG_3 chr2 32108546 32108546 G A intronic Pomt1 NA NA intronic Pomt1 NA NA intronic ENSMUSG00000039254 NA NA 2qB NA NA chr2 32108546 TAGxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 157 0 0 81.255374 0.423077 0.02 0.904807 45 33 1255 886 60 60 0 0 GG 18.34811 61 0 1729 0 KEEP + Pomt1 YES MNNG_3 chr2 32241044 32241044 C A intronic Lcn2 NA NA intronic Lcn2 NA NA intronic ENSMUSG00000026822 NA NA 2qB NA NA chr2 32241044 CTGxAAC C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 97 0 0 55.89387 0.525 0.02 -0.350753 19 21 530 579 60 60 0 0 CC 13.536438 45 0 1274 0 KEEP - Lcn2 NO MNNG_3 chr2 32310598 32310598 G A exonic Naif1 nonsynonymous SNV NM_194335:c.G793A:p.A265T exonic Naif1 nonsynonymous SNV uc008jfr.1:c.G793A:p.A265T exonic ENSMUSG00000039164 nonsynonymous SNV ENSMUST00000048431:c.G793A:p.A265T 2qB NA NA chr2 32310598 CAGxCCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.2608 0.260965 0.999366 39 0 0 20.39727 0.5 0.02 -0.140296 8 8 226 214 60 60 0 0 GG 5.113448 17 0 474 0 KEEP + Naif1 YES MNNG_3 chr2 32601444 32601444 G A exonic Sh2d3c stopgain SNV NM_001252547:c.G303A:p.W101X exonic Sh2d3c stopgain SNV uc008jgr.1:c.G303A:p.W101X exonic ENSMUSG00000059013 stopgain SNV ENSMUST00000131101:c.G300A:p.W100X 2qB NA NA chr2 32601444 CTGxCAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888874 0.888875 0.999999 88 0 0 43.872752 0.439024 0.02 -0.359484 23 18 637 475 60 60 0 0 GG 10.525574 35 0 958 0 KEEP + Sh2d3c YES MNNG_3 chr2 34421258 34421258 G A intronic Mapkap1 NA NA intronic Mapkap1 NA NA ncRNA_exonic ENSMUSG00000081992 NA NA 2qB NA NA chr2 34421258 CGAxACG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 136 0 0 83.954684 0.62 0.02 -0.438428 19 31 546 836 60 60 0 0 GG 20.714362 69 0 1895 0 KEEP + Mapkap1 YES MNNG_3 chr2 34629701 34629701 G A exonic Hspa5 synonymous SNV NM_022310:c.G762A:p.L254L exonic Hspa5 synonymous SNV uc008jit.2:c.G762A:p.L254L exonic ENSMUSG00000026864 synonymous SNV ENSMUST00000100171:c.G762A:p.L254L 2qB NA NA chr2 34629701 CCTxGGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 95 0 0 49.595623 0.487805 0.02 -0.359484 21 20 593 524 60 60 0 0 GG 12.03272 40 0 1136 0 KEEP + Hspa5 YES MNNG_3 chr2 34882019 34882019 G A intronic Hc NA NA intronic Hc NA NA intronic ENSMUSG00000026874 NA NA 2qB NA NA chr2 34882019 CAGxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 200 3 0 87.65682 0.492958 0.02 0.975519 36 35 1005 924 60 60 0 0 GG 29.17755 97 0 2742 0 KEEP - Hc YES MNNG_3 chr2 38815474 38815474 G A exonic Olfml2a nonsynonymous SNV NM_172854:c.G1681A:p.V561I exonic Olfml2a nonsynonymous SNV uc008jnv.1:c.G1681A:p.V561I exonic ENSMUSG00000046618 nonsynonymous SNV ENSMUST00000057279:c.G1681A:p.V561I 2qB NA NA chr2 38815474 TGGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 70 0 0 45.261057 0.463415 0.02 -0.359456 22 19 608 485 60 60 0 0 GG 8.421283 28 0 767 0 KEEP + Olfml2a YES MNNG_3 chr2 38815872 38815872 G A UTR3 Olfml2a NA NA UTR3 Olfml2a NA NA UTR3 ENSMUSG00000046618 NA NA 2qB NA NA chr2 38815872 GCAxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.194952 0.196312 0.993072 26 0 0 15.209352 0.428571 0.02 -0.122766 8 6 225 165 60 60 0 0 GG 3.308908 11 0 311 0 KEEP + Olfml2a YES MNNG_3 chr2 41353625 41353625 G A intronic Lrp1b NA NA UTR3 Lrp1b NA NA intronic ENSMUSG00000049252 NA NA 2qB NA NA chr2 41353625 ATAxCCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.385603 0.387407 0.995343 37 0 0 24.435729 0.5 0.02 -0.175258 10 10 284 257 60 60 0 0 GG 4.211642 14 0 402 0 KEEP - Lrp1b YES MNNG_3 chr2 51787927 51787927 G A UTR5 Rbm43 NA NA UTR5 Rbm43 NA NA UTR5 ENSMUSG00000036249 NA NA 2qC1.1 NA NA chr2 51787927 GCGxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 93 1 0 39.52963 0.517241 0.02 -0.254295 14 15 391 411 60 60 0 0 GG 15.631237 52 0 1432 0 KEEP - Rbm43 YES MNNG_3 chr2 52082997 52082997 G A exonic Neb nonsynonymous SNV NM_010889:c.C12082T:p.L4028F exonic Neb nonsynonymous SNV uc008jqw.1:c.C2680T:p.L894F exonic ENSMUSG00000026950 nonsynonymous SNV ENSMUST00000069592:c.C1759T:p.L587F 2qC1.1 NA NA chr2 52082997 AAAxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 122 1 0 54.888596 0.477273 0.02 -0.385843 23 21 650 581 60 60 0 0 GG 19.852966 66 0 1865 0 KEEP - Neb YES MNNG_3 chr2 52119458 52119458 G A exonic Neb nonsynonymous SNV NM_010889:c.C7160T:p.P2387L exonic Neb nonsynonymous SNV uc008jqv.1:c.C7160T:p.P2387L exonic ENSMUSG00000026950 nonsynonymous SNV ENSMUST00000028318:c.C677T:p.P226L 2qC1.1 NA NA chr2 52119458 TCAxGTA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 209 0 0 95.330215 0.468354 0.02 0.993705 42 37 1196 1014 60 60 0 0 GG 30.380928 101 0 2869 0 KEEP - Neb YES MNNG_3 chr2 53000931 53000931 G A intronic Prpf40a NA NA intronic Prpf40a NA NA intronic ENSMUSG00000061136 NA NA 2qC1.1 NA NA chr2 53000931 CATxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 183 4 0 50.114766 0.359375 0.02 0.737615 41 23 1139 573 60 60 0 0 GG 28.263041 94 0 2618 0 KEEP - Prpf40a YES MNNG_3 chr2 60214319 60214319 G A intronic Ly75 NA NA intronic Ly75 NA NA intronic ENSMUSG00000026980 NA NA 2qC1.1 NA NA chr2 60214319 TGGxACT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 104 0 0 39.988486 0.444444 0.02 -0.315678 20 16 569 431 60 60 0 0 GG 16.522908 55 0 1510 0 KEEP - Ly75 YES MNNG_3 chr2 6329987 6329987 G A exonic Usp6nl nonsynonymous SNV NM_181399:c.G277A:p.E93K exonic Usp6nl nonsynonymous SNV uc008igl.1:c.G277A:p.E93K exonic ENSMUSG00000039046 nonsynonymous SNV ENSMUST00000042503:c.G277A:p.E93K 2qA1 NA NA chr2 6329987 CTGxAAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 53 0 0 32.574545 0.6 0.02 -0.175378 8 12 228 327 60 60 0 0 GG 6.918782 23 0 653 0 KEEP + Usp6nl YES MNNG_3 chr2 6855535 6855535 G A intronic Celf2 NA NA intronic Celf2 NA NA exonic ENSMUSG00000075538 synonymous SNV ENSMUST00000100426:c.C111T:p.L37L 2qA1 NA NA chr2 6855535 AAGxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 97 0 0 61.898858 0.589744 0.02 -0.350733 16 23 445 624 60 60 0 0 GG 13.189965 44 0 1225 0 KEEP - Celf2 YES MNNG_3 chr2 70093422 70093422 G A exonic Myo3b nonsynonymous SNV NM_177376:c.G2444A:p.S815N exonic Myo3b nonsynonymous SNV uc008jzd.2:c.G2444A:p.S815N exonic ENSMUSG00000042064 nonsynonymous SNV ENSMUST00000112243:c.G2360A:p.S787N 2qC2 NA NA chr2 70093422 AAAxTCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 147 0 0 82.714549 0.559322 0.02 1.169517 26 33 709 846 60 60 0 0 GG 20.451298 68 0 1874 0 KEEP + Myo3b YES MNNG_3 chr2 72250214 72250214 G A exonic Zak nonsynonymous SNV NM_023057:c.G1150A:p.E384K exonic B230120H23Rik nonsynonymous SNV uc008kbv.2:c.G1150A:p.E384K exonic ENSMUSG00000004085 nonsynonymous SNV ENSMUST00000090824:c.G1150A:p.E384K 2qC3 NA NA chr2 72250214 GAGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 51 0 0 34.478442 0.565217 0.02 -0.201346 10 13 261 351 60 60 0 0 GG 6.316783 21 0 590 0 KEEP + Zak YES MNNG_3 chr2 73411360 73411360 G A exonic Chrna1 nonsynonymous SNV NM_007389:c.C301T:p.P101S exonic Chrna1 nonsynonymous SNV uc008kcy.1:c.C301T:p.P101S exonic ENSMUSG00000027107 nonsynonymous SNV ENSMUST00000028515:c.C301T:p.P101S 2qC3 NA NA chr2 73411360 AGGxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 52 0 0 21.012973 0.533333 0.02 -0.131529 7 8 196 217 60 60 0 0 GG 8.421575 28 0 776 0 KEEP - Chrna1 YES MNNG_3 chr2 75500681 75500681 G A ncRNA_intronic Gm6793 NA NA intronic Hnrnpa3 NA NA intronic ENSMUSG00000059005 NA NA 2qC3 NA NA chr2 75500681 TGGxAAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 310 3 0 122.524478 0.522222 0.02 0.809614 43 47 1163 1271 60 60 0 0 GG 57.450697 191 0 5372 0 KEEP + Gm6793 YES MNNG_3 chr2 76547553 76547553 G A exonic Ttn nonsynonymous SNV NM_028004:c.C78164T:p.T26055I exonic Ttn nonsynonymous SNV uc008kfo.1:c.C78164T:p.T26055I exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.C78164T:p.T26055I 2qC3 NA NA chr2 76547553 CAGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717307 0.717315 0.999988 59 0 0 37.11884 0.5 0.02 -0.271775 15 15 408 390 60 60 0 0 GG 8.119306 27 0 732 0 KEEP - Ttn YES MNNG_3 chr2 76556910 76556910 G A intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76556910 TTGxCGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 78 0 0 24.04053 0.37037 0.02 -0.236757 17 10 477 270 60 60 0 0 GG 10.528077 35 0 983 0 KEEP - Ttn YES MNNG_3 chr2 76756651 76756651 T A intronic Ttn NA NA intronic Ttn NA NA exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000099980:c.A12110T:p.Q4037L 2qC3 NA NA chr2 76756651 TCTxGCC T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 92 0 0 43.226073 0.428571 0.02 -0.368216 24 18 644 471 60 60 0 0 TT 12.933263 43 0 1185 0 KEEP - Ttn NO MNNG_3 chr2 79738239 79738239 A C exonic Pde1a nonsynonymous SNV NM_001009978:c.T362G:p.L121R exonic Pde1a nonsynonymous SNV uc008khe.1:c.T362G:p.L121R exonic ENSMUSG00000059173 nonsynonymous SNV ENSMUST00000102651:c.T362G:p.L121R 2qC3 NA NA chr2 79738239 ATAxGAT A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999997 71 0 0 28.072938 0.40625 0.02 -0.27999 19 13 524 313 60 60 0 0 AA 9.625404 32 0 897 0 KEEP - Pde1a NO MNNG_3 chr2 84681107 84681107 G A exonic Slc43a1 stopgain SNV NM_001083809:c.G177A:p.W59X exonic Slc43a1 stopgain SNV uc008kjl.1:c.G177A:p.W59X exonic ENSMUSG00000027075 stopgain SNV ENSMUST00000111625:c.G177A:p.W59X 2qD NA NA chr2 84681107 CTGxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161897 0.162467 0.99649 31 0 0 9.123634 0.307692 0.02 -0.113993 9 4 252 107 60 60 0 0 GG 4.510942 15 0 410 0 KEEP + Slc43a1 YES MNNG_3 chr2 85327189 85327189 G A exonic 4833423E24Rik nonsynonymous SNV NM_001081664:c.C1238T:p.S413F exonic 4833423E24Rik nonsynonymous SNV uc008kkj.1:c.C1238T:p.S413F exonic ENSMUSG00000075217 nonsynonymous SNV ENSMUST00000099923:c.C1238T:p.S413F 2qD NA NA chr2 85327189 AAGxACT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 58 0 0 23.986311 0.529412 0.02 -0.149077 8 9 229 248 60 60 0 0 GG 9.02475 30 0 857 0 KEEP - 4833423E24Rik YES MNNG_3 chr2 86691355 86691355 A G exonic Olfr1095 nonsynonymous SNV NM_146730:c.T499C:p.C167R exonic Olfr1095 nonsynonymous SNV uc008kna.1:c.T499C:p.C167R exonic ENSMUSG00000075171 nonsynonymous SNV ENSMUST00000099874:c.T499C:p.C167R 2qD NA NA chr2 86691355 GACxGAA A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 101 0 0 25.634656 0.315789 0.02 -0.332915 26 12 694 302 60 60 0 0 AA 14.737684 49 0 1349 0 KEEP - Olfr1095 NO MNNG_3 chr2 87650136 87650136 G A exonic Olfr1145 nonsynonymous SNV NM_146320:c.G158A:p.R53K exonic Olfr1145 nonsynonymous SNV uc008kos.1:c.G158A:p.R53K exonic ENSMUSG00000068814 nonsynonymous SNV ENSMUST00000090707:c.G158A:p.R53K 2qD NA NA chr2 87650136 ACAxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 133 2 0 87.525061 0.532258 0.02 1.151543 29 33 829 904 60 60 0 1 GG 18.049256 60 0 1710 0 KEEP + Olfr1145 YES MNNG_3 chr2 87737027 87737027 G A exonic Olfr1153 nonsynonymous SNV NM_146640:c.G694A:p.V232I exonic Olfr1153 nonsynonymous SNV uc008kow.1:c.G694A:p.V232I exonic ENSMUSG00000048197 nonsynonymous SNV ENSMUST00000052300:c.G694A:p.V232I 2qD NA NA chr2 87737027 TCAxTTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 136 0 0 64.289588 0.555556 0.02 -0.412083 20 25 556 658 60 60 0 0 GG 20.452825 68 0 1900 0 KEEP + Olfr1153 YES MNNG_3 chr2 88114602 88114602 G A exonic Olfr1173 synonymous SNV NM_207566:c.C603T:p.S201S exonic Olfr1173 synonymous SNV uc008kpo.1:c.C603T:p.S201S exonic ENSMUSG00000075132 synonymous SNV ENSMUST00000099830:c.C603T:p.S201S 2qD "Score=0.92129;Name=No.75255,chr2:88006135" NA chr2 88114602 CATxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 136 0 0 60.507195 0.48 0.02 -0.438413 26 24 731 641 60 60 0 0 GG 18.994072 68 1 1931 13 KEEP - Olfr1173 YES MNNG_3 chr2 88327532 88327532 G A exonic Olfr1184 synonymous SNV NM_146823:c.G642A:p.G214G exonic Olfr1184 synonymous SNV uc008kpw.1:c.G642A:p.G214G exonic ENSMUSG00000051424 synonymous SNV ENSMUST00000050038:c.G642A:p.G214G 2qD NA NA chr2 88327532 CGGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 175 0 0 103.352528 0.525 0.02 0.896634 38 42 1030 1074 60 60 0 0 GG 24.642362 82 0 2235 0 KEEP + Olfr1184 YES MNNG_3 chr2 89280102 89280102 G A exonic Olfr1240 synonymous SNV NM_146808:c.C333T:p.F111F exonic Olfr1240 synonymous SNV uc008krm.2:c.C333T:p.F111F exonic ENSMUSG00000075087 synonymous SNV ENSMUST00000099779:c.C333T:p.F111F 2qE1 NA NA chr2 89280102 AAGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 117 0 0 52.337608 0.4375 0.02 -0.420624 27 21 727 566 60 60 0 0 GG 17.447341 58 0 1647 0 KEEP - Olfr1240 YES MNNG_3 chr2 90955454 90955454 G A exonic Spi1 nonsynonymous SNV NM_011355:c.G722A:p.G241D exonic Sfpi1 nonsynonymous SNV uc008kuj.1:c.G722A:p.G241D exonic ENSMUSG00000002111 nonsynonymous SNV ENSMUST00000002180:c.G722A:p.G241D 2qE1 NA NA chr2 90955454 CAGxCGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 173 0 0 85.338167 0.5 0.02 0.90381 34 34 931 896 60 60 0 0 GG 25.261799 84 0 2289 0 KEEP + Spi1 YES MNNG_3 chr2 90987047 90987047 A C exonic Madd synonymous SNV NM_001177720:c.T4257G:p.T1419T exonic "Madd,mKIAA0358" synonymous SNV uc008kum.1:c.T366G:p.T122T exonic ENSMUSG00000040687 synonymous SNV ENSMUST00000049326:c.T3981G:p.T1327T 2qE1 NA NA chr2 90987047 AAAxGTC A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 117 0 0 23.118694 0.315789 0.02 -0.332803 26 12 711 277 60 60 0 0 AA 19.538216 65 0 1785 0 KEEP - Madd NO MNNG_3 chr2 91316460 91316460 G A exonic Lrp4 stopgain SNV NM_001145857:c.G960A:p.W320X exonic Lrp4 stopgain SNV uc008kvw.2:c.G960A:p.W320X exonic ENSMUSG00000027253 stopgain SNV ENSMUST00000028689:c.G960A:p.W320X 2qE1 NA NA chr2 91316460 TTGxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 157 0 0 63.029467 0.462963 0.02 1.123863 29 25 809 673 60 60 0 0 GG 24.305667 81 0 2252 0 KEEP + Lrp4 YES MNNG_3 chr2 91468574 91468574 G A exonic F2 nonsynonymous SNV NM_010168:c.C1550T:p.P517L exonic F2 nonsynonymous SNV uc008kwg.1:c.C1550T:p.P517L exonic ENSMUSG00000027249 nonsynonymous SNV ENSMUST00000028681:c.C1550T:p.P517L 2qE1 NA NA chr2 91468574 CTGxGCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963773 0.963774 0.999999 94 0 0 46.638319 0.372549 0.02 1.150142 32 19 889 522 60 60 0 0 GG 10.828352 36 0 1001 0 KEEP - F2 YES MNNG_3 chr2 91831035 91831035 G A intronic Creb3l1 NA NA intronic Creb3l1 NA NA intronic ENSMUSG00000027230 NA NA 2qE1 NA NA chr2 91831035 CAGxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 120 0 0 87.675607 0.583333 0.02 0.974011 25 35 689 887 60 60 0 0 GG 15.037637 50 0 1365 0 KEEP - Creb3l1 YES MNNG_3 chr2 92273977 92273977 G A exonic Cry2 synonymous SNV NM_001113333:c.C204T:p.N68N exonic "Cry2,mPHLL2" synonymous SNV uc008kxy.2:c.C204T:p.N68N exonic ENSMUSG00000068742 synonymous SNV ENSMUST00000090559:c.C204T:p.N68N 2qE1 NA NA chr2 92273977 TCGxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 86 0 0 52.81838 0.538462 0.02 -0.341916 18 21 492 545 60 60 0 0 GG 9.623229 32 0 876 0 KEEP - Cry2 YES MNNG_3 chr2 92786202 92786202 G A exonic Syt13 nonsynonymous SNV NM_030725:c.G676A:p.A226T exonic Syt13 nonsynonymous SNV uc008lfn.1:c.G676A:p.A226T exonic ENSMUSG00000027220 nonsynonymous SNV ENSMUST00000028648:c.G676A:p.A226T 2qE1 NA NA chr2 92786202 CTGxCCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 74 0 0 29.895388 0.40625 0.02 -0.280103 19 13 498 331 60 60 0 0 GG 9.863649 33 0 892 0 KEEP + Syt13 YES MNNG_3 chr2 93050089 93050089 G A exonic Tspan18 synonymous SNV NM_183180:c.C477T:p.A159A exonic Tspan18 synonymous SNV uc012bzr.1:c.C477T:p.A159A exonic ENSMUSG00000027217 synonymous SNV ENSMUST00000028646:c.C477T:p.A159A 2qE1 NA NA chr2 93050089 GGAxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 113 0 0 55.477705 0.512195 0.02 -0.359499 20 21 551 578 60 60 0 0 GG 19.478614 65 0 1798 0 KEEP - Tspan18 YES MNNG_3 chr2 93844951 93844951 G A intronic Alkbh3 NA NA intronic Alkbh3 NA NA intronic ENSMUSG00000040174 NA NA 2qE1 NA NA chr2 93844951 AGAxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 180 0 0 88.744932 0.492754 0.02 0.992314 35 34 973 933 60 60 0 0 GG 27.299819 98 1 2715 20 KEEP - Alkbh3 YES MNNG_3 chr3 101386644 101386644 C T exonic Atp1a1 synonymous SNV NM_144900:c.G2091A:p.Q697Q exonic Atp1a1 synonymous SNV uc008qrj.1:c.G2091A:p.Q697Q exonic ENSMUSG00000033161 synonymous SNV ENSMUST00000036493:c.G2091A:p.Q697Q 3qF2.2 NA NA chr3 101386644 CTTxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 216 0 0 98.147329 0.536232 0.02 1.081394 32 37 917 1012 60 60 0 0 CC 30.972561 103 0 2927 0 KEEP - Atp1a1 YES MNNG_3 chr3 102850782 102850782 C T exonic Csde1 synonymous SNV NM_001161854:c.C1032T:p.H344H exonic Csde1 synonymous SNV uc008qsl.2:c.C78T:p.H26H exonic ENSMUSG00000068823 synonymous SNV ENSMUST00000071942:c.C1197T:p.H399H 3qF2.2 NA NA chr3 102850782 CCAxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.899312 0.899314 0.999998 99 0 0 28.616282 0.309524 0.02 -0.368259 29 13 808 337 60 60 0 0 CC 14.127544 47 0 1294 0 KEEP + Csde1 YES MNNG_3 chr3 10344820 10344820 C T exonic Zfand1 nonsynonymous SNV NM_025512:c.G461A:p.G154E exonic Zfand1 nonsynonymous SNV uc008ops.1:c.G461A:p.G154E exonic ENSMUSG00000039795 nonsynonymous SNV ENSMUST00000140634:c.G479A:p.G160E 3qA1 NA NA chr3 10344820 TCCxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 98 0 0 62.020291 0.575 0.02 -0.350743 17 23 471 629 60 60 0 0 CC 14.43757 48 0 1333 0 KEEP - Zfand1 YES MNNG_3 chr3 104605684 104605684 G A intronic Mov10 NA NA intronic Mov10 NA NA intronic ENSMUSG00000002227 NA NA 3qF2.2 NA NA chr3 104605684 GGAxCAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 72 0 0 35.273497 0.466667 0.02 -0.263048 16 14 447 376 60 60 0 0 GG 10.766511 36 0 988 0 KEEP - Mov10 YES MNNG_3 chr3 105762989 105762989 G A exonic Wdr77 synonymous SNV NM_027432:c.G234A:p.Q78Q exonic Wdr77 synonymous SNV uc008qvo.1:c.G234A:p.Q78Q exonic ENSMUSG00000000561 synonymous SNV ENSMUST00000010278:c.G234A:p.Q78Q 3qF2.2 NA NA chr3 105762989 CCAxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 99 2 0 55.864717 0.522727 0.02 -0.384991 21 23 595 582 60 60 0 0 GG 13.535905 45 0 1278 0 KEEP + Wdr77 YES MNNG_3 chr3 107295992 107295992 G A exonic Slc6a17 synonymous SNV NM_172271:c.C738T:p.I246I exonic Slc6a17 synonymous SNV uc008qxb.1:c.C738T:p.I246I exonic ENSMUSG00000027894 synonymous SNV ENSMUST00000168211:c.C615T:p.I205I 3qF2.3 NA NA chr3 107295992 CTGxATG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38739 0.387407 0.999957 57 0 0 19.369135 0.4 0.02 -0.175375 12 8 341 214 60 60 0 0 GG 7.820923 26 0 733 0 KEEP - Slc6a17 YES MNNG_3 chr3 107559549 107559549 C T exonic Csf1 nonsynonymous SNV NM_001113529:c.G148A:p.V50I exonic Csf1 nonsynonymous SNV uc008qxk.2:c.G148A:p.V50I exonic ENSMUSG00000014599 nonsynonymous SNV ENSMUST00000014743:c.G148A:p.V50I 3qF2.3 NA NA chr3 107559549 GGAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353904 0.353947 0.999879 48 1 0 22.17112 0.5 0.02 -0.157811 9 9 246 233 60 60 0 0 CC 6.617639 22 0 618 0 KEEP - Csf1 YES MNNG_3 chr3 107833624 107833624 C T intergenic "Gstm1(dist=12733),Gstm4(dist=9702)" NA NA intergenic "Gstm1(dist=12733),Gstm4(dist=9702)" NA NA ncRNA_intronic ENSMUSG00000081688 NA NA 3qF2.3 "Score=0.914716;Name=No.81884,chr3:107787296" NA chr3 107833624 GCTxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 226 0 20 85.570813 0.492537 0.02 1.009877 34 33 943 900 60 60 0 0 CC 37.291669 124 0 3490 0 KEEP NA Gstm1 YES MNNG_3 chr3 108624842 108624842 T G intronic Stxbp3a NA NA intronic Stxbp3a NA NA intronic ENSMUSG00000027882 NA NA 3qF3 NA NA chr3 108624842 TGTxACT T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 109 0 0 51.767503 0.454545 0.02 -0.394387 24 20 605 554 60 60 0 0 TT 16.53324 55 0 1446 0 KEEP - Stxbp3a NO MNNG_3 chr3 108784149 108784149 C T exonic Fam102b nonsynonymous SNV NM_001163567:c.G565A:p.A189T exonic Fam102b nonsynonymous SNV uc008rac.2:c.G565A:p.A189T exonic ENSMUSG00000040339 nonsynonymous SNV ENSMUST00000046924:c.G472A:p.A158T 3qF3 NA NA chr3 108784149 TTGxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 93 0 0 39.547563 0.457143 0.02 -0.306895 19 16 539 424 60 60 0 0 CC 14.740104 49 0 1395 0 KEEP - Fam102b YES MNNG_3 chr3 113909420 113909420 G A intronic Col11a1 NA NA intronic Col11a1 NA NA intronic ENSMUSG00000027966 NA NA 3qF3 NA NA chr3 113909420 CGTxTGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 147 0 0 68.857306 0.5 0.02 0.877335 29 29 806 725 60 60 0 0 GG 20.753484 69 0 1930 0 KEEP + Col11a1 YES MNNG_3 chr3 115415878 115415878 C T UTR5 S1pr1 NA NA UTR5 S1pr1 NA NA UTR5 ENSMUSG00000045092 NA NA 3qG1 NA NA chr3 115415878 GTCxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 116 2 0 70.363839 0.519231 0.02 1.141932 25 27 680 731 60 60 0 0 CC 14.438306 48 0 1345 0 KEEP - S1pr1 YES MNNG_3 chr3 121709773 121709773 C T exonic Arhgap29 synonymous SNV NM_172525:c.C1866T:p.S622S exonic Arhgap29 synonymous SNV uc008rek.1:c.C537T:p.S179S exonic ENSMUSG00000039831 synonymous SNV ENSMUST00000037958:c.C1866T:p.S622S 3qG1 NA NA chr3 121709773 ATCxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 235 0 0 106.466828 0.493976 0.02 0.967426 42 41 1171 1119 60 60 0 0 CC 34.288099 124 1 3413 28 KEEP + Arhgap29 YES MNNG_3 chr3 126644668 126644668 G A exonic Ank2 nonsynonymous SNV NM_001034168:c.C1322T:p.S441L exonic Ank2 nonsynonymous SNV uc008rgt.1:c.C1322T:p.S441L exonic ENSMUSG00000032826 nonsynonymous SNV ENSMUST00000106395:c.C7493T:p.S2498L 3qG2 NA NA chr3 126644668 ACTxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 112 0 0 50.948688 0.571429 0.02 -0.306858 15 20 423 518 60 60 0 0 GG 17.742046 59 0 1685 0 KEEP - Ank2 YES MNNG_3 chr3 130269335 130269335 C T intronic Col25a1 NA NA intronic Col25a1 NA NA intronic ENSMUSG00000058897 NA NA 3qG3 NA NA chr3 130269335 CATxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.194952 0.196312 0.993072 28 0 0 21.761857 0.571429 0.02 -0.122769 6 8 172 221 60 60 0 0 CC 3.309313 11 0 319 0 KEEP + Col25a1 YES MNNG_3 chr3 131837961 131837961 C T exonic Dkk2 synonymous SNV NM_020265:c.C402T:p.I134I exonic Dkk2 synonymous SNV uc008rjw.2:c.C402T:p.I134I exonic ENSMUSG00000028031 synonymous SNV ENSMUST00000029665:c.C402T:p.I134I 3qG3 NA NA chr3 131837961 CATxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 130 0 0 32.512849 0.40625 0.02 -0.289383 19 13 540 357 60 60 0 0 CC 23.459722 78 0 2195 0 KEEP + Dkk2 YES MNNG_3 chr3 132330321 132330321 C T intronic Aimp1 NA NA intronic Aimp1 NA NA intronic ENSMUSG00000028029 NA NA 3qG3 NA NA chr3 132330321 ATTxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077064 0.077336 0.99649 28 0 0 16.872171 0.666667 0.02 -0.07892 3 6 85 165 60 60 0 0 CC 4.509125 15 0 421 0 KEEP - Aimp1 YES MNNG_3 chr3 132612939 132612939 C T exonic Npnt synonymous SNV NM_001029836:c.G69A:p.G23G exonic Npnt synonymous SNV uc008rkc.1:c.G69A:p.G23G exonic ENSMUSG00000040998 synonymous SNV ENSMUST00000042729:c.G69A:p.G23G 3qG3 NA NA chr3 132612939 CCTxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 54 0 0 26.05935 0.526316 0.02 -0.166601 9 10 252 270 60 60 0 0 CC 7.218899 24 0 675 0 KEEP - Npnt YES MNNG_3 chr3 137889209 137889209 G A exonic Adh7 nonsynonymous SNV NM_009626:c.G619A:p.V207I exonic Adh7 nonsynonymous SNV uc008rnd.2:c.G619A:p.V207I exonic ENSMUSG00000055301 nonsynonymous SNV ENSMUST00000090171:c.G619A:p.V207I 3qG3 NA NA chr3 137889209 TCAxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.934492 0.934492 1 126 2 0 56.023403 0.5 0.02 -0.403085 23 23 612 589 60 60 0 0 GG 17.143535 57 0 1577 0 KEEP + Adh7 YES MNNG_3 chr3 138553821 138553821 G A exonic Tspan5 synonymous SNV NM_019571:c.G255A:p.R85R exonic Tspan5 synonymous SNV uc008rnp.1:c.G255A:p.R85R exonic ENSMUSG00000028152 synonymous SNV ENSMUST00000029800:c.G255A:p.R85R 3qH1 NA NA chr3 138553821 TCGxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 283 2 0 105.271961 0.403846 0.02 2.559639 62 42 1699 1157 60 60 0 0 GG 46.831889 156 0 4282 0 KEEP + Tspan5 YES MNNG_3 chr3 142229500 142229500 C T exonic Gbp3 synonymous SNV NM_018734:c.C798T:p.I266I exonic Gbp3 synonymous SNV uc008rov.1:c.C798T:p.I266I exonic ENSMUSG00000028268 synonymous SNV ENSMUST00000106221:c.C798T:p.I266I 3qH1 NA NA chr3 142229500 CATxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 132 2 0 65.068803 0.5 0.02 1.150144 25 25 701 682 60 60 0 0 CC 21.660103 72 0 2071 0 KEEP + Gbp3 YES MNNG_3 chr3 142293658 142293658 C T exonic Gbp2 synonymous SNV NM_010260:c.C804T:p.T268T exonic Gbp2 synonymous SNV uc008roy.1:c.C804T:p.T268T exonic ENSMUSG00000028270 synonymous SNV ENSMUST00000165774:c.C804T:p.T268T 3qH1 NA NA chr3 142293658 CACxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 45 0 0 26.597116 0.555556 0.02 -0.157835 8 10 224 272 60 60 0 0 CC 6.015638 20 0 561 0 KEEP + Gbp2 YES MNNG_3 chr3 144525734 144525734 C T intergenic "Clca4(dist=13468),Gm6289(dist=16555)" NA NA intergenic "Clca4(dist=13468),Gm6289(dist=16555)" NA NA intergenic "ENSMUSG00000037033(dist=13413),ENSMUSG00000074196(dist=16552)" NA NA 3qH2 NA NA chr3 144525734 CGTxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 158 2 0 67.736361 0.435484 0.02 1.053684 35 27 987 733 60 60 0 0 CC 19.854028 66 0 1881 0 KEEP NA Clca4 YES MNNG_3 chr3 144552734 144552734 C T UTR5 Gm6289 NA NA UTR5 Gm6289 NA NA UTR5 ENSMUSG00000074196 NA NA 3qH2 NA NA chr3 144552734 AGGxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 88 0 0 49.032294 0.513514 0.02 -0.333023 18 19 477 511 60 60 0 0 CC 13.228602 44 0 1216 0 KEEP - Gm6289 YES MNNG_3 chr3 145311370 145311370 C T exonic Cyr61 nonsynonymous SNV NM_010516:c.G628A:p.G210S exonic Cyr61 nonsynonymous SNV uc008rqq.2:c.G628A:p.G210S exonic ENSMUSG00000028195 nonsynonymous SNV ENSMUST00000029846:c.G628A:p.G210S 3qH2 NA NA chr3 145311370 TGCxAAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 285 3 0 114.734403 0.479592 0.02 0.835981 51 47 1444 1218 60 60 0 0 CC 45.726408 152 0 4366 0 KEEP - Cyr61 YES MNNG_3 chr3 14603661 14603661 C T exonic E2f5 synonymous SNV NM_007892:c.C609T:p.Y203Y exonic E2f5 synonymous SNV uc008oqk.1:c.C609T:p.Y203Y exonic ENSMUSG00000027552 synonymous SNV ENSMUST00000029069:c.C609T:p.Y203Y 3qA1 NA NA chr3 14603661 ATAxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 57 0 0 37.446278 0.625 0.02 -0.210355 9 15 243 372 60 60 0 0 CC 8.420847 28 0 760 0 KEEP + E2f5 YES MNNG_3 chr3 148509915 148509915 G A exonic Lphn2 nonsynonymous SNV NM_001081298:c.C1915T:p.H639Y exonic Lphn2 nonsynonymous SNV uc008rsa.1:c.C352T:p.H118Y exonic ENSMUSG00000028184 nonsynonymous SNV ENSMUST00000037655:c.C352T:p.H118Y 3qH3 NA NA chr3 148509915 TGTxCGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 104 2 0 59.168111 0.545455 0.02 -0.385747 20 24 562 609 60 60 0 0 GG 12.934337 43 0 1210 0 KEEP - Lphn2 YES MNNG_3 chr3 153575031 153575031 C T UTR5 Rabggtb NA NA UTR5 Rabggtb NA NA UTR5 ENSMUSG00000038975 NA NA 3qH3 NA NA chr3 153575031 CATxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 126 0 0 70.12206 0.509434 0.02 1.132607 26 27 732 732 60 60 0 0 CC 19.251476 64 0 1813 0 KEEP - Rabggtb YES MNNG_3 chr3 17685701 17685701 C T intergenic "Ythdf3(dist=1568663),2610100L16Rik(dist=4220)" NA NA intergenic "Ythdf3(dist=1568663),2610100L16Rik(dist=4220)" NA NA exonic ENSMUSG00000074674 nonsynonymous SNV ENSMUST00000099198:c.G205A:p.V69I 3qA1 NA NA chr3 17685701 AGAxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 114 0 0 73.57559 0.568627 0.02 1.150227 22 29 606 749 60 60 0 0 CC 15.339291 51 0 1412 0 KEEP NA Ythdf3 YES MNNG_3 chr3 32360357 32360357 C T intronic Pik3ca NA NA intronic Pik3ca NA NA intronic ENSMUSG00000027665 NA NA 3qA3 NA NA chr3 32360357 CCAxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 55 0 0 23.188105 0.416667 0.02 -0.210407 14 10 380 255 60 60 0 0 CC 6.917579 23 0 631 0 KEEP + Pik3ca YES MNNG_3 chr3 32626564 32626564 A C exonic Mrpl47 nonsynonymous SNV NM_029017:c.T711G:p.H237Q exonic Mrpl47 nonsynonymous SNV uc008owp.2:c.T711G:p.H237Q exonic ENSMUSG00000037531 nonsynonymous SNV ENSMUST00000043966:c.T711G:p.H237Q 3qA3 "Score=0.900497;Name=No.77699,chr2:150132128" NA chr3 32626564 TGCxTGG A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 99 0 0 12.102808 0.12 0.02 -0.438287 44 6 1119 172 60 37 0 0 AA 13.822266 46 0 1231 0 KEEP - Mrpl47 NO MNNG_3 chr3 32780339 32780339 C T exonic Usp13 nonsynonymous SNV NM_001013024:c.C991T:p.P331S exonic Usp13 nonsynonymous SNV uc008owr.1:c.C991T:p.P331S exonic ENSMUSG00000056900 nonsynonymous SNV ENSMUST00000072312:c.C991T:p.P331S 3qA3 NA NA chr3 32780339 GGCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 107 0 0 40.389336 0.444444 0.02 -0.324441 20 16 559 435 60 60 0 0 CC 17.684028 59 0 1614 0 KEEP + Usp13 YES MNNG_3 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.94173 0.941741 0.999988 80 3 0 18.427537 0.209302 0.02 -0.411372 34 9 918 237 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 YES MNNG_3 chr3 40430859 40430859 C T intergenic "1700017G19Rik(dist=9025),Intu(dist=8830)" NA NA exonic Intu synonymous SNV uc008pbg.1:c.C66T:p.D22D exonic ENSMUSG00000060798 synonymous SNV ENSMUST00000061590:c.C66T:p.D22D 3qB NA NA chr3 40430859 GGAxTCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227888 0.229173 0.994391 31 0 0 23.604359 0.6 0.02 -0.131521 6 9 172 237 60 60 0 0 CC 3.9089 13 0 352 0 KEEP NA 1700017G19Rik YES MNNG_3 chr3 63894026 63894026 C T exonic Vmn2r1 synonymous SNV NM_019918:c.C1180T:p.L394L exonic Vmn2r1 synonymous SNV uc008pkf.1:c.C1180T:p.L394L exonic ENSMUSG00000027824 synonymous SNV ENSMUST00000029406:c.C1180T:p.L394L 3qE1 NA NA chr3 63894026 AGAxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 315 0 0 196.39903 0.549296 0.02 2.03919 64 78 1785 2017 60 60 0 0 CC 42.71089 142 0 3962 0 KEEP + Vmn2r1 YES MNNG_3 chr3 63909413 63909413 C T downstream Vmn2r1 NA NA downstream Vmn2r1 NA NA downstream ENSMUSG00000027824 NA NA 3qE1 "Score=0.956707;Name=No.81586,chr3:63920155" NA chr3 63909413 TGTxACC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 47 0 0 13.961902 0.461538 0.02 -0.113974 7 6 201 150 60 60 0 0 CC 8.714623 29 0 817 0 KEEP + Vmn2r1 YES MNNG_3 chr3 89975946 89975946 C T intronic Nup210l NA NA intronic Nup210l NA NA intronic ENSMUSG00000027939 NA NA 3qF1 NA NA chr3 89975946 CGAxTAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 115 2 0 41.152675 0.351852 0.02 1.027372 35 19 950 473 60 60 0 0 CC 13.234258 44 0 1223 0 KEEP + Nup210l YES MNNG_3 chr3 94315032 94315032 C T exonic Snx27 nonsynonymous SNV NM_001082484:c.G1165A:p.G389S exonic Snx27 nonsynonymous SNV uc008qgr.1:c.G1165A:p.G389S exonic ENSMUSG00000028136 nonsynonymous SNV ENSMUST00000107281:c.G892A:p.G298S 3qF2.1 NA NA chr3 94315032 AACxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 117 0 0 43.694 0.375 0.02 -0.420924 30 18 860 489 60 60 0 0 CC 15.329793 51 0 1441 0 KEEP - Snx27 YES MNNG_3 chr3 95153746 95153746 C T intronic Setdb1 NA NA intronic Setdb1 NA NA intronic ENSMUSG00000015697 NA NA 3qF2.1 NA NA chr3 95153746 ATAxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 286 6 0 94.945367 0.390476 0.02 2.274133 64 41 1748 1059 60 60 0 0 CC 39.087843 130 0 3565 0 KEEP - Setdb1 YES MNNG_3 chr3 95636433 95636433 C T intronic Prpf3 NA NA intronic Prpf3 NA NA intronic ENSMUSG00000015748 NA NA 3qF2.1 NA NA chr3 95636433 AACxACG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 176 0 0 98.528954 0.506667 0.02 1.037807 37 38 1028 1030 60 60 0 0 CC 25.867438 86 0 2410 0 KEEP - Prpf3 YES MNNG_3 chr3 95845357 95845357 C T exonic Vps45 synonymous SNV NM_013841:c.G1008A:p.G336G exonic Vps45 synonymous SNV uc008qly.2:c.G1008A:p.G336G exonic ENSMUSG00000015747 synonymous SNV ENSMUST00000015891:c.G1008A:p.G336G 3qF2.1 NA NA chr3 95845357 TTCxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 70 2 0 45.500062 0.53125 0.02 -0.280609 15 17 421 470 60 60 0 0 CC 8.42159 28 0 775 0 KEEP - Vps45 YES MNNG_3 chr3 97013432 97013432 G A exonic Bcl9 nonsynonymous SNV NM_029933:c.C1868T:p.P623L exonic Bcl9 nonsynonymous SNV uc008qos.1:c.C1868T:p.P623L exonic ENSMUSG00000038256 nonsynonymous SNV ENSMUST00000166341:c.C1868T:p.P623L 3qF2.1 NA NA chr3 97013432 TGGxGGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 98 0 0 40.599563 0.484848 0.02 -0.289343 17 16 475 429 60 60 0 0 GG 15.289032 51 0 1373 0 KEEP - Bcl9 YES MNNG_3 chr3 97908431 97908431 G A exonic Notch2 nonsynonymous SNV NM_010928:c.G1841A:p.S614N exonic Notch2 nonsynonymous SNV uc008qpo.1:c.G1841A:p.S614N exonic ENSMUSG00000027878 nonsynonymous SNV ENSMUST00000079812:c.G1841A:p.S614N 3qF2.2 NA NA chr3 97908431 GCAxCCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.194952 0.196312 0.993072 27 0 0 15.814462 0.5 0.02 -0.122669 7 7 194 167 60 60 0 0 GG 3.308512 11 0 304 0 KEEP + Notch2 YES MNNG_3 chr3 99998402 99998402 C T intronic Gdap2 NA NA intronic Gdap2 NA NA intronic ENSMUSG00000027865 NA NA 3qF2.2 NA NA chr3 99998402 GTTxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 49 0 0 25.55656 0.47619 0.02 -0.184145 11 10 312 271 60 60 0 0 CC 7.511282 25 0 699 0 KEEP + Gdap2 YES MNNG_3 chr4 117562885 117562885 G T exonic Dph2 nonsynonymous SNV NM_026344:c.C906A:p.H302Q exonic Dph2 nonsynonymous SNV uc008uje.1:c.C411A:p.H137Q exonic ENSMUSG00000028540 nonsynonymous SNV ENSMUST00000030265:c.C906A:p.H302Q 4qD2.1 NA NA chr4 117562885 CAAxTGT G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 297 0 0 336.982818 1 0.02 2.23918 0 109 0 2851 0 60 0 0 GG 41.154552 137 0 3692 0 KEEP - Dph2 NO MNNG_3 chr4 140072783 140072783 C T exonic Arhgef10l nonsynonymous SNV NM_001112723:c.G3047A:p.G1016D exonic Arhgef10l nonsynonymous SNV uc008vmv.1:c.G131A:p.G44D exonic ENSMUSG00000040964 nonsynonymous SNV ENSMUST00000105797:c.G2303A:p.G768D 4qD3 NA NA chr4 140072783 TGGxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 120 0 0 8.627595 0.090909 0.02 1.116534 50 5 1345 135 60 60 0 0 CC 17.315274 58 0 1549 0 KEEP - Arhgef10l YES MNNG_3 chr4 144739007 144739007 G A exonic Vps13d nonsynonymous SNV NM_001276502:c.C4850T:p.T1617I exonic Vps13d nonsynonymous SNV uc012dox.1:c.C4832T:p.T1611I exonic ENSMUSG00000020220 nonsynonymous SNV ENSMUST00000020441:c.C4832T:p.T1611I 4qE1 NA NA chr4 144739007 TGAxTGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 24 0 0 33.935922 1 0.02 -0.096429 0 11 0 287 0 60 0 0 GG 3.609021 12 0 328 0 KEEP - Vps13d YES MNNG_3 chr4 148722043 148722043 G A exonic Ube4b synonymous SNV NM_022022:c.C2532T:p.F844F exonic Ube4b synonymous SNV uc012dpr.1:c.C2532T:p.F844F exonic ENSMUSG00000028960 synonymous SNV ENSMUST00000103212:c.C2532T:p.F844F 4qE2 NA NA chr4 148722043 ATAxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 130 2 0 169.140871 1 0.02 1.132647 0 53 0 1439 0 60 0 0 GG 18.050338 60 0 1732 0 KEEP - Ube4b YES MNNG_3 chr4 151386428 151386428 G A exonic Klhl21 synonymous SNV NM_001033352:c.G1041A:p.R347R exonic Klhl21 synonymous SNV uc008vyy.1:c.G1041A:p.R347R exonic ENSMUSG00000073700 synonymous SNV ENSMUST00000097773:c.G1041A:p.R347R 4qE2 NA NA chr4 151386428 CCGxCTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 149 0 0 165.293243 1 0.02 1.124043 0 54 0 1396 0 60 0 0 GG 17.85293 69 1 1866 27 KEEP + Klhl21 YES MNNG_3 chr4 151426761 151426761 G A exonic Nol9 synonymous SNV NM_001159599:c.G1641A:p.Q547Q exonic Nol9 synonymous SNV uc008vzc.2:c.G1641A:p.Q547Q exonic ENSMUSG00000028948 synonymous SNV ENSMUST00000084116:c.G1641A:p.Q547Q 4qE2 NA NA chr4 151426761 CCAxCTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 82 0 0 57.527705 0.95 0.02 -0.175342 1 19 27 502 60 60 0 0 GG 14.135831 47 0 1304 0 KEEP + Nol9 YES MNNG_3 chr4 151753619 151753619 G A splicing "Chd5(NM_029216:exon29:c.4434+1G>A,NM_001081376:exon30:c.4545+1G>A)" NA NA splicing "Chd5(uc008wai.1:exon30:c.4545+1G>A,uc012dqc.1:exon29:c.4434+1G>A,uc008waj.1:exon6:c.699+1G>A)" NA NA splicing "ENSMUSG00000005045(ENSMUST00000164662:exon29:c.4434+1G>A,ENSMUST00000030775:exon30:c.4545+1G>A,ENSMUST00000005175:exon30:c.4545+1G>A,ENSMUST00000165243:exon6:c.810+1G>A)" NA NA 4qE2 NA NA chr4 151753619 AAGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 283 0 0 172.255376 1 0.02 1.000331 0 56 0 1456 0 60 0 0 GG 47.820183 159 0 4368 0 KEEP + Chd5 YES MNNG_3 chr4 43006583 43006583 C A exonic Vcp synonymous SNV NM_009503:c.G420T:p.L140L exonic Vcp synonymous SNV uc008sor.2:c.G420T:p.L140L exonic ENSMUSG00000028452 synonymous SNV ENSMUST00000030164:c.G420T:p.L140L 4qA5 NA NA chr4 43006583 TTCxAGG C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 187 0 2 197.628085 1 0.02 1.044962 0 62 0 1681 0 60 0 0 CC 27.975725 93 0 2651 0 KEEP - Vcp NO MNNG_3 chr4 60594904 60594904 T C exonic Mup10 synonymous SNV NM_001122647:c.A57G:p.E19E exonic Mup10 synonymous SNV uc008tan.2:c.A57G:p.E19E exonic ENSMUSG00000078680 synonymous SNV ENSMUST00000098047:c.A57G:p.E19E 4qB3 "Score=0.987494;Name=No.86160,chr4:60810643" NA chr4 60594904 TTCxTCT T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 532 1 238 8.451458 0.067568 0.02 0.948441 69 5 1920 140 36 36 0 0 TT 104.9561 349 0 9719 0 KEEP - Mup10 NO MNNG_3 chr4 65056150 65056150 T G exonic Astn2 nonsynonymous SNV NM_019514:c.A3620C:p.K1207T exonic Astn2 nonsynonymous SNV uc008tho.1:c.A3620C:p.K1207T exonic ENSMUSG00000028373 nonsynonymous SNV ENSMUST00000084496:c.A3620C:p.K1207T 4qC1 NA NA chr4 65056150 AACxTTT T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162444 0.162467 0.99986 40 0 0 8.122604 0.307692 0.02 -0.113957 9 4 248 97 60 60 0 0 TT 5.715128 19 0 532 0 KEEP - Astn2 NO MNNG_3 chr4 73589046 73589046 C T exonic 2310002L09Rik nonsynonymous SNV NM_027104:c.G220A:p.E74K exonic 2310002L09Rik nonsynonymous SNV uc008tjf.1:c.G220A:p.E74K exonic ENSMUSG00000028396 nonsynonymous SNV ENSMUST00000030101:c.G220A:p.E74K 4qC3 NA NA chr4 73589046 CTTxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 73 0 0 116.316686 1 0.02 -0.333154 0 37 0 987 0 60 0 0 CC 8.421856 28 0 784 0 KEEP - 2310002L09Rik YES MNNG_3 chr4 73874810 73874810 C T intergenic "Frmd3(dist=26692),Kdm4c(dist=13591)" NA NA intergenic "Frmd3(dist=26692),Kdm4c(dist=13591)" NA NA ncRNA_exonic ENSMUSG00000083767 NA NA 4qC3 "Score=0.898354;Name=No.87471,chr6:3268583" NA chr4 73874810 TGAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 138 0 24 103.580929 1 0.02 -0.315243 0 34 0 874 0 60 0 0 CC 23.759075 79 0 2149 0 KEEP NA Frmd3 YES MNNG_3 chr4 75730275 75730275 C T exonic Ptprd synonymous SNV NM_011211:c.G2148A:p.L716L exonic Ptprd synonymous SNV uc008tjn.1:c.G186A:p.L62L exonic ENSMUSG00000028399 synonymous SNV ENSMUST00000173662:c.G813A:p.L271L 4qC3 NA NA chr4 75730275 ATCxAAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 100 0 0 118.991786 1 0.02 -0.341914 0 38 0 1009 0 60 0 0 CC 15.041132 50 0 1425 0 KEEP - Ptprd YES MNNG_3 chr4 81966445 81966445 C T exonic Nfib nonsynonymous SNV NM_001113209:c.G1427A:p.G476D exonic Nfib nonsynonymous SNV uc008tjz.2:c.G1283A:p.G428D exonic ENSMUSG00000008575 nonsynonymous SNV ENSMUST00000050872:c.G1427A:p.G476D 4qC3 NA NA chr4 81966445 GTGxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 153 0 0 173.291853 0.982759 0.02 0.99196 1 57 30 1484 60 60 0 0 CC 21.306003 71 0 1931 0 KEEP - Nfib YES MNNG_3 chr5 100408512 100408512 C T upstream Hnrnpd NA NA upstream Hnrnpd NA NA exonic ENSMUSG00000035364 nonsynonymous SNV ENSMUST00000046721:c.C433T:p.P145S 5qE4 NA NA chr5 100408512 TTCxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 80 0 0 24.345069 0.357143 0.02 -0.245526 18 10 500 275 60 60 0 0 CC 13.531568 45 0 1237 0 KEEP - Hnrnpd YES MNNG_3 chr5 100817584 100817584 C T exonic Sec31a nonsynonymous SNV NM_026969:c.G1592A:p.S531N exonic Sec31a nonsynonymous SNV uc008yhk.2:c.G1592A:p.S531N exonic ENSMUSG00000035325 nonsynonymous SNV ENSMUST00000094578:c.G1592A:p.S531N 5qE4 NA NA chr5 100817584 GGAxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 121 2 0 64.690394 0.555556 0.02 -0.403318 20 25 554 662 60 60 0 0 CC 15.60959 52 0 1424 0 KEEP - Sec31a YES MNNG_3 chr5 103321865 103321865 C T exonic Arhgap24 nonsynonymous SNV NM_146161:c.C1648T:p.L550F exonic Arhgap24 nonsynonymous SNV uc008yiz.1:c.C1654T:p.L552F exonic ENSMUSG00000057315 nonsynonymous SNV ENSMUST00000070000:c.C1657T:p.L553F 5qE5 NA NA chr5 103321865 GCAxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 97 0 0 45.069754 0.529412 0.02 -0.298076 16 18 435 467 60 60 0 0 CC 15.34053 51 0 1429 0 KEEP + Arhgap24 YES MNNG_3 chr5 109302278 109302278 C T intergenic "Vmn2r9(dist=20749),Vmn2r10(dist=122280)" NA NA intergenic "AK142627(dist=15037),Vmn2r10(dist=120153)" NA NA intergenic "ENSMUSG00000072766(dist=4905),ENSMUSG00000067010(dist=122280)" NA NA 5qF "Score=0.923563;Name=No.90946,chr5:109493268" NA chr5 109302278 AAGxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 259 0 10 59.546258 0.438596 0.02 1.000256 32 25 884 646 60 60 0 0 CC 49.610059 165 0 4483 0 KEEP NA Vmn2r9 YES MNNG_3 chr5 109476819 109476819 C T intronic Vmn2r11 NA NA intronic Vmn2r11 NA NA intronic ENSMUSG00000091450 NA NA 5qF "Score=0.915793;Name=No.90944,chr5:109264529" NA chr5 109476819 AACxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 591 10 1 188.915748 0.521429 0.02 2.154185 67 73 1859 1962 60 60 0 0 CC 106.438577 354 0 9949 0 KEEP - Vmn2r11 YES MNNG_3 chr5 109650339 109650339 T G exonic Vmn2r14 nonsynonymous SNV NM_001104625:c.A386C:p.D129A exonic Vmn2r14 nonsynonymous SNV uc009vdl.1:c.A386C:p.D129A exonic ENSMUSG00000091059 nonsynonymous SNV ENSMUST00000170341:c.A386C:p.D129A 5qF NA NA chr5 109650339 TAAxCAG T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 76 0 0 22.037832 0.3 0.02 -0.262998 21 9 534 257 60 60 0 0 TT 13.23214 44 0 1183 0 KEEP - Vmn2r14 NO MNNG_3 chr5 109650391 109650391 C T exonic Vmn2r14 nonsynonymous SNV NM_001104625:c.G334A:p.G112R exonic Vmn2r14 nonsynonymous SNV uc009vdl.1:c.G334A:p.G112R exonic ENSMUSG00000091059 nonsynonymous SNV ENSMUST00000170341:c.G334A:p.G112R 5qF NA NA chr5 109650391 CTCxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 124 0 0 58.468072 0.52381 0.02 -0.368278 20 22 551 606 60 60 0 0 CC 21.055167 70 0 1951 0 KEEP - Vmn2r14 YES MNNG_3 chr5 110533622 110533622 G A exonic Gtpbp6 nonsynonymous SNV NM_145147:c.C1151T:p.A384V exonic Gtpbp6 nonsynonymous SNV uc012eay.1:c.C530T:p.A177V exonic ENSMUSG00000033434 nonsynonymous SNV ENSMUST00000077220:c.C1151T:p.A384V 5qF NA NA chr5 110533622 GTGxCCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 81 0 0 43.726865 0.486486 0.02 -0.332939 19 18 525 463 60 60 0 0 GG 10.227277 34 0 955 0 KEEP - Gtpbp6 YES MNNG_3 chr5 110741047 110741047 C T exonic Pole synonymous SNV NM_011132:c.C3297T:p.F1099F exonic Pole synonymous SNV uc008yqm.2:c.C3297T:p.F1099F exonic ENSMUSG00000007080 synonymous SNV ENSMUST00000007296:c.C3297T:p.F1099F 5qF NA NA chr5 110741047 TTTxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.22917 0.229173 0.999988 53 0 0 18.137266 0.466667 0.02 -0.131533 8 7 223 193 60 60 0 0 CC 8.121126 27 0 759 0 KEEP + Pole YES MNNG_3 chr5 114615912 114615912 C T exonic Acacb nonsynonymous SNV NM_133904:c.C386T:p.P129L exonic Acacb nonsynonymous SNV uc008yzi.2:c.C386T:p.P129L exonic ENSMUSG00000042010 nonsynonymous SNV ENSMUST00000031583:c.C386T:p.P129L 5qF NA NA chr5 114615912 GGCxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.979526 0.979526 1 136 2 0 64.394449 0.464286 0.02 1.106599 30 26 796 688 60 60 0 0 CC 20.745308 69 0 1873 0 KEEP + Acacb YES MNNG_3 chr5 114839184 114839184 C T intronic Ube3b NA NA intronic Ube3b NA NA intronic ENSMUSG00000029577 NA NA 5qF NA NA chr5 114839184 AAAxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322772 0.322807 0.999892 50 0 0 19.744315 0.444444 0.02 -0.157827 10 8 277 213 60 60 0 0 CC 6.898364 23 0 628 0 KEEP + Ube3b YES MNNG_3 chr5 115386979 115386979 C T exonic Oasl1 nonsynonymous SNV NM_145209:c.C1088T:p.T363I exonic Oasl1 nonsynonymous SNV uc008zcx.1:c.C248T:p.T83I exonic ENSMUSG00000041827 nonsynonymous SNV ENSMUST00000112143:c.C1088T:p.T363I 5qF NA NA chr5 115386979 TAAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780989 0.78106 0.999909 68 0 0 46.819769 0.558824 0.02 -0.29805 15 19 405 479 60 60 0 0 CC 7.217736 24 0 650 0 KEEP + Oasl1 YES MNNG_3 chr5 115932615 115932615 C T intronic Sirt4 NA NA intronic Sirt4 NA NA intronic ENSMUSG00000029524 NA NA 5qF NA NA chr5 115932615 AAAxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 155 0 0 64.625816 0.482143 0.02 1.009086 29 27 782 686 60 60 0 0 CC 18.212472 70 1 1871 26 KEEP - Sirt4 YES MNNG_3 chr5 120580779 120580779 G A exonic Rbm19 nonsynonymous SNV NM_028762:c.G1462A:p.A488T exonic Rbm19 nonsynonymous SNV uc008zha.1:c.G1462A:p.A488T exonic ENSMUSG00000029594 nonsynonymous SNV ENSMUST00000031590:c.G1462A:p.A488T 5qF NA NA chr5 120580779 AACxCCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999999 96 0 0 30.115355 0.358974 0.02 -0.341778 25 14 662 345 60 60 0 0 GG 10.497743 35 0 915 0 KEEP + Rbm19 YES MNNG_3 chr5 122115089 122115089 C T intronic Brap NA NA intronic Brap NA NA intronic ENSMUSG00000029458 NA NA 5qF NA NA chr5 122115089 GGTxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 139 0 0 70.72842 0.509434 0.02 1.132712 26 27 724 738 60 60 0 0 CC 21.658251 72 0 2039 0 KEEP + Brap YES MNNG_3 chr5 124971410 124971410 C T exonic Rilpl1 nonsynonymous SNV NM_021430:c.G310A:p.E104K exonic Rilpl1 nonsynonymous SNV uc008zpz.1:c.G310A:p.E104K exonic ENSMUSG00000029392 nonsynonymous SNV ENSMUST00000062153:c.G310A:p.E104K 5qF NA NA chr5 124971410 GCTxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 93 0 0 49.63241 0.513514 0.02 -0.324328 18 19 494 517 60 60 0 0 CC 12.935163 43 0 1221 0 KEEP - Rilpl1 YES MNNG_3 chr5 124999924 124999924 C T UTR3 Tmed2 NA NA UTR3 Tmed2 NA NA UTR3 ENSMUSG00000029390 NA NA 5qF "Score=0.996496;Name=No.92344,chr9:33536311" NA chr5 124999924 CTCxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043467 0.043787 0.992708 33 0 12 7.254288 0.428571 0.02 -0.061376 4 3 111 79 46 23 0 0 CC 4.21102 14 0 392 0 KEEP + Tmed2 YES MNNG_3 chr5 125198784 125198784 C T intronic Atp6v0a2 NA NA intronic Atp6v0a2 NA NA intronic ENSMUSG00000038023 NA NA 5qF NA NA chr5 125198784 CAGxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 76 0 0 41.18746 0.472222 0.02 -0.315575 19 17 517 439 60 60 0 0 CC 8.121522 27 0 759 0 KEEP + Atp6v0a2 YES MNNG_3 chr5 125316585 125316585 C T exonic Ccdc92 synonymous SNV NM_144819:c.G249A:p.E83E exonic Ccdc92 synonymous SNV uc008zqr.1:c.G249A:p.E83E exonic ENSMUSG00000037979 synonymous SNV ENSMUST00000036206:c.G249A:p.E83E 5qF NA NA chr5 125316585 TTCxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 364 4 0 95.221377 0.215686 0.02 4.647463 160 44 4505 1204 70 60 0 0 CC 35.493269 118 0 3336 0 KEEP - Ccdc92 YES MNNG_3 chr5 125902995 125902995 C T exonic Dhx37 nonsynonymous SNV NM_203319:c.G1771A:p.A591T exonic Dhx37 nonsynonymous SNV uc008zrq.1:c.G1771A:p.A591T exonic ENSMUSG00000029480 nonsynonymous SNV ENSMUST00000031443:c.G1402A:p.A468T 5qG1.1 NA NA chr5 125902995 GGGxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322803 0.322807 0.999988 56 0 0 18.94278 0.444444 0.02 -0.15781 10 8 277 205 60 60 0 0 CC 8.117844 27 0 740 0 KEEP - Dhx37 YES MNNG_3 chr5 129634294 129634294 C T intronic Gpr133 NA NA intronic Gpr133 NA NA ncRNA_exonic ENSMUSG00000060419 NA NA 5qG1.3 NA NA chr5 129634294 CACxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 64 1 1 42.822947 0.571429 0.02 -0.245527 12 16 341 435 60 60 0 0 CC 9.024786 30 0 858 0 KEEP + Gpr133 YES MNNG_3 chr5 134644053 134644053 C T intronic Wbscr16 NA NA intronic Wbscr16 NA NA intronic ENSMUSG00000061979 NA NA 5qG2 NA NA chr5 134644053 CTCxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 209 2 0 76.997765 0.447761 0.02 1.098956 37 30 1023 827 60 60 0 0 CC 32.731778 109 0 2972 0 KEEP - Wbscr16 YES MNNG_3 chr5 136497594 136497594 C T intronic Dtx2 NA NA intronic Dtx2 NA NA intronic ENSMUSG00000004947 NA NA 5qG2 NA NA chr5 136497594 CCAxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999997 91 0 0 49.676945 0.446809 0.02 -0.412034 26 21 708 537 60 60 0 0 CC 9.023468 30 0 835 0 KEEP + Dtx2 YES MNNG_3 chr5 136707981 136707981 C T exonic Sh2b2 nonsynonymous SNV NM_018825:c.G250A:p.E84K exonic Sh2b2 nonsynonymous SNV uc009aag.1:c.G250A:p.E84K exonic ENSMUSG00000005057 nonsynonymous SNV ENSMUST00000005188:c.G250A:p.E84K 5qG2 NA NA chr5 136707981 GTTxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 57 0 0 27.097758 0.44 0.02 -0.219202 14 11 389 293 60 60 0 0 CC 8.37642 28 0 762 0 KEEP - Sh2b2 YES MNNG_3 chr5 137469158 137469158 G C exonic Plod3 nonsynonymous SNV NM_011962:c.G1772C:p.G591A exonic Plod3 nonsynonymous SNV uc009abk.2:c.G1772C:p.G591A exonic ENSMUSG00000004846 nonsynonymous SNV ENSMUST00000004968:c.G1772C:p.G591A 5qG2 NA NA chr5 137469158 ATGxCCA G C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 101 0 0 27.694455 0.266667 0.02 -0.403359 33 12 912 333 60 60 0 0 GG 12.933962 43 0 1199 0 KEEP + Plod3 NO MNNG_3 chr5 137739598 137739598 C T intronic Srrt NA NA intronic Srrt NA NA intronic ENSMUSG00000037364 NA NA 5qG2 NA NA chr5 137739598 ATCxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 143 2 0 53.442489 0.456522 0.02 -0.412123 25 21 696 572 60 60 0 0 CC 24.048661 80 0 2231 0 KEEP - Srrt YES MNNG_3 chr5 137827703 137827703 C T exonic Zan nonsynonymous SNV NM_011741:c.G15286A:p.D5096N exonic Zan nonsynonymous SNV uc012eey.1:c.G15286A:p.D5096N exonic ENSMUSG00000079173 nonsynonymous SNV ENSMUST00000164178:c.G15286A:p.D5096N 5qG2 NA NA chr5 137827703 CGTxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 167 0 0 71.205346 0.4375 0.02 1.036145 36 28 1018 769 60 60 0 0 CC 23.429958 78 0 2181 0 KEEP - Zan YES MNNG_3 chr5 137895193 137895193 C T exonic Zan nonsynonymous SNV NM_011741:c.G4741A:p.D1581N exonic Zan nonsynonymous SNV uc012eey.1:c.G4741A:p.D1581N exonic ENSMUSG00000079173 nonsynonymous SNV ENSMUST00000164178:c.G4741A:p.D1581N 5qG2 NA NA chr5 137895193 CATxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227714 0.229173 0.993634 35 0 0 27.820047 0.666667 0.02 -0.131528 5 10 140 272 60 60 0 0 CC 3.60708 12 0 330 0 KEEP - Zan YES MNNG_3 chr5 137965473 137965473 C T exonic Gigyf1 synonymous SNV NM_031408:c.C2244T:p.V748V exonic Gigyf1 synonymous SNV uc009acp.1:c.C882T:p.V294V exonic ENSMUSG00000029714 synonymous SNV ENSMUST00000031727:c.C2244T:p.V748V 5qG2 NA NA chr5 137965473 TGTxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353932 0.353947 0.999957 54 0 0 25.859768 0.526316 0.02 -0.166583 9 10 245 268 60 60 0 0 CC 7.820832 26 0 732 0 KEEP + Gigyf1 YES MNNG_3 chr5 138018978 138018978 C T exonic Tfr2 nonsynonymous SNV NM_015799:c.C1036T:p.L346F exonic Trfr2 nonsynonymous SNV uc009acy.1:c.C1168T:p.L390F exonic ENSMUSG00000029716 nonsynonymous SNV ENSMUST00000111009:c.C790T:p.L264F 5qG2 NA NA chr5 138018978 GGCxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457694 0.457757 0.999863 45 0 0 42.392444 0.714286 0.02 -0.192908 6 15 171 407 60 60 0 0 CC 6.015781 20 0 558 0 KEEP + Tfr2 YES MNNG_3 chr5 138712055 138712055 C T exonic Gal3st4 nonsynonymous SNV NM_001033416:c.G370A:p.A124T exonic Gal3st4 nonsynonymous SNV uc009afh.1:c.G370A:p.A124T exonic ENSMUSG00000075593 nonsynonymous SNV ENSMUST00000100530:c.G370A:p.A124T 5qG2 NA NA chr5 138712055 CCGxACT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 100 0 0 49.87743 0.446809 0.02 -0.412071 26 21 724 539 60 60 0 0 CC 12.330091 41 0 1125 0 KEEP - Gal3st4 YES MNNG_3 chr5 139475366 139475366 C T intergenic "Pdgfa(dist=4459),Prkar1b(dist=17892)" NA NA intergenic "Pdgfa(dist=4459),Prkar1b(dist=17892)" NA NA UTR3 ENSMUSG00000075585 NA NA 5qG2 NA NA chr5 139475366 TCCxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.99986 40 0 0 21.098156 0.5 0.02 -0.140307 8 8 227 221 60 60 0 0 CC 5.71543 19 0 538 0 KEEP NA Pdgfa YES MNNG_3 chr5 139627564 139627564 C T exonic Heatr2 synonymous SNV NM_001081265:c.C717T:p.N239N exonic Heatr2 synonymous SNV uc009afz.1:c.C717T:p.N239N exonic ENSMUSG00000025857 synonymous SNV ENSMUST00000026975:c.C717T:p.N239N 5qG2 NA NA chr5 139627564 GAAxTCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 165 0 0 76.074006 0.526316 0.02 1.088804 27 30 761 789 60 60 0 0 CC 24.94603 83 0 2299 0 KEEP + Heatr2 YES MNNG_3 chr5 139742932 139742932 C T intronic Get4 NA NA intronic Get4 NA NA intronic ENSMUSG00000025858 NA NA 5qG2 NA NA chr5 139742932 TCAxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 90 0 0 52.456091 0.478261 0.02 -0.403277 24 22 658 558 60 60 0 0 CC 11.12347 37 0 990 0 KEEP + Get4 YES MNNG_3 chr5 144474428 144474428 C T exonic Usp42 nonsynonymous SNV NM_029749:c.G3944A:p.C1315Y exonic Usp42 nonsynonymous SNV uc012egi.1:c.G1397A:p.C466Y exonic ENSMUSG00000051306 nonsynonymous SNV ENSMUST00000053287:c.G3944A:p.C1315Y 5qG2 NA NA chr5 144474428 CGGxATC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 150 0 0 46.64153 0.368421 0.02 1.001004 36 21 977 529 60 60 0 0 CC 20.149086 67 0 1854 0 KEEP - Usp42 YES MNNG_3 chr5 146813105 146813105 T G intronic Cyp3a25 NA NA intronic Cyp3a25 NA NA intronic ENSMUSG00000029630 NA NA 5qG3 "Score=0.948135;Name=No.91048,chr5:146880716" NA chr5 146813105 TGGxTAT T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 333 1 0 119.621727 0.392 0.02 2.294507 76 49 2025 1326 60 60 0 0 TT 46.914086 156 0 4271 0 KEEP - Cyp3a25 NO MNNG_3 chr5 21501280 21501280 C T exonic Reln unknown UNKNOWN exonic Reln nonsynonymous SNV uc008wpk.1:c.G829A:p.G277R exonic ENSMUSG00000042453 nonsynonymous SNV ENSMUST00000062372:c.G4039A:p.G1347R 5qA3 NA NA chr5 21501280 ATCxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 93 0 0 52.692544 0.555556 0.02 -0.315669 16 20 457 539 60 60 0 0 CC 12.912848 43 0 1189 0 KEEP - Reln YES MNNG_3 chr5 21677081 21677081 C T exonic Reln unknown UNKNOWN exonic Reln nonsynonymous SNV uc008wpi.1:c.G494A:p.R165K exonic ENSMUSG00000042453 nonsynonymous SNV ENSMUST00000062372:c.G494A:p.R165K 5qA3 NA NA chr5 21677081 CCCxTAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 70 0 0 39.011045 0.636364 0.02 -0.192921 8 14 230 386 60 60 0 0 CC 12.033203 40 0 1147 0 KEEP - Reln YES MNNG_3 chr5 23054316 23054316 C T exonic Srpk2 nonsynonymous SNV NM_009274:c.G256A:p.G86R exonic Srpk2 nonsynonymous SNV uc008wqe.1:c.G256A:p.G86R exonic ENSMUSG00000062604 nonsynonymous SNV ENSMUST00000088392:c.G256A:p.G86R 5qA3 NA NA chr5 23054316 ATCxTAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 305 2 0 114.791248 0.505747 0.02 0.834455 43 44 1221 1200 60 60 0 0 CC 48.432406 161 0 4598 0 KEEP - Srpk2 YES MNNG_3 chr5 23906595 23906595 C T exonic Abcb8 synonymous SNV NM_029020:c.C582T:p.Y194Y exonic Abcb8 synonymous SNV uc008wrg.1:c.C582T:p.Y194Y exonic ENSMUSG00000028973 synonymous SNV ENSMUST00000073076:c.C582T:p.Y194Y 5qA3 NA NA chr5 23906595 ATAxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 162 0 0 91.356747 0.457831 0.02 0.77232 45 38 1238 981 60 60 0 0 CC 18.047581 60 0 1677 0 KEEP + Abcb8 YES MNNG_3 chr5 23938644 23938644 C T exonic Slc4a2 nonsynonymous SNV NM_001253892:c.C1019T:p.A340V exonic Slc4a2 nonsynonymous SNV uc008wrm.2:c.C1019T:p.A340V exonic ENSMUSG00000028962 nonsynonymous SNV ENSMUST00000115047:c.C977T:p.A326V 5qA3 NA NA chr5 23938644 CAGxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 65 0 0 39.368976 0.666667 0.02 -0.210206 8 16 211 384 60 60 0 0 CC 8.421907 28 0 778 0 KEEP + Slc4a2 YES MNNG_3 chr5 26345113 26345113 C T exonic "Gm21671,Gm5862" nonsynonymous SNV NM_001281516:c.G652A:p.G218R intergenic "Actr3b(dist=988954),Speer4a(dist=15697)" NA NA exonic ENSMUSG00000067700 nonsynonymous SNV ENSMUST00000072286:c.G652A:p.G218R 5qB1 "Score=0.959747;Name=No.90488,chr5:26368162" NA chr5 26345113 ATCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 700 15 161 30.190818 0.133333 0.02 2.116147 104 16 2890 430 54 54 0 0 CC 128.272841 427 0 11822 0 KEEP NA Gm21671 YES MNNG_3 chr5 29801357 29801357 T A exonic Mnx1 nonsynonymous SNV NM_019944:c.A791T:p.K264M exonic Mnx1 nonsynonymous SNV uc008wuk.2:c.A791T:p.K264M exonic ENSMUSG00000001566 nonsynonymous SNV ENSMUST00000001608:c.A791T:p.K264M 5qB1 NA NA chr5 29801357 TACxTGT T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 114 0 0 52.091563 0.44 0.02 -0.438357 28 22 771 565 70 70 0 0 TT 15.625261 52 0 1431 0 KEEP - Mnx1 NO MNNG_3 chr5 31086720 31086720 C T exonic Dpysl5 nonsynonymous SNV NM_023047:c.C827T:p.A276V exonic Dpysl5 nonsynonymous SNV uc008wvy.1:c.C395T:p.A132V exonic ENSMUSG00000029168 nonsynonymous SNV ENSMUST00000088081:c.C827T:p.A276V 5qB1 NA NA chr5 31086720 ACGxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 65 0 0 34.542236 0.5 0.02 -0.245477 14 14 391 363 60 60 0 0 CC 9.925629 33 0 912 0 KEEP + Dpysl5 YES MNNG_3 chr5 33730523 33730523 C T exonic Uvssa nonsynonymous SNV NM_001081101:c.C317T:p.A106V exonic 4933407H18Rik nonsynonymous SNV uc008xar.1:c.C317T:p.A106V exonic ENSMUSG00000037355 nonsynonymous SNV ENSMUST00000087864:c.C317T:p.A106V 5qB1 NA NA chr5 33730523 CAGxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.352705 0.353947 0.99649 41 2 0 26.096291 0.555556 0.02 -0.166595 8 10 226 267 60 60 0 0 CC 4.51188 15 0 420 0 KEEP + Uvssa YES MNNG_3 chr5 34520359 34520359 C T exonic Mxd4 synonymous SNV NM_010753:c.G360A:p.Q120Q exonic Mxd4 synonymous SNV uc008xbz.1:c.G330A:p.Q110Q exonic ENSMUSG00000037235 synonymous SNV ENSMUST00000119171:c.G330A:p.Q110Q 5qB2 NA NA chr5 34520359 CCGxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490485 0.490544 0.999879 50 0 0 33.456883 0.565217 0.02 -0.201659 10 13 281 341 60 60 0 0 CC 6.61795 22 0 625 0 KEEP - Mxd4 YES MNNG_3 chr5 39064933 39064933 T C exonic Zfp518b nonsynonymous SNV NM_001177902:c.A967G:p.K323E exonic Zfp518b nonsynonymous SNV uc012dvr.1:c.A967G:p.K323E exonic ENSMUSG00000046572 nonsynonymous SNV ENSMUST00000057258:c.A952G:p.K318E 5qB3 NA NA chr5 39064933 CCTxTGA T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 180 0 0 20.780877 0.138889 0.02 1.046378 62 10 1677 286 60 60 0 0 TT 27.070243 90 0 2497 0 KEEP - Zfp518b NO MNNG_3 chr5 48626581 48626581 C T exonic Slit2 synonymous SNV NM_178804:c.C1813T:p.L605L exonic Slit2 synonymous SNV uc008xjo.2:c.C1813T:p.L605L exonic ENSMUSG00000031558 synonymous SNV ENSMUST00000033967:c.C1813T:p.L605L 5qB3 NA NA chr5 48626581 ATGxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 197 0 0 72.309338 0.405405 0.02 0.948537 44 30 1217 797 60 60 0 1 CC 27.973941 93 0 2609 0 KEEP + Slit2 YES MNNG_3 chr5 5036572 5036572 A C intronic Cdk14 NA NA intronic Cdk14 NA NA intronic ENSMUSG00000028926 NA NA 5qA1 NA NA chr5 5036572 AGAxGTT A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 44 2 0 11.955766 0.3 0.02 -0.175321 14 6 384 144 60 60 0 0 AA 5.112709 17 0 471 0 KEEP - Cdk14 NO MNNG_3 chr5 50390478 50390478 C T exonic Gpr125 nonsynonymous SNV NM_133911:c.G1148A:p.R383K exonic Gpr125 nonsynonymous SNV uc008xjz.2:c.G1148A:p.R383K exonic ENSMUSG00000029090 nonsynonymous SNV ENSMUST00000030971:c.G1148A:p.R383K 5qB3 NA NA chr5 50390478 TTCxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 73 0 0 19.755102 0.380952 0.02 -0.184157 13 8 372 220 60 60 0 0 CC 13.534799 45 0 1266 0 KEEP - Gpr125 YES MNNG_3 chr5 53514405 53514405 C T splicing Sel1l3(NM_172710:exon20:c.2860+1G>A) NA NA splicing Sel1l3(uc008xlc.1:exon20:c.2860+1G>A) NA NA splicing ENSMUSG00000029189(ENSMUST00000031090:exon20:c.2860+1G>A) NA NA 5qC1 NA NA chr5 53514405 ATAxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 73 0 0 26.819046 0.5 0.02 -0.192874 11 11 304 282 60 60 0 0 CC 11.42596 38 0 1018 0 KEEP - Sel1l3 YES MNNG_3 chr5 58520391 58520391 C T exonic Pcdh7 nonsynonymous SNV NM_001122758:c.C3569T:p.A1190V exonic Pcdh7 nonsynonymous SNV uc008xlu.2:c.C3545T:p.A1182V exonic ENSMUSG00000029108 nonsynonymous SNV ENSMUST00000094783:c.C3569T:p.A1190V 5qC1 NA NA chr5 58520391 TGGxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353943 0.353947 0.999988 49 0 0 28.325639 0.578947 0.02 -0.166571 8 11 218 287 60 60 0 0 CC 7.814487 26 0 706 0 KEEP + Pcdh7 YES MNNG_3 chr5 64329189 64329189 C T exonic Rell1 nonsynonymous SNV NM_145923:c.G172A:p.E58K exonic Rell1 nonsynonymous SNV uc008xmh.1:c.G172A:p.E58K exonic ENSMUSG00000047881 nonsynonymous SNV ENSMUST00000154169:c.G172A:p.E58K 5qC3.1 NA NA chr5 64329189 ATTxCGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 123 2 0 79.417382 0.545455 0.02 1.116423 25 30 686 815 60 60 0 0 CC 17.437404 58 0 1621 0 KEEP - Rell1 YES MNNG_3 chr5 73365792 73365792 C T exonic Slain2 synonymous SNV NM_001113423:c.C1386T:p.R462R exonic Slain2 synonymous SNV uc008xsi.1:c.C981T:p.R327R exonic "ENSMUSG00000036087,ENSMUSG00000063656" synonymous SNV ENSMUST00000043711:c.G150A:p.E50E 5qC3.2 NA NA chr5 73365792 CCGxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 121 2 0 44.165338 0.395833 0.02 -0.420828 29 19 796 491 60 60 0 0 CC 16.242793 54 0 1511 0 KEEP + Slain2 YES MNNG_3 chr5 73398587 73398587 C T exonic Slc10a4 synonymous SNV NM_173403:c.C282T:p.P94P exonic Slc10a4 synonymous SNV uc008xsk.1:c.C282T:p.P94P exonic ENSMUSG00000029219 synonymous SNV ENSMUST00000031127:c.C282T:p.P94P 5qC3.2 "Score=0.964305;Name=No.90569,chr5:72963365" NA chr5 73398587 GCCxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 88 0 0 40.289262 0.444444 0.02 -0.333209 20 16 561 434 60 60 0 0 CC 12.631353 42 0 1158 0 KEEP + Slc10a4 YES MNNG_3 chr5 91320401 91320401 C T exonic Cxcl1 nonsynonymous SNV NM_008176:c.C65T:p.A22V exonic Cxcl1 nonsynonymous SNV uc008ybl.2:c.C65T:p.A22V exonic ENSMUSG00000029380 nonsynonymous SNV ENSMUST00000031327:c.C65T:p.A22V 5qE1 NA NA chr5 91320401 TGGxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 140 2 0 62.823969 0.42623 0.02 1.045013 35 26 960 685 60 60 0 0 CC 19.846722 66 0 1807 0 KEEP + Cxcl1 YES MNNG_3 chr6 108610925 108610925 G A exonic Bhlhe40 nonsynonymous SNV NM_011498:c.G19A:p.A7T exonic Bhlhe40 nonsynonymous SNV uc009ddn.1:c.G19A:p.A7T exonic ENSMUSG00000030103 nonsynonymous SNV ENSMUST00000032194:c.G19A:p.A7T 6qE2 NA NA chr6 108610925 AGCxCGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 66 0 0 15.80802 0.368421 0.02 -0.166564 12 7 325 179 60 60 0 0 GG 11.110751 37 0 902 0 KEEP + Bhlhe40 YES MNNG_3 chr6 113016758 113016758 C T exonic Thumpd3 nonsynonymous SNV NM_008188:c.C1139T:p.T380I exonic Thumpd3 nonsynonymous SNV uc009del.1:c.C1139T:p.T380I exonic ENSMUSG00000030264 nonsynonymous SNV ENSMUST00000032398:c.C1139T:p.T380I 6qE3 NA NA chr6 113016758 CAAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 80 0 0 59.028317 0.638889 0.02 -0.315565 13 23 353 583 60 60 0 0 CC 10.225862 34 0 931 0 KEEP + Thumpd3 YES MNNG_3 chr6 113579371 113579371 C T intronic Vhl NA NA intronic Vhl NA NA intronic ENSMUSG00000033933 NA NA 6qE3 NA NA chr6 113579371 TACxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 112 0 0 86.05948 0.62 0.02 1.150135 19 31 530 857 60 60 0 0 CC 15.940486 53 0 1461 0 KEEP + Vhl YES MNNG_3 chr6 115199912 115199912 G A exonic Timp4 nonsynonymous SNV NM_080639:c.C287T:p.P96L exonic Timp4 nonsynonymous SNV uc009dip.1:c.C287T:p.P96L exonic ENSMUSG00000030317 nonsynonymous SNV ENSMUST00000032462:c.C287T:p.P96L 6qE3 NA NA chr6 115199912 AATxGCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 146 1 0 71.595142 0.491228 0.02 1.097573 29 28 811 754 60 60 0 0 GG 18.65067 62 0 1765 0 KEEP - Timp4 YES MNNG_3 chr6 115844290 115844290 C T exonic Ift122 synonymous SNV NM_001167763:c.C1527T:p.L509L exonic Ift122 synonymous SNV uc009djg.2:c.C1527T:p.L509L exonic ENSMUSG00000030323 synonymous SNV ENSMUST00000038234:c.C1527T:p.L509L 6qE3 NA NA chr6 115844290 GCTxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668429 0.668523 0.99986 53 0 0 23.857008 0.344828 0.02 -0.254305 19 10 541 272 60 60 0 0 CC 5.715788 19 0 545 0 KEEP + Ift122 YES MNNG_3 chr6 115944050 115944050 G A exonic Plxnd1 synonymous SNV NM_026376:c.C774T:p.D258D exonic Plxnd1 synonymous SNV uc009djn.1:c.C774T:p.D258D exonic ENSMUSG00000030123 synonymous SNV ENSMUST00000015511:c.C774T:p.D258D 6qE3 NA NA chr6 115944050 AAGxTCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 203 1 0 81.784868 0.393258 0.02 0.817036 54 35 1487 910 60 60 0 0 GG 25.258579 84 0 2322 0 KEEP - Plxnd1 YES MNNG_3 chr6 115993164 115993164 C T exonic Tmcc1 synonymous SNV NM_177412:c.G1224A:p.Q408Q exonic Tmcc1 synonymous SNV uc009djo.2:c.G264A:p.Q88Q exonic ENSMUSG00000030126 synonymous SNV ENSMUST00000088896:c.G1224A:p.Q408Q 6qE3 NA NA chr6 115993164 TGAxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 491 1 0 173.510727 0.41954 0.02 3.346879 101 73 2785 1901 60 60 0 0 CC 71.888469 239 0 6684 0 KEEP - Tmcc1 YES MNNG_3 chr6 116363221 116363221 C T exonic Alox5 synonymous SNV NM_009662:c.G1593A:p.K531K exonic Alox5 synonymous SNV uc009dkd.1:c.G1593A:p.K531K exonic ENSMUSG00000025701 synonymous SNV ENSMUST00000026795:c.G1593A:p.K531K 6qE3 NA NA chr6 116363221 GCTxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 109 0 0 44.68699 0.418605 0.02 -0.377062 25 18 717 488 60 60 0 0 CC 15.64232 52 0 1488 0 KEEP - Alox5 YES MNNG_3 chr6 116502076 116502076 G A intergenic "Olfr213(dist=10620),Olfr214(dist=4369)" NA NA intergenic "Olfr213(dist=10620),Olfr214(dist=4369)" NA NA ncRNA_exonic ENSMUSG00000060393 NA NA 6qE3 "Score=0.964806;Name=No.93953,chr6:78164294" NA chr6 116502076 AGAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 402 1 79 25.569493 0.105263 0.02 2.028815 119 14 3317 383 60 60 0 0 GG 60.452546 201 0 5704 0 KEEP NA Olfr213 YES MNNG_3 chr6 118105382 118105382 C T exonic Ret synonymous SNV NM_001080780:c.G3114A:p.E1038E exonic Ret synonymous SNV uc009dlm.1:c.G3114A:p.E1038E exonic ENSMUSG00000030110 synonymous SNV ENSMUST00000032201:c.G3114A:p.E1038E 6qF1 NA NA chr6 118105382 TGTxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 84 0 0 38.450696 0.535714 0.02 -0.245504 13 15 370 397 60 60 0 0 CC 13.534393 45 0 1252 0 KEEP - Ret YES MNNG_3 chr6 118498985 118498985 G A intronic Ankrd26 NA NA intronic Ankrd26 NA NA intronic ENSMUSG00000007827 NA NA 6qF1 NA NA chr6 118498985 CGGxGAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 120 1 0 35.13035 0.388889 0.02 1.12386 22 14 614 389 60 60 0 0 GG 17.443535 58 0 1596 0 KEEP - Ankrd26 YES MNNG_3 chr6 118544033 118544033 G A exonic Cacna1c synonymous SNV NM_001159533:c.C6297T:p.N2099N exonic Cacna1c synonymous SNV uc012erg.1:c.C3894T:p.N1298N exonic ENSMUSG00000051331 synonymous SNV ENSMUST00000112825:c.C5487T:p.N1829N 6qF1 NA NA chr6 118544033 GCAxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 173 2 0 89.497191 0.514286 0.02 0.974861 34 36 945 934 60 60 0 0 GG 23.460816 78 0 2173 0 KEEP - Cacna1c YES MNNG_3 chr6 118548789 118548789 G A intronic Cacna1c NA NA intronic Cacna1c NA NA intronic ENSMUSG00000051331 NA NA 6qF1 NA NA chr6 118548789 CTGxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582905 0.58293 0.999957 52 0 0 30.729121 0.461538 0.02 -0.227984 14 12 394 328 60 60 0 0 GG 7.821208 26 0 737 0 KEEP - Cacna1c YES MNNG_3 chr6 119295416 119295416 C T intronic Cacna2d4 NA NA intronic Cacna2d4 NA NA intronic ENSMUSG00000041460 NA NA 6qF1 NA NA chr6 119295416 TGTxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 117 0 0 51.223345 0.444444 0.02 -0.394325 25 20 670 551 60 60 0 0 CC 16.539112 55 0 1548 0 KEEP + Cacna2d4 YES MNNG_3 chr6 120432198 120432198 C T exonic Il17ra nonsynonymous SNV NM_008359:c.C2291T:p.P764L exonic Il17ra nonsynonymous SNV uc012erz.1:c.C1259T:p.P420L exonic ENSMUSG00000002897 nonsynonymous SNV ENSMUST00000002976:c.C2291T:p.P764L 6qF1 NA NA chr6 120432198 AGCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 69 0 0 31.442181 0.419355 0.02 -0.271814 18 13 504 344 60 60 0 0 CC 10.225999 34 0 938 0 KEEP + Il17ra YES MNNG_3 chr6 120901318 120901318 C T splicing Mical3(NM_001270475:exon30:c.5623+1G>A) NA NA splicing Mical3(uc009dnw.1:exon11:c.3010+1G>A) NA NA splicing "ENSMUSG00000051586(ENSMUST00000098457:exon14:c.3010+1G>A,ENSMUST00000038002:exon10:c.2872+1G>A,ENSMUST00000151602:exon6:c.746+1G>A)" NA NA 6qF1 NA NA chr6 120901318 GTAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 192 1 0 87.528385 0.473684 0.02 0.922292 40 36 1084 932 60 60 0 0 CC 25.857759 86 0 2308 0 KEEP - Mical3 YES MNNG_3 chr6 120932550 120932550 C T exonic Mical3 nonsynonymous SNV NM_001270475:c.G2801A:p.S934N exonic Mical3 nonsynonymous SNV uc009dnw.1:c.G188A:p.S63N exonic ENSMUSG00000051586 nonsynonymous SNV ENSMUST00000038002:c.G188A:p.S63N 6qF1 NA NA chr6 120932550 GACxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 194 2 0 94.987504 0.583333 0.02 1.071219 25 35 704 960 60 60 0 0 CC 31.558067 105 0 2914 0 KEEP - Mical3 YES MNNG_3 chr6 120983826 120983826 G A exonic Mical3 synonymous SNV NM_001270475:c.C1212T:p.F404F exonic Mical3 synonymous SNV uc009dnz.2:c.C1212T:p.F404F exonic ENSMUSG00000003178 synonymous SNV ENSMUST00000077159:c.C1212T:p.F404F 6qF1 NA NA chr6 120983826 CCAxAAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851864 0.851984 0.999859 57 0 0 23.726788 0.294118 0.02 -0.333234 24 10 679 279 60 60 0 0 GG 5.41496 18 0 516 0 KEEP - Mical3 YES MNNG_3 chr6 122028794 122028794 G A exonic Mug2 synonymous SNV NM_008646:c.G3417A:p.K1139K exonic Mug2 synonymous SNV uc009dos.1:c.G3417A:p.K1139K exonic ENSMUSG00000030131 synonymous SNV ENSMUST00000081777:c.G3417A:p.K1139K 6qF1 "Score=0.920219;Name=No.94041,chr6:122171264" NA chr6 122028794 TAAxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 146 1 2 87.020634 0.581818 0.02 1.212938 23 32 647 880 60 60 0 0 GG 21.650532 72 0 2051 0 KEEP + Mug2 YES MNNG_3 chr6 124257346 124257346 C T intronic Cd163 NA NA intronic Cd163 NA NA intronic ENSMUSG00000008845 NA NA 6qF2 NA NA chr6 124257346 AGGxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522114 0.522161 0.999909 51 1 0 28.056631 0.458333 0.02 -0.210458 13 11 371 300 60 60 0 0 CC 7.219416 24 0 679 0 KEEP + Cd163 YES MNNG_3 chr6 124695010 124695010 G A exonic Atn1 nonsynonymous SNV NM_007881:c.C2897T:p.P966L exonic Atn1 nonsynonymous SNV uc009drq.1:c.C2897T:p.P966L exonic ENSMUSG00000004263 nonsynonymous SNV ENSMUST00000088357:c.C2897T:p.P966L 6qF2 NA NA chr6 124695010 CCGxGCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 125 0 0 80.932321 0.516667 0.02 1.071253 29 31 804 842 60 60 0 0 GG 16.517315 55 0 1475 0 KEEP - Atn1 YES MNNG_3 chr6 124713931 124713931 C T exonic Eno2 nonsynonymous SNV NM_013509:c.G679A:p.V227M exonic Eno2 nonsynonymous SNV uc009drt.1:c.G322A:p.V108M exonic ENSMUSG00000004267 nonsynonymous SNV ENSMUST00000135626:c.G322A:p.V108M 6qF2 NA NA chr6 124713931 TCAxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 58 0 0 19.398756 0.421053 0.02 -0.166585 11 8 300 212 60 60 0 0 CC 8.422151 28 0 783 0 KEEP - Eno2 YES MNNG_3 chr6 124784761 124784761 C T exonic Gnb3 synonymous SNV NM_013530:c.G957A:p.G319G exonic Gnb3 synonymous SNV uc009dse.1:c.G825A:p.G275G exonic ENSMUSG00000023439 synonymous SNV ENSMUST00000024206:c.G957A:p.G319G 6qF2 NA NA chr6 124784761 GACxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 103 0 0 37.594492 0.454545 0.02 -0.297688 18 15 480 403 60 60 0 0 CC 16.542739 55 0 1530 0 KEEP - Gnb3 YES MNNG_3 chr6 125070541 125070541 G A exonic Chd4 nonsynonymous SNV NM_145979:c.G4093A:p.E1365K exonic Chd4 nonsynonymous SNV uc009dtm.1:c.G4114A:p.E1372K exonic ENSMUSG00000063870 nonsynonymous SNV ENSMUST00000124317:c.G754A:p.E252K 6qF2 NA NA chr6 125070541 GAGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 143 0 0 60.037528 0.382353 0.02 1.001365 42 26 1177 673 60 60 0 0 GG 16.241774 54 0 1514 0 KEEP + Chd4 YES MNNG_3 chr6 125300055 125300055 C T exonic Tnfrsf1a nonsynonymous SNV NM_011609:c.C14T:p.T5I exonic Tnfrsf1a nonsynonymous SNV uc009dul.2:c.C14T:p.T5I exonic ENSMUSG00000030341 nonsynonymous SNV ENSMUST00000032491:c.C14T:p.T5I 6qF3 NA NA chr6 125300055 CCAxCGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 225 0 0 155.269108 0.594059 0.02 2.114615 41 60 1115 1563 60 60 0 0 CC 30.030868 100 0 2736 0 KEEP + Tnfrsf1a YES MNNG_3 chr6 125313262 125313262 C T exonic Plekhg6 nonsynonymous SNV NM_198604:c.G2152A:p.G718R exonic Plekhg6 nonsynonymous SNV uc009dum.1:c.G2152A:p.G718R exonic ENSMUSG00000038167 nonsynonymous SNV ENSMUST00000042647:c.G2152A:p.G718R 6qF3 NA NA chr6 125313262 GCCxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 87 0 0 83.005052 0.725 0.02 -0.350745 11 29 309 794 60 60 0 0 CC 11.729711 39 0 1076 0 KEEP - Plekhg6 YES MNNG_3 chr6 126689689 126689689 A C exonic Kcna6 nonsynonymous SNV NM_013568:c.T254G:p.F85C exonic Kcna6 nonsynonymous SNV uc009dvd.2:c.T254G:p.F85C exonic ENSMUSG00000038077 nonsynonymous SNV ENSMUST00000040751:c.T254G:p.F85C 6qF3 NA NA chr6 126689689 AAGxAGT A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 181 0 0 115.758345 0.544304 0.02 0.993789 36 43 960 1189 60 60 0 0 AA 26.467837 88 0 2434 0 KEEP - Kcna6 NO MNNG_3 chr6 126689999 126689999 G A UTR5 Kcna6 NA NA UTR5 Kcna6 NA NA ncRNA_exonic ENSMUSG00000090432 NA NA 6qF3 NA NA chr6 126689999 CCAxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 47 1 0 17.836671 0.466667 0.02 -0.184149 8 7 229 190 60 60 0 0 GG 6.919034 23 0 658 0 KEEP - Kcna6 YES MNNG_3 chr6 128473876 128473876 C T intronic Pzp NA NA intronic Pzp NA NA intronic ENSMUSG00000030359 NA NA 6qF3 NA NA chr6 128473876 CCTxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 91 0 0 52.921786 0.606061 0.02 -0.298076 13 20 361 530 60 60 0 0 CC 12.964222 51 1 1415 22 KEEP - Pzp YES MNNG_3 chr6 128846557 128846557 C T exonic Clec2i nonsynonymous SNV NM_020257:c.C643T:p.P215S exonic Clec2i nonsynonymous SNV uc012eth.1:c.C460T:p.P154S exonic ENSMUSG00000030365 nonsynonymous SNV ENSMUST00000032519:c.C643T:p.P215S 6qF3 "Score=0.914272;Name=No.94082,chr6:128920748" NA chr6 128846557 ACTxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 304 0 0 133.203173 0.453782 0.02 2.151851 65 54 1824 1431 60 60 0 0 CC 39.7037 132 0 3730 0 KEEP + Clec2i YES MNNG_3 chr6 130102531 130102531 T C ncRNA_exonic Klra14-ps NA NA exonic Klra14 nonsynonymous SNV uc012etu.1:c.A583G:p.S195G ncRNA_exonic ENSMUSG00000072721 NA NA 6qF3 "Score=0.927638;Name=No.94097,chr6:130012765" NA chr6 130102531 AACxCTC T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 195 36 3 24.613991 0.22 0.02 0.983756 39 11 1036 308 60 60 0 0 TT 28.550905 95 0 2632 0 KEEP - Klra14-ps NO MNNG_3 chr6 130181555 130181555 C T exonic Klra7 synonymous SNV NM_014194:c.G81A:p.E27E exonic Klra7 synonymous SNV uc009ehx.2:c.G81A:p.E27E exonic ENSMUSG00000067599 synonymous SNV ENSMUST00000049304:c.G81A:p.E27E 6qF3 NA NA chr6 130181555 AGGxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 568 2 0 140.436097 0.471074 0.02 4.512106 64 57 1781 1496 60 60 0 0 CC 82.099977 273 0 7566 0 KEEP - Klra7 YES MNNG_3 chr6 13124547 13124547 C T intergenic "Tmem106b(dist=85278),Vwde(dist=11063)" NA NA intergenic "Tmem106b(dist=85278),Vwde(dist=11063)" NA NA intergenic "ENSMUSG00000077643(dist=63120),ENSMUSG00000079679(dist=11066)" NA NA 6qA1 NA NA chr6 13124547 ACAxATT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.489481 0.490544 0.997832 41 0 0 29.303375 0.521739 0.02 -0.201647 11 12 310 305 60 60 0 0 CC 4.813023 16 0 454 0 KEEP NA Tmem106b YES MNNG_3 chr6 13158340 13158340 C T exonic Vwde nonsynonymous SNV NM_001013757:c.G542A:p.G181D exonic Vwde nonsynonymous SNV uc009ayl.1:c.G542A:p.G181D exonic ENSMUSG00000079679 nonsynonymous SNV ENSMUST00000054530:c.G542A:p.G181D 6qA1 NA NA chr6 13158340 CCAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 255 0 0 94.737898 0.506667 0.02 0.939788 37 38 1019 992 60 60 0 0 CC 40.302638 134 0 3696 0 KEEP - Vwde YES MNNG_3 chr6 134567474 134567474 C T exonic Mansc1 synonymous SNV NM_026345:c.G222A:p.G74G exonic Mansc1 synonymous SNV uc009ekm.2:c.G222A:p.G74G exonic ENSMUSG00000032718 synonymous SNV ENSMUST00000047443:c.G222A:p.G74G 6qG1 NA NA chr6 134567474 GTCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 110 2 0 48.523941 0.487179 0.02 -0.341935 20 19 550 512 60 60 0 0 CC 16.1799 54 0 1491 0 KEEP - Mansc1 YES MNNG_3 chr6 13553215 13553215 C T exonic Tmem168 nonsynonymous SNV NM_028990:c.G151A:p.G51S exonic Tmem168 nonsynonymous SNV uc009ayn.1:c.G151A:p.G51S exonic ENSMUSG00000029569 nonsynonymous SNV ENSMUST00000031554:c.G151A:p.G51S 6qA1 NA NA chr6 13553215 GGCxTAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139181 0.139832 0.995343 28 0 0 23.214006 0.727273 0.02 -0.10523 3 8 88 222 60 60 0 0 CC 4.210333 14 0 387 0 KEEP - Tmem168 YES MNNG_3 chr6 135730327 135730327 G A exonic Grin2b stopgain SNV NM_008171:c.C1153T:p.Q385X exonic Grin2b stopgain SNV uc009elq.1:c.C1153T:p.Q385X exonic ENSMUSG00000030209 stopgain SNV ENSMUST00000053880:c.C1153T:p.Q385X 6qG1 NA NA chr6 135730327 TCTxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 91 0 0 41.77358 0.515152 0.02 -0.298077 16 17 442 436 60 60 0 0 GG 12.922571 43 0 1164 0 KEEP - Grin2b YES MNNG_3 chr6 141414653 141414653 C T exonic Pde3a synonymous SNV NM_018779:c.C1431T:p.D477D exonic Pde3a synonymous SNV uc009eon.1:c.C1431T:p.D477D exonic ENSMUSG00000041741 synonymous SNV ENSMUST00000043259:c.C1431T:p.D477D 6qG2 NA NA chr6 141414653 TGAxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 92 0 0 55.185089 0.617647 0.02 -0.298086 13 21 354 550 60 60 0 0 CC 12.3897 45 1 1262 10 KEEP + Pde3a YES MNNG_3 chr6 141874184 141874184 G A exonic Slco1a1 nonsynonymous SNV NM_013797:c.C776T:p.T259I exonic Slco1a1 nonsynonymous SNV uc009eot.2:c.C776T:p.T259I exonic ENSMUSG00000041698 nonsynonymous SNV ENSMUST00000042119:c.C776T:p.T259I 6qG2 NA NA chr6 141874184 CTGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 178 0 1 61.093277 0.380282 0.02 0.877542 44 27 1202 687 60 60 0 0 GG 26.444455 88 0 2380 0 KEEP - Slco1a1 YES MNNG_3 chr6 142444195 142444195 C T exonic Ldhb nonsynonymous SNV NM_008492:c.G488A:p.G163E exonic Ldhb nonsynonymous SNV uc009epj.1:c.G488A:p.G163E exonic ENSMUSG00000030246 nonsynonymous SNV ENSMUST00000032373:c.G488A:p.G163E 6qG2 NA NA chr6 142444195 CATxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 39 0 0 38.141942 0.8125 0.02 -0.149064 3 13 85 353 60 60 0 0 CC 5.112207 17 0 470 0 KEEP - Ldhb YES MNNG_3 chr6 144157850 144157850 C T splicing "Sox5(NM_001243163:exon2:c.38+1G>A,NM_011444:exon2:c.38+1G>A,NM_001113559:exon2:c.38+1G>A)" NA NA splicing "Sox5(uc009eqk.2:exon2:c.38+1G>A,uc012evm.1:exon2:c.38+1G>A,uc009eql.2:exon2:c.38+1G>A,uc009eqm.2:exon2:c.38+1G>A,uc009eqp.2:exon2:c.38+1G>A)" NA NA splicing "ENSMUSG00000041540(ENSMUST00000111749:exon2:c.38+1G>A,ENSMUST00000077160:exon2:c.38+1G>A,ENSMUST00000038815:exon2:c.38+1G>A,ENSMUST00000170367:exon2:c.38+1G>A)" NA NA 6qG3 NA NA chr6 144157850 TCAxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 55 0 0 24.126242 0.642857 0.02 -0.122747 5 9 138 238 60 60 0 0 CC 8.703975 29 0 769 0 KEEP - Sox5 YES MNNG_3 chr6 144948863 144948863 C T intronic Bcat1 NA NA intronic Bcat1 NA NA intronic ENSMUSG00000030268 NA NA 6qG3 NA NA chr6 144948863 AAGxGAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 31 0 0 15.370573 0.545455 0.02 -0.105174 5 6 122 158 60 60 0 0 CC 4.485644 15 0 346 0 KEEP - Bcat1 YES MNNG_3 chr6 144948866 144948866 G A intronic Bcat1 NA NA intronic Bcat1 NA NA intronic ENSMUSG00000030268 NA NA 6qG3 NA NA chr6 144948866 CGAxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139048 0.139832 0.994391 27 0 0 15.267985 0.545455 0.02 -0.105211 5 6 139 157 60 60 0 0 GG 3.894529 13 0 341 0 KEEP - Bcat1 YES MNNG_3 chr6 146271786 146271786 G A intronic Itpr2 NA NA intronic Itpr2 NA NA intronic ENSMUSG00000030287 NA NA 6qG3 NA NA chr6 146271786 CAAxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 147 1 0 77.647135 0.525424 0.02 1.08008 28 31 770 806 60 60 0 0 GG 19.535873 65 0 1807 0 KEEP - Itpr2 YES MNNG_3 chr6 147205701 147205701 C T exonic Pthlh synonymous SNV NM_008970:c.G282A:p.R94R exonic Pthlh synonymous SNV uc009esx.2:c.G282A:p.R94R exonic ENSMUSG00000048776 synonymous SNV ENSMUST00000052296:c.G282A:p.R94R 6qG3 NA NA chr6 147205701 AAAxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 200 0 0 76.81672 0.382022 0.02 0.711386 55 34 1482 863 60 60 0 0 CC 26.419961 88 0 2396 0 KEEP - Pthlh YES MNNG_3 chr6 15361292 15361292 C T exonic Foxp2 synonymous SNV NM_212435:c.C1593T:p.S531S exonic Foxp2 synonymous SNV uc009aza.1:c.C1593T:p.S531S exonic ENSMUSG00000029563 synonymous SNV ENSMUST00000031545:c.C1593T:p.S531S 6qA1 NA NA chr6 15361292 CAGxTGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 74 0 0 26.79708 0.44 0.02 -0.219201 14 11 390 290 60 60 0 0 CC 10.227175 34 0 956 0 KEEP + Foxp2 YES MNNG_3 chr6 17054577 17054577 C T intronic Tes NA NA ncRNA_intronic EG232599 NA NA ncRNA_intronic ENSMUSG00000054556 NA NA 6qA2 NA NA chr6 17054577 CTGxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 53 0 0 22.92286 0.642857 0.02 -0.131486 5 9 138 226 60 60 0 0 CC 8.722025 29 0 801 0 KEEP + Tes YES MNNG_3 chr6 17973038 17973038 C T intronic Wnt2 NA NA intronic Wnt2 NA NA intronic ENSMUSG00000010797 NA NA 6qA2 NA NA chr6 17973038 CAGxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 38 0 0 16.314145 0.388889 0.02 -0.157818 11 7 302 182 60 60 0 0 CC 4.812171 16 0 439 0 KEEP - Wnt2 YES MNNG_3 chr6 28371115 28371115 C T exonic Gcc1 nonsynonymous SNV NM_028900:c.G202A:p.G68S exonic Gcc1 nonsynonymous SNV uc009bco.2:c.G202A:p.G68S exonic ENSMUSG00000029708 nonsynonymous SNV ENSMUST00000090511:c.G202A:p.G68S 6qA3.3 NA NA chr6 28371115 GGCxTAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 149 0 0 58.1022 0.410714 0.02 1.204158 33 23 926 636 60 60 0 0 CC 24.363996 81 0 2271 0 KEEP - Gcc1 YES MNNG_3 chr6 29391296 29391296 C T intronic Flnc NA NA intronic Flnc NA NA intronic ENSMUSG00000068699 NA NA 6qA3.3 NA NA chr6 29391296 AGCxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 80 0 0 22.826316 0.294118 0.02 -0.315683 24 10 685 270 60 60 0 0 CC 10.519926 35 0 976 0 KEEP + Flnc YES MNNG_3 chr6 29506989 29506989 C T exonic Tnpo3 synonymous SNV NM_177296:c.G2262A:p.R754R exonic Tnpo3 synonymous SNV uc009bdx.1:c.G201A:p.R67R exonic ENSMUSG00000012535 synonymous SNV ENSMUST00000012679:c.G2262A:p.R754R 6qA3.3 NA NA chr6 29506989 TAAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 142 1 0 61.036904 0.533333 0.02 -0.394536 21 24 572 631 60 60 0 0 CC 21.049378 70 0 1916 0 KEEP - Tnpo3 YES MNNG_3 chr6 34314199 34314199 G T intronic Akr1b8 NA NA intronic Akr1b8 NA NA intronic ENSMUSG00000029762 NA NA 6qB1 NA NA chr6 34314199 TGGxGGT G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162465 0.162467 0.999988 43 0 0 14.145667 0.5 0.02 -0.113968 6 6 170 149 60 60 0 0 GG 8.121625 27 0 758 0 KEEP + Akr1b8 NO MNNG_3 chr6 34856655 34856655 C T exonic Wdr91 nonsynonymous SNV NM_001013366:c.G580A:p.V194I exonic Wdr91 nonsynonymous SNV uc009bhz.1:c.G580A:p.V194I exonic ENSMUSG00000058486 nonsynonymous SNV ENSMUST00000081214:c.G580A:p.V194I 6qB1 NA NA chr6 34856655 GAAxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 108 2 0 27.471376 0.307692 0.02 -0.34196 27 12 745 322 60 60 0 0 CC 15.640634 52 0 1459 0 KEEP - Wdr91 YES MNNG_3 chr6 37282423 37282423 C T UTR3 Creb3l2 NA NA UTR3 Creb3l2 NA NA UTR3 ENSMUSG00000038648 NA NA 6qB1 NA NA chr6 37282423 TCTxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 89 7 0 31.004852 0.48 0.02 -0.219223 13 12 367 328 60 60 0 0 CC 16.846156 56 0 1598 0 KEEP - Creb3l2 YES MNNG_3 chr6 38653713 38653713 C T intronic Hipk2 NA NA intronic Hipk2 NA NA intronic ENSMUSG00000061436 NA NA 6qB1 NA NA chr6 38653713 GGAxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099714 0.099721 0.999931 39 0 0 16.337324 0.6 0.02 -0.087689 4 6 114 164 60 60 0 0 CC 7.520584 25 0 713 0 KEEP - Hipk2 YES MNNG_3 chr6 39297375 39297375 G A exonic Slc37a3 synonymous SNV NM_028123:c.C937T:p.L313L exonic Slc37a3 synonymous SNV uc009bll.2:c.C937T:p.L313L exonic ENSMUSG00000029924 synonymous SNV ENSMUST00000090243:c.C937T:p.L313L 6qB1 NA NA chr6 39297375 GCAxCCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 102 0 0 73.823031 0.666667 0.02 -0.368157 14 28 386 721 60 60 0 0 GG 13.519217 45 0 1225 0 KEEP - Slc37a3 YES MNNG_3 chr6 39524858 39524858 C T exonic Adck2 stopgain SNV NM_178873:c.C559T:p.Q187X exonic Adck2 stopgain SNV uc009bmb.1:c.C559T:p.Q187X exonic ENSMUSG00000046947 stopgain SNV ENSMUST00000051249:c.C559T:p.Q187X 6qB1 NA NA chr6 39524858 CTCxAGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 90 0 0 36.169384 0.428571 0.02 -0.306863 20 15 560 394 60 60 0 0 CC 12.633258 42 0 1184 0 KEEP + Adck2 YES MNNG_3 chr6 40415984 40415984 C T UTR3 Wee2 NA NA UTR3 Wee2 NA NA UTR3 ENSMUSG00000037159 NA NA 6qB1 NA NA chr6 40415984 TTGxTAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 148 0 0 50.761339 0.396226 0.02 1.132672 32 21 900 562 60 60 0 0 CC 21.057258 70 0 1996 0 KEEP + Wee2 YES MNNG_3 chr6 41901726 41901726 G A exonic Sval1 synonymous SNV NM_027832:c.G72A:p.E24E exonic Sval1 synonymous SNV uc009bqj.1:c.G72A:p.E24E exonic ENSMUSG00000029865 synonymous SNV ENSMUST00000031898:c.G72A:p.E24E 6qB2.1 NA NA chr6 41901726 GGAxATT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 117 0 0 48.15277 0.422222 0.02 -0.394604 26 19 730 524 60 60 0 0 GG 15.342691 51 0 1469 0 KEEP + Sval1 YES MNNG_3 chr6 42230112 42230112 G A exonic Casp2 nonsynonymous SNV NM_007610:c.G1147A:p.G383S exonic Casp2 nonsynonymous SNV uc009bqr.1:c.G208A:p.G70S exonic ENSMUSG00000029863 nonsynonymous SNV ENSMUST00000031895:c.G1147A:p.G383S 6qB2.1 NA NA chr6 42230112 CGGxGTT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 77 0 0 30.281933 0.413793 0.02 -0.254293 17 12 470 331 60 60 0 0 GG 9.926461 33 0 927 0 KEEP + Casp2 YES MNNG_3 chr6 42261275 42261275 G A intronic Clcn1 NA NA intronic Clcn1 NA NA intronic ENSMUSG00000029862 NA NA 6qB2.1 NA NA chr6 42261275 ATGxATT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229148 0.229173 0.999892 43 0 0 9.231331 0.266667 0.02 -0.131538 11 4 310 111 60 60 0 0 GG 6.91811 23 0 649 0 KEEP + Clcn1 YES MNNG_3 chr6 42410141 42410141 C T exonic Olfr458 synonymous SNV NM_146444:c.G876A:p.L292L exonic Olfr458 synonymous SNV uc009bri.1:c.G876A:p.L292L exonic ENSMUSG00000068574 synonymous SNV ENSMUST00000090156:c.G876A:p.L292L 6qB2.1 NA NA chr6 42410141 CCTxAGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 75 0 0 14.268842 0.352941 0.02 -0.149063 11 6 307 162 60 60 0 0 CC 12.920251 43 0 1220 0 KEEP - Olfr458 YES MNNG_3 chr6 42421540 42421540 G A exonic Olfr457 synonymous SNV NM_146987:c.C636T:p.S212S exonic Olfr457 synonymous SNV uc009brj.1:c.C636T:p.S212S exonic ENSMUSG00000091983 synonymous SNV ENSMUST00000170504:c.C636T:p.S212S 6qB2.1 NA NA chr6 42421540 CAGxGAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 159 0 0 85.406285 0.507463 0.02 1.00155 33 34 912 894 60 60 0 0 GG 22.857341 76 0 2102 0 KEEP - Olfr457 YES MNNG_3 chr6 43233286 43233286 C T exonic Arhgef5 synonymous SNV NM_133674:c.C4206T:p.H1402H exonic Arhgef5 synonymous SNV uc009bsn.1:c.C411T:p.H137H exonic ENSMUSG00000033542 synonymous SNV ENSMUST00000031750:c.C4206T:p.H1402H 6qB2.1 NA NA chr6 43233286 CCAxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73962 0.739671 0.999931 61 0 0 25.204141 0.34375 0.02 -0.280574 21 11 578 289 60 60 0 0 CC 7.474161 25 0 679 0 KEEP + Arhgef5 YES MNNG_3 chr6 43237567 43237567 C T exonic Arhgef5 synonymous SNV NM_133674:c.C4512T:p.A1504A exonic Arhgef5 synonymous SNV uc009bso.2:c.C4512T:p.A1504A exonic ENSMUSG00000033542 synonymous SNV ENSMUST00000031750:c.C4512T:p.A1504A 6qB2.1 NA NA chr6 43237567 TGCxTAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 69 0 0 25.756718 0.47619 0.02 -0.18415 11 10 314 273 60 60 0 0 CC 11.716746 39 0 1100 0 KEEP + Arhgef5 YES MNNG_3 chr6 4487213 4487213 C T exonic Col1a2 nonsynonymous SNV NM_007743:c.C3164T:p.P1055L exonic Col1a2 nonsynonymous SNV uc009avm.1:c.C3164T:p.P1055L exonic ENSMUSG00000029661 nonsynonymous SNV ENSMUST00000169615:c.C2861T:p.P954L 6qA1 NA NA chr6 4487213 GTCxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 80 0 0 37.505206 0.405405 0.02 -0.324457 22 15 622 412 60 60 0 0 CC 9.023718 30 0 837 0 KEEP + Col1a2 YES MNNG_3 chr6 48417723 48417723 T G exonic Sspo nonsynonymous SNV NM_173428:c.T6652G:p.F2218V exonic Sspo nonsynonymous SNV uc009bul.1:c.T688G:p.F230V exonic ENSMUSG00000029797 nonsynonymous SNV ENSMUST00000043676:c.T6229G:p.F2077V 6qB2.3 NA NA chr6 48417723 ATCxTCC T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 78 0 0 16.127709 0.205128 0.02 -0.34192 31 8 833 209 60 60 0 0 TT 10.825974 36 0 989 0 KEEP + Sspo NO MNNG_3 chr6 51414093 51414093 C T exonic Hnrnpa2b1 nonsynonymous SNV NM_182650:c.G839A:p.G280D exonic Hnrnpa2b1 nonsynonymous SNV uc009bxm.1:c.G719A:p.G240D exonic ENSMUSG00000004980 nonsynonymous SNV ENSMUST00000069949:c.G839A:p.G280D 6qB3 NA NA chr6 51414093 CCAxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 150 0 0 58.391225 0.510638 0.02 -0.41204 23 24 638 611 60 60 0 0 CC 20.45031 68 0 1877 0 KEEP - Hnrnpa2b1 YES MNNG_3 chr6 52182485 52182485 G A UTR3 Hoxa10 NA NA UTR3 Hoxa10 NA NA UTR3 ENSMUSG00000000938 NA NA 6qB3 NA NA chr6 52182485 AAAxACG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 71 0 0 48.424304 0.580645 0.02 -0.271837 13 18 373 490 60 60 0 0 GG 9.025004 30 0 862 0 KEEP - Hoxa10 YES MNNG_3 chr6 54898121 54898121 C T intronic Nod1 NA NA intronic Nod1 NA NA intronic ENSMUSG00000038058 NA NA 6qB3 NA NA chr6 54898121 CTAxAGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522098 0.522161 0.999879 58 2 0 28.401625 0.521739 0.02 -0.201623 11 12 306 296 60 60 0 0 CC 6.618388 22 0 634 0 KEEP - Nod1 YES MNNG_3 chr6 55431184 55431184 G A intronic Adcyap1r1 NA NA intronic Adcyap1r1 NA NA intronic ENSMUSG00000029778 NA NA 6qB3 NA NA chr6 55431184 AAAxGGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076902 0.077336 0.994391 25 0 0 16.87221 0.666667 0.02 -0.07892 3 6 85 165 60 60 0 0 GG 3.910608 13 0 369 0 KEEP + Adcyap1r1 YES MNNG_3 chr6 57850692 57850692 C T exonic Vmn1r22 nonsynonymous SNV NM_134178:c.G293A:p.G98D exonic Vmn1r22 nonsynonymous SNV uc009ccr.1:c.G293A:p.G98D exonic ENSMUSG00000059362 nonsynonymous SNV ENSMUST00000079870:c.G293A:p.G98D 6qB3 NA NA chr6 57850692 ACAxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 287 0 0 81.113914 0.428571 0.02 0.755212 48 36 1330 889 60 60 0 0 CC 47.521217 158 0 4349 0 KEEP - Vmn1r22 YES MNNG_3 chr6 57876771 57876771 C T exonic Vmn1r23 synonymous SNV NM_134179:c.G15A:p.K5K exonic Vmn1r23 synonymous SNV uc009ccs.1:c.G15A:p.K5K exonic ENSMUSG00000068465 synonymous SNV ENSMUST00000089899:c.G15A:p.K5K 6qB3 NA NA chr6 57876771 ATTxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612341 0.612407 0.999892 57 1 0 53.429212 0.703704 0.02 -0.236754 8 19 231 515 60 60 0 0 CC 6.914908 23 0 652 0 KEEP - Vmn1r23 YES MNNG_3 chr6 58793656 58793656 C T exonic Herc3 synonymous SNV NM_028705:c.C30T:p.G10G exonic Herc3 synonymous SNV uc009cde.1:c.C30T:p.G10G exonic ENSMUSG00000029804 synonymous SNV ENSMUST00000031823:c.C30T:p.G10G 6qB3 NA NA chr6 58793656 GGGxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 67 0 0 32.468127 0.619048 0.02 -0.183491 8 13 199 323 60 60 0 0 CC 9.303827 31 0 837 0 KEEP + Herc3 YES MNNG_3 chr6 58812998 58812998 C T exonic Herc3 synonymous SNV NM_028705:c.C1101T:p.I367I exonic Herc3 synonymous SNV uc009cde.1:c.C1101T:p.I367I exonic ENSMUSG00000029804 synonymous SNV ENSMUST00000031823:c.C1101T:p.I367I 6qB3 NA NA chr6 58812998 GATxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999998 97 0 0 63.739671 0.533333 0.02 -0.403376 21 24 596 658 60 60 0 0 CC 10.228596 34 0 983 0 KEEP + Herc3 YES MNNG_3 chr6 58853261 58853261 C T intronic Herc3 NA NA exonic Herc3 nonsynonymous SNV uc009cde.1:c.C2681T:p.A894V exonic ENSMUSG00000029804 nonsynonymous SNV ENSMUST00000031823:c.C2681T:p.A894V 6qB3 NA NA chr6 58853261 AAGxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.423337 0.423478 0.999667 56 0 0 33.532957 0.619048 0.02 -0.184102 8 13 219 334 60 60 0 0 CC 9.311736 31 0 837 0 KEEP + Herc3 YES MNNG_3 chr6 66487568 66487568 C T exonic Mad2l1 synonymous SNV NM_019499:c.C226T:p.L76L exonic Mad2l1 synonymous SNV uc009cen.1:c.C226T:p.L76L exonic ENSMUSG00000029910 synonymous SNV ENSMUST00000101343:c.C226T:p.L76L 6qC1 NA NA chr6 66487568 TGGxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 77 2 1 23.661051 0.4 0.02 -0.219205 15 10 421 262 60 60 0 0 CC 12.022731 40 0 1111 0 KEEP + Mad2l1 YES MNNG_3 chr6 66726968 66726968 C T exonic Vmn1r38 nonsynonymous SNV NM_134168:c.G157A:p.V53I exonic Vmn1r38 nonsynonymous SNV uc009ceu.1:c.G157A:p.V53I exonic ENSMUSG00000068425 nonsynonymous SNV ENSMUST00000089829:c.G157A:p.V53I 6qC1 NA NA chr6 66726968 TGAxCAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 130 0 0 52.10928 0.466667 0.02 -0.394554 24 21 662 556 60 60 0 0 CC 20.810127 73 1 2016 10 KEEP - Vmn1r38 YES MNNG_3 chr6 69537300 69537300 C T intergenic "Rprl1(dist=260132),Rpia(dist=1178414)" NA NA ncRNA_intronic abParts NA NA exonic ENSMUSG00000076557 nonsynonymous SNV ENSMUST00000103358:c.G275A:p.S92N 6qC1 "Score=0.936617;Name=No.93867,chr6:69174141" NA chr6 69537300 TAAxTAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 165 1 0 82.192444 0.55 0.02 1.071342 27 33 740 844 60 60 0 0 CC 27.368646 91 0 2497 0 KEEP NA Rprl1 YES MNNG_3 chr6 70210714 70210714 C T intergenic "Rprl1(dist=933546),Rpia(dist=505000)" NA NA ncRNA_intronic abParts NA NA intronic ENSMUSG00000076585 NA NA 6qC1 "Score=0.979917;Name=No.93930,chr6:70324084" NA chr6 70210714 AAAxAGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.638361 0.641347 0.995343 45 0 0 42.85049 0.607143 0.02 -0.245458 11 17 302 429 60 60 0 0 CC 4.211282 14 0 396 0 KEEP NA Rprl1 YES MNNG_3 chr6 70337245 70337245 C T intergenic "Rprl1(dist=1060077),Rpia(dist=378469)" NA NA ncRNA_intronic abParts NA NA upstream ENSMUSG00000076591 NA NA 6qC1 "Score=0.979917;Name=No.93930,chr6:70178374" NA chr6 70337245 CTGxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 111 0 15 33.404359 0.424242 0.02 -0.289324 19 14 531 365 60 60 0 0 CC 16.842547 56 0 1544 0 KEEP NA Rprl1 YES MNNG_3 chr6 78321785 78321785 C T intronic Reg3b NA NA intronic Reg3b NA NA intronic ENSMUSG00000071356 NA NA 6qC3 NA NA chr6 78321785 CTCxACC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999317 0.999317 1 275 3 0 120.029666 0.575 0.02 0.887183 34 46 950 1218 60 60 0 0 CC 41.204923 137 0 3830 0 KEEP + Reg3b YES MNNG_3 chr6 78331126 78331126 C T exonic Reg3a synonymous SNV NM_011259:c.C45T:p.L15L exonic Reg3a synonymous SNV uc009cjy.1:c.C45T:p.L15L exonic ENSMUSG00000079516 synonymous SNV ENSMUST00000101272:c.C45T:p.L15L 6qC3 NA NA chr6 78331126 GCTxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 151 0 0 57.750153 0.511628 0.02 -0.377064 21 22 594 602 60 60 0 0 CC 24.667618 82 0 2344 0 KEEP + Reg3a YES MNNG_3 chr6 82885891 82885891 C T exonic Sema4f nonsynonymous SNV NM_001113481:c.G373A:p.E125K exonic Sema4f nonsynonymous SNV uc009clo.2:c.G373A:p.E125K exonic ENSMUSG00000000627 nonsynonymous SNV ENSMUST00000000641:c.G373A:p.E125K 6qC3 NA NA chr6 82885891 CCTxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 70 0 0 38.551535 0.46875 0.02 -0.280496 17 15 455 410 60 60 0 0 CC 9.024901 30 0 860 0 KEEP - Sema4f YES MNNG_3 chr6 83016482 83016482 A G exonic Dqx1 nonsynonymous SNV NM_033606:c.A2053G:p.R685G exonic Dqx1 nonsynonymous SNV uc009cmd.1:c.A802G:p.R268G exonic ENSMUSG00000009145 nonsynonymous SNV ENSMUST00000077502:c.A2053G:p.R685G 6qC3 NA NA chr6 83016482 AGCxGAG A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 255 1 0 63.7914 0.363636 0.02 0.826192 56 32 1496 736 60 60 0 0 AA 39.085806 130 0 3554 0 KEEP + Dqx1 NO MNNG_3 chr6 83145969 83145969 G A exonic Dctn1 nonsynonymous SNV NM_001198867:c.G2953A:p.D985N exonic Dctn1 nonsynonymous SNV uc009cna.2:c.G2953A:p.D985N exonic ENSMUSG00000031865 nonsynonymous SNV ENSMUST00000113907:c.G2662A:p.D888N 6qC3 NA NA chr6 83145969 GCTxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053733 0.054137 0.99254 18 0 0 10.098425 0.5 0.02 -0.070144 4 4 112 106 60 60 0 0 GG 2.707351 9 0 256 0 KEEP + Dctn1 YES MNNG_3 chr6 83246538 83246538 G A intronic Slc4a5 NA NA intronic Slc4a5 NA NA intronic ENSMUSG00000068323 NA NA 6qC3 NA NA chr6 83246538 TTGxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 92 1 0 24.827348 0.305556 0.02 -0.315567 25 11 679 292 60 60 0 0 GG 12.632923 42 0 1169 0 KEEP + Slc4a5 YES MNNG_3 chr6 84143004 84143004 G A exonic Dysf nonsynonymous SNV NM_001077694:c.G5372A:p.S1791N exonic Dysf nonsynonymous SNV uc009cow.1:c.G1349A:p.S450N exonic ENSMUSG00000033788 nonsynonymous SNV ENSMUST00000113818:c.G5282A:p.S1761N 6qC3 NA NA chr6 84143004 ATAxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 72 0 0 30.004939 0.521739 0.02 -0.20165 11 12 303 312 60 60 0 0 GG 12.328909 41 0 1124 0 KEEP + Dysf YES MNNG_3 chr6 85628198 85628198 G A exonic Alms1 nonsynonymous SNV NM_145223:c.G8324A:p.S2775N exonic Alms1 nonsynonymous SNV uc009cpz.1:c.G8324A:p.S2775N exonic ENSMUSG00000063810 nonsynonymous SNV ENSMUST00000072018:c.G8324A:p.S2775N 6qC3 NA NA chr6 85628198 GGAxTAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 79 0 4 35.97428 0.454545 0.02 -0.289327 18 15 506 387 60 46 0 0 GG 12.027954 40 0 1077 0 KEEP + Alms1 YES MNNG_3 chr6 87027258 87027258 G A intronic Gfpt1 NA NA intronic Gfpt1 NA NA intronic ENSMUSG00000029992 NA NA 6qD1 NA NA chr6 87027258 ATGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139048 0.139832 0.994391 26 0 0 19.097569 0.583333 0.02 -0.105229 5 7 142 193 60 60 0 0 GG 3.910876 13 0 374 0 KEEP + Gfpt1 YES MNNG_3 chr6 87338863 87338863 C T UTR5 Gkn3 NA NA UTR5 Gkn3 NA NA UTR5 ENSMUSG00000030048 NA NA 6qD1 NA NA chr6 87338863 TTCxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 129 0 0 78.592851 0.576923 0.02 1.239558 22 30 603 797 60 60 0 0 CC 18.948352 63 0 1762 0 KEEP - Gkn3 YES MNNG_3 chr6 88150247 88150247 C T exonic Gata2 synonymous SNV NM_008090:c.C264T:p.H88H exonic Gata2 synonymous SNV uc009cvc.2:c.C264T:p.H88H exonic ENSMUSG00000015053 synonymous SNV ENSMUST00000015197:c.C264T:p.H88H 6qD1 NA NA chr6 88150247 ACAxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 154 3 0 71.516258 0.467742 0.02 1.044964 33 29 925 763 60 60 0 0 CC 21.054912 70 0 1968 0 KEEP + Gata2 YES MNNG_3 chr6 88150746 88150746 G A exonic Gata2 nonsynonymous SNV NM_008090:c.G763A:p.A255T exonic Gata2 nonsynonymous SNV uc009cvc.2:c.G763A:p.A255T exonic ENSMUSG00000015053 nonsynonymous SNV ENSMUST00000015197:c.G763A:p.A255T 6qD1 NA NA chr6 88150746 CCCxCCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 144 2 0 76.73803 0.492063 0.02 0.948133 32 31 727 809 60 60 0 0 GG 19.822728 66 0 1595 0 KEEP + Gata2 YES MNNG_3 chr6 88441565 88441565 G A exonic Ruvbl1 nonsynonymous SNV NM_019685:c.G1072A:p.V358M exonic Ruvbl1 nonsynonymous SNV uc009cvh.1:c.G1072A:p.V358M exonic ENSMUSG00000030079 nonsynonymous SNV ENSMUST00000032165:c.G1072A:p.V358M 6qD1 NA NA chr6 88441565 AGGxTGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 92 0 0 32.370502 0.411765 0.02 -0.29808 20 14 544 357 60 60 0 0 GG 13.169705 44 0 1168 0 KEEP + Ruvbl1 YES MNNG_3 chr6 88789451 88789451 G A exonic Abtb1 synonymous SNV NM_030251:c.C354T:p.V118V exonic Abtb1 synonymous SNV uc009cvs.2:c.C354T:p.V118V exonic ENSMUSG00000030083 synonymous SNV ENSMUST00000032169:c.C354T:p.V118V 6qD1 NA NA chr6 88789451 AAAxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999998 85 0 0 67.506674 0.595238 0.02 -0.368285 17 25 482 679 60 60 0 0 GG 10.228222 34 0 975 0 KEEP - Abtb1 YES MNNG_3 chr6 88860568 88860568 G A exonic Tpra1 nonsynonymous SNV NM_011906:c.G688A:p.G230S exonic Tpra1 nonsynonymous SNV uc009cvy.1:c.G688A:p.G230S exonic ENSMUSG00000002871 nonsynonymous SNV ENSMUST00000055022:c.G688A:p.G230S 6qD1 NA NA chr6 88860568 GCAxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 129 0 0 90.671779 0.548387 0.02 1.053672 28 34 796 930 60 60 0 0 GG 15.039659 50 0 1420 0 KEEP + Tpra1 YES MNNG_3 chr6 90417372 90417372 C T exonic Klf15 nonsynonymous SNV NM_023184:c.C934T:p.P312S exonic Klf15 nonsynonymous SNV uc009cxk.1:c.C934T:p.P312S exonic ENSMUSG00000030087 nonsynonymous SNV ENSMUST00000032174:c.C934T:p.P312S 6qD1 NA NA chr6 90417372 AACxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 148 0 0 90.652226 0.522388 0.02 1.009991 32 35 875 941 60 60 0 0 CC 21.355554 71 0 1975 0 KEEP + Klf15 YES MNNG_3 chr6 91937161 91937161 G A UTR5 Fgd5 NA NA exonic Fgd5 nonsynonymous SNV uc009cym.1:c.G380A:p.G127E exonic ENSMUSG00000034037 nonsynonymous SNV ENSMUST00000089334:c.G380A:p.G127E 6qD1 NA NA chr6 91937161 AGGxGGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612323 0.612407 0.999863 48 1 0 24.34084 0.37037 0.02 -0.236757 17 10 474 273 60 60 0 0 GG 6.015994 20 0 561 0 KEEP + Fgd5 YES MNNG_3 chr6 92003217 92003217 C T intronic Fgd5 NA NA intronic Fgd5 NA NA intronic ENSMUSG00000034037 NA NA 6qD1 NA NA chr6 92003217 CCTxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 63 0 0 16.80831 0.368421 0.02 -0.166609 12 7 339 189 60 60 0 0 CC 9.025048 30 0 862 0 KEEP + Fgd5 YES MNNG_3 chr6 95283916 95283916 G A ncRNA_exonic AY512915 NA NA ncRNA_exonic AY512915 NA NA ncRNA_exonic ENSMUSG00000068180 NA NA 6qD2 NA NA chr6 95283916 AAGxACG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 248 2 0 80.879118 0.470588 0.02 1.002103 36 32 985 860 60 60 0 0 GG 42.399922 141 0 3915 0 KEEP - AY512915 YES MNNG_3 chr6 97070777 97070777 G A exonic Eogt nonsynonymous SNV NM_175313:c.C853T:p.L285F exonic A130022J15Rik nonsynonymous SNV uc009dai.1:c.C853T:p.L285F exonic ENSMUSG00000035245 nonsynonymous SNV ENSMUST00000054344:c.C853T:p.L285F 6qD3 NA NA chr6 97070777 AGAxGTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 171 0 0 82.322871 0.508197 0.02 1.160311 30 31 844 859 60 60 0 0 GG 24.64494 82 0 2289 0 KEEP - Eogt YES MNNG_3 chr7 105748290 105748290 C T intronic 2210018M11Rik NA NA exonic 2210018M11Rik synonymous SNV uc009ikp.1:c.G2421A:p.E807E exonic ENSMUSG00000035401 synonymous SNV ENSMUST00000098271:c.G2421A:p.E807E 7qE2 NA NA chr7 105748290 CCCxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 129 2 0 51.17063 0.454545 0.02 -0.385842 24 20 685 548 60 60 0 0 CC 19.552787 65 0 1848 0 KEEP - 2210018M11Rik YES MNNG_3 chr7 108703405 108703405 C T exonic Art2a-ps unknown UNKNOWN ncRNA_exonic Art2a NA NA exonic ENSMUSG00000092517 unknown UNKNOWN 7qE3 NA NA chr7 108703405 TACxTCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 78 2 0 29.137419 0.387097 0.02 -0.271826 19 12 533 324 60 60 0 0 CC 11.130198 37 0 1052 0 KEEP - Art2a-ps YES MNNG_3 chr7 109301677 109301677 C T exonic Nup98 nonsynonymous SNV NM_022979:c.G2284A:p.V762I exonic Nup98 nonsynonymous SNV uc009iqx.1:c.G208A:p.V70I exonic ENSMUSG00000063550 nonsynonymous SNV ENSMUST00000168845:c.G1912A:p.V638I 7qE3 NA NA chr7 109301677 AAAxAAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 127 0 0 57.454505 0.454545 0.02 0.912409 30 25 828 620 60 60 0 0 CC 15.038631 50 0 1386 0 KEEP - Nup98 YES MNNG_3 chr7 109861991 109861991 C T exonic Olfr33 nonsynonymous SNV NM_147073:c.G935A:p.R312K exonic Olfr33 nonsynonymous SNV uc009isj.1:c.G935A:p.R312K exonic ENSMUSG00000066273 nonsynonymous SNV ENSMUST00000084817:c.G935A:p.R312K 7qE3 NA NA chr7 109861991 ACTxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 225 6 0 134.33829 0.477064 0.02 2.426002 57 52 1606 1423 60 60 0 0 CC 27.976684 93 0 2667 0 KEEP - Olfr33 YES MNNG_3 chr7 110746678 110746678 C T exonic Olfr618 nonsynonymous SNV NM_147047:c.C847T:p.L283F exonic Olfr618 nonsynonymous SNV uc009iuc.1:c.C847T:p.L283F exonic ENSMUSG00000073945 nonsynonymous SNV ENSMUST00000098197:c.C847T:p.L283F 7qE3 NA NA chr7 110746678 AACxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 89 0 0 36.168947 0.384615 0.02 -0.34197 24 15 674 403 60 60 0 0 CC 12.618137 42 0 1173 0 KEEP + Olfr618 YES MNNG_3 chr7 111151924 111151924 C T exonic Olfr638 nonsynonymous SNV NM_147120:c.C152T:p.T51I exonic Olfr638 nonsynonymous SNV uc009ivb.1:c.C152T:p.T51I exonic ENSMUSG00000073933 nonsynonymous SNV ENSMUST00000098184:c.C152T:p.T51I 7qE3 "Score=0.934426;Name=No.16007,chr11:108548228" NA chr7 111151924 ACAxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 252 3 0 90.859374 0.410526 0.02 0.667115 56 39 1545 1002 60 60 0 0 CC 40.833881 136 0 3701 0 KEEP + Olfr638 YES MNNG_3 chr7 111152714 111152714 C T exonic Olfr638 synonymous SNV NM_147120:c.C942T:p.L314L exonic Olfr638 synonymous SNV uc009ivb.1:c.C942T:p.L314L exonic ENSMUSG00000073933 synonymous SNV ENSMUST00000098184:c.C942T:p.L314L 7qE3 "Score=0.934426;Name=No.16007,chr11:108548228" NA chr7 111152714 CCTxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 248 1 0 148.565574 0.491525 0.02 2.151818 60 58 1655 1564 60 60 0 0 CC 34.590725 115 0 3225 0 KEEP + Olfr638 YES MNNG_3 chr7 111988968 111988968 C T exonic Usp17lb nonsynonymous SNV NM_201409:c.G1265A:p.G422E exonic Dub1a nonsynonymous SNV uc009iwy.1:c.G1265A:p.G422E exonic ENSMUSG00000062369 nonsynonymous SNV ENSMUST00000076501:c.G1265A:p.G422E 7qE3 NA NA chr7 111988968 TGCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 256 2 0 93.817668 0.383838 0.02 0.819108 61 38 1663 1043 60 60 0 0 CC 38.495788 128 0 3554 0 KEEP - Usp17lb YES MNNG_3 chr7 112910785 112910785 C T exonic Dchs1 nonsynonymous SNV NM_001162943:c.G4637A:p.R1546H exonic Dchs1 nonsynonymous SNV uc009izh.2:c.G4637A:p.R1546H exonic ENSMUSG00000036862 nonsynonymous SNV ENSMUST00000078482:c.G4637A:p.R1546H 7qE3 NA NA chr7 112910785 AGGxGCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 82 0 0 32.478868 0.394737 0.02 -0.332705 23 15 546 364 60 60 0 0 CC 10.218296 34 0 868 0 KEEP - Dchs1 YES MNNG_3 chr7 113821952 113821952 C T exonic Olfr693 nonsynonymous SNV NM_146453:c.G47A:p.G16E exonic Olfr693 nonsynonymous SNV uc009izw.2:c.G47A:p.G16E exonic ENSMUSG00000051680 nonsynonymous SNV ENSMUST00000057817:c.G47A:p.G16E 7qE3 NA NA chr7 113821952 ATCxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.934492 0.934492 1 168 2 0 44.014352 0.391304 0.02 -0.403333 28 18 773 488 60 60 0 0 CC 28.868271 96 0 2670 0 KEEP - Olfr693 YES MNNG_3 chr7 116618530 116618530 C T intronic Trim66 NA NA intronic Trim66 NA NA intronic ENSMUSG00000031026 NA NA 7qE3 NA NA chr7 116618530 ATGxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.999859 35 0 0 12.192113 0.454545 0.02 -0.096448 6 5 167 131 60 60 0 0 CC 5.414275 18 0 504 0 KEEP - Trim66 YES MNNG_3 chr7 118068083 118068083 C T exonic Mrvi1 nonsynonymous SNV NM_010826:c.G698A:p.G233D exonic Mrvi1 nonsynonymous SNV uc009jft.1:c.G698A:p.G233D exonic ENSMUSG00000005611 nonsynonymous SNV ENSMUST00000127935:c.G80A:p.G27D 7qF1 NA NA chr7 118068083 GGGxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 163 0 0 80.434392 0.484848 0.02 0.913305 34 32 916 850 60 60 0 0 CC 22.225531 74 0 2018 0 KEEP - Mrvi1 YES MNNG_3 chr7 118628549 118628549 C A exonic Galnt18 nonsynonymous SNV NM_173739:c.G1722T:p.Q574H exonic Galntl4 nonsynonymous SNV uc009jgc.1:c.G1722T:p.Q574H exonic ENSMUSG00000038296 nonsynonymous SNV ENSMUST00000049430:c.G1722T:p.Q574H 7qF1 NA NA chr7 118628549 TACxTGG C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.851669 0.851984 0.99963 73 2 0 43.661703 0.473684 0.02 -0.333157 20 18 559 465 60 60 0 0 CC 8.723577 29 0 821 0 KEEP - Galnt18 NO MNNG_3 chr7 123478125 123478125 C T upstream Rps13 NA NA upstream Rps13 NA NA upstream ENSMUSG00000090862 NA NA 7qF1 NA NA chr7 123478125 CCGxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 88 0 0 23.245673 0.888889 0.02 -0.236704 1 8 28 208 60 60 0 0 CC 13.774024 46 0 1280 0 KEEP - Rps13 YES MNNG_3 chr7 125334446 125334446 C T intronic Smg1 NA NA intronic Smg1 NA NA intronic ENSMUSG00000030655 NA NA 7qF2 NA NA chr7 125334446 AACxAAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 77 1 0 44.158749 0.586207 0.02 -0.280555 12 17 338 446 60 60 0 0 CC 11.130559 37 0 1058 0 KEEP - Smg1 YES MNNG_3 chr7 128813718 128813718 C T intronic Usp31 NA NA intronic Usp31 NA NA intronic ENSMUSG00000063317 NA NA 7qF2 NA NA chr7 128813718 GTGxTTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 82 0 0 22.456155 0.344828 0.02 -0.254269 19 10 529 258 60 60 0 0 CC 13.535544 45 0 1256 0 KEEP - Usp31 YES MNNG_3 chr7 130429820 130429820 C T intronic Arhgap17 NA NA intronic Arhgap17 NA NA exonic ENSMUSG00000030766 nonsynonymous SNV ENSMUST00000010403:c.G2156A:p.G719D 7qF3 NA NA chr7 130429820 ACAxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 140 0 0 45.513106 0.344828 0.02 0.991469 38 20 1048 522 60 60 0 0 CC 19.851786 66 0 1836 0 KEEP - Arhgap17 YES MNNG_3 chr7 130435528 130435528 A G intronic Arhgap17 NA NA intronic Arhgap17 NA NA intronic ENSMUSG00000030766 NA NA 7qF3 NA NA chr7 130435528 AGCxCAA A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.954491 0.954491 1 116 0 0 68.101812 0.604167 0.02 -0.429159 19 29 494 683 60 60 0 0 AA 15.932638 53 0 1410 0 KEEP - Arhgap17 NO MNNG_3 chr7 13215286 13215286 C G intronic Vmn2r54 NA NA intronic Vmn2r54 NA NA intronic ENSMUSG00000053088 NA NA 7qA1 "Score=0.967068;Name=No.98185,chr7:13238135" NA chr7 13215286 GTCxAAA C G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 308 0 128 71.854493 0.444444 0.02 1.142795 35 28 995 773 60 37 0 0 CC 49.337098 164 0 4722 0 KEEP - Vmn2r54 NO MNNG_3 chr7 132787453 132787453 C T exonic Gtf3c1 nonsynonymous SNV NM_207239:c.G5780A:p.G1927D exonic Gtf3c1 nonsynonymous SNV uc009jqi.1:c.G1394A:p.G465D exonic ENSMUSG00000032777 nonsynonymous SNV ENSMUST00000106423:c.G5492A:p.G1831D 7qF3 NA NA chr7 132787453 ACAxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 76 0 0 61.207784 0.648649 0.02 -0.324284 13 24 355 602 60 60 0 0 CC 8.722152 29 0 797 0 KEEP - Gtf3c1 YES MNNG_3 chr7 133615622 133615622 C T exonic Sh2b1 nonsynonymous SNV NM_001081459:c.G904A:p.G302R exonic Sh2b1 nonsynonymous SNV uc009jri.1:c.G904A:p.G302R exonic ENSMUSG00000030733 nonsynonymous SNV ENSMUST00000032978:c.G904A:p.G302R 7qF3 NA NA chr7 133615622 CTCxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 200 4 0 92.657927 0.467532 0.02 0.913383 41 36 1149 986 60 60 0 0 CC 29.146491 97 0 2696 0 KEEP - Sh2b1 YES MNNG_3 chr7 134133032 134133032 C T intronic Mvp NA NA intronic Mvp NA NA intronic ENSMUSG00000030681 NA NA 7qF3 NA NA chr7 134133032 ACCxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739604 0.739671 0.999909 60 0 0 36.053264 0.4375 0.02 -0.280604 18 14 499 389 60 60 0 0 CC 7.218821 24 0 666 0 KEEP - Mvp YES MNNG_3 chr7 135683531 135683531 C T exonic Bag3 synonymous SNV NM_013863:c.C231T:p.R77R exonic Bag3 synonymous SNV uc009jzb.2:c.C231T:p.R77R exonic ENSMUSG00000030847 synonymous SNV ENSMUST00000033136:c.C231T:p.R77R 7qF3 NA NA chr7 135683531 CCGxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 231 0 0 90.800512 0.422222 0.02 0.790722 52 38 1434 993 60 60 0 0 CC 28.670143 96 0 2530 0 KEEP + Bag3 YES MNNG_3 chr7 136750055 136750055 C T exonic Wdr11 nonsynonymous SNV NM_172255:c.C1019T:p.T340I exonic Wdr11 nonsynonymous SNV uc009jzm.2:c.C1019T:p.T340I exonic ENSMUSG00000042055 nonsynonymous SNV ENSMUST00000084519:c.C1019T:p.T340I 7qF3 NA NA chr7 136750055 TTAxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 73 0 0 26.819633 0.5 0.02 -0.201642 11 11 303 282 60 60 0 0 CC 11.128449 37 0 1028 0 KEEP + Wdr11 YES MNNG_3 chr7 137495614 137495614 T C intergenic "Fgfr2(dist=85292),Ate1(dist=39394)" NA NA intergenic "Fgfr2(dist=85292),Ate1(dist=39394)" NA NA ncRNA_exonic ENSMUSG00000082988 NA NA 7qF3 NA NA chr7 137495614 GACxCGT T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 81 0 0 39.612272 0.380952 0.02 -0.368232 26 16 703 441 60 60 0 0 TT 9.323656 31 0 859 0 KEEP NA Fgfr2 NO MNNG_3 chr7 13845287 13845287 C T exonic 6330408A02Rik nonsynonymous SNV NM_177312:c.G2290A:p.A764T exonic 6330408A02Rik nonsynonymous SNV uc012ezk.1:c.G982A:p.A328T exonic ENSMUSG00000070814 nonsynonymous SNV ENSMUST00000108532:c.G2290A:p.A764T 7qA1 NA NA chr7 13845287 CTGxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 299 0 0 100.26547 0.403846 0.02 2.088271 62 42 1691 1107 60 60 0 0 CC 42.99102 143 0 3932 0 KEEP - 6330408A02Rik YES MNNG_3 chr7 139249397 139249397 C T exonic Cpxm2 nonsynonymous SNV NM_018867:c.G1423A:p.E475K exonic Cpxm2 nonsynonymous SNV uc009kbu.2:c.G1423A:p.E475K exonic ENSMUSG00000030862 nonsynonymous SNV ENSMUST00000033149:c.G1423A:p.E475K 7qF3 NA NA chr7 139249397 CCTxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 164 0 0 72.98366 0.453125 0.02 1.036141 35 29 998 783 60 60 0 0 CC 24.96858 83 0 2381 0 KEEP - Cpxm2 YES MNNG_3 chr7 140884282 140884282 C T intronic Uros NA NA exonic Uros nonsynonymous SNV uc009kdh.1:c.G452A:p.R151K exonic ENSMUSG00000030979 nonsynonymous SNV ENSMUST00000106144:c.G452A:p.R151K 7qF3 NA NA chr7 140884282 TGCxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 378 3 0 141.794939 0.407143 0.02 1.958524 83 57 2339 1557 60 60 0 0 CC 52.622787 175 0 4930 0 KEEP - Uros YES MNNG_3 chr7 147482024 147482024 C T exonic 5830411N06Rik nonsynonymous SNV NM_001128145:c.C1301T:p.S434L exonic 5830411N06Rik nonsynonymous SNV uc009khl.1:c.C1301T:p.S434L exonic ENSMUSG00000054672 nonsynonymous SNV ENSMUST00000059882:c.C1301T:p.S434L 7qF4 NA NA chr7 147482024 ATTxAGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865686 0.865745 0.999931 70 0 0 53.914513 0.538462 0.02 -0.34192 18 21 513 556 60 60 0 0 CC 7.520846 25 0 718 0 KEEP + 5830411N06Rik YES MNNG_3 chr7 147483922 147483922 C T exonic 5830411N06Rik synonymous SNV NM_001128145:c.C2569T:p.L857L exonic 5830411N06Rik synonymous SNV uc012fwj.1:c.C2569T:p.L857L exonic ENSMUSG00000054672 synonymous SNV ENSMUST00000093984:c.C2569T:p.L857L 7qF4 NA NA chr7 147483922 GAGxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693605 0.693668 0.999909 57 0 0 44.808416 0.566667 0.02 -0.26273 13 17 351 456 60 60 0 0 CC 7.219256 24 0 683 0 KEEP + 5830411N06Rik YES MNNG_3 chr7 148429628 148429628 C T intronic Phrf1 NA NA UTR5 Phrf1 NA NA UTR5 ENSMUSG00000038611 NA NA 7qF5 NA NA chr7 148429628 TGAxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 98 0 0 43.663354 0.473684 0.02 -0.33316 20 18 551 465 60 60 0 0 CC 15.010387 50 0 1332 0 KEEP + Phrf1 YES MNNG_3 chr7 148824969 148824969 C T exonic Muc6 unknown UNKNOWN exonic Muc6 nonsynonymous SNV uc009klu.2:c.G5098A:p.G1700R exonic ENSMUSG00000048191 nonsynonymous SNV ENSMUST00000062451:c.G5479A:p.G1827R 7qF5 NA NA chr7 148824969 GTCxCTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 941 3 0 44.917113 0.084142 0.02 6.551998 283 26 7821 712 70 60 0 0 CC 151.102996 503 0 13817 0 KEEP - Muc6 YES MNNG_3 chr7 148933408 148933408 G T exonic Muc2 unknown UNKNOWN exonic Muc2 nonsynonymous SNV uc009kma.2:c.G4512T:p.L1504F exonic ENSMUSG00000025515 nonsynonymous SNV ENSMUST00000026590:c.G4941T:p.L1647F 7qF5 NA NA chr7 148933408 TTTxCCC G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161432 0.162467 0.993634 27 0 0 25.605322 0.692308 0.02 -0.113996 4 9 113 248 60 60 0 0 GG 3.589727 12 0 323 0 KEEP + Muc2 NO MNNG_3 chr7 148979833 148979833 C T exonic Muc5ac synonymous SNV NM_010844:c.C1269T:p.C423C exonic Muc5ac synonymous SNV uc009kmb.1:c.C1269T:p.C423C exonic ENSMUSG00000037974 synonymous SNV ENSMUST00000041924:c.C1269T:p.C423C 7qF5 NA NA chr7 148979833 CTGxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 70 0 0 43.634275 0.548387 0.02 -0.271797 14 17 384 448 60 60 0 0 CC 9.324302 31 0 861 0 KEEP + Muc5ac YES MNNG_3 chr7 149171408 149171408 C T intronic Brsk2 NA NA intronic Brsk2 NA NA intronic ENSMUSG00000053046 NA NA 7qF5 NA NA chr7 149171408 GGCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 42 0 0 12.324553 0.384615 0.02 -0.113952 8 5 213 137 60 60 0 0 CC 6.916918 23 0 632 0 KEEP + Brsk2 YES MNNG_3 chr7 149694272 149694272 C T intronic Tnnt3 NA NA intronic Tnnt3 NA NA intronic ENSMUSG00000061723 NA NA 7qF5 NA NA chr7 149694272 GATxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 274 2 0 81.593463 0.409639 0.02 0.87005 49 34 1362 898 60 60 0 0 CC 43.002652 143 0 4016 0 KEEP + Tnnt3 YES MNNG_3 chr7 152452641 152452641 C T intronic Tpcn2 NA NA intronic Tpcn2 NA NA intronic ENSMUSG00000048677 NA NA 7qF5 NA NA chr7 152452641 GACxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760818 0.760887 0.999909 63 0 0 43.609882 0.545455 0.02 -0.288254 15 18 397 450 60 60 0 0 CC 7.215591 24 0 639 0 KEEP - Tpcn2 YES MNNG_3 chr7 17047133 17047133 C T exonic Npas1 nonsynonymous SNV NM_008718:c.G962A:p.S321N exonic Npas1 nonsynonymous SNV uc009fhv.2:c.G962A:p.S321N exonic ENSMUSG00000001988 nonsynonymous SNV ENSMUST00000002053:c.G962A:p.S321N 7qA2 NA NA chr7 17047133 CTGxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 35 0 0 15.833722 0.411765 0.02 -0.14903 10 7 278 175 60 60 0 0 CC 4.512577 15 0 433 0 KEEP - Npas1 YES MNNG_3 chr7 17415653 17415653 C T intronic Strn4 NA NA intronic Strn4 NA NA intronic ENSMUSG00000030374 NA NA 7qA2 NA NA chr7 17415653 ATCxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120013 0.120436 0.99649 28 0 0 19.605789 0.636364 0.02 -0.09646 4 7 113 194 60 60 0 0 CC 4.511026 15 0 410 0 KEEP + Strn4 YES MNNG_3 chr7 19145767 19145767 C T exonic Psg27 nonsynonymous SNV NM_001037168:c.G1063A:p.D355N exonic Psg27 nonsynonymous SNV uc009fjn.1:c.G1063A:p.D355N exonic ENSMUSG00000070797 nonsynonymous SNV ENSMUST00000094794:c.G1063A:p.D355N 7qA3 NA NA chr7 19145767 AGTxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 210 2 0 84.823624 0.425 0.02 0.895836 46 34 1305 923 60 60 0 0 CC 33.390981 111 0 3177 0 KEEP - Psg27 YES MNNG_3 chr7 19200076 19200076 G A exonic Psg23 synonymous SNV NM_020261:c.C154T:p.L52L exonic Psg23 synonymous SNV uc009fjo.1:c.C154T:p.L52L exonic ENSMUSG00000074359 synonymous SNV ENSMUST00000057810:c.C154T:p.L52L 7qA3 "Score=0.925617;Name=No.98800,chr7:19200010,No.98800,chr7:19150524" NA chr7 19200076 GTAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.99993 0.99993 1 230 0 0 15.940522 0.09375 0.02 0.755496 87 9 2457 246 60 46 0 0 GG 33.392515 111 0 3190 0 KEEP - Psg23 YES MNNG_3 chr7 19240361 19240361 G A exonic Psg21 synonymous SNV NM_027403:c.C154T:p.L52L exonic Psg21 synonymous SNV uc009fjp.1:c.C154T:p.L52L exonic ENSMUSG00000070796 synonymous SNV ENSMUST00000094793:c.C154T:p.L52L 7qA3 "Score=0.925617;Name=No.98800,chr7:19150524" NA chr7 19240361 GTAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 206 4 13 104.692656 0.445652 0.02 0.773072 51 41 1449 1126 60 60 0 0 GG 26.472996 88 0 2522 0 KEEP - Psg21 YES MNNG_3 chr7 19665814 19665814 G A exonic Dmwd nonsynonymous SNV NM_010058:c.G1039A:p.V347I exonic Dmwd nonsynonymous SNV uc009fkl.2:c.G103A:p.V35I exonic ENSMUSG00000030410 nonsynonymous SNV ENSMUST00000032570:c.G1039A:p.V347I 7qA3 NA NA chr7 19665814 TTAxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 146 2 0 64.81809 0.440678 0.02 1.169129 33 26 925 700 60 60 0 0 GG 20.756702 69 0 1974 0 KEEP + Dmwd YES MNNG_3 chr7 24202314 24202314 G A exonic Nlrp5 nonsynonymous SNV NM_001039143:c.G395A:p.G132D exonic Nlrp5 nonsynonymous SNV uc009fof.1:c.G395A:p.G132D exonic ENSMUSG00000015721 nonsynonymous SNV ENSMUST00000086341:c.G395A:p.G132D 7qA3 "Score=0.925456;Name=No.98229,chr7:15153967" NA chr7 24202314 GAGxTGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 61 0 0 35.522881 0.56 0.02 -0.21918 11 14 309 363 60 60 0 0 GG 9.023444 30 0 833 0 KEEP + Nlrp5 YES MNNG_3 chr7 25094206 25094206 G A exonic Zfp94 nonsynonymous SNV NM_009568:c.C8T:p.T3I exonic Zfp94 nonsynonymous SNV uc009fpg.2:c.C8T:p.T3I exonic ENSMUSG00000074282 nonsynonymous SNV ENSMUST00000098693:c.C26T:p.T9I 7qA3 NA NA chr7 25094206 AAGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 145 2 0 33.96546 0.357143 0.02 -0.385759 27 15 738 387 60 60 0 0 GG 22.24638 74 0 2016 0 KEEP - Zfp94 YES MNNG_3 chr7 25136536 25136536 C T intronic Lypd5 NA NA intronic Lypd5 NA NA intronic ENSMUSG00000030484 NA NA 7qA3 NA NA chr7 25136536 CTTxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 262 5 0 85.177187 0.485294 0.02 1.001069 35 33 990 899 60 60 0 0 CC 43.920247 146 0 4185 0 KEEP + Lypd5 YES MNNG_3 chr7 25766596 25766596 G A exonic Atp1a3 synonymous SNV NM_144921:c.C2484T:p.N828N exonic Atp1a3 synonymous SNV uc009fre.1:c.C2484T:p.N828N exonic ENSMUSG00000040907 synonymous SNV ENSMUST00000080882:c.C2484T:p.N828N 7qA3 NA NA chr7 25766596 TGGxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 100 0 0 55.842716 0.55 0.02 -0.350477 18 22 469 573 60 60 0 0 GG 14.402444 48 0 1273 0 KEEP - Atp1a3 YES MNNG_3 chr7 26058495 26058495 G A intergenic "Erf(dist=22718),Cic(dist=8703)" NA NA exonic Cic synonymous SNV uc009fsa.2:c.G2631A:p.V877V exonic ENSMUSG00000005442 synonymous SNV ENSMUST00000094696:c.G2631A:p.V877V 7qA3 NA NA chr7 26058495 TGTxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999997 68 0 0 30.982155 0.433333 0.02 -0.263039 17 13 480 337 60 60 0 0 GG 9.624326 32 0 896 0 KEEP NA Erf YES MNNG_3 chr7 26082053 26082053 C T intronic Pafah1b3 NA NA intronic Pafah1b3 NA NA intronic ENSMUSG00000005447 NA NA 7qA3 NA NA chr7 26082053 GTGxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 59 0 0 23.9696 0.434783 0.02 -0.200555 13 10 319 260 60 60 0 0 CC 8.409753 28 0 759 0 KEEP - Pafah1b3 YES MNNG_3 chr7 26507213 26507213 G A UTR3 Hnrnpul1 NA NA UTR3 Hnrnpul1 NA NA UTR3 ENSMUSG00000040725 NA NA 7qA3 "Score=0.948617;Name=No.96086,chr7:3886496" NA chr7 26507213 CAAxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612365 0.612407 0.999931 58 0 0 26.920076 0.407407 0.02 -0.236758 16 11 453 296 60 60 0 0 GG 7.519886 25 0 711 0 KEEP - Hnrnpul1 YES MNNG_3 chr7 26558527 26558527 G A intronic Axl NA NA intronic Axl NA NA intronic ENSMUSG00000002602 NA NA 7qA3 NA NA chr7 26558527 AGAxGCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 36 0 0 15.565459 0.461538 0.02 -0.122749 7 6 190 166 60 60 0 0 GG 4.812652 16 0 447 0 KEEP - Axl YES MNNG_3 chr7 28301707 28301707 G A exonic Prx nonsynonymous SNV NM_198048:c.G1030A:p.V344M exonic Prx nonsynonymous SNV uc012fgi.1:c.G613A:p.V205M exonic ENSMUSG00000053198 nonsynonymous SNV ENSMUST00000065487:c.G1030A:p.V344M 7qA3 NA NA chr7 28301707 GAGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.918171 0.918171 1 119 0 0 45.391062 0.431818 0.02 -0.385772 25 19 690 494 60 60 0 0 GG 17.142257 57 0 1549 0 KEEP + Prx YES MNNG_3 chr7 28938740 28938740 G A exonic 9530053A07Rik nonsynonymous SNV NM_001164655:c.G4432A:p.E1478K exonic 9530053A07Rik nonsynonymous SNV uc009fxx.2:c.G4432A:p.E1478K exonic ENSMUSG00000078776 nonsynonymous SNV ENSMUST00000150948:c.G4432A:p.E1478K 7qA3 NA NA chr7 28938740 CCTxAAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 199 3 0 67.352499 0.430769 0.02 1.02742 37 28 1049 733 60 60 0 0 GG 30.678033 102 0 2913 0 KEEP + 9530053A07Rik YES MNNG_3 chr7 29787428 29787428 G A intronic Map4k1 NA NA intronic Map4k1 NA NA intronic ENSMUSG00000037337 NA NA 7qB1 NA NA chr7 29787428 ATGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 67 0 0 25.118335 0.407407 0.02 -0.236706 16 11 435 278 60 60 0 0 GG 8.420592 28 0 760 0 KEEP + Map4k1 YES MNNG_3 chr7 29930836 29930836 G A exonic Rasgrp4 nonsynonymous SNV NM_001174155:c.G964A:p.E322K exonic Rasgrp4 nonsynonymous SNV uc009gat.1:c.G490A:p.E164K exonic ENSMUSG00000030589 nonsynonymous SNV ENSMUST00000032811:c.G964A:p.E322K 7qB1 NA NA chr7 29930836 CTGxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 132 0 0 70.057768 0.529412 0.02 1.150169 24 27 666 725 60 60 0 0 GG 17.144759 57 0 1604 0 KEEP + Rasgrp4 YES MNNG_3 chr7 31248652 31248652 A C exonic Nphs1 nonsynonymous SNV NM_019459:c.A1334C:p.K445T exonic Nphs1 nonsynonymous SNV uc009gem.1:c.A1292C:p.K431T exonic ENSMUSG00000006649 nonsynonymous SNV ENSMUST00000006825:c.A1334C:p.K445T 7qB1 NA NA chr7 31248652 AGAxGTC A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 104 0 0 23.782928 0.37931 0.02 -0.254222 18 11 500 269 60 60 0 0 AA 16.243663 54 0 1523 0 KEEP + Nphs1 NO MNNG_3 chr7 31444291 31444291 G T intronic Haus5 NA NA ncRNA_UTR5 Rbm42 NA NA intronic ENSMUSG00000078762 NA NA 7qB1 NA NA chr7 31444291 TGGxAAC G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 122 0 0 29.802763 0.304348 0.02 -0.429609 32 14 892 354 60 60 0 0 GG 17.739293 59 0 1642 0 KEEP - Haus5 NO MNNG_3 chr7 31744284 31744284 G A exonic Lsr synonymous SNV NM_001164185:c.C609T:p.A203A exonic Lsr synonymous SNV uc009ghl.2:c.C609T:p.A203A exonic ENSMUSG00000001247 synonymous SNV ENSMUST00000147431:c.C168T:p.A56A 7qB1 NA NA chr7 31744284 GGGxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.99986 43 0 0 27.842278 0.55 0.02 -0.175127 9 11 252 286 60 60 0 0 GG 5.714911 19 0 528 0 KEEP - Lsr YES MNNG_3 chr7 31917654 31917654 C T exonic Gramd1a stopgain SNV NM_027898:c.G1982A:p.W661X exonic Gramd1a stopgain SNV uc009gif.1:c.G1982A:p.W661X exonic ENSMUSG00000001248 stopgain SNV ENSMUST00000001280:c.G1982A:p.W661X 7qB1 NA NA chr7 31917654 GCCxACT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 134 0 0 48.959902 0.434783 0.02 -0.403308 26 20 722 531 60 60 0 0 CC 18.950647 63 0 1784 0 KEEP - Gramd1a YES MNNG_3 chr7 36268102 36268102 C T intergenic "Slc7a9(dist=17049),Tdrd12(dist=10527)" NA NA intergenic "Slc7a9(dist=17049),Tdrd12(dist=10527)" NA NA exonic ENSMUSG00000030491 nonsynonymous SNV ENSMUST00000108043:c.G2339A:p.R780K 7qB2 NA NA chr7 36268102 TTCxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 54 0 0 31.405074 0.48 0.02 -0.219234 13 12 372 332 60 60 0 0 CC 6.918625 23 0 651 0 KEEP NA Slc7a9 YES MNNG_3 chr7 3796246 3796246 A T intronic "Pira1,Pira11,Pira2,Pira4,Pira7" NA NA ncRNA_intronic Pirb NA NA intronic "ENSMUSG00000074417,ENSMUSG00000089942" NA NA 7qA1 "Score=0.991842;Name=No.96070,chr7:3667619" NA chr7 3796246 GACxCAG A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 89 0 4 6.352508 1 0.02 -0.035071 0 2 0 54 0 29 0 0 AA 20.451414 68 0 1855 0 KEEP NA Pira1 NO MNNG_3 chr7 3862812 3862812 C T intronic "Lilra6,Pira1" NA NA intronic "Lilra6,Pira1,Pira2" NA NA intronic ENSMUSG00000030427 NA NA 7qA1 "Score=0.942681;Name=No.96083,chr7:4224202" NA chr7 3862812 CTTxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 433 12 4 134.423794 0.439024 0.02 2.04608 69 54 1914 1453 60 60 0 0 CC 74.845356 249 0 7000 0 KEEP NA Lilra6 YES MNNG_3 chr7 4433999 4433999 G A exonic Ppp1r12c synonymous SNV NM_029834:c.C2193T:p.L731L exonic Ppp1r12c synonymous SNV uc009exq.1:c.C2193T:p.L731L exonic ENSMUSG00000019254 synonymous SNV ENSMUST00000167665:c.C789T:p.L263L 7qA1 NA NA chr7 4433999 AAGxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877601 0.877708 0.999879 67 0 0 64.949227 0.6 0.02 -0.350745 16 24 450 652 60 60 0 0 GG 6.609604 22 0 595 0 KEEP - Ppp1r12c YES MNNG_3 chr7 4492661 4492661 C T intronic Syt5 NA NA intronic Syt5 NA NA intronic ENSMUSG00000004961 NA NA 7qA1 NA NA chr7 4492661 AAAxGGG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 106 0 0 49.709278 0.466667 0.02 -0.403063 24 21 623 532 60 60 0 0 CC 14.130918 47 0 1241 0 KEEP - Syt5 YES MNNG_3 chr7 4656267 4656267 G A intronic Brsk1 NA NA intronic Brsk1 NA NA intronic ENSMUSG00000035390 NA NA 7qA1 NA NA chr7 4656267 TCTxTGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260933 0.260965 0.999879 50 0 0 25.1654 0.625 0.02 -0.140261 6 10 169 250 60 60 0 0 GG 6.618344 22 0 635 0 KEEP + Brsk1 YES MNNG_3 chr7 4658844 4658844 C T exonic Brsk1 nonsynonymous SNV NM_001003920:c.C1474T:p.P492S exonic Brsk1 nonsynonymous SNV uc009eyf.1:c.C1474T:p.P492S exonic ENSMUSG00000035390 nonsynonymous SNV ENSMUST00000048248:c.C1474T:p.P492S 7qA1 NA NA chr7 4658844 CAGxCAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 65 0 0 33.280451 0.52 0.02 -0.21919 12 13 326 346 60 60 0 0 CC 10.223689 34 0 912 0 KEEP + Brsk1 YES MNNG_3 chr7 4694720 4694720 C T intronic Suv420h2 NA NA intronic Suv420h2 NA NA intronic ENSMUSG00000059851 NA NA 7qA1 NA NA chr7 4694720 GGGxAAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076902 0.077336 0.994391 24 0 0 15.802701 0.75 0.02 -0.078891 2 6 56 149 60 70 0 0 CC 3.609423 12 0 338 0 KEEP + Suv420h2 YES MNNG_3 chr7 48544064 48544064 G A exonic Gm5592 nonsynonymous SNV NM_001033782:c.G1399A:p.E467K exonic Gm5592 nonsynonymous SNV uc009glk.1:c.G1399A:p.E467K exonic ENSMUSG00000072259 nonsynonymous SNV ENSMUST00000097044:c.G1399A:p.E467K 7qB3 "Score=0.960073;Name=No.101182,chr7:48330835" NA chr7 48544064 GGAxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 94 0 0 54.370335 0.458333 0.02 -0.420358 26 22 736 583 60 60 0 0 GG 12.33368 41 0 1168 0 KEEP + Gm5592 YES MNNG_3 chr7 4946039 4946039 C T exonic Zfp579 synonymous SNV NM_026741:c.G474A:p.T158T exonic Zfp579 synonymous SNV uc009ezc.1:c.G474A:p.T158T exonic ENSMUSG00000051550 synonymous SNV ENSMUST00000162731:c.G474A:p.T158T 7qA1 NA NA chr7 4946039 CACxGTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 57 0 0 31.939435 0.448276 0.02 -0.254164 16 13 401 344 60 60 0 0 CC 7.514437 25 0 648 0 KEEP - Zfp579 YES MNNG_3 chr7 50872281 50872281 G A exonic Zfp819 nonsynonymous SNV NM_028913:c.G817A:p.E273K exonic Zfp819 nonsynonymous SNV uc012fjh.1:c.G589A:p.E197K exonic ENSMUSG00000055102 nonsynonymous SNV ENSMUST00000116324:c.G817A:p.E273K 7qB4 NA NA chr7 50872281 GTTxAAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 63 0 0 28.701056 0.48 0.02 -0.22795 13 12 366 305 60 60 0 0 GG 8.423476 28 0 807 0 KEEP + Zfp819 YES MNNG_3 chr7 51051098 51051098 G A intronic Klk9 NA NA ncRNA_intronic AK134755 NA NA ncRNA_intronic ENSMUSG00000085370 NA NA 7qB4 NA NA chr7 51051098 CTAxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.998465 0.998465 1 144 0 0 70.250186 0.402778 0.02 0.939809 43 29 1207 775 70 60 0 0 GG 15.340821 51 0 1442 0 KEEP + Klk9 YES MNNG_3 chr7 51560336 51560336 G A exonic Clec11a nonsynonymous SNV NM_009131:c.C562T:p.L188F exonic Clec11a nonsynonymous SNV uc009gpb.2:c.C562T:p.L188F exonic ENSMUSG00000004473 nonsynonymous SNV ENSMUST00000004587:c.C562T:p.L188F 7qB4 NA NA chr7 51560336 CAAxGCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 34 0 0 27.92002 0.666667 0.02 -0.131532 5 10 142 273 60 60 0 0 GG 3.583552 15 1 415 8 KEEP - Clec11a YES MNNG_3 chr7 51796720 51796720 G A exonic Pold1 nonsynonymous SNV NM_011131:c.C889T:p.P297S exonic Pold1 nonsynonymous SNV uc009gpx.2:c.C889T:p.P297S exonic ENSMUSG00000038644 nonsynonymous SNV ENSMUST00000049343:c.C889T:p.P297S 7qB4 NA NA chr7 51796720 GTGxGTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 169 0 0 72.129002 0.446154 0.02 1.027509 36 29 974 777 60 60 0 0 GG 25.218755 84 0 2270 0 KEEP - Pold1 YES MNNG_3 chr7 52254248 52254248 G A splicing Irf3(NM_016849:exon2:c.165+1G>A) NA NA splicing "Irf3(uc009gsm.1:exon2:c.165+1G>A,uc009gsn.1:exon2:c.165+1G>A,uc012fka.1:exon1:c.165+1G>A)" NA NA splicing "ENSMUSG00000003184(ENSMUST00000003284:exon2:c.165+1G>A,ENSMUST00000107835:exon2:c.165+1G>A,ENSMUST00000107834:exon2:c.165+1G>A)" NA NA 7qB4 NA NA chr7 52254248 CAGxTGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 131 1 0 74.807764 0.516667 0.02 0.974181 29 31 790 781 60 60 0 0 GG 15.456723 61 1 1639 27 KEEP + Irf3 YES MNNG_3 chr7 52887633 52887633 G A exonic Rasip1 nonsynonymous SNV NM_028544:c.G1189A:p.E397K exonic Rasip1 nonsynonymous SNV uc009gwi.1:c.G1189A:p.E397K exonic ENSMUSG00000044562 nonsynonymous SNV ENSMUST00000057927:c.G1189A:p.E397K 7qB4 NA NA chr7 52887633 CGAxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 101 0 0 54.205148 0.5 0.02 -0.385375 22 22 615 570 60 60 0 0 GG 13.537503 45 0 1292 0 KEEP + Rasip1 YES MNNG_3 chr7 52897226 52897226 G A intronic Mamstr NA NA intronic Mamstr NA NA intronic ENSMUSG00000042918 NA NA 7qB4 NA NA chr7 52897226 TCAxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 44 0 0 13.782636 0.4 0.02 -0.131313 9 6 230 153 60 60 0 0 GG 7.51892 25 0 687 0 KEEP + Mamstr YES MNNG_3 chr7 52905724 52905724 G A exonic Fut2 synonymous SNV NM_018876:c.C993T:p.L331L exonic Fut2 synonymous SNV uc009gwn.1:c.C993T:p.L331L exonic ENSMUSG00000055978 synonymous SNV ENSMUST00000069800:c.C993T:p.L331L 7qB4 NA NA chr7 52905724 GGGxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.2608 0.260965 0.999366 36 0 0 14.164484 0.375 0.02 -0.140296 10 6 282 159 60 60 0 0 GG 5.103175 17 0 457 0 KEEP - Fut2 YES MNNG_3 chr7 53542125 53542125 G T exonic Otog nonsynonymous SNV NM_013624:c.G4280T:p.G1427V exonic Otog nonsynonymous SNV uc009gyk.2:c.G4280T:p.G1427V exonic ENSMUSG00000009487 nonsynonymous SNV ENSMUST00000164538:c.G4280T:p.G1427V 7qB4 NA NA chr7 53542125 AAGxCTG G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 153 0 0 12.508287 0.111111 0.02 0.947579 56 7 1551 187 70 60 0 0 GG 20.149865 67 0 1849 0 KEEP + Otog NO MNNG_3 chr7 56668286 56668286 C T intronic Nav2 NA NA intronic Nav2 NA NA intronic ENSMUSG00000052512 NA NA 7qB4 NA NA chr7 56668286 GTCxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 200 0 0 44.996404 0.316667 0.02 1.053648 41 19 1171 522 60 60 0 0 CC 33.392725 111 0 3194 0 KEEP + Nav2 YES MNNG_3 chr7 57203667 57203667 C T exonic Slc6a5 synonymous SNV NM_148931:c.C1908T:p.V636V exonic Slc6a5 synonymous SNV uc012fle.1:c.C1221T:p.V407V exonic ENSMUSG00000039728 synonymous SNV ENSMUST00000107605:c.C1908T:p.V636V 7qB5 NA NA chr7 57203667 TGTxATC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 268 2 0 89.010348 0.440476 0.02 0.852149 47 37 1328 964 60 60 0 0 CC 39.410388 131 0 3790 0 KEEP + Slc6a5 YES MNNG_3 chr7 63178165 63178165 C T exonic Cyfip1 nonsynonymous SNV NM_001164662:c.C2863T:p.P955S exonic "Cyfip1,Shyc" nonsynonymous SNV uc009hdo.2:c.C976T:p.P326S exonic ENSMUSG00000030447 nonsynonymous SNV ENSMUST00000032629:c.C2869T:p.P957S 7qB5 NA NA chr7 63178165 ATGxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 80 2 0 12.292163 0.454545 0.02 -0.09645 6 5 168 132 60 60 0 0 CC 15.906739 53 0 1445 0 KEEP + Cyfip1 YES MNNG_3 chr7 63463206 63463206 C T exonic Herc2 nonsynonymous SNV NM_010418:c.C12166T:p.L4056F exonic "Herc2,rjs" nonsynonymous SNV uc009hdx.1:c.C1297T:p.L433F exonic ENSMUSG00000030451 nonsynonymous SNV ENSMUST00000041015:c.C11944T:p.L3982F 7qB5 NA NA chr7 63463206 GCTxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 86 0 0 29.530072 0.363636 0.02 -0.289388 21 12 599 332 60 60 0 0 CC 12.03346 40 0 1152 0 KEEP + Herc2 YES MNNG_3 chr7 6522750 6522750 C T exonic Olfr1350 nonsynonymous SNV NM_146389:c.C47T:p.S16F exonic Olfr1350 nonsynonymous SNV uc009fbs.1:c.C47T:p.S16F exonic ENSMUSG00000056696 nonsynonymous SNV ENSMUST00000070985:c.C47T:p.S16F 7qA1 NA NA chr7 6522750 TCTxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 68 0 0 37.924244 0.483871 0.02 -0.271804 16 15 452 401 60 60 0 0 CC 9.024064 30 0 850 0 KEEP + Olfr1350 YES MNNG_3 chr7 71471571 71471571 C T exonic Mtmr10 nonsynonymous SNV NM_172742:c.C1229T:p.A410V exonic Mtmr10 nonsynonymous SNV uc009hgd.1:c.C1229T:p.A410V exonic ENSMUSG00000030522 nonsynonymous SNV ENSMUST00000032736:c.C1229T:p.A410V 7qC NA NA chr7 71471571 TGGxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 29 0 0 8.975932 0.363636 0.02 -0.113979 7 4 196 102 60 60 0 0 CC 3.907104 13 0 344 0 KEEP + Mtmr10 YES MNNG_3 chr7 73406920 73406920 C T intronic Lrrk1 NA NA ncRNA_intronic mKIAA1790 NA NA intronic ENSMUSG00000015133 NA NA 7qC NA NA chr7 73406920 CACxACA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 183 0 0 45.980737 0.327869 0.02 1.053722 41 20 1146 532 60 60 0 0 CC 26.756467 89 0 2497 0 KEEP - Lrrk1 YES MNNG_3 chr7 74812012 74812012 C T intronic Ttc23 NA NA intronic Ttc23 NA NA intronic ENSMUSG00000030555 NA NA 7qC NA NA chr7 74812012 AAGxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781026 0.78106 0.999957 69 0 0 47.921504 0.558824 0.02 -0.298079 15 19 410 490 60 60 0 0 CC 7.812996 26 0 707 0 KEEP + Ttc23 YES MNNG_3 chr7 88184145 88184145 C T exonic Zfp592 synonymous SNV NM_178707:c.C3267T:p.S1089S exonic Zfp592 synonymous SNV uc009ibp.2:c.C3267T:p.S1089S exonic ENSMUSG00000005621 synonymous SNV ENSMUST00000005761:c.C3267T:p.S1089S 7qD3 NA NA chr7 88184145 TTCxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 131 1 0 55.496336 0.44 0.02 -0.438442 28 22 787 599 60 60 0 0 CC 18.65 62 0 1746 0 KEEP + Zfp592 YES MNNG_3 chr7 88488686 88488686 C T exonic Rps17 nonsynonymous SNV NM_009092:c.G262A:p.V88I exonic Rps17 nonsynonymous SNV uc009ibv.1:c.G262A:p.V88I exonic ENSMUSG00000061787 nonsynonymous SNV ENSMUST00000080813:c.G262A:p.V88I 7qD3 NA NA chr7 88488686 AGAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 58 0 0 28.221877 0.5 0.02 -0.192902 11 11 304 296 60 60 0 0 CC 8.422151 28 0 781 0 KEEP - Rps17 YES MNNG_3 chr7 92155456 92155456 C T exonic Vmn2r66 stopgain SNV NM_001033878:c.G861A:p.W287X exonic Vmn2r66 stopgain SNV uc012foh.1:c.G861A:p.W287X exonic ENSMUSG00000072241 stopgain SNV ENSMUST00000071867:c.G420A:p.W140X 7qD3 NA NA chr7 92155456 TCTxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 136 0 0 70.255788 0.444444 0.02 1.044916 35 28 986 757 60 60 0 0 CC 18.952475 63 0 1808 0 KEEP - Vmn2r66 YES MNNG_3 chr7 93675335 93675335 G A exonic Olfr297 nonsynonymous SNV NM_146618:c.G67A:p.V23I exonic Olfr297 nonsynonymous SNV uc009ifc.1:c.G67A:p.V23I exonic ENSMUSG00000057067 nonsynonymous SNV ENSMUST00000071112:c.G67A:p.V23I 7qD3 NA NA chr7 93675335 AGGxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 203 5 3 7.141857 0.066667 0.02 0.816253 70 5 1901 127 60 23 0 0 GG 30.379907 101 0 2820 0 KEEP + Olfr297 YES MNNG_3 chr7 93734423 93734423 G T exonic Olfr295 nonsynonymous SNV NM_146851:c.G637T:p.A213S exonic Olfr295 nonsynonymous SNV uc009ifd.1:c.G637T:p.A213S exonic ENSMUSG00000059319 nonsynonymous SNV ENSMUST00000078447:c.G637T:p.A213S 7qD3 "Score=0.916591;Name=No.101516,chr7:93700865" NA chr7 93734423 ATTxCCA G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 261 2 0 10.732494 0.067308 0.02 2.18629 97 7 2639 185 60 60 0 0 GG 41.192778 137 0 3770 0 KEEP + Olfr295 NO MNNG_3 chr7 97960660 97960660 C T intergenic "Tmem126b(dist=336155),Dlg2(dist=278636)" NA NA intergenic "AK021007(dist=307310),Dlg2(dist=278636)" NA NA intronic ENSMUSG00000052572 NA NA 7qE1 "Score=0.95624;Name=No.60322,chr15:73923617" NA chr7 97960660 GATxTCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999997 47 0 1 12.692591 0.454545 0.02 -0.096459 6 5 171 136 60 60 0 0 CC 8.398327 31 1 892 8 KEEP NA Tmem126b YES MNNG_3 chr7 99780165 99780165 C T exonic Ankrd42 synonymous SNV NM_028665:c.G66A:p.R22R exonic Ankrd42 synonymous SNV uc009ihx.2:c.G66A:p.R22R exonic ENSMUSG00000041343 synonymous SNV ENSMUST00000056106:c.G66A:p.R22R 7qE1 NA NA chr7 99780165 CTTxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 72 0 0 21.029616 0.333333 0.02 -0.236759 18 9 508 242 60 60 0 0 CC 10.228115 34 0 972 0 KEEP - Ankrd42 YES MNNG_3 chr7 99780180 99780180 A T intronic Ankrd42 NA NA intronic Ankrd42 NA NA intronic ENSMUSG00000041343 NA NA 7qE1 NA NA chr7 99780180 TGAxAAG A T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 64 0 0 15.54013 0.307692 0.02 -0.227757 18 8 492 187 60 60 0 0 AA 8.723001 29 0 809 0 KEEP - Ankrd42 NO MNNG_3 chr8 107615465 107615465 T A exonic Ces3b nonsynonymous SNV NM_001159415:c.T1198A:p.S400T exonic Ces3b nonsynonymous SNV uc009nbn.2:c.T1198A:p.S400T exonic ENSMUSG00000062181 nonsynonymous SNV ENSMUST00000173088:c.T265A:p.S89T 8qD3 NA NA chr8 107615465 GGCxCAG T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 99 0 0 46.933552 0.487179 0.02 -0.341688 20 19 535 496 60 60 0 0 TT 13.235383 44 0 1238 0 KEEP + Ces3b NO MNNG_3 chr8 107900995 107900995 T A exonic Plekhg4 nonsynonymous SNV NM_001081333:c.T1040A:p.I347N exonic Plekhg4 nonsynonymous SNV uc009ncw.1:c.T1040A:p.I347N exonic ENSMUSG00000014782 nonsynonymous SNV ENSMUST00000160191:c.T833A:p.I278N 8qD3 NA NA chr8 107900995 TCAxTGA T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.909069 0.909069 1 125 0 0 42.489215 0.418605 0.02 -0.376911 25 18 641 466 60 60 0 0 TT 17.229042 60 1 1629 7 KEEP + Plekhg4 NO MNNG_3 chr8 108416557 108416557 C T intronic Edc4 NA NA intronic Edc4 NA NA intronic ENSMUSG00000036270 NA NA 8qD3 NA NA chr8 108416557 TCTxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 108 2 0 44.934583 0.548387 0.02 -0.271818 14 17 394 461 60 60 0 0 CC 17.447515 58 0 1650 0 KEEP + Edc4 YES MNNG_3 chr8 112256470 112256470 C T exonic Atxn1l synonymous SNV NM_001080930:c.G1059A:p.Q353Q exonic Atxn1l synonymous SNV uc009nji.1:c.G1059A:p.Q353Q exonic ENSMUSG00000069895 synonymous SNV ENSMUST00000093162:c.G1059A:p.Q353Q 8qD3 NA NA chr8 112256470 CCTxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457715 0.457757 0.999909 52 0 0 19.553248 0.363636 0.02 -0.192924 14 8 398 220 60 60 0 0 CC 7.219909 24 0 688 0 KEEP - Atxn1l YES MNNG_3 chr8 112478554 112478554 C T exonic Marveld3 nonsynonymous SNV NM_028584:c.G608A:p.G203D exonic Marveld3 nonsynonymous SNV uc009njq.2:c.G608A:p.G203D exonic ENSMUSG00000001672 nonsynonymous SNV ENSMUST00000051430:c.G608A:p.G203D 8qD3 NA NA chr8 112478554 ATGxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 155 3 0 43.337262 0.548387 0.02 -0.27171 14 17 365 445 60 60 0 0 CC 29.650377 99 0 2592 0 KEEP - Marveld3 YES MNNG_3 chr8 112745805 112745805 C T exonic Cmtr2 synonymous SNV NM_146215:c.C846T:p.H282H exonic Ftsjd1 synonymous SNV uc009nkp.2:c.C846T:p.H282H exonic ENSMUSG00000046441 synonymous SNV ENSMUST00000056972:c.C846T:p.H282H 8qE1 NA NA chr8 112745805 ACAxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 109 0 0 93.088786 0.625 0.02 1.106354 21 35 591 925 60 60 0 0 CC 14.73974 49 0 1387 0 KEEP + Cmtr2 YES MNNG_3 chr8 113404790 113404790 G A exonic Cog4 nonsynonymous SNV NM_133973:c.G2008A:p.V670I exonic Cog4 nonsynonymous SNV uc009nle.1:c.G1789A:p.V597I exonic ENSMUSG00000031753 nonsynonymous SNV ENSMUST00000174398:c.G1942A:p.V648I 8qE1 NA NA chr8 113404790 CCAxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 87 0 0 39.204358 0.5 0.02 -0.280305 16 16 427 412 60 60 0 0 GG 12.332437 41 0 1145 0 KEEP + Cog4 YES MNNG_3 chr8 114506102 114506102 G A exonic Adat1 nonsynonymous SNV NM_013925:c.C988T:p.P330S exonic Adat1 nonsynonymous SNV uc009nnc.1:c.C988T:p.P330S exonic ENSMUSG00000031949 nonsynonymous SNV ENSMUST00000120457:c.C988T:p.P330S 8qE1 NA NA chr8 114506102 ACGxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 185 0 0 90.280965 0.492958 0.02 0.9762 36 35 957 949 60 60 0 0 GG 27.951194 93 0 2548 0 KEEP - Adat1 YES MNNG_3 chr8 11454418 11454418 C T exonic Rab20 nonsynonymous SNV NM_011227:c.G281A:p.R94K exonic Rab20 nonsynonymous SNV uc009kvd.1:c.G281A:p.R94K exonic ENSMUSG00000031504 nonsynonymous SNV ENSMUST00000033900:c.G281A:p.R94K 8qA1.1 NA NA chr8 11454418 AATxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 47 0 0 13.430751 0.26087 0.02 -0.201679 17 6 481 163 60 60 0 0 CC 5.114436 17 0 494 0 KEEP - Rab20 YES MNNG_3 chr8 11619334 11619334 C T intronic Ankrd10 NA NA intronic Ankrd10 NA NA intronic ENSMUSG00000031508 NA NA 8qA1.1 NA NA chr8 11619334 CAGxATT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 90 0 0 33.040096 0.5 0.02 -0.245468 14 14 397 348 60 60 0 0 CC 14.428756 48 0 1344 0 KEEP - Ankrd10 YES MNNG_3 chr8 119583467 119583467 G A exonic Pkd1l2 nonsynonymous SNV NM_029686:c.C1898T:p.S633F exonic Pkd1l2 nonsynonymous SNV uc012gli.1:c.C1898T:p.S633F exonic ENSMUSG00000034416 nonsynonymous SNV ENSMUST00000109093:c.C1898T:p.S633F 8qE1 NA NA chr8 119583467 GCGxAGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 126 0 0 80.375629 0.534483 0.02 1.186667 27 31 765 830 60 60 0 0 GG 17.144118 57 0 1594 0 KEEP - Pkd1l2 YES MNNG_3 chr8 122139244 122139244 T G exonic Adad2 nonsynonymous SNV NM_029428:c.T823G:p.F275V exonic Adad2 nonsynonymous SNV uc009nqa.2:c.T823G:p.F275V exonic ENSMUSG00000024266 nonsynonymous SNV ENSMUST00000098361:c.T823G:p.F275V 8qE1 NA NA chr8 122139244 TTCxTCT T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 65 0 0 18.727574 0.333333 0.02 -0.236661 18 9 489 219 60 60 0 0 TT 8.118885 27 0 746 0 KEEP + Adad2 NO MNNG_3 chr8 122472629 122472629 C T exonic Usp10 nonsynonymous SNV NM_009462:c.C1486T:p.P496S exonic Usp10 nonsynonymous SNV uc009nqn.1:c.C1486T:p.P496S exonic ENSMUSG00000031826 nonsynonymous SNV ENSMUST00000108982:c.C175T:p.P59S 8qE1 NA NA chr8 122472629 GAAxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099708 0.099721 0.999869 36 0 0 12.27289 0.5 0.02 -0.087669 5 5 135 129 60 60 0 0 CC 6.316174 21 0 579 0 KEEP + Usp10 YES MNNG_3 chr8 123098783 123098783 C T intronic Gse1 NA NA intronic Gse1 NA NA intronic "ENSMUSG00000031822,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 123098783 ATGxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 159 2 0 92.042878 0.580645 0.02 0.947675 26 36 711 932 60 60 0 0 CC 20.448557 68 0 1838 0 KEEP + Gse1 YES MNNG_3 chr8 123152441 123152441 G A intronic 1190005I06Rik NA NA intronic 1190005I06Rik NA NA intronic "ENSMUSG00000043687,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 123152441 TTAxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 97 0 0 34.872616 0.411765 0.02 -0.298152 20 14 572 382 60 60 0 0 GG 12.334342 41 0 1181 0 KEEP - 1190005I06Rik YES MNNG_3 chr8 125627280 125627280 G A intronic Rpl13 NA NA intronic Rpl13 NA NA intronic "ENSMUSG00000000740,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 125627280 GAGxTCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 25 0 0 8.790847 0.333333 0.02 -0.105202 8 4 214 102 60 60 0 0 GG 3.291654 11 0 271 0 KEEP + Rpl13 YES MNNG_3 chr8 126044573 126044573 G A exonic Gas8 nonsynonymous SNV NM_018855:c.G73A:p.D25N exonic Gas8 nonsynonymous SNV uc009nwj.1:c.G73A:p.D25N exonic ENSMUSG00000040220 nonsynonymous SNV ENSMUST00000093043:c.G73A:p.D25N 8qE2 NA NA chr8 126044573 GAGxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 58 0 0 35.335774 0.619048 0.02 -0.18414 8 13 226 352 60 60 0 0 GG 8.419306 28 0 783 0 KEEP + Gas8 YES MNNG_3 chr8 126473036 126473036 C T exonic Nup133 nonsynonymous SNV NM_172288:c.G41A:p.G14E exonic Nup133 nonsynonymous SNV uc009nws.2:c.G41A:p.G14E exonic ENSMUSG00000039509 nonsynonymous SNV ENSMUST00000044795:c.G41A:p.G14E 8qE2 NA NA chr8 126473036 GTCxCCG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196288 0.196312 0.999879 48 0 0 30.378955 0.785714 0.02 -0.122729 3 11 86 283 60 60 0 0 CC 6.540811 22 0 555 0 KEEP - Nup133 YES MNNG_3 chr8 126862350 126862350 G A exonic Galnt2 nonsynonymous SNV NM_139272:c.G1318A:p.D440N exonic Galnt2 nonsynonymous SNV uc009nwz.1:c.G1318A:p.D440N exonic "ENSMUSG00000089704,ENSMUSG00000092329" nonsynonymous SNV ENSMUST00000034458:c.G1318A:p.D440N 8qE2 NA NA chr8 126862350 CCAxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78105 0.78106 0.999988 68 0 0 46.577653 0.529412 0.02 -0.297997 16 18 433 482 60 60 0 0 GG 8.122285 27 0 775 0 KEEP + Galnt2 YES MNNG_3 chr8 127236483 127236483 G A intronic Ttc13 NA NA intronic Ttc13 NA NA intronic ENSMUSG00000037300 NA NA 8qE2 NA NA chr8 127236483 GCAxGTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 50 0 0 19.369138 0.4 0.02 -0.184146 12 8 343 214 60 60 0 0 GG 6.918916 23 0 655 0 KEEP - Ttc13 YES MNNG_3 chr8 128297791 128297791 G A exonic Pcnxl2 synonymous SNV NM_175561:c.C4459T:p.L1487L exonic Pcnxl2 synonymous SNV uc009nyl.1:c.C130T:p.L44L exonic ENSMUSG00000060212 synonymous SNV ENSMUST00000119305:c.C130T:p.L44L 8qE2 NA NA chr8 128297791 CCAxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999998 87 0 0 54.042707 0.456522 0.02 -0.403375 25 21 706 578 60 60 0 0 GG 10.214451 34 0 947 0 KEEP - Pcnxl2 YES MNNG_3 chr8 13013992 13013992 C T exonic Mcf2l nonsynonymous SNV NM_178076:c.C3031T:p.L1011F exonic Mcf2l nonsynonymous SNV uc009kwp.1:c.C2842T:p.L948F exonic ENSMUSG00000031442 nonsynonymous SNV ENSMUST00000145067:c.C2842T:p.L948F 8qA1.1 NA NA chr8 13013992 AACxTCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 160 1 0 105.971622 0.57971 0.02 0.992387 29 40 817 1073 70 70 0 0 CC 25.264561 84 0 2360 0 KEEP + Mcf2l YES MNNG_3 chr8 13018759 13018759 C T exonic Mcf2l synonymous SNV NM_001159485:c.C3186T:p.L1062L exonic Mcf2l synonymous SNV uc009kwq.2:c.C2310T:p.L770L exonic ENSMUSG00000031442 synonymous SNV ENSMUST00000145067:c.C3231T:p.L1077L 8qA1.1 NA NA chr8 13018759 CCTxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 90 0 0 53.887589 0.525 0.02 -0.350706 19 21 538 559 60 60 0 0 CC 11.129356 37 0 1038 0 KEEP + Mcf2l YES MNNG_3 chr8 13188469 13188469 C T intronic Grtp1 NA NA intronic Grtp1 NA NA intronic ENSMUSG00000038515 NA NA 8qA1.1 NA NA chr8 13188469 ACTxATG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 85 0 0 24.629441 0.434783 0.02 -0.201673 13 10 366 267 60 60 0 0 CC 12.634936 42 0 1211 0 KEEP - Grtp1 YES MNNG_3 chr8 18740978 18740978 C T intronic "Angpt2,Mcph1" NA NA intronic "Angpt2,Mcph1" NA NA intronic "ENSMUSG00000031465,ENSMUSG00000039842" NA NA 8qA1.3 NA NA chr8 18740978 CAGxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 104 0 0 73.298971 0.568627 0.02 1.053262 22 29 567 746 60 60 0 0 CC 13.231488 44 0 1198 0 KEEP NA Angpt2 YES MNNG_3 chr8 28309806 28309806 C T exonic Got1l1 synonymous SNV NM_029674:c.G696A:p.Q232Q exonic Got1l1 synonymous SNV uc009lic.1:c.G696A:p.Q232Q exonic ENSMUSG00000039720 synonymous SNV ENSMUST00000038174:c.G696A:p.Q232Q 8qA2 NA NA chr8 28309806 GTAxTGT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 73 0 0 45.261239 0.586207 0.02 -0.254282 12 17 338 457 60 60 0 0 CC 11.430327 38 0 1069 0 KEEP - Got1l1 YES MNNG_3 chr8 42397516 42397516 C T exonic Pcm1 nonsynonymous SNV NM_023662:c.C4409T:p.T1470I exonic Pcm1 nonsynonymous SNV uc009lnt.1:c.C629T:p.T210I exonic ENSMUSG00000031592 nonsynonymous SNV ENSMUST00000045218:c.C4409T:p.T1470I 8qA4 NA NA chr8 42397516 AAAxATT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 49 0 0 33.342247 0.5 0.02 -0.245457 14 14 378 351 60 60 0 0 CC 5.714149 19 0 515 0 KEEP + Pcm1 YES MNNG_3 chr8 46393913 46393913 C T exonic Cyp4v3 nonsynonymous SNV NM_133969:c.G1226A:p.G409D exonic Cyp4v3 nonsynonymous SNV uc009lou.1:c.G1226A:p.G409D exonic ENSMUSG00000079057 nonsynonymous SNV ENSMUST00000095328:c.G1226A:p.G409D 8qB1.1 NA NA chr8 46393913 CCGxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 116 0 0 57.215082 0.5 0.02 -0.403312 23 23 640 601 60 60 0 0 CC 18.647831 62 0 1710 0 KEEP - Cyp4v3 YES MNNG_3 chr8 47110501 47110501 C T exonic Lrp2bp nonsynonymous SNV NM_026278:c.C832T:p.P278S exonic Lrp2bp nonsynonymous SNV uc009lps.1:c.C895T:p.P299S exonic ENSMUSG00000031637 nonsynonymous SNV ENSMUST00000066451:c.C895T:p.P299S 8qB1.1 NA NA chr8 47110501 ATCxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.023989 0.024074 0.99649 26 0 0 8.268881 0.6 0.02 -0.043845 2 3 56 83 60 60 0 0 CC 4.51135 15 0 415 0 KEEP + Lrp2bp YES MNNG_3 chr8 48278027 48278027 G A exonic Stox2 nonsynonymous SNV NM_001114311:c.C1751T:p.S584F exonic Stox2 nonsynonymous SNV uc009lqv.2:c.C1565T:p.S522F exonic ENSMUSG00000038143 nonsynonymous SNV ENSMUST00000079195:c.C1751T:p.S584F 8qB1.1 NA NA chr8 48278027 TAGxACG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 114 1 0 44.034426 0.4 0.02 -0.394494 27 18 730 486 60 60 0 0 GG 16.832445 56 0 1561 0 KEEP - Stox2 YES MNNG_3 chr8 49322005 49322005 C T exonic Tenm3 nonsynonymous SNV NM_001145937:c.G5852A:p.R1951K exonic Odz3 nonsynonymous SNV uc009lrr.2:c.G5852A:p.R1951K exonic ENSMUSG00000031561 nonsynonymous SNV ENSMUST00000110348:c.G5345A:p.R1782K 8qB1.2 NA NA chr8 49322005 CTTxTAT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 124 0 0 77.793814 0.46875 0.02 1.134004 34 30 964 827 60 60 0 0 CC 15.94421 53 0 1524 0 KEEP - Tenm3 YES MNNG_3 chr8 63433378 63433378 C T exonic Clcn3 nonsynonymous SNV NM_173876:c.G41A:p.G14E exonic "CLCN3,Clcn3" nonsynonymous SNV uc009ltk.2:c.G41A:p.G14E exonic ENSMUSG00000004319 nonsynonymous SNV ENSMUST00000056508:c.G41A:p.G14E 8qB3.1 NA NA chr8 63433378 CCTxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.385603 0.387407 0.995343 39 1 0 35.472193 0.65 0.02 -0.175365 7 13 197 349 60 60 0 0 CC 4.210964 14 0 393 0 KEEP - Clcn3 YES MNNG_3 chr8 71575140 71575140 C T intronic Slc18a1 NA NA intronic Slc18a1 NA NA ncRNA_intronic ENSMUSG00000089995 NA NA 8qB3.3 NA NA chr8 71575140 CTGxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 81 0 0 43.060021 0.529412 0.02 -0.297996 16 18 437 447 60 60 0 0 CC 12.898353 43 0 1156 0 KEEP - Slc18a1 YES MNNG_3 chr8 72867233 72867233 C T splicing "Upf1(NM_030680:exon4:c.446+1G>A,NM_001122829:exon4:c.446+1G>A)" NA NA splicing "Upf1(uc009mab.2:exon4:c.446+1G>A,uc012gfa.1:exon4:c.446+1G>A)" NA NA splicing ENSMUSG00000058301(ENSMUST00000075666:exon4:c.446+1G>A) NA NA 8qB3.3 NA NA chr8 72867233 CTAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 83 0 0 29.173777 0.361111 0.02 -0.31562 23 13 627 332 60 60 0 0 CC 11.428087 38 0 1041 0 KEEP - Upf1 YES MNNG_3 chr8 73985395 73985395 C T exonic Abhd8 nonsynonymous SNV NM_022419:c.G487A:p.G163S exonic Abhd8 nonsynonymous SNV uc009mdf.2:c.G487A:p.G163S exonic ENSMUSG00000007950 nonsynonymous SNV ENSMUST00000008094:c.G487A:p.G163S 8qB3.3 NA NA chr8 73985395 CACxCTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973964 0.973965 0.999999 104 0 0 56.770016 0.425926 0.02 1.221733 31 23 865 618 60 60 0 0 CC 10.828256 36 0 1001 0 KEEP - Abhd8 YES MNNG_3 chr8 74118635 74118635 C T exonic Pgls nonsynonymous SNV NM_025396:c.C464T:p.T155I exonic Pgls nonsynonymous SNV uc009meb.1:c.C464T:p.T155I exonic ENSMUSG00000031807 nonsynonymous SNV ENSMUST00000034264:c.C464T:p.T155I 8qB3.3 NA NA chr8 74118635 ATAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 164 0 0 104.666669 0.569444 0.02 0.957346 31 41 854 1065 60 60 0 0 CC 23.459406 78 0 2155 0 KEEP + Pgls YES MNNG_3 chr8 74123118 74123118 C T intronic Fam129c NA NA intronic Fam129c NA NA intronic "ENSMUSG00000031807,ENSMUSG00000043243" NA NA 8qB3.3 NA NA chr8 74123118 CCAxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 113 0 0 51.948887 0.456522 0.02 -0.403126 25 21 668 557 60 60 0 0 CC 15.339446 51 0 1412 0 KEEP + Fam129c YES MNNG_3 chr8 74153579 74153579 C T exonic Unc13a nonsynonymous SNV NM_001029873:c.G4882A:p.V1628M exonic Unc13a nonsynonymous SNV uc009mei.2:c.G4882A:p.V1628M exonic ENSMUSG00000034799 nonsynonymous SNV ENSMUST00000030170:c.G4882A:p.V1628M 8qB3.3 NA NA chr8 74153579 ACAxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.352299 0.353947 0.995343 37 0 0 25.057912 0.526316 0.02 -0.16658 9 10 247 260 60 60 0 0 CC 4.21096 14 0 389 0 KEEP - Unc13a YES MNNG_3 chr8 74519833 74519833 C T exonic Cyp4f18 synonymous SNV NM_024444:c.G870A:p.K290K exonic Cyp4f18 synonymous SNV uc009mfe.2:c.G870A:p.K290K exonic ENSMUSG00000003484 synonymous SNV ENSMUST00000003574:c.G870A:p.K290K 8qB3.3 NA NA chr8 74519833 GGCxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 113 0 0 44.316761 0.45 0.02 -0.350604 22 18 618 477 70 60 0 0 CC 18.941191 63 0 1759 0 KEEP - Cyp4f18 YES MNNG_3 chr8 74700268 74700268 C T exonic Rab8a nonsynonymous SNV NM_023126:c.C461T:p.A154V exonic Rab8a nonsynonymous SNV uc009mfj.1:c.C461T:p.A154V exonic ENSMUSG00000003037 nonsynonymous SNV ENSMUST00000003121:c.C461T:p.A154V 8qB3.3 NA NA chr8 74700268 AGGxCAA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076975 0.077336 0.995343 25 0 0 18.440211 0.777778 0.02 -0.078719 2 7 57 172 60 60 0 0 CC 4.21106 14 0 390 0 KEEP + Rab8a YES MNNG_3 chr8 75096169 75096169 C T intronic Tmem38a NA NA intronic Tmem38a NA NA intronic ENSMUSG00000031791 NA NA 8qB3.3 NA NA chr8 75096169 CCCxTAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227714 0.229173 0.993634 29 0 0 17.636456 0.466667 0.02 -0.131531 8 7 227 188 60 60 0 0 CC 3.609768 12 0 340 0 KEEP + Tmem38a YES MNNG_3 chr8 81029407 81029407 C T UTR3 Rbmxl1 NA NA UTR3 Rbmxrt NA NA UTR3 ENSMUSG00000037070 NA NA 8qC1 "Score=0.996129;Name=No.56303,chr14:44291460" NA chr8 81029407 TTTxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 372 0 17 129.518984 0.435897 0.02 2.160082 66 51 1883 1400 60 60 0 0 CC 57.410974 191 0 5460 0 KEEP - Rbmxl1 YES MNNG_3 chr8 86133995 86133995 C T exonic Dnajb1 nonsynonymous SNV NM_018808:c.C494T:p.T165I exonic Dnajb1 nonsynonymous SNV uc009mkp.2:c.C494T:p.T165I exonic ENSMUSG00000005483 nonsynonymous SNV ENSMUST00000005620:c.C494T:p.T165I 8qC2 NA NA chr8 86133995 TCAxCCA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 106 4 0 49.469538 0.454545 0.02 -0.394506 24 20 665 531 60 60 0 0 CC 12.297482 41 0 1114 0 KEEP + Dnajb1 YES MNNG_3 chr8 86658532 86658532 C G exonic Cc2d1a nonsynonymous SNV NM_145970:c.G2422C:p.A808P exonic Cc2d1a nonsynonymous SNV uc009mmb.1:c.G586C:p.A196P exonic ENSMUSG00000036686 nonsynonymous SNV ENSMUST00000117424:c.G2287C:p.A763P 8qC3 NA NA chr8 86658532 TAGxTGC C G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.488823 0.490544 0.99649 39 0 0 22.307855 0.391304 0.02 -0.201655 14 9 377 247 60 60 0 0 CC 4.510401 15 0 409 0 KEEP - Cc2d1a NO MNNG_3 chr8 86686190 86686190 C T intronic 4930432K21Rik NA NA intronic 4930432K21Rik NA NA intronic ENSMUSG00000008129 NA NA 8qC3 NA NA chr8 86686190 TCCxTTT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 62 0 0 20.445264 0.444444 0.02 -0.157833 10 8 275 220 60 60 0 0 CC 10.226679 34 0 956 0 KEEP + 4930432K21Rik YES MNNG_3 chr8 87251825 87251825 C T exonic Nfix nonsynonymous SNV NM_001081981:c.G577A:p.D193N exonic Nfix nonsynonymous SNV uc009mnc.1:c.G577A:p.D193N exonic ENSMUSG00000001911 nonsynonymous SNV ENSMUST00000063596:c.G616A:p.D206N 8qC3 NA NA chr8 87251825 TGTxCGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.259026 0.260965 0.99257 27 0 0 13.66352 0.375 0.02 -0.140277 10 6 279 154 60 60 0 0 CC 2.404401 8 0 216 0 KEEP - Nfix YES MNNG_3 chr8 87522393 87522393 C T exonic Hook2 nonsynonymous SNV NM_001167991:c.C1604T:p.T535I exonic Hook2 nonsynonymous SNV uc009moq.2:c.C1802T:p.T601I exonic ENSMUSG00000052566 nonsynonymous SNV ENSMUST00000064495:c.C1604T:p.T535I 8qC3 NA NA chr8 87522393 CCAxCCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 132 1 0 45.539778 0.44186 0.02 -0.377004 24 19 663 493 60 60 0 0 CC 19.171956 64 0 1729 0 KEEP + Hook2 YES MNNG_3 chr8 90838029 90838029 C T exonic Adcy7 synonymous SNV NM_001037723:c.C996T:p.Y332Y exonic Adcy7 synonymous SNV uc009mrh.2:c.C996T:p.Y332Y exonic ENSMUSG00000031659 synonymous SNV ENSMUST00000098521:c.C996T:p.Y332Y 8qC3 NA NA chr8 90838029 TTAxTAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 96 0 0 38.009026 0.380952 0.02 -0.368274 26 16 731 425 60 60 0 0 CC 11.429679 38 0 1069 0 KEEP + Adcy7 YES MNNG_3 chr8 95648516 95648516 G A intronic Ces1c NA NA intronic Ces1c NA NA intronic ENSMUSG00000057400 NA NA 8qC5 NA NA chr8 95648516 TGGxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 64 0 0 36.724936 0.483871 0.02 -0.271786 16 15 437 389 60 60 0 0 GG 7.519339 25 0 689 0 KEEP - Ces1c YES MNNG_3 chr8 95713517 95713517 C A intronic Ces1d NA NA intronic Ces1d NA NA intronic ENSMUSG00000056973 NA NA 8qC5 NA NA chr8 95713517 ATTxTGC C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 81 0 0 6.995656 0.148148 0.02 -0.24552 23 4 653 100 60 60 0 0 CC 13.537635 45 0 1296 0 KEEP - Ces1d NO MNNG_3 chr8 96947673 96947673 C T intergenic "Herpud1(dist=28415),9330175E14Rik(dist=9354)" NA NA intergenic "Herpud1(dist=28415),9330175E14Rik(dist=9354)" NA NA ncRNA_exonic ENSMUSG00000074153 NA NA 8qC5 NA NA chr8 96947673 TTTxTGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 87 0 0 28.929569 0.363636 0.02 -0.289381 21 12 599 326 60 60 0 0 CC 11.725315 39 0 1109 0 KEEP NA Herpud1 YES MNNG_3 chr8 97596715 97596715 C T exonic Ccdc135 synonymous SNV NM_001042715:c.C1617T:p.G539G exonic Ccdc135 synonymous SNV uc009mxs.1:c.C1617T:p.G539G exonic ENSMUSG00000031786 synonymous SNV ENSMUST00000058479:c.C1617T:p.G539G 8qD1 NA NA chr8 97596715 TGGxCTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612365 0.612407 0.999931 59 0 0 16.289755 0.296296 0.02 -0.236672 19 8 520 196 60 60 0 0 CC 7.216329 24 0 649 0 KEEP + Ccdc135 YES MNNG_3 chr9 100375390 100375390 G A exonic Il20rb synonymous SNV NM_001033543:c.C105T:p.N35N exonic Il20rb synonymous SNV uc009rev.2:c.C105T:p.N35N exonic ENSMUSG00000044244 synonymous SNV ENSMUST00000098458:c.C105T:p.N35N 9qE3.3 NA NA chr9 100375390 GAGxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 136 2 0 72.367486 0.54717 0.02 1.132719 24 29 651 744 60 60 0 0 GG 20.751454 69 0 1875 0 KEEP - Il20rb YES MNNG_3 chr9 103938030 103938030 G A intronic Nphp3 NA NA intronic Nphp3 NA NA intronic ENSMUSG00000032558 NA NA 9qF1 NA NA chr9 103938030 TTGxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 61 0 0 43.432231 0.64 0.02 -0.219196 9 16 248 429 60 60 0 0 GG 9.325266 31 0 879 0 KEEP + Nphp3 YES MNNG_3 chr9 105563763 105563763 G A exonic Pik3r4 nonsynonymous SNV NM_001081309:c.G2078A:p.C693Y exonic Pik3r4 nonsynonymous SNV uc009riq.1:c.G2078A:p.C693Y exonic ENSMUSG00000032571 nonsynonymous SNV ENSMUST00000065778:c.G2078A:p.C693Y 9qF1 NA NA chr9 105563763 ACTxCAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 79 0 0 43.039534 0.5 0.02 -0.315609 18 18 501 453 60 60 0 0 GG 10.526822 35 0 971 0 KEEP + Pik3r4 YES MNNG_3 chr9 105571373 105571373 G A exonic Pik3r4 nonsynonymous SNV NM_001081309:c.G2591A:p.G864E exonic Pik3r4 nonsynonymous SNV uc009rio.1:c.G2591A:p.G864E exonic ENSMUSG00000032571 nonsynonymous SNV ENSMUST00000065778:c.G2591A:p.G864E 9qF1 NA NA chr9 105571373 TTGxGTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877613 0.877708 0.999892 73 0 0 45.529295 0.45 0.02 -0.350745 22 18 613 489 60 60 0 0 GG 6.918737 23 0 651 0 KEEP + Pik3r4 YES MNNG_3 chr9 105677000 105677000 G A exonic Col6a6 synonymous SNV NM_001102607:c.C3141T:p.Y1047Y exonic Col6a6 synonymous SNV uc009ris.1:c.C3141T:p.Y1047Y exonic ENSMUSG00000043719 synonymous SNV ENSMUST00000060896:c.C3141T:p.Y1047Y 9qF1 NA NA chr9 105677000 CCTxTAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 274 2 0 105.853704 0.48913 0.02 0.684723 47 45 1309 1121 60 60 0 0 GG 41.771876 139 0 3806 0 KEEP - Col6a6 YES MNNG_3 chr9 106128059 106128059 G A exonic Tlr9 synonymous SNV NM_031178:c.G2217A:p.K739K exonic Tlr9 synonymous SNV uc009rjh.1:c.G2217A:p.K739K exonic ENSMUSG00000045322 synonymous SNV ENSMUST00000062241:c.G2217A:p.K739K 9qF1 NA NA chr9 106128059 CAAxACG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 150 0 0 91.113235 0.566667 0.02 1.071777 26 34 716 927 60 60 0 0 GG 23.161635 77 0 2194 0 KEEP + Tlr9 YES MNNG_3 chr9 106386771 106386771 G A exonic Rrp9 nonsynonymous SNV NM_145620:c.G1181A:p.G394D exonic Rrp9 nonsynonymous SNV uc009rkb.1:c.G1181A:p.G394D exonic ENSMUSG00000041506 nonsynonymous SNV ENSMUST00000047721:c.G1181A:p.G394D 9qF1 NA NA chr9 106386771 AAGxCTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 121 0 0 49.051115 0.466667 0.02 -0.393033 24 21 633 525 60 60 0 0 GG 17.080924 57 0 1516 0 KEEP + Rrp9 YES MNNG_3 chr9 107496036 107496036 G A downstream Ifrd2 NA NA exonic BY080835 nonsynonymous SNV uc009rme.1:c.C440T:p.S147L exonic ENSMUSG00000070285 nonsynonymous SNV ENSMUST00000093784:c.C440T:p.S147L 9qF1 NA NA chr9 107496036 CATxATT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 157 0 0 68.838917 0.460317 0.02 1.045024 34 29 963 739 60 60 0 0 GG 21.051182 70 0 1981 0 KEEP + Ifrd2 YES MNNG_3 chr9 107814259 107814259 G A intronic Mst1r NA NA intronic Mst1r NA NA intronic ENSMUSG00000032584 NA NA 9qF1 NA NA chr9 107814259 GAGxTGT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 107 0 0 68.990922 0.613636 0.02 -0.411797 17 27 469 689 60 60 0 0 GG 15.338551 51 0 1399 0 KEEP + Mst1r YES MNNG_3 chr9 108410572 108410572 C A intronic Qars NA NA intronic Qars NA NA intronic ENSMUSG00000032604 NA NA 9qF2 NA NA chr9 108410572 CTCxAGA C A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717215 0.717315 0.99986 56 0 0 30.004842 0.419355 0.02 -0.271273 18 13 504 330 60 60 0 0 CC 5.715524 19 0 539 0 KEEP + Qars NO MNNG_3 chr9 108522355 108522355 G A intronic Arih2 NA NA intronic Arih2 NA NA intronic ENSMUSG00000064145 NA NA 9qF2 NA NA chr9 108522355 TAAxGGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 268 3 0 106.42587 0.43 0.02 0.81839 57 43 1607 1156 60 60 0 0 GG 39.393244 131 0 3741 0 KEEP - Arih2 YES MNNG_3 chr9 108729017 108729017 G A exonic Celsr3 nonsynonymous SNV NM_080437:c.G367A:p.G123S exonic Celsr3 nonsynonymous SNV uc009rrb.1:c.G367A:p.G123S exonic ENSMUSG00000023473 nonsynonymous SNV ENSMUST00000024238:c.G367A:p.G123S 9qF2 NA NA chr9 108729017 CAGxGTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 85 0 0 34.339984 0.541667 0.02 -0.209896 11 13 288 353 60 60 0 0 GG 14.133987 47 0 1305 0 KEEP + Celsr3 YES MNNG_3 chr9 108941315 108941315 G A intronic Shisa5 NA NA intronic Shisa5 NA NA intronic ENSMUSG00000025647 NA NA 9qF2 NA NA chr9 108941315 CTAxGGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 38 0 0 18.840897 0.538462 0.02 -0.114 6 7 171 194 60 60 0 0 GG 5.113562 17 0 477 0 KEEP + Shisa5 YES MNNG_3 chr9 109045911 109045911 G A exonic Fbxw21 synonymous SNV NM_177069:c.C1176T:p.P392P exonic Fbxw21 synonymous SNV uc009rsa.1:c.C1176T:p.P392P exonic ENSMUSG00000047237 synonymous SNV ENSMUST00000054925:c.C1176T:p.P392P 9qF2 NA NA chr9 109045911 AAGxGGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 252 0 0 108.447381 0.488372 0.02 0.843253 44 42 1227 1143 60 60 0 0 GG 35.794015 119 0 3335 0 KEEP - Fbxw21 YES MNNG_3 chr9 110286907 110286907 G A exonic Scap nonsynonymous SNV NM_001001144:c.G3515A:p.S1172N exonic Scap nonsynonymous SNV uc009rtw.2:c.G3515A:p.S1172N exonic ENSMUSG00000032485 nonsynonymous SNV ENSMUST00000098350:c.G3515A:p.S1172N 9qF2 NA NA chr9 110286907 TTAxTAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693638 0.693668 0.999957 61 0 0 49.289597 0.633333 0.02 -0.263005 11 19 304 488 60 60 0 0 GG 7.819887 26 0 716 0 KEEP + Scap YES MNNG_3 chr9 110324241 110324241 G A exonic Ngp synonymous SNV NM_008694:c.G321A:p.Q107Q exonic Ngp synonymous SNV uc009rtz.2:c.G321A:p.Q107Q exonic ENSMUSG00000032484 synonymous SNV ENSMUST00000035061:c.G321A:p.Q107Q 9qF2 NA NA chr9 110324241 GCAxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 105 2 0 43.743683 0.5 0.02 -0.315444 18 18 500 460 60 60 0 0 GG 15.940744 53 0 1463 0 KEEP + Ngp YES MNNG_3 chr9 110740904 110740904 C T intronic Prss45 NA NA intronic Prss45 NA NA intronic ENSMUSG00000047257 NA NA 9qF3 NA NA chr9 110740904 TACxTTG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 65 0 0 27.18554 0.366667 0.02 -0.263069 19 11 534 305 60 60 0 0 CC 8.422667 28 0 792 0 KEEP + Prss45 YES MNNG_3 chr9 110794321 110794321 G A intronic Als2cl NA NA intronic Als2cl NA NA intronic ENSMUSG00000044037 NA NA 9qF3 NA NA chr9 110794321 CCAxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 130 2 0 62.101921 0.446429 0.02 1.106317 31 25 872 669 60 60 0 0 GG 16.244357 54 0 1542 0 KEEP + Als2cl YES MNNG_3 chr9 110796542 110796542 C T exonic Als2cl synonymous SNV NM_001146059:c.C1809T:p.Y603Y exonic Als2cl synonymous SNV uc009rvc.2:c.C1809T:p.Y603Y exonic ENSMUSG00000044037 synonymous SNV ENSMUST00000084926:c.C1809T:p.Y603Y 9qF3 NA NA chr9 110796542 CTAxAGC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 151 2 0 80.290863 0.53125 0.02 0.842558 30 34 819 833 60 60 0 0 CC 21.027834 70 0 1935 0 KEEP + Als2cl YES MNNG_3 chr9 110869014 110869014 G A exonic Lrrc2 nonsynonymous SNV NM_028838:c.G560A:p.G187E exonic Lrrc2 nonsynonymous SNV uc009rvh.1:c.G560A:p.G187E exonic ENSMUSG00000032495 nonsynonymous SNV ENSMUST00000035076:c.G560A:p.G187E 9qF3 NA NA chr9 110869014 TAGxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 81 0 0 31.490648 0.393939 0.02 -0.324437 20 13 563 349 60 60 0 0 GG 10.764233 36 0 981 0 KEEP + Lrrc2 YES MNNG_3 chr9 111177582 111177582 G A UTR3 Epm2aip1 NA NA UTR3 Epm2aip1 NA NA UTR3 ENSMUSG00000046785 NA NA 9qF3 NA NA chr9 111177582 GAGxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 115 0 0 48.428712 0.487179 0.02 -0.34187 20 19 541 511 60 60 0 0 GG 16.84609 56 0 1596 0 KEEP + Epm2aip1 YES MNNG_3 chr9 114343552 114343552 G A exonic Glb1 nonsynonymous SNV NM_009752:c.G770A:p.R257K exonic Glb1 nonsynonymous SNV uc009rxi.2:c.G449A:p.R150K exonic ENSMUSG00000045594 nonsynonymous SNV ENSMUST00000166595:c.G452A:p.R151K 9qF3 NA NA chr9 114343552 AGAxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 69 0 0 29.981073 0.413793 0.02 -0.263069 17 12 480 328 60 60 0 0 GG 8.422422 28 0 787 0 KEEP + Glb1 YES MNNG_3 chr9 115076205 115076205 G A exonic Osbpl10 nonsynonymous SNV NM_148958:c.G216A:p.M72I exonic Osbpl10 nonsynonymous SNV uc009ryn.1:c.G129A:p.M43I exonic ENSMUSG00000040875 nonsynonymous SNV ENSMUST00000046627:c.G216A:p.M72I 9qF3 NA NA chr9 115076205 GATxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 92 2 0 35.842597 0.46875 0.02 -0.28929 17 15 476 383 60 60 0 0 GG 13.230812 44 0 1249 0 KEEP + Osbpl10 YES MNNG_3 chr9 116018701 116018701 G A exonic Tgfbr2 nonsynonymous SNV NM_029575:c.C1175T:p.T392I exonic Tgfbr2 nonsynonymous SNV uc009ryt.2:c.C1175T:p.T392I exonic ENSMUSG00000032440 nonsynonymous SNV ENSMUST00000035014:c.C1175T:p.T392I 9qF3 NA NA chr9 116018701 CAGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 132 1 0 72.776513 0.483333 0.02 1.071284 31 29 862 770 60 60 0 0 GG 17.143425 57 0 1568 0 KEEP - Tgfbr2 YES MNNG_3 chr9 119087715 119087715 G A intronic Slc22a14 NA NA intronic Slc22a14 NA NA intronic ENSMUSG00000070280 NA NA 9qF3 NA NA chr9 119087715 GCTxCGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.99986 37 0 0 19.796563 0.5 0.02 -0.140283 8 8 223 208 60 60 0 0 GG 5.714427 19 0 521 0 KEEP - Slc22a14 YES MNNG_3 chr9 119130387 119130387 G A ncRNA_exonic Slc22a13b-ps NA NA exonic 9330176C04Rik synonymous SNV uc009sam.2:c.C442T:p.L148L exonic ENSMUSG00000092212 synonymous SNV ENSMUST00000174789:c.C442T:p.L148L 9qF3 NA NA chr9 119130387 GCAxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099708 0.099721 0.999869 38 0 1 6.678449 0.3 0.02 -0.087684 7 3 195 79 60 60 0 0 GG 6.305137 21 0 581 0 KEEP - Slc22a13b-ps YES MNNG_3 chr9 119139324 119139324 G A ncRNA_intronic Slc22a13b-ps NA NA intronic 9330176C04Rik NA NA intronic ENSMUSG00000092212 NA NA 9qF3 NA NA chr9 119139324 TATxGAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196298 0.196312 0.999931 41 0 0 20.259665 0.571429 0.02 -0.122737 6 8 166 206 60 60 0 0 GG 7.520597 25 0 713 0 KEEP - Slc22a13b-ps YES MNNG_3 chr9 119557260 119557260 G A exonic Scn10a stopgain SNV NM_001205321:c.C2173T:p.Q725X exonic Scn10a stopgain SNV uc009sbj.1:c.C1735T:p.Q579X exonic ENSMUSG00000034533 stopgain SNV ENSMUST00000084787:c.C2173T:p.Q725X 9qF4 NA NA chr9 119557260 TCTxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.91817 0.918171 0.999999 87 0 0 55.744749 0.511628 0.02 -0.385773 21 22 592 582 60 60 0 0 GG 10.829211 36 0 1019 0 KEEP - Scn10a YES MNNG_3 chr9 119600615 119600615 G A exonic Scn10a synonymous SNV NM_001205321:c.C336T:p.L112L exonic Scn10a synonymous SNV uc009sbg.2:c.C336T:p.L112L exonic ENSMUSG00000034533 synonymous SNV ENSMUST00000084787:c.C336T:p.L112L 9qF4 NA NA chr9 119600615 GAAxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 123 0 0 53.320125 0.526316 0.02 -0.33322 18 20 506 552 60 60 0 0 GG 20.454674 68 0 1946 0 KEEP - Scn10a YES MNNG_3 chr9 119863391 119863391 G A exonic Ttc21a nonsynonymous SNV NM_028735:c.G1640A:p.C547Y exonic Ttc21a nonsynonymous SNV uc009sbr.1:c.G41A:p.C14Y exonic ENSMUSG00000032514 nonsynonymous SNV ENSMUST00000035100:c.G1640A:p.C547Y 9qF4 NA NA chr9 119863391 TGTxCTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 138 0 0 98.810929 0.606061 0.02 0.824936 26 40 735 990 60 60 0 0 GG 15.334067 51 0 1419 0 KEEP + Ttc21a YES MNNG_3 chr9 120029477 120029477 G A exonic Slc25a38 nonsynonymous SNV NM_144793:c.G439A:p.V147I exonic Slc25a38 nonsynonymous SNV uc009scc.1:c.G439A:p.V147I exonic ENSMUSG00000032519 nonsynonymous SNV ENSMUST00000035106:c.G439A:p.V147I 9qF4 NA NA chr9 120029477 TCGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 93 0 0 51.170282 0.512195 0.02 -0.368204 20 21 545 535 60 60 0 0 GG 12.930746 43 0 1161 0 KEEP + Slc25a38 YES MNNG_3 chr9 123009427 123009427 G A exonic Zdhhc3 nonsynonymous SNV NM_026917:c.C260T:p.A87V exonic Zdhhc3 nonsynonymous SNV uc009sfq.2:c.C260T:p.A87V exonic ENSMUSG00000025786 nonsynonymous SNV ENSMUST00000129862:c.C41T:p.A14V 9qF4 NA NA chr9 123009427 AAGxCCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 128 2 0 77.516414 0.492063 0.02 1.044975 32 31 884 817 60 60 0 0 GG 14.120444 47 0 1291 0 KEEP - Zdhhc3 YES MNNG_3 chr9 14506924 14506924 G A intronic Piwil4 NA NA ncRNA_intronic piwiL4 NA NA intronic ENSMUSG00000036912 NA NA 9qA2 NA NA chr9 14506924 GGGxAGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162445 0.162467 0.999863 39 1 0 25.004437 0.692308 0.02 -0.113987 4 9 112 242 60 60 0 0 GG 6.016359 20 0 568 0 KEEP - Piwil4 YES MNNG_3 chr9 20311127 20311127 G A intronic Zfp266 NA NA intronic Zfp266 NA NA ncRNA_intronic ENSMUSG00000092119 NA NA 9qA3 NA NA chr9 20311127 CAGxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139819 0.139832 0.999909 42 0 0 21.995442 0.666667 0.02 -0.10522 4 8 113 215 60 60 0 0 GG 7.219525 24 0 679 0 KEEP - Zfp266 YES MNNG_3 chr9 21396590 21396590 G A exonic Yipf2 nonsynonymous SNV NM_138303:c.C104T:p.T35I exonic Yipf2 nonsynonymous SNV uc009olx.1:c.C104T:p.T35I exonic ENSMUSG00000032182 nonsynonymous SNV ENSMUST00000034700:c.C104T:p.T35I 9qA3 NA NA chr9 21396590 GAGxTCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 67 0 0 43.287053 0.566667 0.02 -0.263008 13 17 350 441 60 60 0 0 GG 9.313969 31 0 837 0 KEEP - Yipf2 YES MNNG_3 chr9 21823262 21823262 G A exonic Elavl3 synonymous SNV NM_010487:c.C789T:p.A263A exonic Elavl3 synonymous SNV uc009onn.1:c.C363T:p.A121A exonic ENSMUSG00000003410 synonymous SNV ENSMUST00000003501:c.C789T:p.A263A 9qA3 NA NA chr9 21823262 GATxGCG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 110 0 0 82.460483 0.553571 0.02 1.106307 25 31 703 844 60 60 0 0 GG 12.631089 42 0 1168 0 KEEP - Elavl3 YES MNNG_3 chr9 26817634 26817634 G A intronic Vps26b NA NA intronic Vps26b NA NA intronic ENSMUSG00000031988 NA NA 9qA4 NA NA chr9 26817634 TTGxAAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 76 1 0 32.112692 0.40625 0.02 -0.2806 19 13 533 353 60 60 0 0 GG 10.213189 34 0 940 0 KEEP - Vps26b YES MNNG_3 chr9 30881809 30881809 G A UTR3 Zbtb44 NA NA UTR3 Zbtb44 NA NA UTR3 ENSMUSG00000047412 NA NA 9qA4 NA NA chr9 30881809 GTGxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 97 0 0 39.859655 0.386364 0.02 -0.394544 27 17 739 445 60 60 0 0 GG 12.632243 42 0 1157 0 KEEP + Zbtb44 YES MNNG_3 chr9 35013493 35013493 A C exonic Foxred1 nonsynonymous SNV NM_172291:c.T926G:p.L309R exonic Foxred1 nonsynonymous SNV uc009osv.1:c.T224G:p.L75R exonic ENSMUSG00000039048 nonsynonymous SNV ENSMUST00000135054:c.T125G:p.L42R 9qA4 NA NA chr9 35013493 GGAxGTC A C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 124 0 0 36.244534 0.361702 0.02 -0.411979 30 17 822 415 60 60 0 0 AA 16.243202 54 0 1516 0 KEEP - Foxred1 NO MNNG_3 chr9 35271557 35271557 T A exonic Cdon synonymous SNV NM_021339:c.T1293A:p.P431P exonic Cdon synonymous SNV uc009otd.1:c.T1023A:p.P341P exonic ENSMUSG00000038119 synonymous SNV ENSMUST00000042842:c.T1293A:p.P431P 9qA4 NA NA chr9 35271557 GCCxGTC T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 207 2 0 80.636632 0.426667 0.02 0.939723 43 32 1174 876 60 60 0 0 TT 31.855658 106 0 2874 0 KEEP + Cdon NO MNNG_3 chr9 35941530 35941530 G A downstream Gm3434 NA NA downstream Gm3434 NA NA intergenic "ENSMUSG00000091411(dist=5166),ENSMUSG00000066767(dist=123113)" NA NA 9qA4 "Score=0.936113;Name=No.105351,chr9:35642552" NA chr9 35941530 AAGxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 195 2 12 96.208476 0.5 0.02 0.904735 39 39 1067 1011 60 60 0 0 GG 28.270439 94 0 2570 0 KEEP - Gm3434 YES MNNG_3 chr9 36592093 36592093 G A exonic Ei24 synonymous SNV NM_001199494:c.C687T:p.L229L exonic Ei24 synonymous SNV uc009oua.2:c.C687T:p.L229L exonic ENSMUSG00000062762 synonymous SNV ENSMUST00000115086:c.C633T:p.L211L 9qA4 NA NA chr9 36592093 ATAxAGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 73 0 0 16.202646 0.28 0.02 -0.219234 18 7 512 193 60 60 0 0 GG 10.529264 35 0 1009 0 KEEP - Ei24 YES MNNG_3 chr9 39647817 39647817 G A exonic Olfr971 nonsynonymous SNV NM_146614:c.G797A:p.S266N exonic Olfr971 nonsynonymous SNV uc009oyq.1:c.G797A:p.S266N exonic ENSMUSG00000061686 nonsynonymous SNV ENSMUST00000075467:c.G797A:p.S266N 9qA5.1 NA NA chr9 39647817 TAAxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 196 0 0 64.469806 0.394366 0.02 0.97486 43 28 1190 718 60 60 0 0 GG 30.079196 100 0 2801 0 KEEP + Olfr971 YES MNNG_3 chr9 39813543 39813543 G A downstream Olfr980 NA NA downstream Olfr980 NA NA intronic ENSMUSG00000060254 NA NA 9qA5.1 NA NA chr9 39813543 AATxATT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 71 0 0 41.074513 0.485714 0.02 -0.306786 18 17 493 435 60 60 0 0 GG 9.914408 33 0 919 0 KEEP - Olfr980 YES MNNG_3 chr9 39899952 39899952 G A exonic Olfr983 synonymous SNV NM_146827:c.C598T:p.L200L exonic Olfr983 synonymous SNV uc009ozb.2:c.C598T:p.L200L exonic ENSMUSG00000044205 synonymous SNV ENSMUST00000050996:c.C598T:p.L200L 9qA5.1 NA NA chr9 39899952 CCAxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 157 0 0 75.824252 0.455882 0.02 1.001148 37 31 1035 814 60 60 0 0 GG 20.744252 69 0 1946 0 KEEP - Olfr983 YES MNNG_3 chr9 40115913 40115913 G A exonic Gramd1b nonsynonymous SNV NM_172768:c.C1481T:p.T494I exonic Gramd1b nonsynonymous SNV uc009ozo.1:c.C1037T:p.T346I exonic ENSMUSG00000040111 nonsynonymous SNV ENSMUST00000118159:c.C929T:p.T310I 9qA5.1 NA NA chr9 40115913 TCGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 97 0 0 46.551317 0.422222 0.02 -0.394579 26 19 726 508 60 60 0 0 GG 12.931035 43 0 1185 0 KEEP - Gramd1b YES MNNG_3 chr9 40612007 40612007 G A exonic Hspa8 synonymous SNV NM_031165:c.G1305A:p.Q435Q exonic Hspa8 synonymous SNV uc009ozx.2:c.G1305A:p.Q435Q exonic ENSMUSG00000015656 synonymous SNV ENSMUST00000015800:c.G1305A:p.Q435Q 9qA5.1 "Score=0.993624;Name=No.92108,chr5:5781528" NA chr9 40612007 CCAxCCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 504 2 8 144.152678 0.521739 0.02 2.169714 55 60 1527 1502 60 60 0 0 GG 89.6926 301 1 8368 7 KEEP + Hspa8 YES MNNG_3 chr9 44314820 44314820 G A exonic Bcl9l nonsynonymous SNV NM_030256:c.G1982A:p.G661E exonic Bcl9l nonsynonymous SNV uc009pdu.1:c.G1871A:p.G624E exonic ENSMUSG00000063382 nonsynonymous SNV ENSMUST00000074989:c.G1982A:p.G661E 9qA5.2 NA NA chr9 44314820 AGGxGGA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 105 2 0 54.916298 0.418182 0.02 1.115289 32 23 898 602 60 60 0 0 GG 14.435841 48 0 1322 0 KEEP + Bcl9l YES MNNG_3 chr9 44553646 44553646 C T exonic Arcn1 nonsynonymous SNV NM_145985:c.G1301A:p.R434Q exonic Arcn1 nonsynonymous SNV uc009pei.1:c.G1301A:p.R434Q exonic ENSMUSG00000032096 nonsynonymous SNV ENSMUST00000034607:c.G1301A:p.R434Q 9qA5.2 NA NA chr9 44553646 CTCxGAC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 78 0 0 9.596569 0.151515 0.02 -0.289239 28 5 731 133 60 37 0 0 CC 11.714813 39 0 1023 0 KEEP - Arcn1 YES MNNG_3 chr9 44988841 44988841 T A intronic Tmprss4 NA NA intronic Tmprss4 NA NA intronic ENSMUSG00000032091 NA NA 9qA5.2 NA NA chr9 44988841 TGGxAGG T A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 104 0 0 37.438815 0.416667 0.02 -0.315563 21 15 520 409 60 60 0 0 TT 18.00695 60 0 1549 0 KEEP - Tmprss4 NO MNNG_3 chr9 45140549 45140549 G A splicing Tmprss13(NM_001013373:exon4:c.500-1G>A) NA NA splicing Tmprss13(uc009pfr.1:exon4:c.500-1G>A) NA NA splicing ENSMUSG00000037129(ENSMUST00000034597:exon4:c.500-1G>A) NA NA 9qA5.2 NA NA chr9 45140549 CTAxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.999859 37 0 0 30.980746 0.785714 0.02 -0.122743 3 11 86 289 60 60 0 0 GG 5.413234 18 0 490 0 KEEP + Tmprss13 YES MNNG_3 chr9 45664186 45664186 G A exonic Bace1 nonsynonymous SNV NM_001145947:c.G583A:p.E195K exonic Bace1 nonsynonymous SNV uc009pgi.2:c.G163A:p.E55K exonic ENSMUSG00000032086 nonsynonymous SNV ENSMUST00000034591:c.G583A:p.E195K 9qA5.2 NA NA chr9 45664186 TTGxAGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 191 0 0 71.753297 0.357143 0.02 0.861506 54 30 1492 812 60 60 0 0 GG 25.204645 84 0 2327 0 KEEP + Bace1 YES MNNG_3 chr9 45719265 45719265 A G exonic Pcsk7 synonymous SNV NM_001281934:c.A699G:p.G233G exonic Pcsk7 synonymous SNV uc009pgp.1:c.A699G:p.G233G exonic ENSMUSG00000035382 synonymous SNV ENSMUST00000039059:c.A699G:p.G233G 9qA5.2 NA NA chr9 45719265 AGGxGAA A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 110 0 0 58.746566 0.5 0.02 -0.385822 22 22 602 615 60 60 0 0 AA 14.738943 49 0 1377 0 KEEP + Pcsk7 NO MNNG_3 chr9 46004146 46004146 G A exonic Sik3 nonsynonymous SNV NM_027498:c.G1397A:p.R466K exonic Sik3 nonsynonymous SNV uc009pha.1:c.G1049A:p.R350K exonic ENSMUSG00000034135 nonsynonymous SNV ENSMUST00000078669:c.G1223A:p.R408K 9qA5.2 NA NA chr9 46004146 TGAxGAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161255 0.162467 0.99254 24 0 0 15.564849 0.461538 0.02 -0.113992 7 6 193 166 60 60 0 0 GG 2.707347 9 0 256 0 KEEP + Sik3 YES MNNG_3 chr9 50498030 50498030 G A exonic Dixdc1 nonsynonymous SNV NM_178118:c.C1021T:p.P341S exonic Dixdc1 nonsynonymous SNV uc009pke.1:c.C205T:p.P69S exonic ENSMUSG00000032064 nonsynonymous SNV ENSMUST00000120622:c.C205T:p.P69S 9qA5.3 NA NA chr9 50498030 CCGxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 119 0 0 69.001629 0.491228 0.02 0.991708 29 28 769 728 60 60 0 0 GG 12.015112 40 0 1086 0 KEEP - Dixdc1 YES MNNG_3 chr9 53370332 53370332 G C exonic Npat nonsynonymous SNV NM_001081152:c.G1318C:p.A440P exonic Npat nonsynonymous SNV uc009pmf.1:c.G1318C:p.A440P exonic ENSMUSG00000033054 nonsynonymous SNV ENSMUST00000035850:c.G1318C:p.A440P 9qA5.3 NA NA chr9 53370332 TGTxCCC G C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 92 0 0 34.581895 0.481481 0.02 -0.236721 14 13 382 365 60 60 0 0 GG 15.033656 50 0 1410 0 KEEP + Npat NO MNNG_3 chr9 54229827 54229827 G A exonic Dmxl2 synonymous SNV NM_172771:c.C7629T:p.V2543V exonic Dmxl2 synonymous SNV uc009pqz.2:c.C4536T:p.V1512V exonic ENSMUSG00000041268 synonymous SNV ENSMUST00000118163:c.C7629T:p.V2543V 9qA5.3 NA NA chr9 54229827 AATxACA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38736 0.387407 0.999879 51 0 0 19.369165 0.4 0.02 -0.175374 12 8 340 214 60 60 0 0 GG 6.618579 22 0 637 0 KEEP - Dmxl2 YES MNNG_3 chr9 54387364 54387364 G A exonic Sh2d7 synonymous SNV NM_173778:c.G90A:p.R30R exonic Sh2d7 synonymous SNV uc009prd.1:c.G90A:p.R30R exonic ENSMUSG00000046460 synonymous SNV ENSMUST00000060242:c.G90A:p.R30R 9qA5.3 NA NA chr9 54387364 CCGxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 159 0 0 62.571141 0.448276 0.02 1.186751 32 26 863 675 60 60 0 0 GG 25.219091 84 0 2221 0 KEEP + Sh2d7 YES MNNG_3 chr9 54391049 54391049 G A intronic Sh2d7 NA NA intronic Sh2d7 NA NA intronic ENSMUSG00000046460 NA NA 9qA5.3 NA NA chr9 54391049 TGGxTCT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 105 0 0 65.191794 0.555556 0.02 -0.39455 20 25 549 667 60 60 0 0 GG 17.399398 58 0 1602 0 KEEP + Sh2d7 YES MNNG_3 chr9 55071103 55071103 G A exonic Fbxo22 nonsynonymous SNV NM_028049:c.G848A:p.R283Q exonic Fbxo22 nonsynonymous SNV uc009pse.1:c.G539A:p.R180Q exonic ENSMUSG00000032309 nonsynonymous SNV ENSMUST00000146201:c.G539A:p.R180Q 9qB NA NA chr9 55071103 ACCxAAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 212 3 0 79.486136 0.402439 0.02 0.712555 49 33 1108 877 60 60 0 0 GG 32.423752 108 0 2537 0 KEEP + Fbxo22 YES MNNG_3 chr9 55889946 55889946 G A exonic Rcn2 nonsynonymous SNV NM_001278274:c.G88A:p.E30K exonic Rcn2 nonsynonymous SNV uc009psr.1:c.G193A:p.E65K exonic ENSMUSG00000032320 nonsynonymous SNV ENSMUST00000114276:c.G88A:p.E30K 9qB NA NA chr9 55889946 GAGxAAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.999859 51 0 0 30.796453 0.5 0.02 -0.210443 12 12 336 323 60 60 0 0 GG 5.413667 18 0 498 0 KEEP + Rcn2 YES MNNG_3 chr9 56740185 56740185 G A exonic Cspg4 nonsynonymous SNV NM_139001:c.G4528A:p.G1510S exonic Cspg4 nonsynonymous SNV uc009ptn.1:c.G3715A:p.G1239S exonic ENSMUSG00000032911 nonsynonymous SNV ENSMUST00000035661:c.G4528A:p.G1510S 9qB NA NA chr9 56740185 TCGxGCC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 179 0 0 106.305539 0.525641 0.02 0.91345 37 41 1036 1102 60 60 0 0 GG 22.478481 75 0 2044 0 KEEP + Cspg4 YES MNNG_3 chr9 57106137 57106137 G A exonic 1700017B05Rik nonsynonymous SNV NM_028820:c.C760T:p.P254S exonic 1700017B05Rik nonsynonymous SNV uc009puq.2:c.C760T:p.P254S exonic ENSMUSG00000032300 nonsynonymous SNV ENSMUST00000034846:c.C760T:p.P254S 9qB NA NA chr9 57106137 GGGxCTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 139 0 0 75.672221 0.444444 0.02 0.86879 40 32 1096 819 60 60 0 0 GG 17.741609 59 0 1604 0 KEEP - 1700017B05Rik YES MNNG_3 chr9 57387113 57387113 G A intronic Fam219b NA NA intronic 2310046O06Rik NA NA intronic ENSMUSG00000032305 NA NA 9qB NA NA chr9 57387113 AGAxCGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 68 0 0 61.303013 0.621622 0.02 -0.332926 14 23 390 610 60 60 0 0 GG 8.420794 28 0 773 0 KEEP + Fam219b YES MNNG_3 chr9 57769600 57769600 G A intronic Ubl7 NA NA intronic Ubl7 NA NA intronic ENSMUSG00000055720 NA NA 9qB NA NA chr9 57769600 AGGxATT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 103 0 0 67.663623 0.52 0.02 -0.43838 24 26 671 703 60 60 0 0 GG 14.437711 48 0 1349 0 KEEP + Ubl7 YES MNNG_3 chr9 58706888 58706888 T C exonic Hcn4 synonymous SNV NM_001081192:c.T2031C:p.T677T exonic Hcn4 synonymous SNV uc009pxi.1:c.T2031C:p.T677T exonic ENSMUSG00000032338 synonymous SNV ENSMUST00000034889:c.T2031C:p.T677T 9qB NA NA chr9 58706888 TACxTAT T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 76 0 0 52.66955 0.612903 0.02 -0.271798 12 19 330 526 60 60 0 0 TT 11.129207 37 0 1032 0 KEEP + Hcn4 NO MNNG_3 chr9 64001463 64001463 A G intronic Zwilch NA NA intronic Zwilch NA NA intronic ENSMUSG00000032400 NA NA 9qC NA NA chr9 64001463 GAAxAAG A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 42 0 0 25.187959 0.529412 0.02 -0.149082 8 9 222 260 60 60 0 0 AA 5.413727 18 0 496 0 KEEP - Zwilch NO MNNG_3 chr9 65722737 65722737 G A exonic Trip4 synonymous SNV NM_001170907:c.C519T:p.C173C exonic Trip4 synonymous SNV uc009qdz.2:c.C519T:p.C173C exonic ENSMUSG00000032386 synonymous SNV ENSMUST00000117083:c.C519T:p.C173C 9qC NA NA chr9 65722737 CAGxCAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 261 0 0 136.513583 0.568421 0.02 0.755785 41 54 1132 1390 60 60 0 0 GG 39.673449 132 0 3597 0 KEEP - Trip4 YES MNNG_3 chr9 66219793 66219793 G A exonic Herc1 nonsynonymous SNV NM_145617:c.G175A:p.G59R exonic Herc1 nonsynonymous SNV uc009qeo.1:c.G175A:p.G59R exonic ENSMUSG00000038664 nonsynonymous SNV ENSMUST00000042824:c.G175A:p.G59R 9qC NA NA chr9 66219793 AAAxGAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 140 0 0 84.307549 0.452055 0.02 0.94848 40 33 1127 904 60 60 0 0 GG 15.322113 51 0 1411 0 KEEP + Herc1 YES MNNG_3 chr9 70226065 70226065 G A exonic Myo1e nonsynonymous SNV NM_181072:c.G2675A:p.G892E exonic Myo1e nonsynonymous SNV uc009qnx.1:c.G2675A:p.G892E exonic ENSMUSG00000032220 nonsynonymous SNV ENSMUST00000034745:c.G2675A:p.G892E 9qD NA NA chr9 70226065 CAGxGGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 115 0 0 40.291845 0.346939 0.02 -0.428901 32 17 865 459 60 60 0 0 GG 15.940736 53 0 1469 0 KEEP + Myo1e YES MNNG_3 chr9 7558501 7558501 G A UTR5 Mmp8 NA NA UTR5 Mmp8 NA NA UTR5 ENSMUSG00000005800 NA NA 9qA1 NA NA chr9 7558501 AGAxGAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 78 0 0 33.318998 0.378378 0.02 -0.324424 23 14 641 373 60 60 0 0 GG 10.528155 35 0 993 0 KEEP + Mmp8 YES MNNG_3 chr9 77038563 77038563 G A intronic Mlip NA NA intronic 2310046A06Rik NA NA intronic ENSMUSG00000032355 NA NA 9qD NA NA chr9 77038563 ACAxTTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 41 0 0 18.74282 0.444444 0.02 -0.157806 10 8 275 203 60 60 0 0 GG 6.01457 20 0 538 0 KEEP - Mlip YES MNNG_3 chr9 79529288 79529288 G A exonic Col12a1 synonymous SNV NM_007730:c.C3351T:p.Y1117Y exonic Col12a1 synonymous SNV uc009qut.1:c.C3351T:p.Y1117Y exonic ENSMUSG00000032332 synonymous SNV ENSMUST00000071750:c.C3351T:p.Y1117Y 9qE1 NA NA chr9 79529288 TTTxTAA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 145 0 0 61.582218 0.428571 0.02 0.947711 36 27 994 674 60 60 0 0 GG 20.147079 67 0 1860 0 KEEP - Col12a1 YES MNNG_3 chr9 81571260 81571260 G T intergenic "D430036J16Rik(dist=32497),Mei4(dist=186091)" NA NA intergenic "AK052495(dist=32497),Mei4(dist=186091)" NA NA ncRNA_exonic ENSMUSG00000079225 NA NA 9qE1 "Score=0.971078;Name=No.74959,chr1_random:168279,No.105685,chrUn_random:279148" NA chr9 81571260 CAAxAAA G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 55 0 9 10.821193 0.357143 0.02 -0.12274 9 5 250 124 37 41 0 0 GG 9.617999 32 0 889 0 KEEP NA D430036J16Rik NO MNNG_3 chr9 85220194 85220194 T C exonic Fam46a nonsynonymous SNV NM_001160378:c.A239G:p.D80G exonic Fam46a nonsynonymous SNV uc009qwt.2:c.A182G:p.D61G exonic ENSMUSG00000032265 nonsynonymous SNV ENSMUST00000034802:c.A239G:p.D80G 9qE3.1 NA NA chr9 85220194 CCGxCCA T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 293 2 0 118.87179 0.505618 0.02 0.914891 44 45 1166 1242 60 60 0 0 TT 49.832403 166 0 4424 0 KEEP - Fam46a NO MNNG_3 chr9 90113695 90113695 G A exonic Tbc1d2b synonymous SNV NM_194334:c.C2079T:p.Y693Y exonic Tbc1d2b synonymous SNV uc009rac.1:c.C2079T:p.Y693Y exonic ENSMUSG00000037410 synonymous SNV ENSMUST00000041767:c.C2079T:p.Y693Y 9qE3.1 NA NA chr9 90113695 GAAxTAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 124 0 0 61.07345 0.454545 0.02 1.115441 30 25 814 656 60 60 0 0 GG 18.348022 61 0 1703 0 KEEP - Tbc1d2b YES MNNG_3 chr9 95384666 95384666 G A exonic U2surp synonymous SNV NM_026476:c.C1401T:p.Y467Y exonic 2610101N10Rik synonymous SNV uc009rba.2:c.C1401T:p.Y467Y exonic ENSMUSG00000032407 synonymous SNV ENSMUST00000078374:c.C1401T:p.Y467Y 9qE3.3 NA NA chr9 95384666 AAGxTAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 162 0 0 76.995414 0.492308 0.02 0.921591 33 32 877 813 60 60 0 0 GG 20.148586 67 0 1831 0 KEEP - U2surp YES MNNG_3 chr9 96445999 96445999 G A intronic Rasa2 NA NA intronic Rasa2 NA NA intronic ENSMUSG00000032413 NA NA 9qE3.3 NA NA chr9 96445999 TGAxTTA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.609555 0.612407 0.995343 43 0 0 40.654134 0.625 0.02 -0.236739 9 15 248 404 60 60 0 0 GG 4.211557 14 0 400 0 KEEP - Rasa2 YES MNNG_3 chr9 98487437 98487437 G A intronic Copb2 NA NA intronic Copb2 NA NA intronic ENSMUSG00000032458 NA NA 9qE3.3 NA NA chr9 98487437 ACAxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322777 0.322807 0.999909 47 0 0 26.196827 0.555556 0.02 -0.157825 8 10 221 268 60 60 0 0 GG 7.216426 24 0 676 0 KEEP + Copb2 YES MNNG_3 chr9 98941478 98941478 G A intronic Pik3cb NA NA intronic Pik3cb NA NA intronic ENSMUSG00000032462 NA NA 9qE3.3 NA NA chr9 98941478 TGGxTTG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717215 0.717315 0.99986 59 0 0 39.922761 0.533333 0.02 -0.271787 14 16 387 413 60 60 0 0 GG 5.713941 19 0 514 0 KEEP - Pik3cb YES MNNG_3 chrM 12959 12959 C T intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic "BC071253,Cytb" NA NA exonic ENSMUSG00000064367 unknown UNKNOWN NA NA NA chrM 12959 CGCxTGA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1281 8 0 37.356983 0.084942 0.02 5.715547 237 22 6692 595 60 60 0 0 CC 298.371417 992 0 27956 0 KEEP NA NONE YES MNNG_3 chrX 11626097 11626097 G A intronic Bcor NA NA intronic Bcor NA NA intronic ENSMUSG00000040363 NA NA XqA1.1 NA NA chrX 11626097 CAGxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 168 1 0 66.084983 0.421875 0.02 1.037198 37 27 986 721 60 60 0 0 GG 24.242399 81 0 2174 0 KEEP - Bcor YES MNNG_3 chrX 12738838 12738838 G A splicing Usp9x(NM_009481:exon41:c.7061+1G>A) NA NA splicing Usp9x(uc009sri.1:exon41:c.7061+1G>A) NA NA splicing "ENSMUSG00000031010(ENSMUST00000089302:exon41:c.7061+1G>A,ENSMUST00000115466:exon41:c.7061+1G>A,ENSMUST00000133997:exon3:c.386+1G>A)" NA NA XqA1.1 NA NA chrX 12738838 CAGxTGG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 129 0 0 30.294295 0.325581 0.02 -0.376977 29 14 785 354 60 60 0 0 GG 20.43542 68 0 1832 0 KEEP + Usp9x YES MNNG_3 chrX 130615879 130615879 G A intronic Cstf2 NA NA intronic Cstf2 NA NA intronic ENSMUSG00000031256 NA NA XqE3 NA NA chrX 130615879 CCGxGCA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 36 0 0 6.473512 0.214286 0.02 -0.122765 11 3 307 82 60 60 0 0 GG 4.81278 16 0 448 0 KEEP + Cstf2 YES MNNG_3 chrX 136967138 136967138 C T intergenic "Frmpd3(dist=38079),Prps1(dist=24004)" NA NA intergenic "Frmpd3(dist=38059),Prps1(dist=24004)" NA NA intergenic "ENSMUSG00000042425(dist=38059),ENSMUSG00000082031(dist=12955)" NA NA XqF1 NA NA chrX 136967138 TTCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 88 0 0 73.843846 0.627907 0.02 -0.385811 16 27 445 733 60 60 0 0 CC 11.124927 37 0 1023 0 KEEP NA Frmpd3 YES MNNG_3 chrX 148006900 148006900 C T intronic Phf8 NA NA intronic Phf8 NA NA intronic ENSMUSG00000041229 NA NA XqF3 NA NA chrX 148006900 ATAxTCT C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 88 0 0 44.367827 0.529412 0.02 -0.306839 16 18 441 460 60 60 0 0 CC 11.420375 38 0 1043 0 KEEP + Phf8 YES MNNG_3 chrX 148328464 148328464 C T exonic Huwe1 synonymous SNV NM_021523:c.C5619T:p.V1873V exonic Huwe1 synonymous SNV uc009upr.1:c.C627T:p.V209V exonic ENSMUSG00000025261 synonymous SNV ENSMUST00000112622:c.C5619T:p.V1873V XqF3 NA NA chrX 148328464 AGTxCTA C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 0.999999 61 0 0 26.764777 0.588235 0.02 -0.149064 7 10 197 270 60 60 0 0 CC 10.527844 35 0 985 0 KEEP + Huwe1 YES MNNG_3 chrX 156570196 156570196 C T intronic Pdha1 NA NA intronic Pdha1 NA NA intronic ENSMUSG00000031299 NA NA XqF4 NA NA chrX 156570196 GCCxCCC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38494 0.387407 0.993634 35 0 0 24.845788 0.5 0.02 -0.175332 10 10 270 261 60 60 0 0 CC 3.609397 12 0 334 0 KEEP - Pdha1 YES MNNG_3 chrX 157659678 157659678 C T exonic Scml2 nonsynonymous SNV NM_133194:c.C1144T:p.P382S exonic Scml2 nonsynonymous SNV uc009utw.1:c.C1141T:p.P381S exonic ENSMUSG00000000037 nonsynonymous SNV ENSMUST00000019101:c.C1144T:p.P382S XqF4 NA NA chrX 157659678 GCCxCAG C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 331 0 89 88.73744 0.53125 0.02 1.0389 30 34 783 916 36 36 0 0 CC 57.401122 191 0 5311 0 KEEP + Scml2 YES MNNG_3 chrX 163645918 163645918 C T exonic Tmsb4x synonymous SNV NM_021278:c.G51A:p.K17K exonic Tmsb4x synonymous SNV uc009uwx.1:c.G51A:p.K17K exonic ENSMUSG00000049775 synonymous SNV ENSMUST00000112172:c.G51A:p.K17K XqF5 NA NA chrX 163645918 CAAxTTC C T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 93 0 0 36.617544 0.5 0.02 -0.263018 15 15 419 385 60 60 0 0 CC 12.331094 41 0 1142 0 KEEP - Tmsb4x YES MNNG_3 chrX 166414822 166414822 T C ncRNA_intronic G530011O06Rik NA NA ncRNA_intronic "Fxy,G530011O06Rik" NA NA ncRNA_intronic ENSMUSG00000072844 NA NA XqF5 NA NA chrX 166414822 AAAxTCA T C OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 100 0 0 32.015412 0.40625 0.02 -0.280517 19 13 480 352 60 70 0 0 TT 17.743169 59 0 1588 0 KEEP - G530011O06Rik NO MNNG_3 chrX 20247945 20247945 G A exonic Uba1 nonsynonymous SNV NM_001136085:c.G757A:p.V253I exonic Uba1 nonsynonymous SNV uc009stl.1:c.G757A:p.V253I exonic ENSMUSG00000001924 nonsynonymous SNV ENSMUST00000001989:c.G757A:p.V253I XqA1.3 NA NA chrX 20247945 GAAxTAC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 85 0 0 46.063944 0.463415 0.02 -0.35943 22 19 590 493 60 60 0 0 GG 11.127138 37 0 1017 0 KEEP + Uba1 YES MNNG_3 chrX 20430664 20430664 T G intronic Araf NA NA intronic Araf NA NA intronic ENSMUSG00000001127 NA NA XqA1.3 NA NA chrX 20430664 GACxTCT T G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 99 0 0 24.102739 0.34375 0.02 -0.289297 21 11 571 278 60 60 0 0 TT 15.031374 50 0 1378 0 KEEP + Araf NO MNNG_3 chrX 23901144 23901144 A G intergenic "Gm4907(dist=416468),Gm5934(dist=150290)" NA NA intergenic "Gm4907(dist=416468),Gm5934(dist=150290)" NA NA ncRNA_exonic ENSMUSG00000083475 NA NA XqA2 "Score=0.967313;Name=No.107961,chrX:23816056" NA chrX 23901144 GGAxTGC A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 498 2 0 137.817203 0.4 0.02 2.305454 81 54 2107 1515 60 60 0 0 AA 76.695207 255 0 7001 0 KEEP NA Gm4907 NO MNNG_3 chrX 30824032 30824032 G T downstream Gm21637 NA NA downstream 4930408F14Rik NA NA downstream ENSMUSG00000078331 NA NA XqA3.1 "Score=0.994515;Name=No.112310,chrX:31418449" NA chrX 30824032 ACTxTAG G T OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 459 2 23 79.96658 0.211429 0.02 3.453386 138 37 3763 1015 60 46 0 0 GG 69.776209 232 0 6364 0 KEEP - Gm21637 NO MNNG_3 chrX 38646604 38646604 A G intergenic "Cypt14(dist=1429823),Gria3(dist=107874)" NA NA intergenic "Cypt14(dist=1429823),Gria3(dist=107427)" NA NA downstream ENSMUSG00000081880 NA NA XqA3.3 "Score=0.937075;Name=No.105006,chr8:78235369" NA chrX 38646604 TCAxAAG A G OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 125 2 4 8.05937 0.111111 0.02 -0.394596 32 4 873 116 60 29 0 0 AA 15.305636 51 0 1400 0 KEEP NA Cypt14 NO MNNG_3 chrX 3995465 3995465 G A exonic Gm10922 synonymous SNV NM_001085554:c.C24T:p.V8V exonic Gm10922 synonymous SNV uc009skp.1:c.C24T:p.V8V exonic ENSMUSG00000078216 synonymous SNV ENSMUST00000105014:c.C24T:p.V8V XqA1.1 "Score=0.996537;Name=No.106996,chrX:30241047" NA chrX 3995465 CAAxACC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 795 9 309 120.012827 0.440367 0.02 2.336775 61 48 1732 1296 23 25 0 0 GG 137.140415 456 0 12905 0 KEEP - Gm10922 YES MNNG_3 chrX 42445531 42445531 G A exonic 1110059M19Rik nonsynonymous SNV NM_026841:c.G565A:p.A189T exonic 1110059M19Rik nonsynonymous SNV uc009tbi.1:c.G565A:p.A189T exonic ENSMUSG00000037086 nonsynonymous SNV ENSMUST00000040002:c.G565A:p.A189T XqA4 NA NA chrX 42445531 AATxCTA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 133 0 0 77.109363 0.516129 0.02 0.860037 30 32 820 805 60 60 0 0 GG 17.739684 59 0 1656 0 KEEP + 1110059M19Rik YES MNNG_3 chrX 45488928 45488928 G A exonic Xpnpep2 nonsynonymous SNV NM_133213:c.G1847A:p.R616H exonic Xpnpep2 nonsynonymous SNV uc009tbv.1:c.G1847A:p.R616H exonic ENSMUSG00000037005 nonsynonymous SNV ENSMUST00000077775:c.G1847A:p.R616H XqA4 NA NA chrX 45488928 ACCxCTA G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 139 0 0 55.374606 0.442308 0.02 1.141776 29 23 677 599 60 60 0 0 GG 19.76925 66 0 1567 0 KEEP + Xpnpep2 YES MNNG_3 chrX 7313862 7313862 G A exonic Ccdc120 nonsynonymous SNV NM_207202:c.C566T:p.A189V exonic Ccdc120 nonsynonymous SNV uc009smf.1:c.C566T:p.A189V exonic ENSMUSG00000031150 nonsynonymous SNV ENSMUST00000033490:c.C566T:p.A189V XqA1.1 NA NA chrX 7313862 TGGxCAT G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 108 0 0 55.253414 0.396552 0.02 1.080074 35 23 958 612 60 60 0 0 GG 12.311867 41 0 1098 0 KEEP - Ccdc120 YES MNNG_3 chrX 7345108 7345108 G A exonic Tfe3 synonymous SNV NM_001105197:c.G552A:p.L184L exonic "Tcfe3,Tfe3" synonymous SNV uc009smg.2:c.G552A:p.L184L exonic ENSMUSG00000000134 synonymous SNV ENSMUST00000077680:c.G867A:p.L289L XqA1.1 NA NA chrX 7345108 GCTxCAG G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 115 0 0 91.426456 0.62069 0.02 0.982809 22 36 611 910 60 60 0 0 GG 13.534816 45 0 1244 0 KEEP + Tfe3 YES MNNG_3 chrX 83644326 83644326 G A intergenic "Gm41(dist=43993),Il1rapl1(dist=348255)" NA NA intergenic "Gm41(dist=43993),Il1rapl1(dist=348255)" NA NA ncRNA_exonic ENSMUSG00000082450 NA NA XqC1 NA NA chrX 83644326 TCGxCTC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 169 2 0 100.249912 0.5125 0.02 0.896174 39 41 1071 1048 60 60 0 0 GG 21.029978 70 0 1886 0 KEEP NA Gm41 YES MNNG_3 chrX 8657191 8657191 G A intergenic "Gm5635(dist=16243),4930402K13Rik(dist=24497)" NA NA intergenic "Gm5635(dist=16243),Lancl3(dist=119908)" NA NA ncRNA_exonic ENSMUSG00000083123 NA NA XqA1.1 "Score=0.978582;Name=No.107551,chrX:8624781" NA chrX 8657191 CGAxTGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 46 0 1 33.207167 0.541667 0.02 -0.21043 11 13 310 342 60 60 0 0 GG 5.715305 19 0 537 0 KEEP NA Gm5635 YES MNNG_3 chrX 93355625 93355625 G A intronic Msn NA NA intronic Msn NA NA intronic ENSMUSG00000031207 NA NA XqC3 NA NA chrX 93355625 CGAxTGC G A OtA1980_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58286 0.58293 0.999879 48 0 0 22.560341 0.4 0.02 -0.227928 15 10 402 251 60 60 0 0 GG 6.616026 22 0 591 0 KEEP + Msn YES MNNG_4 chr10 105266908 105266908 T C exonic Mettl25 nonsynonymous SNV NM_207522:c.A512G:p.K171R exonic BC067068 nonsynonymous SNV uc007gyo.2:c.A512G:p.K171R exonic ENSMUSG00000036009 nonsynonymous SNV ENSMUST00000046638:c.A512G:p.K171R 10qD1 NA NA chr10 105266908 TGCxTTA T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 94 0 0 16.80257 0.304348 0.02 -0.201673 16 7 433 196 60 60 0 0 TT 15.339319 51 0 1418 0 KEEP - Mettl25 NO MNNG_4 chr10 105269973 105269973 A T exonic Mettl25 nonsynonymous SNV NM_207522:c.T343A:p.L115M exonic BC067068 nonsynonymous SNV uc007gyo.2:c.T343A:p.L115M exonic ENSMUSG00000036009 nonsynonymous SNV ENSMUST00000046638:c.T343A:p.L115M 10qD1 NA NA chr10 105269973 CCAxGTT A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 62 0 0 15.502009 0.304348 0.02 -0.201652 16 7 431 183 60 60 0 0 AA 9.323562 31 0 867 0 KEEP - Mettl25 NO MNNG_4 chr10 106931672 106931672 C T exonic Myf6 nonsynonymous SNV NM_008657:c.G89A:p.G30D exonic Myf6 nonsynonymous SNV uc007gza.1:c.G89A:p.G30D exonic ENSMUSG00000035923 nonsynonymous SNV ENSMUST00000044210:c.G89A:p.G30D 10qD1 NA NA chr10 106931672 GAGxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 84 0 0 9.556184 0.2 0.02 -0.219194 20 5 551 126 60 60 0 0 CC 13.535453 45 0 1256 0 KEEP - Myf6 YES MNNG_4 chr10 109207235 109207235 G A intronic Nav3 NA NA intronic Nav3 NA NA intronic ENSMUSG00000020181 NA NA 10qD1 NA NA chr10 109207235 AGAxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076759 0.077336 0.99254 20 0 0 12.897912 0.555556 0.02 -0.078912 4 5 112 132 60 60 0 0 GG 2.707474 9 0 258 0 KEEP - Nav3 YES MNNG_4 chr10 111708795 111708795 C T exonic Kcnc2 nonsynonymous SNV NM_001025581:c.C34T:p.L12F exonic Kcnc2 nonsynonymous SNV uc007hao.1:c.C34T:p.L12F exonic ENSMUSG00000035681 nonsynonymous SNV ENSMUST00000092175:c.C34T:p.L12F 10qD2 NA NA chr10 111708795 ATCxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 0.999999 63 0 0 8.681709 0.235294 0.02 -0.149063 13 4 357 108 60 60 0 0 CC 10.520767 35 0 971 0 KEEP + Kcnc2 YES MNNG_4 chr10 115714508 115714508 G A intergenic "Ptprr(dist=2523),Ptprb(dist=23922)" NA NA exonic Ptprb synonymous SNV uc007hbu.1:c.G336A:p.K112K exonic ENSMUSG00000020154 synonymous SNV ENSMUST00000020363:c.G219A:p.K73K 10qD2 NA NA chr10 115714508 CAAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 68 0 0 50.739942 0.655172 0.02 -0.254256 10 19 278 498 60 60 0 0 GG 9.626265 32 0 911 0 KEEP NA Ptprr YES MNNG_4 chr10 115756591 115756591 G A exonic Ptprb synonymous SNV NM_029928:c.G1332A:p.Q444Q exonic Ptprb synonymous SNV uc007hbv.2:c.G1332A:p.Q444Q exonic ENSMUSG00000020154 synonymous SNV ENSMUST00000092167:c.G1332A:p.Q444Q 10qD2 NA NA chr10 115756591 ACAxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 66 0 0 41.58547 0.666667 0.02 -0.219131 8 16 214 406 60 60 0 0 GG 9.024316 30 0 850 0 KEEP + Ptprb YES MNNG_4 chr10 120832157 120832157 G A exonic Gns nonsynonymous SNV NM_029364:c.G1610A:p.R537K exonic Gns nonsynonymous SNV uc007hfr.1:c.G536A:p.R179K exonic ENSMUSG00000034707 nonsynonymous SNV ENSMUST00000040344:c.G1610A:p.R537K 10qD2 NA NA chr10 120832157 CGAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 232 0 0 71.025132 0.375 0.02 0.887197 50 30 1369 797 60 60 0 0 GG 35.795254 119 0 3375 0 KEEP + Gns YES MNNG_4 chr10 122446918 122446918 G A intronic Mon2 NA NA intronic Mon2 NA NA intronic ENSMUSG00000034602 NA NA 10qD2 NA NA chr10 122446918 GGAxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 106 0 0 23.039708 0.3125 0.02 -0.280598 22 10 613 269 60 60 0 0 GG 15.639084 52 0 1485 0 KEEP - Mon2 YES MNNG_4 chr10 12368992 12368992 G A exonic Utrn synonymous SNV NM_011682:c.C6544T:p.L2182L exonic Utrn synonymous SNV uc007ejw.1:c.C6544T:p.L2182L exonic ENSMUSG00000019820 synonymous SNV ENSMUST00000076817:c.C6544T:p.L2182L 10qA1 NA NA chr10 12368992 TCAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 95 0 0 25.953189 0.323529 0.02 -0.29813 23 11 634 300 60 60 0 0 GG 13.536589 45 0 1275 0 KEEP - Utrn YES MNNG_4 chr10 126536499 126536499 G A exonic Os9 synonymous SNV NM_001171026:c.C1002T:p.N334N exonic Os9 synonymous SNV uc007hhz.2:c.C1002T:p.N334N exonic ENSMUSG00000040462 synonymous SNV ENSMUST00000080975:c.C1002T:p.N334N 10qD3 NA NA chr10 126536499 GTGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 152 0 0 48.750723 0.333333 0.02 0.92142 44 22 1168 565 60 60 0 0 GG 20.089861 67 0 1828 0 KEEP - Os9 YES MNNG_4 chr10 126536774 126536774 G A intronic Os9 NA NA intronic Os9 NA NA intronic ENSMUSG00000040462 NA NA 10qD3 NA NA chr10 126536774 ACGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 288 0 0 67.530078 0.291262 0.02 2.282791 73 30 2021 802 60 60 0 0 GG 42.706867 142 0 4024 0 KEEP - Os9 YES MNNG_4 chr10 126940151 126940151 G A exonic Stac3 synonymous SNV NM_177707:c.G72A:p.Q24Q exonic Stac3 synonymous SNV uc007hjr.1:c.G72A:p.Q24Q exonic ENSMUSG00000040287 synonymous SNV ENSMUST00000035839:c.G72A:p.Q24Q 10qD3 NA NA chr10 126940151 ACAxCGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 75 2 0 51.043557 0.655172 0.02 -0.25423 10 19 265 501 60 60 0 0 GG 10.227338 34 0 959 0 KEEP + Stac3 YES MNNG_4 chr10 126956504 126956504 G A exonic Shmt2 nonsynonymous SNV NM_001252316:c.C649T:p.L217F exonic Shmt2 nonsynonymous SNV uc007hju.1:c.C658T:p.L220F exonic ENSMUSG00000025403 nonsynonymous SNV ENSMUST00000026470:c.C658T:p.L220F 10qD3 NA NA chr10 126956504 TGAxCCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.99986 30 0 0 15.569525 0.666667 0.02 -0.078898 3 6 85 152 60 60 0 0 GG 5.679478 19 0 496 0 KEEP - Shmt2 YES MNNG_4 chr10 127645646 127645646 G A splicing Gls2(NM_001033264:exon16:c.1512-1G>A) NA NA splicing "Gls2(uc007hlo.2:exon16:c.1512-1G>A,uc011xqb.1:exon15:c.945-1G>A,uc007hlp.2:exon9:c.675-1G>A)" NA NA splicing "ENSMUSG00000044005(ENSMUST00000044776:exon16:c.1512-1G>A,ENSMUST00000143827:exon15:c.1382-1G>A,ENSMUST00000159440:exon16:c.1541-1G>A,ENSMUST00000134104:exon15:c.1410-1G>A,ENSMUST00000132441:exon4:c.232-1G>A)" NA NA 10qD3 NA NA chr10 127645646 TCAxGTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 217 2 0 41.541227 0.276923 0.02 1.018941 47 18 1279 496 60 60 0 0 GG 35.195312 117 0 3331 0 KEEP + Gls2 YES MNNG_4 chr10 128151357 128151357 G A exonic Pmel synonymous SNV NM_021882:c.G204A:p.R68R exonic Pmel synonymous SNV uc007hob.1:c.G204A:p.R68R exonic ENSMUSG00000025359 synonymous SNV ENSMUST00000054125:c.G204A:p.R68R 10qD3 NA NA chr10 128151357 GAGxGTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 63 0 0 48.620918 0.72 0.02 -0.219044 7 18 194 465 60 60 0 0 GG 8.422619 28 0 789 0 KEEP + Pmel YES MNNG_4 chr10 128244334 128244334 G A exonic Dnajc14 synonymous SNV NM_028873:c.G1068A:p.R356R exonic Dnajc14 synonymous SNV uc007hok.1:c.G1068A:p.R356R exonic ENSMUSG00000025354 synonymous SNV ENSMUST00000026410:c.G1068A:p.R356R 10qD3 NA NA chr10 128244334 CCGxTTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 155 1 0 48.076705 0.314286 0.02 0.869228 48 22 1269 565 60 60 0 0 GG 19.16265 64 0 1688 0 KEEP + Dnajc14 YES MNNG_4 chr10 128322561 128322561 G A intronic Gdf11 NA NA intronic Gdf11 NA NA intronic ENSMUSG00000025352 NA NA 10qD3 NA NA chr10 128322561 AGGxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 66 0 0 30.29423 0.521739 0.02 -0.201502 11 12 290 315 60 60 0 0 GG 9.606725 32 0 847 0 KEEP - Gdf11 YES MNNG_4 chr10 128698822 128698822 G T exonic Olfr776 synonymous SNV NM_207559:c.G804T:p.L268L exonic Olfr776 synonymous SNV uc007hpr.1:c.G804T:p.L268L exonic ENSMUSG00000059402 synonymous SNV ENSMUST00000073704:c.G804T:p.L268L 10qD3 NA NA chr10 128698822 ACTxACC G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 131 1 10 33.283642 0.285714 0.02 1.009052 40 16 1104 402 57 57 0 0 GG 18.042686 60 0 1710 0 KEEP + Olfr776 NO MNNG_4 chr10 13244778 13244778 G A intronic Pex3 NA NA intronic Pex3 NA NA intronic ENSMUSG00000019809 NA NA 10qA2 NA NA chr10 13244778 CTGxTAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 85 0 0 28.025584 0.578947 0.02 -0.166569 8 11 216 284 60 60 0 0 GG 12.330894 41 0 1126 0 KEEP - Pex3 YES MNNG_4 chr10 13282502 13282502 G A exonic Adat2 synonymous SNV NM_025748:c.G519A:p.Q173Q exonic Adat2 synonymous SNV uc007ela.2:c.G519A:p.Q173Q exonic ENSMUSG00000019808 synonymous SNV ENSMUST00000019944:c.G519A:p.Q173Q 10qA2 NA NA chr10 13282502 ACAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 117 2 0 96.132879 0.660377 0.02 1.132638 18 35 497 942 60 60 0 0 GG 14.740243 49 0 1396 0 KEEP + Adat2 YES MNNG_4 chr10 13850602 13850602 G A exonic Hivep2 nonsynonymous SNV NM_010437:c.G3137A:p.G1046E exonic Hivep2 nonsynonymous SNV uc007eli.1:c.G3137A:p.G1046E exonic ENSMUSG00000015501 nonsynonymous SNV ENSMUST00000015645:c.G3137A:p.G1046E 10qA2 NA NA chr10 13850602 ATGxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 102 0 0 37.512869 0.355556 0.02 -0.394562 29 16 796 426 60 60 0 0 GG 13.199677 47 1 1290 8 KEEP + Hivep2 YES MNNG_4 chr10 19831609 19831609 G A intronic Map3k5 NA NA intronic Map3k5 NA NA intronic ENSMUSG00000071369 NA NA 10qA3 NA NA chr10 19831609 TGAxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 148 0 0 40.799119 0.382979 0.02 -0.412035 29 18 777 458 60 60 0 0 GG 23.460171 78 0 2154 0 KEEP + Map3k5 YES MNNG_4 chr10 19953232 19953232 A T exonic Map7 nonsynonymous SNV NM_001198635:c.A224T:p.E75V exonic Mtap7 nonsynonymous SNV uc007enn.2:c.A224T:p.E75V exonic ENSMUSG00000019996 nonsynonymous SNV ENSMUST00000020173:c.A224T:p.E75V 10qA3 NA NA chr10 19953232 GAGxGGA A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 126 2 0 52.796561 0.611111 0.02 -0.315255 14 22 375 528 60 60 0 0 AA 19.160339 64 0 1737 0 KEEP + Map7 NO MNNG_4 chr10 39667397 39667397 G A exonic G630090E17Rik synonymous SNV NM_001173500:c.C672T:p.C224C exonic G630090E17Rik synonymous SNV uc007ewi.1:c.C672T:p.C224C exonic ENSMUSG00000071335 synonymous SNV ENSMUST00000095749:c.C672T:p.C224C 10qB1 NA NA chr10 39667397 CCTxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 340 0 1 186.588311 0.657658 0.02 2.124347 38 73 1044 1828 60 60 0 0 GG 54.737657 182 0 5092 0 KEEP - G630090E17Rik YES MNNG_4 chr10 44159525 44159525 G A exonic Prdm1 nonsynonymous SNV NM_007548:c.C2420T:p.P807L exonic Prdm1 nonsynonymous SNV uc007ezv.2:c.C2420T:p.P807L exonic ENSMUSG00000038151 nonsynonymous SNV ENSMUST00000105490:c.C2420T:p.P807L 10qB2 NA NA chr10 44159525 AGAxGTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 65 0 0 44.975246 0.882353 0.02 -0.149053 2 15 53 405 60 60 0 0 GG 12.63357 42 0 1194 0 KEEP - Prdm1 YES MNNG_4 chr10 5019073 5019073 A C intergenic "Syne1(dist=9481),Syne1(dist=132761)" NA NA exonic Syne1 nonsynonymous SNV uc007egp.1:c.A3603C:p.E1201D exonic ENSMUSG00000019769 nonsynonymous SNV ENSMUST00000056571:c.A5109C:p.E1703D 10qA1 NA NA chr10 5019073 TGAxGTC A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 126 0 0 24.560696 0.292683 0.02 -0.359416 29 12 780 296 60 60 0 0 AA 21.055312 70 0 1951 0 KEEP NA Syne1 NO MNNG_4 chr10 5117219 5117219 C T intergenic "Syne1(dist=107627),Syne1(dist=34615)" NA NA intergenic "Syne1(dist=95063),Syne1(dist=34615)" NA NA exonic ENSMUSG00000019769 nonsynonymous SNV ENSMUST00000056571:c.C13181T:p.A4394V 10qA1 NA NA chr10 5117219 AAGxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 127 1 0 69.92986 0.658537 0.02 -0.359354 14 27 371 685 60 60 0 0 CC 19.828606 66 0 1791 0 KEEP NA Syne1 YES MNNG_4 chr10 5193286 5193286 C T exonic Syne1 synonymous SNV NM_001079686:c.C1962T:p.N654N exonic Syne1 synonymous SNV uc007egq.1:c.C1962T:p.N654N exonic ENSMUSG00000019769 synonymous SNV ENSMUST00000056571:c.C19323T:p.N6441N 10qA1 NA NA chr10 5193286 GAAxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999999 71 0 0 34.252466 0.518519 0.02 -0.236689 13 14 346 357 60 60 0 0 CC 10.827586 36 0 993 0 KEEP + Syne1 YES MNNG_4 chr10 5193295 5193295 C T exonic Syne1 synonymous SNV NM_001079686:c.C1971T:p.S657S exonic Syne1 synonymous SNV uc007egq.1:c.C1971T:p.S657S exonic ENSMUSG00000019769 synonymous SNV ENSMUST00000056571:c.C19332T:p.S6444S 10qA1 NA NA chr10 5193295 TTCxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999999 77 0 0 47.556765 0.5625 0.02 -0.280581 14 18 385 485 60 60 0 0 CC 10.523174 35 0 962 0 KEEP + Syne1 YES MNNG_4 chr10 52078625 52078625 G A exonic Gopc nonsynonymous SNV NM_001199272:c.C407T:p.A136V exonic Gopc nonsynonymous SNV uc007fbf.2:c.C407T:p.A136V exonic ENSMUSG00000019861 nonsynonymous SNV ENSMUST00000020008:c.C407T:p.A136V 10qB3 NA NA chr10 52078625 TTGxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 178 0 0 141.05159 0.833333 0.02 0.974182 10 50 278 1290 60 60 0 0 GG 27.65963 92 0 2547 0 KEEP - Gopc YES MNNG_4 chr10 52120994 52120994 G A exonic Nepn nonsynonymous SNV NM_025684:c.G1019A:p.G340E exonic Nepn nonsynonymous SNV uc007fbh.1:c.G1019A:p.G340E exonic ENSMUSG00000038624 nonsynonymous SNV ENSMUST00000067085:c.G1019A:p.G340E 10qB3 NA NA chr10 52120994 CTGxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 84 0 0 76.184883 0.8125 0.02 -0.280582 6 26 165 705 60 60 0 0 GG 11.730334 39 0 1086 0 KEEP + Nepn YES MNNG_4 chr10 56376604 56376604 G A intergenic "Gja1(dist=266379),4930467K11Rik(dist=821585)" NA NA intergenic "AK146861(dist=181382),Hsf2(dist=829587)" NA NA ncRNA_exonic ENSMUSG00000045048 NA NA 10qB4 NA NA chr10 56376604 ATGxCGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 436 5 151 199.522461 0.580882 0.02 1.905807 57 79 1543 2020 60 60 0 0 GG 54.301673 181 0 4896 0 KEEP NA Gja1 YES MNNG_4 chr10 59756169 59756169 G A exonic Psap nonsynonymous SNV NM_001146120:c.G322A:p.E108K exonic Psap nonsynonymous SNV uc007fen.2:c.G322A:p.E108K exonic ENSMUSG00000004207 nonsynonymous SNV ENSMUST00000004316:c.G322A:p.E108K 10qB4 NA NA chr10 59756169 AAGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 252 13 0 10.50982 0.074074 0.02 2.03607 100 8 2745 189 60 37 0 0 GG 33.992063 113 0 3202 0 KEEP + Psap YES MNNG_4 chr10 61128153 61128153 C T exonic Ppa1 synonymous SNV NM_026438:c.C450T:p.G150G exonic Ppa1 synonymous SNV uc007fge.1:c.C450T:p.G150G exonic ENSMUSG00000020089 synonymous SNV ENSMUST00000020286:c.C450T:p.G150G 10qB4 NA NA chr10 61128153 GGGxGAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 116 0 0 29.665439 0.311111 0.02 -0.394357 31 14 782 351 60 60 0 0 CC 16.469327 55 0 1379 0 KEEP + Ppa1 YES MNNG_4 chr10 62096795 62096795 C T exonic Ddx50 nonsynonymous SNV NM_053183:c.G1160A:p.G387E exonic Ddx50 nonsynonymous SNV uc007fhp.1:c.G1160A:p.G387E exonic ENSMUSG00000020076 nonsynonymous SNV ENSMUST00000171983:c.G965A:p.G322E 10qB4 NA NA chr10 62096795 CTCxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 70 0 0 22.704868 0.322581 0.02 -0.280566 21 10 575 264 60 60 0 0 CC 9.0241 30 0 843 0 KEEP - Ddx50 YES MNNG_4 chr10 62228012 62228012 T A intronic Ccar1 NA NA intronic Ccar1 NA NA intronic ENSMUSG00000020074 NA NA 10qB4 NA NA chr10 62228012 ACTxACC T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 51 0 0 6.382857 0.230769 0.02 -0.113968 10 3 262 80 60 29 0 0 TT 9.022694 30 0 819 0 KEEP - Ccar1 NO MNNG_4 chr10 6399762 6399762 C T intronic Plekhg1 NA NA intronic Plekhg1 NA NA ncRNA_exonic ENSMUSG00000082605 NA NA 10qA1 NA NA chr10 6399762 CTTxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 169 4 3 68.112464 0.657895 0.02 -0.341955 13 25 364 668 60 60 0 0 CC 32.735253 109 0 3031 0 KEEP - Plekhg1 YES MNNG_4 chr10 70406120 70406120 G A exonic Bicc1 stopgain SNV NM_031397:c.C2185T:p.Q729X exonic Bicc1 stopgain SNV uc007foi.1:c.C628T:p.Q210X exonic ENSMUSG00000014329 stopgain SNV ENSMUST00000014473:c.C2185T:p.Q729X 10qB5.3 NA NA chr10 70406120 CCTxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 151 0 0 96.729135 0.573529 0.02 0.903884 29 39 805 983 60 60 0 0 GG 19.552068 65 0 1838 0 KEEP - Bicc1 YES MNNG_4 chr10 70423930 70423930 C T exonic Bicc1 nonsynonymous SNV NM_031397:c.G346A:p.D116N exonic Bicc1 nonsynonymous SNV uc007fof.1:c.G100A:p.D34N exonic ENSMUSG00000014329 nonsynonymous SNV ENSMUST00000014473:c.G346A:p.D116N 10qB5.3 NA NA chr10 70423930 CATxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 155 0 0 42.320214 0.346154 0.02 1.044068 34 18 932 483 60 60 0 0 CC 22.19531 74 0 2042 0 KEEP - Bicc1 YES MNNG_4 chr10 70826242 70826242 C T exonic Ipmk nonsynonymous SNV NM_027184:c.C184T:p.P62S exonic Ipmk nonsynonymous SNV uc007for.1:c.C184T:p.P62S exonic ENSMUSG00000060733 nonsynonymous SNV ENSMUST00000079252:c.C184T:p.P62S 10qB5.3 NA NA chr10 70826242 CAGxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 88 2 0 16.635157 0.258065 0.02 -0.27155 23 8 615 205 60 60 0 0 CC 12.632326 42 0 1166 0 KEEP + Ipmk YES MNNG_4 chr10 74091666 74091666 C T intronic Pcdh15 NA NA ncRNA_intronic av NA NA intronic ENSMUSG00000052613 NA NA 10qB5.3 NA NA chr10 74091666 GGAxGCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 78 0 0 22.662285 0.344828 0.02 -0.254041 19 10 438 260 60 60 0 0 CC 11.114333 37 0 899 0 KEEP + Pcdh15 YES MNNG_4 chr10 74982063 74982063 G A UTR5 Snrpd3 NA NA UTR5 Snrpd3 NA NA UTR5 ENSMUSG00000020180 NA NA 10qC1 NA NA chr10 74982063 CCGxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 116 2 0 55.863203 0.52381 0.02 -0.368237 20 22 552 580 60 60 0 0 GG 17.747414 59 0 1662 0 KEEP + Snrpd3 YES MNNG_4 chr10 75103680 75103680 C A exonic Susd2 nonsynonymous SNV NM_001162913:c.G253T:p.G85W exonic Susd2 nonsynonymous SNV uc011xgq.1:c.G253T:p.G85W exonic ENSMUSG00000006342 nonsynonymous SNV ENSMUST00000077610:c.G253T:p.G85W 10qC1 NA NA chr10 75103680 TCCxAGA C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.612219 0.612407 0.999693 64 0 0 20.9096 0.346154 0.02 -0.227977 17 9 473 239 60 60 0 0 CC 9.625687 32 0 911 0 KEEP - Susd2 NO MNNG_4 chr10 75105289 75105289 G A exonic Susd2 nonsynonymous SNV NM_027890:c.C197T:p.S66F exonic Susd2 nonsynonymous SNV uc007fqt.2:c.C197T:p.S66F exonic ENSMUSG00000006342 nonsynonymous SNV ENSMUST00000095541:c.C197T:p.S66F 10qC1 NA NA chr10 75105289 GAGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 107 0 0 70.425122 0.65 0.02 -0.349734 14 26 368 692 60 60 0 0 GG 16.539714 55 0 1550 0 KEEP - Susd2 YES MNNG_4 chr10 7559810 7559810 G A exonic Zc3h12d nonsynonymous SNV NM_172785:c.G178A:p.V60M exonic Zc3h12d nonsynonymous SNV uc007eiq.2:c.G178A:p.V60M exonic ENSMUSG00000039981 nonsynonymous SNV ENSMUST00000039484:c.G178A:p.V60M 10qA1 NA NA chr10 7559810 GTAxTGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780958 0.78106 0.999869 56 0 0 30.948692 0.411765 0.02 -0.297747 20 14 535 343 60 60 0 0 GG 6.316824 21 0 593 0 KEEP + Zc3h12d YES MNNG_4 chr10 75906285 75906285 C T upstream Pcnt NA NA upstream Pcnt NA NA upstream ENSMUSG00000001151 NA NA 10qC1 NA NA chr10 75906285 TTTxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 100 0 0 41.360894 0.425 0.02 -0.350733 23 17 642 451 60 60 0 0 CC 15.040529 50 0 1431 0 KEEP - Pcnt YES MNNG_4 chr10 75933043 75933043 C T exonic Mcm3ap nonsynonymous SNV NM_019434:c.C244T:p.L82F exonic Mcm3ap nonsynonymous SNV uc007fup.1:c.C244T:p.L82F exonic ENSMUSG00000001150 nonsynonymous SNV ENSMUST00000001178:c.C307T:p.L103F 10qC1 NA NA chr10 75933043 GGAxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 274 3 0 63.448628 0.35443 0.02 0.807382 51 28 1391 724 60 60 0 0 CC 48.989928 163 0 4505 0 KEEP + Mcm3ap YES MNNG_4 chr10 76247783 76247783 C T intronic Pcbp3 NA NA intronic Pcbp3 NA NA intronic ENSMUSG00000001120 NA NA 10qC1 NA NA chr10 76247783 GCAxGTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 91 2 0 18.232139 0.257143 0.02 -0.306805 26 9 678 226 60 60 0 0 CC 12.610395 42 0 1070 0 KEEP - Pcbp3 YES MNNG_4 chr10 76575441 76575441 G A intronic Col18a1 NA NA exonic Col18a1 synonymous SNV uc011xhb.1:c.C981T:p.L327L exonic ENSMUSG00000001435 synonymous SNV ENSMUST00000072755:c.C981T:p.L327L 10qC1 NA NA chr10 76575441 AGAxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 76 0 0 50.692991 0.633333 0.02 -0.263028 11 19 303 502 60 60 0 0 GG 12.332946 41 0 1170 0 KEEP - Col18a1 YES MNNG_4 chr10 77453447 77453447 G A exonic Pfkl synonymous SNV NM_008826:c.C1620T:p.G540G exonic Pfkl synonymous SNV uc007fwo.2:c.C1620T:p.G540G exonic ENSMUSG00000020277 synonymous SNV ENSMUST00000020522:c.C1620T:p.G540G 10qC1 NA NA chr10 77453447 TGAxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 149 2 0 54.264352 0.488889 0.02 -0.394115 23 22 612 573 60 60 0 0 GG 24.632357 82 0 2260 0 KEEP - Pfkl YES MNNG_4 chr10 77456891 77456891 G A exonic Pfkl nonsynonymous SNV NM_008826:c.C1117T:p.L373F exonic Pfkl nonsynonymous SNV uc007fwo.2:c.C1117T:p.L373F exonic ENSMUSG00000020277 nonsynonymous SNV ENSMUST00000020522:c.C1117T:p.L373F 10qC1 NA NA chr10 77456891 GGAxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.997163 0.997163 1 274 6 0 114.006976 0.628571 0.02 0.877562 26 44 717 1131 60 60 0 0 GG 48.007474 160 0 4339 0 KEEP - Pfkl YES MNNG_4 chr10 77906530 77906530 A G exonic Pdxk nonsynonymous SNV NM_172134:c.T755C:p.L252P exonic Pdxk nonsynonymous SNV uc007fxu.2:c.T755C:p.L252P exonic ENSMUSG00000032788 nonsynonymous SNV ENSMUST00000041616:c.T755C:p.L252P 10qC1 NA NA chr10 77906530 TTGxGAT A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.693667 0.693668 0.999998 90 0 0 14.764477 0.233333 0.02 -0.263024 23 7 621 185 60 60 0 0 AA 14.135821 47 0 1306 0 KEEP - Pdxk NO MNNG_4 chr10 77906531 77906531 G A exonic Pdxk nonsynonymous SNV NM_172134:c.C754T:p.L252F exonic Pdxk nonsynonymous SNV uc007fxu.2:c.C754T:p.L252F exonic ENSMUSG00000032788 nonsynonymous SNV ENSMUST00000041616:c.C754T:p.L252F 10qC1 NA NA chr10 77906531 TGAxATT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 88 0 0 14.20349 0.25 0.02 -0.245488 21 7 584 177 60 60 0 0 GG 14.430452 48 0 1362 0 KEEP - Pdxk YES MNNG_4 chr10 79046436 79046436 G A intronic Theg NA NA intronic Theg NA NA intronic ENSMUSG00000020317 NA NA 10qC1 NA NA chr10 79046436 GCTxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.999859 33 0 0 11.290252 0.454545 0.02 -0.096427 6 5 167 122 60 60 0 0 GG 5.414806 18 0 514 0 KEEP - Theg YES MNNG_4 chr10 79150856 79150856 G A UTR3 Cdc34 NA NA UTR3 Cdc34 NA NA UTR3 ENSMUSG00000020307 NA NA 10qC1 NA NA chr10 79150856 GTGxGCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 101 0 1 73.32514 0.613636 0.02 -0.394552 17 27 459 732 60 60 0 0 GG 15.008805 50 0 1365 0 KEEP + Cdc34 YES MNNG_4 chr10 79328091 79328091 C T exonic BC005764 nonsynonymous SNV NM_181681:c.G1661A:p.G554E exonic BC005764 nonsynonymous SNV uc007gag.1:c.G1010A:p.G337E exonic ENSMUSG00000035835 nonsynonymous SNV ENSMUST00000092325:c.G1661A:p.G554E 10qC1 NA NA chr10 79328091 CCCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 140 0 0 45.637882 0.372549 0.02 1.15017 32 19 878 512 60 60 0 0 CC 21.043682 70 0 1922 0 KEEP - BC005764 YES MNNG_4 chr10 79363014 79363014 G A intronic Med16 NA NA intronic Med16 NA NA intronic ENSMUSG00000013833 NA NA 10qC1 NA NA chr10 79363014 TGGxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120422 0.120436 0.999879 42 0 0 15.969154 0.545455 0.02 -0.096454 5 6 138 164 60 60 0 0 GG 6.615395 22 0 601 0 KEEP - Med16 YES MNNG_4 chr10 79524977 79524977 C T exonic Sbno2 nonsynonymous SNV NM_183426:c.G2159A:p.G720D exonic Sbno2 nonsynonymous SNV uc007gbq.1:c.G2111A:p.G704D exonic ENSMUSG00000035673 nonsynonymous SNV ENSMUST00000042771:c.G2159A:p.G720D 10qC1 NA NA chr10 79524977 CGGxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 84 0 0 44.657747 0.542857 0.02 -0.306681 16 19 435 461 60 60 0 0 CC 12.267972 41 0 1092 0 KEEP - Sbno2 YES MNNG_4 chr10 79651195 79651195 C T exonic Efna2 nonsynonymous SNV NM_007909:c.C451T:p.P151S exonic Efna2 nonsynonymous SNV uc007gcg.2:c.C451T:p.P151S exonic ENSMUSG00000003070 nonsynonymous SNV ENSMUST00000003154:c.C451T:p.P151S 10qC1 NA NA chr10 79651195 ACAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 169 3 0 48.679526 0.403846 0.02 1.035355 31 21 841 539 60 60 0 0 CC 25.226621 84 0 2263 0 KEEP + Efna2 YES MNNG_4 chr10 79777381 79777381 G A exonic Apc2 synonymous SNV NM_011789:c.G5436A:p.R1812R exonic Apc2 synonymous SNV uc007gcp.1:c.G5436A:p.R1812R exonic ENSMUSG00000020135 synonymous SNV ENSMUST00000020349:c.G5436A:p.R1812R 10qC1 NA NA chr10 79777381 ACGxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 93 0 0 70.954142 0.627907 0.02 -0.376806 16 27 431 704 60 60 0 0 GG 12.333261 41 0 1163 0 KEEP + Apc2 YES MNNG_4 chr10 79784935 79784935 G A exonic Pcsk4 synonymous SNV NM_008793:c.C1713T:p.T571T exonic Pcsk4 synonymous SNV uc011xiq.1:c.C1032T:p.T344T exonic ENSMUSG00000020131 synonymous SNV ENSMUST00000020340:c.C1713T:p.T571T 10qC1 NA NA chr10 79784935 CAGxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 157 4 0 70.988893 0.5625 0.02 -0.420797 21 27 559 724 60 60 0 0 GG 24.349968 81 0 2227 0 KEEP - Pcsk4 YES MNNG_4 chr10 79796676 79796676 G A intronic Reep6 NA NA intronic Reep6 NA NA intronic ENSMUSG00000035504 NA NA 10qC1 NA NA chr10 79796676 GCGxGCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 118 0 0 85.661569 0.673913 0.02 -0.420859 15 31 411 835 60 60 0 0 GG 18.638762 62 0 1668 0 KEEP + Reep6 YES MNNG_4 chr10 79827877 79827877 G A exonic Plk5 nonsynonymous SNV NM_183152:c.G1651A:p.E551K exonic Plk5 nonsynonymous SNV uc007gcx.2:c.G1651A:p.E551K exonic ENSMUSG00000035486 nonsynonymous SNV ENSMUST00000039836:c.G1651A:p.E551K 10qC1 NA NA chr10 79827877 GGGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 53 0 0 32.745223 0.705882 0.02 -0.149046 5 12 138 315 60 60 0 0 GG 9.021981 30 0 837 0 KEEP + Plk5 YES MNNG_4 chr10 80641816 80641816 C T intronic Eef2 NA NA intronic Eef2 NA NA intronic ENSMUSG00000034994 NA NA 10qC1 NA NA chr10 80641816 TCTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 205 0 0 51.924472 0.333333 0.02 0.957757 48 24 1319 604 60 60 0 0 CC 27.486852 100 1 2779 24 KEEP + Eef2 YES MNNG_4 chr10 80740700 80740700 A G exonic Tjp3 nonsynonymous SNV NM_001282095:c.T1468C:p.F490L exonic Tjp3 nonsynonymous SNV uc007gha.1:c.T1468C:p.F490L exonic ENSMUSG00000034917 nonsynonymous SNV ENSMUST00000045744:c.T1468C:p.F490L 10qC1 NA NA chr10 80740700 GGAxGAC A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 89 0 0 39.615237 0.355556 0.02 -0.394569 29 16 780 447 60 60 0 0 AA 11.730902 39 0 1091 0 KEEP - Tjp3 NO MNNG_4 chr10 80970707 80970707 G A exonic Gna15 synonymous SNV NM_010304:c.C864T:p.T288T exonic Gna15 synonymous SNV uc007gii.1:c.C114T:p.T38T exonic ENSMUSG00000034792 synonymous SNV ENSMUST00000043709:c.C864T:p.T288T 10qC1 NA NA chr10 80970707 GGAxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 87 0 0 35.902339 0.441176 0.02 -0.297826 19 15 512 389 60 60 0 0 GG 13.234366 44 0 1233 0 KEEP - Gna15 YES MNNG_4 chr10 80974842 80974842 C T exonic Gna15 nonsynonymous SNV NM_010304:c.G514A:p.E172K exonic Gna15 nonsynonymous SNV uc007gij.1:c.G514A:p.E172K exonic ENSMUSG00000034792 nonsynonymous SNV ENSMUST00000043709:c.G514A:p.E172K 10qC1 NA NA chr10 80974842 CCTxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 51 0 0 18.854591 0.380952 0.02 -0.184133 13 8 362 211 60 60 0 0 CC 6.919518 23 0 669 0 KEEP - Gna15 YES MNNG_4 chr10 80993818 80993818 G A intronic Gna11 NA NA intronic Gna11 NA NA intronic ENSMUSG00000034781 NA NA 10qC1 NA NA chr10 80993818 GGGxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 78 0 0 75.828523 0.7 0.02 -0.35068 12 28 330 731 60 60 0 0 GG 11.368292 38 0 1044 0 KEEP - Gna11 YES MNNG_4 chr10 81471167 81471167 C T intergenic "Zfp781(dist=77942),Zfp873(dist=39705)" NA NA intergenic "Zfp781(dist=77942),AK136722(dist=36222)" NA NA exonic ENSMUSG00000074854 nonsynonymous SNV ENSMUST00000079428:c.C32T:p.A11V 10qC1 "Score=0.954421;Name=No.5935,chr10:81123500" NA chr10 81471167 CTGxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 224 0 0 16.335624 0.155172 0.02 0.973988 49 9 1328 229 60 60 0 0 CC 40.87225 136 0 3680 0 KEEP NA Zfp781 YES MNNG_4 chr10 8570308 8570308 G A intronic Sash1 NA NA intronic "SASH1,Sash1" NA NA intronic ENSMUSG00000015305 NA NA 10qA1 NA NA chr10 8570308 ACAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 86 0 0 44.297594 0.53125 0.02 -0.280568 15 17 412 458 60 60 0 0 GG 15.032445 50 0 1384 0 KEEP - Sash1 YES MNNG_4 chr10 86412619 86412619 G A intronic Stab2 NA NA intronic Stab2 NA NA intronic ENSMUSG00000035459 NA NA 10qC1 NA NA chr10 86412619 TGGxCTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138789 0.139832 0.99254 22 0 0 28.515693 0.833333 0.02 -0.105199 2 10 54 261 60 60 0 0 GG 2.706644 9 0 246 0 KEEP - Stab2 YES MNNG_4 chr10 86956243 86956243 C T UTR5 Ascl1 NA NA UTR5 Ascl1 NA NA UTR5 ENSMUSG00000020052 NA NA 10qC1 NA NA chr10 86956243 CGCxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 201 0 0 62.688608 0.376812 0.02 0.993713 43 26 1152 701 60 60 0 0 CC 33.080301 110 0 3014 0 KEEP - Ascl1 YES MNNG_4 chr10 94956288 94956288 C T exonic Mrpl42 nonsynonymous SNV NM_026065:c.G193A:p.D65N exonic Mrpl42 nonsynonymous SNV uc007gwi.1:c.G193A:p.D65N exonic ENSMUSG00000062981 nonsynonymous SNV ENSMUST00000075829:c.G193A:p.D65N 10qC2 NA NA chr10 94956288 TGTxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 289 0 0 84.211597 0.355769 0.02 2.186204 67 37 1852 960 60 60 0 0 CC 41.758224 139 0 3880 0 KEEP - Mrpl42 YES MNNG_4 chr10 95494253 95494253 G A exonic Eea1 nonsynonymous SNV NM_001001932:c.G3076A:p.A1026T exonic Eea1 nonsynonymous SNV uc007gwv.1:c.G3076A:p.A1026T exonic ENSMUSG00000036499 nonsynonymous SNV ENSMUST00000053484:c.G3076A:p.A1026T 10qC2 NA NA chr10 95494253 CAGxCGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 41 0 0 32.343803 0.705882 0.02 -0.149033 5 12 137 311 60 60 0 0 GG 6.306453 21 0 561 0 KEEP + Eea1 YES MNNG_4 chr10 99921622 99921622 G A exonic Tmtc3 nonsynonymous SNV NM_001033332:c.C1262T:p.T421I exonic Tmtc3 nonsynonymous SNV uc007gxt.2:c.C1262T:p.T421I exonic ENSMUSG00000036676 nonsynonymous SNV ENSMUST00000058154:c.C1262T:p.T421I 10qD1 NA NA chr10 99921622 TGGxTTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 93 0 0 42.688775 0.666667 0.02 -0.210413 8 16 222 417 60 60 0 0 GG 17.444483 58 0 1605 0 KEEP - Tmtc3 YES MNNG_4 chr11 100104862 100104862 C T intergenic "Krt14(dist=36038),Krt16(dist=2544)" NA NA intergenic "Krt14(dist=36038),Krt16(dist=2544)" NA NA ncRNA_exonic ENSMUSG00000082456 NA NA 11qD NA NA chr11 100104862 GCCxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227586 0.229173 0.993072 27 0 0 27.619995 0.666667 0.02 -0.131522 5 10 137 270 60 60 0 0 CC 3.308952 11 0 312 0 KEEP NA Krt14 YES MNNG_4 chr11 100366285 100366285 C T exonic Acly nonsynonymous SNV NM_001199296:c.G1222A:p.E408K exonic Acly nonsynonymous SNV uc007lll.2:c.G1222A:p.E408K exonic ENSMUSG00000020917 nonsynonymous SNV ENSMUST00000100457:c.G1222A:p.E408K 11qD NA NA chr11 100366285 TTTxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 50 0 0 24.188919 0.416667 0.02 -0.210438 14 10 391 265 60 60 0 0 CC 5.702978 19 0 513 0 KEEP - Acly YES MNNG_4 chr11 100766557 100766557 C T exonic Stat3 synonymous SNV NM_011486:c.G606A:p.Q202Q exonic Stat3 synonymous SNV uc007lmo.1:c.G606A:p.Q202Q exonic ENSMUSG00000004040 synonymous SNV ENSMUST00000092671:c.G606A:p.Q202Q 11qD NA NA chr11 100766557 CAGxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.454342 0.457757 0.99254 35 0 0 14.659803 0.318182 0.02 -0.192806 15 7 411 173 60 60 0 0 CC 2.707618 9 0 261 0 KEEP - Stat3 YES MNNG_4 chr11 100939739 100939739 C T UTR5 Hsd17b1 NA NA UTR5 Hsd17b1 NA NA UTR5 ENSMUSG00000019301 NA NA 11qD NA NA chr11 100939739 GAAxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 211 0 0 117.086248 0.589744 0.02 0.913551 32 46 869 1181 60 60 0 0 CC 30.377896 101 0 2799 0 KEEP + Hsd17b1 YES MNNG_4 chr11 100947158 100947158 G A exonic Coasy nonsynonymous SNV NM_027896:c.G1439A:p.S480N exonic Coasy nonsynonymous SNV uc007lnd.1:c.G1439A:p.S480N exonic ENSMUSG00000001755 nonsynonymous SNV ENSMUST00000107308:c.G1439A:p.S480N 11qD NA NA chr11 100947158 AGAxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 0.999999 79 0 0 20.829933 0.333333 0.02 -0.245506 18 9 494 240 60 60 0 0 GG 10.811609 36 0 985 0 KEEP + Coasy YES MNNG_4 chr11 100985864 100985864 C T exonic Tubg1 nonsynonymous SNV NM_134024:c.C821T:p.T274I exonic Tubg1 nonsynonymous SNV uc007lnk.1:c.C821T:p.T274I exonic ENSMUSG00000035198 nonsynonymous SNV ENSMUST00000043680:c.C821T:p.T274I 11qD NA NA chr11 100985864 ATAxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161282 0.162467 0.992708 33 0 5 8.790567 0.333333 0.02 -0.113979 8 4 222 102 60 60 0 0 CC 3.894272 13 0 337 0 KEEP + Tubg1 YES MNNG_4 chr11 101021464 101021464 C T intronic Tubg2 NA NA intronic Tubg2 NA NA intronic ENSMUSG00000045007 NA NA 11qD NA NA chr11 101021464 AGCxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 279 0 12 157.138886 0.561404 0.02 2.090438 50 64 1359 1606 60 60 0 0 CC 38.347581 128 0 3470 0 KEEP + Tubg2 YES MNNG_4 chr11 101035494 101035494 G A exonic Ccr10 nonsynonymous SNV NM_007721:c.C523T:p.P175S exonic Ccr10 nonsynonymous SNV uc007lns.1:c.C523T:p.P175S exonic ENSMUSG00000044052 nonsynonymous SNV ENSMUST00000062759:c.C523T:p.P175S 11qD NA NA chr11 101035494 CAGxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999984 0.999984 1 205 0 0 94.468011 0.398058 0.02 2.080353 62 41 1649 1050 60 60 0 0 GG 23.149205 77 0 2100 0 KEEP - Ccr10 YES MNNG_4 chr11 101035545 101035545 C T exonic Ccr10 nonsynonymous SNV NM_007721:c.G472A:p.A158T exonic Ccr10 nonsynonymous SNV uc007lns.1:c.G472A:p.A158T exonic ENSMUSG00000044052 nonsynonymous SNV ENSMUST00000062759:c.G472A:p.A158T 11qD NA NA chr11 101035545 GCGxTCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 278 0 0 197.993296 0.586466 0.02 1.913868 55 78 1503 2000 60 60 0 0 CC 30.933047 103 0 2827 0 KEEP - Ccr10 YES MNNG_4 chr11 101044940 101044940 C T intronic Cntnap1 NA NA intronic Cntnap1 NA NA intronic ENSMUSG00000017167 NA NA 11qD NA NA chr11 101044940 TTCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 134 0 0 105.244958 0.597015 0.02 1.009942 27 40 736 1058 60 60 0 0 CC 14.735216 49 0 1348 0 KEEP + Cntnap1 YES MNNG_4 chr11 101126494 101126494 G A intronic Wnk4 NA NA intronic Wnk4 NA NA ncRNA_exonic ENSMUSG00000085083 NA NA 11qD NA NA chr11 101126494 CGGxGCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 109 0 0 49.671409 0.381818 0.02 1.116491 34 21 905 555 60 60 0 0 GG 12.933296 43 0 1190 0 KEEP + Wnk4 YES MNNG_4 chr11 101136629 101136629 C T exonic Wnk4 synonymous SNV NM_175638:c.C2667T:p.P889P exonic Wnk4 synonymous SNV uc007loe.2:c.C2667T:p.P889P exonic;splicing ENSMUSG00000035112;ENSMUSG00000035112(ENSMUST00000168297:exon15:c.2456-2C>T) synonymous SNV ENSMUST00000103108:c.C2667T:p.P889P 11qD NA NA chr11 101136629 TCCxGTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 729 2 0 400.367509 0.538462 0.02 5.552157 132 154 3118 4126 60 60 0 0 CC 106.060743 353 0 8946 0 KEEP + Wnk4 YES MNNG_4 chr11 101152809 101152809 G A exonic Becn1 synonymous SNV NM_019584:c.C862T:p.L288L exonic Becn1 synonymous SNV uc007lol.1:c.C607T:p.L203L exonic ENSMUSG00000035086 synonymous SNV ENSMUST00000129863:c.C247T:p.L83L 11qD NA NA chr11 101152809 CCAxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38739 0.387407 0.999957 51 0 0 20.912705 0.45 0.02 -0.175324 11 9 293 226 60 60 0 0 GG 7.819758 26 0 714 0 KEEP - Becn1 YES MNNG_4 chr11 101152820 101152820 T A exonic Becn1 nonsynonymous SNV NM_019584:c.A851T:p.N284I exonic Becn1 nonsynonymous SNV uc007lol.1:c.A596T:p.N199I exonic ENSMUSG00000035086 nonsynonymous SNV ENSMUST00000129863:c.A236T:p.N79I 11qD NA NA chr11 101152820 TTAxTGA T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 48 0 0 18.707801 0.470588 0.02 -0.149024 9 8 241 200 60 60 0 0 TT 7.484617 25 0 665 0 KEEP - Becn1 NO MNNG_4 chr11 101374067 101374067 G A exonic Brca1 nonsynonymous SNV NM_009764:c.C4322T:p.P1441L exonic Brca1 nonsynonymous SNV uc007lpd.2:c.C4322T:p.P1441L exonic ENSMUSG00000017146 nonsynonymous SNV ENSMUST00000017290:c.C4322T:p.P1441L 11qD NA NA chr11 101374067 GTGxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 71 0 0 47.607036 0.545455 0.02 -0.28936 15 18 415 489 60 60 0 0 GG 9.311083 31 0 839 0 KEEP - Brca1 YES MNNG_4 chr11 102154523 102154523 C T intronic Atxn7l3 NA NA intronic Atxn7l3 NA NA intronic ENSMUSG00000059995 NA NA 11qD NA NA chr11 102154523 TCAxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552849 0.552887 0.999931 58 0 0 43.891261 0.68 0.02 -0.219117 8 17 206 426 60 60 0 0 CC 7.518765 25 0 681 0 KEEP - Atxn7l3 YES MNNG_4 chr11 102297630 102297630 C T intronic Grn NA NA intronic Grn NA NA intronic ENSMUSG00000034708 NA NA 11qD NA NA chr11 102297630 TTAxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 134 2 0 104.21265 0.585714 0.02 0.886349 29 41 784 1053 60 60 0 0 CC 15.325863 51 0 1377 0 KEEP + Grn YES MNNG_4 chr11 102623569 102623569 G A exonic Adam11 nonsynonymous SNV NM_001110778:c.G172A:p.V58I exonic Adam11 nonsynonymous SNV uc007lsi.2:c.G172A:p.V58I exonic ENSMUSG00000020926 nonsynonymous SNV ENSMUST00000068150:c.G172A:p.V58I 11qE1 NA NA chr11 102623569 CTGxTAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 92 0 0 38.090036 0.34 0.02 -0.438332 33 17 883 439 60 60 0 0 GG 9.010515 30 0 801 0 KEEP + Adam11 YES MNNG_4 chr11 103047924 103047924 C G intronic Fmnl1 NA NA intronic "Fmnl1,Fr1" NA NA intronic ENSMUSG00000055805 NA NA 11qE1 NA NA chr11 103047924 TCTxAGA C G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 120 1 0 20.384826 0.16129 0.02 1.053839 52 10 1426 275 60 60 0 0 CC 14.739206 49 0 1389 0 KEEP + Fmnl1 NO MNNG_4 chr11 103195232 103195232 G A exonic Arhgap27 synonymous SNV NM_133715:c.C1438T:p.L480L exonic Arhgap27 synonymous SNV uc007luc.1:c.C811T:p.L271L exonic ENSMUSG00000034255 synonymous SNV ENSMUST00000041385:c.C1438T:p.L480L 11qE1 NA NA chr11 103195232 CCAxCGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 155 0 0 73.851876 0.395062 0.02 0.88721 49 32 1355 822 60 60 0 0 GG 18.950135 63 0 1767 0 KEEP - Arhgap27 YES MNNG_4 chr11 103200420 103200420 G A exonic Arhgap27 synonymous SNV NM_133715:c.C744T:p.V248V exonic Arhgap27 synonymous SNV uc007luc.1:c.C117T:p.V39V exonic ENSMUSG00000034255 synonymous SNV ENSMUST00000041385:c.C744T:p.V248V 11qE1 NA NA chr11 103200420 CGGxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 100 0 0 32.219993 0.358974 0.02 -0.368232 25 14 685 366 60 60 0 0 GG 15.334615 51 0 1394 0 KEEP - Arhgap27 YES MNNG_4 chr11 103229089 103229089 C T intronic Plekhm1 NA NA intronic Plekhm1 NA NA intronic ENSMUSG00000034247 NA NA 11qE1 NA NA chr11 103229089 AGAxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161341 0.162467 0.993072 27 0 0 14.864154 0.461538 0.02 -0.113981 7 6 192 159 60 60 0 0 CC 3.306438 11 0 294 0 KEEP - Plekhm1 YES MNNG_4 chr11 103511508 103511508 C T UTR3 Rprml NA NA UTR3 Rprml NA NA UTR3 ENSMUSG00000046215 NA NA 11qE1 NA NA chr11 103511508 TTTxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 150 0 0 114.788262 0.542169 0.02 0.77231 38 45 1052 1182 60 60 0 0 CC 17.146861 57 0 1626 0 KEEP + Rprml YES MNNG_4 chr11 104171678 104171678 C T exonic Mapt nonsynonymous SNV NM_010838:c.C445T:p.P149S exonic Mapt nonsynonymous SNV uc011yga.1:c.C379T:p.P127S exonic ENSMUSG00000018411 nonsynonymous SNV ENSMUST00000106991:c.C379T:p.P127S 11qE1 NA NA chr11 104171678 ACAxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 91 2 0 45.039592 0.44186 0.02 -0.376984 24 19 654 488 60 60 0 0 CC 12.328856 41 0 1110 0 KEEP + Mapt YES MNNG_4 chr11 104196997 104196997 C T exonic Kansl1 nonsynonymous SNV NM_001081045:c.G2647A:p.D883N exonic 1700081L11Rik nonsynonymous SNV uc007lwj.1:c.G2647A:p.D883N exonic ENSMUSG00000018412 nonsynonymous SNV ENSMUST00000106977:c.G2647A:p.D883N 11qE1 NA NA chr11 104196997 CGTxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 172 0 0 90.689962 0.507042 0.02 0.96606 35 36 974 949 60 60 0 0 CC 19.839288 66 0 1845 0 KEEP - Kansl1 YES MNNG_4 chr11 104991827 104991827 G A intronic Mettl2 NA NA intronic Mettl2 NA NA intronic ENSMUSG00000020691 NA NA 11qE1 NA NA chr11 104991827 CAGxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 97 3 0 43.391437 0.431818 0.02 -0.385437 25 19 645 474 60 60 0 0 GG 12.330464 41 0 1119 0 KEEP + Mettl2 YES MNNG_4 chr11 105850177 105850177 G A exonic Ace synonymous SNV NM_009598:c.G2028A:p.E676E exonic Ace synonymous SNV uc007lxw.1:c.G2028A:p.E676E exonic ENSMUSG00000020681 synonymous SNV ENSMUST00000001964:c.G2028A:p.E676E 11qE1 NA NA chr11 105850177 GGAxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 150 0 0 77.825136 0.438356 0.02 0.931043 41 32 1113 843 60 60 0 0 GG 15.01355 50 0 1387 0 KEEP + Ace YES MNNG_4 chr11 106112578 106112578 G A exonic Ftsj3 synonymous SNV NM_025310:c.C1356T:p.D452D exonic Ftsj3 synonymous SNV uc007lym.1:c.C1356T:p.D452D exonic ENSMUSG00000020706 synonymous SNV ENSMUST00000021048:c.C1356T:p.D452D 11qE1 NA NA chr11 106112578 GATxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 78 0 0 26.838113 0.387097 0.02 -0.271684 19 12 501 301 60 60 0 0 GG 9.926551 33 0 932 0 KEEP - Ftsj3 YES MNNG_4 chr11 106127936 106127936 C T exonic Smarcd2 nonsynonymous SNV NM_031878:c.G497A:p.G166E exonic Smarcd2 nonsynonymous SNV uc007lyo.2:c.G497A:p.G166E exonic ENSMUSG00000078619 nonsynonymous SNV ENSMUST00000106843:c.G497A:p.G166E 11qE1 NA NA chr11 106127936 GTTxCCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 262 0 0 146.551499 0.527778 0.02 2.248093 51 57 1379 1518 60 60 0 0 CC 39.390523 131 0 3644 0 KEEP - Smarcd2 YES MNNG_4 chr11 106280124 106280124 G A intronic Ern1 NA NA intronic Ern1 NA NA intronic ENSMUSG00000020715 NA NA 11qE1 NA NA chr11 106280124 CAAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 81 0 0 27.329083 0.478261 0.02 -0.210431 12 11 336 290 60 60 0 0 GG 12.623406 42 0 1200 0 KEEP - Ern1 YES MNNG_4 chr11 106942492 106942492 C T intronic Bptf NA NA intronic Bptf NA NA intronic ENSMUSG00000040481 NA NA 11qE1 NA NA chr11 106942492 TAGxATT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760405 0.760887 0.999366 55 0 0 47.182068 0.575758 0.02 -0.28928 14 19 381 479 60 60 0 0 CC 5.113596 17 0 478 0 KEEP - Bptf YES MNNG_4 chr11 107845378 107845378 G A intronic Prkca NA NA intronic Prkca NA NA intronic ENSMUSG00000050965 NA NA 11qE1 NA NA chr11 107845378 GGGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984158 0.984161 0.999997 94 0 0 70.793994 0.482759 0.02 1.088945 30 28 816 749 60 60 0 0 GG 8.420745 28 0 776 0 KEEP - Prkca YES MNNG_4 chr11 109435299 109435299 G A intronic Wipi1 NA NA intronic Wipi1 NA NA intronic ENSMUSG00000041895 NA NA 11qE1 NA NA chr11 109435299 ACAxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 175 2 0 113.866599 0.46 0.02 0.720537 54 46 1503 1219 60 60 0 0 GG 12.867634 53 1 1511 29 KEEP - Wipi1 YES MNNG_4 chr11 109674930 109674930 G A exonic 1700012B07Rik nonsynonymous SNV NM_001162428:c.C199T:p.P67S exonic 1700012B07Rik nonsynonymous SNV uc007mcx.2:c.C199T:p.P67S exonic ENSMUSG00000020617 nonsynonymous SNV ENSMUST00000020941:c.C199T:p.P67S 11qE1 NA NA chr11 109674930 CCGxGTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 37 0 0 16.874264 0.4375 0.02 -0.148618 9 7 247 183 60 60 0 0 GG 4.211057 14 0 391 0 KEEP - 1700012B07Rik YES MNNG_4 chr11 110044173 110044173 C T exonic Abca6 synonymous SNV NM_147218:c.G4365A:p.K1455K exonic Abca6 synonymous SNV uc007mdj.2:c.G4365A:p.K1455K exonic ENSMUSG00000044749 synonymous SNV ENSMUST00000044003:c.G4365A:p.K1455K 11qE1 NA NA chr11 110044173 ATGxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 132 0 0 82.59195 0.603774 0.02 1.123925 21 32 580 828 60 60 0 0 CC 15.039933 50 0 1403 0 KEEP - Abca6 YES MNNG_4 chr11 112645398 112645398 C T intronic Sox9 NA NA intronic Sox9 NA NA intronic ENSMUSG00000000567 NA NA 11qE2 NA NA chr11 112645398 GTCxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641278 0.641347 0.999892 57 1 0 36.511939 0.535714 0.02 -0.24508 13 15 359 378 60 60 0 0 CC 6.917984 23 0 638 0 KEEP + Sox9 YES MNNG_4 chr11 113718000 113718000 T G exonic Sdk2 nonsynonymous SNV NM_172800:c.A1997C:p.Q666P exonic Sdk2 nonsynonymous SNV uc007mfe.1:c.A1997C:p.Q666P exonic ENSMUSG00000041592 nonsynonymous SNV ENSMUST00000041627:c.A1997C:p.Q666P 11qE2 NA NA chr11 113718000 AACxGGT T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 172 0 0 15.274892 0.126582 0.02 0.904824 69 10 1843 235 60 60 0 0 TT 21.645822 72 0 1968 0 KEEP - Sdk2 NO MNNG_4 chr11 115105393 115105393 C T exonic Tmem104 synonymous SNV NM_001033393:c.C1440T:p.S480S exonic Tmem104 synonymous SNV uc007mgv.2:c.C1440T:p.S480S exonic ENSMUSG00000045980 synonymous SNV ENSMUST00000061450:c.C1440T:p.S480S 11qE2 NA NA chr11 115105393 CTCxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 150 0 0 120.33315 0.575 0.02 0.89591 34 46 953 1221 60 60 0 0 CC 17.448754 58 0 1676 0 KEEP + Tmem104 YES MNNG_4 chr11 115131365 115131365 G A exonic Fdxr nonsynonymous SNV NM_007997:c.C775T:p.P259S exonic Fdxr nonsynonymous SNV uc007mgy.1:c.C775T:p.P259S exonic ENSMUSG00000018861 nonsynonymous SNV ENSMUST00000021078:c.C775T:p.P259S 11qE2 NA NA chr11 115131365 AAGxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 68 0 0 39.541465 0.6 0.02 -0.219201 10 15 281 397 70 70 0 0 GG 9.62646 32 0 914 0 KEEP - Fdxr YES MNNG_4 chr11 116017299 116017299 G A exonic Fbf1 nonsynonymous SNV NM_172571:c.C496T:p.L166F exonic Fbf1 nonsynonymous SNV uc011yht.1:c.C448T:p.L150F exonic ENSMUSG00000020776 nonsynonymous SNV ENSMUST00000106435:c.C496T:p.L166F 11qE2 NA NA chr11 116017299 GAAxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999999 78 0 0 26.152777 0.458333 0.02 -0.210397 13 11 360 281 60 60 0 0 GG 10.527179 35 0 985 0 KEEP - Fbf1 YES MNNG_4 chr11 116158041 116158041 C T intronic Exoc7 NA NA UTR5 Exoc7 NA NA intronic ENSMUSG00000020792 NA NA 11qE2 NA NA chr11 116158041 ACTxACC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 384 2 0 248.838112 0.572254 0.02 3.276392 74 99 1985 2530 60 60 0 0 CC 42.106707 140 0 3973 0 KEEP - Exoc7 YES MNNG_4 chr11 116306355 116306355 C T exonic Qrich2 nonsynonymous SNV NM_001033267:c.G1066A:p.V356I exonic Qrich2 nonsynonymous SNV uc007mlc.1:c.G1066A:p.V356I exonic ENSMUSG00000070331 nonsynonymous SNV ENSMUST00000093909:c.G1066A:p.V356I 11qE2 NA NA chr11 116306355 GGAxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 204 0 0 109.48192 0.483871 0.02 0.676068 48 45 1273 1160 60 60 0 0 CC 23.459688 78 0 2142 0 KEEP - Qrich2 YES MNNG_4 chr11 116546384 116546384 C T intronic St6galnac2 NA NA intronic St6galnac2 NA NA intronic ENSMUSG00000057286 NA NA 11qE2 NA NA chr11 116546384 CACxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999998 86 0 0 80.639756 0.674419 0.02 -0.385796 14 29 382 786 60 60 0 0 CC 10.224851 34 0 934 0 KEEP - St6galnac2 YES MNNG_4 chr11 117934297 117934297 T G exonic Dnah17 nonsynonymous SNV NM_001167746:c.A7463C:p.K2488T exonic Dnahc17 nonsynonymous SNV uc007moo.2:c.A7463C:p.K2488T exonic ENSMUSG00000033987 nonsynonymous SNV ENSMUST00000132685:c.A4619C:p.K1540T 11qE2 NA NA chr11 117934297 GACxTCT T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.98794 0.987943 0.999997 95 0 0 16.462744 0.152542 0.02 0.877313 50 9 1330 231 60 60 0 0 TT 9.323836 31 0 854 0 KEEP - Dnah17 NO MNNG_4 chr11 118271363 118271363 G A intronic Cant1 NA NA intronic Cant1 NA NA intronic ENSMUSG00000025575 NA NA 11qE2 NA NA chr11 118271363 TCAxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 79 0 0 15.837492 0.333333 0.02 -0.183986 14 7 379 183 60 60 0 0 GG 14.428134 48 0 1368 0 KEEP - Cant1 YES MNNG_4 chr11 119303035 119303035 C T intergenic "Mir1932(dist=51160),Endov(dist=49626)" NA NA intergenic "Rnf213(dist=11417),BC075659(dist=19480)" NA NA exonic ENSMUSG00000070327 synonymous SNV ENSMUST00000131035:c.C7755T:p.F2585F 11qE2 NA NA chr11 119303035 GTTxATG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 167 4 0 129.053351 0.542553 0.02 0.77323 43 51 1195 1329 60 60 0 0 CC 17.442155 58 0 1645 0 KEEP NA Mir1932 YES MNNG_4 chr11 119777420 119777420 C T exonic Chmp6 nonsynonymous SNV NM_001085498:c.C343T:p.H115Y exonic Chmp6 nonsynonymous SNV uc007mrd.2:c.C343T:p.H115Y exonic ENSMUSG00000025371 nonsynonymous SNV ENSMUST00000026434:c.C343T:p.H115Y 11qE2 NA NA chr11 119777420 ATGxACC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 40 0 0 24.660377 0.588235 0.02 -0.149022 7 10 195 249 60 60 0 0 CC 4.211692 14 0 404 0 KEEP + Chmp6 YES MNNG_4 chr11 119869738 119869738 C T exonic Aatk nonsynonymous SNV NM_001198785:c.G4105A:p.G1369S exonic Aatk nonsynonymous SNV uc007mrl.2:c.G3934A:p.G1312S exonic ENSMUSG00000025375 nonsynonymous SNV ENSMUST00000064307:c.G4105A:p.G1369S 11qE2 NA NA chr11 119869738 GGCxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999998 75 0 0 40.201729 0.571429 0.02 -0.245292 12 16 325 409 60 60 0 0 CC 10.206987 34 0 906 0 KEEP - Aatk YES MNNG_4 chr11 119971523 119971523 C T exonic Slc38a10 nonsynonymous SNV NM_001164798:c.G1784A:p.G595E exonic Slc38a10 nonsynonymous SNV uc011yiw.1:c.G314A:p.G105E exonic ENSMUSG00000061306 nonsynonymous SNV ENSMUST00000045402:c.G1784A:p.G595E 11qE2 NA NA chr11 119971523 TTTxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 121 0 0 99.110902 0.567164 0.02 1.001201 29 38 792 1009 60 60 0 0 CC 12.93388 43 0 1213 0 KEEP - Slc38a10 YES MNNG_4 chr11 120440593 120440593 G A exonic Arhgdia synonymous SNV NM_133796:c.C567T:p.H189H exonic Arhgdia synonymous SNV uc007mtj.1:c.C567T:p.H189H exonic ENSMUSG00000025132 synonymous SNV ENSMUST00000067936:c.C567T:p.H189H 11qE2 "Score=0.912679;Name=No.15732,chr6:98225510" NA chr11 120440593 CAGxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 156 0 0 48.085802 0.344262 0.02 1.063522 40 21 1061 551 60 60 0 0 GG 21.036849 70 0 1906 0 KEEP - Arhgdia YES MNNG_4 chr11 120671294 120671294 G A exonic Fasn nonsynonymous SNV NM_007988:c.C6212T:p.T2071I exonic Fasn nonsynonymous SNV uc007mut.1:c.C6212T:p.T2071I exonic ENSMUSG00000025153 nonsynonymous SNV ENSMUST00000055655:c.C6212T:p.T2071I 11qE2 NA NA chr11 120671294 ACTxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 150 0 0 80.803866 0.409091 0.02 0.728574 52 36 1425 895 60 60 0 0 GG 15.942785 53 0 1499 0 KEEP - Fasn YES MNNG_4 chr11 120763326 120763326 G A exonic Ccdc57 synonymous SNV NM_027745:c.C915T:p.A305A exonic Ccdc57 synonymous SNV uc007muv.1:c.C915T:p.A305A exonic ENSMUSG00000048445 synonymous SNV ENSMUST00000056781:c.C915T:p.A305A 11qE2 NA NA chr11 120763326 ATGxGCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 69 2 0 23.644706 0.357143 0.02 -0.245509 18 10 493 268 60 60 0 0 GG 9.321616 31 0 846 0 KEEP - Ccdc57 YES MNNG_4 chr11 121113951 121113951 C T intronic Narf NA NA intronic Narf NA NA intronic ENSMUSG00000000056 NA NA 11qE2 NA NA chr11 121113951 TGAxAGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.351366 0.353947 0.992708 34 0 0 21.081341 0.473684 0.02 -0.166548 10 9 262 225 60 60 0 0 CC 3.007771 10 0 277 0 KEEP + Narf YES MNNG_4 chr11 12149741 12149741 C T exonic Cobl nonsynonymous SNV NM_001282993:c.G3833A:p.S1278N exonic Cobl nonsynonymous SNV uc011xrp.1:c.G2261A:p.S754N exonic ENSMUSG00000020173 nonsynonymous SNV ENSMUST00000109650:c.G3662A:p.S1221N 11qA1 NA NA chr11 12149741 GTGxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 123 0 0 45.182087 0.363636 0.02 1.11521 35 20 942 513 60 60 0 0 CC 14.715342 49 0 1359 0 KEEP - Cobl YES MNNG_4 chr11 17092943 17092943 C T intronic Ppp3r1 NA NA UTR5 Ppp3r1 NA NA intronic ENSMUSG00000033953 NA NA 11qA2 NA NA chr11 17092943 TTTxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.99986 32 0 0 18.504569 0.636364 0.02 -0.096432 4 7 106 183 60 60 0 0 CC 5.714578 19 0 530 0 KEEP + Ppp3r1 YES MNNG_4 chr11 21956615 21956615 C T exonic Ehbp1 nonsynonymous SNV NM_001252515:c.G3110A:p.R1037K exonic Ehbp1 nonsynonymous SNV uc007iea.1:c.G3035A:p.R1012K exonic ENSMUSG00000042302 nonsynonymous SNV ENSMUST00000045167:c.G3035A:p.R1012K 11qA3.2 NA NA chr11 21956615 GATxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 163 0 0 86.041289 0.492754 0.02 0.992346 35 34 971 906 60 60 0 0 CC 21.059127 70 0 2028 0 KEEP - Ehbp1 YES MNNG_4 chr11 23352038 23352038 C T exonic Usp34 nonsynonymous SNV NM_001190401:c.C7267T:p.P2423S exonic "Usp34,mKIAA0570" nonsynonymous SNV uc007iez.1:c.C184T:p.P62S exonic ENSMUSG00000056342 nonsynonymous SNV ENSMUST00000130131:c.C1990T:p.P664S 11qA3.2 NA NA chr11 23352038 AGAxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.976863 0.976865 0.999998 122 0 0 55.477812 0.418182 0.02 1.019147 32 23 848 607 60 60 0 0 CC 14.135578 47 0 1299 0 KEEP + Usp34 YES MNNG_4 chr11 23418135 23418135 C T exonic 1700093K21Rik nonsynonymous SNV NM_001110133:c.G157A:p.G53S exonic 1700093K21Rik nonsynonymous SNV uc007ife.1:c.G157A:p.G53S exonic ENSMUSG00000020286 nonsynonymous SNV ENSMUST00000020527:c.G157A:p.G53S 11qA3.2 NA NA chr11 23418135 GACxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 203 1 0 106.309024 0.546667 0.02 1.037633 34 41 945 1092 60 60 0 0 CC 31.585576 105 0 2998 0 KEEP - 1700093K21Rik YES MNNG_4 chr11 23985574 23985574 C T exonic Bcl11a synonymous SNV NM_001159289:c.C309T:p.I103I exonic Bcl11a synonymous SNV uc007ifs.2:c.C309T:p.I103I exonic ENSMUSG00000000861 synonymous SNV ENSMUST00000000881:c.C309T:p.I103I 11qA3.2 NA NA chr11 23985574 CATxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 48 0 0 36.024903 0.56 0.02 -0.219191 11 14 304 368 60 60 0 0 CC 6.309049 21 0 566 0 KEEP + Bcl11a YES MNNG_4 chr11 29430020 29430020 C T exonic Mtif2 nonsynonymous SNV NM_001282118:c.C85T:p.L29F exonic Mtif2 nonsynonymous SNV uc007ihc.1:c.C85T:p.L29F exonic ENSMUSG00000020459 nonsynonymous SNV ENSMUST00000020749:c.C85T:p.L29F 11qA3.3 NA NA chr11 29430020 AGAxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 59 2 0 30.436188 0.545455 0.02 -0.192883 10 12 274 313 60 60 0 0 CC 7.519725 25 0 699 0 KEEP + Mtif2 YES MNNG_4 chr11 29607129 29607129 C T exonic Rtn4 nonsynonymous SNV NM_194051:c.C934T:p.P312S exonic Rtn4 nonsynonymous SNV uc007ihk.2:c.C1282T:p.P428S exonic ENSMUSG00000020458 nonsynonymous SNV ENSMUST00000102841:c.C934T:p.P312S 11qA3.3 NA NA chr11 29607129 TTCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 249 1 0 120.328329 0.489583 0.02 0.853695 49 47 1322 1268 60 60 0 0 CC 32.484107 108 0 3003 0 KEEP + Rtn4 YES MNNG_4 chr11 30672167 30672167 C T exonic Psme4 nonsynonymous SNV NM_134013:c.C185T:p.A62V exonic Psme4 nonsynonymous SNV uc007ihx.1:c.C185T:p.A62V exonic ENSMUSG00000040850 nonsynonymous SNV ENSMUST00000041231:c.C185T:p.A62V 11qA4 NA NA chr11 30672167 GGGxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 130 2 0 60.384329 0.520833 0.02 -0.420614 23 25 603 629 60 60 0 0 CC 18.928594 63 0 1709 0 KEEP + Psme4 YES MNNG_4 chr11 3401015 3401015 C T intronic Inpp5j NA NA intronic Inpp5j NA NA intronic ENSMUSG00000034570 NA NA 11qA1 NA NA chr11 3401015 GACxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 110 0 0 62.979423 0.571429 0.02 -0.368212 18 24 494 640 60 60 0 0 CC 15.039294 50 0 1392 0 KEEP - Inpp5j YES MNNG_4 chr11 35443311 35443311 A T exonic Slit3 nonsynonymous SNV NM_011412:c.A1772T:p.N591I exonic Slit3 nonsynonymous SNV uc007ild.2:c.A1772T:p.N591I exonic ENSMUSG00000056427 nonsynonymous SNV ENSMUST00000069837:c.A1772T:p.N591I 11qA4 NA NA chr11 35443311 GGAxCCA A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 145 2 0 7.189301 0.078125 0.02 0.842524 59 5 1509 124 60 60 0 0 AA 18.042527 60 0 1626 0 KEEP + Slit3 NO MNNG_4 chr11 35513799 35513799 A C exonic Slit3 nonsynonymous SNV NM_011412:c.A3935C:p.N1312T exonic Slit3 nonsynonymous SNV uc007ild.2:c.A3935C:p.N1312T exonic ENSMUSG00000056427 nonsynonymous SNV ENSMUST00000069837:c.A3935C:p.N1312T 11qA4 NA NA chr11 35513799 TCAxCAA A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.736227 0.739671 0.995343 50 0 0 37.24688 0.46875 0.02 -0.280533 17 15 446 397 60 60 0 0 AA 4.207908 14 0 366 0 KEEP + Slit3 NO MNNG_4 chr11 3580240 3580240 C T exonic Morc2a nonsynonymous SNV NM_198162:c.C1246T:p.P416S exonic Morc2a nonsynonymous SNV uc007htn.1:c.C1246T:p.P416S exonic ENSMUSG00000034543 nonsynonymous SNV ENSMUST00000096441:c.C1432T:p.P478S 11qA1 NA NA chr11 3580240 CAAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 84 0 0 45.740644 0.44186 0.02 -0.377002 24 19 656 495 60 60 0 0 CC 10.220448 34 0 923 0 KEEP + Morc2a YES MNNG_4 chr11 35838332 35838332 A C exonic Tenm2 nonsynonymous SNV NM_011856:c.T5876G:p.V1959G exonic Odz2 nonsynonymous SNV uc011xtd.1:c.T5783G:p.V1928G exonic ENSMUSG00000049336 nonsynonymous SNV ENSMUST00000109310:c.T5783G:p.V1928G 11qA4 NA NA chr11 35838332 GCGxCAC A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888814 0.888875 0.999931 73 1 0 7.269049 0.1 0.02 -0.350637 36 4 922 110 60 60 0 0 AA 7.51498 25 0 664 0 KEEP - Tenm2 NO MNNG_4 chr11 3584645 3584645 C T exonic Morc2a nonsynonymous SNV NM_198162:c.C2030T:p.A677V exonic Morc2a nonsynonymous SNV uc007htn.1:c.C2030T:p.A677V exonic ENSMUSG00000034543 nonsynonymous SNV ENSMUST00000096441:c.C2216T:p.A739V 11qA1 NA NA chr11 3584645 TTGxAGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 99 0 0 66.324039 0.55102 0.02 -0.438306 22 27 602 681 60 60 0 0 CC 12.031465 40 0 1118 0 KEEP + Morc2a YES MNNG_4 chr11 36020576 36020576 C T exonic Tenm2 nonsynonymous SNV NM_011856:c.G1346A:p.G449D exonic "Odz2,ten-m2" nonsynonymous SNV uc007ilm.1:c.G890A:p.G297D exonic ENSMUSG00000049336 nonsynonymous SNV ENSMUST00000109310:c.G1223A:p.G408D 11qA4 NA NA chr11 36020576 TCGxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 150 3 0 76.614805 0.508197 0.02 0.956444 30 31 823 802 60 60 0 0 CC 19.250849 64 0 1793 0 KEEP - Tenm2 YES MNNG_4 chr11 3611672 3611672 C T intronic Osbp2 NA NA intronic Osbp2 NA NA intronic ENSMUSG00000020435 NA NA 11qA1 NA NA chr11 3611672 AGAxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 71 0 0 34.002789 0.405405 0.02 -0.324344 22 15 579 377 60 60 0 0 CC 8.418372 28 0 746 0 KEEP - Osbp2 YES MNNG_4 chr11 3617165 3617165 C T exonic Osbp2 synonymous SNV NM_152818:c.G1347A:p.E449E exonic Osbp2 synonymous SNV uc011xqr.1:c.G114A:p.E38E exonic ENSMUSG00000020435 synonymous SNV ENSMUST00000101632:c.G114A:p.E38E 11qA1 NA NA chr11 3617165 GTAxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.990964 0.990964 1 135 2 0 62.985722 0.419355 0.02 1.053725 36 26 997 689 60 60 0 0 CC 16.545504 55 0 1576 0 KEEP - Osbp2 YES MNNG_4 chr11 3994499 3994499 C T exonic Mtfp1 nonsynonymous SNV NM_026443:c.G88A:p.E30K exonic Mtfp1 nonsynonymous SNV uc007hug.1:c.G88A:p.E30K exonic ENSMUSG00000004748 nonsynonymous SNV ENSMUST00000004868:c.G88A:p.E30K 11qA1 NA NA chr11 3994499 CCTxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 37 0 0 16.13905 0.411765 0.02 -0.148919 10 7 259 178 60 60 0 0 CC 4.450192 15 0 402 0 KEEP - Mtfp1 YES MNNG_4 chr11 4120434 4120434 C T exonic Gatsl3 synonymous SNV NM_028022:c.C426T:p.I142I exonic Gatsl3 synonymous SNV uc007hur.1:c.C426T:p.I142I exonic ENSMUSG00000020424 synonymous SNV ENSMUST00000020699:c.C426T:p.I142I 11qA1 NA NA chr11 4120434 AATxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 69 0 0 49.086078 0.542857 0.02 -0.306718 16 19 422 505 60 60 0 0 CC 8.66147 29 0 797 0 KEEP + Gatsl3 YES MNNG_4 chr11 43014615 43014615 C T intronic Atp10b NA NA intronic Atp10b NA NA ncRNA_intronic ENSMUSG00000085533 NA NA 11qA5 NA NA chr11 43014615 TGTxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 73 0 0 46.604776 0.545455 0.02 -0.289332 15 18 413 479 60 60 0 0 CC 9.0253 30 0 869 0 KEEP + Atp10b YES MNNG_4 chr11 43558667 43558667 C T exonic Ttc1 nonsynonymous SNV NM_133795:c.G250A:p.A84T exonic Ttc1 nonsynonymous SNV uc007imx.1:c.G250A:p.A84T exonic ENSMUSG00000041278 nonsynonymous SNV ENSMUST00000048578:c.G250A:p.A84T 11qB1.1 NA NA chr11 43558667 TGGxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 141 0 0 91.038992 0.580645 0.02 1.045073 26 36 708 922 60 60 0 0 CC 17.14096 57 0 1570 0 KEEP - Ttc1 YES MNNG_4 chr11 4530037 4530037 C T upstream Gm11961 NA NA upstream Gm11961 NA NA upstream ENSMUSG00000056288 NA NA 11qA1 NA NA chr11 4530037 CTTxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 151 0 0 64.111674 0.415385 0.02 1.027477 38 27 1038 704 60 60 0 0 CC 21.04543 70 0 1941 0 KEEP - Gm11961 YES MNNG_4 chr11 46072148 46072148 C T intronic Cyfip2 NA NA intronic Cyfip2 NA NA intronic ENSMUSG00000020340 NA NA 11qB1.1 NA NA chr11 46072148 CACxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 97 2 0 62.87579 0.545455 0.02 -0.385791 20 24 547 646 60 60 0 0 CC 11.683967 39 0 1053 0 KEEP - Cyfip2 YES MNNG_4 chr11 4682319 4682319 C T exonic Nf2 synonymous SNV NM_001252250:c.G1611A:p.E537E exonic Nf2 synonymous SNV uc007hvf.1:c.G1611A:p.E537E exonic ENSMUSG00000009073 synonymous SNV ENSMUST00000166058:c.G1077A:p.E359E 11qA1 NA NA chr11 4682319 CTGxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 89 0 0 35.603775 0.405405 0.02 -0.32441 22 15 606 393 60 60 0 0 CC 12.92289 43 0 1201 0 KEEP - Nf2 YES MNNG_4 chr11 48679701 48679701 C T exonic Irgm1 nonsynonymous SNV NM_008326:c.G832A:p.V278I exonic Irgm1 nonsynonymous SNV uc007ipg.1:c.G832A:p.V278I exonic ENSMUSG00000046879 nonsynonymous SNV ENSMUST00000097271:c.G784A:p.V262I 11qB1.2 NA NA chr11 48679701 AGAxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 155 0 0 69.733261 0.410959 0.02 0.86003 43 30 1160 769 60 60 0 0 CC 21.356285 71 0 1989 0 KEEP - Irgm1 YES MNNG_4 chr11 48883753 48883753 C T intronic Olfr56 NA NA intronic Olfr56 NA NA ncRNA_exonic ENSMUSG00000083178 NA NA 11qB1.2 "Score=0.929308;Name=No.12938,chr11:48724729" NA chr11 48883753 GACxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 228 0 0 132.939827 0.456897 0.02 2.177591 63 53 1738 1424 60 60 0 0 CC 27.364956 91 0 2546 0 KEEP + Olfr56 YES MNNG_4 chr11 48927033 48927033 C T exonic Olfr1396 nonsynonymous SNV NM_146337:c.G227A:p.S76N exonic Olfr1396 nonsynonymous SNV uc007ipr.1:c.G227A:p.S76N exonic ENSMUSG00000047511 nonsynonymous SNV ENSMUST00000060398:c.G227A:p.S76N 11qB1.2 NA NA chr11 48927033 TGAxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 140 0 0 50.099538 0.487805 0.02 -0.35944 21 20 564 529 60 60 0 0 CC 25.260915 84 0 2345 0 KEEP - Olfr1396 YES MNNG_4 chr11 48988343 48988343 C T exonic Btnl9 nonsynonymous SNV NM_172793:c.G883A:p.G295R exonic Btnl9 nonsynonymous SNV uc007ipu.1:c.G883A:p.G295R exonic ENSMUSG00000040283 nonsynonymous SNV ENSMUST00000153999:c.G601A:p.G201R 11qB1.2 NA NA chr11 48988343 CTCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 119 0 0 34.542826 0.326087 0.02 -0.403348 31 15 860 400 60 60 0 0 CC 15.939915 53 0 1473 0 KEEP - Btnl9 YES MNNG_4 chr11 49494700 49494700 C T exonic Cnot6 nonsynonymous SNV NM_212484:c.G955A:p.D319N exonic Cnot6 nonsynonymous SNV uc007iqy.1:c.G397A:p.D133N exonic ENSMUSG00000020362 nonsynonymous SNV ENSMUST00000020624:c.G955A:p.D319N 11qB1.2 NA NA chr11 49494700 TATxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865735 0.865745 0.999988 73 0 0 35.568461 0.384615 0.02 -0.341962 24 15 667 397 60 60 0 0 CC 8.122162 27 0 768 0 KEEP - Cnot6 YES MNNG_4 chr11 49770609 49770609 C T exonic Rasgef1c nonsynonymous SNV NM_029004:c.C68T:p.S23F exonic Rasgef1c nonsynonymous SNV uc007irj.1:c.C68T:p.S23F exonic ENSMUSG00000020374 nonsynonymous SNV ENSMUST00000063444:c.C77T:p.S26F 11qB1.3 NA NA chr11 49770609 AATxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 78 0 0 44.692159 0.461538 0.02 -0.3504 21 18 580 478 60 60 0 0 CC 9.324796 31 0 875 0 KEEP + Rasgef1c YES MNNG_4 chr11 49783036 49783036 C T exonic Rasgef1c synonymous SNV NM_029004:c.C843T:p.F281F exonic Rasgef1c synonymous SNV uc011xue.1:c.C720T:p.F240F exonic ENSMUSG00000020374 synonymous SNV ENSMUST00000093141:c.C720T:p.F240F 11qB1.3 NA NA chr11 49783036 GTTxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 164 0 0 66.535356 0.435484 0.02 1.053716 35 27 974 721 60 60 0 0 CC 22.85931 76 0 2154 0 KEEP + Rasgef1c YES MNNG_4 chr11 5004171 5004171 C T exonic Rhbdd3 nonsynonymous SNV NM_177370:c.C296T:p.A99V exonic Rhbdd3 nonsynonymous SNV uc007hwe.1:c.C296T:p.A99V exonic ENSMUSG00000034175 nonsynonymous SNV ENSMUST00000109878:c.C296T:p.A99V 11qA1 NA NA chr11 5004171 TGGxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997552 0.997553 0.999999 120 0 0 74.054343 0.43662 0.02 1.063986 40 31 1090 804 60 60 0 0 CC 10.797451 36 0 972 0 KEEP + Rhbdd3 YES MNNG_4 chr11 50605309 50605309 C T exonic Adamts2 synonymous SNV NM_001277305:c.C2625T:p.S875S exonic Adamts2 synonymous SNV uc007isp.1:c.C2079T:p.S693S exonic ENSMUSG00000036545 synonymous SNV ENSMUST00000040523:c.C2625T:p.S875S 11qB1.3 NA NA chr11 50605309 GTCxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 284 5 0 121.122357 0.51087 0.02 0.879789 45 47 1240 1264 60 60 0 0 CC 38.73694 129 0 3526 0 KEEP + Adamts2 YES MNNG_4 chr11 50782743 50782743 C T exonic Olfr1378 synonymous SNV NM_146910:c.C222T:p.S74S exonic Olfr1378 synonymous SNV uc007ith.1:c.C222T:p.S74S exonic ENSMUSG00000050343 synonymous SNV ENSMUST00000052285:c.C222T:p.S74S 11qB1.3 NA NA chr11 50782743 TTCxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 554 3 0 377.216054 0.577236 0.02 4.197653 104 142 2891 3823 60 60 0 0 CC 70.979781 236 0 6695 0 KEEP + Olfr1378 YES MNNG_4 chr11 51419056 51419056 C T exonic Hnrnpab synonymous SNV NM_001048061:c.G300A:p.E100E exonic Hnrnpab synonymous SNV uc007itz.1:c.G300A:p.E100E exonic ENSMUSG00000020358 synonymous SNV ENSMUST00000074669:c.G300A:p.E100E 11qB1.3 NA NA chr11 51419056 AACxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 127 1 0 59.536431 0.428571 0.02 1.204194 32 24 885 647 60 60 0 0 CC 19.25209 64 0 1814 0 KEEP - Hnrnpab YES MNNG_4 chr11 51548046 51548046 C T intronic Sec24a NA NA intronic Sec24a NA NA intronic ENSMUSG00000036391 NA NA 11qB1.3 NA NA chr11 51548046 TTGxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.320996 0.322807 0.994391 35 0 0 24.388542 0.555556 0.02 -0.157736 8 10 216 250 60 60 0 0 CC 3.909974 13 0 357 0 KEEP - Sec24a YES MNNG_4 chr11 5181645 5181645 C T exonic Znrf3 nonsynonymous SNV NM_001080924:c.G1870A:p.G624S exonic Znrf3 nonsynonymous SNV uc007hwj.2:c.G1870A:p.G624S exonic ENSMUSG00000041961 nonsynonymous SNV ENSMUST00000109867:c.G1870A:p.G624S 11qA1 NA NA chr11 5181645 CGCxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979523 0.979526 0.999997 91 0 0 60.296665 0.446429 0.02 1.106435 31 25 845 651 60 60 0 0 CC 9.023171 30 0 831 0 KEEP - Znrf3 YES MNNG_4 chr11 52050400 52050400 C T exonic Skp1a nonsynonymous SNV NM_011543:c.C62T:p.A21V exonic Skp1a nonsynonymous SNV uc007ivf.2:c.C62T:p.A21V exonic ENSMUSG00000036309 nonsynonymous SNV ENSMUST00000116595:c.C35T:p.A12V 11qB1.3 NA NA chr11 52050400 TTGxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 521 0 0 241.139199 0.497436 0.02 2.985066 98 97 2672 2536 60 60 0 0 CC 73.051698 243 0 6689 0 KEEP + Skp1a YES MNNG_4 chr11 52210064 52210064 C T exonic 9530068E07Rik nonsynonymous SNV NM_153117:c.C95T:p.S32F exonic 9530068E07Rik nonsynonymous SNV uc007ivn.1:c.C95T:p.S32F exonic ENSMUSG00000036275 nonsynonymous SNV ENSMUST00000036952:c.C95T:p.S32F 11qB1.3 NA NA chr11 52210064 GATxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.57966 0.58293 0.994391 42 0 0 36.382115 0.538462 0.02 -0.227949 12 14 326 375 60 60 0 0 CC 3.911018 13 0 377 0 KEEP + 9530068E07Rik YES MNNG_4 chr11 53213286 53213286 C T exonic Aff4 nonsynonymous SNV NM_033565:c.C1570T:p.P524S exonic Aff4 nonsynonymous SNV uc011xuq.1:c.C1483T:p.P495S exonic ENSMUSG00000049470 nonsynonymous SNV ENSMUST00000167934:c.C1483T:p.P495S 11qB1.3 NA NA chr11 53213286 ACCxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.999859 52 0 0 31.953149 0.5 0.02 -0.227786 13 13 362 336 60 60 0 0 CC 5.368524 18 0 482 0 KEEP + Aff4 YES MNNG_4 chr11 53406951 53406951 C T exonic Kif3a nonsynonymous SNV NM_008443:c.C1310T:p.T437I exonic Kif3a nonsynonymous SNV uc007iwn.1:c.C1301T:p.T434I exonic ENSMUSG00000018395 nonsynonymous SNV ENSMUST00000057330:c.C1301T:p.T434I 11qB1.3 NA NA chr11 53406951 AAAxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717285 0.717315 0.999957 62 0 0 45.321524 0.580645 0.02 -0.271728 13 18 342 459 60 60 0 0 CC 7.820001 26 0 717 0 KEEP + Kif3a YES MNNG_4 chr11 53587422 53587422 C T intronic Irf1 NA NA intronic Irf1 NA NA intronic ENSMUSG00000018899 NA NA 11qB1.3 NA NA chr11 53587422 TTCxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 140 2 0 77.057792 0.484375 0.02 1.037441 33 31 866 815 60 60 0 0 CC 15.942607 53 0 1495 0 KEEP + Irf1 YES MNNG_4 chr11 53589888 53589888 C T exonic Irf1 synonymous SNV NM_001159396:c.C930T:p.S310S exonic Irf1 synonymous SNV uc007iwx.2:c.C837T:p.S279S exonic ENSMUSG00000018899 synonymous SNV ENSMUST00000169660:c.C837T:p.S279S 11qB1.3 NA NA chr11 53589888 CAGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 153 0 0 99.185144 0.540541 0.02 0.939889 34 40 927 1023 60 60 0 0 CC 17.723266 59 0 1599 0 KEEP + Irf1 YES MNNG_4 chr11 54136837 54136837 G T exonic Acsl6 nonsynonymous SNV NM_001033597:c.G365T:p.R122L exonic Acsl6 nonsynonymous SNV uc007ixo.1:c.G290T:p.R97L exonic ENSMUSG00000020333 nonsynonymous SNV ENSMUST00000108900:c.G185T:p.R62L 11qB1.3 NA NA chr11 54136837 TCCxCCG G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 136 0 0 77.261847 0.457143 0.02 1.073495 38 32 967 830 60 60 0 0 GG 14.128913 47 0 1230 0 KEEP + Acsl6 NO MNNG_4 chr11 54141897 54141897 T A intronic Acsl6 NA NA intronic Acsl6 NA NA intronic ENSMUSG00000020333 NA NA 11qB1.3 NA NA chr11 54141897 TTTxCTT T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 51 0 0 23.744716 0.5 0.02 -0.175318 10 10 265 250 60 60 0 0 TT 7.197272 24 0 635 0 KEEP + Acsl6 NO MNNG_4 chr11 54141898 54141898 C T intronic Acsl6 NA NA intronic Acsl6 NA NA intronic ENSMUSG00000020333 NA NA 11qB1.3 NA NA chr11 54141898 TTTxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 51 0 0 24.34492 0.5 0.02 -0.175346 10 10 278 256 60 60 0 0 CC 7.203431 24 0 644 0 KEEP + Acsl6 YES MNNG_4 chr11 5616221 5616221 C T exonic Urgcp nonsynonymous SNV NM_001077661:c.G2119A:p.V707I exonic Urgcp nonsynonymous SNV uc007hww.1:c.G2119A:p.V707I exonic ENSMUSG00000049680 nonsynonymous SNV ENSMUST00000171028:c.G2158A:p.V720I 11qA1 NA NA chr11 5616221 TTAxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999998 87 1 0 55.142759 0.5 0.02 -0.38576 22 22 593 579 60 60 0 0 CC 10.221961 34 0 928 0 KEEP - Urgcp YES MNNG_4 chr11 58322732 58322732 T G intergenic "Olfr331(dist=6676),Olfr330(dist=19699)" NA NA intergenic "Olfr331(dist=6676),Olfr330(dist=19699)" NA NA ncRNA_exonic ENSMUSG00000085342 NA NA 11qB1.3 "Score=0.91691;Name=No.12973,chr11:58341807" NA chr11 58322732 ATCxTGT T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835658 0.835716 0.999931 68 0 2 43.847164 0.486486 0.02 -0.324362 19 18 508 464 60 60 0 0 TT 7.820571 26 0 726 0 KEEP NA Olfr331 NO MNNG_4 chr11 58365234 58365234 C T exonic Olfr328 nonsynonymous SNV NM_146502:c.G506A:p.G169E exonic Olfr328 nonsynonymous SNV uc007jbt.1:c.G506A:p.G169E exonic ENSMUSG00000057654 nonsynonymous SNV ENSMUST00000073933:c.G506A:p.G169E 11qB1.3 "Score=0.931324;Name=No.12977,chr11:58356045" NA chr11 58365234 GATxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 209 1 11 117.71779 0.489583 0.02 0.649563 49 47 1354 1242 60 60 0 0 CC 25.835317 86 0 2413 0 KEEP - Olfr328 YES MNNG_4 chr11 58592267 58592267 C T exonic Olfr315 nonsynonymous SNV NM_146538:c.C637T:p.L213F exonic Olfr315 nonsynonymous SNV uc007jcf.2:c.C637T:p.L213F exonic ENSMUSG00000056959 nonsynonymous SNV ENSMUST00000081533:c.C637T:p.L213F 11qB1.3 NA NA chr11 58592267 TCCxTCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.98954 0.989542 0.999997 101 0 0 86.32683 0.559322 0.02 1.063865 26 33 697 881 60 60 0 0 CC 8.722755 29 0 811 0 KEEP + Olfr315 YES MNNG_4 chr11 58600128 58600128 C T exonic Olfr314 nonsynonymous SNV NM_001011760:c.C391T:p.P131S exonic Olfr314 nonsynonymous SNV uc007jch.2:c.C391T:p.P131S exonic ENSMUSG00000059504 nonsynonymous SNV ENSMUST00000076393:c.C391T:p.P131S 11qB1.3 NA NA chr11 58600128 TATxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 151 1 0 103.33986 0.56338 0.02 0.868722 31 40 860 1054 60 60 0 0 CC 18.887918 63 0 1750 0 KEEP + Olfr314 YES MNNG_4 chr11 58826272 58826272 C T exonic Obscn synonymous SNV NM_199152:c.G22377A:p.G7459G exonic Obscn synonymous SNV uc007jdc.2:c.G2574A:p.G858G exonic ENSMUSG00000061462 synonymous SNV ENSMUST00000052872:c.G22359A:p.G7453G 11qB1.3 NA NA chr11 58826272 GCTxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979524 0.979526 0.999997 96 0 0 61.101299 0.446429 0.02 1.009 31 25 859 659 60 60 0 0 CC 9.325376 31 0 881 0 KEEP - Obscn YES MNNG_4 chr11 5890392 5890392 C T exonic Camk2b nonsynonymous SNV NM_001174053:c.G448A:p.G150S exonic Camk2b nonsynonymous SNV uc007hxq.2:c.G61A:p.G21S exonic ENSMUSG00000057897 nonsynonymous SNV ENSMUST00000169173:c.G61A:p.G21S 11qA1 NA NA chr11 5890392 CGCxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 98 2 0 50.621008 0.456522 0.02 -0.403069 25 21 685 544 60 60 0 0 CC 11.732029 39 0 1114 0 KEEP - Camk2b YES MNNG_4 chr11 58938117 58938117 C T exonic Obscn synonymous SNV NM_001171512:c.G3030A:p.R1010R exonic Obscn synonymous SNV uc007jdb.2:c.G3030A:p.R1010R exonic ENSMUSG00000061462 synonymous SNV ENSMUST00000047441:c.G3030A:p.R1010R 11qB1.3 NA NA chr11 58938117 CCTxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 330 2 1 149.434626 0.424658 0.02 1.79973 84 62 2308 1631 60 60 0 0 CC 44.516427 148 0 4172 0 KEEP - Obscn YES MNNG_4 chr11 59220739 59220739 C T UTR3 Snap47 NA NA UTR3 Snap47 NA NA UTR3 ENSMUSG00000009894 NA NA 11qB1.3 NA NA chr11 59220739 CTAxAGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 127 0 0 49.565127 0.415094 0.02 0.929948 31 22 841 547 60 60 0 0 CC 15.04026 50 0 1415 0 KEEP - Snap47 YES MNNG_4 chr11 59476424 59476424 C T exonic Mprip synonymous SNV NM_012027:c.C97T:p.L33L exonic Mprip synonymous SNV uc007jem.2:c.C97T:p.L33L exonic ENSMUSG00000005417 synonymous SNV ENSMUST00000066330:c.C97T:p.L33L 11qB1.3 NA NA chr11 59476424 CATxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 118 0 0 56.482951 0.564103 0.02 -0.341931 17 22 474 576 60 60 0 0 CC 17.748217 59 0 1694 0 KEEP + Mprip YES MNNG_4 chr11 59549488 59549488 A G exonic Mprip nonsynonymous SNV NM_012027:c.A661G:p.S221G exonic Mprip nonsynonymous SNV uc011xvo.1:c.A364G:p.S122G exonic ENSMUSG00000005417 nonsynonymous SNV ENSMUST00000133861:c.A265G:p.S89G 11qB1.3 NA NA chr11 59549488 CTGxGTC A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.194847 0.196312 0.99254 35 0 5 18.524322 0.5 0.02 -0.122752 7 7 185 194 60 60 0 0 AA 4.210997 14 0 390 0 KEEP + Mprip NO MNNG_4 chr11 59549491 59549491 C T exonic Mprip nonsynonymous SNV NM_012027:c.C664T:p.P222S exonic Mprip nonsynonymous SNV uc011xvo.1:c.C367T:p.P123S exonic ENSMUSG00000005417 nonsynonymous SNV ENSMUST00000133861:c.C268T:p.P90S 11qB1.3 NA NA chr11 59549491 AGTxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161255 0.162467 0.99254 34 0 5 17.839733 0.538462 0.02 -0.113982 6 7 167 184 60 60 0 0 CC 4.210899 14 0 393 0 KEEP + Mprip YES MNNG_4 chr11 60002791 60002791 C T exonic Rai1 nonsynonymous SNV NM_001037764:c.C4178T:p.P1393L exonic Rai1 nonsynonymous SNV uc007jfl.1:c.C4178T:p.P1393L exonic ENSMUSG00000062115 nonsynonymous SNV ENSMUST00000090806:c.C4178T:p.P1393L 11qB2 NA NA chr11 60002791 GCCxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 171 2 0 104.875223 0.488095 0.02 0.860864 43 41 1163 1106 60 60 0 0 CC 19.835788 66 0 1822 0 KEEP + Rai1 YES MNNG_4 chr11 60013472 60013472 C T exonic Srebf1 synonymous SNV NM_011480:c.G3357A:p.Q1119Q exonic Srebf1 synonymous SNV uc007jfn.1:c.G3357A:p.Q1119Q exonic ENSMUSG00000020538 synonymous SNV ENSMUST00000020846:c.G3357A:p.Q1119Q 11qB2 NA NA chr11 60013472 CTGxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 124 0 0 67.024866 0.490909 0.02 1.11529 28 27 750 707 60 60 0 0 CC 14.827935 52 1 1471 7 KEEP - Srebf1 YES MNNG_4 chr11 60311331 60311331 T C intronic Myo15 NA NA intronic Myo15 NA NA intronic ENSMUSG00000042678 NA NA 11qB2 NA NA chr11 60311331 GTCxCCA T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 116 0 0 8.546016 0.070423 0.02 0.966553 66 5 1726 140 60 60 0 0 TT 11.056603 37 0 971 0 KEEP + Myo15 NO MNNG_4 chr11 60980218 60980218 C T exonic Usp22 nonsynonymous SNV NM_001004143:c.G373A:p.E125K exonic Usp22 nonsynonymous SNV uc007jhc.2:c.G373A:p.E125K exonic ENSMUSG00000042506 nonsynonymous SNV ENSMUST00000041683:c.G373A:p.E125K 11qB2 NA NA chr11 60980218 TTTxTAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 245 0 0 87.412806 0.409091 0.02 0.816984 52 36 1445 961 60 60 0 0 CC 31.2776 104 0 2987 0 KEEP - Usp22 YES MNNG_4 chr11 60981818 60981818 C T exonic Usp22 nonsynonymous SNV NM_001004143:c.G248A:p.G83D exonic Usp22 nonsynonymous SNV uc007jhc.2:c.G248A:p.G83D exonic ENSMUSG00000042506 nonsynonymous SNV ENSMUST00000041683:c.G248A:p.G83D 11qB2 NA NA chr11 60981818 CAGxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 95 0 0 31.367796 0.333333 0.02 -0.368233 28 14 766 363 60 60 0 0 CC 12.911044 43 0 1160 0 KEEP - Usp22 YES MNNG_4 chr11 61126270 61126270 C T intronic Slc47a2 NA NA intronic Slc47a2 NA NA intronic ENSMUSG00000069855 NA NA 11qB2 NA NA chr11 61126270 GTAxAAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58289 0.58293 0.999931 58 0 0 22.244774 0.384615 0.02 -0.227917 16 10 423 250 60 60 0 0 CC 7.519373 25 0 692 0 KEEP - Slc47a2 YES MNNG_4 chr11 6299574 6299574 C T exonic Zmiz2 synonymous SNV NM_001005867:c.C1212T:p.F404F exonic Zmiz2 synonymous SNV uc007hym.1:c.C1212T:p.F404F exonic ENSMUSG00000041164 synonymous SNV ENSMUST00000109785:c.C1230T:p.F410F 11qA1 NA NA chr11 6299574 CTTxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 145 0 0 92.911891 0.528571 0.02 0.886294 33 37 907 963 60 60 0 0 CC 18.35011 61 0 1737 0 KEEP + Zmiz2 YES MNNG_4 chr11 63885183 63885183 C T exonic Cox10 synonymous SNV NM_178379:c.G333A:p.R111R exonic Cox10 synonymous SNV uc007jko.2:c.G333A:p.R111R exonic ENSMUSG00000042148 synonymous SNV ENSMUST00000049091:c.G333A:p.R111R 11qB3 NA NA chr11 63885183 CTTxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 79 0 0 65.519518 0.625 0.02 -0.350692 15 25 416 651 60 60 0 0 CC 9.925798 33 0 925 0 KEEP - Cox10 YES MNNG_4 chr11 65645154 65645154 C T exonic Dnah9 synonymous SNV NM_001099633:c.G13362A:p.R4454R exonic Dnahc9 synonymous SNV uc007jlg.1:c.G13362A:p.R4454R exonic ENSMUSG00000056752 synonymous SNV ENSMUST00000080665:c.G13362A:p.R4454R 11qB3 NA NA chr11 65645154 TCCxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322764 0.322807 0.999869 47 0 0 17.014838 0.388889 0.02 -0.157829 11 7 303 189 60 60 0 0 CC 6.316614 21 0 585 0 KEEP - Dnah9 YES MNNG_4 chr11 67063920 67063920 C T intronic Myh4 NA NA intronic Myh4 NA NA intronic ENSMUSG00000057003 NA NA 11qB3 NA NA chr11 67063920 CCAxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 95 1 0 46.664018 0.463415 0.02 -0.359466 22 19 597 499 60 60 0 0 CC 12.632869 42 0 1165 0 KEEP + Myh4 YES MNNG_4 chr11 68199098 68199098 C T exonic Ntn1 synonymous SNV NM_008744:c.G525A:p.Q175Q exonic Ntn1 synonymous SNV uc007jnm.1:c.G525A:p.Q175Q exonic ENSMUSG00000020902 synonymous SNV ENSMUST00000021284:c.G525A:p.Q175Q 11qB3 NA NA chr11 68199098 GAAxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 110 0 0 77.809975 0.54386 0.02 1.097623 26 31 714 801 60 60 0 0 CC 14.123764 47 0 1279 0 KEEP - Ntn1 YES MNNG_4 chr11 68305959 68305959 C T exonic Pik3r5 synonymous SNV NM_177320:c.C1101T:p.R367R exonic Pik3r5 synonymous SNV uc007jnp.1:c.C726T:p.R242R exonic ENSMUSG00000020901 synonymous SNV ENSMUST00000021283:c.C1101T:p.R367R 11qB3 NA NA chr11 68305959 CCGxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967424 0.967425 0.999999 104 0 0 76.611645 0.576923 0.02 1.044144 22 30 594 777 60 60 0 0 CC 10.828193 36 0 999 0 KEEP + Pik3r5 YES MNNG_4 chr11 68371176 68371176 C T exonic Mfsd6l synonymous SNV NM_146004:c.C1350T:p.S450S exonic Mfsd6l synonymous SNV uc007jnv.1:c.C1350T:p.S450S exonic ENSMUSG00000048329 synonymous SNV ENSMUST00000053211:c.C1350T:p.S450S 11qB3 NA NA chr11 68371176 GAGxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 127 0 0 94.094603 0.541667 0.02 0.860318 33 39 890 971 60 60 0 0 CC 13.21921 44 0 1209 0 KEEP + Mfsd6l YES MNNG_4 chr11 68917171 68917171 C T exonic Per1 nonsynonymous SNV NM_001159367:c.C1618T:p.P540S exonic Per1 nonsynonymous SNV uc011xwu.1:c.C1558T:p.P520S exonic ENSMUSG00000020893 nonsynonymous SNV ENSMUST00000102605:c.C1558T:p.P520S 11qB3 NA NA chr11 68917171 GGGxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 101 0 0 66.634444 0.55102 0.02 -0.429337 22 27 582 684 60 60 0 0 CC 12.929006 43 0 1176 0 KEEP + Per1 YES MNNG_4 chr11 69039862 69039862 A C intronic Gucy2e NA NA intronic Gucy2e NA NA intronic ENSMUSG00000020890 NA NA 11qB3 NA NA chr11 69039862 CCCxAAC A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 74 0 0 17.250634 0.186047 0.02 -0.376961 35 8 914 224 60 60 0 0 AA 8.722013 29 0 802 0 KEEP - Gucy2e NO MNNG_4 chr11 69291146 69291146 C T splicing Dnah2(NM_001081330:exon33:c.5163+1G>A) NA NA splicing Dnahc2(uc007jqg.1:exon33:c.5163+1G>A) NA NA splicing ENSMUSG00000005237(ENSMUST00000108659:exon33:c.5163+1G>A) NA NA 11qB3 NA NA chr11 69291146 CCAxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 148 0 0 66.817506 0.432836 0.02 0.912669 38 29 1016 729 60 60 0 0 CC 16.841404 56 0 1521 0 KEEP - Dnah2 YES MNNG_4 chr11 69308651 69308651 C T exonic Dnah2 synonymous SNV NM_001081330:c.G3006A:p.E1002E exonic Dnahc2 synonymous SNV uc007jqg.1:c.G3006A:p.E1002E exonic ENSMUSG00000005237 synonymous SNV ENSMUST00000035539:c.G3006A:p.E1002E 11qB3 NA NA chr11 69308651 GATxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818352 0.818465 0.999863 63 0 0 51.291725 0.555556 0.02 -0.315634 16 20 443 525 60 60 0 0 CC 6.016022 20 0 567 0 KEEP - Dnah2 YES MNNG_4 chr11 69549260 69549260 C T exonic Polr2a nonsynonymous SNV NM_009089:c.G4534A:p.A1512T exonic Polr2a nonsynonymous SNV uc007jrj.1:c.G4534A:p.A1512T exonic ENSMUSG00000005198 nonsynonymous SNV ENSMUST00000071213:c.G4534A:p.A1512T 11qB3 NA NA chr11 69549260 CAGxACT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 101 0 0 59.881191 0.555556 0.02 -0.394426 20 25 541 614 60 60 0 0 CC 12.930629 43 0 1180 0 KEEP - Polr2a YES MNNG_4 chr11 69555241 69555241 C T exonic Polr2a nonsynonymous SNV NM_009089:c.G2932A:p.V978I exonic Polr2a nonsynonymous SNV uc007jrj.1:c.G2932A:p.V978I exonic ENSMUSG00000005198 nonsynonymous SNV ENSMUST00000058470:c.G2932A:p.V978I 11qB3 NA NA chr11 69555241 GGAxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 155 0 0 118.269076 0.533333 0.02 0.684754 42 48 1114 1224 60 60 0 0 CC 16.528613 55 0 1474 0 KEEP - Polr2a YES MNNG_4 chr11 69589504 69589504 C T exonic Zbtb4 synonymous SNV NM_029348:c.C132T:p.H44H exonic Zbtb4 synonymous SNV uc007jro.1:c.C132T:p.H44H exonic ENSMUSG00000018750 synonymous SNV ENSMUST00000108638:c.C132T:p.H44H 11qB3 NA NA chr11 69589504 TCAxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 120 1 0 96.608138 0.627119 0.02 0.982777 22 37 589 959 60 60 0 0 CC 13.8363 46 0 1282 0 KEEP + Zbtb4 YES MNNG_4 chr11 69724798 69724798 C T exonic Neurl4 nonsynonymous SNV NM_001013414:c.C4034T:p.S1345F exonic Neurl4 nonsynonymous SNV uc011xxf.1:c.C3968T:p.S1323F exonic ENSMUSG00000047284 nonsynonymous SNV ENSMUST00000108617:c.C3968T:p.S1323F 11qB3 NA NA chr11 69724798 GCTxCCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 182 3 0 127.130824 0.549451 0.02 0.790777 41 50 1127 1305 60 60 0 0 CC 20.565968 69 0 1856 0 KEEP + Neurl4 YES MNNG_4 chr11 69802208 69802208 C T exonic Ctdnep1 nonsynonymous SNV NM_026017:c.C454T:p.L152F exonic Ctdnep1 nonsynonymous SNV uc007jtf.1:c.C454T:p.L152F exonic ENSMUSG00000018559 nonsynonymous SNV ENSMUST00000018703:c.C454T:p.L152F 11qB3 NA NA chr11 69802208 ATTxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 42 0 0 23.961702 0.4 0.02 -0.219202 15 10 414 265 60 60 0 0 CC 5.114292 17 0 491 0 KEEP + Ctdnep1 YES MNNG_4 chr11 69828098 69828098 C T intronic Acadvl NA NA intronic Acadvl NA NA intronic ENSMUSG00000018574 NA NA 11qB3 NA NA chr11 69828098 TGCxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 132 1 0 68.878968 0.41791 0.02 1.009901 39 28 1058 753 60 60 0 0 CC 17.738386 59 0 1625 0 KEEP - Acadvl YES MNNG_4 chr11 70223450 70223450 C T exonic Pelp1 nonsynonymous SNV NM_029231:c.G65A:p.G22E exonic Pelp1 nonsynonymous SNV uc007jup.2:c.G65A:p.G22E exonic ENSMUSG00000018921 nonsynonymous SNV ENSMUST00000019065:c.G65A:p.G22E 11qB3 NA NA chr11 70223450 CCCxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162444 0.162467 0.99986 39 0 0 11.644635 0.416667 0.02 -0.113956 7 5 186 128 60 60 0 0 CC 5.713449 19 0 521 0 KEEP - Pelp1 YES MNNG_4 chr11 70354793 70354793 C T intronic Pld2 NA NA intronic Pld2 NA NA intronic ENSMUSG00000020828 NA NA 11qB3 NA NA chr11 70354793 TATxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 205 0 0 107.107955 0.5 0.02 0.834583 43 43 1180 1125 60 60 0 0 CC 31.578909 105 0 2945 0 KEEP + Pld2 YES MNNG_4 chr11 70355490 70355490 C T intronic Pld2 NA NA intronic Pld2 NA NA intronic ENSMUSG00000020828 NA NA 11qB3 NA NA chr11 70355490 TTCxGTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 139 1 0 81.636703 0.471429 0.02 0.984521 37 33 861 869 60 60 0 0 CC 16.8215 56 0 1392 0 KEEP + Pld2 YES MNNG_4 chr11 70426385 70426385 C T intronic Mink1 NA NA intronic Mink1 NA NA ncRNA_intronic ENSMUSG00000086976 NA NA 11qB3 NA NA chr11 70426385 CCAxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 99 0 0 46.513597 0.425532 0.02 -0.412033 27 20 726 509 60 60 0 0 CC 12.932185 43 0 1172 0 KEEP + Mink1 YES MNNG_4 chr11 70429408 70429408 C T UTR5 4930544D05Rik NA NA UTR5 4930544D05Rik NA NA ncRNA_exonic ENSMUSG00000087279 NA NA 11qB3 NA NA chr11 70429408 GTCxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 87 0 0 37.582477 0.428571 0.02 -0.315409 20 15 532 408 60 60 0 0 CC 10.828281 36 0 1005 0 KEEP + 4930544D05Rik YES MNNG_4 chr11 70459019 70459019 C T intronic Slc25a11 NA NA intronic Slc25a11 NA NA intronic ENSMUSG00000014606 NA NA 11qB3 NA NA chr11 70459019 CAAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 124 0 0 64.438647 0.538462 0.02 0.940133 24 28 645 668 60 60 0 0 CC 13.526927 45 0 1204 0 KEEP - Slc25a11 YES MNNG_4 chr11 70472674 70472674 C G intronic Eno3 NA NA intronic Eno3 NA NA intronic ENSMUSG00000060600 NA NA 11qB3 NA NA chr11 70472674 TGGxTGT C G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 158 2 0 53.76994 0.415094 0.02 1.221733 31 22 863 589 60 60 0 0 CC 23.734751 79 0 2185 0 KEEP + Eno3 NO MNNG_4 chr11 70781420 70781420 C T exonic Nup88 nonsynonymous SNV NM_001083331:c.G403A:p.A135T exonic Nup88 nonsynonymous SNV uc007jww.1:c.G403A:p.A135T exonic ENSMUSG00000040667 nonsynonymous SNV ENSMUST00000035283:c.G403A:p.A135T 11qB4 NA NA chr11 70781420 ATGxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 138 0 0 57.99488 0.421053 0.02 1.000225 33 24 914 634 60 60 0 0 CC 19.851924 66 0 1842 0 KEEP - Nup88 YES MNNG_4 chr11 70955879 70955879 C T UTR5 Nlrp1a NA NA UTR5 Nlrp1a NA NA UTR5 ENSMUSG00000069830 NA NA 11qB4 NA NA chr11 70955879 GAGxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 90 0 0 63.433327 0.581395 0.02 -0.376623 18 25 480 642 60 60 0 0 CC 10.823539 36 0 984 0 KEEP - Nlrp1a YES MNNG_4 chr11 72714154 72714154 C T exonic Zzef1 nonsynonymous SNV NM_001045536:c.C6494T:p.A2165V exonic Zzef1 nonsynonymous SNV uc007jzl.2:c.C6494T:p.A2165V exonic ENSMUSG00000055670 nonsynonymous SNV ENSMUST00000069395:c.C6494T:p.A2165V 11qB4 NA NA chr11 72714154 GGGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 244 23 0 86.624272 0.322581 0.02 1.799347 84 40 2250 1014 60 60 0 0 CC 27.314161 91 0 2457 0 KEEP + Zzef1 YES MNNG_4 chr11 72822009 72822009 C T exonic P2rx1 nonsynonymous SNV NM_008771:c.C326T:p.T109I exonic P2rx1 nonsynonymous SNV uc007jzq.2:c.C326T:p.T109I exonic ENSMUSG00000020787 nonsynonymous SNV ENSMUST00000021141:c.C326T:p.T109I 11qB4 NA NA chr11 72822009 TGAxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 200 5 0 99.377831 0.482353 0.02 0.754818 44 41 1197 1054 60 60 0 0 CC 23.999422 80 0 2185 0 KEEP + P2rx1 YES MNNG_4 chr11 72951084 72951084 C T exonic Gsg2 nonsynonymous SNV NM_010353:c.G680A:p.G227E exonic Gsg2 nonsynonymous SNV uc007jzz.2:c.G680A:p.G227E exonic ENSMUSG00000050107 nonsynonymous SNV ENSMUST00000052140:c.G680A:p.G227E 11qB4 NA NA chr11 72951084 GTCxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 610 0 0 237.224337 0.450237 0.02 4.530744 116 95 3182 2550 60 60 0 0 CC 92.91217 309 0 8550 0 KEEP - Gsg2 YES MNNG_4 chr11 72959118 72959118 C T exonic Itgae synonymous SNV NM_008399:c.C3379T:p.L1127L exonic Itgae synonymous SNV uc007jzy.2:c.C3379T:p.L1127L exonic ENSMUSG00000005947 synonymous SNV ENSMUST00000006101:c.C3379T:p.L1127L 11qB4 NA NA chr11 72959118 CTCxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 196 0 0 100.60588 0.45977 0.02 0.932386 47 40 1305 1076 60 60 0 0 CC 24.064462 80 0 2278 0 KEEP + Itgae YES MNNG_4 chr11 73188402 73188402 C T exonic Olfr376 synonymous SNV NM_146922:c.C150T:p.I50I exonic Olfr376 synonymous SNV uc011xyu.1:c.C150T:p.I50I exonic ENSMUSG00000063881 synonymous SNV ENSMUST00000127789:c.C150T:p.I50I 11qB4 NA NA chr11 73188402 CATxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 435 1 0 210.269341 0.570423 0.02 1.940924 61 81 1696 2138 60 60 0 0 CC 67.638104 225 0 6372 0 KEEP + Olfr376 YES MNNG_4 chr11 73188647 73188647 C T exonic Olfr376 nonsynonymous SNV NM_146922:c.C395T:p.P132L exonic Olfr376 nonsynonymous SNV uc011xyu.1:c.C395T:p.P132L exonic ENSMUSG00000063881 nonsynonymous SNV ENSMUST00000127789:c.C395T:p.P132L 11qB4 NA NA chr11 73188647 TCCxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 321 1 0 114.248291 0.390244 0.02 2.107716 75 48 2050 1271 60 60 0 0 CC 48.109165 160 0 4430 0 KEEP + Olfr376 YES MNNG_4 chr11 73416652 73416652 C T exonic Olfr384 nonsynonymous SNV NM_207224:c.C569T:p.S190F exonic Olfr384 nonsynonymous SNV uc007kay.1:c.C569T:p.S190F exonic ENSMUSG00000060335 nonsynonymous SNV ENSMUST00000072993:c.C569T:p.S190F 11qB4 NA NA chr11 73416652 GCTxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 231 1 0 110.845875 0.473118 0.02 0.862352 49 44 1339 1178 60 60 0 0 CC 33.683945 112 0 3203 0 KEEP + Olfr384 YES MNNG_4 chr11 74020344 74020344 C T exonic Olfr43 nonsynonymous SNV NM_146711:c.G373A:p.A125T exonic Olfr43 nonsynonymous SNV uc007kbp.2:c.G373A:p.A125T exonic ENSMUSG00000070377 nonsynonymous SNV ENSMUST00000078936:c.G373A:p.A125T 11qB5 "Score=0.982883;Name=No.13010,chr11:74008947" NA chr11 74020344 TAGxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 150 0 0 73.578394 0.383721 0.02 0.747266 53 33 1427 827 60 60 0 0 CC 16.843321 56 0 1554 0 KEEP - Olfr43 YES MNNG_4 chr11 74102539 74102539 C T exonic Olfr59 synonymous SNV NM_011002:c.C390T:p.L130L exonic Olfr59 synonymous SNV uc007kbr.2:c.C390T:p.L130L exonic ENSMUSG00000070374 synonymous SNV ENSMUST00000119717:c.C390T:p.L130L 11qB5 "Score=0.902214;Name=No.13015,chr11:74111668" NA chr11 74102539 TCTxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 271 4 0 155.910404 0.459854 0.02 1.887941 74 63 2016 1669 60 60 0 0 CC 33.992413 113 0 3214 0 KEEP + Olfr59 YES MNNG_4 chr11 74473312 74473312 C T exonic Cluh synonymous SNV NM_001081158:c.C861T:p.V287V exonic 1300001I01Rik synonymous SNV uc007kca.1:c.C861T:p.V287V exonic ENSMUSG00000020741 synonymous SNV ENSMUST00000092915:c.C861T:p.V287V 11qB5 NA NA chr11 74473312 AGTxAGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 210 0 0 89.585615 0.419355 0.02 0.685167 54 39 1505 985 60 60 0 0 CC 26.773859 89 0 2554 0 KEEP + Cluh YES MNNG_4 chr11 74480656 74480656 C T exonic Cluh nonsynonymous SNV NM_001081158:c.C3370T:p.L1124F exonic 1300001I01Rik nonsynonymous SNV uc007kcc.1:c.C208T:p.L70F exonic ENSMUSG00000020741 nonsynonymous SNV ENSMUST00000117818:c.C3217T:p.L1073F 11qB5 NA NA chr11 74480656 AGCxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 176 2 0 107.706172 0.511905 0.02 0.958869 41 43 1138 1125 60 60 0 0 CC 21.646095 72 0 2024 0 KEEP + Cluh YES MNNG_4 chr11 75126778 75126778 C T intronic Rpa1 NA NA intronic Rpa1 NA NA intronic ENSMUSG00000000751 NA NA 11qB5 NA NA chr11 75126778 CAGxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 87 0 0 40.656304 0.447368 0.02 -0.333167 21 17 580 439 60 60 0 0 CC 12.333097 41 0 1159 0 KEEP - Rpa1 YES MNNG_4 chr11 75203756 75203756 C T exonic Smyd4 synonymous SNV NM_001102611:c.C552T:p.Y184Y exonic Smyd4 synonymous SNV uc007kdn.1:c.C153T:p.Y51Y exonic ENSMUSG00000018809 synonymous SNV ENSMUST00000044530:c.C552T:p.Y184Y 11qB5 NA NA chr11 75203756 TTAxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 141 0 0 41.672653 0.306452 0.02 1.045002 43 19 1166 492 60 60 0 0 CC 18.045662 60 0 1649 0 KEEP + Smyd4 YES MNNG_4 chr11 75257739 75257739 C T intronic Wdr81 NA NA intronic Wdr81 NA NA intronic ENSMUSG00000045374 NA NA 11qB5 NA NA chr11 75257739 GGAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 196 0 0 93.793078 0.506494 0.02 0.922516 38 39 1017 984 60 60 0 0 CC 26.457808 88 0 2379 0 KEEP - Wdr81 YES MNNG_4 chr11 75325257 75325257 C T intronic Rilp NA NA intronic Rilp NA NA intronic ENSMUSG00000038195 NA NA 11qB5 NA NA chr11 75325257 CCAxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 91 0 0 28.179316 0.317073 0.02 -0.35945 28 13 758 331 60 60 0 0 CC 11.730754 39 0 1092 0 KEEP + Rilp YES MNNG_4 chr11 75381823 75381823 C T intronic Slc43a2 NA NA ncRNA_intronic slc43a2 NA NA intronic ENSMUSG00000038178 NA NA 11qB5 NA NA chr11 75381823 ACCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 74 0 0 24.789982 0.416667 0.02 -0.21044 14 10 384 271 60 60 0 0 CC 11.4293 38 0 1049 0 KEEP + Slc43a2 YES MNNG_4 chr11 77312436 77312436 C T intronic Git1 NA NA intronic Git1 NA NA intronic ENSMUSG00000011877 NA NA 11qB5 NA NA chr11 77312436 GGCxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.384582 0.387407 0.992708 29 0 0 22.514514 0.45 0.02 -0.175364 11 9 302 242 60 60 0 0 CC 3.007015 10 0 272 0 KEEP + Git1 YES MNNG_4 chr11 77532872 77532872 C T intronic Cryba1 NA NA intronic Cryba1 NA NA intronic "ENSMUSG00000000724,ENSMUSG00000037857" NA NA 11qB5 NA NA chr11 77532872 CATxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582854 0.58293 0.999869 52 0 0 26.752472 0.423077 0.02 -0.227978 15 11 419 292 60 60 0 0 CC 6.316984 21 0 596 0 KEEP - Cryba1 YES MNNG_4 chr11 77836507 77836507 C T intronic Phf12 NA NA intronic Phf12 NA NA intronic ENSMUSG00000037791 NA NA 11qB5 NA NA chr11 77836507 CTCxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.421102 0.423478 0.994391 40 0 0 42.593257 0.714286 0.02 -0.184138 6 15 167 409 60 60 0 0 CC 3.910272 13 0 362 0 KEEP + Phf12 YES MNNG_4 chr11 78080139 78080139 C T exonic 2610507B11Rik synonymous SNV NM_001002004:c.C933T:p.H311H exonic 2610507B11Rik synonymous SNV uc007kir.2:c.C933T:p.H311H exonic ENSMUSG00000010277 synonymous SNV ENSMUST00000010421:c.C933T:p.H311H 11qB5 NA NA chr11 78080139 CCAxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 147 1 0 94.176918 0.520548 0.02 0.85154 35 38 916 980 60 60 0 0 CC 19.486097 65 0 1753 0 KEEP + 2610507B11Rik YES MNNG_4 chr11 78323850 78323850 C T exonic Tmem199 synonymous SNV NM_199199:c.G285A:p.R95R exonic Tmem199 synonymous SNV uc007kjn.1:c.G285A:p.R95R exonic ENSMUSG00000051232 synonymous SNV ENSMUST00000052566:c.G285A:p.R95R 11qB5 NA NA chr11 78323850 TACxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 122 0 0 65.030423 0.52 0.02 -0.438078 24 26 658 677 60 60 0 0 CC 15.340133 51 0 1424 0 KEEP - Tmem199 YES MNNG_4 chr11 78873292 78873292 C T intronic Ksr1 NA NA UTR5 Ksr1 NA NA UTR5 ENSMUSG00000018334 NA NA 11qB5 NA NA chr11 78873292 GCCxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 120 0 0 108.51053 0.634921 0.02 1.04497 23 40 629 1074 60 60 0 0 CC 11.732279 39 0 1117 0 KEEP - Ksr1 YES MNNG_4 chr11 80293051 80293051 C T UTR3 Cdk5r1 NA NA UTR3 Cdk5r1 NA NA UTR3 ENSMUSG00000048895 NA NA 11qB5 NA NA chr11 80293051 CGCxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552812 0.552887 0.999863 49 0 0 32.678721 0.52 0.02 -0.219188 12 13 332 340 60 60 0 0 CC 6.016035 20 0 562 0 KEEP + Cdk5r1 YES MNNG_4 chr11 80681094 80681094 C T intronic Spaca3 NA NA intronic Spaca3 NA NA intronic ENSMUSG00000053184 NA NA 11qB5 NA NA chr11 80681094 CACxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.796519 0.800245 0.995343 52 0 0 46.953506 0.514286 0.02 -0.306876 17 18 459 489 60 60 0 0 CC 4.208242 14 0 377 0 KEEP + Spaca3 YES MNNG_4 chr11 81386445 81386445 C T exonic 1700071K01Rik synonymous SNV NM_001033765:c.G531A:p.K177K exonic 1700071K01Rik synonymous SNV uc007kmn.1:c.G531A:p.K177K ncRNA_exonic ENSMUSG00000080980 NA NA 11qB5 NA NA chr11 81386445 CTCxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 133 0 0 81.779881 0.574074 0.02 1.204416 23 31 631 830 60 60 0 0 CC 17.147433 57 0 1636 0 KEEP - 1700071K01Rik YES MNNG_4 chr11 82202554 82202554 C T exonic Tmem132e synonymous SNV NM_023438:c.C6T:p.A2A exonic Tmem132e synonymous SNV uc007kmv.1:c.C6T:p.A2A exonic ENSMUSG00000020701 synonymous SNV ENSMUST00000054245:c.C6T:p.A2A 11qC NA NA chr11 82202554 GGCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 106 2 0 47.623196 0.487179 0.02 -0.350695 20 19 548 503 60 60 0 0 CC 14.118753 47 0 1267 0 KEEP + Tmem132e YES MNNG_4 chr11 82248632 82248632 C T exonic Tmem132e nonsynonymous SNV NM_023438:c.C679T:p.P227S exonic Tmem132e nonsynonymous SNV uc011yaw.1:c.C67T:p.P23S exonic ENSMUSG00000020701 nonsynonymous SNV ENSMUST00000054245:c.C955T:p.P319S 11qC NA NA chr11 82248632 GCAxCTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 104 0 0 41.493863 0.375 0.02 -0.420815 30 18 802 467 60 60 0 0 CC 12.931152 43 0 1190 0 KEEP + Tmem132e YES MNNG_4 chr11 83257712 83257712 C T splicing "Mmp28(NM_172797:exon7:c.1000+1G>A,NM_080453:exon7:c.1000+1G>A)" NA NA splicing "Mmp28(uc007kpa.1:exon7:c.1000+1G>A,uc007kpb.1:exon7:c.1000+1G>A,uc007kpc.1:exon7:c.1000+1G>A,uc007kpd.1:exon7:c.1000+1G>A)" NA NA splicing "ENSMUSG00000020682(ENSMUST00000103209:exon7:c.1000+1G>A,ENSMUST00000108137:exon7:c.1000+1G>A,ENSMUST00000021020:exon7:c.1000+1G>A,ENSMUST00000119346:exon7:c.1000+1G>A)" NA NA 11qC NA NA chr11 83257712 TTAxCTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 189 1 0 123.619262 0.615385 0.02 0.913819 30 48 790 1233 60 60 0 0 CC 24.927033 83 0 2249 0 KEEP - Mmp28 YES MNNG_4 chr11 83402352 83402352 C T exonic Ccl6 nonsynonymous SNV NM_009139:c.G326A:p.R109K exonic Ccl6 nonsynonymous SNV uc007kpm.1:c.G326A:p.R109K exonic ENSMUSG00000018927 nonsynonymous SNV ENSMUST00000019071:c.G326A:p.R109K 11qC NA NA chr11 83402352 GATxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 0 0 132.038962 0.425197 0.02 1.983796 73 54 2027 1439 60 60 0 0 CC 35.481823 118 0 3329 0 KEEP - Ccl6 YES MNNG_4 chr11 83436416 83436416 C T ncRNA_exonic E230016K23Rik NA NA ncRNA_exonic E230016K23Rik NA NA ncRNA_exonic ENSMUSG00000051832 NA NA 11qC NA NA chr11 83436416 TTGxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999997 83 0 0 52.466562 0.5 0.02 -0.368243 21 21 581 551 60 60 0 0 CC 9.624847 32 0 885 0 KEEP + E230016K23Rik YES MNNG_4 chr11 84713846 84713846 C T intronic Myo19 NA NA intronic Myo19 NA NA intronic ENSMUSG00000020527 NA NA 11qC NA NA chr11 84713846 CATxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739203 0.739671 0.999366 53 0 0 50.168741 0.59375 0.02 -0.280572 13 19 358 505 60 60 0 0 CC 5.10795 17 0 465 0 KEEP + Myo19 YES MNNG_4 chr11 84991896 84991896 C T exonic 1700125H20Rik synonymous SNV NM_028589:c.C567T:p.A189A exonic 1700125H20Rik synonymous SNV uc011ybo.1:c.C237T:p.A79A exonic ENSMUSG00000018479 synonymous SNV ENSMUST00000100681:c.C237T:p.A79A 11qC NA NA chr11 84991896 AGCxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 115 1 0 82.32157 0.471429 0.02 0.983841 37 33 1003 876 60 60 0 0 CC 12.934663 43 0 1212 0 KEEP + 1700125H20Rik YES MNNG_4 chr11 86028741 86028741 C T exonic Ints2 nonsynonymous SNV NM_027421:c.G3049A:p.E1017K exonic Ints2 nonsynonymous SNV uc007ksi.1:c.G3049A:p.E1017K exonic ENSMUSG00000018068 nonsynonymous SNV ENSMUST00000108039:c.G3049A:p.E1017K 11qC NA NA chr11 86028741 GTTxACA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 98 0 0 48.083811 0.575758 0.02 -0.289317 14 19 391 488 60 60 0 0 CC 15.343022 51 0 1477 0 KEEP - Ints2 YES MNNG_4 chr11 86611207 86611207 C T exonic Dhx40 synonymous SNV NM_026191:c.G891A:p.E297E exonic Dhx40 synonymous SNV uc007ktc.1:c.G891A:p.E297E exonic ENSMUSG00000018425 synonymous SNV ENSMUST00000018569:c.G891A:p.E297E 11qC NA NA chr11 86611207 AGAxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 123 0 0 70.352735 0.658537 0.02 -0.367919 14 27 359 689 60 70 0 0 CC 17.143321 57 0 1578 0 KEEP - Dhx40 YES MNNG_4 chr11 87381262 87381262 C T intergenic "Tex14(dist=11937),Sept4(dist=10629)" NA NA intergenic "Tex14(dist=11937),Sept4(dist=10662)" NA NA exonic ENSMUSG00000090107 nonsynonymous SNV ENSMUST00000060360:c.C959T:p.S320F 11qC NA NA chr11 87381262 TATxCGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 268 0 0 157.549591 0.554545 0.02 2.221526 49 61 1336 1613 60 60 0 0 CC 40.001379 133 0 3736 0 KEEP NA Tex14 YES MNNG_4 chr11 88802657 88802657 C T exonic Scpep1 nonsynonymous SNV NM_029023:c.G560A:p.G187E exonic Scpep1 nonsynonymous SNV uc011yci.1:c.G404A:p.G135E exonic ENSMUSG00000000278 nonsynonymous SNV ENSMUST00000100630:c.G404A:p.G135E 11qC NA NA chr11 88802657 GTCxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 30 0 0 18.440718 0.538462 0.02 -0.11399 6 7 166 190 60 60 0 0 CC 3.910326 13 0 364 0 KEEP - Scpep1 YES MNNG_4 chr11 90138057 90138057 C T exonic Mmd synonymous SNV NM_026178:c.C597T:p.G199G exonic Mmd synonymous SNV uc007kwp.1:c.C597T:p.G199G exonic ENSMUSG00000003948 synonymous SNV ENSMUST00000004050:c.C597T:p.G199G 11qC NA NA chr11 90138057 TGGxATC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 97 0 0 32.249059 0.4375 0.02 -0.280516 18 14 495 351 60 60 0 0 CC 16.84596 56 0 1598 0 KEEP + Mmd YES MNNG_4 chr11 9299205 9299205 C T exonic Abca13 nonsynonymous SNV NM_178259:c.C10775T:p.T3592I exonic Abca13 nonsynonymous SNV uc007iaa.1:c.C10775T:p.T3592I exonic ENSMUSG00000004668 nonsynonymous SNV ENSMUST00000042740:c.C10775T:p.T3592I 11qA1 NA NA chr11 9299205 CCAxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888874 0.888875 0.999999 92 0 0 58.15073 0.560976 0.02 -0.359447 18 23 492 594 60 60 0 0 CC 10.527449 35 0 979 0 KEEP + Abca13 YES MNNG_4 chr11 94235238 94235238 C T exonic Abcc3 synonymous SNV NM_029600:c.G597A:p.P199P exonic Abcc3 synonymous SNV uc007kym.1:c.G597A:p.P199P exonic ENSMUSG00000020865 synonymous SNV ENSMUST00000021231:c.G597A:p.P199P 11qD NA NA chr11 94235238 CTCxGGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 72 0 0 35.75614 0.482759 0.02 -0.254214 15 14 385 378 60 60 0 0 CC 9.917248 33 0 840 0 KEEP - Abcc3 YES MNNG_4 chr11 94353286 94353286 C T exonic Epn3 nonsynonymous SNV NM_027984:c.G1285A:p.E429K exonic Epn3 nonsynonymous SNV uc007kyv.2:c.G1204A:p.E402K exonic ENSMUSG00000010080 nonsynonymous SNV ENSMUST00000165069:c.G1204A:p.E402K 11qD NA NA chr11 94353286 GTTxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999218 0.999218 1 178 0 0 70.522696 0.375 0.02 0.895901 50 30 1386 792 60 60 0 0 CC 24.354606 81 0 2299 0 KEEP - Epn3 YES MNNG_4 chr11 94512173 94512173 C T exonic Eme1 nonsynonymous SNV NM_177752:c.G136A:p.V46I exonic Eme1 nonsynonymous SNV uc007kzf.1:c.G136A:p.V46I exonic ENSMUSG00000039055 nonsynonymous SNV ENSMUST00000039949:c.G136A:p.V46I 11qD NA NA chr11 94512173 CAAxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981954 0.981955 0.999998 95 0 0 58.09757 0.446429 0.02 1.097676 31 25 832 629 60 60 0 0 CC 10.225866 34 0 934 0 KEEP - Eme1 YES MNNG_4 chr11 94806712 94806712 C T exonic Col1a1 nonsynonymous SNV NM_007742:c.C1981T:p.P661S exonic Col1a1 nonsynonymous SNV uc007kzn.1:c.C1981T:p.P661S exonic ENSMUSG00000001506 nonsynonymous SNV ENSMUST00000001547:c.C1981T:p.P661S 11qD NA NA chr11 94806712 GGAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 377 4 0 214.07729 0.524096 0.02 3.044826 79 87 2101 2225 60 60 0 0 CC 47.725493 159 0 4309 0 KEEP + Col1a1 YES MNNG_4 chr11 94808552 94808552 C T intronic Col1a1 NA NA intronic Col1a1 NA NA intronic ENSMUSG00000001506 NA NA 11qD NA NA chr11 94808552 TAGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 203 0 0 146.937212 0.521739 0.02 1.992165 55 60 1484 1529 60 60 0 0 CC 23.429116 78 0 2081 0 KEEP + Col1a1 YES MNNG_4 chr11 94812498 94812498 C T exonic Col1a1 synonymous SNV NM_007742:c.C4056T:p.S1352S exonic Col1a1 synonymous SNV uc007kzn.1:c.C4056T:p.S1352S exonic ENSMUSG00000001506 synonymous SNV ENSMUST00000107754:c.C3375T:p.S1125S 11qD NA NA chr11 94812498 CTCxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 316 0 0 185.902857 0.5 0.02 3.442854 73 73 1967 1950 60 60 0 0 CC 39.076483 130 0 3592 0 KEEP + Col1a1 YES MNNG_4 chr11 94861495 94861495 C T intronic Ppp1r9b NA NA intronic Ppp1r9b NA NA intronic ENSMUSG00000038976 NA NA 11qD NA NA chr11 94861495 GACxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 394 7 0 141.158411 0.390728 0.02 3.468143 92 59 2518 1569 60 60 0 0 CC 55.043495 183 0 5093 0 KEEP + Ppp1r9b YES MNNG_4 chr11 94920996 94920996 C T exonic Itga3 nonsynonymous SNV NM_013565:c.G1259A:p.G420E exonic Itga3 nonsynonymous SNV uc007kzv.1:c.G1166A:p.G389E exonic ENSMUSG00000001507 nonsynonymous SNV ENSMUST00000107739:c.G1166A:p.G389E 11qD NA NA chr11 94920996 TCTxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 118 0 0 50.841422 0.42 0.02 1.150197 29 21 793 556 60 60 0 0 CC 16.24386 54 0 1535 0 KEEP - Itga3 YES MNNG_4 chr11 95155876 95155876 C T splicing "Kat7(NM_177619:exon5:c.486+1G>A,NM_001195003:exon6:c.663+1G>A,NM_001195004:exon6:c.663+1G>A)" NA NA splicing "Myst2(uc007lae.2:exon6:c.663+1G>A,uc007laf.2:exon6:c.663+1G>A,uc007lad.2:exon5:c.486+1G>A)" NA NA splicing "ENSMUSG00000038909(ENSMUST00000107733:exon6:c.663+1G>A,ENSMUST00000107734:exon6:c.663+1G>A,ENSMUST00000103159:exon5:c.486+1G>A,ENSMUST00000072621:exon6:c.669+1G>A,ENSMUST00000092766:exon6:c.669+1G>A)" NA NA 11qD NA NA chr11 95155876 TTAxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 140 0 0 48.802213 0.487805 0.02 -0.359317 21 20 547 516 60 60 0 0 CC 23.113385 77 0 2098 0 KEEP - Kat7 YES MNNG_4 chr11 95694522 95694522 C T splicing "Abi3(NM_025659:exon8:c.940+1G>A,NM_001163464:exon8:c.781+1G>A)" NA NA splicing "Abi3(uc007lat.2:exon8:c.940+1G>A,uc011ydb.1:exon8:c.781+1G>A)" NA NA splicing "ENSMUSG00000018381(ENSMUST00000018525:exon9:c.938+1G>A,ENSMUST00000059026:exon8:c.940+1G>A,ENSMUST00000137645:exon6:c.579+1G>A)" NA NA 11qD NA NA chr11 95694522 GTAxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 90 1 0 43.37594 0.452381 0.02 -0.367941 23 19 615 469 60 60 0 0 CC 10.519526 35 0 947 0 KEEP - Abi3 YES MNNG_4 chr11 96207314 96207314 C T exonic Hoxb3 synonymous SNV NM_010458:c.C903T:p.H301H exonic Hoxb3 synonymous SNV uc007lbx.1:c.C903T:p.H301H exonic ENSMUSG00000048763 synonymous SNV ENSMUST00000055334:c.C903T:p.H301H 11qD NA NA chr11 96207314 CCAxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.865745 0.865745 1 111 0 0 39.902899 0.435897 0.02 -0.3419 22 17 594 434 60 60 0 0 CC 16.542313 55 0 1517 0 KEEP + Hoxb3 YES MNNG_4 chr11 97025227 97025227 C T splicing Kpnb1(NM_008379:exon21:c.2468+1G>A) NA NA splicing "Kpnb1(uc007ldu.1:exon21:c.2468+1G>A,uc011yds.1:exon21:c.1412+1G>A)" NA NA splicing ENSMUSG00000001440(ENSMUST00000001479:exon21:c.2468+1G>A) NA NA 11qD NA NA chr11 97025227 TTAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 121 2 0 48.476217 0.446809 0.02 -0.411993 26 21 688 525 60 60 0 0 CC 17.743711 59 0 1601 0 KEEP - Kpnb1 YES MNNG_4 chr11 97250526 97250526 C T exonic Socs7 synonymous SNV NM_138657:c.C1584T:p.V528V exonic Socs7 synonymous SNV uc007lea.1:c.C1584T:p.V528V exonic ENSMUSG00000038485 synonymous SNV ENSMUST00000045540:c.C1584T:p.V528V 11qD NA NA chr11 97250526 TGTxCGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 104 0 0 81.308133 0.571429 0.02 1.106702 24 32 659 827 60 60 0 0 CC 11.130272 37 0 1050 0 KEEP + Socs7 YES MNNG_4 chr11 97619072 97619072 C T exonic Cwc25 synonymous SNV NM_026186:c.G243A:p.V81V exonic Cwc25 synonymous SNV uc007ler.2:c.G243A:p.V81V exonic ENSMUSG00000018541 synonymous SNV ENSMUST00000018685:c.G243A:p.V81V 11qD NA NA chr11 97619072 GTTxACC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 72 0 0 43.746743 0.514286 0.02 -0.306838 17 18 470 457 60 60 0 0 CC 8.12103 27 0 764 0 KEEP - Cwc25 YES MNNG_4 chr11 98189144 98189144 G A exonic Neurod2 synonymous SNV NM_010895:c.C507T:p.N169N exonic Neurod2 synonymous SNV uc009vai.1:c.C507T:p.N169N exonic ENSMUSG00000038255 synonymous SNV ENSMUST00000041685:c.C507T:p.N169N 11qD NA NA chr11 98189144 GTAxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 221 2 0 109.697223 0.455446 0.02 2.505035 55 46 1476 1180 60 60 0 0 GG 28.573166 95 0 2637 0 KEEP - Neurod2 YES MNNG_4 chr11 98239685 98239685 G A exonic Stard3 nonsynonymous SNV NM_021547:c.G898A:p.E300K exonic Stard3 nonsynonymous SNV uc007lgc.1:c.G898A:p.E300K exonic ENSMUSG00000018167 nonsynonymous SNV ENSMUST00000018311:c.G898A:p.E300K 11qD NA NA chr11 98239685 CAGxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 169 0 0 61.948471 0.376812 0.02 0.99233 43 26 1193 694 60 60 0 0 GG 22.862161 76 0 2163 0 KEEP + Stard3 YES MNNG_4 chr11 98314784 98314784 G A intronic Grb7 NA NA intronic Grb7 NA NA intronic ENSMUSG00000019312 NA NA 11qD NA NA chr11 98314784 TAGxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 101 2 0 21.562834 0.238095 0.02 -0.376919 32 10 878 268 60 60 0 0 GG 12.332756 41 0 1151 0 KEEP + Grb7 YES MNNG_4 chr11 99179383 99179383 G A exonic Krt25 nonsynonymous SNV NM_133730:c.C934T:p.L312F exonic Krt25 nonsynonymous SNV uc007lin.1:c.C934T:p.L312F exonic ENSMUSG00000035831 nonsynonymous SNV ENSMUST00000038004:c.C934T:p.L312F 11qD NA NA chr11 99179383 GGAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739604 0.739671 0.999909 65 0 0 23.206125 0.322581 0.02 -0.28056 21 10 574 269 60 60 0 0 GG 7.218664 24 0 679 0 KEEP - Krt25 YES MNNG_4 chr11 99234193 99234193 C T exonic Krt28 synonymous SNV NM_027574:c.G564A:p.E188E exonic Krt28 synonymous SNV uc007liq.2:c.G564A:p.E188E exonic ENSMUSG00000055937 synonymous SNV ENSMUST00000006963:c.G564A:p.E188E 11qD NA NA chr11 99234193 TGCxTCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 111 0 0 53.372275 0.512195 0.02 -0.359456 20 21 546 557 60 60 0 0 CC 18.345368 61 0 1694 0 KEEP - Krt28 YES MNNG_4 chr11 99699109 99699109 C A exonic 2300003K06Rik nonsynonymous SNV NM_001195383:c.G221T:p.C74F exonic 2300003K06Rik nonsynonymous SNV uc011yet.1:c.G221T:p.C74F exonic ENSMUSG00000078257 nonsynonymous SNV ENSMUST00000105054:c.G221T:p.C74F 11qD NA NA chr11 99699109 CAAxAGC C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 129 0 0 9.093281 0.138889 0.02 -0.315617 31 5 826 130 60 60 0 0 CC 23.137851 77 0 2098 0 KEEP - 2300003K06Rik NO MNNG_4 chr12 109741400 109741400 G A intronic Eml1 NA NA exonic Eml1 synonymous SNV uc007ozp.1:c.G513A:p.Q171Q exonic ENSMUSG00000058070 synonymous SNV ENSMUST00000109857:c.G459A:p.Q153Q 12qF1 NA NA chr12 109741400 TCAxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 186 0 0 87.241899 0.576271 0.02 0.973996 25 34 683 885 60 60 0 0 GG 28.270881 94 0 2608 0 KEEP + Eml1 YES MNNG_4 chr12 111840048 111840048 G A exonic Dync1h1 synonymous SNV NM_030238:c.G234A:p.E78E exonic Dync1h1 synonymous SNV uc007pbo.1:c.G234A:p.E78E exonic ENSMUSG00000018707 synonymous SNV ENSMUST00000018851:c.G234A:p.E78E 12qF1 NA NA chr12 111840048 GGAxCGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162446 0.162467 0.999869 38 0 0 14.764079 0.461538 0.02 -0.113978 7 6 189 158 60 60 0 0 GG 6.314259 21 0 573 0 KEEP + Dync1h1 YES MNNG_4 chr12 111890000 111890000 G A exonic Dync1h1 nonsynonymous SNV NM_030238:c.G9676A:p.E3226K exonic Dync1h1 nonsynonymous SNV uc007pbo.1:c.G9676A:p.E3226K exonic ENSMUSG00000018707 nonsynonymous SNV ENSMUST00000018851:c.G9676A:p.E3226K 12qF1 NA NA chr12 111890000 CAAxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 79 2 0 46.19189 0.68 0.02 -0.219177 8 17 226 449 60 60 0 0 GG 11.731557 39 0 1113 0 KEEP + Dync1h1 YES MNNG_4 chr12 111897301 111897301 G A exonic Dync1h1 nonsynonymous SNV NM_030238:c.G11686A:p.E3896K exonic Dync1h1 nonsynonymous SNV uc007pbo.1:c.G11686A:p.E3896K exonic ENSMUSG00000018707 nonsynonymous SNV ENSMUST00000018851:c.G11686A:p.E3896K 12qF1 NA NA chr12 111897301 AGGxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 66 0 0 31.669092 0.5 0.02 -0.236667 13 13 343 333 60 60 0 0 GG 9.926876 33 0 936 0 KEEP + Dync1h1 YES MNNG_4 chr12 112686603 112686603 T C intronic Tnfaip2 NA NA intronic Tnfaip2 NA NA intronic ENSMUSG00000021281 NA NA 12qF1 NA NA chr12 112686603 CAGxCCC T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 153 0 0 50.833326 0.362069 0.02 1.088925 37 21 936 573 60 60 0 0 TT 22.232617 74 0 1996 0 KEEP + Tnfaip2 NO MNNG_4 chr12 112723444 112723444 G A exonic Gm266 stopgain SNV NM_001033248:c.C538T:p.Q180X exonic Gm266 stopgain SNV uc007pdc.2:c.C538T:p.Q180X exonic ENSMUSG00000010529 stopgain SNV ENSMUST00000010673:c.C538T:p.Q180X 12qF1 NA NA chr12 112723444 CCTxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.899314 0.899314 1 108 1 0 66.414705 0.658537 0.02 -0.367612 14 27 370 650 60 60 0 0 GG 17.936784 60 0 1528 0 KEEP - Gm266 YES MNNG_4 chr12 113048170 113048170 G A exonic Xrcc3 nonsynonymous SNV NM_028875:c.C199T:p.H67Y exonic Xrcc3 nonsynonymous SNV uc007pdz.1:c.C199T:p.H67Y exonic ENSMUSG00000021287 nonsynonymous SNV ENSMUST00000127281:c.C199T:p.H67Y 12qF1 NA NA chr12 113048170 GATxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.999859 34 0 0 11.591085 0.454545 0.02 -0.096436 6 5 167 125 60 60 0 0 GG 5.414093 18 0 501 0 KEEP - Xrcc3 YES MNNG_4 chr12 113413997 113413997 G A exonic Kif26a nonsynonymous SNV NM_001097621:c.G2473A:p.D825N exonic Kif26a nonsynonymous SNV uc007pem.1:c.G2473A:p.D825N exonic ENSMUSG00000021294 nonsynonymous SNV ENSMUST00000128402:c.G2473A:p.D825N 12qF1 NA NA chr12 113413997 CGGxACG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668494 0.668523 0.999957 61 1 0 32.754548 0.482759 0.02 -0.2529 15 14 406 349 60 60 0 0 GG 7.813099 26 0 711 0 KEEP + Kif26a YES MNNG_4 chr12 113897487 113897487 C T exonic Akt1 synonymous SNV NM_001165894:c.G288A:p.R96R exonic Akt1 synonymous SNV uc007pex.2:c.G288A:p.R96R exonic ENSMUSG00000001729 synonymous SNV ENSMUST00000128300:c.G288A:p.R96R 12qF1 NA NA chr12 113897487 TTCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 100 0 0 41.264354 0.551724 0.02 -0.254234 13 16 349 423 60 60 0 0 CC 17.133006 57 0 1578 0 KEEP - Akt1 YES MNNG_4 chr12 11393779 11393779 C T exonic Vsnl1 nonsynonymous SNV NM_012038:c.G4A:p.G2R exonic Vsnl1 nonsynonymous SNV uc011ykf.1:c.G4A:p.G2R exonic ENSMUSG00000054459 nonsynonymous SNV ENSMUST00000072299:c.G4A:p.G2R 12qA1.1 NA NA chr12 11393779 TCCxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 57 0 0 13.844401 0.368421 0.02 -0.165225 12 7 333 160 60 60 0 0 CC 10.197617 34 0 919 0 KEEP - Vsnl1 YES MNNG_4 chr12 114200579 114200579 G A intronic Brf1 NA NA intronic Brf1 NA NA intronic ENSMUSG00000011158 NA NA 12qF1 NA NA chr12 114200579 CAGxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139743 0.139832 0.999366 32 0 0 12.244976 0.416667 0.02 -0.105215 7 5 191 134 60 60 0 0 GG 5.113654 17 0 479 0 KEEP - Brf1 YES MNNG_4 chr12 114200700 114200700 G A exonic Brf1 synonymous SNV NM_028193:c.C1656T:p.S552S exonic Brf1 synonymous SNV uc007pfn.1:c.C1656T:p.S552S exonic ENSMUSG00000011158 synonymous SNV ENSMUST00000011302:c.C1656T:p.S552S 12qF1 NA NA chr12 114200700 TGGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 83 0 0 40.52109 0.571429 0.02 -0.245456 12 16 320 412 60 60 0 0 GG 13.472422 45 0 1165 0 KEEP - Brf1 YES MNNG_4 chr12 114708856 114708856 A T intergenic "Tmem121(dist=281123),Adam6b(dist=18920)" NA NA ncRNA_intronic abParts NA NA downstream ENSMUSG00000076628 NA NA 12qF1 "Score=0.928824;Name=No.26243,chr12:114687921" NA chr12 114708856 CTGxAGA A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 195 2 2 7.173575 0.064935 0.02 0.807431 72 5 1904 128 60 29 0 0 AA 22.36952 84 1 2311 27 KEEP NA Tmem121 NO MNNG_4 chr12 115064955 115064955 G A intergenic "Adam6a(dist=280330),NONE(dist=NONE)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076648 synonymous SNV ENSMUST00000103457:c.C252T:p.G84G 12qF1 NA NA chr12 115064955 TCGxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 246 17 0 81.318798 0.443038 0.02 0.808477 44 35 1186 882 60 60 0 0 GG 43.004608 143 0 3896 0 KEEP NA Adam6a YES MNNG_4 chr12 12944270 12944270 C T exonic Mycn nonsynonymous SNV NM_008709:c.G931A:p.A311T exonic Mycn nonsynonymous SNV uc007nbf.1:c.G907A:p.A303T exonic ENSMUSG00000037169 nonsynonymous SNV ENSMUST00000130990:c.G931A:p.A311T 12qA1.1 NA NA chr12 12944270 GTGxTCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 143 4 0 83.774355 0.607143 0.02 1.001741 22 34 596 840 60 60 0 1 CC 19.473537 65 0 1769 0 KEEP - Mycn YES MNNG_4 chr12 14157217 14157217 C T exonic Fam84a nonsynonymous SNV NM_029007:c.G314A:p.G105D exonic Fam84a nonsynonymous SNV uc007nbn.1:c.G314A:p.G105D exonic ENSMUSG00000020607 nonsynonymous SNV ENSMUST00000020926:c.G314A:p.G105D 12qA1.1 NA NA chr12 14157217 GCGxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 143 0 0 79.448967 0.704545 0.02 -0.385576 13 31 358 763 60 60 0 0 CC 24.231211 81 0 2153 0 KEEP - Fam84a YES MNNG_4 chr12 16984600 16984600 C T exonic Rock2 nonsynonymous SNV NM_009072:c.C3940T:p.P1314S exonic Rock2 nonsynonymous SNV uc007ncj.1:c.C622T:p.P208S exonic ENSMUSG00000020580 nonsynonymous SNV ENSMUST00000168024:c.C3022T:p.P1008S 12qA1.1 NA NA chr12 16984600 GCGxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 96 0 0 27.435897 0.387097 0.02 -0.271791 19 12 523 307 60 60 0 0 CC 14.738909 49 0 1370 0 KEEP + Rock2 YES MNNG_4 chr12 17554067 17554067 C T intronic Odc1 NA NA intronic Odc1 NA NA intronic ENSMUSG00000011179 NA NA 12qA1.1 NA NA chr12 17554067 TCAxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999999 66 1 0 29.789184 0.571429 0.02 -0.19284 9 12 235 303 60 60 0 0 CC 10.826258 36 0 975 0 KEEP + Odc1 YES MNNG_4 chr12 20145317 20145317 G A intergenic "5730507C01Rik(dist=1603257),1700030C10Rik(dist=664936)" NA NA intergenic "AK149188(dist=706381),Gm4983(dist=475638)" NA NA intergenic "ENSMUSG00000077010(dist=247401),ENSMUSG00000073184(dist=276482)" NA NA 12qA1.2 "Score=0.98834;Name=No.20921,chr12:19440056" NA chr12 20145317 CAAxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 321 5 57 12.659379 0.148936 0.02 0.807402 40 7 1065 179 55 35 0 0 GG 60.155047 200 0 5545 0 KEEP NA 5730507C01Rik YES MNNG_4 chr12 20280812 20280812 G A intergenic "5730507C01Rik(dist=1738752),1700030C10Rik(dist=529441)" NA NA intergenic "AK149188(dist=841876),Gm4983(dist=340143)" NA NA intergenic "ENSMUSG00000077010(dist=382896),ENSMUSG00000073184(dist=140987)" NA NA 12qA1.2 "Score=0.95768;Name=No.20186,chr12:19092918" NA chr12 20280812 ATAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 367 8 34 15.320291 0.097826 0.02 0.676144 83 9 2256 238 60 60 0 0 GG 67.351948 224 0 6364 0 KEEP NA 5730507C01Rik YES MNNG_4 chr12 21260310 21260310 C T exonic Asap2 nonsynonymous SNV NM_001004364:c.C2365T:p.P789S exonic Asap2 nonsynonymous SNV uc011ykr.1:c.C1927T:p.P643S exonic ENSMUSG00000052632 nonsynonymous SNV ENSMUST00000090834:c.C1927T:p.P643S 12qA1.2 NA NA chr12 21260310 CCAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 168 2 0 50.078778 0.410714 0.02 1.009349 33 23 880 556 60 60 0 0 CC 27.348501 91 0 2436 0 KEEP + Asap2 YES MNNG_4 chr12 3451696 3451696 C T exonic Asxl2 synonymous SNV NM_001270988:c.C178T:p.L60L exonic Asxl2 synonymous SNV uc007mwr.2:c.C4T:p.L2L exonic ENSMUSG00000037486 synonymous SNV ENSMUST00000092003:c.C178T:p.L60L 12qA1.1 NA NA chr12 3451696 ATGxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999998 72 2 0 16.608281 0.368421 0.02 -0.175365 12 7 333 187 60 60 0 0 CC 10.227327 34 0 961 0 KEEP + Asxl2 YES MNNG_4 chr12 3866049 3866049 A G exonic Dnmt3a nonsynonymous SNV NM_001271753:c.A233G:p.D78G exonic Dnmt3a nonsynonymous SNV uc007mxa.2:c.A233G:p.D78G exonic ENSMUSG00000020661 nonsynonymous SNV ENSMUST00000172509:c.A11G:p.D4G 12qA1.1 NA NA chr12 3866049 AGGxCTC A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 68 0 0 23.083307 0.30303 0.02 -0.289228 23 10 576 271 60 60 0 0 AA 8.690953 29 0 753 0 KEEP + Dnmt3a NO MNNG_4 chr12 38863264 38863264 C T intronic Dgkb NA NA exonic Dgkb nonsynonymous SNV uc007nki.1:c.C845T:p.A282V exonic ENSMUSG00000036095 nonsynonymous SNV ENSMUST00000084204:c.C845T:p.A282V 12qA3 NA NA chr12 38863264 CTGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 67 0 0 29.963048 0.733333 0.02 -0.131498 4 11 107 285 60 60 0 0 CC 11.730185 39 0 1081 0 KEEP + Dgkb YES MNNG_4 chr12 3902840 3902840 C T intronic Dnmt3a NA NA intronic Dnmt3a NA NA intronic ENSMUSG00000020661 NA NA 12qA1.1 NA NA chr12 3902840 GGCxAGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 88 0 0 36.517511 0.5 0.02 -0.271765 15 15 413 384 60 60 0 0 CC 13.834987 46 0 1314 0 KEEP + Dnmt3a YES MNNG_4 chr12 39593061 39593061 C T UTR3 Etv1 NA NA UTR3 Etv1 NA NA UTR3 ENSMUSG00000004151 NA NA 12qB1 "Score=0.987334;Name=No.26565,chr13:104147560" NA chr12 39593061 AGGxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 252 0 1 98.221079 0.541667 0.02 0.868763 33 39 904 1012 60 60 0 0 CC 45.034132 150 0 4042 0 KEEP + Etv1 YES MNNG_4 chr12 40949852 40949852 C T upstream "Gm7008,Ifrd1,Mir1938" NA NA ncRNA_exonic AK004585 NA NA exonic ENSMUSG00000035983 synonymous SNV ENSMUST00000038121:c.C109T:p.L37L 12qB1 NA NA chr12 40949852 TCGxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 90 0 0 59.947701 0.631579 0.02 -0.331767 14 24 378 595 60 60 0 0 CC 12.629061 42 0 1137 0 KEEP NA Gm7008 YES MNNG_4 chr12 41561263 41561263 C T exonic Dock4 synonymous SNV NM_172803:c.C5178T:p.S1726S exonic Dock4 synonymous SNV uc007nlj.1:c.C1800T:p.S600S exonic ENSMUSG00000035954 synonymous SNV ENSMUST00000037488:c.C5178T:p.S1726S 12qB1 NA NA chr12 41561263 GTCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 115 0 0 49.925189 0.558824 0.02 -0.29811 15 19 409 510 60 60 0 0 CC 18.34804 61 0 1707 0 KEEP + Dock4 YES MNNG_4 chr12 4236562 4236562 C T UTR3 Ptrhd1 NA NA ncRNA_exonic BC067010 NA NA UTR3 ENSMUSG00000073240 NA NA 12qA1.1 NA NA chr12 4236562 CAGxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099505 0.099721 0.997832 29 0 0 12.373367 0.5 0.02 -0.087666 5 5 133 130 60 60 0 0 CC 4.813006 16 0 453 0 KEEP + Ptrhd1 YES MNNG_4 chr12 4722493 4722493 C T exonic Fam228a synonymous SNV NM_029107:c.G762A:p.Q254Q exonic 4930417G10Rik synonymous SNV uc007myb.1:c.G762A:p.Q254Q exonic ENSMUSG00000079177 synonymous SNV ENSMUST00000111154:c.G762A:p.Q254Q 12qA1.1 NA NA chr12 4722493 TCTxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 95 0 0 66.43859 0.727273 0.02 -0.289328 9 24 248 634 60 60 0 0 CC 13.830732 46 0 1301 0 KEEP - Fam228a YES MNNG_4 chr12 52466386 52466386 C T exonic G2e3 synonymous SNV NM_001015099:c.C1152T:p.N384N exonic G2e3 synonymous SNV uc007nml.2:c.C1152T:p.N384N exonic ENSMUSG00000035293 synonymous SNV ENSMUST00000054308:c.C1152T:p.N384N 12qC1 NA NA chr12 52466386 TAAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 74 2 0 44.215275 0.653846 0.02 -0.227925 9 17 243 434 60 60 0 0 CC 12.030328 40 0 1097 0 KEEP + G2e3 YES MNNG_4 chr12 55284889 55284889 C T exonic Egln3 nonsynonymous SNV NM_028133:c.G592A:p.V198I exonic Egln3 nonsynonymous SNV uc007nns.2:c.G592A:p.V198I exonic ENSMUSG00000035105 nonsynonymous SNV ENSMUST00000039516:c.G592A:p.V198I 12qC1 NA NA chr12 55284889 GGAxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 79 0 0 42.129173 0.64 0.02 -0.21918 9 16 249 416 60 60 0 0 CC 12.318716 41 0 1112 0 KEEP - Egln3 YES MNNG_4 chr12 56076091 56076091 C T exonic Baz1a nonsynonymous SNV NM_013815:c.G392A:p.R131K exonic Baz1a nonsynonymous SNV uc007nnz.2:c.G392A:p.R131K exonic ENSMUSG00000035021 nonsynonymous SNV ENSMUST00000038926:c.G392A:p.R131K 12qC1 NA NA chr12 56076091 TACxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 62 0 0 28.722485 0.5 0.02 -0.19291 11 11 305 301 60 60 0 0 CC 9.324903 31 0 871 0 KEEP - Baz1a YES MNNG_4 chr12 70473204 70473204 G A UTR5 Arf6 NA NA ncRNA_exonic AK179786 NA NA exonic ENSMUSG00000052673 nonsynonymous SNV ENSMUST00000053451:c.C242T:p.A81V 12qC2 NA NA chr12 70473204 GCGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 58 0 0 17.053781 0.307692 0.02 -0.227629 18 8 475 202 60 60 0 0 GG 8.120543 27 0 740 0 KEEP + Arf6 YES MNNG_4 chr12 70474644 70474644 C T UTR3 Arf6 NA NA UTR3 Arf6 NA NA UTR3 ENSMUSG00000044147 NA NA 12qC2 NA NA chr12 70474644 TTCxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 143 0 0 43.94833 0.607143 0.02 -0.245399 11 17 290 440 60 60 0 0 CC 26.152055 87 0 2373 0 KEEP + Arf6 YES MNNG_4 chr12 71995811 71995811 G A intronic Frmd6 NA NA intronic Frmd6 NA NA intronic ENSMUSG00000048285 NA NA 12qC3 NA NA chr12 71995811 GTGxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119602 0.120436 0.993072 24 0 0 29.507949 0.909091 0.02 -0.096436 1 10 28 262 60 60 0 0 GG 3.308596 11 0 305 0 KEEP + Frmd6 YES MNNG_4 chr12 73170757 73170757 G A exonic Gpr135 nonsynonymous SNV NM_181752:c.C1222T:p.P408S exonic Gpr135 nonsynonymous SNV uc007nvc.1:c.C1222T:p.P408S exonic ENSMUSG00000043398 nonsynonymous SNV ENSMUST00000050649:c.C1222T:p.P408S 12qC3 NA NA chr12 73170757 AAGxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 168 0 0 44.310427 0.322581 0.02 0.956447 42 20 1131 517 60 60 0 0 GG 25.467714 85 0 2237 0 KEEP - Gpr135 YES MNNG_4 chr12 73564805 73564805 G A intronic Lrrc9 NA NA intronic Lrrc9 NA NA intronic ENSMUSG00000021090 NA NA 12qC3 NA NA chr12 73564805 GCCxCTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291961 0.292001 0.999863 43 0 0 16.570473 0.411765 0.02 -0.147996 10 7 228 182 60 60 0 0 GG 6.008345 20 0 490 0 KEEP + Lrrc9 YES MNNG_4 chr12 74144624 74144624 G A exonic Six1 synonymous SNV NM_009189:c.C753T:p.L251L exonic Six1 synonymous SNV uc007nwa.2:c.C753T:p.L251L exonic ENSMUSG00000051367 synonymous SNV ENSMUST00000050029:c.C753T:p.L251L 12qC3 NA NA chr12 74144624 TGTxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 145 0 0 14.95497 0.163265 0.02 -0.429644 41 8 1133 206 60 60 0 0 GG 23.455752 78 0 2230 0 KEEP - Six1 YES MNNG_4 chr12 74382348 74382348 G A exonic Trmt5 nonsynonymous SNV NM_029580:c.C1067T:p.P356L exonic Trmt5 nonsynonymous SNV uc007nwf.1:c.C911T:p.P304L exonic ENSMUSG00000034442 nonsynonymous SNV ENSMUST00000055255:c.C1064T:p.P355L 12qC3 NA NA chr12 74382348 ACTxGCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 124 2 0 53.959961 0.52381 0.02 -0.368211 20 22 556 561 60 60 0 0 GG 18.039596 60 0 1693 0 KEEP - Trmt5 YES MNNG_4 chr12 77268334 77268334 G A exonic Esr2 nonsynonymous SNV NM_010157:c.C329T:p.T110I exonic Esr2 nonsynonymous SNV uc007nxu.1:c.C329T:p.T110I exonic ENSMUSG00000021055 nonsynonymous SNV ENSMUST00000110421:c.C329T:p.T110I 12qC3 NA NA chr12 77268334 TGGxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 121 0 0 76.186537 0.555556 0.02 1.026576 24 30 657 780 60 60 0 0 GG 16.826234 56 0 1513 0 KEEP - Esr2 YES MNNG_4 chr12 77428900 77428900 G A exonic Akap5 nonsynonymous SNV NM_001101471:c.G97A:p.A33T exonic Akap5 nonsynonymous SNV uc007nya.2:c.G97A:p.A33T exonic ENSMUSG00000021057 nonsynonymous SNV ENSMUST00000095610:c.G118A:p.A40T 12qC3 NA NA chr12 77428900 ACAxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053885 0.054137 0.995343 27 0 0 6.832126 0.375 0.02 -0.070138 5 3 136 77 60 60 0 0 GG 4.21107 14 0 392 0 KEEP + Akap5 YES MNNG_4 chr12 77433555 77433555 G A UTR3 Akap5 NA NA UTR3 Akap5 NA NA UTR3 ENSMUSG00000021057 NA NA 12qC3 NA NA chr12 77433555 TTAxCTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 84 0 0 37.217776 0.5 0.02 -0.263023 15 15 417 391 60 60 0 0 GG 15.642379 52 0 1479 0 KEEP + Akap5 YES MNNG_4 chr12 77506089 77506089 G A exonic Hspa2 nonsynonymous SNV NM_008301:c.G569A:p.G190D exonic Hspa2 nonsynonymous SNV uc011yoa.1:c.G569A:p.G190D exonic ENSMUSG00000059970 nonsynonymous SNV ENSMUST00000080449:c.G569A:p.G190D 12qC3 NA NA chr12 77506089 AGGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 95 0 0 22.667049 0.261905 0.02 -0.367917 31 11 832 279 60 60 0 0 GG 13.19355 44 0 1157 0 KEEP + Hspa2 YES MNNG_4 chr12 8005450 8005450 C T exonic Apob nonsynonymous SNV NM_009693:c.C3056T:p.T1019I exonic Apob nonsynonymous SNV uc007mzf.2:c.C3056T:p.T1019I exonic ENSMUSG00000020609 nonsynonymous SNV ENSMUST00000037520:c.C3017T:p.T1006I 12qA1.1 NA NA chr12 8005450 CAAxCTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.422559 0.423478 0.997832 41 0 0 24.055445 0.47619 0.02 -0.184097 11 10 293 256 60 60 0 0 CC 4.808922 16 0 430 0 KEEP + Apob YES MNNG_4 chr12 80369689 80369689 C T exonic Zfyve26 synonymous SNV NM_001008550:c.G3999A:p.R1333R exonic Zfyve26 synonymous SNV uc007oag.1:c.G264A:p.R88R exonic ENSMUSG00000066440 synonymous SNV ENSMUST00000021547:c.G3999A:p.R1333R 12qC3 NA NA chr12 80369689 CTCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 196 0 0 39.034868 0.253521 0.02 0.966041 53 18 1453 479 60 60 0 0 CC 28.246041 94 0 2584 0 KEEP - Zfyve26 YES MNNG_4 chr12 82050467 82050467 T C intronic Srsf5 NA NA intronic Srsf5 NA NA intronic ENSMUSG00000021134 NA NA 12qD1 NA NA chr12 82050467 TTTxCCT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 86 0 0 10.119779 0.166667 0.02 -0.263019 25 5 662 136 60 60 0 0 TT 14.69269 49 0 1343 0 KEEP + Srsf5 NO MNNG_4 chr12 82050587 82050587 C T exonic Srsf5 nonsynonymous SNV NM_001079694:c.C547T:p.H183Y exonic Srsf5 nonsynonymous SNV uc007obn.1:c.C547T:p.H183Y exonic ENSMUSG00000021134 nonsynonymous SNV ENSMUST00000094693:c.C547T:p.H183Y 12qD1 NA NA chr12 82050587 AGGxACA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 87 0 0 23.681685 0.366667 0.02 -0.263003 19 11 528 270 60 60 0 0 CC 14.13772 47 0 1334 0 KEEP + Srsf5 YES MNNG_4 chr12 82479803 82479803 G A exonic Gm4787 synonymous SNV NM_001038995:c.C567T:p.N189N exonic Gm4787 synonymous SNV uc007ocb.1:c.C567T:p.N189N exonic ENSMUSG00000072974 synonymous SNV ENSMUST00000062182:c.C567T:p.N189N 12qD1 "Score=0.978068;Name=No.31012,chr8:86013548" NA chr12 82479803 GAGxTTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 266 2 0 159.930341 0.605769 0.02 2.079633 41 63 1094 1602 60 60 0 0 GG 34.814793 125 1 3411 26 KEEP - Gm4787 YES MNNG_4 chr12 82674842 82674842 G A exonic Med6 nonsynonymous SNV NM_027213:c.C563T:p.P188L exonic Med6 nonsynonymous SNV uc007ocl.1:c.C563T:p.P188L exonic ENSMUSG00000002679 nonsynonymous SNV ENSMUST00000002756:c.C563T:p.P188L 12qD1 NA NA chr12 82674842 TCAxGGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 71 1 0 64.467598 0.814815 0.02 -0.236736 5 22 134 596 60 60 0 0 GG 9.926452 33 0 927 0 KEEP - Med6 YES MNNG_4 chr12 85114740 85114740 C T intronic Papln NA NA intronic Papln NA NA intronic ENSMUSG00000021223 NA NA 12qD1 NA NA chr12 85114740 TTGxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 149 0 0 51.202498 0.423077 0.02 1.08888 30 22 820 561 60 60 0 0 CC 23.431328 78 0 2096 0 KEEP + Papln YES MNNG_4 chr12 86561205 86561205 C T intronic Eif2b2 NA NA intronic Eif2b2 NA NA intronic ENSMUSG00000004788 NA NA 12qD2 NA NA chr12 86561205 GATxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.99986 43 0 0 11.638693 0.333333 0.02 -0.131532 10 5 281 134 60 60 0 0 CC 5.716009 19 0 549 0 KEEP + Eif2b2 YES MNNG_4 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 279 10 104 9.893723 0.076923 0.02 0.887168 72 6 1977 162 60 29 0 0 CC 42.407478 141 0 3985 0 KEEP NA Gm2042 NO MNNG_4 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 352 12 103 19.465966 0.13 0.02 2.106681 87 13 2242 300 60 37 0 0 TT 52.605102 175 0 4658 0 KEEP NA Gm2042 NO MNNG_4 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 325 12 42 35.090225 0.173469 0.02 2.34578 81 17 2115 466 60 37 0 0 TT 54.737132 182 0 4974 0 KEEP NA Gm2042 NO MNNG_4 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 107 2 3 20.635443 0.227273 0.02 -0.385672 34 10 905 261 60 60 0 0 CC 13.23384 44 0 1211 0 KEEP NA Gm2042 NO MNNG_4 chr12 92979034 92979034 C T exonic Ston2 nonsynonymous SNV NM_175367:c.G241A:p.A81T exonic Ston2 nonsynonymous SNV uc007okt.2:c.G241A:p.A81T exonic ENSMUSG00000020961 nonsynonymous SNV ENSMUST00000164713:c.G241A:p.A81T 12qD3 NA NA chr12 92979034 CTGxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 36 1 0 7.964684 0.2 0.02 -0.175358 16 4 439 104 60 60 0 0 CC 3.904501 13 0 349 0 KEEP - Ston2 YES MNNG_4 chr12 9587359 9587359 C T exonic Osr1 synonymous SNV NM_011859:c.C729T:p.S243S exonic Osr1 synonymous SNV uc007nao.2:c.C729T:p.S243S exonic ENSMUSG00000048387 synonymous SNV ENSMUST00000057021:c.C729T:p.S243S 12qA1.1 NA NA chr12 9587359 GTCxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 74 0 0 24.105867 0.6 0.02 -0.140287 6 9 165 242 60 60 0 0 CC 14.43787 48 0 1341 0 KEEP + Osr1 YES MNNG_4 chr13 101000717 101000717 G A exonic Naip5 synonymous SNV NM_010870:c.C825T:p.F275F exonic Naip5 synonymous SNV uc007rql.1:c.C825T:p.F275F exonic ENSMUSG00000071203 synonymous SNV ENSMUST00000049789:c.C825T:p.F275F 13qD1 "Score=0.971217;Name=No.34881,chr13:101053441" NA chr13 101000717 AGCxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 421 1 4 68.931732 0.183784 0.02 3.171397 151 34 3893 910 60 60 0 0 GG 51.109726 170 0 4619 0 KEEP - Naip5 YES MNNG_4 chr13 101015011 101015011 G A intronic Naip5 NA NA intronic Naip5 NA NA intronic ENSMUSG00000071203 NA NA 13qD1 "Score=0.971217;Name=No.34881,chr13:101053441" NA chr13 101015011 TAAxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 465 5 14 65.874647 0.161905 0.02 4.442126 176 34 4847 900 60 60 0 0 GG 60.450539 201 0 5719 0 KEEP - Naip5 YES MNNG_4 chr13 101197096 101197096 G A exonic Naip1 synonymous SNV NM_008670:c.C1515T:p.S505S exonic Naip1 synonymous SNV uc007rqr.1:c.C1515T:p.S505S exonic ENSMUSG00000021640 synonymous SNV ENSMUST00000022142:c.C1515T:p.S505S 13qD1 "Score=0.900692;Name=No.34880,chr13:100930003" NA chr13 101197096 AAGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 475 0 62 133.769424 0.320442 0.02 3.302867 123 58 3386 1554 60 60 0 0 GG 64.36643 214 0 5981 0 KEEP - Naip1 YES MNNG_4 chr13 101397794 101397794 G A exonic Rad17 nonsynonymous SNV NM_001044371:c.C1226T:p.P409L exonic Rad17 nonsynonymous SNV uc007rrc.1:c.C1226T:p.P409L exonic ENSMUSG00000021635 nonsynonymous SNV ENSMUST00000022136:c.C1226T:p.P409L 13qD1 NA NA chr13 101397794 AAAxGCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 163 0 0 65.65882 0.402985 0.02 1.009901 40 27 1095 724 60 60 0 0 GG 21.344517 71 0 1974 0 KEEP - Rad17 YES MNNG_4 chr13 105582757 105582757 C T intronic Cwc27 NA NA ncRNA_exonic AK030777 NA NA intronic ENSMUSG00000021715 NA NA 13qD1 NA NA chr13 105582757 CGTxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 105 4 0 61.194808 0.605263 0.02 -0.333142 15 23 408 613 60 60 0 0 CC 16.244965 54 0 1552 0 KEEP - Cwc27 YES MNNG_4 chr13 107602255 107602255 G A intronic Ipo11 NA NA intronic Ipo11 NA NA intronic ENSMUSG00000042590 NA NA 13qD2.1 NA NA chr13 107602255 GCAxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 194 0 0 87.330351 0.373737 0.02 0.729293 62 37 1723 981 60 60 0 0 GG 23.765087 79 0 2258 0 KEEP - Ipo11 YES MNNG_4 chr13 110725537 110725537 C T exonic Pde4d nonsynonymous SNV NM_011056:c.C856T:p.P286S exonic Pde4d nonsynonymous SNV uc007rvm.2:c.C367T:p.P123S exonic ENSMUSG00000021699 nonsynonymous SNV ENSMUST00000117420:c.C166T:p.P56S 13qD2.2 NA NA chr13 110725537 ATCxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161432 0.162467 0.993634 27 0 0 12.323438 0.384615 0.02 -0.113989 8 5 218 137 60 60 0 0 CC 3.609792 12 0 340 0 KEEP + Pde4d YES MNNG_4 chr13 113277969 113277969 G A exonic Il6st nonsynonymous SNV NM_010560:c.G544A:p.V182I exonic Il6st nonsynonymous SNV uc007rwg.2:c.G544A:p.V182I exonic ENSMUSG00000021756 nonsynonymous SNV ENSMUST00000070731:c.G544A:p.V182I 13qD2.2 NA NA chr13 113277969 ATGxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999999 82 0 0 52.729407 0.588235 0.02 -0.306865 14 20 379 532 60 60 0 0 GG 10.527867 35 0 980 0 KEEP + Il6st YES MNNG_4 chr13 113294322 113294322 C T exonic Il6st nonsynonymous SNV NM_010560:c.C2423T:p.P808L exonic Il6st nonsynonymous SNV uc007rwg.2:c.C2423T:p.P808L exonic ENSMUSG00000021756 nonsynonymous SNV ENSMUST00000070731:c.C2423T:p.P808L 13qD2.2 NA NA chr13 113294322 TGCxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986151 0.986153 0.999997 91 0 0 92.468676 0.59322 0.02 1.080083 24 35 648 931 60 60 0 0 CC 8.42228 28 0 784 0 KEEP + Il6st YES MNNG_4 chr13 113695153 113695153 C T intronic Skiv2l2 NA NA intronic Skiv2l2 NA NA intronic ENSMUSG00000016018 NA NA 13qD2.2 NA NA chr13 113695153 CAGxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 80 0 0 43.746665 0.486486 0.02 -0.324383 19 18 520 463 60 60 0 0 CC 11.127855 37 0 1009 0 KEEP - Skiv2l2 YES MNNG_4 chr13 113827687 113827687 C T ncRNA_exonic Mir449b NA NA ncRNA_exonic Mir449b NA NA ncRNA_exonic ENSMUSG00000078027 NA NA 13qD2.2 NA NA chr13 113827687 CTAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.726716 0.739671 0.982485 59 0 0 38.091526 0.5 0.02 -0.280504 16 16 423 401 60 60 0 0 CC 5.713622 19 0 514 0 KEEP + Mir449b YES MNNG_4 chr13 115676890 115676890 C T exonic Itga2 nonsynonymous SNV NM_008396:c.G184A:p.V62I exonic Itga2 nonsynonymous SNV uc007rxw.1:c.G184A:p.V62I exonic ENSMUSG00000015533 nonsynonymous SNV ENSMUST00000056117:c.G184A:p.V62I 13qD2.2 NA NA chr13 115676890 CAAxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 429 1 0 255.56413 0.549451 0.02 2.992975 82 100 2232 2623 60 60 0 0 CC 57.426668 191 0 5303 0 KEEP - Itga2 YES MNNG_4 chr13 117700169 117700169 T C intronic Parp8 NA NA intronic Parp8 NA NA intronic ENSMUSG00000021725 NA NA 13qD2.3 NA NA chr13 117700169 TCAxATT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 61 0 0 31.940478 0.545455 0.02 -0.192866 10 12 251 328 60 60 0 0 TT 8.7185 29 0 769 0 KEEP - Parp8 NO MNNG_4 chr13 117700193 117700193 C T exonic Parp8 nonsynonymous SNV NM_001081009:c.G694A:p.D232N exonic Parp8 nonsynonymous SNV uc007ryj.1:c.G577A:p.D193N exonic ENSMUSG00000021725 nonsynonymous SNV ENSMUST00000022239:c.G694A:p.D232N 13qD2.3 NA NA chr13 117700193 CATxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999998 72 0 0 41.22488 0.533333 0.02 -0.263048 14 16 392 426 60 60 0 0 CC 9.92002 33 0 931 0 KEEP - Parp8 YES MNNG_4 chr13 11960404 11960404 C T exonic Ryr2 synonymous SNV NM_023868:c.G753A:p.E251E exonic Ryr2 synonymous SNV uc007plf.1:c.G732A:p.E244E exonic ENSMUSG00000021313 synonymous SNV ENSMUST00000170156:c.G732A:p.E244E 13qA1 NA NA chr13 11960404 ATGxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 129 0 0 77.828767 0.516667 0.02 1.071306 29 31 792 811 60 60 0 0 CC 15.939981 53 0 1465 0 KEEP - Ryr2 YES MNNG_4 chr13 12522070 12522070 C T exonic Heatr1 nonsynonymous SNV NM_144835:c.C4633T:p.L1545F exonic Heatr1 nonsynonymous SNV uc007plk.1:c.C4633T:p.L1545F exonic ENSMUSG00000050244 nonsynonymous SNV ENSMUST00000059270:c.C4633T:p.L1545F 13qA1 NA NA chr13 12522070 GGAxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 121 0 0 66.122274 0.529412 0.02 1.150527 24 27 667 686 60 60 0 0 CC 15.932666 53 0 1473 0 KEEP + Heatr1 YES MNNG_4 chr13 21410785 21410785 G A exonic Gpx6 nonsynonymous SNV NM_145451:c.G499A:p.E167K exonic Gpx6 nonsynonymous SNV uc007pqa.1:c.G499A:p.E167K exonic ENSMUSG00000004341 nonsynonymous SNV ENSMUST00000004453:c.G499A:p.E167K 13qA3.1 NA NA chr13 21410785 CCAxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 153 0 0 64.471829 0.448276 0.02 1.08878 32 26 896 694 60 60 0 0 GG 22.863454 76 0 2187 0 KEEP + Gpx6 YES MNNG_4 chr13 24696711 24696711 G A upstream Gm11346 NA NA upstream Gm11346 NA NA ncRNA_exonic ENSMUSG00000085603 NA NA 13qA3.1 NA NA chr13 24696711 TGGxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 190 0 0 96.611253 0.471264 0.02 0.737401 46 41 1218 1032 60 60 0 0 GG 20.741465 69 0 1861 0 KEEP - Gm11346 YES MNNG_4 chr13 25088969 25088969 A C exonic Mrs2 nonsynonymous SNV NM_001013389:c.T737G:p.I246S exonic Mrs2 nonsynonymous SNV uc007pwu.1:c.T872G:p.I291S exonic ENSMUSG00000021339 nonsynonymous SNV ENSMUST00000021772:c.T872G:p.I291S 13qA3.1 NA NA chr13 25088969 AAAxTCG A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.993703 0.993703 1 129 0 0 12.608768 0.107692 0.02 1.02757 58 7 1491 189 60 60 0 0 AA 16.238696 54 0 1451 0 KEEP - Mrs2 NO MNNG_4 chr13 31901247 31901247 G A UTR3 Foxc1 NA NA UTR3 Foxc1 NA NA UTR3 ENSMUSG00000050295 NA NA 13qA3.2 NA NA chr13 31901247 TTTxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 100 0 0 60.495107 0.464286 0.02 0.912424 30 26 807 649 60 60 0 0 GG 11.729339 39 0 1070 0 KEEP + Foxc1 YES MNNG_4 chr13 32897327 32897327 G A exonic Wrnip1 nonsynonymous SNV NM_030215:c.G928A:p.E310K exonic Wrnip1 nonsynonymous SNV uc007pzs.2:c.G928A:p.E310K exonic ENSMUSG00000021400 nonsynonymous SNV ENSMUST00000021832:c.G928A:p.E310K 13qA3.2 NA NA chr13 32897327 AATxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 75 0 0 39.59308 0.5 0.02 -0.280561 16 16 443 416 60 60 0 0 GG 10.228522 34 0 985 0 KEEP + Wrnip1 YES MNNG_4 chr13 33419221 33419221 G A exonic Serpinb9f nonsynonymous SNV NM_183197:c.G275A:p.R92K exonic Serpinb9f nonsynonymous SNV uc007qag.1:c.G275A:p.R92K exonic ENSMUSG00000038327 nonsynonymous SNV ENSMUST00000075515:c.G275A:p.R92K 13qA3.3 "Score=0.967378;Name=No.32711,chr13:33483331" NA chr13 33419221 ACAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 291 5 0 192.868696 0.565891 0.02 2.063823 56 73 1515 1964 60 60 0 0 GG 38.503104 128 0 3613 0 KEEP + Serpinb9f YES MNNG_4 chr13 33584815 33584815 G A exonic Serpinb9g nonsynonymous SNV NM_011455:c.G710A:p.G237D exonic Serpinb9g nonsynonymous SNV uc007qah.2:c.G710A:p.G237D exonic ENSMUSG00000057726 nonsynonymous SNV ENSMUST00000081927:c.G710A:p.G237D 13qA3.3 "Score=0.972254;Name=No.32712,chr13:33487241" NA chr13 33584815 AGGxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 114 0 0 72.471035 0.526316 0.02 1.000368 27 30 708 753 57 57 0 0 GG 12.931994 43 0 1166 0 KEEP + Serpinb9g YES MNNG_4 chr13 34119998 34119998 G A exonic Ripk1 nonsynonymous SNV NM_009068:c.G1421A:p.G474D exonic Ripk1 nonsynonymous SNV uc007qax.1:c.G1421A:p.G474D exonic ENSMUSG00000021408 nonsynonymous SNV ENSMUST00000021844:c.G1421A:p.G474D 13qA3.3 NA NA chr13 34119998 CAGxTAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 140 0 0 53.316862 0.370968 0.02 0.956572 39 23 1033 601 60 60 0 0 GG 18.012416 60 0 1645 0 KEEP + Ripk1 YES MNNG_4 chr13 35993132 35993132 G A intronic Rpp40 NA NA intronic Rpp40 NA NA intronic ENSMUSG00000021418 NA NA 13qA3.3 NA NA chr13 35993132 ACAxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.667074 0.668523 0.997832 51 1 0 38.128764 0.517241 0.02 -0.254253 14 15 380 397 60 60 0 0 GG 4.81318 16 0 457 0 KEEP - Rpp40 YES MNNG_4 chr13 36060735 36060735 G A exonic Ppp1r3g nonsynonymous SNV NM_029628:c.G268A:p.A90T exonic Ppp1r3g nonsynonymous SNV uc007qci.2:c.G268A:p.A90T exonic ENSMUSG00000050423 nonsynonymous SNV ENSMUST00000132661:c.G268A:p.A90T 13qA3.3 NA NA chr13 36060735 CAGxCGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999998 91 0 0 76.110774 0.576923 0.02 1.035372 22 30 596 772 60 60 0 0 GG 9.918741 33 0 885 0 KEEP + Ppp1r3g YES MNNG_4 chr13 38021667 38021667 G A exonic Rreb1 nonsynonymous SNV NM_001177869:c.G1132A:p.A378T exonic Rreb1 nonsynonymous SNV uc007qdb.2:c.G1132A:p.A378T exonic ENSMUSG00000039087 nonsynonymous SNV ENSMUST00000037232:c.G886A:p.A296T 13qA3.3 NA NA chr13 38021667 CCGxCGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 165 0 0 109.025929 0.52381 0.02 0.754854 40 44 1080 1133 60 60 0 0 GG 20.655594 69 0 1822 0 KEEP + Rreb1 YES MNNG_4 chr13 41230502 41230502 G A intergenic "Gcm2(dist=25145),Elovl2(dist=47249)" NA NA intergenic "Gcm2(dist=24950),Elovl2(dist=47249)" NA NA exonic ENSMUSG00000038651 synonymous SNV ENSMUST00000124093:c.G669A:p.R223R 13qA3.3 NA NA chr13 41230502 GAGxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 122 0 0 36.46973 0.384615 0.02 -0.341965 24 15 661 406 60 60 0 0 GG 18.951208 63 0 1786 0 KEEP NA Gcm2 YES MNNG_4 chr13 42254796 42254796 G A exonic Hivep1 synonymous SNV NM_007772:c.G5142A:p.K1714K exonic Hivep1 synonymous SNV uc007qfk.1:c.G5142A:p.K1714K exonic ENSMUSG00000021366 synonymous SNV ENSMUST00000060148:c.G5142A:p.K1714K 13qA4 NA NA chr13 42254796 GAAxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 185 0 0 61.444097 0.366197 0.02 0.97483 45 26 1248 693 60 60 0 0 GG 24.666389 82 0 2325 0 KEEP + Hivep1 YES MNNG_4 chr13 43493981 43493981 G A exonic Nol7 nonsynonymous SNV NM_023554:c.G208A:p.A70T exonic Nol7 nonsynonymous SNV uc007qgb.1:c.G208A:p.A70T exonic ENSMUSG00000063200 nonsynonymous SNV ENSMUST00000071926:c.G208A:p.A70T 13qA4 NA NA chr13 43493981 CAGxCGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.551689 0.552887 0.997832 43 0 0 29.594968 0.5 0.02 -0.219183 12 12 328 311 60 60 0 0 GG 4.812268 16 0 439 0 KEEP + Nol7 YES MNNG_4 chr13 45002113 45002113 G A intronic Jarid2 NA NA intronic Jarid2 NA NA intronic ENSMUSG00000038518 NA NA 13qA5 NA NA chr13 45002113 TGGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.999859 52 0 0 36.24384 0.5 0.02 -0.262446 15 15 385 381 60 60 0 0 GG 5.397034 18 0 469 0 KEEP + Jarid2 YES MNNG_4 chr13 45505883 45505883 G A UTR3 Mylip NA NA UTR3 Mylip NA NA UTR3 ENSMUSG00000038175 NA NA 13qA5 NA NA chr13 45505883 TGCxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 207 0 0 71.636223 0.418919 0.02 0.851618 43 31 1067 787 60 60 0 0 GG 29.097827 97 0 2412 0 KEEP + Mylip YES MNNG_4 chr13 48586325 48586325 G A exonic Zfp169 nonsynonymous SNV NM_001164575:c.C694T:p.P232S exonic Zfp169 nonsynonymous SNV uc007qig.2:c.C694T:p.P232S exonic ENSMUSG00000050954 nonsynonymous SNV ENSMUST00000050188:c.C655T:p.P219S 13qA5 NA NA chr13 48586325 CAGxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 0.999999 85 0 0 37.152053 0.46875 0.02 -0.280421 17 15 451 396 60 60 0 0 GG 10.829398 36 0 1026 0 KEEP - Zfp169 YES MNNG_4 chr13 48681511 48681511 G A exonic Ptpdc1 synonymous SNV NM_207232:c.C1629T:p.S543S exonic Ptpdc1 synonymous SNV uc007qii.1:c.C1629T:p.S543S exonic ENSMUSG00000038042 synonymous SNV ENSMUST00000035824:c.C1629T:p.S543S 13qA5 NA NA chr13 48681511 AGGxCTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 166 5 0 85.652898 0.444444 0.02 0.827372 45 36 1181 926 60 60 0 0 GG 21.016268 70 0 1895 0 KEEP - Ptpdc1 YES MNNG_4 chr13 51514183 51514183 G A exonic S1pr3 synonymous SNV NM_010101:c.G30A:p.Q10Q exonic S1pr3 synonymous SNV uc007qmf.2:c.G30A:p.Q10Q exonic ENSMUSG00000067586 synonymous SNV ENSMUST00000087978:c.G30A:p.Q10Q 13qA5 NA NA chr13 51514183 CCAxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 93 0 0 66.104551 0.609756 0.02 -0.359476 16 25 443 661 60 60 0 0 GG 11.129932 37 0 1048 0 KEEP + S1pr3 YES MNNG_4 chr13 53208425 53208425 G A exonic Ror2 nonsynonymous SNV NM_013846:c.C1378T:p.H460Y exonic Ror2 nonsynonymous SNV uc007qnj.1:c.C1378T:p.H460Y exonic ENSMUSG00000021464 nonsynonymous SNV ENSMUST00000021918:c.C1378T:p.H460Y 13qB1 NA NA chr13 53208425 TGTxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490485 0.490544 0.999879 48 0 0 14.601153 0.304348 0.02 -0.201648 16 7 442 174 60 60 0 0 GG 6.618073 22 0 628 0 KEEP - Ror2 YES MNNG_4 chr13 53440144 53440144 G A intronic Sptlc1 NA NA intronic Sptlc1 NA NA intronic ENSMUSG00000021468 NA NA 13qB1 NA NA chr13 53440144 CAGxGGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999997 81 0 0 30.875537 0.361111 0.02 -0.315645 23 13 626 349 60 60 0 0 GG 9.563207 32 0 870 0 KEEP - Sptlc1 YES MNNG_4 chr13 55262764 55262764 G A exonic Fgfr4 nonsynonymous SNV NM_008011:c.G1252A:p.E418K exonic Fgfr4 nonsynonymous SNV uc011yzq.1:c.G1252A:p.E418K exonic ENSMUSG00000005320 nonsynonymous SNV ENSMUST00000005452:c.G1252A:p.E418K 13qB1 NA NA chr13 55262764 TTGxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 140 2 0 106.348058 0.606061 0.02 1.001151 26 40 713 1065 60 60 0 0 GG 16.783912 56 0 1570 0 KEEP + Fgfr4 YES MNNG_4 chr13 55364776 55364776 G A exonic Nsd1 synonymous SNV NM_008739:c.G4278A:p.K1426K exonic Nsd1 synonymous SNV uc007qqj.1:c.G3969A:p.K1323K exonic ENSMUSG00000021488 synonymous SNV ENSMUST00000021944:c.G3969A:p.K1323K 13qB1 NA NA chr13 55364776 CAAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.385603 0.387407 0.995343 38 0 0 15.91483 0.35 0.02 -0.175362 13 7 363 182 60 60 0 0 GG 4.211761 14 0 404 0 KEEP + Nsd1 YES MNNG_4 chr13 55600239 55600239 G A intronic Pdlim7 NA NA intronic Pdlim7 NA NA intronic ENSMUSG00000021493 NA NA 13qB1 NA NA chr13 55600239 AGGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 72 0 0 44.351516 0.486486 0.02 -0.324283 19 18 501 469 60 60 0 0 GG 9.019676 30 0 831 0 KEEP - Pdlim7 YES MNNG_4 chr13 56838789 56838789 G A exonic Smad5 nonsynonymous SNV NM_001164041:c.G1348A:p.V450I exonic Smad5 nonsynonymous SNV uc007qsw.2:c.G1348A:p.V450I exonic ENSMUSG00000021540 nonsynonymous SNV ENSMUST00000069557:c.G1348A:p.V450I 13qB1 NA NA chr13 56838789 AAAxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999999 86 0 0 58.588033 0.605263 0.02 -0.341876 15 23 398 587 60 60 0 0 GG 10.509156 35 0 931 0 KEEP + Smad5 YES MNNG_4 chr13 57545624 57545624 G A intronic Spock1 NA NA intronic Spock1 NA NA intronic ENSMUSG00000056222 NA NA 13qB1 NA NA chr13 57545624 TGAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 0.999999 73 0 0 50.268458 0.59375 0.02 -0.280579 13 19 363 506 60 60 0 0 GG 10.830029 36 0 1034 0 KEEP - Spock1 YES MNNG_4 chr13 58496142 58496142 G A exonic Hnrnpk nonsynonymous SNV NM_025279:c.C650T:p.P217L exonic Hnrnpk nonsynonymous SNV uc007qtw.1:c.C443T:p.P148L exonic ENSMUSG00000021546 nonsynonymous SNV ENSMUST00000109849:c.C578T:p.P193L 13qB1 NA NA chr13 58496142 ATGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 131 0 0 85.530886 0.485714 0.02 1.081715 36 34 977 904 60 60 0 0 GG 12.633124 42 0 1170 0 KEEP - Hnrnpk YES MNNG_4 chr13 58667722 58667722 G A intronic Slc28a3 NA NA intronic Slc28a3 NA NA intronic ENSMUSG00000021553 NA NA 13qB1 NA NA chr13 58667722 GCAxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 116 0 0 109.266396 0.646154 0.02 1.027538 23 42 619 1076 60 60 0 0 GG 11.41399 38 0 1036 0 KEEP - Slc28a3 YES MNNG_4 chr13 61669705 61669705 G A exonic Cts3 synonymous SNV NM_026906:c.C201T:p.G67G exonic Cts3 synonymous SNV uc007qwl.2:c.C201T:p.G67G exonic ENSMUSG00000074870 synonymous SNV ENSMUST00000054702:c.C201T:p.G67G 13qB3 NA NA chr13 61669705 CAGxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 223 2 8 62.315634 0.25 0.02 1.947898 90 30 2460 773 60 60 0 0 GG 18.645738 62 0 1709 0 KEEP - Cts3 YES MNNG_4 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 195 0 8 35.985424 0.923077 0.02 -0.227956 1 12 28 318 60 29 0 0 CC 38.806443 129 0 3718 0 KEEP + BC052688 NO MNNG_4 chr13 62108438 62108438 G C intergenic "BC052688(dist=219796),Zfp808(dist=122812)" NA NA intergenic "AK006455(dist=180554),A130040M12Rik(dist=76069)" NA NA intergenic "ENSMUSG00000080451(dist=183414),ENSMUSG00000092904(dist=1389)" NA NA 13qB3 "Score=0.960103;Name=No.33008,chr13:61865990" NA chr13 62108438 ACAxATG G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.83564 0.835716 0.999909 70 0 4 7.709814 0.108108 0.02 -0.324444 33 4 911 113 60 36 0 0 GG 7.219695 24 0 687 0 KEEP NA BC052688 NO MNNG_4 chr13 62227189 62227189 G A intergenic "BC052688(dist=338547),Zfp808(dist=4061)" NA NA ncRNA_intronic A130040M12Rik NA NA intergenic "ENSMUSG00000074868(dist=89666),ENSMUSG00000074867(dist=4087)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:61861764" NA chr13 62227189 GTCxTTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.973965 0.973965 1 149 0 5 10.197181 0.111111 0.02 1.026864 48 6 1177 155 60 29 0 0 GG 25.545809 85 0 2162 0 KEEP NA BC052688 YES MNNG_4 chr13 64540193 64540193 G T exonic Cdk20 synonymous SNV NM_053180:c.G948T:p.G316G exonic Cdk20 synonymous SNV uc007qyx.1:c.G948T:p.G316G exonic ENSMUSG00000021483 nonsynonymous SNV ENSMUST00000109763:c.G761T:p.G254V 13qB3 NA NA chr13 64540193 AGGxCCC G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 88 1 0 7.239168 0.12 0.02 -0.427831 44 6 884 121 60 60 0 0 GG 5.882688 28 3 579 20 KEEP + Cdk20 NO MNNG_4 chr13 65136405 65136405 C T exonic Spata31d1c nonsynonymous SNV NM_001083890:c.C452T:p.T151M exonic 4932441B19Rik nonsynonymous SNV uc007qzb.1:c.C452T:p.T151M exonic ENSMUSG00000074849 nonsynonymous SNV ENSMUST00000099427:c.C452T:p.T151M 13qB3 NA NA chr13 65136405 TGAxGGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 117 0 0 21.916991 0.22 0.02 -0.438036 39 11 939 281 60 60 0 0 CC 18.59482 62 0 1521 0 KEEP + Spata31d1c YES MNNG_4 chr13 66816381 66816381 G A intergenic "2410141K09Rik(dist=274327),Uqcrb(dist=185176)" NA NA ncRNA_intronic AK049212 NA NA intergenic "ENSMUSG00000078996(dist=28490),ENSMUSG00000090632(dist=135898)" NA NA 13qB3 "Score=0.982334;Name=No.34308,chr13:66500822" NA chr13 66816381 ACGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989403 0.989542 0.999859 89 2 3 10.451113 0.101695 0.02 0.965239 53 6 1429 160 60 37 0 0 GG 5.413951 18 0 501 0 KEEP NA 2410141K09Rik YES MNNG_4 chr13 70916363 70916363 C T splicing Adamts16(NM_172053:exon12:c.1600-1G>A) NA NA splicing Adamts16(uc007rcz.1:exon12:c.1600-1G>A) NA NA splicing "ENSMUSG00000049538(ENSMUST00000080145:exon12:c.1600-1G>A,ENSMUST00000123552:exon12:c.1600-1G>A,ENSMUST00000109694:exon12:c.1600-1G>A)" NA NA 13qC1 NA NA chr13 70916363 GTCxTAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78105 0.78106 0.999988 69 0 0 46.572761 0.529412 0.02 -0.298096 16 18 430 482 60 60 0 0 CC 8.121576 27 0 766 0 KEEP - Adamts16 YES MNNG_4 chr13 71023069 71023069 G A exonic 8030423J24Rik synonymous SNV NM_029873:c.G381A:p.R127R intergenic "AK049017(dist=24582),AK007185(dist=601985)" NA NA exonic ENSMUSG00000021600 synonymous SNV ENSMUST00000022091:c.G381A:p.R127R 13qC1 NA NA chr13 71023069 AAGxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457467 0.457757 0.999366 41 0 0 24.355804 0.47619 0.02 -0.192864 11 10 295 259 60 60 0 0 GG 5.113147 17 0 469 0 KEEP + 8030423J24Rik YES MNNG_4 chr13 73699870 73699870 G A exonic Slc6a3 nonsynonymous SNV NM_010020:c.G1150A:p.D384N exonic Slc6a3 nonsynonymous SNV uc007rdn.1:c.G1150A:p.D384N exonic ENSMUSG00000021609 nonsynonymous SNV ENSMUST00000022100:c.G1150A:p.D384N 13qC1 NA NA chr13 73699870 ACAxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.351961 0.353947 0.994391 35 0 0 25.800052 0.555556 0.02 -0.166515 8 10 211 264 60 60 0 0 GG 3.898886 13 0 359 0 KEEP + Slc6a3 YES MNNG_4 chr13 73931555 73931555 C T exonic Slc12a7 synonymous SNV NM_011390:c.C1101T:p.I367I exonic Slc12a7 synonymous SNV uc007rea.1:c.C1188T:p.I396I exonic ENSMUSG00000017756 synonymous SNV ENSMUST00000017900:c.C1101T:p.I367I 13qC1 NA NA chr13 73931555 CATxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 184 0 0 92.142911 0.529412 0.02 1.001154 32 36 874 954 60 60 0 0 CC 25.494772 85 0 2369 0 KEEP + Slc12a7 YES MNNG_4 chr13 74327567 74327567 G A exonic Exoc3 nonsynonymous SNV NM_177333:c.C1145T:p.S382F exonic Exoc3 nonsynonymous SNV uc007reu.1:c.C1145T:p.S382F exonic ENSMUSG00000034152 nonsynonymous SNV ENSMUST00000035934:c.C1145T:p.S382F 13qC1 NA NA chr13 74327567 GGAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 129 0 0 78.19024 0.555556 0.02 1.123879 24 30 661 800 60 60 0 0 GG 19.252002 64 0 1822 0 KEEP - Exoc3 YES MNNG_4 chr13 74808775 74808775 A T exonic Erap1 nonsynonymous SNV NM_030711:c.A1746T:p.E582D exonic Erap1 nonsynonymous SNV uc007rfj.1:c.A1746T:p.E582D exonic ENSMUSG00000021583 nonsynonymous SNV ENSMUST00000022070:c.A1056T:p.E352D 13qC1 NA NA chr13 74808775 AGAxGCA A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 126 0 0 10.244775 0.109091 0.02 1.009041 49 6 1313 156 60 60 0 0 AA 15.039235 50 0 1394 0 KEEP + Erap1 NO MNNG_4 chr13 81650637 81650637 G A intronic Gpr98 NA NA intronic Gpr98 NA NA intronic ENSMUSG00000069170 NA NA 13qC3 NA NA chr13 81650637 AGAxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 98 0 0 51.703721 0.466667 0.02 -0.394504 24 21 665 552 60 60 0 0 GG 11.732538 39 0 1121 0 KEEP - Gpr98 YES MNNG_4 chr13 81732115 81732115 G A exonic Gpr98 synonymous SNV NM_054053:c.C228T:p.D76D exonic Gpr98 synonymous SNV uc007rhn.1:c.C228T:p.D76D exonic ENSMUSG00000069170 synonymous SNV ENSMUST00000095585:c.C228T:p.D76D 13qC3 NA NA chr13 81732115 AAAxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 92 2 0 54.730077 0.55 0.02 -0.359415 18 22 477 562 60 60 0 0 GG 12.558237 42 0 1129 0 KEEP - Gpr98 YES MNNG_4 chr13 89844708 89844708 G A exonic Vcan synonymous SNV NM_001081249:c.C1737T:p.S579S exonic Vcan synonymous SNV uc007rjg.1:c.C1737T:p.S579S exonic ENSMUSG00000021614 synonymous SNV ENSMUST00000022114:c.C1737T:p.S579S 13qC3 NA NA chr13 89844708 TTGxCTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 170 2 0 90.578924 0.404255 0.02 0.675904 56 38 1520 1000 60 60 0 0 GG 19.248412 64 0 1785 0 KEEP - Vcan YES MNNG_4 chr13 93116657 93116657 G A intronic Msh3 NA NA UTR5;UTR3 Msh3;Msh3 NA NA intronic ENSMUSG00000014850 NA NA 13qC3 NA NA chr13 93116657 CAAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 72 0 0 37.193625 0.583333 0.02 -0.210447 10 14 286 376 60 60 0 0 GG 12.0333 40 0 1149 0 KEEP - Msh3 YES MNNG_4 chr13 94387483 94387483 T A exonic Bhmt nonsynonymous SNV NM_016668:c.A1172T:p.E391V exonic Bhmt nonsynonymous SNV uc007rli.1:c.A1172T:p.E391V exonic ENSMUSG00000074768 nonsynonymous SNV ENSMUST00000099309:c.A1172T:p.E391V 13qC3 NA NA chr13 94387483 TGCxCAG T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 86 0 0 40.096536 0.404762 0.02 -0.376979 25 17 669 443 60 57 0 0 TT 9.314177 31 0 845 0 KEEP - Bhmt NO MNNG_4 chr13 94441471 94441471 C T exonic Bhmt2 synonymous SNV NM_022884:c.G63A:p.E21E exonic Bhmt2 synonymous SNV uc007rlk.1:c.G63A:p.E21E exonic ENSMUSG00000042118 synonymous SNV ENSMUST00000015941:c.G63A:p.E21E 13qC3 NA NA chr13 94441471 CACxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 91 0 0 60.831787 0.638889 0.02 -0.315596 13 23 355 601 60 60 0 0 CC 12.933571 43 0 1202 0 KEEP - Bhmt2 YES MNNG_4 chr13 95647145 95647145 G T exonic Otp nonsynonymous SNV NM_011021:c.G115T:p.G39W exonic Otp nonsynonymous SNV uc007rly.1:c.G115T:p.G39W exonic ENSMUSG00000021685 nonsynonymous SNV ENSMUST00000022195:c.G115T:p.G39W 13qD1 NA NA chr13 95647145 CCTxGGG G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 318 0 0 90.781961 0.353982 0.02 1.983257 73 40 1994 1036 60 60 0 0 GG 45.71448 152 0 4233 0 KEEP + Otp NO MNNG_4 chr13 98016715 98016715 G A UTR3 Enc1 NA NA UTR3 Enc1 NA NA UTR3 ENSMUSG00000041773 NA NA 13qD1 NA NA chr13 98016715 AGAxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 119 0 0 61.734373 0.440678 0.02 0.97451 33 26 895 669 60 60 0 0 GG 13.437382 50 1 1369 14 KEEP + Enc1 YES MNNG_4 chr13 98530303 98530303 C T intergenic "Gm5086(dist=176354),Arhgef28(dist=138247)" NA NA intergenic "AK045624(dist=12937),Rgnef(dist=138247)" NA NA exonic ENSMUSG00000057657 nonsynonymous SNV ENSMUST00000080443:c.G241A:p.D81N 13qD1 NA NA chr13 98530303 AGTxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 442 4 71 205.771138 0.558621 0.02 1.915515 64 81 1747 2104 60 60 0 0 CC 66.768926 222 0 6314 0 KEEP NA Gm5086 YES MNNG_4 chr13 98845125 98845125 G A exonic Arhgef28 synonymous SNV NM_012026:c.C304T:p.L102L exonic Rgnef synonymous SNV uc007roh.1:c.C304T:p.L102L exonic ENSMUSG00000021662 synonymous SNV ENSMUST00000022166:c.C301T:p.L101L 13qD1 NA NA chr13 98845125 GCAxACG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 151 1 0 51.410986 0.34375 0.02 1.027491 42 22 1135 588 60 60 0 0 GG 19.517939 65 0 1761 0 KEEP - Arhgef28 YES MNNG_4 chr13 99019172 99019172 T C exonic Utp15 nonsynonymous SNV NM_178918:c.A1499G:p.D500G exonic Utp15 nonsynonymous SNV uc007rom.1:c.A1499G:p.D500G exonic ENSMUSG00000041747 nonsynonymous SNV ENSMUST00000040972:c.A1499G:p.D500G 13qD1 NA NA chr13 99019172 GGGxCGC T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 183 0 0 7.410612 0.065789 0.02 0.931107 71 5 1860 130 60 60 0 0 TT 24.960383 83 0 2251 0 KEEP - Utp15 NO MNNG_4 chr14 118634836 118634836 C T exonic Sox21 nonsynonymous SNV NM_177753:c.G22A:p.V8I exonic Sox21 nonsynonymous SNV uc007uyt.2:c.G22A:p.V8I exonic ENSMUSG00000061517 nonsynonymous SNV ENSMUST00000071156:c.G475A:p.V159I 14qE4 NA NA chr14 118634836 TGAxGTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 170 0 0 85.411169 0.53125 0.02 0.842915 30 34 703 884 70 70 0 0 CC 24.625888 82 0 1957 0 KEEP - Sox21 YES MNNG_4 chr14 122028142 122028142 G A intronic Dock9 NA NA intronic Dock9 NA NA intronic ENSMUSG00000025558 NA NA 14qE5 NA NA chr14 122028142 AAAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120425 0.120436 0.999909 37 0 0 12.193446 0.454545 0.02 -0.096415 6 5 158 131 60 60 0 0 GG 6.918827 23 0 654 0 KEEP - Dock9 YES MNNG_4 chr14 14945046 14945046 G C exonic Psmd6 nonsynonymous SNV NM_025550:c.C1067G:p.T356S exonic Psmd6 nonsynonymous SNV uc007sgj.1:c.C1067G:p.T356S exonic ENSMUSG00000021737 nonsynonymous SNV ENSMUST00000022256:c.C1067G:p.T356S 14qA1 NA NA chr14 14945046 TTGxTCT G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668432 0.668523 0.999863 54 0 0 18.955548 0.321429 0.02 -0.254072 19 9 492 223 60 60 0 0 GG 5.989013 20 0 529 0 KEEP - Psmd6 NO MNNG_4 chr14 15788345 15788345 C T exonic Nek10 nonsynonymous SNV NM_001195229:c.C2750T:p.S917L exonic Nek10 nonsynonymous SNV uc007sgs.2:c.C941T:p.S314L exonic ENSMUSG00000042567 nonsynonymous SNV ENSMUST00000112630:c.C941T:p.S314L 14qA2 NA NA chr14 15788345 GTTxAAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 170 0 0 7.667136 0.084746 0.02 0.982656 54 5 1506 127 60 60 0 0 CC 24.930602 86 1 2451 8 KEEP + Nek10 YES MNNG_4 chr14 21228570 21228570 C T exonic Ttc18 synonymous SNV NM_001163638:c.G1896A:p.Q632Q exonic Ttc18 synonymous SNV uc011zgq.1:c.G1896A:p.Q632Q exonic ENSMUSG00000039543 synonymous SNV ENSMUST00000022348:c.G1932A:p.Q644Q 14qA3 NA NA chr14 21228570 TTCxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 150 0 0 81.391115 0.5 0.02 1.036216 32 32 875 854 60 60 0 0 CC 20.483057 70 1 1972 5 KEEP - Ttc18 YES MNNG_4 chr14 21815112 21815112 G A exonic Vcl nonsynonymous SNV NM_009502:c.G920A:p.G307E exonic Vcl nonsynonymous SNV uc007sky.1:c.G920A:p.G307E exonic ENSMUSG00000021823 nonsynonymous SNV ENSMUST00000022369:c.G920A:p.G307E 14qA3 NA NA chr14 21815112 CTGxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 95 0 0 37.378456 0.454545 0.02 -0.289325 18 15 484 401 60 60 0 0 GG 15.60784 52 0 1450 0 KEEP + Vcl YES MNNG_4 chr14 32111310 32111310 C T exonic Dnah1 synonymous SNV NM_001033668:c.G3858A:p.R1286R exonic Dnahc1 synonymous SNV uc007sxk.2:c.G3858A:p.R1286R exonic ENSMUSG00000019027 synonymous SNV ENSMUST00000048603:c.G3858A:p.R1286R 14qB NA NA chr14 32111310 GTCxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865627 0.865745 0.999863 63 1 0 64.563509 0.615385 0.02 -0.341841 15 24 402 644 60 60 0 0 CC 6.015896 20 0 559 0 KEEP - Dnah1 YES MNNG_4 chr14 42673969 42673969 C T ncRNA_exonic 1700091H14Rik NA NA intergenic "Sftpd(dist=675482),AK047145(dist=388174)" NA NA intronic ENSMUSG00000072610 NA NA 14qB "Score=0.979253;Name=No.51423,chr14:42926925" NA chr14 42673969 CTGxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 99 0 25 21.713224 0.45 0.02 -0.175356 11 9 306 234 36 36 0 0 CC 18.648242 62 0 1718 0 KEEP - 1700091H14Rik YES MNNG_4 chr14 45472915 45472915 C T exonic Ptgdr nonsynonymous SNV NM_008962:c.G1060A:p.E354K exonic Ptgdr nonsynonymous SNV uc007ter.1:c.G1060A:p.E354K exonic ENSMUSG00000071489 nonsynonymous SNV ENSMUST00000095959:c.G1060A:p.E354K 14qC1 NA NA chr14 45472915 ATTxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.793597 0.800245 0.991692 67 2 0 39.147863 0.457143 0.02 -0.306868 19 16 522 420 60 60 0 0 CC 7.520557 25 0 713 0 KEEP - Ptgdr YES MNNG_4 chr14 45899749 45899749 G C exonic Gpr137c nonsynonymous SNV NM_027518:c.G1266C:p.Q422H exonic Gpr137c nonsynonymous SNV uc007tgl.2:c.G1266C:p.Q422H exonic ENSMUSG00000049092 nonsynonymous SNV ENSMUST00000146150:c.G1266C:p.Q422H 14qC1 NA NA chr14 45899749 ACAxAAC G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 136 0 0 33.762758 0.241935 0.02 1.036341 47 15 1302 415 60 60 0 0 GG 17.146979 57 0 1631 0 KEEP + Gpr137c NO MNNG_4 chr14 4881599 4881599 C T intergenic "Gm3264(dist=259108),Gm3264(dist=92582)" NA NA ncRNA_intronic AK015236 NA NA intronic "ENSMUSG00000090539,ENSMUSG00000091209" NA NA 14qA1 "Score=0.978214;Name=No.43975,chr14:4033828" NA chr14 4881599 ATCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1359 8 19 30.777284 0.054264 0.02 7.204577 366 21 10005 561 46 46 0 0 CC 234.499593 780 0 21789 0 KEEP NA Gm3264 YES MNNG_4 chr14 55467253 55467253 C T intergenic "Slc7a8(dist=66530),Homez(dist=4321)" NA NA intergenic "Slc7a8(dist=66530),Homez(dist=4321)" NA NA intronic ENSMUSG00000071425 NA NA 14qC3 NA NA chr14 55467253 TCAxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387402 0.387407 0.999988 51 0 0 33.168916 0.65 0.02 -0.175309 7 13 184 326 60 60 0 0 CC 8.119046 27 0 728 0 KEEP NA Slc7a8 YES MNNG_4 chr14 56120474 56120474 C T intronic Lrrc16b NA NA intronic Lrrc16b NA NA intronic ENSMUSG00000022211 NA NA 14qC3 NA NA chr14 56120474 CTCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 116 2 0 88.5791 0.548387 0.02 1.053883 28 34 755 909 60 60 0 0 CC 12.33307 41 0 1154 0 KEEP + Lrrc16b YES MNNG_4 chr14 56249180 56249180 C T exonic Ipo4 nonsynonymous SNV NM_024267:c.G1709A:p.G570E exonic Ipo4 nonsynonymous SNV uc007tzp.1:c.G1709A:p.G570E exonic ENSMUSG00000002319 nonsynonymous SNV ENSMUST00000047131:c.G1709A:p.G570E 14qC3 NA NA chr14 56249180 AGCxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.551689 0.552887 0.997832 45 0 0 33.681339 0.52 0.02 -0.219196 12 13 324 350 60 60 0 0 CC 4.812475 16 0 444 0 KEEP - Ipo4 YES MNNG_4 chr14 56339249 56339249 A C exonic Rabggta nonsynonymous SNV NM_019519:c.T523G:p.F175V exonic Rabggta nonsynonymous SNV uc007uai.1:c.T523G:p.F175V exonic ENSMUSG00000040472 nonsynonymous SNV ENSMUST00000169237:c.T523G:p.F175V 14qC3 NA NA chr14 56339249 AGAxGTT A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 113 2 0 15.27877 0.177778 0.02 -0.394515 37 8 988 206 60 60 0 0 AA 13.235094 44 0 1232 0 KEEP - Rabggta NO MNNG_4 chr14 58316055 58316055 C T exonic Lats2 stopgain SNV NM_015771:c.G2054A:p.W685X exonic Lats2 stopgain SNV uc007udk.1:c.G2054A:p.W685X exonic ENSMUSG00000021959 stopgain SNV ENSMUST00000022531:c.G2054A:p.W685X 14qC3 NA NA chr14 58316055 ACCxACT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 129 0 0 55.830941 0.428571 0.02 1.106403 32 24 882 610 60 60 0 0 CC 16.838371 56 0 1577 0 KEEP - Lats2 YES MNNG_4 chr14 68427139 68427139 C T exonic Dock5 synonymous SNV NM_177780:c.G2250A:p.T750T exonic Dock5 synonymous SNV uc007ull.1:c.G2250A:p.T750T exonic ENSMUSG00000044447 synonymous SNV ENSMUST00000039135:c.G2250A:p.T750T 14qD1 NA NA chr14 68427139 TTCxGTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552837 0.552887 0.999909 52 0 0 23.385494 0.416667 0.02 -0.218964 14 10 337 257 60 60 0 0 CC 7.208515 24 0 576 0 KEEP - Dock5 YES MNNG_4 chr14 70889962 70889962 C T exonic Bmp1 nonsynonymous SNV NM_009755:c.G1987A:p.D663N exonic Bmp1 nonsynonymous SNV uc007uoc.2:c.G1987A:p.D663N exonic ENSMUSG00000022098 nonsynonymous SNV ENSMUST00000022693:c.G1987A:p.D663N 14qD2 NA NA chr14 70889962 AGTxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 63 0 0 25.895806 0.44 0.02 -0.236698 14 11 379 281 60 60 0 0 CC 8.721808 29 0 809 0 KEEP - Bmp1 YES MNNG_4 chr14 73596986 73596986 C T UTR3 Rb1 NA NA UTR3 Rb1 NA NA UTR3 ENSMUSG00000022105 NA NA 14qD3 NA NA chr14 73596986 GTCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 134 0 0 75.396257 0.447761 0.02 1.107755 37 30 1012 811 60 60 0 0 CC 13.835326 46 0 1277 0 KEEP - Rb1 YES MNNG_4 chr14 8741101 8741101 G A exonic Flnb nonsynonymous SNV NM_134080:c.G3964A:p.V1322I exonic Flnb nonsynonymous SNV uc007sek.1:c.G3964A:p.V1322I exonic ENSMUSG00000025278 nonsynonymous SNV ENSMUST00000052678:c.G3964A:p.V1322I 14qA1 NA NA chr14 8741101 GCTxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641263 0.641347 0.999869 56 1 0 21.542441 0.357143 0.02 -0.245463 18 10 491 247 60 60 0 0 GG 6.305229 21 0 583 0 KEEP + Flnb YES MNNG_4 chr15 10258518 10258518 C T exonic Prlr synonymous SNV NM_011169:c.C1323T:p.F441F exonic Prlr synonymous SNV uc007vfy.2:c.C1323T:p.F441F exonic ENSMUSG00000005268 synonymous SNV ENSMUST00000124470:c.C1323T:p.F441F 15qA1 NA NA chr15 10258518 TTTxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 258 0 0 162.153141 0.520661 0.02 2.133737 58 63 1616 1685 60 60 0 0 CC 38.205845 127 0 3650 0 KEEP + Prlr YES MNNG_4 chr15 10504718 10504718 C T exonic Rai14 synonymous SNV NM_001166408:c.G1995A:p.R665R exonic Rai14 synonymous SNV uc007vgm.1:c.G1908A:p.R636R exonic ENSMUSG00000022246 synonymous SNV ENSMUST00000090339:c.G1995A:p.R665R 15qA1 NA NA chr15 10504718 TTTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 231 0 0 99.363662 0.381818 0.02 2.132863 68 42 1884 1111 60 60 0 0 CC 28.877377 96 0 2723 0 KEEP - Rai14 YES MNNG_4 chr15 12199538 12199538 C T exonic Mtmr12 synonymous SNV NM_172958:c.C1956T:p.I652I exonic Mtmr12 synonymous SNV uc011zrl.1:c.C1026T:p.I342I exonic ENSMUSG00000039458 synonymous SNV ENSMUST00000071993:c.C1026T:p.I342I 15qA1 NA NA chr15 12199538 AATxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963687 0.963774 0.999909 84 0 0 56.119502 0.45098 0.02 1.052844 28 23 774 604 60 60 0 0 CC 7.218557 24 0 673 0 KEEP + Mtmr12 YES MNNG_4 chr15 12781563 12781563 C T exonic Drosha nonsynonymous SNV NM_001130149:c.C1597T:p.P533S exonic Drosha nonsynonymous SNV uc007via.2:c.C1597T:p.P533S exonic ENSMUSG00000022191 nonsynonymous SNV ENSMUST00000022802:c.C541T:p.P181S 15qA1 NA NA chr15 12781563 GGAxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.9982 0.9982 1 211 2 0 91.263676 0.5 0.02 0.851315 37 37 989 959 60 60 0 0 CC 28.250954 94 0 2562 0 KEEP + Drosha YES MNNG_4 chr15 12970833 12970833 C T exonic Cdh6 nonsynonymous SNV NM_007666:c.G1762A:p.V588I exonic Cdh6 nonsynonymous SNV uc007vif.1:c.G1762A:p.V588I exonic ENSMUSG00000039385 nonsynonymous SNV ENSMUST00000036439:c.G1762A:p.V588I 15qA1 NA NA chr15 12970833 AGAxCCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 41 0 0 33.869728 0.65 0.02 -0.18409 7 13 190 333 60 60 0 0 CC 5.112347 17 0 458 0 KEEP - Cdh6 YES MNNG_4 chr15 25729140 25729140 C T intronic Myo10 NA NA intronic Myo10 NA NA intronic ENSMUSG00000022272 NA NA 15qB1 NA NA chr15 25729140 TTCxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717214 0.717315 0.999859 58 0 0 29.33826 0.387097 0.02 -0.271816 19 12 518 326 60 60 0 0 CC 5.414532 18 0 509 0 KEEP + Myo10 YES MNNG_4 chr15 34415350 34415350 C T intronic Hrsp12 NA NA intronic Hrsp12 NA NA intronic ENSMUSG00000022323 NA NA 15qB3.1 NA NA chr15 34415350 GTAxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 187 1 0 95.100367 0.464286 0.02 0.860934 45 39 1208 1017 60 60 0 0 CC 21.643866 72 0 1987 0 KEEP - Hrsp12 YES MNNG_4 chr15 37290519 37290519 C T exonic Grhl2 synonymous SNV NM_026496:c.C1791T:p.I597I exonic Grhl2 synonymous SNV uc007vnf.2:c.C621T:p.I207I exonic ENSMUSG00000022286 synonymous SNV ENSMUST00000022895:c.C1791T:p.I597I 15qB3.1 NA NA chr15 37290519 CATxATT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 86 0 0 41.389758 0.472222 0.02 -0.315645 19 17 537 441 60 60 0 0 CC 10.529274 35 0 1008 0 KEEP + Grhl2 YES MNNG_4 chr15 37934279 37934279 C T intronic Ubr5 NA NA intronic Ubr5 NA NA intronic ENSMUSG00000037487 NA NA 15qB3.1 NA NA chr15 37934279 TATxCTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 37 0 0 19.909357 0.470588 0.02 -0.149056 9 8 248 212 60 60 0 0 CC 4.5122 15 0 426 0 KEEP - Ubr5 YES MNNG_4 chr15 40927597 40927597 C T intronic Zfpm2 NA NA intronic Zfpm2 NA NA intronic ENSMUSG00000022306 NA NA 15qB3.1 NA NA chr15 40927597 CTTxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959857 0.959859 0.999998 85 0 0 58.335284 0.479167 0.02 -0.438407 25 23 687 618 60 60 0 0 CC 10.2281 34 0 973 0 KEEP + Zfpm2 YES MNNG_4 chr15 4732019 4732019 C T intronic C6 NA NA intronic C6 NA NA intronic ENSMUSG00000022181 NA NA 15qA1 NA NA chr15 4732019 AACxATA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 77 0 0 36.735725 0.4 0.02 -0.350682 24 16 663 408 60 60 0 0 CC 8.42368 28 0 812 0 KEEP + C6 YES MNNG_4 chr15 47572806 47572806 C T exonic Csmd3 nonsynonymous SNV NM_001081391:c.G5819A:p.G1940E exonic Csmd3 nonsynonymous SNV uc007vqr.1:c.G2978A:p.G993E exonic ENSMUSG00000022311 nonsynonymous SNV ENSMUST00000022923:c.G5609A:p.G1870E 15qB3.3 NA NA chr15 47572806 CCCxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 74 0 0 37.985255 0.483871 0.02 -0.270445 16 15 413 401 60 60 0 0 CC 9.926172 33 0 926 0 KEEP - Csmd3 YES MNNG_4 chr15 4999706 4999706 C T intronic C7 NA NA intronic BC157982 NA NA intronic ENSMUSG00000079105 NA NA 15qA1 NA NA chr15 4999706 AGAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 91 0 0 48.381347 0.575758 0.02 -0.306804 14 19 380 491 60 60 1 0 CC 13.188916 44 0 1205 0 KEEP - C7 YES MNNG_4 chr15 51805438 51805438 C T exonic Rad21 synonymous SNV NM_009009:c.G426A:p.E142E exonic Rad21 synonymous SNV uc007vrd.2:c.G426A:p.E142E exonic ENSMUSG00000022314 synonymous SNV ENSMUST00000022927:c.G426A:p.E142E 15qC NA NA chr15 51805438 TATxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 100 2 0 44.089217 0.418605 0.02 -0.377004 25 18 682 482 60 60 0 0 CC 12.635155 42 0 1210 0 KEEP - Rad21 YES MNNG_4 chr15 51807742 51807742 C T exonic Rad21 nonsynonymous SNV NM_009009:c.G277A:p.V93I exonic Rad21 nonsynonymous SNV uc007vrd.2:c.G277A:p.V93I exonic ENSMUSG00000022314 nonsynonymous SNV ENSMUST00000022927:c.G277A:p.V93I 15qC NA NA chr15 51807742 CAAxACC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 70 0 0 32.003896 0.424242 0.02 -0.289303 19 14 524 351 60 60 0 0 CC 8.423319 28 0 805 0 KEEP - Rad21 YES MNNG_4 chr15 63322848 63322848 T C intergenic "Gm20740(dist=11685),Gsdmc(dist=284678)" NA NA intergenic "AK040104(dist=11685),AK015428(dist=244444)" NA NA intergenic "ENSMUSG00000088828(dist=10017),ENSMUSG00000079025(dist=284678)" NA NA 15qD1 "Score=0.928295;Name=No.57964,chr16:32921447" NA chr15 63322848 GGCxCCA T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999991 0.999991 1 246 8 13 13.931541 0.086957 0.02 2.35442 84 8 2254 219 60 60 0 0 TT 35.490519 118 0 3275 0 KEEP NA Gm20740 NO MNNG_4 chr15 63635317 63635317 G C intronic Gsdmc NA NA intronic "Gsdmc,Gsdmc2" NA NA intronic ENSMUSG00000079025 NA NA 15qD1 "Score=0.9193;Name=No.57789,chr15:63721052" NA chr15 63635317 GAAxAAA G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 113 0 0 74.433061 0.528302 0.02 1.132603 25 28 696 770 60 60 0 0 GG 14.439581 48 0 1376 0 KEEP - Gsdmc NO MNNG_4 chr15 6385683 6385683 C T exonic Dab2 nonsynonymous SNV NM_001102400:c.C1297T:p.P433S exonic Dab2 nonsynonymous SNV uc007vdg.1:c.C1297T:p.P433S exonic ENSMUSG00000022150 nonsynonymous SNV ENSMUST00000161812:c.C1297T:p.P433S 15qA1 NA NA chr15 6385683 ACGxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38738 0.387407 0.999931 51 2 0 15.114822 0.35 0.02 -0.175279 13 7 344 174 60 60 0 0 CC 7.515106 25 0 684 0 KEEP + Dab2 YES MNNG_4 chr15 65697473 65697473 C T exonic Efr3a synonymous SNV NM_133766:c.C2185T:p.L729L exonic Efr3a synonymous SNV uc007vzu.1:c.C2185T:p.L729L exonic ENSMUSG00000015002 synonymous SNV ENSMUST00000015146:c.C2185T:p.L729L 15qD1 NA NA chr15 65697473 GCAxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 96 0 0 38.438735 0.4 0.02 -0.350727 24 16 664 425 60 60 0 0 CC 12.02326 40 0 1120 0 KEEP + Efr3a YES MNNG_4 chr15 66569046 66569046 T G exonic Tg nonsynonymous SNV NM_009375:c.T5749G:p.F1917V exonic Tg nonsynonymous SNV uc007wap.1:c.T5749G:p.F1917V exonic ENSMUSG00000053469 nonsynonymous SNV ENSMUST00000065916:c.T5749G:p.F1917V 15qD2 NA NA chr15 66569046 TGCxTCC T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 115 0 0 14.772573 0.152542 0.02 0.983152 50 9 1326 214 60 60 0 0 TT 14.137027 47 0 1309 0 KEEP + Tg NO MNNG_4 chr15 6765791 6765791 T C exonic Osmr synonymous SNV NM_011019:c.A2496G:p.P832P exonic Osmr synonymous SNV uc007vdt.2:c.A2496G:p.P832P exonic ENSMUSG00000022146 synonymous SNV ENSMUST00000022746:c.A2496G:p.P832P 15qA1 NA NA chr15 6765791 GATxGGC T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918088 0.918171 0.999909 73 0 0 123.968511 0.977273 0.02 -0.385447 1 43 27 1056 60 60 0 0 TT 7.206121 24 0 639 0 KEEP - Osmr NO MNNG_4 chr15 71293662 71293662 C T exonic Fam135b synonymous SNV NM_177819:c.G2112A:p.E704E exonic Fam135b synonymous SNV uc011ztr.1:c.G2112A:p.E704E exonic ENSMUSG00000036800 synonymous SNV ENSMUST00000022953:c.G2112A:p.E704E 15qD3 NA NA chr15 71293662 TAAxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 264 2 0 113.69285 0.443396 0.02 2.247821 59 47 1618 1229 60 60 0 0 CC 34.878067 116 0 3221 0 KEEP - Fam135b YES MNNG_4 chr15 7268318 7268318 C T exonic Egflam nonsynonymous SNV NM_178748:c.G130A:p.G44R exonic Egflam nonsynonymous SNV uc007vea.1:c.G130A:p.G44R exonic ENSMUSG00000042961 nonsynonymous SNV ENSMUST00000058593:c.G130A:p.G44R 15qA1 NA NA chr15 7268318 CTCxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739567 0.739671 0.999859 60 0 0 31.915365 0.40625 0.02 -0.280514 19 13 509 351 60 60 0 0 CC 5.413679 18 0 498 0 KEEP - Egflam YES MNNG_4 chr15 73041192 73041192 C T exonic Ptk2 nonsynonymous SNV NM_007982:c.G2845A:p.E949K exonic Ptk2 nonsynonymous SNV uc007wbx.2:c.G2845A:p.E949K exonic ENSMUSG00000022607 nonsynonymous SNV ENSMUST00000110036:c.G2845A:p.E949K 15qD3 NA NA chr15 73041192 ACTxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780958 0.78106 0.999869 61 0 0 34.407169 0.424242 0.02 -0.298128 19 14 530 375 60 60 0 0 CC 6.317635 21 0 606 0 KEEP - Ptk2 YES MNNG_4 chr15 73127105 73127105 C T exonic Ptk2 nonsynonymous SNV NM_007982:c.G1009A:p.A337T exonic Ptk2 nonsynonymous SNV uc007wby.2:c.G1009A:p.A337T exonic ENSMUSG00000022607 nonsynonymous SNV ENSMUST00000057684:c.G1009A:p.A337T 15qD3 NA NA chr15 73127105 CGGxAAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 75 0 0 31.402386 0.424242 0.02 -0.298065 19 14 529 345 60 60 0 0 CC 9.623918 32 0 894 0 KEEP - Ptk2 YES MNNG_4 chr15 8124984 8124984 C T exonic 2410089E03Rik nonsynonymous SNV NM_001162906:c.C245T:p.T82I exonic 2410089E03Rik nonsynonymous SNV uc007ven.2:c.C245T:p.T82I exonic ENSMUSG00000039801 nonsynonymous SNV ENSMUST00000110617:c.C245T:p.T82I 15qA1 NA NA chr15 8124984 CTAxAGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954425 0.954491 0.999931 78 0 0 62.376074 0.530612 0.02 -0.429535 23 26 631 647 60 60 0 0 CC 7.520117 25 0 706 0 KEEP + 2410089E03Rik YES MNNG_4 chr15 82687629 82687629 T C exonic Tcf20 nonsynonymous SNV NM_001114140:c.A50G:p.Y17C exonic Tcf20 nonsynonymous SNV uc007wzo.2:c.A50G:p.Y17C exonic ENSMUSG00000041852 nonsynonymous SNV ENSMUST00000048966:c.A50G:p.Y17C 15qE1 NA NA chr15 82687629 GGGxAGC T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 127 0 0 107.602833 0.56338 0.02 1.171619 31 40 780 1097 60 60 0 0 TT 12.867815 43 0 1116 0 KEEP - Tcf20 NO MNNG_4 chr15 88933383 88933383 T G exonic Tubgcp6 nonsynonymous SNV NM_001163319:c.A3816C:p.E1272D exonic Tubgcp6 nonsynonymous SNV uc007xfh.2:c.A3816C:p.E1272D exonic ENSMUSG00000051786 nonsynonymous SNV ENSMUST00000063284:c.A1056C:p.E352D 15qE3 NA NA chr15 88933383 ACAxTCT T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 205 0 0 156.45241 0.536364 0.02 2.417367 51 59 1295 1613 60 60 0 0 TT 22.855843 76 0 2054 0 KEEP - Tubgcp6 NO MNNG_4 chr15 97962502 97962502 G A UTR3 Pfkm NA NA UTR3 Pfkm NA NA UTR3 ENSMUSG00000033065 NA NA 15qF1 NA NA chr15 97962502 GGAxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.421506 0.423478 0.995343 41 0 0 29.082412 0.571429 0.02 -0.184023 9 12 240 296 60 60 0 0 GG 4.210649 14 0 384 0 KEEP + Pfkm YES MNNG_4 chr16 10506860 10506860 G A exonic Ciita nonsynonymous SNV NM_001243760:c.G790A:p.G264R exonic Ciita nonsynonymous SNV uc007ydq.1:c.G793A:p.G265R exonic ENSMUSG00000022504 nonsynonymous SNV ENSMUST00000023147:c.G562A:p.G188R 16qA1 NA NA chr16 10506860 CAGxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 156 0 0 20.267134 0.178571 0.02 1.106323 46 10 1261 269 60 60 0 0 GG 22.510835 75 0 2047 0 KEEP + Ciita YES MNNG_4 chr16 14114335 14114335 G A exonic Marf1 nonsynonymous SNV NM_001081154:c.C4910T:p.P1637L exonic 4921513D23Rik nonsynonymous SNV uc007ygv.2:c.C4910T:p.P1637L exonic ENSMUSG00000060657 nonsynonymous SNV ENSMUST00000078747:c.C4646T:p.P1549L 16qA1 NA NA chr16 14114335 ACAxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 177 0 0 12.212249 0.104478 0.02 1.009846 60 7 1665 186 60 60 0 0 GG 25.567837 85 0 2389 0 KEEP - Marf1 YES MNNG_4 chr16 14234407 14234407 G A intronic Myh11 NA NA intronic Myh11 NA NA intronic ENSMUSG00000018830 NA NA 16qA1 NA NA chr16 14234407 AATxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.195397 0.196312 0.995343 30 0 0 35.81666 0.928571 0.02 -0.122645 1 13 26 312 60 60 0 0 GG 4.21169 14 0 404 0 KEEP - Myh11 YES MNNG_4 chr16 15772245 15772245 G A exonic Prkdc synonymous SNV NM_011159:c.G7878A:p.Q2626Q exonic Prkdc synonymous SNV uc007yht.1:c.G7878A:p.Q2626Q exonic ENSMUSG00000022672 synonymous SNV ENSMUST00000023352:c.G7878A:p.Q2626Q 16qA2 NA NA chr16 15772245 GCAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 89 1 0 96.048974 0.846154 0.02 -0.341922 6 33 168 876 60 60 0 0 GG 12.334088 41 0 1176 0 KEEP + Prkdc YES MNNG_4 chr16 17452793 17452793 G A exonic Crkl nonsynonymous SNV NM_001277231:c.G223A:p.D75N exonic Crkl nonsynonymous SNV uc007ykv.1:c.G223A:p.D75N exonic ENSMUSG00000006134 nonsynonymous SNV ENSMUST00000006293:c.G223A:p.D75N 16qA3 NA NA chr16 17452793 GGGxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 140 1 0 139.09283 0.857143 0.02 1.089413 8 48 219 1262 60 60 0 0 GG 19.84797 66 0 1849 0 KEEP + Crkl YES MNNG_4 chr16 17452798 17452798 G A exonic Crkl synonymous SNV NM_001277231:c.G228A:p.Q76Q exonic Crkl synonymous SNV uc007ykv.1:c.G228A:p.Q76Q exonic ENSMUSG00000006134 synonymous SNV ENSMUST00000006293:c.G228A:p.Q76Q 16qA3 NA NA chr16 17452798 CCAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 141 1 0 144.505112 0.859649 0.02 1.177941 8 49 223 1312 60 60 0 0 GG 20.441893 68 0 1891 0 KEEP + Crkl YES MNNG_4 chr16 17517637 17517637 G A intronic Lztr1 NA NA intronic Lztr1 NA NA intronic ENSMUSG00000022761 NA NA 16qA3 NA NA chr16 17517637 TAGxCGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 92 0 0 66.799671 0.666667 0.02 -0.341851 13 26 354 652 60 60 0 0 GG 12.632209 42 0 1156 0 KEEP + Lztr1 YES MNNG_4 chr16 18798711 18798711 G A intronic Cdc45 NA NA intronic Cdc45 NA NA intronic ENSMUSG00000000028 NA NA 16qA3 NA NA chr16 18798711 CAGxACT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.987943 0.987943 1 121 0 0 12.267753 0.116667 0.02 0.974121 53 7 1445 183 60 60 0 0 GG 15.030223 50 0 1385 0 KEEP - Cdc45 YES MNNG_4 chr16 20610671 20610671 G A exonic Alg3 synonymous SNV NM_145939:c.C141T:p.S47S exonic Alg3 synonymous SNV uc007yqe.2:c.C141T:p.S47S exonic ENSMUSG00000033809 synonymous SNV ENSMUST00000045918:c.C141T:p.S47S 16qB1 NA NA chr16 20610671 GCAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 156 1 0 16.902831 0.130435 0.02 0.992305 60 9 1664 242 60 60 0 0 GG 20.142902 67 0 1892 0 KEEP - Alg3 YES MNNG_4 chr16 20662622 20662622 G A intronic Psmd2 NA NA intronic Psmd2 NA NA intronic ENSMUSG00000006998 NA NA 16qB1 NA NA chr16 20662622 GCTxCGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 126 0 0 116.768228 0.857143 0.02 -0.438257 7 42 194 1055 60 60 0 0 GG 18.951096 63 0 1796 0 KEEP + Psmd2 YES MNNG_4 chr16 22046714 22046714 G A exonic Senp2 nonsynonymous SNV NM_029457:c.G1713A:p.M571I exonic Senp2 nonsynonymous SNV uc007yry.2:c.G768A:p.M256I exonic ENSMUSG00000022855 nonsynonymous SNV ENSMUST00000115380:c.G1572A:p.M524I 16qB1 "Score=0.918765;Name=No.64565,chrX:91915646" NA chr16 22046714 GATxCCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 81 2 0 63.183481 0.916667 0.02 -0.210364 2 22 56 557 60 60 0 0 GG 12.031333 40 0 1119 0 KEEP + Senp2 YES MNNG_4 chr16 23458271 23458271 G A intronic Masp1 NA NA intronic Masp1 NA NA intronic ENSMUSG00000022887 NA NA 16qB1 NA NA chr16 23458271 AAGxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 98 0 0 106.050442 0.829787 0.02 -0.411897 8 39 212 968 60 60 0 0 GG 14.435327 48 0 1297 0 KEEP - Masp1 YES MNNG_4 chr16 30337574 30337574 G A intronic Atp13a3 NA NA intronic Atp13a3 NA NA intronic ENSMUSG00000022533 NA NA 16qB2 NA NA chr16 30337574 GTGxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 73 0 0 8.923184 0.166667 0.02 -0.263001 25 5 677 124 60 60 0 0 GG 9.323958 31 0 860 0 KEEP - Atp13a3 YES MNNG_4 chr16 33684906 33684906 G A exonic Heg1 nonsynonymous SNV NM_175256:c.G209A:p.G70E exonic Heg1 nonsynonymous SNV uc007zah.1:c.G209A:p.G70E exonic ENSMUSG00000075254 nonsynonymous SNV ENSMUST00000126532:c.G209A:p.G70E 16qB3 NA NA chr16 33684906 GGGxACG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 102 1 0 116.146141 0.877551 0.02 -0.426752 6 43 166 1039 60 60 0 0 GG 11.124638 37 0 1007 0 KEEP + Heg1 YES MNNG_4 chr16 37040600 37040600 G A exonic Polq synonymous SNV NM_001159369:c.G660A:p.E220E exonic Polq synonymous SNV uc007zdp.2:c.G660A:p.E220E exonic ENSMUSG00000034206 synonymous SNV ENSMUST00000071452:c.G660A:p.E220E 16qB3 NA NA chr16 37040600 TGAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 86 0 0 99.104233 0.969697 0.02 -0.289332 1 32 26 858 60 60 0 0 GG 12.334215 41 0 1179 0 KEEP + Polq YES MNNG_4 chr16 3709118 3709118 T C exonic Mefv nonsynonymous SNV NM_001161790:c.A1906G:p.M636V exonic Mefv nonsynonymous SNV uc007xym.2:c.A1816G:p.M606V exonic ENSMUSG00000022534 nonsynonymous SNV ENSMUST00000023180:c.A1816G:p.M606V 16qA1 NA NA chr16 3709118 ACAxCAT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 46 0 0 48.329659 0.842105 0.02 -0.166601 3 16 78 443 60 60 0 0 TT 7.203018 24 0 644 0 KEEP - Mefv NO MNNG_4 chr16 39025112 39025112 G A exonic Igsf11 nonsynonymous SNV NM_170599:c.G1091A:p.G364D exonic Igsf11 nonsynonymous SNV uc007zfp.1:c.G1091A:p.G364D exonic ENSMUSG00000022790 nonsynonymous SNV ENSMUST00000023478:c.G1091A:p.G364D 16qB4 NA NA chr16 39025112 TGGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999998 63 0 0 56.557473 0.869565 0.02 -0.201608 3 20 79 509 60 60 0 0 GG 10.222528 34 0 919 0 KEEP + Igsf11 YES MNNG_4 chr16 42144163 42144163 T A exonic Lsamp synonymous SNV NM_175548:c.T735A:p.P245P exonic Lsamp synonymous SNV uc007zfs.1:c.T735A:p.P245P exonic ENSMUSG00000061080 synonymous SNV ENSMUST00000078873:c.T735A:p.P245P 16qB4 NA NA chr16 42144163 GCCxGCA T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 99 0 0 83.249444 0.848485 0.02 -0.289347 5 28 135 760 60 60 0 0 TT 15.038995 50 0 1385 0 KEEP + Lsamp NO MNNG_4 chr16 4297544 4297544 G A exonic Adcy9 nonsynonymous SNV NM_009624:c.C2693T:p.T898I exonic Adcy9 nonsynonymous SNV uc007xzq.1:c.C2693T:p.T898I exonic ENSMUSG00000005580 nonsynonymous SNV ENSMUST00000005719:c.C2693T:p.T898I 16qA1 NA NA chr16 4297544 CCAxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.421506 0.423478 0.995343 37 0 0 12.90714 0.285714 0.02 -0.184109 15 6 403 155 60 60 0 0 GG 4.19496 14 0 364 0 KEEP - Adcy9 YES MNNG_4 chr16 4614143 4614143 G A exonic Glis2 synonymous SNV NM_031184:c.G1533A:p.G511G exonic Glis2 synonymous SNV uc012aar.1:c.G870A:p.G290G exonic ENSMUSG00000014303 synonymous SNV ENSMUST00000014447:c.G1533A:p.G511G 16qA1 NA NA chr16 4614143 AGGxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58285 0.58293 0.999863 56 0 0 9.561784 0.192308 0.02 -0.22795 21 5 566 127 60 60 0 0 GG 6.015287 20 0 549 0 KEEP + Glis2 YES MNNG_4 chr16 4930797 4930797 G A exonic Mgrn1 nonsynonymous SNV NM_001252437:c.G1402A:p.E468K exonic Mgrn1 nonsynonymous SNV uc007yas.1:c.G157A:p.E53K exonic ENSMUSG00000022517 nonsynonymous SNV ENSMUST00000070658:c.G1399A:p.E467K 16qA1 NA NA chr16 4930797 CGGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 51 0 0 40.632644 0.823529 0.02 -0.149044 3 14 79 374 60 60 0 0 GG 7.518275 25 0 699 0 KEEP + Mgrn1 YES MNNG_4 chr16 52166325 52166325 G A exonic Cblb nonsynonymous SNV NM_001033238:c.G1817A:p.C606Y exonic Cblb nonsynonymous SNV uc007zle.1:c.G1817A:p.C606Y exonic ENSMUSG00000022637 nonsynonymous SNV ENSMUST00000023313:c.G1817A:p.C606Y 16qB5 NA NA chr16 52166325 GATxTCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999998 84 2 0 8.280882 0.106383 0.02 -0.412051 42 5 1116 128 60 60 0 0 GG 10.224797 34 0 927 0 KEEP + Cblb YES MNNG_4 chr16 5248937 5248937 G A intronic Fam86 NA NA intronic Fam86 NA NA intronic ENSMUSG00000022544 NA NA 16qA1 NA NA chr16 5248937 GATxGGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 69 0 0 83.35765 0.903226 0.02 -0.271786 3 28 85 743 60 60 0 0 GG 8.422542 28 0 789 0 KEEP - Fam86 YES MNNG_4 chr16 57142926 57142926 G A exonic Tomm70a synonymous SNV NM_138599:c.G1194A:p.E398E exonic Tomm70a synonymous SNV uc007zmz.1:c.G1194A:p.E398E exonic ENSMUSG00000022752 synonymous SNV ENSMUST00000023433:c.G1239A:p.E413E 16qC1.1 NA NA chr16 57142926 CGAxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 155 0 0 13.227305 0.134615 0.02 1.044094 45 7 1232 188 60 60 0 0 GG 24.059589 80 0 2258 0 KEEP + Tomm70a YES MNNG_4 chr16 57570019 57570019 G A exonic Filip1l nonsynonymous SNV NM_001177871:c.G142A:p.A48T exonic Filip1l nonsynonymous SNV uc007znj.2:c.G142A:p.A48T exonic ENSMUSG00000043336 nonsynonymous SNV ENSMUST00000159414:c.G142A:p.A48T 16qC1.1 NA NA chr16 57570019 AAGxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 71 1 0 14.804131 0.25 0.02 -0.245471 21 7 566 183 60 60 0 0 GG 12.611824 42 0 1131 0 KEEP + Filip1l YES MNNG_4 chr16 57572101 57572101 G A exonic Filip1l nonsynonymous SNV NM_001177871:c.G2224A:p.A742T exonic Filip1l nonsynonymous SNV uc007znj.2:c.G2224A:p.A742T exonic ENSMUSG00000043336 nonsynonymous SNV ENSMUST00000159414:c.G2224A:p.A742T 16qC1.1 NA NA chr16 57572101 TTTxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 141 0 0 15.312312 0.157895 0.02 0.807729 48 9 1328 218 60 60 0 0 GG 21.013994 70 0 1926 0 KEEP + Filip1l YES MNNG_4 chr16 57628844 57628844 G C exonic Col8a1 nonsynonymous SNV NM_007739:c.C415G:p.P139A exonic Col8a1 nonsynonymous SNV uc007znl.1:c.C415G:p.P139A exonic ENSMUSG00000068196 nonsynonymous SNV ENSMUST00000089332:c.C415G:p.P139A 16qC1.1 NA NA chr16 57628844 CTGxTAA G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 124 0 0 122.999413 0.777778 0.02 1.221732 12 42 322 1154 60 60 0 0 GG 18.847102 63 0 1674 0 KEEP - Col8a1 NO MNNG_4 chr16 59086136 59086136 G A exonic Olfr191 nonsynonymous SNV NM_001011807:c.C172T:p.P58S exonic Olfr191 nonsynonymous SNV uc007zop.1:c.C172T:p.P58S exonic ENSMUSG00000057533 nonsynonymous SNV ENSMUST00000078517:c.C172T:p.P58S 16qC1.3 "Score=0.911706;Name=No.61928,chr16:59086942" NA chr16 59086136 TAGxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 197 1 0 192.377269 0.878378 0.02 0.948552 9 65 246 1733 60 60 0 0 GG 32.487352 108 0 3060 0 KEEP - Olfr191 YES MNNG_4 chr16 59167855 59167855 G A exonic Olfr196 nonsynonymous SNV NM_146779:c.C113T:p.T38I exonic Olfr196 nonsynonymous SNV uc007zou.1:c.C113T:p.T38I exonic ENSMUSG00000063603 nonsynonymous SNV ENSMUST00000077027:c.C113T:p.T38I 16qC1.3 NA NA chr16 59167855 ATGxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 174 0 4 9.240875 0.081081 0.02 0.851236 68 6 1838 154 60 60 0 0 GG 24.062099 80 0 2215 0 KEEP - Olfr196 YES MNNG_4 chr16 72989966 72989966 G A exonic Robo1 nonsynonymous SNV NM_019413:c.G2620A:p.V874I exonic Robo1 nonsynonymous SNV uc007zrc.1:c.G313A:p.V105I exonic ENSMUSG00000022883 nonsynonymous SNV ENSMUST00000023600:c.G2620A:p.V874I 16qC3.1 NA NA chr16 72989966 ATGxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 91 0 0 90.074406 0.864865 0.02 -0.33309 5 32 135 812 60 60 0 0 GG 12.632048 42 0 1152 0 KEEP + Robo1 YES MNNG_4 chr16 75945720 75945720 G A intergenic "Samsn1(dist=36209),4930578N18Rik(dist=177138)" NA NA exonic Samsn1 nonsynonymous SNV uc007zrt.1:c.C316T:p.P106S exonic ENSMUSG00000022876 nonsynonymous SNV ENSMUST00000023592:c.C316T:p.P106S 16qC3.1 NA NA chr16 75945720 GTGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.386567 0.387407 0.997832 39 0 0 44.37401 0.8 0.02 -0.175322 4 16 109 411 60 60 0 0 GG 4.812039 16 0 439 0 KEEP NA Samsn1 YES MNNG_4 chr16 85862909 85862909 G A exonic Adamts5 synonymous SNV NM_011782:c.C2739T:p.C913C exonic Adamts5 synonymous SNV uc007ztw.1:c.C2739T:p.C913C exonic ENSMUSG00000022894 synonymous SNV ENSMUST00000023611:c.C2739T:p.C913C 16qC3.3 NA NA chr16 85862909 AAGxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 71 0 0 8.86807 0.131579 0.02 -0.333189 33 5 906 129 60 60 0 0 GG 8.421273 28 0 769 0 KEEP - Adamts5 YES MNNG_4 chr16 88563064 88563064 G A exonic Cldn8 nonsynonymous SNV NM_018778:c.C217T:p.L73F exonic Cldn8 nonsynonymous SNV uc007zuz.2:c.C217T:p.L73F exonic ENSMUSG00000050520 nonsynonymous SNV ENSMUST00000049697:c.C217T:p.L73F 16qC3.3 NA NA chr16 88563064 TAAxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 132 0 0 10.650757 0.117647 0.02 1.044026 45 6 1256 158 60 60 0 0 GG 20.456512 68 0 1954 0 KEEP - Cldn8 YES MNNG_4 chr16 90803533 90803533 G A intronic Urb1 NA NA intronic Urb1 NA NA intronic ENSMUSG00000039929 NA NA 16qC3.3 NA NA chr16 90803533 AGGxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 81 0 0 60.727186 0.814815 0.02 -0.236452 5 22 141 559 60 60 0 0 GG 12.33372 41 0 1169 0 KEEP - Urb1 YES MNNG_4 chr16 91226933 91226933 G A exonic Olig2 nonsynonymous SNV NM_016967:c.G289A:p.D97N exonic Olig2 nonsynonymous SNV uc007zxe.1:c.G289A:p.D97N exonic ENSMUSG00000039830 nonsynonymous SNV ENSMUST00000035608:c.G289A:p.D97N 16qC3.3 NA NA chr16 91226933 AAAxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 232 4 0 13.215307 0.088889 0.02 0.69356 82 8 2245 211 60 60 0 0 GG 31.867826 106 0 2979 0 KEEP + Olig2 YES MNNG_4 chr16 91503660 91503660 G A exonic Ifnar1 nonsynonymous SNV NM_010508:c.G1304A:p.G435E exonic Ifnar1 nonsynonymous SNV uc007zxn.2:c.G1304A:p.G435E exonic ENSMUSG00000022967 nonsynonymous SNV ENSMUST00000023689:c.G1304A:p.G435E 16qC3.3 NA NA chr16 91503660 CTGxATT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 154 0 0 22.712337 0.192982 0.02 1.09754 46 11 1272 296 60 60 0 0 GG 21.056701 70 0 1986 0 KEEP + Ifnar1 YES MNNG_4 chr16 91655647 91655647 G A exonic Son nonsynonymous SNV NM_019973:c.G1036A:p.A346T exonic Son nonsynonymous SNV uc012aii.1:c.G466A:p.A156T exonic ENSMUSG00000022961 nonsynonymous SNV ENSMUST00000023683:c.G1036A:p.A346T 16qC3.3 NA NA chr16 91655647 ATTxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 205 0 0 20.53937 0.131868 0.02 0.596914 79 12 2171 302 60 60 0 0 GG 24.967119 83 0 2348 0 KEEP + Son YES MNNG_4 chr16 93683893 93683893 G A intronic Cbr3 NA NA intronic Cbr3 NA NA intronic ENSMUSG00000022947 NA NA 16qC4 NA NA chr16 93683893 GGGxTTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.990964 0.990964 1 150 2 0 13.578838 0.129032 0.02 0.859796 54 8 1436 201 60 60 0 0 GG 18.345986 61 0 1671 0 KEEP + Cbr3 YES MNNG_4 chr16 93740172 93740172 G A intronic Dopey2 NA NA UTR3 Dopey2 NA NA intronic ENSMUSG00000022946 NA NA 16qC4 NA NA chr16 93740172 CAAxGGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 463 5 0 34.584545 0.120253 0.02 3.097231 139 19 3826 507 60 60 0 0 GG 65.560984 218 0 6174 0 KEEP + Dopey2 YES MNNG_4 chr17 13419494 13419494 C T exonic Smok2a nonsynonymous SNV NM_013741:c.C1091T:p.T364I exonic Smok2a nonsynonymous SNV uc012akl.1:c.C1091T:p.T364I exonic ENSMUSG00000073458 nonsynonymous SNV ENSMUST00000080647:c.C1091T:p.T364I 17qA1 "Score=0.958398;Name=No.65325,chr17:13708775" NA chr17 13419494 CTAxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 363 2 0 153.27977 0.447552 0.02 1.932533 79 64 2154 1655 60 60 0 0 CC 53.477822 182 1 5121 11 KEEP + Smok2a YES MNNG_4 chr17 15089778 15089778 C T exonic Phf10 synonymous SNV NM_024250:c.G801A:p.R267R exonic Phf10 synonymous SNV uc008anj.2:c.G534A:p.R178R exonic ENSMUSG00000023883 nonsynonymous SNV ENSMUST00000168938:c.G553A:p.V185I 17qA2 NA NA chr17 15089778 GTAxCTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.71576 0.717315 0.997832 50 0 0 31.443742 0.419355 0.02 -0.271785 18 13 489 344 60 60 0 0 CC 4.812438 16 0 445 0 KEEP - Phf10 YES MNNG_4 chr17 17980995 17980995 C T exonic Has1 nonsynonymous SNV NM_008215:c.G1345A:p.A449T exonic Has1 nonsynonymous SNV uc008apr.2:c.G1345A:p.A449T exonic ENSMUSG00000003665 nonsynonymous SNV ENSMUST00000003762:c.G1345A:p.A449T 17qA3.2 NA NA chr17 17980995 TTGxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 116 1 0 94.059286 0.654545 0.02 1.017901 19 36 516 923 60 60 0 0 CC 15.623773 52 0 1408 0 KEEP - Has1 YES MNNG_4 chr17 20711311 20711311 C T exonic Vmn2r110 nonsynonymous SNV NM_001104572:c.G2059A:p.V687M exonic Vmn2r110 nonsynonymous SNV uc009vbn.1:c.G2059A:p.V687M exonic ENSMUSG00000091259 nonsynonymous SNV ENSMUST00000169559:c.G2059A:p.V687M 17qA3.2 NA NA chr17 20711311 TCAxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 214 2 69 81.529375 0.551724 0.02 0.991546 26 32 688 836 60 60 0 0 CC 30.668759 102 0 2781 0 KEEP - Vmn2r110 YES MNNG_4 chr17 22755535 22755535 T C exonic Vmn2r112 nonsynonymous SNV NM_001104575:c.T2009C:p.L670S exonic Vmn2r112 nonsynonymous SNV uc009vbp.1:c.T2009C:p.L670S exonic ENSMUSG00000073444 nonsynonymous SNV ENSMUST00000097381:c.T2009C:p.L670S 17qA3.3 "Score=0.929251;Name=No.65563,chr17:22683948" NA chr17 22755535 TCTxGGC T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 509 17 20 35.645235 0.116402 0.02 4.770962 167 22 4410 546 60 60 0 0 TT 75.488241 251 0 6879 0 KEEP + Vmn2r112 NO MNNG_4 chr17 23892891 23892891 A C exonic Flywch1 nonsynonymous SNV NM_153791:c.T1741G:p.F581V exonic Flywch1 nonsynonymous SNV uc008ath.1:c.T1741G:p.F581V exonic ENSMUSG00000040097 nonsynonymous SNV ENSMUST00000045517:c.T1741G:p.F581V 17qA3.3 NA NA chr17 23892891 GGAxCTC A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 102 0 0 15.558257 0.135593 0.02 1.080174 51 8 1299 219 60 60 0 0 AA 11.123749 37 0 987 0 KEEP - Flywch1 NO MNNG_4 chr17 23899291 23899291 C T exonic Flywch1 nonsynonymous SNV NM_153791:c.G524A:p.G175D exonic Flywch1 nonsynonymous SNV uc008ath.1:c.G524A:p.G175D exonic ENSMUSG00000040097 nonsynonymous SNV ENSMUST00000045517:c.G524A:p.G175D 17qA3.3 NA NA chr17 23899291 GCGxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 83 0 0 19.097416 0.272727 0.02 -0.289341 24 9 664 232 60 60 0 0 CC 12.571407 42 0 1126 0 KEEP - Flywch1 YES MNNG_4 chr17 23899957 23899957 C T exonic Flywch1 nonsynonymous SNV NM_153791:c.G239A:p.S80N exonic Flywch1 nonsynonymous SNV uc008ath.1:c.G239A:p.S80N exonic ENSMUSG00000040097 nonsynonymous SNV ENSMUST00000045517:c.G239A:p.S80N 17qA3.3 NA NA chr17 23899957 CTAxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 103 0 0 47.333959 0.465116 0.02 -0.376951 23 20 613 507 60 60 0 0 CC 12.931867 43 0 1181 0 KEEP - Flywch1 YES MNNG_4 chr17 24319466 24319466 C T exonic Tbc1d24 nonsynonymous SNV NM_001163850:c.G1213A:p.D405N exonic Tbc1d24 nonsynonymous SNV uc008aus.2:c.G1213A:p.D405N exonic ENSMUSG00000036473 nonsynonymous SNV ENSMUST00000040474:c.G1213A:p.D405N 17qA3.3 NA NA chr17 24319466 AGTxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 160 0 0 77.063677 0.469697 0.02 0.921313 35 31 973 821 60 60 0 0 CC 22.862205 76 0 2179 0 KEEP - Tbc1d24 YES MNNG_4 chr17 24647058 24647058 C T intronic Traf7 NA NA intronic Traf7 NA NA intronic ENSMUSG00000052752 NA NA 17qA3.3 NA NA chr17 24647058 GTGxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 79 0 0 56.250763 0.578947 0.02 -0.333141 16 22 435 570 60 60 0 0 CC 10.829209 36 0 1020 0 KEEP - Traf7 YES MNNG_4 chr17 24710695 24710695 C T exonic Pkd1 synonymous SNV NM_013630:c.C4410T:p.S1470S exonic Pkd1 synonymous SNV uc012amm.1:c.C1374T:p.S458S exonic ENSMUSG00000032855 synonymous SNV ENSMUST00000164847:c.C1494T:p.S498S 17qA3.3 NA NA chr17 24710695 CTCxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.970732 0.97082 0.999909 85 0 0 76.075569 0.54717 0.02 1.132679 24 29 651 781 60 60 0 0 CC 7.218348 24 0 667 0 KEEP + Pkd1 YES MNNG_4 chr17 24731755 24731755 C T exonic Pkd1 synonymous SNV NM_013630:c.C12247T:p.L4083L exonic Pkd1 synonymous SNV uc008awv.1:c.C12247T:p.L4083L exonic ENSMUSG00000032855 synonymous SNV ENSMUST00000035565:c.C12247T:p.L4083L 17qA3.3 NA NA chr17 24731755 GCTxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 358 0 0 116.994968 0.325 0.02 3.159776 108 52 2963 1360 60 60 0 0 CC 46.564808 155 0 4394 0 KEEP + Pkd1 YES MNNG_4 chr17 24758004 24758004 C T splicing "Tsc2(NM_011647:exon14:c.1361+1G>A,NM_001039363:exon14:c.1361+1G>A)" NA NA splicing "Tsc2(uc008awy.1:exon13:c.1358+1G>A,uc008awz.1:exon14:c.1361+1G>A,uc008axa.1:exon14:c.1361+1G>A,uc008axb.1:exon14:c.1361+1G>A,uc008axc.1:exon14:c.1361+1G>A,uc008axd.1:exon14:c.1361+1G>A,uc008axe.1:exon14:c.1361+1G>A,uc008axg.1:exon14:c.1184+1G>A,uc008axh.1:exon14:c.1358+1G>A)" NA NA splicing "ENSMUSG00000002496(ENSMUST00000097373:exon14:c.1361+1G>A,ENSMUST00000115290:exon14:c.1361+1G>A,ENSMUST00000115291:exon14:c.1361+1G>A,ENSMUST00000115292:exon13:c.1250+1G>A,ENSMUST00000097374:exon14:c.1361+1G>A,ENSMUST00000115294:exon14:c.1361+1G>A,ENSMUST00000088420:exon14:c.1361+1G>A,ENSMUST00000163283:exon14:c.1361+1G>A)" NA NA 17qA3.3 NA NA chr17 24758004 CTAxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 110 0 0 22.333001 0.229167 0.02 -0.420793 37 11 977 283 60 60 0 0 CC 14.435407 48 0 1304 0 KEEP - Tsc2 YES MNNG_4 chr17 25017148 25017148 C T exonic Igfals synonymous SNV NM_008340:c.C267T:p.I89I exonic Igfals synonymous SNV uc008ayn.1:c.C267T:p.I89I exonic ENSMUSG00000046070 synonymous SNV ENSMUST00000050714:c.C267T:p.I89I 17qA3.3 NA NA chr17 25017148 CATxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 162 0 0 111.717757 0.54321 0.02 0.86966 37 44 1022 1150 60 60 0 0 CC 18.347071 61 0 1705 0 KEEP + Igfals YES MNNG_4 chr17 25983469 25983469 C T exonic Wdr90 synonymous SNV NM_001163766:c.G4866A:p.Q1622Q exonic Wdr90 synonymous SNV uc012anm.1:c.G4182A:p.Q1394Q exonic ENSMUSG00000073434 synonymous SNV ENSMUST00000079461:c.G4866A:p.Q1622Q 17qA3.3 NA NA chr17 25983469 TACxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 62 0 0 36.596279 0.636364 0.02 -0.201546 8 14 223 362 70 60 0 0 CC 8.709327 29 0 779 0 KEEP - Wdr90 YES MNNG_4 chr17 26182714 26182714 C T intronic Rab11fip3 NA NA intronic Rab11fip3 NA NA intronic ENSMUSG00000037098 NA NA 17qA3.3 NA NA chr17 26182714 GACxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 103 0 0 74.368419 0.658537 0.02 -0.359166 14 27 353 729 60 60 0 0 CC 12.933294 43 0 1197 0 KEEP - Rab11fip3 YES MNNG_4 chr17 27169715 27169715 C T exonic Ggnbp1 nonsynonymous SNV NM_027544:c.C718T:p.P240S exonic Ggnbp1 nonsynonymous SNV uc008bfh.2:c.C718T:p.P240S exonic ENSMUSG00000048731 nonsynonymous SNV ENSMUST00000053683:c.C718T:p.P240S 17qA3.3 NA NA chr17 27169715 AGAxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 102 0 0 51.344802 0.431373 0.02 1.044184 29 22 767 560 60 60 0 0 CC 11.971501 40 0 1050 0 KEEP + Ggnbp1 YES MNNG_4 chr17 27330755 27330755 C T intronic Lemd2 NA NA intronic Lemd2 NA NA intronic ENSMUSG00000044857 NA NA 17qA3.3 NA NA chr17 27330755 ACCxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 227 0 0 99.376712 0.43956 0.02 0.799741 51 40 1379 1074 60 60 0 0 CC 29.64671 102 1 2759 8 KEEP - Lemd2 YES MNNG_4 chr17 28736540 28736540 C T exonic Srpk1 nonsynonymous SNV NM_016795:c.G1266A:p.M422I exonic "SRPK1,Srpk1" nonsynonymous SNV uc008brh.1:c.G3A:p.M1I exonic ENSMUSG00000004865 nonsynonymous SNV ENSMUST00000130643:c.G1266A:p.M422I 17qA3.3 NA NA chr17 28736540 CACxATG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 158 0 0 124.033108 0.578313 0.02 0.869667 35 48 957 1257 60 60 0 0 CC 20.421484 68 0 1878 0 KEEP - Srpk1 YES MNNG_4 chr17 29276325 29276325 C T exonic Rab44 nonsynonymous SNV NM_001002786:c.C541T:p.P181S exonic Rab44 nonsynonymous SNV uc008bsi.1:c.C541T:p.P181S exonic ENSMUSG00000064147 nonsynonymous SNV ENSMUST00000087942:c.C541T:p.P181S 17qA3.3 NA NA chr17 29276325 GATxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899217 0.899314 0.999892 69 0 0 39.795643 0.404762 0.02 -0.368222 25 17 678 440 60 60 0 0 CC 6.918625 23 0 651 0 KEEP + Rab44 YES MNNG_4 chr17 30893624 30893624 C T intronic Dnah8 NA NA intronic Dnahc8 NA NA intronic ENSMUSG00000033826 NA NA 17qA3.3 NA NA chr17 30893624 GTGxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 259 1 0 63.325103 0.258333 0.02 1.851333 89 31 2399 783 60 60 0 0 CC 32.340958 108 0 2886 0 KEEP + Dnah8 YES MNNG_4 chr17 32213950 32213950 C T ncRNA_exonic Pdxk-ps NA NA ncRNA_exonic Pdxk-ps NA NA ncRNA_exonic ENSMUSG00000002791 NA NA 17qB1 "Score=0.905097;Name=No.8171,chr10:77902295" NA chr17 32213950 AGAxACT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 219 2 0 92.329399 0.454545 0.02 0.623129 48 40 1306 996 60 60 0 0 CC 29.476192 98 0 2751 0 KEEP - Pdxk-ps YES MNNG_4 chr17 33203252 33203252 C T exonic 4921501E09Rik nonsynonymous SNV NM_001009544:c.G1520A:p.S507N exonic 4921501E09Rik nonsynonymous SNV uc008bxz.2:c.G1520A:p.S507N exonic ENSMUSG00000023350 nonsynonymous SNV ENSMUST00000024121:c.G1520A:p.S507N 17qB1 NA NA chr17 33203252 TTGxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 174 0 0 83.5759 0.4375 0.02 0.895986 45 35 1225 907 60 60 0 0 CC 22.858645 76 0 2127 0 KEEP - 4921501E09Rik YES MNNG_4 chr17 33531428 33531428 C T intronic Zfp101 NA NA intronic Zfp101 NA NA intronic ENSMUSG00000055240 NA NA 17qB1 NA NA chr17 33531428 GTAxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 196 0 0 72.466664 0.407895 0.02 0.931069 45 31 1219 800 60 60 0 0 CC 26.159083 87 0 2395 0 KEEP - Zfp101 YES MNNG_4 chr17 34062650 34062650 C T exonic Tapbp synonymous SNV NM_001025313:c.C774T:p.T258T exonic Tapbp synonymous SNV uc008cae.1:c.C774T:p.T258T exonic ENSMUSG00000024308 synonymous SNV ENSMUST00000172489:c.C324T:p.T108T 17qB1 NA NA chr17 34062650 GACxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992025 0.992094 0.999931 94 0 0 70.426992 0.451613 0.02 1.045259 34 28 892 756 60 60 0 0 CC 7.218994 24 0 675 0 KEEP + Tapbp YES MNNG_4 chr17 34136385 34136385 C T exonic H2-K1 synonymous SNV NM_001001892:c.G441A:p.L147L exonic H2-K1 synonymous SNV uc008cap.1:c.G441A:p.L147L exonic ENSMUSG00000061232 synonymous SNV ENSMUST00000025181:c.G441A:p.L147L 17qB1 "Score=0.916841;Name=No.65635,chr17:35399418" NA chr17 34136385 GTTxAGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 374 2 0 148.332289 0.508197 0.02 1.807989 60 62 1644 1555 60 60 0 0 CC 56.244764 187 0 5333 0 KEEP - H2-K1 YES MNNG_4 chr17 34194645 34194645 C T intronic Col11a2 NA NA intronic Col11a2 NA NA intronic ENSMUSG00000024330 NA NA 17qB1 NA NA chr17 34194645 GCAxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 49 0 0 21.306419 0.391304 0.02 -0.201656 14 9 382 237 60 60 0 0 CC 6.918326 23 0 645 0 KEEP + Col11a2 YES MNNG_4 chr17 34349180 34349180 G T exonic Tap2 nonsynonymous SNV NM_011530:c.G1146T:p.M382I exonic Tap2 nonsynonymous SNV uc008cbx.2:c.G1146T:p.M382I exonic "ENSMUSG00000024339,ENSMUSG00000081512" nonsynonymous SNV ENSMUST00000025197:c.G1146T:p.M382I 17qB1 NA NA chr17 34349180 GATxGCC G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 287 0 0 136.5716 0.427481 0.02 2.135279 75 56 2045 1487 60 60 0 0 GG 30.930914 103 0 2888 0 KEEP + Tap2 NO MNNG_4 chr17 34493241 34493241 C T exonic Btnl2 synonymous SNV NM_079835:c.C75T:p.H25H exonic Btnl2 synonymous SNV uc008ccl.1:c.C75T:p.H25H exonic ENSMUSG00000024340 synonymous SNV ENSMUST00000025198:c.C75T:p.H25H 17qB1 NA NA chr17 34493241 GCAxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999998 81 0 0 35.068118 0.384615 0.02 -0.341942 24 15 659 392 60 60 0 0 CC 10.226474 34 0 945 0 KEEP + Btnl2 YES MNNG_4 chr17 34650975 34650975 C T exonic Btnl6 synonymous SNV NM_030747:c.G858A:p.G286G exonic Btnl6 synonymous SNV uc012aqb.1:c.G858A:p.G286G exonic ENSMUSG00000058762 synonymous SNV ENSMUST00000075483:c.G858A:p.G286G 17qB1 "Score=0.897227;Name=No.65646,chr17:34677306" NA chr17 34650975 ATTxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 267 0 0 114.305583 0.455446 0.02 2.309196 55 46 1491 1226 60 60 0 0 CC 36.076613 120 0 3349 0 KEEP - Btnl6 YES MNNG_4 chr17 34855144 34855144 C T exonic Tnxb synonymous SNV NM_031176:c.C8619T:p.L2873L exonic Tnxb synonymous SNV uc012aql.1:c.C3624T:p.L1208L exonic ENSMUSG00000033327 synonymous SNV ENSMUST00000168533:c.C8619T:p.L2873L 17qB1 "Score=0.953125;Name=No.65650,chr17:34932098" NA chr17 34855144 CCTxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 313 0 45 130.393434 0.469565 0.02 1.991989 61 54 1690 1392 60 60 0 0 CC 42.402098 141 0 3987 0 KEEP + Tnxb YES MNNG_4 chr17 34969001 34969001 C T exonic Stk19 nonsynonymous SNV NM_019442:c.G430A:p.D144N exonic Stk19 nonsynonymous SNV uc008cdq.1:c.G430A:p.D144N exonic ENSMUSG00000061207 nonsynonymous SNV ENSMUST00000159333:c.G229A:p.D77N 17qB1 "Score=0.953125;Name=No.65650,chr17:34847295" NA chr17 34969001 GATxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.999859 42 0 0 20.297433 0.5 0.02 -0.14029 8 8 221 213 60 60 0 0 CC 5.414718 18 0 512 0 KEEP - Stk19 YES MNNG_4 chr17 35155372 35155372 C T exonic Vwa7 nonsynonymous SNV NM_138582:c.C556T:p.R186W exonic D17H6S56E-3 nonsynonymous SNV uc008cfa.1:c.C556T:p.R186W exonic ENSMUSG00000007030 nonsynonymous SNV ENSMUST00000007245:c.C556T:p.R186W 17qB1 NA NA chr17 35155372 GAGxGGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 146 0 0 69.49144 0.447761 0.02 0.912967 37 30 939 752 60 60 0 0 CC 16.490627 55 0 1351 0 KEEP + Vwa7 YES MNNG_4 chr17 35175366 35175366 C T exonic Msh5 stopgain SNV NM_013600:c.G996A:p.W332X exonic Msh5 stopgain SNV uc008cfc.2:c.G996A:p.W332X exonic ENSMUSG00000007035 stopgain SNV ENSMUST00000007250:c.G996A:p.W332X 17qB1 NA NA chr17 35175366 CTGxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 218 2 0 88.260601 0.445783 0.02 0.77236 46 37 1264 954 60 60 0 0 CC 27.969952 93 0 2562 0 KEEP - Msh5 YES MNNG_4 chr17 35202519 35202519 C T exonic AU023871 nonsynonymous SNV NM_001033221:c.G392A:p.G131E exonic AU023871 nonsynonymous SNV uc008cfj.1:c.G392A:p.G131E exonic ENSMUSG00000073414 nonsynonymous SNV ENSMUST00000097337:c.G392A:p.G131E 17qB1 NA NA chr17 35202519 GATxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 288 5 0 121.553302 0.453704 0.02 2.247733 59 49 1633 1305 60 60 0 0 CC 36.634911 122 0 3383 0 KEEP - AU023871 YES MNNG_4 chr17 35562779 35562779 C T exonic "H2-Q6,H2-Q8" synonymous SNV NM_023124:c.C598T:p.L200L exonic H2-Q6 synonymous SNV uc008chr.1:c.C403T:p.L135L exonic ENSMUSG00000073409 synonymous SNV ENSMUST00000091611:c.C598T:p.L200L 17qB1 "Score=0.969905;Name=No.65659,chr17:35499753" NA chr17 35562779 ACGxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 376 2 0 36.06928 0.141844 0.02 1.763696 121 20 3336 515 60 60 0 0 CC 56.243889 187 0 5247 0 KEEP NA H2-Q6 YES MNNG_4 chr17 35610396 35610396 C T intronic H2-Q10 NA NA intronic H2-Q10 NA NA intronic ENSMUSG00000067235 NA NA 17qB1 "Score=0.924829;Name=No.65661,chr17:35554794" NA chr17 35610396 TGAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 611 2 0 248.639024 0.497561 0.02 4.1862 103 102 2758 2618 60 60 0 0 CC 99.835877 332 0 9094 0 KEEP + H2-Q10 YES MNNG_4 chr17 35803748 35803748 C T intronic Vars2 NA NA intronic Vars2 NA NA intronic ENSMUSG00000038838 NA NA 17qB1 NA NA chr17 35803748 AGAxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 110 0 0 46.865696 0.454545 0.02 -0.385706 24 20 640 505 60 60 0 0 CC 15.938839 53 0 1437 0 KEEP - Vars2 YES MNNG_4 chr17 36032655 36032655 C T exonic 2310061I04Rik synonymous SNV NM_001033630:c.G435A:p.E145E exonic "2310061I04Rik,RP24-180B11.5" synonymous SNV uc008cix.1:c.G186A:p.E62E exonic ENSMUSG00000050705 synonymous SNV ENSMUST00000146451:c.G186A:p.E62E 17qB1 NA NA chr17 36032655 TTCxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 119 0 0 55.428457 0.383333 0.02 1.062646 37 23 1002 618 60 60 0 0 CC 12.023062 40 0 1118 0 KEEP - 2310061I04Rik YES MNNG_4 chr17 36048348 36048348 C T intronic Mrps18b NA NA ncRNA_exonic AK034502 NA NA ncRNA_exonic ENSMUSG00000084998 NA NA 17qB1 NA NA chr17 36048348 GCCxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 114 1 0 43.532703 0.4 0.02 -0.394534 27 18 733 481 60 60 0 0 CC 15.641962 52 0 1465 0 KEEP - Mrps18b YES MNNG_4 chr17 36065155 36065155 C T exonic Ppp1r10 nonsynonymous SNV NM_001163818:c.C983T:p.T328I exonic Ppp1r10 nonsynonymous SNV uc008cjj.2:c.C983T:p.T328I exonic ENSMUSG00000039220 nonsynonymous SNV ENSMUST00000087210:c.C983T:p.T328I 17qB1 NA NA chr17 36065155 GCAxCGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 191 0 0 63.164579 0.41791 0.02 0.912798 39 28 1033 696 60 60 0 0 CC 28.25477 94 0 2532 0 KEEP + Ppp1r10 YES MNNG_4 chr17 36324195 36324195 C T splicing H2-T3(NM_008208:exon5:c.901+1G>A) NA NA splicing "H2-T3(uc008ckm.1:exon5:c.901+1G>A,uc012asr.1:exon5:c.769+1G>A)" NA NA splicing "ENSMUSG00000054128(ENSMUST00000025312:exon5:c.769+1G>A,ENSMUST00000102675:exon5:c.901+1G>A,ENSMUST00000173133:exon5:c.901+1G>A,ENSMUST00000172663:exon5:c.968+1G>A,ENSMUST00000173629:exon5:c.951+1G>A)" NA NA 17qB1 "Score=0.91196;Name=No.65675,chr17:36341244" NA chr17 36324195 TTAxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 842 4 1 76.533409 0.224852 0.02 5.203261 131 38 3500 975 60 60 0 0 CC 154.674935 519 1 14132 12 KEEP - H2-T3 YES MNNG_4 chr17 37046169 37046169 C T exonic Trim31 nonsynonymous SNV NM_146077:c.C1031T:p.P344L exonic Trim31 nonsynonymous SNV uc008cll.1:c.C1031T:p.P344L exonic ENSMUSG00000058063 nonsynonymous SNV ENSMUST00000078438:c.C1031T:p.P344L 17qB1 NA NA chr17 37046169 ACCxAGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 227 0 0 101.343606 0.465909 0.02 0.923653 47 41 1303 1082 60 60 0 0 CC 31.886807 106 0 3022 0 KEEP + Trim31 YES MNNG_4 chr17 37532097 37532097 C T intergenic "Olfr103(dist=57922),Olfr107(dist=10325)" NA NA exonic Olfr106 nonsynonymous SNV uc008cmv.1:c.C587T:p.T196I ncRNA_exonic ENSMUSG00000059346 NA NA 17qB1 NA NA chr17 37532097 ACAxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 113 0 0 74.839196 0.5 0.02 1.071313 30 30 813 786 60 60 0 0 CC 12.333325 41 0 1164 0 KEEP NA Olfr103 YES MNNG_4 chr17 43583916 43583916 C T exonic Gpr116 nonsynonymous SNV NM_001081178:c.C2291T:p.S764L exonic Gpr116 nonsynonymous SNV uc008cpb.1:c.C1637T:p.S546L exonic ENSMUSG00000056492 nonsynonymous SNV ENSMUST00000113599:c.C2291T:p.S764L 17qB3 NA NA chr17 43583916 GCTxATC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043692 0.043787 0.997832 25 0 0 15.469062 0.857143 0.02 -0.061043 1 6 27 139 60 60 0 0 CC 4.813233 16 0 458 0 KEEP + Gpr116 YES MNNG_4 chr17 47028598 47028598 C T exonic Tbcc synonymous SNV NM_178385:c.C960T:p.A320A exonic Tbcc synonymous SNV uc008cum.1:c.C960T:p.A320A exonic ENSMUSG00000036430 synonymous SNV ENSMUST00000040434:c.C960T:p.A320A 17qC NA NA chr17 47028598 GGCxCGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.999859 48 0 0 35.65405 0.518519 0.02 -0.236731 13 14 357 371 60 60 0 0 CC 5.414293 18 0 503 0 KEEP + Tbcc YES MNNG_4 chr17 47526141 47526141 C T exonic Guca1b nonsynonymous SNV NM_146079:c.C290T:p.T97I exonic Guca1b nonsynonymous SNV uc008cvb.1:c.C290T:p.T97I exonic ENSMUSG00000023979 nonsynonymous SNV ENSMUST00000024774:c.C290T:p.T97I 17qC NA NA chr17 47526141 GGAxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.973965 0.973965 1 117 0 0 48.042006 0.388889 0.02 1.026605 33 21 882 537 60 60 0 0 CC 15.593381 52 0 1406 0 KEEP + Guca1b YES MNNG_4 chr17 47735646 47735646 C T exonic Ccnd3 nonsynonymous SNV NM_007632:c.C800T:p.P267L exonic Ccnd3 nonsynonymous SNV uc008cvp.1:c.C800T:p.P267L exonic ENSMUSG00000034165 nonsynonymous SNV ENSMUST00000037333:c.C800T:p.P267L 17qC "Score=0.959971;Name=No.67097,chr4:138900305" NA chr17 47735646 TGCxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 62 0 0 33.173639 0.5 0.02 -0.227916 13 13 348 348 60 60 0 0 CC 8.412742 28 0 765 0 KEEP + Ccnd3 YES MNNG_4 chr17 47750059 47750059 C T exonic Med20 synonymous SNV NM_020048:c.C162T:p.G54G exonic Med20 synonymous SNV uc008cvr.1:c.C162T:p.G54G exonic "ENSMUSG00000023984,ENSMUSG00000092558" synonymous SNV ENSMUST00000024778:c.C162T:p.G54G 17qC NA NA chr17 47750059 GGGxAGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227502 0.229173 0.992708 32 0 0 19.309766 0.533333 0.02 -0.131496 7 8 195 200 60 60 0 0 CC 3.00829 10 0 287 0 KEEP + Med20 YES MNNG_4 chr17 48599978 48599978 C T exonic Unc5cl nonsynonymous SNV NM_152823:c.C554T:p.A185V exonic Unc5cl nonsynonymous SNV uc008cxz.2:c.C554T:p.A185V exonic ENSMUSG00000043592 nonsynonymous SNV ENSMUST00000074574:c.C554T:p.A185V 17qC NA NA chr17 48599978 GCGxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 350 4 0 129.930006 0.416667 0.02 1.941316 77 55 2079 1426 60 60 0 0 CC 48.105174 160 0 4413 0 KEEP + Unc5cl YES MNNG_4 chr17 49236317 49236317 C T exonic Lrfn2 synonymous SNV NM_027452:c.C2142T:p.P714P exonic Lrfn2 synonymous SNV uc008cyd.2:c.C2142T:p.P714P exonic ENSMUSG00000040490 synonymous SNV ENSMUST00000163859:c.C81T:p.P27P 17qC NA NA chr17 49236317 GCCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999999 67 0 0 38.066591 0.666667 0.02 -0.227935 7 14 195 372 60 70 0 0 CC 10.52771 35 0 977 0 KEEP + Lrfn2 YES MNNG_4 chr17 56743750 56743750 C T intronic Safb NA NA intronic Safb NA NA intronic ENSMUSG00000071054 NA NA 17qD NA NA chr17 56743750 AAAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 235 0 0 155.128123 0.516393 0.02 1.930493 59 63 1590 1618 60 60 0 0 CC 26.702008 89 0 2373 0 KEEP + Safb YES MNNG_4 chr17 6510922 6510922 C T intergenic "Tmem181b-ps(dist=60780),Dynlt1f(dist=89874)" NA NA UTR3 Tulp4 NA NA intronic ENSMUSG00000079735 NA NA 17qA1 "Score=0.991775;Name=No.65279,chr17:6325771" NA chr17 6510922 CTCxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 406 0 33 26.412101 0.09434 0.02 3.389105 144 15 3955 408 60 46 0 0 CC 49.792123 169 1 4780 9 KEEP NA Tmem181b-ps YES MNNG_4 chr17 6940841 6940841 C T exonic Sytl3 synonymous SNV NM_183368:c.C975T:p.H325H exonic Sytl3 synonymous SNV uc008ahu.2:c.C975T:p.H325H exonic ENSMUSG00000041831 synonymous SNV ENSMUST00000080509:c.C948T:p.H316H 17qA1 NA NA chr17 6940841 ACAxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 206 0 0 95.450225 0.542857 0.02 1.081556 32 38 862 983 60 60 0 0 CC 28.563411 95 0 2651 0 KEEP + Sytl3 YES MNNG_4 chr17 6942058 6942058 C T intronic Sytl3 NA NA intronic Sytl3 NA NA intronic ENSMUSG00000041831 NA NA 17qA1 NA NA chr17 6942058 CCAxCTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 213 0 0 108.88112 0.542169 0.02 0.764113 38 45 985 1123 60 60 0 0 CC 30.314311 101 0 2739 0 KEEP + Sytl3 YES MNNG_4 chr17 71580553 71580553 C T exonic Lpin2 nonsynonymous SNV NM_001164885:c.C967T:p.P323S exonic Lpin2 nonsynonymous SNV uc008dmb.1:c.C853T:p.P285S exonic ENSMUSG00000024052 nonsynonymous SNV ENSMUST00000112647:c.C853T:p.P285S 17qE1.3 NA NA chr17 71580553 CATxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 166 0 0 112.315116 0.5375 0.02 0.895882 37 43 1025 1158 60 60 0 0 CC 21.355972 71 0 2002 0 KEEP + Lpin2 YES MNNG_4 chr17 7556177 7556177 C T exonic Ttll2 synonymous SNV NM_001098267:c.G699A:p.G233G exonic Ttll2 synonymous SNV uc008ain.1:c.G699A:p.G233G exonic ENSMUSG00000079722 synonymous SNV ENSMUST00000115747:c.G699A:p.G233G 17qA1 "Score=0.986037;Name=No.65302,chr17:13229126" NA chr17 7556177 TAAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 148 0 62 38.292499 0.516129 0.02 -0.27167 15 16 398 400 36 29 0 0 CC 21.354927 71 0 1960 0 KEEP - Ttll2 YES MNNG_4 chr17 8535115 8535115 C T UTR3 Prr18 NA NA UTR3 Prr18 NA NA UTR3 ENSMUSG00000055945 NA NA 17qA1 NA NA chr17 8535115 AACxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 298 0 0 101.312661 0.338583 0.02 2.081227 84 43 2301 1161 60 60 0 0 CC 40.290271 134 0 3720 0 KEEP + Prr18 YES MNNG_4 chr17 8536633 8536633 C T UTR3 Prr18 NA NA UTR3 Prr18 NA NA UTR3 ENSMUSG00000055945 NA NA 17qA1 NA NA chr17 8536633 TTCxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 339 0 0 142.828539 0.44186 0.02 2.063576 72 57 1985 1541 60 60 1 0 CC 50.212262 167 0 4614 0 KEEP + Prr18 YES MNNG_4 chr18 11054145 11054145 G A exonic Gata6 synonymous SNV NM_010258:c.G75A:p.G25G exonic Gata6 synonymous SNV uc008ebj.1:c.G75A:p.G25G exonic ENSMUSG00000005836 synonymous SNV ENSMUST00000047762:c.G75A:p.G25G 18qA1 NA NA chr18 11054145 CGGxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 46 2 0 11.543032 0.26087 0.02 -0.200892 17 6 442 144 60 60 0 0 GG 4.8123 16 0 440 0 KEEP + Gata6 YES MNNG_4 chr18 21288323 21288323 G A exonic Garem nonsynonymous SNV NM_001033445:c.C1934T:p.P645L exonic Fam59a nonsynonymous SNV uc008efg.1:c.C1934T:p.P645L exonic ENSMUSG00000042680 nonsynonymous SNV ENSMUST00000049260:c.C1934T:p.P645L 18qA2 NA NA chr18 21288323 CTCxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 321 4 0 39.778763 0.130435 0.02 3.372364 140 21 3576 568 60 60 0 0 GG 37.876709 126 0 3306 0 KEEP - Garem YES MNNG_4 chr18 32252762 32252762 C T intronic Iws1 NA NA intronic Iws1 NA NA intronic ENSMUSG00000024384 NA NA 18qB1 NA NA chr18 32252762 TTTxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 76 0 0 22.580286 0.30303 0.02 -0.289356 23 10 636 266 60 60 0 0 CC 10.227998 34 0 970 0 KEEP + Iws1 YES MNNG_4 chr18 33992275 33992275 C T exonic Epb4.1l4a synonymous SNV NM_013512:c.G1152A:p.K384K exonic "Epb4.1l4a,Epb41l4a" synonymous SNV uc008ejx.1:c.G735A:p.K245K exonic ENSMUSG00000024376 synonymous SNV ENSMUST00000025234:c.G1152A:p.K384K 18qB1 NA NA chr18 33992275 GATxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 193 0 0 50.628397 0.338462 0.02 1.018696 43 22 1184 582 60 70 0 0 CC 29.167751 97 0 2754 0 KEEP - Epb4.1l4a YES MNNG_4 chr18 34458113 34458113 A G exonic Apc nonsynonymous SNV NM_007462:c.A964G:p.T322A exonic Apc nonsynonymous SNV uc008ekd.1:c.A964G:p.T322A exonic ENSMUSG00000005871 nonsynonymous SNV ENSMUST00000171187:c.A910G:p.T304A 18qB1 NA NA chr18 34458113 GGTxCTC A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522098 0.522161 0.999879 53 1 0 22.300212 0.375 0.02 -0.21037 15 9 369 249 60 60 0 0 AA 6.613435 22 0 578 0 KEEP + Apc NO MNNG_4 chr18 34477984 34477984 C T exonic Apc nonsynonymous SNV NM_007462:c.C8278T:p.P2760S exonic Apc nonsynonymous SNV uc008eke.2:c.C8278T:p.P2760S exonic ENSMUSG00000005871 nonsynonymous SNV ENSMUST00000079362:c.C8278T:p.P2760S 18qB1 "Score=0.932203;Name=No.70778,chr5:76625697" NA chr18 34477984 ACCxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 74 0 0 23.844759 0.357143 0.02 -0.245516 18 10 496 270 60 60 0 0 CC 12.332266 41 0 1141 0 KEEP + Apc YES MNNG_4 chr18 34927983 34927983 C T exonic Fam53c nonsynonymous SNV NM_175104:c.C298T:p.P100S exonic Fam53c nonsynonymous SNV uc008ell.1:c.C187T:p.P63S exonic ENSMUSG00000034300 nonsynonymous SNV ENSMUST00000049281:c.C298T:p.P100S 18qB1 NA NA chr18 34927983 GAAxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.420544 0.423478 0.993072 37 0 0 14.01586 0.333333 0.02 -0.183701 14 7 381 165 60 60 0 0 CC 3.308422 11 0 303 0 KEEP + Fam53c YES MNNG_4 chr18 36827234 36827234 C T exonic Sra1 synonymous SNV NM_025291:c.G573A:p.Q191Q exonic Sra1 synonymous SNV uc012bbp.1:c.G315A:p.Q105Q exonic ENSMUSG00000006050 synonymous SNV ENSMUST00000169080:c.G537A:p.Q179Q 18qB2 NA NA chr18 36827234 CCAxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 63 1 0 37.062199 0.7 0.02 -0.175315 6 14 162 357 60 60 0 0 CC 11.428216 38 0 1034 0 KEEP - Sra1 YES MNNG_4 chr18 36898607 36898607 C T exonic Tmco6 synonymous SNV NM_028036:c.C807T:p.S269S exonic Tmco6 synonymous SNV uc008eoh.1:c.C579T:p.S193S exonic ENSMUSG00000006850 synonymous SNV ENSMUST00000007046:c.C807T:p.S269S 18qB2 NA NA chr18 36898607 CAGxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 62 0 0 10.38158 0.238095 0.02 -0.184121 16 5 433 130 60 60 0 0 CC 11.128721 37 0 1023 0 KEEP + Tmco6 YES MNNG_4 chr18 36908227 36908227 C T exonic Ik stopgain SNV NM_011879:c.C259T:p.Q87X exonic Ik stopgain SNV uc008eok.2:c.C259T:p.Q87X exonic ENSMUSG00000024474 stopgain SNV ENSMUST00000007042:c.C259T:p.Q87X 18qB2 NA NA chr18 36908227 CAGxAAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 66 2 0 19.528754 0.333333 0.02 -0.236719 18 9 495 227 60 60 0 0 CC 9.910342 33 0 901 0 KEEP + Ik YES MNNG_4 chr18 36955641 36955641 G A intronic Zmat2 NA NA intronic Zmat2 NA NA intronic ENSMUSG00000001383 NA NA 18qB2 NA NA chr18 36955641 TAAxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 53 0 0 14.778105 0.368421 0.02 -0.166056 12 7 337 169 60 60 0 0 GG 8.723393 29 0 829 0 KEEP + Zmat2 YES MNNG_4 chr18 37167220 37167220 T A exonic Pcdha10 synonymous SNV NM_009961:c.T2247A:p.S749S exonic Pcdha10 synonymous SNV uc008epf.2:c.T2247A:p.S749S exonic ENSMUSG00000007440 synonymous SNV ENSMUST00000115658:c.T2247A:p.S749S 18qB3 NA NA chr18 37167220 GTCxTAC T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 38 0 0 9.867099 0.277778 0.02 -0.157788 13 5 350 121 60 60 0 0 TT 5.714914 19 0 528 0 KEEP + Pcdha10 NO MNNG_4 chr18 37639830 37639830 C T exonic Pcdhb16 nonsynonymous SNV NM_053141:c.C2188T:p.P730S exonic Pcdhb16 nonsynonymous SNV uc008eqb.1:c.C2188T:p.P730S exonic ENSMUSG00000047910 nonsynonymous SNV ENSMUST00000051442:c.C2188T:p.P730S 18qB3 NA NA chr18 37639830 GTGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 325 2 0 92.618061 0.366071 0.02 2.019319 71 41 1916 1050 60 60 0 0 CC 51.729325 172 0 4767 0 KEEP + Pcdhb16 YES MNNG_4 chr18 37981351 37981351 C T exonic Pcdhgc5 nonsynonymous SNV NM_033583:c.C2023T:p.P675S exonic Pcdhgc5 nonsynonymous SNV uc008erg.1:c.C2023T:p.P675S exonic ENSMUSG00000023036 nonsynonymous SNV ENSMUST00000055935:c.C2023T:p.P675S 18qB3 NA NA chr18 37981351 ATGxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 126 0 0 46.719601 0.375 0.02 1.009316 35 21 920 528 60 60 0 0 CC 17.445059 58 0 1604 0 KEEP + Pcdhgc5 YES MNNG_4 chr18 56696895 56696895 C T exonic Aldh7a1 nonsynonymous SNV NM_138600:c.G971A:p.G324E exonic Aldh7a1 nonsynonymous SNV uc008eyn.2:c.G971A:p.G324E exonic ENSMUSG00000053644 nonsynonymous SNV ENSMUST00000066208:c.G971A:p.G324E 18qD3 NA NA chr18 56696895 GTTxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 74 0 0 23.740586 0.37037 0.02 -0.236738 17 10 470 267 60 60 0 0 CC 10.206177 34 0 930 0 KEEP - Aldh7a1 YES MNNG_4 chr18 60867542 60867542 C T exonic Ndst1 nonsynonymous SNV NM_008306:c.G721A:p.A241T exonic Ndst1 nonsynonymous SNV uc008fat.1:c.G721A:p.A241T exonic ENSMUSG00000054008 nonsynonymous SNV ENSMUST00000115312:c.G721A:p.A241T 18qE1 NA NA chr18 60867542 TGGxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 172 4 0 44.105912 0.298507 0.02 0.903818 47 20 1284 523 60 60 0 0 CC 25.264475 84 0 2332 0 KEEP - Ndst1 YES MNNG_4 chr18 67552648 67552648 C T exonic Tubb6 nonsynonymous SNV NM_026473:c.C215T:p.T72I exonic Tubb6 nonsynonymous SNV uc008fmd.1:c.C215T:p.T72I exonic ENSMUSG00000001473 nonsynonymous SNV ENSMUST00000001513:c.C215T:p.T72I 18qE1 NA NA chr18 67552648 GCAxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 288 0 0 62.02093 0.321839 0.02 0.737271 59 28 1589 724 60 60 0 0 CC 44.435156 148 0 4068 0 KEEP + Tubb6 YES MNNG_4 chr18 70155793 70155793 C T exonic Rab27b nonsynonymous SNV NM_030554:c.G83A:p.R28K exonic Rab27b nonsynonymous SNV uc008fnz.1:c.G83A:p.R28K exonic ENSMUSG00000024511 nonsynonymous SNV ENSMUST00000069749:c.G83A:p.R28K 18qE2 NA NA chr18 70155793 TATxTAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 33 0 0 28.513955 0.833333 0.02 -0.105197 2 10 57 261 60 60 0 0 CC 4.512704 15 0 435 0 KEEP - Rab27b YES MNNG_4 chr18 74362210 74362210 C T intronic Ska1 NA NA intronic "2810433K01Rik,Ska1" NA NA intronic ENSMUSG00000036223 NA NA 18qE2 NA NA chr18 74362210 GCCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 61 0 0 40.656679 0.681818 0.02 -0.192749 7 15 189 395 60 60 0 0 CC 9.02319 30 0 829 0 KEEP - Ska1 YES MNNG_4 chr18 74965578 74965578 C T exonic Acaa2 synonymous SNV NM_177470:c.C1179T:p.I393I exonic Acaa2 synonymous SNV uc008fpt.1:c.C1179T:p.I393I exonic ENSMUSG00000036880 synonymous SNV ENSMUST00000041053:c.C1179T:p.I393I 18qE2 NA NA chr18 74965578 CATxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053762 0.054137 0.993072 24 0 0 17.105612 0.75 0.02 -0.070146 2 6 56 162 60 60 0 0 CC 3.253824 11 0 275 0 KEEP + Acaa2 YES MNNG_4 chr18 76297117 76297117 C T exonic Zbtb7c synonymous SNV NM_145356:c.C621T:p.F207F exonic Zbtb7c synonymous SNV uc008fqk.1:c.C621T:p.F207F exonic ENSMUSG00000044646 synonymous SNV ENSMUST00000167921:c.C621T:p.F207F 18qE3 NA NA chr18 76297117 CTTxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 59 0 0 12.245053 0.206897 0.02 -0.254284 23 6 636 158 60 60 0 0 CC 9.32505 31 0 877 0 KEEP + Zbtb7c YES MNNG_4 chr18 78014582 78014582 C T exonic Atp5a1 nonsynonymous SNV NM_007505:c.C127T:p.L43F exonic Atp5a1 nonsynonymous SNV uc008fru.1:c.C127T:p.L43F exonic ENSMUSG00000025428 nonsynonymous SNV ENSMUST00000026495:c.C127T:p.L43F 18qE3 NA NA chr18 78014582 CGAxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423448 0.423478 0.999931 52 0 0 19.16919 0.4 0.02 -0.184136 12 8 335 212 60 60 0 0 CC 7.519996 25 0 710 0 KEEP + Atp5a1 YES MNNG_4 chr18 78016253 78016253 C T intronic Atp5a1 NA NA intronic Atp5a1 NA NA intronic ENSMUSG00000025428 NA NA 18qE3 NA NA chr18 78016253 CCTxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139815 0.139832 0.999879 40 0 0 25.458109 0.75 0.02 -0.105216 3 9 84 241 60 60 0 0 CC 6.618356 22 0 633 0 KEEP + Atp5a1 YES MNNG_4 chr18 78382585 78382585 C T exonic Slc14a2 nonsynonymous SNV NM_001110274:c.G497A:p.G166D exonic Slc14a2 nonsynonymous SNV uc012bfh.1:c.G497A:p.G166D exonic ENSMUSG00000024552 nonsynonymous SNV ENSMUST00000163367:c.G497A:p.G166D 18qE3 NA NA chr18 78382585 CAGxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999859 30 0 0 9.521694 0.444444 0.02 -0.078908 5 4 138 103 60 60 0 0 CC 5.414174 18 0 501 0 KEEP - Slc14a2 YES MNNG_4 chr18 83156905 83156905 C T exonic Zfp516 synonymous SNV NM_001177464:c.C2541T:p.L847L exonic Zfp516 synonymous SNV uc008fuf.2:c.C2541T:p.L847L exonic ENSMUSG00000058881 synonymous SNV ENSMUST00000071233:c.C2541T:p.L847L 18qE3 NA NA chr18 83156905 CCTxGGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 161 0 0 104.785841 0.661017 0.02 0.982835 20 39 516 1026 60 60 0 0 CC 24.351648 81 0 2168 0 KEEP + Zfp516 YES MNNG_4 chr18 84731177 84731177 C T exonic Zfp407 nonsynonymous SNV NM_001033341:c.G1202A:p.S401N exonic Zfp407 nonsynonymous SNV uc008fuo.2:c.G1202A:p.S401N exonic ENSMUSG00000048410 nonsynonymous SNV ENSMUST00000125763:c.G1202A:p.S401N 18qE4 NA NA chr18 84731177 GTAxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 91 0 0 69.21512 0.613636 0.02 -0.385727 17 27 466 691 60 60 0 0 CC 12.929907 43 0 1170 0 KEEP - Zfp407 YES MNNG_4 chr19 15992685 15992685 C T intronic Psat1 NA NA intronic Psat1 NA NA intronic ENSMUSG00000024640 NA NA 19qA NA NA chr19 15992685 TTCxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290363 0.292001 0.994391 30 0 0 34.51287 0.75 0.02 -0.14029 4 12 107 327 60 60 0 0 CC 3.910234 13 0 363 0 KEEP - Psat1 YES MNNG_4 chr19 16756396 16756396 G A exonic Vps13a synonymous SNV NM_173028:c.C5256T:p.L1752L exonic Vps13a synonymous SNV uc008gwv.1:c.C5256T:p.L1752L exonic ENSMUSG00000046230 synonymous SNV ENSMUST00000068156:c.C5256T:p.L1752L 19qB NA NA chr19 16756396 AGAxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 119 1 0 64.172985 0.448276 0.02 1.177924 32 26 880 691 60 60 0 0 GG 15.642983 52 0 1487 0 KEEP - Vps13a YES MNNG_4 chr19 17193041 17193041 G A exonic Prune2 nonsynonymous SNV NM_181348:c.G1418A:p.G473E exonic Prune2 nonsynonymous SNV uc008gxg.2:c.G1418A:p.G473E exonic ENSMUSG00000039126 nonsynonymous SNV ENSMUST00000087689:c.G1418A:p.G473E 19qB NA NA chr19 17193041 AAGxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 98 0 0 32.026917 0.318182 0.02 -0.394566 30 14 824 373 60 60 0 0 GG 14.723043 49 0 1350 0 KEEP + Prune2 YES MNNG_4 chr19 21546950 21546950 G A exonic Gda nonsynonymous SNV NM_010266:c.C31T:p.L11F exonic Gda nonsynonymous SNV uc008gyx.1:c.C31T:p.L11F exonic ENSMUSG00000058624 nonsynonymous SNV ENSMUST00000087600:c.C31T:p.L11F 19qB NA NA chr19 21546950 CGAxCGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119541 0.120436 0.99257 20 0 0 11.891668 0.454545 0.02 -0.096434 6 5 163 128 60 60 0 0 GG 2.406173 8 0 222 0 KEEP - Gda YES MNNG_4 chr19 25228646 25228646 G A exonic Dock8 synonymous SNV NM_028785:c.G3249A:p.K1083K exonic Dock8 synonymous SNV uc008hba.1:c.G3249A:p.K1083K exonic ENSMUSG00000052085 synonymous SNV ENSMUST00000025831:c.G3249A:p.K1083K 19qB NA NA chr19 25228646 CAAxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 123 0 0 77.506837 0.576923 0.02 1.141463 22 30 618 786 60 60 0 0 GG 15.943563 53 0 1512 0 KEEP + Dock8 YES MNNG_4 chr19 27900592 27900592 G A exonic Rfx3 nonsynonymous SNV NM_011265:c.C782T:p.P261L exonic Rfx3 nonsynonymous SNV uc008hce.2:c.C707T:p.P236L exonic ENSMUSG00000040929 nonsynonymous SNV ENSMUST00000099533:c.C308T:p.P103L 19qC1 NA NA chr19 27900592 AGAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835607 0.835716 0.999869 63 0 0 59.539733 0.594595 0.02 -0.324427 15 22 410 599 60 60 0 0 GG 6.307501 21 0 575 0 KEEP - Rfx3 YES MNNG_4 chr19 29607734 29607734 G A exonic C030046E11Rik nonsynonymous SNV NM_001081319:c.G224A:p.R75K exonic "C030046E11Rik,Kiaa1432" nonsynonymous SNV uc008hdq.1:c.G224A:p.R75K exonic ENSMUSG00000038658 nonsynonymous SNV ENSMUST00000043610:c.G224A:p.R75K 19qC1 NA NA chr19 29607734 GGAxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58289 0.58293 0.999931 58 0 0 28.826163 0.461538 0.02 -0.227952 14 12 388 309 60 60 0 0 GG 7.517475 25 0 699 0 KEEP + C030046E11Rik YES MNNG_4 chr19 30167238 30167238 G A exonic Uhrf2 nonsynonymous SNV NM_144873:c.G2296A:p.V766I exonic Uhrf2 nonsynonymous SNV uc008hei.1:c.G2296A:p.V766I exonic ENSMUSG00000024817 nonsynonymous SNV ENSMUST00000025739:c.G2296A:p.V766I 19qC1 NA NA chr19 30167238 CAGxTTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 39 0 0 27.603641 0.647059 0.02 -0.148606 6 11 157 272 60 60 0 0 GG 5.410253 18 0 485 0 KEEP + Uhrf2 YES MNNG_4 chr19 39923786 39923786 G A intronic Cyp2c69 NA NA intronic Cyp2c69 NA NA intronic ENSMUSG00000092008 NA NA 19qC3 "Score=0.934253;Name=No.72686,chr19:39681598" NA chr19 39923786 TAAxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 100 0 29 24.325348 0.305556 0.02 -0.315642 25 11 686 287 60 60 0 0 GG 13.537289 45 0 1288 0 KEEP - Cyp2c69 YES MNNG_4 chr19 40326563 40326563 G A intronic Pdlim1 NA NA intronic Pdlim1 NA NA intronic ENSMUSG00000055044 NA NA 19qC3 NA NA chr19 40326563 AGAxGGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 37 0 0 19.201826 0.470588 0.02 -0.148975 9 8 250 205 60 60 0 0 GG 4.210972 14 0 389 0 KEEP - Pdlim1 YES MNNG_4 chr19 40989082 40989082 G A exonic Zfp518a synonymous SNV NM_028319:c.G2964A:p.V988V exonic Zfp518a synonymous SNV uc008hlk.1:c.G2964A:p.V988V exonic ENSMUSG00000049164 synonymous SNV ENSMUST00000050092:c.G2964A:p.V988V 19qC3 NA NA chr19 40989082 GGTxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 154 0 0 76.326178 0.438356 0.02 0.860106 41 32 1113 828 60 60 0 0 GG 19.253064 64 0 1836 0 KEEP + Zfp518a YES MNNG_4 chr19 41191683 41191683 G A intronic Tll2 NA NA intronic Tll2 NA NA intronic ENSMUSG00000025013 NA NA 19qC3 NA NA chr19 41191683 GCAxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 52 0 0 56.270487 1 0.02 -0.15781 0 18 0 477 0 60 0 0 GG 8.421586 28 0 786 0 KEEP - Tll2 YES MNNG_4 chr19 42234484 42234484 G A intergenic "Marveld1(dist=8291),Zfyve27(dist=10573)" NA NA intergenic "Marveld1(dist=8291),Zfyve27(dist=10573)" NA NA intergenic "ENSMUSG00000044345(dist=8299),ENSMUSG00000018820(dist=10573)" NA NA 19qC3 NA NA chr19 42234484 GTGxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 183 0 5 51.409067 0.411765 0.02 1.150163 30 21 828 564 60 60 0 0 GG 33.383793 111 0 3075 0 KEEP NA Marveld1 YES MNNG_4 chr19 42276415 42276415 G A exonic Sfrp5 synonymous SNV NM_018780:c.C87T:p.Y29Y exonic Sfrp5 synonymous SNV uc008hnl.2:c.C87T:p.Y29Y exonic ENSMUSG00000018822 synonymous SNV ENSMUST00000018966:c.C87T:p.Y29Y 19qC3 NA NA chr19 42276415 GTCxTAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 84 0 0 46.373243 0.542857 0.02 -0.306791 16 19 417 478 60 60 0 0 GG 11.979201 40 0 1031 0 KEEP - Sfrp5 YES MNNG_4 chr19 42801486 42801486 C A intronic Pyroxd2 NA NA intronic Pyroxd2 NA NA intronic ENSMUSG00000060224 NA NA 19qC3 NA NA chr19 42801486 GAAxCAA C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 104 0 0 44.186972 0.404255 0.02 -0.42083 28 19 766 489 60 60 0 0 CC 13.805775 46 0 1244 0 KEEP - Pyroxd2 NO MNNG_4 chr19 44137487 44137487 G A intronic Erlin1 NA NA intronic Erlin1 NA NA intronic ENSMUSG00000025198 NA NA 19qC3 NA NA chr19 44137487 ATGxGCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 98 2 0 34.507965 0.424242 0.02 -0.289328 19 14 515 376 60 60 0 0 GG 13.83688 46 0 1291 0 KEEP - Erlin1 YES MNNG_4 chr19 44170725 44170725 G A exonic Chuk nonsynonymous SNV NM_001162410:c.C922T:p.L308F exonic Chuk nonsynonymous SNV uc008hpg.2:c.C922T:p.L308F exonic ENSMUSG00000025199 nonsynonymous SNV ENSMUST00000026217:c.C922T:p.L308F 19qC3 NA NA chr19 44170725 TGAxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 58 0 0 31.337263 0.545455 0.02 -0.192905 10 12 280 322 60 60 0 0 GG 7.521075 25 0 723 0 KEEP - Chuk YES MNNG_4 chr19 44419189 44419189 G A splicing Scd4(NM_183216:exon6:c.863-1G>A) NA NA splicing Scd4(uc008hpq.1:exon6:c.863-1G>A) NA NA splicing ENSMUSG00000050195(ENSMUST00000058856:exon6:c.863-1G>A) NA NA 19qC3 NA NA chr19 44419189 GCAxGCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 236 2 0 113.380461 0.446602 0.02 2.380692 57 46 1592 1222 70 70 0 0 GG 31.283206 104 0 2942 0 KEEP + Scd4 YES MNNG_4 chr19 46079002 46079002 G A exonic Hps6 nonsynonymous SNV NM_176785:c.G887A:p.G296D exonic Hps6 nonsynonymous SNV uc008hrx.2:c.G887A:p.G296D exonic ENSMUSG00000074811 nonsynonymous SNV ENSMUST00000099393:c.G887A:p.G296D 19qC3 NA NA chr19 46079002 ATGxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 62 0 0 31.183439 0.433333 0.02 -0.271788 17 13 462 339 60 60 0 0 GG 7.519387 25 0 691 0 KEEP + Hps6 YES MNNG_4 chr19 46388679 46388679 G A exonic Psd nonsynonymous SNV NM_028627:c.C2542T:p.L848F exonic Psd nonsynonymous SNV uc008htb.1:c.C649T:p.L217F exonic ENSMUSG00000037126 nonsynonymous SNV ENSMUST00000096029:c.C649T:p.L217F 19qC3 NA NA chr19 46388679 AGAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 58 0 0 21.706829 0.391304 0.02 -0.201654 14 9 381 241 60 60 0 0 GG 9.006341 30 0 809 0 KEEP - Psd YES MNNG_4 chr19 47124979 47124979 G A exonic Pcgf6 synonymous SNV NM_027654:c.C331T:p.L111L exonic Pcgf6 synonymous SNV uc008hul.1:c.C331T:p.L111L exonic ENSMUSG00000025050 synonymous SNV ENSMUST00000026032:c.C331T:p.L111L 19qC3 NA NA chr19 47124979 CCAxACG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 133 0 0 114.682005 0.688525 0.02 1.053762 19 42 526 1111 60 60 0 0 GG 13.838213 46 0 1319 0 KEEP - Pcgf6 YES MNNG_4 chr19 47216005 47216005 G A exonic Calhm1 synonymous SNV NM_001081271:c.C567T:p.S189S exonic Calhm1 synonymous SNV uc008hus.1:c.C567T:p.S189S exonic ENSMUSG00000079258 synonymous SNV ENSMUST00000111813:c.C567T:p.S189S 19qC3 NA NA chr19 47216005 GAAxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 80 1 0 35.352718 0.4375 0.02 -0.280588 18 14 493 382 60 60 0 0 GG 12.333257 41 0 1159 0 KEEP - Calhm1 YES MNNG_4 chr19 47388619 47388619 C T exonic Sh3pxd2a synonymous SNV NM_001164717:c.G510A:p.Q170Q exonic Sh3pxd2a synonymous SNV uc008huy.2:c.G111A:p.Q37Q exonic ENSMUSG00000053617 synonymous SNV ENSMUST00000111796:c.G465A:p.Q155Q 19qC3 NA NA chr19 47388619 GTAxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 192 0 0 97.471997 0.465116 0.02 0.843373 46 40 1250 1042 60 60 0 0 CC 21.958141 73 0 2060 0 KEEP - Sh3pxd2a YES MNNG_4 chr19 47937916 47937916 G A exonic Gsto1 nonsynonymous SNV NM_010362:c.G513A:p.M171I exonic Gsto1 nonsynonymous SNV uc008hvq.1:c.G513A:p.M171I exonic ENSMUSG00000025068 nonsynonymous SNV ENSMUST00000026050:c.G513A:p.M171I 19qD1 NA NA chr19 47937916 TATxGTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 74 0 0 13.585639 0.304348 0.02 -0.201093 16 7 437 164 60 60 0 0 GG 10.829634 36 0 1028 0 KEEP + Gsto1 YES MNNG_4 chr19 53076972 53076972 G A exonic Xpnpep1 synonymous SNV NM_133216:c.C1311T:p.I437I exonic Xpnpep1 synonymous SNV uc008hwf.1:c.C1182T:p.I394I exonic ENSMUSG00000025027 synonymous SNV ENSMUST00000069988:c.C1182T:p.I394I 19qD2 NA NA chr19 53076972 GTGxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 145 2 0 60.636433 0.5 0.02 1.150672 25 25 682 638 60 60 0 0 GG 18.951671 63 0 1795 0 KEEP - Xpnpep1 YES MNNG_4 chr19 5426817 5426817 C T UTR3 AI837181 NA NA UTR3 "AI837181,Bles03" NA NA UTR3 ENSMUSG00000047423 NA NA 19qA NA NA chr19 5426817 CTGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 159 0 0 77.802389 0.407407 0.02 0.791214 48 33 1281 858 60 60 0 0 CC 18.044445 60 0 1661 0 KEEP + AI837181 YES MNNG_4 chr19 56113683 56113683 G A intergenic "Tcf7l2(dist=105538),Habp2(dist=248745)" NA NA ncRNA_exonic AK052788 NA NA intergenic "ENSMUSG00000024985(dist=105539),ENSMUSG00000077223(dist=238325)" NA NA 19qD2 NA NA chr19 56113683 CTGxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668436 0.668523 0.999869 55 0 0 39.222952 0.551724 0.02 -0.253834 13 16 353 403 60 60 0 0 GG 6.316634 21 0 587 0 KEEP NA Tcf7l2 YES MNNG_4 chr19 56415074 56415074 G A exonic Nrap nonsynonymous SNV NM_198059:c.C3424T:p.P1142S exonic Nrap nonsynonymous SNV uc012bnq.1:c.C2494T:p.P832S exonic "ENSMUSG00000049134,ENSMUSG00000092491" nonsynonymous SNV ENSMUST00000095947:c.C3178T:p.P1060S 19qD2 NA NA chr19 56415074 AGGxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 136 0 0 40.142295 0.333333 0.02 1.124306 36 18 978 465 60 60 0 0 GG 18.348844 61 0 1724 0 KEEP - Nrap YES MNNG_4 chr19 6988547 6988547 C T intronic Esrra NA NA intronic Esrra NA NA intronic ENSMUSG00000024955 NA NA 19qA NA NA chr19 6988547 CACxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 77 0 0 56.046039 0.578947 0.02 -0.332958 16 22 426 568 60 60 0 0 CC 10.226506 34 0 947 0 KEEP - Esrra YES MNNG_4 chr1 10106834 10106834 G A intronic Cspp1 NA NA intronic Cspp1 NA NA intronic ENSMUSG00000056763 NA NA 1qA2 NA NA chr1 10106834 CTGxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 142 0 0 47.904648 0.392157 0.02 1.150169 31 20 859 532 60 60 0 0 GG 20.756234 69 0 1959 0 KEEP + Cspp1 YES MNNG_4 chr1 11143661 11143661 G A exonic Prex2 synonymous SNV NM_029525:c.G2127A:p.Q709Q exonic Prex2 synonymous SNV uc007ahu.1:c.G273A:p.Q91Q exonic ENSMUSG00000048960 synonymous SNV ENSMUST00000027056:c.G2127A:p.Q709Q 1qA2 NA NA chr1 11143661 ACAxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.6681 0.668523 0.999366 51 0 0 46.917873 0.62069 0.02 -0.254236 11 18 297 467 60 60 0 0 GG 5.113453 17 0 477 0 KEEP + Prex2 YES MNNG_4 chr1 121423946 121423946 C T exonic Tmem185b nonsynonymous SNV NM_146103:c.C859T:p.P287S exonic Tmem185b nonsynonymous SNV uc007ciu.1:c.C859T:p.P287S ncRNA_exonic ENSMUSG00000037015 NA NA 1qE2.3 NA NA chr1 121423946 TTTxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582905 0.58293 0.999957 58 0 0 12.679356 0.230769 0.02 -0.226994 20 6 531 159 60 60 0 0 CC 7.768276 26 0 704 0 KEEP + Tmem185b YES MNNG_4 chr1 122374492 122374492 C T exonic Marco nonsynonymous SNV NM_010766:c.G1141A:p.G381R exonic Marco nonsynonymous SNV uc007cjl.1:c.G1141A:p.G381R exonic ENSMUSG00000026390 nonsynonymous SNV ENSMUST00000027639:c.G1141A:p.G381R 1qE2.3 NA NA chr1 122374492 GCCxAGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 255 0 0 120.589418 0.521277 0.02 0.773238 45 49 1257 1255 60 60 0 0 CC 37.591488 125 0 3521 0 KEEP - Marco YES MNNG_4 chr1 123331213 123331213 C T exonic Ccdc93 nonsynonymous SNV NM_001025156:c.C146T:p.P49L exonic Ccdc93 nonsynonymous SNV uc007cjr.1:c.C146T:p.P49L exonic ENSMUSG00000026339 nonsynonymous SNV ENSMUST00000036025:c.C146T:p.P49L 1qE2.3 NA NA chr1 123331213 CTCxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162446 0.162467 0.999869 39 0 0 15.064194 0.461538 0.02 -0.113988 7 6 194 161 60 60 0 0 CC 6.305024 21 0 579 0 KEEP + Ccdc93 YES MNNG_4 chr1 123450585 123450585 C T exonic Ddx18 synonymous SNV NM_025860:c.G1971A:p.Q657Q exonic Ddx18 synonymous SNV uc007cjw.2:c.G1971A:p.Q657Q exonic ENSMUSG00000001674 synonymous SNV ENSMUST00000001724:c.G1971A:p.Q657Q 1qE2.3 NA NA chr1 123450585 GAAxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291975 0.292001 0.999909 53 0 5 11.01351 0.294118 0.02 -0.149043 12 5 321 131 60 60 0 0 CC 8.121001 27 0 749 0 KEEP - Ddx18 YES MNNG_4 chr1 129281527 129281527 C T intronic Mgat5 NA NA intronic Mgat5 NA NA intronic ENSMUSG00000036155 NA NA 1qE3 NA NA chr1 129281527 GTCxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 80 0 0 28.864711 0.444444 0.02 -0.236721 15 12 415 312 60 60 0 0 CC 12.934589 43 0 1209 0 KEEP + Mgat5 YES MNNG_4 chr1 129308848 129308848 C T intronic Mgat5 NA NA intronic Mgat5 NA NA intronic ENSMUSG00000036155 NA NA 1qE3 NA NA chr1 129308848 AGCxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 94 2 0 25.805714 0.34375 0.02 -0.289313 21 11 563 295 60 60 0 0 CC 13.234366 44 0 1230 0 KEEP + Mgat5 YES MNNG_4 chr1 130204443 130204443 C T exonic Lct nonsynonymous SNV NM_001081078:c.G1403A:p.R468K exonic Lct nonsynonymous SNV uc007clm.1:c.G1403A:p.R468K exonic ENSMUSG00000026354 nonsynonymous SNV ENSMUST00000073490:c.G1403A:p.R468K 1qE4 NA NA chr1 130204443 GTCxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 86 2 0 37.473621 0.428571 0.02 -0.315648 20 15 546 407 60 60 0 0 CC 12.021849 40 0 1109 0 KEEP - Lct YES MNNG_4 chr1 132532807 132532807 C T exonic C4bp synonymous SNV NM_007576:c.G1386A:p.K462K exonic C4bp synonymous SNV uc007cmc.1:c.G1386A:p.K462K exonic ENSMUSG00000026405 synonymous SNV ENSMUST00000027657:c.G1386A:p.K462K 1qE4 NA NA chr1 132532807 CTCxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490485 0.490544 0.999879 57 0 0 21.911963 0.391304 0.02 -0.20151 14 9 364 243 60 60 0 0 CC 6.618189 22 0 629 0 KEEP - C4bp YES MNNG_4 chr1 133659806 133659806 C T exonic Slc26a9 stopgain SNV NM_177243:c.C1744T:p.Q582X exonic Slc26a9 stopgain SNV uc007cns.1:c.C1744T:p.Q582X exonic ENSMUSG00000042268 stopgain SNV ENSMUST00000049027:c.C1744T:p.Q582X 1qE4 NA NA chr1 133659806 CAGxAGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 60 0 0 10.367101 0.277778 0.02 -0.157824 13 5 364 126 60 60 0 0 CC 10.200188 34 0 930 0 KEEP + Slc26a9 YES MNNG_4 chr1 133764211 133764211 C T UTR5 Rab7l1 NA NA UTR5 Rab7l1 NA NA UTR5 ENSMUSG00000026433 NA NA 1qE4 NA NA chr1 133764211 AACxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522114 0.522161 0.999909 52 0 0 31.297593 0.5 0.02 -0.21044 12 12 327 328 60 60 0 0 CC 7.211916 24 0 639 0 KEEP + Rab7l1 YES MNNG_4 chr1 134352878 134352878 C T intronic Dstyk NA NA intronic Dstyk NA NA intronic ENSMUSG00000042046 NA NA 1qE4 NA NA chr1 134352878 TATxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.386567 0.387407 0.997832 37 0 0 28.566502 0.55 0.02 -0.175359 9 11 247 293 60 60 0 0 CC 4.805571 16 0 437 0 KEEP + Dstyk YES MNNG_4 chr1 134414903 134414903 C T exonic Cntn2 nonsynonymous SNV NM_177129:c.G2521A:p.D841N exonic Cntn2 nonsynonymous SNV uc007cpb.1:c.G2062A:p.D688N exonic ENSMUSG00000053024 nonsynonymous SNV ENSMUST00000086521:c.G2521A:p.D841N 1qE4 NA NA chr1 134414903 TGTxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.997163 0.997163 1 178 2 0 94.391782 0.521127 0.02 0.974826 34 37 942 981 60 60 0 0 CC 23.463933 78 0 2237 0 KEEP - Cntn2 YES MNNG_4 chr1 135030103 135030103 C T exonic Ppp1r15b synonymous SNV NM_133819:c.C1780T:p.L594L exonic Ppp1r15b synonymous SNV uc007cpt.2:c.C1780T:p.L594L exonic ENSMUSG00000046062 synonymous SNV ENSMUST00000052529:c.C1780T:p.L594L 1qE4 NA NA chr1 135030103 CAGxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322793 0.322807 0.999957 51 0 0 21.770081 0.5 0.02 -0.157807 9 9 250 229 60 60 0 0 CC 7.821237 26 0 740 0 KEEP + Ppp1r15b YES MNNG_4 chr1 135626358 135626358 C T exonic Atp2b4 nonsynonymous SNV NM_001167949:c.G1970A:p.G657D exonic Atp2b4 nonsynonymous SNV uc007cqv.2:c.G1970A:p.G657D exonic ENSMUSG00000026463 nonsynonymous SNV ENSMUST00000048953:c.G1970A:p.G657D 1qE4 NA NA chr1 135626358 TCAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196285 0.196312 0.999863 39 0 0 16.82246 0.5 0.02 -0.122709 7 7 180 177 60 60 0 0 CC 6.002948 20 0 529 0 KEEP - Atp2b4 YES MNNG_4 chr1 135937110 135937110 C T exonic Fmod nonsynonymous SNV NM_021355:c.C310T:p.P104S exonic Fmod nonsynonymous SNV uc007crd.1:c.C310T:p.P104S exonic ENSMUSG00000041559 nonsynonymous SNV ENSMUST00000048183:c.C310T:p.P104S 1qE4 NA NA chr1 135937110 GTGxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 264 0 0 102.577582 0.434343 0.02 0.632234 56 43 1488 1115 60 60 0 0 CC 39.626767 132 0 3603 0 KEEP + Fmod YES MNNG_4 chr1 136369054 136369054 C T exonic Klhl12 synonymous SNV NM_153128:c.C651T:p.D217D exonic Klhl12 synonymous SNV uc007csa.1:c.C651T:p.D217D exonic ENSMUSG00000026455 synonymous SNV ENSMUST00000027725:c.C651T:p.D217D 1qE4 NA NA chr1 136369054 TGAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 90 0 0 50.094104 0.5 0.02 -0.35068 20 20 531 526 60 60 0 0 CC 12.315571 41 0 1105 0 KEEP + Klhl12 YES MNNG_4 chr1 13650555 13650555 C G UTR5 Lactb2 NA NA UTR5 Lactb2 NA NA UTR5 ENSMUSG00000025937 NA NA 1qA3 NA NA chr1 13650555 CCGxCGG C G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522139 0.522161 0.999957 58 0 0 24.794313 0.416667 0.02 -0.210313 14 10 365 271 60 60 0 0 CC 7.817346 26 0 711 0 KEEP - Lactb2 NO MNNG_4 chr1 137351406 137351406 C T exonic Nav1 synonymous SNV NM_173437:c.G3894A:p.E1298E exonic Nav1 synonymous SNV uc007cti.2:c.G531A:p.E177E exonic ENSMUSG00000009418 synonymous SNV ENSMUST00000067414:c.G3714A:p.E1238E 1qE4 NA NA chr1 137351406 CTCxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 101 0 0 41.761751 0.425 0.02 -0.350727 23 17 633 455 60 60 0 0 CC 13.535898 45 0 1264 0 KEEP - Nav1 YES MNNG_4 chr1 137360453 137360453 C T intronic Nav1 NA NA intronic Nav1 NA NA intronic ENSMUSG00000009418 NA NA 1qE4 NA NA chr1 137360453 TGGxGGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 0.999999 80 0 0 49.126667 0.526316 0.02 -0.341579 18 20 395 510 60 60 0 0 CC 10.761428 36 0 842 0 KEEP - Nav1 YES MNNG_4 chr1 14746176 14746176 G C upstream Msc NA NA upstream "AK080352,Msc" NA NA UTR3 ENSMUSG00000054493 NA NA 1qA3 NA NA chr1 14746176 GGTxGGG G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760787 0.760887 0.999869 60 0 0 72.465855 0.757576 0.02 -0.289248 8 25 216 685 60 60 0 0 GG 6.313217 21 0 563 0 KEEP - Msc NO MNNG_4 chr1 14746177 14746177 G A upstream Msc NA NA upstream "AK080352,Msc" NA NA UTR3 ENSMUSG00000054493 NA NA 1qA3 NA NA chr1 14746177 GTGxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780958 0.78106 0.999869 61 0 0 67.440333 0.727273 0.02 -0.289328 9 24 242 644 60 60 0 0 GG 6.298309 21 0 550 0 KEEP - Msc YES MNNG_4 chr1 148748910 148748910 C T exonic Brinp3 nonsynonymous SNV NM_001145807:c.C1964T:p.S655F exonic Fam5c nonsynonymous SNV uc007cxo.2:c.C1964T:p.S655F exonic ENSMUSG00000035131 nonsynonymous SNV ENSMUST00000074622:c.C1964T:p.S655F 1qG1 NA NA chr1 148748910 CATxCCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 73 0 0 19.959098 0.321429 0.02 -0.245425 19 9 510 233 60 60 0 0 CC 11.430621 38 0 1072 0 KEEP + Brinp3 YES MNNG_4 chr1 152235694 152235694 C T exonic BC003331 nonsynonymous SNV NM_001077237:c.G193A:p.D65N exonic BC003331 nonsynonymous SNV uc007cxy.1:c.G193A:p.D65N exonic ENSMUSG00000006010 nonsynonymous SNV ENSMUST00000006167:c.G193A:p.D65N 1qG1 NA NA chr1 152235694 TATxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 114 6 0 42.007433 0.352941 0.02 1.141465 33 18 897 478 60 60 0 0 CC 18.004153 60 0 1648 0 KEEP - BC003331 YES MNNG_4 chr1 152410842 152410842 C T exonic Hmcn1 nonsynonymous SNV NM_001024720:c.G16720A:p.E5574K exonic Hmcn1 nonsynonymous SNV uc007cyj.1:c.G16720A:p.E5574K exonic ENSMUSG00000066842 nonsynonymous SNV ENSMUST00000137197:c.G16369A:p.E5457K 1qG1 NA NA chr1 152410842 GTTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 72 0 0 36.920769 0.441176 0.02 -0.298089 19 15 517 399 60 60 0 0 CC 9.325495 31 0 883 0 KEEP - Hmcn1 YES MNNG_4 chr1 153295676 153295676 C T intronic Trmt1l NA NA intronic "1190005F20Rik,Trm1l" NA NA intronic ENSMUSG00000053286 NA NA 1qG2 NA NA chr1 153295676 ATGxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 0.999999 74 2 0 39.369454 0.576923 0.02 -0.227778 11 15 293 399 60 60 0 0 CC 10.829809 36 0 1031 0 KEEP + Trmt1l YES MNNG_4 chr1 154471040 154471040 C T exonic Rgl1 nonsynonymous SNV NM_016846:c.G46A:p.G16S exonic Rgl1 nonsynonymous SNV uc007czh.1:c.G46A:p.G16S exonic ENSMUSG00000026482 nonsynonymous SNV ENSMUST00000027760:c.G46A:p.G16S 1qG3 NA NA chr1 154471040 CACxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 169 2 0 49.226823 0.444444 0.02 -0.394144 25 20 673 531 60 60 0 0 CC 27.373145 96 1 2591 12 KEEP - Rgl1 YES MNNG_4 chr1 156245810 156245810 C T exonic Cacna1e nonsynonymous SNV NM_009782:c.G6535A:p.G2179S exonic Cacna1e nonsynonymous SNV uc007dav.1:c.G6535A:p.G2179S exonic ENSMUSG00000004110 nonsynonymous SNV ENSMUST00000004214:c.G6535A:p.G2179S 1qG3 NA NA chr1 156245810 GGCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.99986 44 0 0 36.898717 0.636364 0.02 -0.192691 8 14 208 365 60 60 0 0 CC 5.7136 19 0 525 0 KEEP - Cacna1e YES MNNG_4 chr1 156979639 156979639 G C exonic Mr1 nonsynonymous SNV NM_008209:c.C719G:p.A240G exonic Mr1 nonsynonymous SNV uc007day.1:c.C719G:p.A240G exonic ENSMUSG00000026471 nonsynonymous SNV ENSMUST00000027744:c.C719G:p.A240G 1qG3 NA NA chr1 156979639 TGGxCAA G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 313 3 0 65.493683 0.247934 0.02 2.134085 91 30 2452 806 60 60 0 0 GG 42.409291 141 0 3905 0 KEEP - Mr1 NO MNNG_4 chr1 157021269 157021269 C T exonic Stx6 synonymous SNV NM_021433:c.C189T:p.D63D exonic Stx6 synonymous SNV uc007dbb.1:c.C189T:p.D63D exonic ENSMUSG00000026470 synonymous SNV ENSMUST00000027743:c.C189T:p.D63D 1qG3 NA NA chr1 157021269 GGAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 123 0 0 51.532363 0.552632 0.02 -0.332765 17 21 446 529 60 60 0 0 CC 19.187612 64 0 1748 0 KEEP + Stx6 YES MNNG_4 chr1 157179344 157179344 C T exonic Xpr1 synonymous SNV NM_011273:c.G396A:p.K132K exonic Xpr1 synonymous SNV uc007dbf.1:c.G396A:p.K132K exonic ENSMUSG00000026469 synonymous SNV ENSMUST00000027741:c.G396A:p.K132K 1qG3 NA NA chr1 157179344 CAGxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 98 0 0 36.118451 0.441176 0.02 -0.298103 19 15 526 391 60 60 0 0 CC 15.040065 50 0 1407 0 KEEP - Xpr1 YES MNNG_4 chr1 158214513 158214513 C T exonic Tdrd5 nonsynonymous SNV NM_001134741:c.G1426A:p.D476N exonic Tdrd5 nonsynonymous SNV uc007dcf.3:c.G886A:p.D296N ncRNA_exonic ENSMUSG00000060985 NA NA 1qG3 NA NA chr1 158214513 TATxTAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 60 0 0 39.295405 0.555556 0.02 -0.236738 12 15 331 402 60 60 0 0 CC 8.12296 27 0 786 0 KEEP - Tdrd5 YES MNNG_4 chr1 158586619 158586619 C T exonic Tor3a synonymous SNV NM_023141:c.G891A:p.E297E exonic Tor3a synonymous SNV uc007dcn.2:c.G891A:p.E297E exonic ENSMUSG00000060519 synonymous SNV ENSMUST00000079625:c.G891A:p.E297E 1qH1 NA NA chr1 158586619 GATxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490511 0.490544 0.999931 58 0 0 21.506734 0.391304 0.02 -0.201657 14 9 383 239 60 60 0 0 CC 7.519416 25 0 706 0 KEEP - Tor3a YES MNNG_4 chr1 161272907 161272907 C T intronic Rfwd2 NA NA intronic Rfwd2 NA NA intronic ENSMUSG00000040782 NA NA 1qH1 NA NA chr1 161272907 CCTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 300 4 0 93.082154 0.44186 0.02 0.834537 48 38 1329 1006 60 60 0 0 CC 51.432699 171 0 4827 0 KEEP + Rfwd2 YES MNNG_4 chr1 171454022 171454022 C T intronic Nuf2 NA NA intronic Nuf2 NA NA intronic ENSMUSG00000026683 NA NA 1qH3 NA NA chr1 171454022 TGAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 86 0 0 30.834844 0.448276 0.02 -0.254237 16 13 430 333 60 60 0 0 CC 12.931925 43 0 1179 0 KEEP - Nuf2 YES MNNG_4 chr1 172078126 172078126 C T splicing Uap1(NM_133806:exon10:c.1406+1G>A) NA NA splicing "Uap1(uc007dlw.1:exon10:c.1406+1G>A,uc007dlx.1:exon10:c.1409+1G>A)" NA NA splicing "ENSMUSG00000026670(ENSMUST00000111351:exon10:c.1409+1G>A,ENSMUST00000027981:exon10:c.1406+1G>A)" NA NA 1qH3 NA NA chr1 172078126 TTAxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 217 2 0 101.14445 0.461538 0.02 0.702205 49 42 1330 1084 60 60 0 0 CC 25.556888 85 0 2392 0 KEEP - Uap1 YES MNNG_4 chr1 173210342 173210342 C T exonic Ppox synonymous SNV NM_008911:c.G267A:p.G89G exonic Ppox synonymous SNV uc007dns.1:c.G267A:p.G89G exonic ENSMUSG00000062729 synonymous SNV ENSMUST00000073120:c.G267A:p.G89G 1qH3 NA NA chr1 173210342 ATCxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 120 2 0 39.66549 0.395349 0.02 -0.402888 26 17 692 441 60 60 0 0 CC 18.348025 61 0 1704 0 KEEP - Ppox YES MNNG_4 chr1 173213515 173213515 C T exonic Usp21 nonsynonymous SNV NM_013919:c.G1279A:p.E427K exonic Usp21 nonsynonymous SNV uc007dnu.1:c.G352A:p.E118K exonic ENSMUSG00000053483 nonsynonymous SNV ENSMUST00000065941:c.G1279A:p.E427K 1qH3 NA NA chr1 173213515 CCTxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 69 0 0 16.314313 0.388889 0.02 -0.15781 11 7 301 182 60 60 0 0 CC 12.327794 41 0 1152 0 KEEP - Usp21 YES MNNG_4 chr1 174039948 174039948 C T exonic Copa nonsynonymous SNV NM_009938:c.C1334T:p.T445I exonic Copa nonsynonymous SNV uc007dpn.2:c.C1334T:p.T445I exonic ENSMUSG00000026553 nonsynonymous SNV ENSMUST00000172129:c.C1052T:p.T351I 1qH3 NA NA chr1 174039948 TCAxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 85 0 0 29.541878 0.419355 0.02 -0.271671 18 13 474 325 60 60 0 0 CC 12.028771 40 0 1093 0 KEEP + Copa YES MNNG_4 chr1 174043491 174043491 C T exonic Copa nonsynonymous SNV NM_009938:c.C2194T:p.H732Y exonic Copa nonsynonymous SNV uc007dpo.1:c.C355T:p.H119Y exonic ENSMUSG00000026553 nonsynonymous SNV ENSMUST00000172129:c.C1912T:p.H638Y 1qH3 NA NA chr1 174043491 GGCxATT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 120 0 0 61.07822 0.571429 0.02 -0.368173 18 24 497 621 60 60 0 0 CC 17.228362 60 1 1706 7 KEEP + Copa YES MNNG_4 chr1 176538683 176538683 A G exonic Fmn2 synonymous SNV NM_019445:c.A2088G:p.A696A exonic Fmn2 synonymous SNV uc007dtd.2:c.A2088G:p.A696A exonic ENSMUSG00000028354 synonymous SNV ENSMUST00000030039:c.A2088G:p.A696A 1qH3 NA NA chr1 176538683 TGCxGAC A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 124 0 0 56.783655 0.471698 0.02 1.132866 28 25 757 608 60 60 0 0 AA 17.745396 59 0 1627 0 KEEP + Fmn2 NO MNNG_4 chr1 181891315 181891315 C T exonic Cdc42bpa synonymous SNV NM_001033285:c.C75T:p.C25C exonic Cdc42bpa synonymous SNV uc007dvu.2:c.C75T:p.C25C exonic ENSMUSG00000026490 synonymous SNV ENSMUST00000076687:c.C75T:p.C25C 1qH4 NA NA chr1 181891315 GTGxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 124 0 0 58.021606 0.511111 0.02 -0.412088 22 23 612 606 60 60 0 0 CC 18.648601 62 0 1745 0 KEEP + Cdc42bpa YES MNNG_4 chr1 184212758 184212758 A G exonic Degs1 nonsynonymous SNV NM_007853:c.T77C:p.I26T exonic Degs1 nonsynonymous SNV uc007dxw.1:c.T77C:p.I26T exonic ENSMUSG00000038633 nonsynonymous SNV ENSMUST00000035295:c.T77C:p.I26T 1qH5 NA NA chr1 184212758 AAGxTCT A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 125 2 0 44.790265 0.418605 0.02 -0.385762 25 18 656 489 60 60 0 1 AA 16.540399 55 0 1496 0 KEEP - Degs1 NO MNNG_4 chr1 186630982 186630982 C T exonic Marc1 nonsynonymous SNV NM_001081361:c.G370A:p.D124N exonic Mosc1 nonsynonymous SNV uc007dyo.1:c.G370A:p.D124N exonic ENSMUSG00000026621 nonsynonymous SNV ENSMUST00000048462:c.G370A:p.D124N 1qH5 NA NA chr1 186630982 CGTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 131 0 0 49.906061 0.411765 0.02 1.14145 30 21 823 549 60 60 0 0 CC 20.151645 67 0 1866 0 KEEP - Marc1 YES MNNG_4 chr1 188573178 188573178 C T exonic Rrp15 nonsynonymous SNV NM_026041:c.G10A:p.A4T exonic Rrp15 nonsynonymous SNV uc007dzq.1:c.G10A:p.A4T exonic ENSMUSG00000001305 nonsynonymous SNV ENSMUST00000001339:c.G10A:p.A4T 1qH5 NA NA chr1 188573178 CGGxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 102 0 0 64.498606 0.565217 0.02 -0.401939 20 26 549 659 60 60 0 0 CC 12.931716 43 0 1181 0 KEEP - Rrp15 YES MNNG_4 chr1 190621821 190621821 C T exonic Ush2a synonymous SNV NM_021408:c.C9927T:p.Y3309Y exonic Ush2a synonymous SNV uc007eaf.1:c.C9927T:p.Y3309Y exonic ENSMUSG00000026609 synonymous SNV ENSMUST00000027905:c.C9927T:p.Y3309Y 1qH6 NA NA chr1 190621821 TTAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.488823 0.490544 0.99649 44 0 0 20.905849 0.391304 0.02 -0.201647 14 9 382 233 60 60 0 0 CC 4.512002 15 0 421 0 KEEP + Ush2a YES MNNG_4 chr1 191472756 191472756 C T exonic Cenpf nonsynonymous SNV NM_001081363:c.G8345A:p.S2782N exonic Cenpf nonsynonymous SNV uc007eao.2:c.G8345A:p.S2782N exonic ENSMUSG00000026605 nonsynonymous SNV ENSMUST00000171929:c.G8345A:p.S2782N 1qH6 NA NA chr1 191472756 GAAxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 165 0 0 64.290701 0.555556 0.02 -0.39453 20 25 542 658 60 60 0 0 CC 31.561633 105 0 2908 0 KEEP - Cenpf YES MNNG_4 chr1 191474434 191474434 C T intronic Cenpf NA NA intronic Cenpf NA NA intronic ENSMUSG00000026605 NA NA 1qH6 NA NA chr1 191474434 TAGxACC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.19521 0.196312 0.994391 27 0 0 19.859441 0.571429 0.02 -0.122726 6 8 161 202 60 60 0 0 CC 3.877477 13 0 317 0 KEEP - Cenpf YES MNNG_4 chr1 191648855 191648855 C T intronic Ptpn14 NA NA intronic Ptpn14 NA NA intronic ENSMUSG00000026604 NA NA 1qH6 NA NA chr1 191648855 TTAxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 154 0 0 30.930338 0.35 0.02 -0.376956 26 14 685 355 60 70 0 0 CC 26.766871 89 0 2440 0 KEEP + Ptpn14 YES MNNG_4 chr1 192833511 192833511 C T exonic Mfsd7b nonsynonymous SNV NM_001081259:c.G1460A:p.G487E exonic Mfsd7b nonsynonymous SNV uc007ebu.1:c.G344A:p.G115E exonic ENSMUSG00000066595 nonsynonymous SNV ENSMUST00000085635:c.G1460A:p.G487E 1qH6 NA NA chr1 192833511 TTTxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 84 0 0 52.772118 0.488372 0.02 -0.377026 22 21 611 557 60 60 0 0 CC 10.829459 36 0 1022 0 KEEP - Mfsd7b YES MNNG_4 chr1 193407180 193407180 C T exonic Ints7 nonsynonymous SNV NM_178632:c.C347T:p.P116L exonic Ints7 nonsynonymous SNV uc007eco.1:c.C347T:p.P116L exonic ENSMUSG00000037461 nonsynonymous SNV ENSMUST00000045450:c.C347T:p.P116L 1qH6 NA NA chr1 193407180 ACCxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 141 0 0 34.163299 0.357143 0.02 -0.368117 27 15 727 389 60 60 0 0 CC 23.442364 78 0 2169 0 KEEP + Ints7 YES MNNG_4 chr1 193809146 193809146 T C exonic Rd3 nonsynonymous SNV NM_001177900:c.T622C:p.C208R exonic Rd3 nonsynonymous SNV uc007edd.2:c.T695C:p.L232P exonic ENSMUSG00000049353 nonsynonymous SNV ENSMUST00000053463:c.T350C:p.L117P 1qH6 NA NA chr1 193809146 GGCxGTT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 164 0 0 9.09338 0.082192 0.02 0.948801 67 6 1768 152 60 60 0 0 TT 22.558001 75 0 2069 0 KEEP + Rd3 NO MNNG_4 chr1 194946795 194946795 C T exonic Diexf stopgain SNV NM_145415:c.G807A:p.W269X exonic AA408296 stopgain SNV uc007edw.1:c.G807A:p.W269X exonic ENSMUSG00000016181 stopgain SNV ENSMUST00000085555:c.G807A:p.W269X 1qH6 NA NA chr1 194946795 TGCxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 93 2 0 32.384984 0.433333 0.02 -0.263044 17 13 464 351 60 60 0 0 CC 13.53613 45 0 1264 0 KEEP - Diexf YES MNNG_4 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 59 0 0 72.051295 1 0.02 -0.201647 0 23 0 611 0 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO MNNG_4 chr1 196982116 196982116 T A exonic Cr2 nonsynonymous SNV NM_007758:c.A2105T:p.E702V exonic Cr2 nonsynonymous SNV uc007eey.1:c.A2078T:p.E693V exonic ENSMUSG00000026616 nonsynonymous SNV ENSMUST00000082321:c.A2105T:p.E702V 1qH6 NA NA chr1 196982116 TTCxCAG T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 184 1 0 72.41885 0.461538 0.02 0.930161 35 30 937 776 60 60 0 0 TT 27.371684 91 0 2548 0 KEEP - Cr2 NO MNNG_4 chr1 20512968 20512968 G A exonic Pkhd1 synonymous SNV NM_153179:c.C5001T:p.T1667T exonic Pkhd1 synonymous SNV uc007akv.1:c.C5001T:p.T1667T exonic ENSMUSG00000043760 synonymous SNV ENSMUST00000060305:c.C5001T:p.T1667T 1qA4 NA NA chr1 20512968 AAAxGTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 91 2 0 49.776272 0.454545 0.02 -0.394404 24 20 641 534 60 60 0 0 GG 12.320225 41 0 1137 0 KEEP - Pkhd1 YES MNNG_4 chr1 20514005 20514005 C T exonic Pkhd1 nonsynonymous SNV NM_153179:c.G3964A:p.D1322N exonic Pkhd1 nonsynonymous SNV uc007akv.1:c.G3964A:p.D1322N exonic ENSMUSG00000043760 nonsynonymous SNV ENSMUST00000060305:c.G3964A:p.D1322N 1qA4 NA NA chr1 20514005 AGTxAGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 114 0 0 37.715002 0.470588 0.02 -0.298078 18 16 500 403 60 60 0 0 CC 20.757564 69 0 1986 0 KEEP - Pkhd1 YES MNNG_4 chr1 20578607 20578607 G A exonic Pkhd1 synonymous SNV NM_153179:c.C480T:p.T160T exonic Pkhd1 synonymous SNV uc007akv.1:c.C480T:p.T160T exonic ENSMUSG00000043760 synonymous SNV ENSMUST00000060305:c.C480T:p.T160T 1qA4 NA NA chr1 20578607 CCAxGTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 200 2 0 98.957658 0.47561 0.02 0.976338 43 39 1150 1050 60 60 0 0 GG 26.471766 88 0 2497 0 KEEP - Pkhd1 YES MNNG_4 chr1 21392750 21392750 G A exonic Kcnq5 nonsynonymous SNV NM_023872:c.C2296T:p.P766S exonic Kcnq5 nonsynonymous SNV uc007alq.2:c.C2296T:p.P766S exonic ENSMUSG00000028033 nonsynonymous SNV ENSMUST00000173058:c.C1966T:p.P656S 1qA4 NA NA chr1 21392750 GAGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 72 4 0 32.079847 0.52 0.02 -0.219146 12 13 313 334 60 60 0 0 GG 10.526897 35 0 965 0 KEEP - Kcnq5 YES MNNG_4 chr1 21459624 21459624 C T exonic Kcnq5 nonsynonymous SNV NM_001160139:c.G1150A:p.A384T exonic Kcnq5 nonsynonymous SNV uc007alq.2:c.G1150A:p.A384T exonic ENSMUSG00000028033 nonsynonymous SNV ENSMUST00000029667:c.G1150A:p.A384T 1qA4 NA NA chr1 21459624 CAGxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 141 0 0 49.730986 0.375 0.02 1.204374 35 21 938 558 60 60 0 0 CC 18.941119 63 0 1773 0 KEEP - Kcnq5 YES MNNG_4 chr1 24228443 24228443 C T exonic Col9a1 nonsynonymous SNV NM_007740:c.C1529T:p.P510L exonic Col9a1 nonsynonymous SNV uc007amp.2:c.C806T:p.P269L exonic ENSMUSG00000026147 nonsynonymous SNV ENSMUST00000088349:c.C806T:p.P269L 1qA5 NA NA chr1 24228443 CTCxAGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 57 1 0 28.465746 0.55 0.02 -0.17536 9 11 252 292 60 60 0 0 CC 9.024384 30 0 850 0 KEEP + Col9a1 YES MNNG_4 chr1 24244024 24244024 G A exonic Col9a1 nonsynonymous SNV NM_007740:c.G2173A:p.V725M exonic Col9a1 nonsynonymous SNV uc007amp.2:c.G1450A:p.V484M exonic ENSMUSG00000026147 nonsynonymous SNV ENSMUST00000088349:c.G1450A:p.V484M 1qA5 NA NA chr1 24244024 GGAxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457701 0.457757 0.999879 50 0 0 25.697706 0.5 0.02 -0.192635 11 11 301 271 60 60 0 0 GG 6.608219 22 0 603 0 KEEP + Col9a1 YES MNNG_4 chr1 33541597 33541597 C T exonic Prim2 synonymous SNV NM_008922:c.G1077A:p.R359R exonic Prim2 synonymous SNV uc007anr.1:c.G216A:p.R72R exonic ENSMUSG00000026134 synonymous SNV ENSMUST00000097795:c.G462A:p.R154R 1qB NA NA chr1 33541597 TGTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 80 0 0 30.610169 0.40625 0.02 -0.280543 19 13 521 338 60 60 0 0 CC 11.129182 37 0 1046 0 KEEP - Prim2 YES MNNG_4 chr1 34528438 34528438 C T intronic Ptpn18 NA NA intronic Ptpn18 NA NA intronic ENSMUSG00000026126 NA NA 1qB NA NA chr1 34528438 GTCxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 366 1 0 160.799568 0.457143 0.02 1.967234 76 64 2072 1722 60 60 0 0 CC 55.33169 184 0 5123 0 KEEP + Ptpn18 YES MNNG_4 chr1 36402810 36402810 C T exonic Kansl3 synonymous SNV NM_172652:c.G1806A:p.R602R exonic "4632411B12Rik,Kiaa1310" synonymous SNV uc007apz.1:c.G1884A:p.R628R exonic ENSMUSG00000010453 synonymous SNV ENSMUST00000010597:c.G1806A:p.R602R 1qB NA NA chr1 36402810 GTGxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 45 0 0 15.913256 0.388889 0.02 -0.1578 11 7 299 178 60 60 0 0 CC 7.517989 25 0 676 0 KEEP - Kansl3 YES MNNG_4 chr1 36850957 36850957 C T exonic Tmem131 nonsynonymous SNV NM_018872:c.G5281A:p.D1761N exonic Tmem131 nonsynonymous SNV uc007arc.1:c.G1564A:p.D522N exonic ENSMUSG00000026116 nonsynonymous SNV ENSMUST00000027290:c.G5281A:p.D1761N 1qB NA NA chr1 36850957 AATxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 100 0 0 68.960456 0.604651 0.02 -0.377014 17 26 465 691 60 60 0 0 CC 13.10447 44 0 1186 0 KEEP - Tmem131 YES MNNG_4 chr1 39395078 39395078 C T intronic Npas2 NA NA intronic Npas2 NA NA intronic ENSMUSG00000026077 NA NA 1qB NA NA chr1 39395078 CTCxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 64 0 0 13.081207 0.24 0.02 -0.219218 19 6 528 162 60 60 0 0 CC 7.686133 29 1 833 9 KEEP + Npas2 YES MNNG_4 chr1 40180095 40180095 C T exonic Il1r2 nonsynonymous SNV NM_010555:c.C1052T:p.T351I exonic Il1r2 nonsynonymous SNV uc011wjy.1:c.C662T:p.T221I exonic ENSMUSG00000026073 nonsynonymous SNV ENSMUST00000171612:c.C662T:p.T221I 1qB NA NA chr1 40180095 ATAxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 54 0 0 30.697522 0.464286 0.02 -0.245448 15 13 401 329 60 60 0 0 CC 5.715166 19 0 533 0 KEEP + Il1r2 YES MNNG_4 chr1 40659718 40659718 C T exonic Slc9a4 nonsynonymous SNV NM_177084:c.C1001T:p.T334I exonic Slc9a4 nonsynonymous SNV uc007aul.1:c.C1001T:p.T334I exonic ENSMUSG00000026065 nonsynonymous SNV ENSMUST00000027233:c.C1001T:p.T334I 1qB NA NA chr1 40659718 TGAxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 89 0 0 40.966687 0.5 0.02 -0.298058 17 17 456 431 60 60 0 0 CC 13.833613 46 0 1239 0 KEEP + Slc9a4 YES MNNG_4 chr1 44058937 44058937 C T intronic Tpp2 NA NA intronic Tpp2 NA NA intronic ENSMUSG00000041763 NA NA 1qC1.1 NA NA chr1 44058937 TTTxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 145 0 0 53.197319 0.392857 0.02 1.106315 34 22 945 590 60 60 0 0 CC 21.052884 70 0 2002 0 KEEP + Tpp2 YES MNNG_4 chr1 46869037 46869037 C T intronic Slc39a10 NA NA intronic Slc39a10 NA NA intronic ENSMUSG00000025986 NA NA 1qC1.1 "Score=0.931486;Name=No.201,chr1:53440561" NA chr1 46869037 TATxATG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999997 73 2 0 36.342979 0.5 0.02 -0.26247 15 15 402 382 60 60 0 0 CC 9.627043 32 0 927 0 KEEP - Slc39a10 YES MNNG_4 chr1 57445457 57445457 C T exonic Tyw5 synonymous SNV NM_001037742:c.G831A:p.Q277Q exonic 1110034B05Rik synonymous SNV uc011wlg.1:c.G615A:p.Q205Q exonic ENSMUSG00000048495 synonymous SNV ENSMUST00000160404:c.G342A:p.Q114Q 1qC1.3 NA NA chr1 57445457 GATxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 78 0 0 31.438795 0.545455 0.02 -0.201651 10 12 273 323 60 60 0 0 CC 11.131218 37 0 1071 0 KEEP - Tyw5 YES MNNG_4 chr1 58000039 58000039 C T exonic Spats2l nonsynonymous SNV NM_001164566:c.C1235T:p.A412V exonic Spats2l nonsynonymous SNV uc007bbe.2:c.C1235T:p.A412V exonic ENSMUSG00000038305 nonsynonymous SNV ENSMUST00000168940:c.C1211T:p.A404V 1qC1.3 NA NA chr1 58000039 TTGxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 107 2 0 41.207377 0.435897 0.02 -0.341879 22 17 597 447 60 60 0 0 CC 16.241932 54 0 1500 0 KEEP + Spats2l YES MNNG_4 chr1 58024423 58024423 C T exonic Kctd18 synonymous SNV NM_001159864:c.G111A:p.R37R exonic Kctd18 synonymous SNV uc007bbf.2:c.G111A:p.R37R exonic ENSMUSG00000054770 synonymous SNV ENSMUST00000114410:c.G111A:p.R37R 1qC1.3 NA NA chr1 58024423 TCGxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.490543 0.490544 0.999997 86 0 0 18.061832 0.347826 0.02 -0.20166 15 8 415 207 60 60 0 0 CC 13.8298 46 0 1255 0 KEEP - Kctd18 YES MNNG_4 chr1 58285669 58285669 C T intronic Aox4 NA NA intronic Aox4 NA NA intronic ENSMUSG00000038242 NA NA 1qC1.3 NA NA chr1 58285669 GTTxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 103 0 0 73.204679 0.54717 0.02 1.124604 24 29 666 753 60 60 0 0 CC 12.023002 40 0 1116 0 KEEP + Aox4 YES MNNG_4 chr1 58526507 58526507 C T intronic Orc2 NA NA intronic "Nif3l1,Orc2" NA NA intronic "ENSMUSG00000026036,ENSMUSG00000026037" NA NA 1qC1.3 NA NA chr1 58526507 ATTxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.420319 0.423478 0.99254 32 0 0 31.392278 0.571429 0.02 -0.184117 9 12 242 319 60 60 0 0 CC 2.707389 9 0 258 0 KEEP - Orc2 YES MNNG_4 chr1 60584293 60584293 G A exonic Raph1 nonsynonymous SNV NM_001045513:c.C161T:p.S54F exonic Raph1 nonsynonymous SNV uc007bes.1:c.C161T:p.S54F exonic ENSMUSG00000026014 nonsynonymous SNV ENSMUST00000027168:c.C161T:p.S54F 1qC2 NA NA chr1 60584293 GGAxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 108 1 0 9.30635 0.128205 0.02 -0.341978 34 5 941 134 60 60 0 0 GG 13.236882 44 0 1269 0 KEEP - Raph1 YES MNNG_4 chr1 63627674 63627674 C T intronic Adam23 NA NA intronic Adam23 NA NA intronic ENSMUSG00000025964 NA NA 1qC2 NA NA chr1 63627674 TCTxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 97 1 0 45.195106 0.461538 0.02 -0.341905 21 18 566 483 60 60 0 0 CC 14.122391 47 0 1317 0 KEEP + Adam23 YES MNNG_4 chr1 64654434 64654434 C T exonic Mettl21a synonymous SNV NM_025964:c.G537A:p.R179R exonic Fam119a synonymous SNV uc007bgu.1:c.G537A:p.R179R exonic ENSMUSG00000025956 synonymous SNV ENSMUST00000053469:c.G537A:p.R179R 1qC2 NA NA chr1 64654434 ATCxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 162 0 0 81.827383 0.551724 0.02 1.08009 26 32 704 839 60 60 0 0 CC 25.829611 86 0 2352 0 KEEP - Mettl21a YES MNNG_4 chr1 65068492 65068492 C T splicing Akr1cl(NM_027582:exon6:c.444+1G>A) NA NA splicing "Akr1cl(uc007bhc.1:exon6:c.444+1G>A,uc007bhd.1:exon5:c.351+1G>A)" NA NA splicing "ENSMUSG00000025955(ENSMUST00000162800:exon5:c.351+1G>A,ENSMUST00000069142:exon6:c.444+1G>A,ENSMUST00000159566:exon6:c.440+1G>A)" NA NA 1qC2 NA NA chr1 65068492 TCAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 488 2 0 219.446157 0.523256 0.02 2.993039 82 90 2173 2283 60 60 0 0 CC 70.676528 235 0 6451 0 KEEP - Akr1cl YES MNNG_4 chr1 65217528 65217528 C T intronic Idh1 NA NA intronic Idh1 NA NA intronic ENSMUSG00000025950 NA NA 1qC2 NA NA chr1 65217528 TGAxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322793 0.322807 0.999957 48 0 0 24.594481 0.555556 0.02 -0.157787 8 10 213 252 60 60 0 0 CC 7.819528 26 0 711 0 KEEP - Idh1 YES MNNG_4 chr1 66973158 66973158 C T exonic Myl1 nonsynonymous SNV NM_001113387:c.G296A:p.G99D exonic Myl1 nonsynonymous SNV uc007bis.2:c.G296A:p.G99D exonic ENSMUSG00000061816 nonsynonymous SNV ENSMUST00000027151:c.G410A:p.G137D 1qC3 NA NA chr1 66973158 TTGxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641289 0.641347 0.999909 59 0 0 33.943138 0.5 0.02 -0.245471 14 14 381 357 60 60 0 0 CC 7.200923 24 0 634 0 KEEP - Myl1 YES MNNG_4 chr1 69941883 69941883 C T intronic Spag16 NA NA intronic Spag16 NA NA intronic ENSMUSG00000053153 NA NA 1qC3 NA NA chr1 69941883 CTAxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 115 0 0 40.059706 0.386364 0.02 -0.385789 27 17 743 447 60 60 0 0 CC 15.942424 53 0 1489 0 KEEP + Spag16 YES MNNG_4 chr1 71699541 71699541 C T exonic Fn1 nonsynonymous SNV NM_001276408:c.G16A:p.G6R exonic Fn1 nonsynonymous SNV uc007bju.1:c.G16A:p.G6R exonic ENSMUSG00000026193 nonsynonymous SNV ENSMUST00000055226:c.G16A:p.G6R 1qC3 NA NA chr1 71699541 GTCxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 103 0 0 47.164758 0.463415 0.02 -0.359472 22 19 600 504 60 60 0 0 CC 15.921192 53 0 1427 0 KEEP - Fn1 YES MNNG_4 chr1 73062358 73062358 C T exonic Tnp1 nonsynonymous SNV NM_009407:c.G80A:p.G27D exonic Tnp1 nonsynonymous SNV uc007bkz.2:c.G80A:p.G27D exonic ENSMUSG00000026182 nonsynonymous SNV ENSMUST00000027374:c.G80A:p.G27D 1qC3 NA NA chr1 73062358 CCAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423439 0.423478 0.999909 49 0 0 17.853687 0.380952 0.02 -0.184103 13 8 354 201 60 60 0 0 CC 7.211263 24 0 648 0 KEEP - Tnp1 YES MNNG_4 chr1 74205312 74205312 C T exonic Cxcr2 synonymous SNV NM_009909:c.C390T:p.Y130Y exonic Cxcr2 synonymous SNV uc007bll.1:c.C390T:p.Y130Y exonic ENSMUSG00000026180 synonymous SNV ENSMUST00000027372:c.C390T:p.Y130Y 1qC3 NA NA chr1 74205312 CTAxAGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 151 0 0 72.084364 0.462687 0.02 0.807218 36 31 995 774 60 60 0 0 CC 20.4545 68 0 1924 0 KEEP + Cxcr2 YES MNNG_4 chr1 74328130 74328130 C T exonic Aamp nonsynonymous SNV NM_001190444:c.G856A:p.A286T exonic Aamp nonsynonymous SNV uc007blr.2:c.G853A:p.A285T exonic ENSMUSG00000006299 nonsynonymous SNV ENSMUST00000006462:c.G853A:p.A285T 1qC3 NA NA chr1 74328130 TGGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717222 0.717315 0.999869 54 0 0 20.932331 0.322581 0.02 -0.270358 21 10 549 246 60 60 0 0 CC 6.313443 21 0 563 0 KEEP - Aamp YES MNNG_4 chr1 74395966 74395966 C T exonic Pnkd synonymous SNV NM_019999:c.C534T:p.Y178Y exonic Pnkd synonymous SNV uc007blw.1:c.C534T:p.Y178Y exonic ENSMUSG00000026179 synonymous SNV ENSMUST00000087225:c.C534T:p.Y178Y 1qC3 NA NA chr1 74395966 CTAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 158 0 0 54.811289 0.433962 0.02 1.026641 30 23 822 596 60 60 0 0 CC 26.736498 89 0 2400 0 KEEP + Pnkd YES MNNG_4 chr1 75419302 75419302 C T exonic Speg nonsynonymous SNV NM_001085370:c.C4612T:p.P1538S exonic Speg nonsynonymous SNV uc007bpc.1:c.C4612T:p.P1538S exonic ENSMUSG00000026207 nonsynonymous SNV ENSMUST00000087122:c.C6817T:p.P2273S 1qC4 NA NA chr1 75419302 CCTxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 215 3 0 94.180764 0.544118 0.02 0.903848 31 37 839 969 60 60 0 0 CC 38.195678 127 0 3549 0 KEEP + Speg YES MNNG_4 chr1 75472260 75472260 C T exonic Chpf nonsynonymous SNV NM_001001566:c.G1610A:p.G537D exonic Chpf nonsynonymous SNV uc007bph.1:c.G1124A:p.G375D exonic ENSMUSG00000032997 nonsynonymous SNV ENSMUST00000079205:c.G1610A:p.G537D 1qC4 NA NA chr1 75472260 TCAxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 62 1 0 17.191931 0.296296 0.02 -0.236696 19 8 505 205 60 60 0 0 CC 8.721814 29 0 795 0 KEEP - Chpf YES MNNG_4 chr1 75483838 75483838 C T exonic Obsl1 synonymous SNV NM_178884:c.G5097A:p.Q1699Q exonic Obsl1 synonymous SNV uc007bpn.2:c.G5097A:p.Q1699Q exonic ENSMUSG00000026211 synonymous SNV ENSMUST00000064469:c.G2994A:p.Q998Q 1qC4 NA NA chr1 75483838 CGCxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 402 6 0 123.446324 0.398437 0.02 2.072414 77 51 2116 1365 60 60 0 0 CC 61.625829 205 0 5729 0 KEEP - Obsl1 YES MNNG_4 chr1 75531817 75531817 C T exonic Stk11ip synonymous SNV NM_027886:c.C2886T:p.D962D exonic Stk11ip synonymous SNV uc011wnr.1:c.C2181T:p.D727D exonic ENSMUSG00000026213 synonymous SNV ENSMUST00000113553:c.C2886T:p.D962D 1qC4 NA NA chr1 75531817 AGAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 180 0 0 101.73801 0.597015 0.02 1.010014 27 40 732 1023 60 60 0 0 CC 26.749689 89 0 2431 0 KEEP + Stk11ip YES MNNG_4 chr1 82696858 82696858 G A exonic Col4a3 nonsynonymous SNV NM_007734:c.G3605A:p.G1202D exonic Col4a3 nonsynonymous SNV uc007brv.1:c.G3605A:p.G1202D exonic ENSMUSG00000079465 nonsynonymous SNV ENSMUST00000113457:c.G3605A:p.G1202D 1qC5 NA NA chr1 82696858 CCGxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.228369 0.229173 0.99649 34 0 0 13.876732 0.4 0.02 -0.131503 9 6 243 154 60 60 0 0 GG 4.511729 15 0 416 0 KEEP + Col4a3 YES MNNG_4 chr1 84811535 84811535 C T UTR5 Trip12 NA NA UTR5 Trip12 NA NA UTR5 ENSMUSG00000026219 NA NA 1qC5 NA NA chr1 84811535 ACAxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 147 0 0 67.276437 0.41791 0.02 0.91257 39 28 1080 737 60 60 0 0 CC 20.154937 67 0 1908 0 KEEP - Trip12 YES MNNG_4 chr1 87409088 87409088 A T intergenic "NONE(dist=NONE),Sp110(dist=64387)" NA NA intergenic "NONE(dist=NONE),Csprs(dist=23756)" NA NA ncRNA_exonic ENSMUSG00000089714 NA NA 1qC5 "Score=0.98284;Name=No.317,chr1:85175551" NA chr1 87409088 TCCxGAA A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 191 4 79 13.93866 0.2 0.02 -0.306838 28 7 749 182 40 29 0 1 AA 29.778518 99 0 2764 0 KEEP NA NONE NO MNNG_4 chr1 88202538 88202538 C T exonic B3gnt7 synonymous SNV NM_145222:c.C930T:p.H310H exonic B3gnt7 synonymous SNV uc007bvk.2:c.C930T:p.H310H exonic ENSMUSG00000079445 synonymous SNV ENSMUST00000113306:c.C930T:p.H310H 1qD NA NA chr1 88202538 CCAxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 79 0 0 14.829344 0.210526 0.02 -0.33315 30 8 828 195 60 60 0 0 CC 9.622565 32 0 869 0 KEEP + B3gnt7 YES MNNG_4 chr1 88324289 88324289 C A exonic 1700019O17Rik synonymous SNV NM_027966:c.C1344A:p.G448G exonic 1700019O17Rik synonymous SNV uc007bvo.2:c.C1344A:p.G448G ncRNA_exonic ENSMUSG00000036574 NA NA 1qD NA NA chr1 88324289 GGGxTGC C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 171 0 0 10.764054 0.082353 0.02 0.754841 78 7 2109 179 60 60 0 0 CC 20.685449 73 1 2027 11 KEEP + 1700019O17Rik NO MNNG_4 chr1 89023358 89023358 C T exonic Akp3 synonymous SNV NM_007432:c.C912T:p.D304D exonic Akp3 synonymous SNV uc011wom.1:c.C465T:p.D155D exonic ENSMUSG00000036500 synonymous SNV ENSMUST00000044878:c.C912T:p.D304D 1qD NA NA chr1 89023358 GGAxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 40 0 0 12.657217 0.3 0.02 -0.175321 14 6 367 151 60 60 0 0 CC 5.113025 17 0 467 0 KEEP + Akp3 YES MNNG_4 chr1 89107634 89107634 C T intronic Chrng NA NA intronic Chrng NA NA intronic ENSMUSG00000026253 NA NA 1qD NA NA chr1 89107634 CAAxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 39 0 0 19.70903 0.470588 0.02 -0.14905 9 8 248 210 60 60 0 0 CC 4.484158 15 0 385 0 KEEP + Chrng YES MNNG_4 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 348 0 0 16.013798 0.07483 0.02 3.452513 136 11 3394 274 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO MNNG_4 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 354 0 0 17.908804 0.070513 0.02 3.424192 145 11 3979 299 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP NA Ugt1a1 YES MNNG_4 chr1 90112835 90112835 C T exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1207T:p.R403C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1198T:p.R400C exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1201T:p.R401C 1qD NA NA chr1 90112835 AAGxGCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 145 0 0 7.927826 0.083333 0.02 0.965254 55 5 1459 130 60 60 0 0 CC 18.044386 60 0 1644 0 KEEP NA Ugt1a1 YES MNNG_4 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 163 0 0 13.611141 0.123077 0.02 1.028 57 8 1365 203 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP NA Ugt1a1 NO MNNG_4 chr1 90126958 90126958 G A exonic Mroh2a synonymous SNV NM_001281466:c.G303A:p.Q101Q exonic Heatr7b1 synonymous SNV uc011wov.1:c.G303A:p.Q101Q exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000061013:c.G303A:p.Q101Q 1qD NA NA chr1 90126958 GCAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 86 0 0 15.876825 0.16 0.02 1.132597 42 8 1169 216 60 60 0 0 GG 8.716388 29 0 811 0 KEEP + Mroh2a YES MNNG_4 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 202 0 0 20.140304 0.110092 0.02 2.04424 97 12 2698 308 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO MNNG_4 chr1 90137290 90137290 G A exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1771A:p.G591R exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1780A:p.G594R exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1771A:p.G591R 1qD NA NA chr1 90137290 CGGxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 211 0 0 12.529474 0.071429 0.02 2.212666 104 8 2847 212 60 60 0 0 GG 23.158786 77 0 2150 0 KEEP + Mroh2a YES MNNG_4 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 326 0 0 17.252409 0.076336 0.02 3.655552 121 10 3076 278 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO MNNG_4 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 396 1 0 16.496962 0.064865 0.02 2.422885 173 12 4677 300 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a YES MNNG_4 chr1 90141561 90141561 G A exonic Mroh2a nonsynonymous SNV NM_001281466:c.G2476A:p.V826I exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G2485A:p.V829I exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G2476A:p.V826I 1qD NA NA chr1 90141561 CAGxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 410 0 0 43.612456 0.125628 0.02 2.755629 174 25 4734 643 60 60 0 0 GG 53.15415 177 0 4856 0 KEEP + Mroh2a YES MNNG_4 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 241 0 0 16.196743 0.091743 0.02 2.045174 99 10 2726 259 70 60 0 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a YES MNNG_4 chr1 90147949 90147949 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3319T:p.R1107W exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3328T:p.R1110W exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3319T:p.R1107W 1qD NA NA chr1 90147949 ATGxGGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 214 0 0 17.282249 0.1 0.02 2.001953 90 10 2044 266 70 60 0 0 CC 28.221001 94 0 2168 0 KEEP + Mroh2a YES MNNG_4 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 189 0 0 9.31053 0.068966 0.02 0.825913 81 6 2109 159 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO MNNG_4 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 65 0 0 7.197755 0.173913 0.02 -0.201659 19 4 523 99 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a YES MNNG_4 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 209 0 0 23.177134 0.108527 0.02 1.860664 115 14 2935 357 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP - Hjurp NO MNNG_4 chr1 90162727 90162727 G A exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.C805T:p.L269F exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc011wow.1:c.C409T:p.L137F exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000065420:c.C805T:p.L269F 1qD NA NA chr1 90162727 CAAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 554 0 0 91.424548 0.15142 0.02 6.309131 269 48 7453 1270 60 60 1 0 GG 66.163602 220 0 6268 0 KEEP NA A730008H23Rik YES MNNG_4 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 392 1 0 9.617237 0.045455 0.02 3.221414 147 7 3653 186 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP NA A730008H23Rik NO MNNG_4 chr1 92664874 92664874 C T intronic Col6a3 NA NA intergenic "Cops8(dist=154958),Col6a3(dist=7618)" NA NA intronic ENSMUSG00000048126 NA NA 1qD NA NA chr1 92664874 AAAxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 52 0 0 11.903783 0.25 0.02 -0.210374 18 6 469 149 60 60 0 0 CC 6.906643 23 0 601 0 KEEP - Col6a3 YES MNNG_4 chr1 92950324 92950324 C T intronic Lrrfip1 NA NA intronic Lrrfip1 NA NA intronic ENSMUSG00000026305 NA NA 1qD NA NA chr1 92950324 AGAxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 52 0 0 10.781641 0.238095 0.02 -0.184119 16 5 430 134 60 60 0 0 CC 6.616762 22 0 605 0 KEEP + Lrrfip1 YES MNNG_4 chr1 93888050 93888050 C T intronic Hdac4 NA NA intronic Hdac4 NA NA ncRNA_exonic ENSMUSG00000079420 NA NA 1qD NA NA chr1 93888050 CTCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 43 0 0 29.738334 0.611111 0.02 -0.157579 7 11 177 297 60 60 0 0 CC 5.11354 17 0 476 0 KEEP - Hdac4 YES MNNG_4 chr1 94516898 94516898 G A exonic Olfr12 synonymous SNV NM_206896:c.G414A:p.R138R exonic Olfr12 synonymous SNV uc007cbp.2:c.G414A:p.R138R exonic ENSMUSG00000061616 synonymous SNV ENSMUST00000081274:c.G414A:p.R138R 1qD NA NA chr1 94516898 GAGxTAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 353 1 0 10.99675 0.054795 0.02 1.711207 138 8 3695 206 60 60 0 0 GG 47.191305 160 1 4373 8 KEEP + Olfr12 YES MNNG_4 chr1 95337280 95337280 C T exonic Hdlbp nonsynonymous SNV NM_133808:c.G53A:p.G18E exonic Hdlbp nonsynonymous SNV uc007cdx.1:c.G53A:p.G18E exonic ENSMUSG00000034088 nonsynonymous SNV ENSMUST00000042498:c.G53A:p.G18E 1qD NA NA chr1 95337280 AGCxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 147 0 0 56.792959 0.536585 0.02 -0.359475 19 22 518 586 60 60 0 0 CC 24.663707 82 0 2285 0 KEEP - Hdlbp YES MNNG_4 chr1 95921021 95921021 C G exonic Neu4 synonymous SNV NM_173772:c.C465G:p.A155A exonic Neu4 synonymous SNV uc007ceu.1:c.C465G:p.A155A exonic ENSMUSG00000034000 synonymous SNV ENSMUST00000050890:c.C465G:p.A155A 1qD NA NA chr1 95921021 GGCxACC C G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 151 3 0 72.6089 0.485714 0.02 1.081922 36 34 983 775 60 60 0 0 CC 18.042931 60 0 1654 0 KEEP + Neu4 NO MNNG_4 chr2 101537485 101537485 G A exonic Traf6 synonymous SNV NM_009424:c.G1422A:p.R474R exonic Traf6 synonymous SNV uc008lhn.1:c.G1422A:p.R474R exonic ENSMUSG00000027164 synonymous SNV ENSMUST00000004949:c.G1422A:p.R474R 2qE2 NA NA chr2 101537485 ACGxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 57 0 0 41.190759 0.714286 0.02 -0.184118 6 15 167 395 60 60 0 0 GG 9.625069 32 0 898 0 KEEP + Traf6 YES MNNG_4 chr2 102014945 102014945 G A intronic Ldlrad3 NA NA intronic Ldlrad3 NA NA intronic ENSMUSG00000048058 NA NA 2qE2 NA NA chr2 102014945 ACGxACT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 131 4 0 23.227395 0.5625 0.02 -0.149054 7 9 194 237 60 55 0 0 GG 25.266829 84 0 2375 0 KEEP - Ldlrad3 YES MNNG_4 chr2 103107326 103107326 G A intronic Ehf NA NA intronic Ehf NA NA intronic ENSMUSG00000012350 NA NA 2qE2 NA NA chr2 103107326 GTGxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888874 0.888875 0.999999 88 0 0 47.764771 0.463415 0.02 -0.359505 22 19 612 510 60 60 0 0 GG 10.518866 35 0 976 0 KEEP - Ehf YES MNNG_4 chr2 103550906 103550906 G A exonic Abtb2 synonymous SNV NM_178890:c.G2289A:p.V763V exonic Abtb2 synonymous SNV uc008lix.1:c.G2289A:p.V763V exonic ENSMUSG00000032724 synonymous SNV ENSMUST00000076212:c.G2289A:p.V763V 2qE2 NA NA chr2 103550906 GGTxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 68 0 0 43.749308 0.5625 0.02 -0.280503 14 18 382 447 60 60 0 0 GG 8.420744 28 0 777 0 KEEP + Abtb2 YES MNNG_4 chr2 105770992 105770992 G A exonic Immp1l nonsynonymous SNV NM_028260:c.G88A:p.V30I exonic Immp1l nonsynonymous SNV uc008lle.1:c.G88A:p.V30I exonic ENSMUSG00000042670 nonsynonymous SNV ENSMUST00000037499:c.G88A:p.V30I 2qE3 NA NA chr2 105770992 TACxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 251 0 1 110.339625 0.460784 0.02 2.106092 55 47 1380 1185 60 60 0 0 GG 34.274332 114 0 2990 0 KEEP + Immp1l YES MNNG_4 chr2 109848826 109848826 A C intronic Lgr4 NA NA intronic Lgr4 NA NA intronic ENSMUSG00000050199 NA NA 2qE3 NA NA chr2 109848826 GTAxTGC A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 130 1 0 11.096158 0.103448 0.02 1.088956 52 6 1320 166 60 60 0 0 AA 17.14073 57 0 1539 0 KEEP + Lgr4 NO MNNG_4 chr2 110993018 110993018 G A intergenic "Ano3(dist=202617),4930430A15Rik(dist=40393)" NA NA intergenic "Ano3(dist=202617),4930430A15Rik(dist=40393)" NA NA intronic ENSMUSG00000079169 NA NA 2qE3 NA NA chr2 110993018 CAAxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 113 1 0 101.43454 0.698113 0.02 1.132672 16 37 438 979 60 60 0 0 GG 12.634025 42 0 1191 0 KEEP NA Ano3 YES MNNG_4 chr2 112082976 112082976 G A intronic Lpcat4 NA NA intronic Lpcat4 NA NA intronic ENSMUSG00000027134 NA NA 2qE3 NA NA chr2 112082976 GTAxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 1 58 0 0 30.249853 0.647059 0.02 -0.149063 6 11 167 298 60 60 0 0 GG 11.127918 37 0 1048 0 KEEP + Lpcat4 YES MNNG_4 chr2 112674007 112674007 G A exonic Ryr3 synonymous SNV NM_177652:c.C5155T:p.L1719L exonic Ryr3 synonymous SNV uc008lpg.1:c.C5155T:p.L1719L exonic ENSMUSG00000057378 synonymous SNV ENSMUST00000080673:c.C5095T:p.L1699L 2qE3 NA NA chr2 112674007 TTAxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 103 0 0 57.234372 0.479167 0.02 -0.420833 25 23 676 607 60 60 0 0 GG 13.8362 46 0 1280 0 KEEP - Ryr3 YES MNNG_4 chr2 113205370 113205370 G A exonic Fmn1 synonymous SNV NM_001043322:c.G1257A:p.V419V exonic Fmn1 synonymous SNV uc012cbb.1:c.G1257A:p.V419V exonic ENSMUSG00000044042 synonymous SNV ENSMUST00000161731:c.G1257A:p.V419V 2qE4 NA NA chr2 113205370 TGTxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 93 0 0 26.161367 0.342105 0.02 -0.332394 25 13 698 306 60 60 0 0 GG 12.334514 41 0 1185 0 KEEP + Fmn1 YES MNNG_4 chr2 113533210 113533210 G A exonic Fmn1 nonsynonymous SNV NM_001043322:c.G4058A:p.G1353E exonic Fmn1 nonsynonymous SNV uc012cbb.1:c.G3764A:p.G1255E exonic ENSMUSG00000044042 nonsynonymous SNV ENSMUST00000163291:c.G83A:p.G28E 2qE4 NA NA chr2 113533210 CTGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 111 0 0 54.550459 0.44898 0.02 -0.429643 27 22 749 587 60 60 0 0 GG 13.536622 45 0 1275 0 KEEP + Fmn1 YES MNNG_4 chr2 118198796 118198796 G A exonic Gpr176 nonsynonymous SNV NM_201367:c.C128T:p.T43I exonic Gpr176 nonsynonymous SNV uc008lru.2:c.C128T:p.T43I exonic ENSMUSG00000040133 nonsynonymous SNV ENSMUST00000039160:c.C128T:p.T43I 2qE5 NA NA chr2 118198796 GTGxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 149 0 0 62.208236 0.581395 0.02 -0.385612 18 25 476 630 60 60 0 0 GG 23.545215 82 1 2211 9 KEEP - Gpr176 YES MNNG_4 chr2 118544020 118544020 G A intronic Plcb2 NA NA intronic Plcb2 NA NA intronic ENSMUSG00000040061 NA NA 2qE5 NA NA chr2 118544020 GCAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.519729 0.522161 0.995343 42 0 0 16.101962 0.304348 0.02 -0.210125 16 7 445 189 60 60 0 0 GG 4.211613 14 0 402 0 KEEP - Plcb2 YES MNNG_4 chr2 118703691 118703691 G A intronic Ivd NA NA intronic Ivd NA NA intronic ENSMUSG00000027332 NA NA 2qE5 NA NA chr2 118703691 GTGxCTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 168 1 0 61.754303 0.349398 0.02 0.765795 54 29 1412 712 60 60 0 0 GG 18.041188 60 0 1623 0 KEEP + Ivd YES MNNG_4 chr2 119073880 119073880 G A exonic Spint1 synonymous SNV NM_016907:c.G1233A:p.E411E exonic Spint1 synonymous SNV uc008ltk.1:c.G1233A:p.E411E exonic ENSMUSG00000027315 synonymous SNV ENSMUST00000110817:c.G1233A:p.E411E 2qE5 NA NA chr2 119073880 GGAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 55 0 0 39.501062 0.555556 0.02 -0.245417 12 15 319 404 60 60 0 0 GG 5.715377 19 0 538 0 KEEP + Spint1 YES MNNG_4 chr2 119232538 119232538 G A intronic Ino80 NA NA intronic Ino80 NA NA intronic ENSMUSG00000034154 NA NA 2qE5 NA NA chr2 119232538 AAGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 112 0 0 82.322529 0.645833 0.02 -0.420825 17 31 463 811 60 60 0 0 GG 13.171811 44 0 1194 0 KEEP - Ino80 YES MNNG_4 chr2 119350467 119350467 G A intronic Exd1 NA NA intronic Exd1 NA NA intronic ENSMUSG00000048647 NA NA 2qE5 NA NA chr2 119350467 ACAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291966 0.292001 0.999879 46 0 0 13.97157 0.352941 0.02 -0.148945 11 6 293 159 60 60 0 0 GG 6.613649 22 0 615 0 KEEP - Exd1 YES MNNG_4 chr2 119752294 119752294 G A exonic Mga synonymous SNV NM_001164274:c.G3255A:p.V1085V exonic Mga synonymous SNV uc012cbv.1:c.G3018A:p.V1006V exonic ENSMUSG00000033943 synonymous SNV ENSMUST00000110773:c.G3018A:p.V1006V 2qE5 NA NA chr2 119752294 TGTxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 73 0 0 34.417351 0.441176 0.02 -0.298035 19 15 499 374 60 60 0 0 GG 9.623824 32 0 870 0 KEEP + Mga YES MNNG_4 chr2 119789631 119789631 G A exonic Mga nonsynonymous SNV NM_001164274:c.G7432A:p.D2478N exonic "Mga,mKIAA4252" nonsynonymous SNV uc012cbw.1:c.G184A:p.D62N exonic ENSMUSG00000033943 nonsynonymous SNV ENSMUST00000079934:c.G7432A:p.D2478N 2qE5 NA NA chr2 119789631 CGAxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999997 68 0 0 29.139945 0.387097 0.02 -0.271753 19 12 515 324 60 60 0 0 GG 9.614696 32 0 904 0 KEEP + Mga YES MNNG_4 chr2 119891706 119891706 G A intergenic "Pla2g4b(dist=22938),Ehd4(dist=23517)" NA NA intergenic "Pla2g4b(dist=22938),Ehd4(dist=23517)" NA NA exonic ENSMUSG00000074899 stopgain SNV ENSMUST00000110756:c.C2209T:p.Q737X 2qE5 NA NA chr2 119891706 GTTxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 69 4 0 32.548891 0.4375 0.02 -0.280546 18 14 496 354 60 60 0 0 GG 9.023832 30 0 844 0 KEEP NA Pla2g4b YES MNNG_4 chr2 120011098 120011098 G A intronic Pla2g4e NA NA intronic Pla2g4e NA NA intronic ENSMUSG00000050211 NA NA 2qE5 NA NA chr2 120011098 AAGxTAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.667074 0.668523 0.997832 49 0 0 45.315386 0.62069 0.02 -0.254199 11 18 290 451 60 60 0 0 GG 4.811007 16 0 432 0 KEEP - Pla2g4e YES MNNG_4 chr2 120265035 120265035 G A splicing Ganc(NM_172672:exon14:c.1498-1G>A) NA NA splicing "Ganc(uc008lvt.1:exon14:c.1498-1G>A,uc008lvu.1:exon14:c.1039-1G>A,uc008lvv.1:exon13:c.718-1G>A)" NA NA splicing ENSMUSG00000062646(ENSMUST00000135074:exon14:c.1498-1G>A) NA NA 2qE5 NA NA chr2 120265035 CTAxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 133 0 0 62.975329 0.464286 0.02 1.098252 30 26 814 674 60 60 0 0 GG 19.253266 64 0 1840 0 KEEP + Ganc YES MNNG_4 chr2 120548327 120548327 G A intronic Cdan1 NA NA ncRNA_intronic mKIAA1300 NA NA intronic "ENSMUSG00000027284,ENSMUSG00000033705" NA NA 2qE5 NA NA chr2 120548327 AGGxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 89 2 0 66.106207 0.609756 0.02 -0.359464 16 25 438 661 60 60 0 0 GG 11.128411 37 0 1037 0 KEEP - Cdan1 YES MNNG_4 chr2 120571885 120571885 G A exonic Ttbk2 synonymous SNV NM_001024857:c.C2139T:p.G713G exonic Ttbk2 synonymous SNV uc008lwx.1:c.C2139T:p.G713G exonic ENSMUSG00000090100 synonymous SNV ENSMUST00000057135:c.C2139T:p.G713G 2qE5 NA NA chr2 120571885 CAAxCCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 253 0 0 112.979598 0.547619 0.02 0.843563 38 46 1050 1162 60 60 0 0 GG 36.695779 122 0 3410 0 KEEP - Ttbk2 YES MNNG_4 chr2 120845288 120845288 G A exonic Epb4.2 synonymous SNV NM_013513:c.C1975T:p.L659L exonic Epb4.2 synonymous SNV uc008lxi.1:c.C976T:p.L326L exonic ENSMUSG00000023216 synonymous SNV ENSMUST00000102490:c.C1975T:p.L659L 2qE5 NA NA chr2 120845288 CCAxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668451 0.668523 0.999892 58 2 0 25.596773 0.392857 0.02 -0.254253 17 11 470 285 60 60 0 0 GG 6.919091 23 0 659 0 KEEP - Epb4.2 YES MNNG_4 chr2 121124733 121124733 G A exonic Map1a nonsynonymous SNV NM_032393:c.G515A:p.S172N exonic Mtap1a nonsynonymous SNV uc008lyi.2:c.G515A:p.S172N exonic ENSMUSG00000027254 nonsynonymous SNV ENSMUST00000094639:c.G515A:p.S172N 2qE5 NA NA chr2 121124733 AGAxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 53 0 0 20.129152 0.333333 0.02 -0.236729 18 9 497 233 60 60 0 0 GG 5.113172 17 0 480 0 KEEP + Map1a YES MNNG_4 chr2 121278107 121278107 G T exonic Serinc4 nonsynonymous SNV NM_001025371:c.C1309A:p.L437I exonic Serinc4 nonsynonymous SNV uc008lze.1:c.C1309A:p.L437I exonic ENSMUSG00000046110 nonsynonymous SNV ENSMUST00000056312:c.C1309A:p.L437I 2qE5 NA NA chr2 121278107 TAAxGGT G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 117 0 0 41.204986 0.333333 0.02 1.000267 38 19 1052 479 60 60 0 0 GG 14.723277 49 0 1382 0 KEEP - Serinc4 NO MNNG_4 chr2 121282920 121282920 G A exonic Hypk nonsynonymous SNV NM_026318:c.G79A:p.E27K exonic 2310003F16Rik nonsynonymous SNV uc008lzf.2:c.G79A:p.E27K exonic ENSMUSG00000027245 nonsynonymous SNV ENSMUST00000126764:c.G79A:p.E27K 2qE5 NA NA chr2 121282920 CCGxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 167 0 0 85.739147 0.439024 0.02 0.878476 46 36 1263 930 60 60 0 0 GG 19.550573 65 0 1813 0 KEEP + Hypk YES MNNG_4 chr2 125238393 125238393 G A exonic Fbn1 nonsynonymous SNV NM_007993:c.C685T:p.H229Y exonic Fbn1 nonsynonymous SNV uc008mcp.1:c.C685T:p.H229Y exonic ENSMUSG00000027204 nonsynonymous SNV ENSMUST00000103234:c.C685T:p.H229Y 2qF1 NA NA chr2 125238393 GGTxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 62 0 0 45.621403 0.580645 0.02 -0.271728 13 18 343 462 60 60 0 0 GG 7.520023 25 0 704 0 KEEP - Fbn1 YES MNNG_4 chr2 125333016 125333016 G A upstream Fbn1 NA NA UTR5 Fbn1 NA NA UTR5;UTR3 ENSMUSG00000027204;ENSMUSG00000053615 NA NA 2qF1 NA NA chr2 125333016 TGGxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851907 0.851984 0.999909 65 1 0 45.466042 0.473684 0.02 -0.333194 20 18 553 483 60 60 0 0 GG 7.214954 24 0 644 0 KEEP - Fbn1 YES MNNG_4 chr2 126623191 126623191 G A intronic Trpm7 NA NA intronic Trpm7 NA NA intronic ENSMUSG00000027365 NA NA 2qF1 NA NA chr2 126623191 AAGxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 135 0 0 58.743781 0.396825 0.02 0.947668 38 25 1035 652 60 60 0 0 GG 15.941301 53 0 1476 0 KEEP - Trpm7 YES MNNG_4 chr2 126869285 126869285 G A intronic Ap4e1 NA NA intronic Ap4e1 NA NA intronic ENSMUSG00000001998 NA NA 2qF1 NA NA chr2 126869285 AAGxTAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612333 0.612407 0.999879 52 0 0 26.051839 0.423077 0.02 -0.236718 15 11 409 285 60 60 0 0 GG 6.582813 22 0 590 0 KEEP + Ap4e1 YES MNNG_4 chr2 126934315 126934315 T C exonic Ncaph nonsynonymous SNV NM_144818:c.A1757G:p.K586R exonic "Ncaph,mKIAA0074" nonsynonymous SNV uc008mes.2:c.A182G:p.K61R exonic ENSMUSG00000034906 nonsynonymous SNV ENSMUST00000037712:c.A1733G:p.K578R 2qF1 NA NA chr2 126934315 GTCxTTG T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 130 0 0 16.476456 0.16 0.02 -0.438405 42 8 1135 222 60 60 0 0 TT 20.437174 68 0 1853 0 KEEP - Ncaph NO MNNG_4 chr2 127528551 127528551 G A intergenic "Mal(dist=46120),Mall(dist=1575)" NA NA intergenic "AK029760(dist=2327),Mall(dist=1575)" NA NA intergenic "ENSMUSG00000087162(dist=2327),ENSMUSG00000027377(dist=1571)" NA NA 2qF1 NA NA chr2 127528551 CTGxGTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 144 0 0 57.321669 0.45098 0.02 1.150193 28 23 759 616 60 60 0 0 GG 21.647245 72 0 1985 0 KEEP NA Mal YES MNNG_4 chr2 128478419 128478419 G A intronic Anapc1 NA NA intronic Anapc1 NA NA intronic ENSMUSG00000014355 NA NA 2qF1 NA NA chr2 128478419 ACAxCAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760805 0.760887 0.999892 62 0 0 52.52197 0.606061 0.02 -0.289333 13 20 361 526 60 60 0 0 GG 6.91922 23 0 662 0 KEEP - Anapc1 YES MNNG_4 chr2 128935763 128935763 G A intronic Polr1b NA NA intronic Polr1b NA NA intronic ENSMUSG00000027395 NA NA 2qF1 NA NA chr2 128935763 GTGxTTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.998465 0.998465 1 169 0 0 89.244846 0.493333 0.02 0.84271 38 37 1011 942 60 60 0 0 GG 19.550855 65 0 1809 0 KEEP + Polr1b YES MNNG_4 chr2 130232567 130232567 G A exonic Tmem239 stopgain SNV NM_025753:c.G108A:p.W36X exonic 4933425O20Rik stopgain SNV uc008mit.1:c.G108A:p.W36X exonic ENSMUSG00000049692 stopgain SNV ENSMUST00000055421:c.G108A:p.W36X 2qF1 NA NA chr2 130232567 GTGxGTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899303 0.899314 0.999988 76 0 0 63.559338 0.585366 0.02 -0.367516 17 24 465 642 60 60 0 0 GG 8.121555 27 0 757 0 KEEP + Tmem239 YES MNNG_4 chr2 130408245 130408245 G A exonic Avp synonymous SNV NM_009732:c.C33T:p.S11S exonic Avp synonymous SNV uc008mjh.1:c.C33T:p.S11S exonic ENSMUSG00000037727 synonymous SNV ENSMUST00000046001:c.C33T:p.S11S 2qF1 NA NA chr2 130408245 AGCxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 169 0 0 93.219012 0.57377 0.02 1.16049 26 35 671 946 60 60 0 0 GG 26.14188 87 0 2252 0 KEEP - Avp YES MNNG_4 chr2 130901861 130901861 G A exonic Siglec1 nonsynonymous SNV NM_011426:c.C2938T:p.L980F exonic Siglec1 nonsynonymous SNV uc008mko.1:c.C2938T:p.L980F exonic ENSMUSG00000027322 nonsynonymous SNV ENSMUST00000028794:c.C2938T:p.L980F 2qF1 NA NA chr2 130901861 GGAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 161 2 0 116.15553 0.594595 0.02 0.939932 30 44 830 1169 60 60 0 0 GG 19.828956 69 1 1965 8 KEEP - Siglec1 YES MNNG_4 chr2 132619568 132619568 G A exonic Chgb nonsynonymous SNV NM_007694:c.G1693A:p.E565K exonic Chgb nonsynonymous SNV uc008mnf.1:c.G1693A:p.E565K exonic ENSMUSG00000027350 nonsynonymous SNV ENSMUST00000028826:c.G1693A:p.E565K 2qF2 NA NA chr2 132619568 CCAxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954489 0.954491 0.999997 88 0 0 50.877765 0.428571 0.02 -0.429615 28 21 783 554 60 60 0 0 GG 9.625948 32 0 916 0 KEEP + Chgb YES MNNG_4 chr2 143599609 143599609 G A ncRNA_intronic Gm12360 NA NA ncRNA_intronic AK034766 NA NA ncRNA_intronic ENSMUSG00000087115 NA NA 2qG1 NA NA chr2 143599609 TGTxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 112 0 0 65.231545 0.574468 0.02 -0.411947 20 27 557 663 60 60 0 0 GG 14.739587 49 0 1387 0 KEEP - Gm12360 YES MNNG_4 chr2 143764402 143764402 G A exonic Dstn synonymous SNV NM_019771:c.G285A:p.R95R exonic Dstn synonymous SNV uc008mqi.2:c.G285A:p.R95R exonic ENSMUSG00000015932 synonymous SNV ENSMUST00000103172:c.G285A:p.R95R 2qG1 NA NA chr2 143764402 CAGxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.19521 0.196312 0.994391 27 0 0 14.408404 0.428571 0.02 -0.122754 8 6 224 157 60 60 0 0 GG 3.910635 13 0 371 0 KEEP + Dstn YES MNNG_4 chr2 144156621 144156621 G A intronic Ovol2 NA NA intronic Ovol2 NA NA intronic ENSMUSG00000037279 NA NA 2qG1 NA NA chr2 144156621 GGGxGCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 176 0 0 63.873667 0.52 0.02 1.159383 24 26 623 665 60 60 0 0 GG 26.699983 89 0 2421 0 KEEP - Ovol2 YES MNNG_4 chr2 144392704 144392704 G A exonic Sec23b nonsynonymous SNV NM_001281816:c.G116A:p.G39E exonic Sec23b nonsynonymous SNV uc008mrj.1:c.G572A:p.G191E exonic ENSMUSG00000027429 nonsynonymous SNV ENSMUST00000028916:c.G572A:p.G191E 2qG1 NA NA chr2 144392704 GAGxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 100 1 0 58.88848 0.564103 0.02 -0.341965 17 22 465 600 60 60 0 0 GG 15.024404 50 0 1384 0 KEEP + Sec23b YES MNNG_4 chr2 144411370 144411370 G A exonic Sec23b nonsynonymous SNV NM_001281816:c.G1324A:p.V442I exonic Sec23b nonsynonymous SNV uc008mrj.1:c.G1780A:p.V594I exonic ENSMUSG00000027429 nonsynonymous SNV ENSMUST00000028916:c.G1780A:p.V594I 2qG1 NA NA chr2 144411370 CAAxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 104 0 0 64.656955 0.52 0.02 -0.438363 24 26 661 673 60 60 0 0 GG 12.934423 43 0 1210 0 KEEP + Sec23b YES MNNG_4 chr2 145756359 145756359 C A exonic Crnkl1 nonsynonymous SNV NM_025820:c.G533T:p.W178L exonic Crnkl1 nonsynonymous SNV uc008mrz.1:c.G533T:p.W178L exonic ENSMUSG00000001767 nonsynonymous SNV ENSMUST00000001818:c.G533T:p.W178L 2qG1 NA NA chr2 145756359 TGCxATT C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.99986 41 0 0 22.985201 0.529412 0.02 -0.149056 8 9 223 238 60 60 0 0 CC 5.714901 19 0 535 0 KEEP - Crnkl1 NO MNNG_4 chr2 14796402 14796402 G A exonic Cacnb2 synonymous SNV NM_001252533:c.G57A:p.S19S exonic "CacnB2,Cacnb2" nonsynonymous SNV uc008ikn.1:c.G95A:p.R32Q exonic ENSMUSG00000057914 synonymous SNV ENSMUST00000065126:c.G57A:p.S19S 2qA2 NA NA chr2 14796402 TTCxGCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.194952 0.196312 0.993072 29 2 0 9.073778 0.285714 0.02 -0.122637 10 4 232 108 60 60 0 0 GG 3.305166 11 0 275 0 KEEP + Cacnb2 YES MNNG_4 chr2 153058058 153058058 G A exonic Plagl2 synonymous SNV NM_018807:c.C658T:p.L220L exonic Plagl2 synonymous SNV uc008nhj.1:c.C658T:p.L220L exonic ENSMUSG00000051413 synonymous SNV ENSMUST00000056924:c.C658T:p.L220L 2qH1 NA NA chr2 153058058 ACAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 162 0 0 70.649936 0.402778 0.02 1.055139 43 29 1196 779 60 60 0 0 GG 19.252029 64 0 1813 0 KEEP - Plagl2 YES MNNG_4 chr2 153730564 153730564 G A exonic Bpifb6 nonsynonymous SNV NM_199303:c.G478A:p.D160N exonic Bpil3 nonsynonymous SNV uc008nio.2:c.G478A:p.D160N exonic ENSMUSG00000068009 nonsynonymous SNV ENSMUST00000135501:c.G478A:p.D160N 2qH1 NA NA chr2 153730564 GTGxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 201 2 0 80.03782 0.470588 0.02 1.001114 36 32 997 852 60 60 0 0 GG 27.064248 90 0 2544 0 KEEP + Bpifb6 YES MNNG_4 chr2 154357119 154357119 G A exonic Cbfa2t2 nonsynonymous SNV NM_009823:c.G1456A:p.V486I exonic Cbfa2t2 nonsynonymous SNV uc008njf.2:c.G1459A:p.V487I exonic ENSMUSG00000038533 nonsynonymous SNV ENSMUST00000045270:c.G1459A:p.V487I 2qH1 NA NA chr2 154357119 CTGxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 44 0 0 28.944681 0.6 0.02 -0.175083 8 12 218 291 60 60 0 0 GG 5.413816 18 0 495 0 KEEP + Cbfa2t2 YES MNNG_4 chr2 155829178 155829178 G A exonic 6430550D23Rik nonsynonymous SNV NM_001145352:c.C41T:p.P14L exonic 6430550D23Rik nonsynonymous SNV uc008nlw.2:c.C41T:p.P14L exonic ENSMUSG00000074646 nonsynonymous SNV ENSMUST00000086145:c.C41T:p.P14L 2qH1 NA NA chr2 155829178 GATxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 109 2 0 47.522598 0.4 0.02 -0.438386 30 20 828 526 60 60 0 0 GG 14.431709 48 0 1345 0 KEEP - 6430550D23Rik YES MNNG_4 chr2 155903677 155903677 G A exonic Cpne1 synonymous SNV NM_170590:c.C786T:p.V262V exonic Cpne1 synonymous SNV uc012chp.1:c.C366T:p.V122V exonic ENSMUSG00000074643 synonymous SNV ENSMUST00000136296:c.C714T:p.V238V 2qH1 NA NA chr2 155903677 CTTxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 271 2 0 109.708543 0.473684 0.02 0.755652 50 45 1394 1168 60 60 0 0 GG 40.279966 134 0 3815 0 KEEP - Cpne1 YES MNNG_4 chr2 162824897 162824897 G A intronic Sgk2 NA NA intronic Sgk2 NA NA intronic ENSMUSG00000017868 NA NA 2qH2 NA NA chr2 162824897 TTTxGTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 105 0 0 40.593727 0.367347 0.02 -0.429498 31 18 849 460 60 60 0 0 GG 13.235861 44 0 1254 0 KEEP + Sgk2 YES MNNG_4 chr2 163298460 163298460 G A ncRNA_exonic 2310001K24Rik NA NA ncRNA_exonic 2310001K24Rik NA NA exonic ENSMUSG00000053353 nonsynonymous SNV ENSMUST00000065731:c.G134A:p.G45D 2qH3 NA NA chr2 163298460 GTGxCCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 83 0 0 47.142432 0.527778 0.02 -0.315598 17 19 458 489 60 60 0 0 GG 12.031679 40 0 1116 0 KEEP + 2310001K24Rik YES MNNG_4 chr2 163837464 163837464 G A exonic Ywhab nonsynonymous SNV NM_018753:c.G124A:p.E42K exonic Ywhab nonsynonymous SNV uc008ntp.1:c.G124A:p.E42K exonic ENSMUSG00000018326 nonsynonymous SNV ENSMUST00000018470:c.G124A:p.E42K 2qH3 NA NA chr2 163837464 GAAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 99 0 0 68.464168 0.590909 0.02 -0.385792 18 26 502 690 60 60 0 0 GG 12.42246 44 1 1264 7 KEEP + Ywhab YES MNNG_4 chr2 167480082 167480082 G A intronic Tmem189 NA NA intronic Tmem189 NA NA intronic "ENSMUSG00000089739,ENSMUSG00000090213" NA NA 2qH3 NA NA chr2 167480082 CACxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877697 0.877708 0.999988 69 0 0 47.555083 0.475 0.02 -0.350358 21 19 456 505 60 60 0 0 GG 8.053601 27 0 582 0 KEEP - Tmem189 YES MNNG_4 chr2 167814729 167814729 G A intronic Fam65c NA NA exonic AK009597 stopgain SNV uc008oam.1:c.C652T:p.Q218X intronic ENSMUSG00000074577 NA NA 2qH3 NA NA chr2 167814729 GCTxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 49 0 0 36.536998 0.6 0.02 -0.219089 10 15 266 367 60 60 0 0 GG 6.31754 21 0 604 0 KEEP - Fam65c YES MNNG_4 chr2 169940457 169940457 G A exonic Zfp217 nonsynonymous SNV NM_001033299:c.C2120T:p.P707L exonic Zfp217 nonsynonymous SNV uc008obu.2:c.C2120T:p.P707L exonic ENSMUSG00000052056 nonsynonymous SNV ENSMUST00000063710:c.C2120T:p.P707L 2qH3 NA NA chr2 169940457 AAGxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948287 0.948402 0.999879 71 0 0 69.480055 0.5625 0.02 -0.420819 21 27 575 709 60 60 0 0 GG 6.617601 22 0 617 0 KEEP - Zfp217 YES MNNG_4 chr2 179933059 179933059 G A exonic Lama5 nonsynonymous SNV NM_001081171:c.C2089T:p.P697S exonic Lama5 nonsynonymous SNV uc008oip.1:c.C2089T:p.P697S exonic ENSMUSG00000015647 nonsynonymous SNV ENSMUST00000015791:c.C2089T:p.P697S 2qH4 NA NA chr2 179933059 TCGxGTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 67 0 0 30.103747 0.48 0.02 -0.219199 13 12 359 319 60 60 0 0 GG 9.021608 30 0 823 0 KEEP - Lama5 YES MNNG_4 chr2 180819952 180819952 G A exonic Kcnq2 nonsynonymous SNV NM_001003824:c.C1786T:p.P596S exonic Kcnq2 nonsynonymous SNV uc008okr.1:c.C1750T:p.P584S exonic ENSMUSG00000016346 nonsynonymous SNV ENSMUST00000016491:c.C1786T:p.P596S 2qH4 NA NA chr2 180819952 TAGxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 94 0 0 30.894629 0.325581 0.02 -0.377 29 14 791 360 60 60 0 0 GG 10.225685 34 0 943 0 KEEP - Kcnq2 YES MNNG_4 chr2 181113209 181113209 G A exonic Zgpat nonsynonymous SNV NM_001048148:c.G703A:p.A235T exonic Zgpat nonsynonymous SNV uc008omc.1:c.G703A:p.A235T exonic ENSMUSG00000027582 nonsynonymous SNV ENSMUST00000108807:c.G703A:p.A235T 2qH4 NA NA chr2 181113209 CCAxCAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 115 0 0 45.702407 0.392157 0.02 1.052876 31 20 851 510 60 60 0 0 GG 16.241467 54 0 1489 0 KEEP + Zgpat YES MNNG_4 chr2 21748901 21748901 A G exonic Gpr158 nonsynonymous SNV NM_001004761:c.A3184G:p.K1062E exonic Gpr158 nonsynonymous SNV uc008inf.1:c.A3184G:p.K1062E exonic ENSMUSG00000045967 nonsynonymous SNV ENSMUST00000055946:c.A3184G:p.K1062E 2qA3 NA NA chr2 21748901 GACxAGA A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 95 0 0 146.163709 1 0.02 -0.411958 0 47 0 1238 0 60 0 0 AA 12.031041 40 0 1104 0 KEEP + Gpr158 NO MNNG_4 chr2 26339927 26339927 G A exonic Notch1 synonymous SNV NM_008714:c.C603T:p.S201S exonic Notch1 synonymous SNV uc008ivl.2:c.C603T:p.S201S exonic ENSMUSG00000026923 synonymous SNV ENSMUST00000170199:c.C558T:p.S186S 2qA3 NA NA chr2 26339927 ATAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 158 0 0 93.172522 0.445783 0.02 0.817031 46 37 1248 1003 60 60 0 0 GG 14.739141 49 0 1375 0 KEEP - Notch1 YES MNNG_4 chr2 29945847 29945847 C T intronic Pkn3 NA NA intronic Pkn3 NA NA intronic ENSMUSG00000026785 NA NA 2qB NA NA chr2 29945847 CTGxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9937 0.993703 0.999998 116 1 0 89.746669 0.553846 0.02 0.930198 29 36 795 920 60 60 0 0 CC 9.625114 32 0 890 0 KEEP + Pkn3 YES MNNG_4 chr2 31202220 31202220 A G intergenic "Ncs1(dist=51229),Ass1(dist=123570)" NA NA intergenic "Ncs1(dist=51229),Hmcn2(dist=91362)" NA NA exonic ENSMUSG00000055632 synonymous SNV ENSMUST00000113532:c.A1254G:p.G418G 2qB NA NA chr2 31202220 TGGxGTT A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 181 1 0 7.952562 0.061728 0.02 0.887137 76 5 2056 137 60 60 0 0 AA 22.559379 75 0 2102 0 KEEP NA Ncs1 NO MNNG_4 chr2 32166049 32166049 A C intronic Dnm1 NA NA intronic "Dnm1,mKIAA4093" NA NA intronic ENSMUSG00000026825 NA NA 2qB NA NA chr2 32166049 CACxCAG A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227502 0.229173 0.992708 29 0 0 14.478024 0.4 0.02 -0.131488 9 6 228 160 60 60 0 0 AA 3.007585 10 0 273 0 KEEP - Dnm1 NO MNNG_4 chr2 34628292 34628292 C T exonic Hspa5 synonymous SNV NM_022310:c.C339T:p.I113I exonic Hspa5 synonymous SNV uc008jit.2:c.C339T:p.I113I exonic ENSMUSG00000026864 synonymous SNV ENSMUST00000100171:c.C339T:p.I113I 2qB NA NA chr2 34628292 CATxAAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 111 0 0 40.007513 0.391304 0.02 -0.403272 28 18 780 448 60 60 0 0 CC 16.847094 56 0 1619 0 KEEP + Hspa5 YES MNNG_4 chr2 35210238 35210238 A G exonic 4930568D16Rik synonymous SNV NM_029463:c.T621C:p.A207A exonic 4930568D16Rik synonymous SNV uc012bum.1:c.T621C:p.A207A exonic ENSMUSG00000026882 synonymous SNV ENSMUST00000028243:c.T621C:p.A207A 2qB NA NA chr2 35210238 TTGxGCT A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 90 0 0 42.586805 0.375 0.02 -0.420705 30 18 802 478 60 60 0 0 AA 9.324948 31 0 872 0 KEEP - 4930568D16Rik NO MNNG_4 chr2 36642244 36642244 C T exonic Olfr348 synonymous SNV NM_146944:c.C198T:p.H66H exonic Olfr348 synonymous SNV uc008jlw.1:c.C198T:p.H66H exonic ENSMUSG00000049315 synonymous SNV ENSMUST00000056865:c.C198T:p.H66H 2qB NA NA chr2 36642244 CCAxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 597 2 0 175.824718 0.431034 0.02 3.170218 99 75 2700 1918 60 60 0 0 CC 96.555736 321 0 9029 0 KEEP + Olfr348 YES MNNG_4 chr2 51972401 51972401 T C exonic Rif1 nonsynonymous SNV NM_175238:c.T6737C:p.V2246A exonic Rif1 nonsynonymous SNV uc008jqt.1:c.T3275C:p.V1092A exonic ENSMUSG00000036202 nonsynonymous SNV ENSMUST00000112692:c.T6638C:p.V2213A 2qC1.1 NA NA chr2 51972401 GTGxTTA T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 146 2 0 18.896086 0.153846 0.02 1.224072 55 10 1420 262 60 60 0 0 TT 17.444578 58 0 1598 0 KEEP + Rif1 NO MNNG_4 chr2 57191340 57191340 G A exonic Gpd2 synonymous SNV NM_001145820:c.G744A:p.E248E exonic Gpd2 synonymous SNV uc008jsc.2:c.G744A:p.E248E exonic ENSMUSG00000026827 synonymous SNV ENSMUST00000028167:c.G744A:p.E248E 2qC1.1 NA NA chr2 57191340 GGAxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 172 0 0 87.064277 0.492754 0.02 1.090679 35 34 924 916 60 60 0 0 GG 24.363152 81 0 2272 0 KEEP + Gpd2 YES MNNG_4 chr2 64860726 64860726 G A UTR5 Grb14 NA NA UTR5 Grb14 NA NA UTR5 ENSMUSG00000026888 NA NA 2qC1.3 NA NA chr2 64860726 GGAxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 94 2 0 34.81761 0.441176 0.02 -0.298049 19 15 507 378 60 60 0 0 GG 12.539162 42 0 1101 0 KEEP - Grb14 YES MNNG_4 chr2 67345222 67345222 A G exonic Xirp2 synonymous SNV NM_001024618:c.A477G:p.P159P exonic Xirp2 synonymous SNV uc008jxj.1:c.A477G:p.P159P exonic ENSMUSG00000027022 synonymous SNV ENSMUST00000028410:c.A477G:p.P159P 2qC1.3 NA NA chr2 67345222 CCCxGCC A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 114 0 0 8.442121 0.119048 0.02 -0.368194 37 5 983 127 60 60 0 0 AA 17.73284 59 0 1609 0 KEEP + Xirp2 NO MNNG_4 chr2 67349914 67349914 G A exonic Xirp2 nonsynonymous SNV NM_001024618:c.G4441A:p.G1481R exonic Xirp2 nonsynonymous SNV uc012bwn.1:c.G3784A:p.G1262R exonic ENSMUSG00000027022 nonsynonymous SNV ENSMUST00000028410:c.G4441A:p.G1481R 2qC1.3 NA NA chr2 67349914 CTGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.352299 0.353947 0.995343 33 0 0 29.528068 0.578947 0.02 -0.166596 8 11 218 299 60 60 0 0 GG 4.210803 14 0 388 0 KEEP + Xirp2 YES MNNG_4 chr2 68058994 68058994 G A exonic Stk39 synonymous SNV NM_016866:c.C1563T:p.D521D exonic Stk39 synonymous SNV uc008jxn.1:c.C834T:p.D278D exonic ENSMUSG00000027030 synonymous SNV ENSMUST00000102715:c.C1563T:p.D521D 2qC1.3 NA NA chr2 68058994 GGGxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 226 0 0 122.687591 0.520408 0.02 0.64147 47 51 1246 1279 60 60 0 0 GG 27.030506 90 0 2389 0 KEEP - Stk39 YES MNNG_4 chr2 69035183 69035183 G A intronic Spc25 NA NA intronic Spc25 NA NA intronic ENSMUSG00000005233 NA NA 2qC2 NA NA chr2 69035183 CAGxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 107 0 0 63.671804 0.510204 0.02 -0.429633 24 25 665 665 60 60 0 0 GG 13.791225 46 0 1275 0 KEEP - Spc25 YES MNNG_4 chr2 69115907 69115907 G A exonic Abcb11 nonsynonymous SNV NM_021022:c.C2102T:p.S701F exonic Abcb11 nonsynonymous SNV uc008jya.1:c.C2102T:p.S701F exonic ENSMUSG00000027048 nonsynonymous SNV ENSMUST00000102710:c.C2102T:p.S701F 2qC2 NA NA chr2 69115907 TTAxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 52 0 0 20.197104 0.5 0.02 -0.14891 8 8 224 212 60 60 0 0 GG 7.820641 26 0 736 0 KEEP - Abcb11 YES MNNG_4 chr2 69321721 69321721 G A exonic Lrp2 nonsynonymous SNV NM_001081088:c.C6722T:p.A2241V exonic Lrp2 nonsynonymous SNV uc008jyc.1:c.C6722T:p.A2241V exonic ENSMUSG00000027070 nonsynonymous SNV ENSMUST00000080953:c.C6722T:p.A2241V 2qC2 NA NA chr2 69321721 ACTxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 119 0 0 46.454072 0.396226 0.02 0.938688 32 21 888 519 60 60 0 0 GG 15.915699 53 0 1445 0 KEEP - Lrp2 YES MNNG_4 chr2 70297132 70297132 G A intergenic "Myo3b(dist=29880),Sp5(dist=15848)" NA NA intergenic "Myo3b(dist=29880),Sp5(dist=15848)" NA NA ncRNA_exonic ENSMUSG00000047965 NA NA 2qC2 NA NA chr2 70297132 AGGxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196294 0.196312 0.999909 56 0 13 17.722598 0.5 0.02 -0.122754 7 7 195 186 29 36 0 0 GG 8.401536 28 0 737 0 KEEP NA Myo3b YES MNNG_4 chr2 70297234 70297234 G A intergenic "Myo3b(dist=29982),Sp5(dist=15746)" NA NA intergenic "Myo3b(dist=29982),Sp5(dist=15746)" NA NA ncRNA_exonic ENSMUSG00000047965 NA NA 2qC2 NA NA chr2 70297234 AAGxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 185 2 1 76.576599 0.526316 0.02 0.991478 27 30 739 794 60 57 0 0 GG 31.883123 106 0 2990 0 KEEP NA Myo3b YES MNNG_4 chr2 70911229 70911229 G A exonic Dcaf17 synonymous SNV NM_001165980:c.G510A:p.Q170Q exonic Dcaf17 synonymous SNV uc008kab.2:c.G510A:p.Q170Q exonic ENSMUSG00000041966 synonymous SNV ENSMUST00000064141:c.G510A:p.Q170Q 2qC2 NA NA chr2 70911229 TCAxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 73 0 0 26.598734 0.392857 0.02 -0.245515 17 11 471 295 60 60 0 0 GG 10.513769 35 0 980 0 KEEP + Dcaf17 YES MNNG_4 chr2 72809450 72809450 G A exonic Sp3 nonsynonymous SNV NM_001098425:c.C206T:p.T69I exonic Sp3 nonsynonymous SNV uc008kca.1:c.C206T:p.T69I exonic ENSMUSG00000027109 nonsynonymous SNV ENSMUST00000066003:c.C275T:p.T92I 2qC3 NA NA chr2 72809450 GAAxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 73 0 0 46.422446 0.580645 0.02 -0.271782 13 18 353 470 60 60 0 0 GG 11.429968 38 0 1063 0 KEEP - Sp3 YES MNNG_4 chr2 75776601 75776601 G A upstream Ttc30b NA NA upstream Ttc30b NA NA upstream ENSMUSG00000075273 NA NA 2qC3 NA NA chr2 75776601 CTGxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 185 0 0 115.975999 0.528736 0.02 0.728694 41 46 1128 1202 60 60 0 0 GG 23.462877 78 0 2206 0 KEEP - Ttc30b YES MNNG_4 chr2 76485205 76485205 G A exonic Prkra nonsynonymous SNV NM_011871:c.C212T:p.T71I exonic Prkra nonsynonymous SNV uc008kff.1:c.C212T:p.T71I exonic ENSMUSG00000002731 nonsynonymous SNV ENSMUST00000002808:c.C212T:p.T71I 2qC3 NA NA chr2 76485205 ACGxTTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 68 0 0 33.505131 0.451613 0.02 -0.271779 17 14 461 361 60 60 0 0 GG 8.722489 29 0 807 0 KEEP - Prkra YES MNNG_4 chr2 76578104 76578104 G A exonic Ttn nonsynonymous SNV NM_028004:c.C55520T:p.A18507V exonic Ttn nonsynonymous SNV uc008kfo.1:c.C55520T:p.A18507V exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.C55520T:p.A18507V 2qC3 NA NA chr2 76578104 GCCxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 100 0 0 71.988588 0.517857 0.02 1.009223 27 29 678 750 60 60 0 0 GG 12.323626 41 0 1061 0 KEEP - Ttn YES MNNG_4 chr2 76590133 76590133 G A exonic Ttn synonymous SNV NM_028004:c.C43491T:p.F14497F exonic Ttn synonymous SNV uc008kfo.1:c.C43491T:p.F14497F exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000011934:c.C43491T:p.F14497F 2qC3 NA NA chr2 76590133 TTGxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 193 0 0 100.887453 0.43617 0.02 0.675808 53 41 1460 1093 60 60 0 0 GG 21.613087 72 0 2027 0 KEEP - Ttn YES MNNG_4 chr2 76618949 76618949 G A exonic Ttn nonsynonymous SNV NM_028004:c.C27314T:p.T9105I exonic Ttn nonsynonymous SNV uc008kfo.1:c.C27314T:p.T9105I exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.C27314T:p.T9105I 2qC3 NA NA chr2 76618949 TAGxTAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 248 0 0 105.243293 0.444444 0.02 0.632132 55 44 1462 1138 60 60 0 0 GG 32.453919 108 0 2899 0 KEEP - Ttn YES MNNG_4 chr2 76628450 76628450 G A intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76628450 TCAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229143 0.229173 0.999869 42 0 0 27.119065 0.666667 0.02 -0.131516 5 10 138 265 60 60 0 0 GG 6.317769 21 0 609 0 KEEP - Ttn YES MNNG_4 chr2 76671054 76671054 G A intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 "Score=0.990319;Name=No.75182,chr2:76666372" NA chr2 76671054 TGAxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 259 0 81 76.682393 0.568627 0.02 1.141423 22 29 601 780 36 36 0 0 GG 40.611144 135 0 3877 0 KEEP - Ttn YES MNNG_4 chr2 76671309 76671309 G A intronic Ttn NA NA intronic Ttn NA NA exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000070199:c.C2438T:p.P813L 2qC3 NA NA chr2 76671309 TTAxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 149 0 0 57.814632 0.489362 0.02 -0.412018 24 23 658 610 60 60 0 0 GG 22.260545 74 0 2105 0 KEEP - Ttn YES MNNG_4 chr2 76684871 76684871 G A exonic Ttn nonsynonymous SNV NM_011652:c.C30503T:p.P10168L exonic Ttn nonsynonymous SNV uc008kfn.1:c.C30503T:p.P10168L exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000126515:c.C161T:p.P54L 2qC3 NA NA chr2 76684871 TCAxGTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 62 0 0 43.00175 0.592593 0.02 -0.236746 11 16 304 433 60 60 0 0 GG 8.72289 29 0 821 0 KEEP - Ttn YES MNNG_4 chr2 84530791 84530791 G A exonic Zdhhc5 nonsynonymous SNV NM_144887:c.C1198T:p.P400S exonic Zdhhc5 nonsynonymous SNV uc008kiz.2:c.C1198T:p.P400S exonic ENSMUSG00000034075 nonsynonymous SNV ENSMUST00000035840:c.C1198T:p.P400S 2qD NA NA chr2 84530791 TGGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.799738 0.800245 0.999366 58 0 0 37.616356 0.470588 0.02 -0.298043 18 16 478 402 60 60 0 0 GG 5.113235 17 0 470 0 KEEP - Zdhhc5 YES MNNG_4 chr2 84862478 84862478 G A intronic P2rx3 NA NA intronic P2rx3 NA NA intronic ENSMUSG00000027071 NA NA 2qD NA NA chr2 84862478 GGGxGTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161341 0.162467 0.993072 26 0 0 8.830437 0.307692 0.02 -0.113659 9 4 231 104 60 60 0 0 GG 3.308766 11 0 308 0 KEEP - P2rx3 YES MNNG_4 chr2 84898854 84898854 G A exonic Tnks1bp1 nonsynonymous SNV NM_001081260:c.G1367A:p.S456N exonic Tnks1bp1 nonsynonymous SNV uc012byp.1:c.G1367A:p.S456N exonic ENSMUSG00000033955 nonsynonymous SNV ENSMUST00000111605:c.G1367A:p.S456N 2qD NA NA chr2 84898854 GGAxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 128 0 0 64.389439 0.428571 0.02 1.036336 36 27 972 702 60 60 0 0 GG 11.902157 46 1 1241 17 KEEP + Tnks1bp1 YES MNNG_4 chr2 84903136 84903136 C A exonic Tnks1bp1 nonsynonymous SNV NM_001081260:c.C3249A:p.F1083L exonic Tnks1bp1 nonsynonymous SNV uc012byp.1:c.C3249A:p.F1083L exonic ENSMUSG00000033955 nonsynonymous SNV ENSMUST00000048400:c.C1263A:p.F421L 2qD NA NA chr2 84903136 GTTxAGC C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963771 0.963774 0.999997 92 0 0 74.485754 0.588235 0.02 1.150618 21 30 548 752 60 60 0 0 CC 8.721391 29 0 812 0 KEEP + Tnks1bp1 NO MNNG_4 chr2 84910407 84910407 C G exonic Tnks1bp1 nonsynonymous SNV NM_001081260:c.C4549G:p.L1517V exonic Tnks1bp1 nonsynonymous SNV uc012byp.1:c.C4549G:p.L1517V exonic ENSMUSG00000033955 nonsynonymous SNV ENSMUST00000048400:c.C2563G:p.L855V 2qD NA NA chr2 84910407 AGTxTTA C G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 95 0 0 8.341883 0.087719 0.02 1.097715 52 5 1410 133 60 60 0 0 CC 9.325495 31 0 883 0 KEEP + Tnks1bp1 NO MNNG_4 chr2 84979368 84979368 G A UTR3 Aplnr NA NA ncRNA_UTR3 Aplnr NA NA UTR3 ENSMUSG00000044338 NA NA 2qD NA NA chr2 84979368 ACAxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 62 0 0 38.249864 0.625 0.02 -0.210388 9 15 245 380 60 60 0 0 GG 10.226408 34 0 948 0 KEEP + Aplnr YES MNNG_4 chr2 85419763 85419763 G A exonic Olfr996 synonymous SNV NM_146437:c.G366A:p.R122R exonic Olfr996 synonymous SNV uc008kkk.2:c.G366A:p.R122R exonic ENSMUSG00000059990 synonymous SNV ENSMUST00000077075:c.G366A:p.R122R 2qD "Score=0.904719;Name=No.75226,chr2:85440616" NA chr2 85419763 TCGxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 234 0 0 137.563652 0.52381 0.02 2.07957 50 55 1334 1429 60 60 0 0 GG 32.767628 109 0 2974 0 KEEP + Olfr996 YES MNNG_4 chr2 85448316 85448316 G A exonic Olfr1000 synonymous SNV NM_001011695:c.C750T:p.I250I exonic Olfr1000 synonymous SNV uc008kkm.1:c.C750T:p.I250I exonic ENSMUSG00000075215 synonymous SNV ENSMUST00000099921:c.C750T:p.I250I 2qD "Score=0.904719;Name=No.75226,chr2:85409485" NA chr2 85448316 CAGxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 130 2 0 66.059761 0.52 0.02 -0.438392 24 26 661 687 60 60 0 0 GG 18.317663 64 1 1808 8 KEEP - Olfr1000 YES MNNG_4 chr2 85561849 85561849 G A exonic Olfr1009 nonsynonymous SNV NM_146572:c.G286A:p.G96S exonic Olfr1009 nonsynonymous SNV uc008kkr.1:c.G286A:p.G96S exonic ENSMUSG00000043226 nonsynonymous SNV ENSMUST00000055517:c.G286A:p.G96S 2qD NA NA chr2 85561849 CTGxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 155 1 0 105.344331 0.56338 0.02 0.974835 31 40 842 1074 60 60 0 0 GG 19.506105 65 0 1802 0 KEEP + Olfr1009 YES MNNG_4 chr2 86285628 86285628 G A exonic Olfr1065 synonymous SNV NM_146408:c.C510T:p.G170G exonic Olfr1065 synonymous SNV uc008kmj.2:c.C510T:p.G170G exonic ENSMUSG00000075182 synonymous SNV ENSMUST00000099886:c.C510T:p.G170G 2qD "Score=0.946597;Name=No.75238,chr2:86211011" NA chr2 86285628 GGAxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 223 1 100 52.778952 0.468085 0.02 -0.412061 25 22 689 564 37 60 0 0 GG 33.990965 113 0 3203 0 KEEP - Olfr1065 YES MNNG_4 chr2 86763374 86763374 G A exonic Olfr1098 nonsynonymous SNV NM_146845:c.C314T:p.A105V exonic Olfr1098 nonsynonymous SNV uc008knc.1:c.C314T:p.A105V exonic ENSMUSG00000075169 nonsynonymous SNV ENSMUST00000099872:c.C314T:p.A105V 2qD NA NA chr2 86763374 AAGxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 458 0 0 169.923628 0.432927 0.02 3.159488 93 71 2551 1848 60 60 0 0 GG 69.414167 231 0 6376 0 KEEP - Olfr1098 YES MNNG_4 chr2 87330014 87330014 G A exonic Pramel7 nonsynonymous SNV NM_178250:c.C1091T:p.S364F exonic Pramel7 nonsynonymous SNV uc008koa.1:c.C1091T:p.S364F exonic ENSMUSG00000025839 nonsynonymous SNV ENSMUST00000026957:c.C1091T:p.S364F 2qD "Score=0.917642;Name=No.8982,chr10:43873246" NA chr2 87330014 TGAxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 77 0 0 21.906661 0.391304 0.02 -0.20168 14 9 391 243 60 60 0 0 GG 13.537695 45 0 1296 0 KEEP - Pramel7 YES MNNG_4 chr2 88263247 88263247 A T exonic Olfr1181 stoploss SNV NM_001011816:c.T934A:p.X312K exonic Olfr1181 stoploss SNV uc008kpt.1:c.T934A:p.X312K exonic ENSMUSG00000075125 stoploss SNV ENSMUST00000099823:c.T934A:p.X312K 2qD "Score=0.916658;Name=No.75256,chr2:88282145" NA chr2 88263247 ATTxATT A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 76 0 0 11.856225 0.162162 0.02 -0.323331 31 6 761 161 60 60 0 0 AA 9.597283 35 1 932 8 KEEP - Olfr1181 NO MNNG_4 chr2 88951954 88951954 G A exonic Olfr1221 synonymous SNV NM_146902:c.C714T:p.T238T exonic Olfr1221 synonymous SNV uc008kqy.1:c.C714T:p.T238T exonic ENSMUSG00000075102 synonymous SNV ENSMUST00000099795:c.C714T:p.T238T 2qE1 NA NA chr2 88951954 ACAxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 120 0 0 64.717931 0.440678 0.02 1.08001 33 26 918 699 60 60 0 0 GG 15.041366 50 0 1431 0 KEEP - Olfr1221 YES MNNG_4 chr2 89122862 89122862 G A exonic Olfr1229 synonymous SNV NM_001011761:c.C427T:p.L143L exonic Olfr1229 synonymous SNV uc008kre.1:c.C427T:p.L143L exonic ENSMUSG00000075095 synonymous SNV ENSMUST00000099788:c.C427T:p.L143L 2qE1 NA NA chr2 89122862 CTAxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 159 0 0 69.044422 0.466667 0.02 0.973925 32 28 891 737 60 60 0 0 GG 22.555568 75 0 2147 0 KEEP - Olfr1229 YES MNNG_4 chr2 89246830 89246830 G A exonic Olfr1238 synonymous SNV NM_146790:c.C405T:p.N135N exonic Olfr1238 synonymous SNV uc008krk.1:c.C405T:p.N135N exonic ENSMUSG00000075089 synonymous SNV ENSMUST00000099781:c.C405T:p.N135N 2qE1 NA NA chr2 89246830 CCGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 130 0 0 90.508117 0.545455 0.02 0.921402 30 36 808 931 60 60 0 0 GG 15.335059 51 0 1386 0 KEEP - Olfr1238 YES MNNG_4 chr2 89770269 89770269 G A exonic Olfr1258 nonsynonymous SNV NM_146978:c.G302A:p.G101E exonic Olfr1258 nonsynonymous SNV uc008ksd.1:c.G302A:p.G101E exonic ENSMUSG00000049149 nonsynonymous SNV ENSMUST00000060547:c.G302A:p.G101E 2qE1 NA NA chr2 89770269 TTGxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 93 2 0 44.862023 0.404255 0.02 -0.411686 28 19 765 496 60 60 0 0 GG 11.129351 37 0 1035 0 KEEP + Olfr1258 YES MNNG_4 chr2 89818314 89818314 G A exonic Olfr1260 synonymous SNV NM_146981:c.G378A:p.K126K exonic Olfr1260 synonymous SNV uc008ksf.1:c.G378A:p.K126K exonic ENSMUSG00000042894 synonymous SNV ENSMUST00000061830:c.G378A:p.K126K 2qE1 NA NA chr2 89818314 TAAxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 148 0 0 82.175544 0.515625 0.02 1.019078 31 33 840 857 60 60 0 0 GG 18.95053 63 0 1774 0 KEEP + Olfr1260 YES MNNG_4 chr2 91502465 91502465 G A exonic Arhgap1 synonymous SNV NM_001145902:c.G360A:p.K120K exonic Arhgap1 synonymous SNV uc008kwk.2:c.G360A:p.K120K exonic ENSMUSG00000027247 synonymous SNV ENSMUST00000111330:c.G240A:p.K80K 2qE1 NA NA chr2 91502465 TAAxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 148 2 0 70.164256 0.491525 0.02 1.080126 30 29 813 741 60 60 0 0 GG 20.152205 67 0 1868 0 KEEP + Arhgap1 YES MNNG_4 chr2 91785501 91785501 G A exonic Dgkz synonymous SNV NM_001166597:c.C573T:p.S191S exonic Dgkz synonymous SNV uc008kxe.1:c.C573T:p.S191S exonic ENSMUSG00000040479 synonymous SNV ENSMUST00000111303:c.C573T:p.S191S 2qE1 NA NA chr2 91785501 CTGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 118 0 0 87.955237 0.625 0.02 1.009358 21 35 567 874 60 60 0 0 GG 14.673817 49 0 1327 0 KEEP - Dgkz YES MNNG_4 chr2 92215807 92215807 G A exonic Pex16 synonymous SNV NM_145122:c.G87A:p.V29V exonic Pex16 synonymous SNV uc008kxt.2:c.G87A:p.V29V exonic ENSMUSG00000027222 synonymous SNV ENSMUST00000028650:c.G87A:p.V29V 2qE1 NA NA chr2 92215807 TGTxCGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899313 0.899314 0.999999 87 0 0 53.190895 0.536585 0.02 -0.368062 19 22 512 550 60 60 0 0 GG 10.527799 35 0 980 0 KEEP + Pex16 YES MNNG_4 chr2 92453299 92453299 G A splicing Chst1 NA NA splicing Chst1 NA NA splicing ENSMUSG00000027221 NA NA 2qE1 NA NA chr2 92453299 ACAxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 171 1 0 91.933722 0.468354 0.02 0.807482 42 37 1153 980 60 60 0 0 GG 20.452708 68 0 1919 0 KEEP + Chst1 YES MNNG_4 chr2 92454472 92454472 G A exonic Chst1 synonymous SNV NM_023850:c.G1131A:p.Q377Q exonic Chst1 synonymous SNV uc008lfk.2:c.G1131A:p.Q377Q exonic ENSMUSG00000027221 synonymous SNV ENSMUST00000065797:c.G1131A:p.Q377Q 2qE1 NA NA chr2 92454472 CCAxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 142 0 0 66.049217 0.444444 0.02 1.02749 35 28 965 715 60 60 0 0 GG 17.444863 58 0 1609 0 KEEP + Chst1 YES MNNG_4 chr2 93821109 93821109 G A exonic Alkbh3 nonsynonymous SNV NM_026944:c.C794T:p.S265F exonic Alkbh3 nonsynonymous SNV uc008lgn.1:c.C794T:p.S265F exonic ENSMUSG00000040174 nonsynonymous SNV ENSMUST00000040005:c.C794T:p.S265F 2qE1 NA NA chr2 93821109 CTGxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 96 0 0 56.565594 0.594595 0.02 -0.332464 15 22 418 570 60 60 0 0 GG 12.935051 43 0 1220 0 KEEP - Alkbh3 YES MNNG_4 chr3 10016067 10016067 G A exonic Fabp5 nonsynonymous SNV NM_001272098:c.G182A:p.G61E exonic Fabp5 nonsynonymous SNV uc008opg.1:c.G355A:p.E119K exonic ENSMUSG00000027533 nonsynonymous SNV ENSMUST00000029046:c.G355A:p.E119K 3qA1 NA NA chr3 10016067 TAGxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 155 2 0 60.903514 0.431034 0.02 0.982754 33 25 906 662 60 60 0 0 GG 23.160563 77 0 2181 0 KEEP + Fabp5 YES MNNG_4 chr3 100692278 100692278 G A exonic Vtcn1 nonsynonymous SNV NM_178594:c.G637A:p.V213M exonic Vtcn1 nonsynonymous SNV uc008qqx.2:c.G637A:p.V213M exonic ENSMUSG00000051076 nonsynonymous SNV ENSMUST00000054791:c.G637A:p.V213M 3qF2.2 NA NA chr3 100692278 TCTxTGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 158 0 0 66.860737 0.394737 0.02 0.737098 46 30 1232 747 60 60 0 0 GG 23.434597 78 0 2082 0 KEEP + Vtcn1 YES MNNG_4 chr3 101946211 101946211 G T intronic Casq2 NA NA intronic Casq2 NA NA intronic ENSMUSG00000027861 NA NA 3qF2.2 NA NA chr3 101946211 GTGxCCC G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 89 0 0 17.45886 0.307692 0.02 -0.227401 18 8 471 206 60 60 0 0 GG 15.012104 50 0 1316 0 KEEP + Casq2 NO MNNG_4 chr3 10322893 10322893 G A intronic Impa1 NA NA intronic Impa1 NA NA intronic ENSMUSG00000027531 NA NA 3qA1 NA NA chr3 10322893 GAAxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 172 0 0 115.627059 0.529412 0.02 0.949943 40 45 1111 1197 60 60 0 0 GG 19.851675 66 0 1878 0 KEEP - Impa1 YES MNNG_4 chr3 104459642 104459642 C T exonic Slc16a1 synonymous SNV NM_009196:c.C1479T:p.V493V exonic Slc16a1 synonymous SNV uc008qui.1:c.C1479T:p.V493V exonic ENSMUSG00000032902 synonymous SNV ENSMUST00000046212:c.C1479T:p.V493V 3qF2.2 NA NA chr3 104459642 TGTxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 63 2 0 29.894806 0.5 0.02 -0.210431 12 12 338 314 60 60 0 0 CC 8.423371 28 0 805 0 KEEP + Slc16a1 YES MNNG_4 chr3 104749955 104749955 G A exonic Wnt2b synonymous SNV NM_009520:c.C1104T:p.C368C exonic Wnt2b synonymous SNV uc008qut.1:c.C1104T:p.C368C exonic ENSMUSG00000027840 synonymous SNV ENSMUST00000029429:c.C1104T:p.C368C 3qF2.2 NA NA chr3 104749955 TCTxCAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 168 2 0 102.630746 0.538462 0.02 0.816214 36 42 995 1060 60 60 0 0 GG 19.250672 64 0 1807 0 KEEP - Wnt2b YES MNNG_4 chr3 104755873 104755873 C A exonic Wnt2b nonsynonymous SNV NM_009520:c.G635T:p.R212L exonic Wnt2b nonsynonymous SNV uc008qut.1:c.G635T:p.R212L exonic ENSMUSG00000027840 nonsynonymous SNV ENSMUST00000029429:c.G635T:p.R212L 3qF2.2 NA NA chr3 104755873 GCCxGGG C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 97 0 0 48.432372 0.4 0.02 -0.43815 30 20 745 535 60 60 0 0 CC 11.41858 38 0 985 0 KEEP - Wnt2b NO MNNG_4 chr3 104808723 104808723 G A exonic Cttnbp2nl synonymous SNV NM_001163332:c.C762T:p.N254N exonic Cttnbp2nl synonymous SNV uc012cvo.1:c.C360T:p.N120N exonic ENSMUSG00000062127 synonymous SNV ENSMUST00000077548:c.C762T:p.N254N 3qF2.2 NA NA chr3 104808723 TCGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 284 1 0 161.739459 0.448052 0.02 3.14191 85 69 2301 1749 60 60 0 1 GG 30.90917 103 0 2802 0 KEEP - Cttnbp2nl YES MNNG_4 chr3 105789863 105789863 G A exonic Ovgp1 nonsynonymous SNV NM_007696:c.G2033A:p.R678K exonic Ovgp1 nonsynonymous SNV uc008qvq.1:c.G2033A:p.R678K exonic ENSMUSG00000074340 nonsynonymous SNV ENSMUST00000000573:c.G2033A:p.R678K 3qF2.2 NA NA chr3 105789863 CCAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 105 0 0 85.101993 0.592593 0.02 1.123873 22 32 608 857 60 60 0 0 GG 12.331789 41 0 1146 0 KEEP + Ovgp1 YES MNNG_4 chr3 105804275 105804275 G A exonic Pifo nonsynonymous SNV NM_029604:c.C31T:p.P11S exonic 1700027A23Rik nonsynonymous SNV uc008qvr.1:c.C31T:p.P11S exonic ENSMUSG00000010136 nonsynonymous SNV ENSMUST00000066319:c.C31T:p.P11S 3qF2.2 NA NA chr3 105804275 GCGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 107 0 0 49.252945 0.446809 0.02 -0.411769 26 21 724 533 60 60 0 1 GG 12.93523 43 0 1223 0 KEEP - Pifo YES MNNG_4 chr3 108202577 108202577 A C exonic Celsr2 nonsynonymous SNV NM_001004177:c.T5971G:p.F1991V exonic Celsr2 nonsynonymous SNV uc008qyx.1:c.T5971G:p.F1991V exonic ENSMUSG00000068740 nonsynonymous SNV ENSMUST00000090558:c.T5971G:p.F1991V 3qF3 NA NA chr3 108202577 CGAxCCG A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 103 4 0 14.290349 0.175 0.02 -0.359407 33 7 847 190 60 60 0 0 AA 14.365259 48 0 1235 0 KEEP - Celsr2 NO MNNG_4 chr3 113816662 113816662 G A exonic Col11a1 synonymous SNV NM_007729:c.G1920A:p.R640R exonic Col11a1 synonymous SNV uc008rbk.1:c.G1920A:p.R640R exonic ENSMUSG00000027966 synonymous SNV ENSMUST00000029586:c.G1665A:p.R555R 3qF3 NA NA chr3 113816662 CAGxGGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 62 0 0 22.107208 0.391304 0.02 -0.20167 14 9 381 245 60 60 0 0 GG 9.322083 31 0 849 0 KEEP + Col11a1 YES MNNG_4 chr3 122232599 122232599 G A exonic Bcar3 nonsynonymous SNV NM_013867:c.G2384A:p.R795K exonic Bcar3 nonsynonymous SNV uc008req.2:c.G2384A:p.R795K exonic ENSMUSG00000028121 nonsynonymous SNV ENSMUST00000029766:c.G2384A:p.R795K 3qG1 NA NA chr3 122232599 AGAxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 113 0 0 58.805279 0.48 0.02 -0.438311 26 24 711 624 60 60 0 0 GG 15.340975 51 0 1453 0 KEEP + Bcar3 YES MNNG_4 chr3 127265603 127265603 G A exonic 4930422G04Rik nonsynonymous SNV NM_197997:c.G1559A:p.S520N exonic 4930422G04Rik nonsynonymous SNV uc008rhe.1:c.G1559A:p.S520N exonic ENSMUSG00000051278 nonsynonymous SNV ENSMUST00000043108:c.G1559A:p.S520N 3qG2 NA NA chr3 127265603 TGAxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717307 0.717315 0.999988 62 0 0 39.399323 0.516129 0.02 -0.271775 15 16 413 411 60 60 0 0 GG 8.119925 27 0 742 0 KEEP + 4930422G04Rik YES MNNG_4 chr3 129736881 129736881 G A exonic Sec24b nonsynonymous SNV NM_207209:c.C886T:p.P296S exonic Sec24b nonsynonymous SNV uc008riu.1:c.C769T:p.P257S exonic ENSMUSG00000001052 nonsynonymous SNV ENSMUST00000165873:c.C202T:p.P68S 3qG3 NA NA chr3 129736881 GAGxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 163 0 0 95.954719 0.456522 0.02 0.693815 50 42 1309 1035 60 60 0 0 GG 16.54152 55 0 1502 0 KEEP - Sec24b YES MNNG_4 chr3 134931938 134931938 A T exonic Cenpe nonsynonymous SNV NM_173762:c.A6894T:p.K2298N exonic Cenpe nonsynonymous SNV uc008rkz.1:c.A6894T:p.K2298N exonic ENSMUSG00000045328 nonsynonymous SNV ENSMUST00000062893:c.A6894T:p.K2298N 3qG3 NA NA chr3 134931938 TAAxCCT A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423422 0.423478 0.999869 55 0 0 30.693202 0.571429 0.02 -0.184068 9 12 223 312 60 60 0 0 AA 6.316455 21 0 583 0 KEEP + Cenpe NO MNNG_4 chr3 134964622 134964622 A T intronic Bdh2 NA NA intronic Bdh2 NA NA intronic ENSMUSG00000028167 NA NA 3qG3 NA NA chr3 134964622 GTGxGCG A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 92 0 0 8.849292 0.125 0.02 -0.350703 35 5 941 130 60 60 0 0 AA 12.268731 41 0 1109 0 KEEP + Bdh2 NO MNNG_4 chr3 135511942 135511942 T C intronic Slc39a8 NA NA intronic Slc39a8 NA NA intronic ENSMUSG00000053897 NA NA 3qG3 NA NA chr3 135511942 GGCxCAT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 107 0 0 16.103082 0.156863 0.02 1.15028 43 8 1159 219 60 60 0 0 TT 14.438084 48 0 1343 0 KEEP + Slc39a8 NO MNNG_4 chr3 142287516 142287516 C T intronic Gbp2 NA NA intronic Gbp2 NA NA intronic ENSMUSG00000028270 NA NA 3qH1 NA NA chr3 142287516 CGTxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.835716 0.835716 1 115 0 0 42.019391 0.459459 0.02 -0.324421 20 17 558 450 60 60 0 0 CC 21.045599 70 0 1955 0 KEEP + Gbp2 YES MNNG_4 chr3 144471614 144471614 C T exonic Clca2 nonsynonymous SNV NM_030601:c.G1295A:p.G432D exonic Clca2 nonsynonymous SNV uc008rqa.2:c.G1295A:p.G432D exonic ENSMUSG00000028262 nonsynonymous SNV ENSMUST00000029929:c.G1295A:p.G432D 3qH2 "Score=0.949184;Name=No.81918,chr3:144384388" NA chr3 144471614 GCAxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 241 0 0 167.102478 0.560976 0.02 1.923477 54 69 1429 1710 60 60 0 0 CC 30.05796 100 0 2686 0 KEEP - Clca2 YES MNNG_4 chr3 145707809 145707809 C T exonic Wdr63 stopgain SNV NM_172864:c.G2478A:p.W826X exonic Wdr63 stopgain SNV uc008rqw.2:c.G2478A:p.W826X exonic ENSMUSG00000043020 stopgain SNV ENSMUST00000061042:c.G1920A:p.W640X 3qH2 NA NA chr3 145707809 GGTxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 104 1 0 51.108593 0.411765 0.02 1.150163 30 21 833 561 60 60 0 0 CC 11.731585 39 0 1106 0 KEEP - Wdr63 YES MNNG_4 chr3 151180396 151180396 C T exonic Eltd1 synonymous SNV NM_133222:c.C1644T:p.Y548Y exonic Eltd1 synonymous SNV uc008rsj.2:c.C1644T:p.Y548Y exonic ENSMUSG00000039167 synonymous SNV ENSMUST00000046977:c.C1644T:p.Y548Y 3qH3 NA NA chr3 151180396 TTAxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 292 0 0 124.23944 0.406015 0.02 2.028834 79 54 2104 1375 60 60 0 0 CC 34.581952 115 0 3208 0 KEEP + Eltd1 YES MNNG_4 chr3 152033386 152033386 A T intronic Usp33 NA NA exonic Vdu1 nonsynonymous SNV uc008rth.1:c.A888T:p.K296N UTR3 ENSMUSG00000025437 NA NA 3qH3 NA NA chr3 152033386 TAAxCGG A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 64 0 0 7.427139 0.142857 0.02 -0.245448 24 4 621 105 60 60 0 0 AA 8.720244 29 0 780 0 KEEP + Usp33 NO MNNG_4 chr3 152090518 152090518 C T exonic Zzz3 nonsynonymous SNV NM_001080755:c.C248T:p.A83V exonic Zzz3 nonsynonymous SNV uc008rtn.1:c.C248T:p.A83V exonic ENSMUSG00000039068 nonsynonymous SNV ENSMUST00000089982:c.C248T:p.A83V 3qH3 "Score=0.89481;Name=No.85537,chrX:133662776" NA chr3 152090518 GCGxTCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 89 1 0 40.595997 0.404762 0.02 -0.368258 25 17 693 448 60 60 0 0 CC 12.333205 41 0 1160 0 KEEP + Zzz3 YES MNNG_4 chr3 152112033 152112033 C T exonic Zzz3 nonsynonymous SNV NM_001080755:c.C1870T:p.L624F exonic Zzz3 nonsynonymous SNV uc012czm.1:c.C379T:p.L127F exonic ENSMUSG00000039068 nonsynonymous SNV ENSMUST00000106105:c.C379T:p.L127F 3qH3 NA NA chr3 152112033 TCCxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457697 0.457757 0.999869 51 0 0 34.432197 0.590909 0.02 -0.192898 9 13 252 347 60 60 0 0 CC 6.316423 21 0 589 0 KEEP + Zzz3 YES MNNG_4 chr3 15332107 15332107 G A intronic Gm9733 NA NA intronic Gm9733 NA NA intronic ENSMUSG00000078783 NA NA 3qA1 "Score=0.971805;Name=No.81397,chr3:15459124" NA chr3 15332107 ATAxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 162 0 0 45.218632 0.307692 0.02 0.87746 45 20 1237 531 60 60 0 0 GG 21.658347 72 0 2049 0 KEEP - Gm9733 YES MNNG_4 chr3 28626026 28626026 C T exonic Slc2a2 synonymous SNV NM_031197:c.C1290T:p.P430P exonic Slc2a2 synonymous SNV uc008oub.2:c.C246T:p.P82P exonic ENSMUSG00000027690 synonymous SNV ENSMUST00000029240:c.C1290T:p.P430P 3qA3 NA NA chr3 28626026 ACCxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 99 2 0 35.303378 0.355556 0.02 -0.403043 29 16 768 404 60 60 0 0 CC 11.667413 39 0 1059 0 KEEP + Slc2a2 YES MNNG_4 chr3 30996948 30996948 G A exonic Skil synonymous SNV NM_001039090:c.G696A:p.R232R exonic Skil synonymous SNV uc008ovt.1:c.G696A:p.R232R exonic ENSMUSG00000027660 synonymous SNV ENSMUST00000118204:c.G696A:p.R232R 3qA3 NA NA chr3 30996948 GCGxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 136 0 0 63.458644 0.435484 0.02 0.957215 35 27 929 690 60 60 0 0 GG 18.647385 62 0 1716 0 KEEP + Skil YES MNNG_4 chr3 32626564 32626564 A C exonic Mrpl47 nonsynonymous SNV NM_029017:c.T711G:p.H237Q exonic Mrpl47 nonsynonymous SNV uc008owp.2:c.T711G:p.H237Q exonic ENSMUSG00000037531 nonsynonymous SNV ENSMUST00000043966:c.T711G:p.H237Q 3qA3 "Score=0.900497;Name=No.77699,chr2:150132128" NA chr3 32626564 TGCxTGG A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 95 1 0 7.280034 0.095238 0.02 -0.368177 38 4 978 111 60 37 0 0 AA 13.822266 46 0 1231 0 KEEP - Mrpl47 NO MNNG_4 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 64 2 0 21.679929 0.30303 0.02 -0.315624 23 10 628 257 60 37 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 YES MNNG_4 chr3 40637894 40637894 G A exonic Mfsd8 synonymous SNV NM_028140:c.C528T:p.C176C exonic Mfsd8 synonymous SNV uc008pbp.1:c.C528T:p.C176C exonic ENSMUSG00000025759 synonymous SNV ENSMUST00000026859:c.C528T:p.C176C 3qB NA NA chr3 40637894 TTGxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 155 0 0 67.219163 0.490909 0.02 1.017805 28 27 759 709 60 60 0 0 GG 23.745441 79 0 2176 0 KEEP - Mfsd8 YES MNNG_4 chr3 55823273 55823273 T C intronic Nbea NA NA intronic Nbea NA NA intronic ENSMUSG00000027799 NA NA 3qC NA NA chr3 55823273 TTGxTGT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 105 0 0 41.355195 0.361702 0.02 -0.412027 30 17 768 466 60 60 0 0 TT 14.429597 48 0 1268 0 KEEP - Nbea NO MNNG_4 chr3 62281182 62281182 G A intronic Dhx36 NA NA intronic Dhx36 NA NA intronic ENSMUSG00000027770 NA NA 3qE1 NA NA chr3 62281182 AAAxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 190 3 0 131.207935 0.595238 0.02 0.852108 34 50 937 1320 60 60 0 0 GG 22.85162 76 0 2145 0 KEEP - Dhx36 YES MNNG_4 chr3 63502497 63502497 C A exonic Plch1 nonsynonymous SNV NM_183191:c.G3907T:p.A1303S exonic Plch1 nonsynonymous SNV uc008pjt.1:c.G712T:p.A238S exonic ENSMUSG00000036834 nonsynonymous SNV ENSMUST00000048134:c.G3781T:p.A1261S 3qE1 NA NA chr3 63502497 AAGxATC C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 90 0 0 43.984519 0.339286 0.02 1.097544 37 19 1036 505 60 60 0 0 CC 9.024143 30 0 846 0 KEEP - Plch1 NO MNNG_4 chr3 63748621 63748621 G A exonic Slc33a1 nonsynonymous SNV NM_001272035:c.C1352T:p.T451I exonic Slc33a1 nonsynonymous SNV uc008pkc.1:c.C1352T:p.T451I exonic ENSMUSG00000027822 nonsynonymous SNV ENSMUST00000029402:c.C1352T:p.T451I 3qE1 NA NA chr3 63748621 AGGxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 142 0 0 103.567726 0.569444 0.02 0.868837 31 41 816 1054 60 60 0 0 GG 16.541872 55 0 1508 0 KEEP - Slc33a1 YES MNNG_4 chr3 64219191 64219191 G A intergenic "Vmn2r4(dist=5212),Vmn2r5(dist=75552)" NA NA intergenic "Vmn2r4(dist=5212),Vmn2r5(dist=75552)" NA NA intergenic "ENSMUSG00000092049(dist=5212),ENSMUSG00000068999(dist=75552)" NA NA 3qE1 "Score=0.951111;Name=No.81594,chr3:64518136" NA chr3 64219191 CCAxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 213 0 0 99.806711 0.45977 0.02 0.825792 47 40 1302 1068 60 60 0 0 GG 29.774638 99 0 2820 0 KEEP NA Vmn2r4 YES MNNG_4 chr3 65070478 65070478 G A intronic Kcnab1 NA NA ncRNA_intronic AK039238 NA NA intronic ENSMUSG00000027827 NA NA 3qE1 NA NA chr3 65070478 ATGxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227586 0.229173 0.993072 31 0 0 17.737301 0.466667 0.02 -0.131516 8 7 216 189 60 60 0 0 GG 3.308527 11 0 305 0 KEEP + Kcnab1 YES MNNG_4 chr3 7450119 7450119 C T intergenic "Pkia(dist=4754),Zc2hc1a(dist=53307)" NA NA intergenic "Pkia(dist=4754),Fam164a(dist=53307)" NA NA intergenic "ENSMUSG00000027499(dist=4753),ENSMUSG00000088484(dist=51785)" NA NA 3qA1 NA NA chr3 7450119 TCTxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 121 2 0 45.755295 0.486486 0.02 -0.32431 19 18 512 483 60 60 0 0 CC 19.547508 65 0 1834 0 KEEP NA Pkia YES MNNG_4 chr3 7526398 7526398 A T exonic Zc2hc1a nonsynonymous SNV NM_173181:c.A482T:p.K161M exonic Fam164a nonsynonymous SNV uc008oog.1:c.A482T:p.K161M exonic ENSMUSG00000043542 nonsynonymous SNV ENSMUST00000051064:c.A482T:p.K161M 3qA1 NA NA chr3 7526398 GAAxGCC A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.91817 0.918171 0.999999 91 0 0 12.875878 0.159091 0.02 -0.385769 37 7 999 179 60 60 0 0 AA 10.528114 35 0 983 0 KEEP + Zc2hc1a NO MNNG_4 chr3 79509587 79509587 G A exonic Rxfp1 nonsynonymous SNV NM_212452:c.C97T:p.P33S exonic Rxfp1 nonsynonymous SNV uc008pnv.1:c.C97T:p.P33S exonic ENSMUSG00000034009 nonsynonymous SNV ENSMUST00000078527:c.C97T:p.P33S 3qE3 NA NA chr3 79509587 AGGxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717217 0.717315 0.999863 55 0 0 37.32203 0.483871 0.02 -0.271765 16 15 443 395 60 60 0 0 GG 5.995918 20 0 543 0 KEEP - Rxfp1 YES MNNG_4 chr3 83735726 83735726 G A exonic D930015E06Rik nonsynonymous SNV NM_172681:c.C1838T:p.T613I exonic D930015E06Rik nonsynonymous SNV uc008ppo.1:c.C1061T:p.T354I exonic ENSMUSG00000033767 nonsynonymous SNV ENSMUST00000047595:c.C1838T:p.T613I 3qF1 NA NA chr3 83735726 GGAxTCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.996724 0.996724 1 165 0 0 83.101292 0.5 0.02 0.886479 35 35 925 875 60 60 0 0 GG 21.040649 70 0 1874 0 KEEP - D930015E06Rik YES MNNG_4 chr3 86176003 86176003 G A exonic Lrba nonsynonymous SNV NM_001077687:c.G5315A:p.S1772N exonic Lrba nonsynonymous SNV uc008prg.1:c.G5315A:p.S1772N exonic ENSMUSG00000028080 nonsynonymous SNV ENSMUST00000107635:c.G5315A:p.S1772N 3qF1 NA NA chr3 86176003 GAAxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196294 0.196312 0.999909 44 0 0 8.67142 0.285714 0.02 -0.122742 10 4 269 104 60 60 0 0 GG 7.216879 24 0 658 0 KEEP + Lrba YES MNNG_4 chr3 87535703 87535703 G A splicing Arhgef11(NM_001003912:exon34:c.3423-1G>A) NA NA splicing "Arhgef11(uc008psl.1:exon34:c.3336-1G>A,uc008psm.1:exon34:c.3423-1G>A,uc008psn.1:exon28:c.2865-1G>A,uc012cri.1:exon25:c.1473-1G>A,uc008pso.1:exon4:c.123-1G>A)" NA NA splicing "ENSMUSG00000041977(ENSMUST00000039476:exon34:c.3423-1G>A,ENSMUST00000129113:exon34:c.3336-1G>A,ENSMUST00000152006:exon33:c.3296-1G>A,ENSMUST00000090982:exon34:c.438-1G>A)" NA NA 3qF1 NA NA chr3 87535703 TCAxGGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 57 0 0 31.791713 0.571429 0.02 -0.184135 9 12 253 323 60 60 0 0 GG 6.918752 23 0 659 0 KEEP + Arhgef11 YES MNNG_4 chr3 87735769 87735769 T C exonic Isg20l2 nonsynonymous SNV NM_177663:c.T364C:p.F122L exonic Isg20l2 nonsynonymous SNV uc008ptj.1:c.T364C:p.F122L exonic ENSMUSG00000048039 nonsynonymous SNV ENSMUST00000055984:c.T364C:p.F122L 3qF1 "Score=0.941803;Name=No.83098,chr6:128925684" NA chr3 87735769 GAGxTTC T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 129 0 1 10.082995 0.095238 0.02 1.045213 57 6 1449 158 60 21 0 0 TT 17.125565 57 0 1490 0 KEEP + Isg20l2 NO MNNG_4 chr3 88137150 88137150 G A exonic Tmem79 nonsynonymous SNV NM_024246:c.C412T:p.P138S exonic Tmem79 nonsynonymous SNV uc008puq.1:c.C412T:p.P138S exonic ENSMUSG00000001420 nonsynonymous SNV ENSMUST00000001456:c.C412T:p.P138S 3qF1 NA NA chr3 88137150 GTGxCTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 77 0 0 49.414114 0.526316 0.02 -0.333104 18 20 491 513 60 60 0 0 GG 8.722647 29 0 806 0 KEEP - Tmem79 YES MNNG_4 chr3 88290259 88290259 G A intronic Lmna NA NA intronic Lmna NA NA intronic ENSMUSG00000028063 NA NA 3qF1 NA NA chr3 88290259 AGGxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.519729 0.522161 0.995343 39 0 0 28.417139 0.5 0.02 -0.209455 12 12 334 300 60 60 0 0 GG 4.211026 14 0 397 0 KEEP - Lmna YES MNNG_4 chr3 88306644 88306644 G A intronic Lmna NA NA intronic Lmna NA NA intronic ENSMUSG00000028063 NA NA 3qF1 NA NA chr3 88306644 CTGxTGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 113 0 0 48.408381 0.372881 0.02 0.984236 37 22 981 549 60 60 0 0 GG 12.920185 43 0 1159 0 KEEP - Lmna YES MNNG_4 chr3 88576478 88576478 G A UTR5 Syt11 NA NA UTR5 Syt11 NA NA UTR5 ENSMUSG00000068923 NA NA 3qF1 "Score=0.989223;Name=No.81677,chr3:88630610" NA chr3 88576478 AGAxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 65 0 6 23.747549 0.384615 0.02 -0.227914 16 10 421 265 60 60 0 0 GG 9.024979 30 0 861 0 KEEP - Syt11 YES MNNG_4 chr3 89013184 89013184 G A exonic Mtx1 nonsynonymous SNV NM_001161824:c.C1328T:p.A443V exonic Mtx1 nonsynonymous SNV uc008pyf.2:c.C1445T:p.A482V exonic ENSMUSG00000064068 nonsynonymous SNV ENSMUST00000118964:c.C1238T:p.A413V 3qF1 NA NA chr3 89013184 CGAxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 171 0 0 60.689166 0.333333 0.02 0.789851 54 27 1469 702 60 60 0 0 GG 18.871599 63 0 1698 0 KEEP - Mtx1 YES MNNG_4 chr3 89021749 89021749 G A exonic Thbs3 synonymous SNV NM_013691:c.G429A:p.V143V exonic Thbs3 synonymous SNV uc008pyg.2:c.G429A:p.V143V exonic ENSMUSG00000028047 synonymous SNV ENSMUST00000142051:c.G222A:p.V74V 3qF1 NA NA chr3 89021749 TGTxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 86 0 0 15.435515 0.166667 0.02 -0.420562 40 8 1092 210 60 60 0 0 GG 9.023778 30 0 847 0 KEEP + Thbs3 YES MNNG_4 chr3 89143862 89143862 G A exonic Adam15 nonsynonymous SNV NM_009614:c.C2419T:p.P807S exonic Adam15 nonsynonymous SNV uc008pyw.1:c.C2419T:p.P807S exonic ENSMUSG00000028041 nonsynonymous SNV ENSMUST00000107446:c.C1318T:p.P440S 3qF1 NA NA chr3 89143862 GGGxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 169 0 0 110.912765 0.494624 0.02 0.676324 47 46 1268 1170 60 60 0 0 GG 18.646175 62 0 1689 0 KEEP - Adam15 YES MNNG_4 chr3 89151006 89151006 G A intronic Adam15 NA NA UTR3 4731419I09Rik NA NA ncRNA_exonic ENSMUSG00000091513 NA NA 3qF1 NA NA chr3 89151006 AGGxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 212 0 0 106.289918 0.405405 0.02 2.010899 66 45 1828 1174 60 60 0 0 GG 25.367852 85 0 2292 0 KEEP - Adam15 YES MNNG_4 chr3 89161553 89161553 G A intronic Dcst1 NA NA UTR3 Dcst1 NA NA intronic ENSMUSG00000042672 NA NA 3qF1 NA NA chr3 89161553 GAAxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.98954 0.989542 0.999997 101 0 0 94.820014 0.6 0.02 1.062523 24 36 665 952 60 60 0 0 GG 9.627061 32 0 928 0 KEEP - Dcst1 YES MNNG_4 chr3 89168909 89168909 G A intronic Dcst1 NA NA intronic Dcst1 NA NA intronic ENSMUSG00000042672 NA NA 3qF1 NA NA chr3 89168909 GAGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 133 0 0 101.318324 0.629032 0.02 0.956506 23 39 634 1005 60 60 0 0 GG 14.428306 48 0 1294 0 KEEP - Dcst1 YES MNNG_4 chr3 89566413 89566413 G A exonic Chrnb2 synonymous SNV NM_009602:c.C273T:p.R91R exonic Chrnb2 synonymous SNV uc008qaa.2:c.C273T:p.R91R exonic ENSMUSG00000027950 synonymous SNV ENSMUST00000029562:c.C273T:p.R91R 3qF1 NA NA chr3 89566413 GAGxCGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 62 2 0 44.691662 0.68 0.02 -0.219163 8 17 220 434 60 60 0 0 GG 8.421655 28 0 772 0 KEEP - Chrnb2 YES MNNG_4 chr3 89749085 89749085 G A exonic Atp8b2 nonsynonymous SNV NM_001081182:c.C2528T:p.S843F exonic Atp8b2 nonsynonymous SNV uc008qah.1:c.C1670T:p.S557F exonic ENSMUSG00000060671 nonsynonymous SNV ENSMUST00000069805:c.C2585T:p.S862F 3qF1 NA NA chr3 89749085 TCGxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.38494 0.387407 0.993634 38 0 0 32.074131 0.6 0.02 -0.175364 8 12 223 322 60 60 0 0 GG 3.539951 12 0 298 0 KEEP - Atp8b2 YES MNNG_4 chr3 90061179 90061179 G A intronic Crtc2 NA NA intronic Crtc2 NA NA intronic ENSMUSG00000027936 NA NA 3qF1 NA NA chr3 90061179 TCAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 263 2 0 111.322234 0.4 0.02 2.18658 69 46 1905 1230 60 60 0 0 GG 35.772158 119 0 3335 0 KEEP + Crtc2 YES MNNG_4 chr3 90328354 90328354 G A exonic S100a13 nonsynonymous SNV NM_009113:c.G419A:p.R140K exonic S100a13 nonsynonymous SNV uc008qcu.1:c.G233A:p.R78K exonic ENSMUSG00000042312 nonsynonymous SNV ENSMUST00000107338:c.G233A:p.R78K 3qF1 NA NA chr3 90328354 GGAxACT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260941 0.260965 0.999909 44 0 0 23.327957 0.5625 0.02 -0.14028 7 9 191 238 60 60 0 0 GG 7.219988 24 0 689 0 KEEP + S100a13 YES MNNG_4 chr3 92260846 92260846 G A exonic Sprr3 synonymous SNV NM_001204427:c.C612T:p.D204D exonic Sprr3 synonymous SNV uc008qec.1:c.C612T:p.D204D exonic ENSMUSG00000045539 synonymous SNV ENSMUST00000058142:c.C612T:p.D204D 3qF1 NA NA chr3 92260846 CTGxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 155 1 0 104.587569 0.567568 0.02 0.950235 32 42 831 1065 60 60 0 0 GG 18.343798 61 0 1654 0 KEEP - Sprr3 YES MNNG_4 chr3 93005661 93005661 G A exonic Flg2 nonsynonymous SNV NM_001013804:c.G1073A:p.G358D exonic Flg2 nonsynonymous SNV uc008qfe.1:c.G1073A:p.G358D exonic ENSMUSG00000049133 nonsynonymous SNV ENSMUST00000098884:c.G1073A:p.G358D 3qF2.1 NA NA chr3 93005661 GTGxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 81 4 0 33.455231 0.428571 0.02 -0.306625 20 15 531 367 60 60 0 0 GG 11.125978 37 0 1004 0 KEEP + Flg2 YES MNNG_4 chr3 93018497 93018497 G A exonic Flg2 nonsynonymous SNV NM_001013804:c.G4051A:p.E1351K exonic Flg2 nonsynonymous SNV uc008qfe.1:c.G4045A:p.E1349K exonic ENSMUSG00000049133 nonsynonymous SNV ENSMUST00000098884:c.G4051A:p.E1351K 3qF2.1 "Score=0.976439;Name=No.81784,chr3:93007408" NA chr3 93018497 TCTxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 214 2 0 29.475621 0.382353 0.02 -0.298103 21 13 588 331 60 60 0 0 GG 43.307664 144 0 4123 0 KEEP + Flg2 YES MNNG_4 chr3 94229884 94229884 G A exonic Tdrkh nonsynonymous SNV NM_028307:c.G733A:p.G245R exonic Tdrkh nonsynonymous SNV uc008qge.1:c.G733A:p.G245R exonic ENSMUSG00000041912 nonsynonymous SNV ENSMUST00000045245:c.G733A:p.G245R 3qF2.1 NA NA chr3 94229884 ATGxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 0.999999 73 0 0 18.262998 0.266667 0.02 -0.263053 22 8 602 220 60 60 0 0 GG 10.827636 36 0 997 0 KEEP + Tdrkh YES MNNG_4 chr3 94761034 94761034 G A exonic Rfx5 nonsynonymous SNV NM_017395:c.G568A:p.E190K exonic Rfx5 nonsynonymous SNV uc008qhj.1:c.G58A:p.E20K exonic ENSMUSG00000005774 nonsynonymous SNV ENSMUST00000029772:c.G568A:p.E190K 3qF2.1 NA NA chr3 94761034 CCAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.98416 0.984161 0.999999 106 0 0 76.468446 0.517241 0.02 1.186926 28 30 765 796 60 60 0 0 GG 10.529329 35 0 1009 0 KEEP + Rfx5 YES MNNG_4 chr3 95130345 95130345 G A intronic Setdb1 NA NA intronic Setdb1 NA NA intronic ENSMUSG00000015697 NA NA 3qF2.1 NA NA chr3 95130345 AAGxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 138 0 0 64.902392 0.464286 0.02 1.009023 30 26 828 693 60 60 0 0 GG 20.150356 67 0 1891 0 KEEP - Setdb1 YES MNNG_4 chr3 96000793 96000793 G A exonic Bola1 nonsynonymous SNV NM_026975:c.C407T:p.T136I exonic Bola1 nonsynonymous SNV uc008qmg.1:c.C407T:p.T136I exonic ENSMUSG00000015943 nonsynonymous SNV ENSMUST00000016087:c.C407T:p.T136I 3qF2.1 NA NA chr3 96000793 GAGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 101 0 0 35.866145 0.333333 0.02 -0.420733 32 16 853 415 60 60 0 0 GG 12.330961 41 0 1132 0 KEEP - Bola1 YES MNNG_4 chr3 97965950 97965950 T A exonic Adam30 nonsynonymous SNV NM_027665:c.T1175A:p.F392Y exonic Adam30 nonsynonymous SNV uc008qpp.1:c.T1175A:p.F392Y exonic ENSMUSG00000043468 nonsynonymous SNV ENSMUST00000050342:c.T1175A:p.F392Y 3qF2.2 NA NA chr3 97965950 ACTxCCC T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.549786 0.552887 0.994391 40 0 0 43.289093 0.68 0.02 -0.219125 8 17 213 420 60 60 0 0 TT 3.910225 13 0 361 0 KEEP + Adam30 NO MNNG_4 chr3 99831594 99831594 G A exonic Spag17 stopgain SNV NM_028892:c.G2192A:p.W731X exonic Spag17 stopgain SNV uc012cus.1:c.G2192A:p.W731X exonic ENSMUSG00000027867 stopgain SNV ENSMUST00000029461:c.G2192A:p.W731X 3qF2.2 NA NA chr3 99831594 TGTxGCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 65 0 0 20.436599 0.3 0.02 -0.263009 21 9 563 241 60 60 0 1 GG 9.324801 31 0 871 0 KEEP + Spag17 YES MNNG_4 chr4 100639566 100639566 A C exonic Cachd1 nonsynonymous SNV NM_198037:c.A1598C:p.H533P exonic Cachd1 nonsynonymous SNV uc008tvg.1:c.A1598C:p.H533P exonic ENSMUSG00000028532 nonsynonymous SNV ENSMUST00000030257:c.A1598C:p.H533P 4qC6 NA NA chr4 100639566 TGCxTCC A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 124 0 0 32.011203 0.28 0.02 -0.438146 36 14 919 382 60 60 0 0 AA 15.036756 50 0 1349 0 KEEP + Cachd1 NO MNNG_4 chr4 100847686 100847686 G A exonic Jak1 nonsynonymous SNV NM_146145:c.C1327T:p.P443S exonic Jak1 nonsynonymous SNV uc008tvk.1:c.C1327T:p.P443S exonic ENSMUSG00000028530 nonsynonymous SNV ENSMUST00000102781:c.C1327T:p.P443S 4qC6 NA NA chr4 100847686 TTGxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120422 0.120436 0.999879 38 0 0 21.913666 0.727273 0.02 -0.096428 3 8 77 209 60 60 0 0 GG 6.581126 22 0 581 0 KEEP - Jak1 YES MNNG_4 chr4 100847727 100847727 G A exonic Jak1 nonsynonymous SNV NM_146145:c.C1286T:p.P429L exonic Jak1 nonsynonymous SNV uc008tvk.1:c.C1286T:p.P429L exonic ENSMUSG00000028530 nonsynonymous SNV ENSMUST00000102781:c.C1286T:p.P429L 4qC6 NA NA chr4 100847727 GGGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.999859 34 0 0 18.982463 0.7 0.02 -0.08767 3 7 81 183 60 60 0 0 GG 5.350678 18 0 467 0 KEEP - Jak1 YES MNNG_4 chr4 107017821 107017821 G A intronic Yipf1 NA NA intronic Yipf1 NA NA intronic ENSMUSG00000057375 NA NA 4qC7 NA NA chr4 107017821 TTGxTAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 139 0 0 114.581632 0.741379 0.02 0.991608 15 43 398 1085 60 60 0 0 GG 19.528671 65 0 1725 0 KEEP + Yipf1 YES MNNG_4 chr4 108231373 108231373 G A exonic Zcchc11 nonsynonymous SNV NM_175472:c.G4918A:p.G1640R exonic Zcchc11 nonsynonymous SNV uc012dif.1:c.G3199A:p.G1067R exonic ENSMUSG00000034610 nonsynonymous SNV ENSMUST00000128042:c.G301A:p.G101R 4qC7 NA NA chr4 108231373 CGAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 93 0 0 44.434962 0.548387 0.02 -0.271816 14 17 391 456 60 60 0 0 GG 14.439334 48 0 1364 0 KEEP + Zcchc11 YES MNNG_4 chr4 111702039 111702039 G A exonic Skint1 nonsynonymous SNV NM_001102662:c.G1076A:p.R359K exonic Skint1 nonsynonymous SNV uc008udq.1:c.G1076A:p.R359K exonic ENSMUSG00000089773 nonsynonymous SNV ENSMUST00000162158:c.G1076A:p.R359K 4qD1 NA NA chr4 111702039 AGAxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 59 0 0 28.023383 0.5 0.02 -0.192862 11 11 299 294 60 60 0 0 GG 7.521 25 0 721 0 KEEP + Skint1 YES MNNG_4 chr4 11294338 11294338 G A intronic Esrp1 NA NA intronic Esrp1 NA NA intronic ENSMUSG00000040728 NA NA 4qA1 NA NA chr4 11294338 GGGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 98 3 0 45.414377 0.5 0.02 -0.333123 19 19 515 478 60 60 0 0 GG 15.034333 50 0 1344 0 KEEP - Esrp1 YES MNNG_4 chr4 114598638 114598638 G A upstream Foxe3 NA NA upstream Foxe3 NA NA UTR5 ENSMUSG00000044518 NA NA 4qD1 NA NA chr4 114598638 TGGxGGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053834 0.054137 0.994391 30 0 0 10.398983 0.5 0.02 -0.07015 4 4 112 109 60 60 0 0 GG 3.908638 13 0 353 0 KEEP - Foxe3 YES MNNG_4 chr4 115439130 115439130 A G intronic Efcab14 NA NA intronic 4732418C07Rik NA NA intronic ENSMUSG00000034210 NA NA 4qD1 NA NA chr4 115439130 ATGxTGG A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054132 0.054137 0.999909 37 0 0 13.285034 0.625 0.02 -0.070133 3 5 77 132 60 60 0 0 AA 7.217081 24 0 647 0 KEEP + Efcab14 NO MNNG_4 chr4 118931507 118931507 G A exonic Cldn19 nonsynonymous SNV NM_001038590:c.G568A:p.E190K exonic Cldn19 nonsynonymous SNV uc008uls.1:c.G568A:p.E190K exonic ENSMUSG00000066058 nonsynonymous SNV ENSMUST00000084309:c.G568A:p.E190K 4qD2.1 NA NA chr4 118931507 CCGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 49 0 0 36.893697 0.583333 0.02 -0.219199 10 14 278 373 60 60 0 0 GG 6.316672 21 0 594 0 KEEP + Cldn19 YES MNNG_4 chr4 118932379 118932379 G A UTR3 Cldn19 NA NA UTR3 Cldn19 NA NA UTR3 ENSMUSG00000066058 NA NA 4qD2.1 NA NA chr4 118932379 AGGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 242 1 0 131.442637 0.557895 0.02 0.667364 42 53 1109 1345 60 60 0 0 GG 36.00344 120 0 3146 0 KEEP + Cldn19 YES MNNG_4 chr4 120371048 120371048 T C intronic Kcnq4 NA NA intronic Kcnq4 NA NA intronic ENSMUSG00000028631 NA NA 4qD2.2 NA NA chr4 120371048 CAGxGCT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 215 0 0 96.249254 0.58209 0.02 1.010691 28 39 712 975 60 60 0 0 TT 36.381742 121 0 3231 0 KEEP - Kcnq4 NO MNNG_4 chr4 123059681 123059681 G A exonic Macf1 nonsynonymous SNV NM_001199137:c.C12344T:p.T4115I exonic Macf1 nonsynonymous SNV uc008upk.2:c.C848T:p.T283I exonic ENSMUSG00000028649 nonsynonymous SNV ENSMUST00000106213:c.C14057T:p.T4686I 4qD2.2 NA NA chr4 123059681 TCGxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 91 0 0 85.648925 0.727273 0.02 -0.385675 12 32 313 816 60 60 0 1 GG 13.228483 44 0 1187 0 KEEP - Macf1 YES MNNG_4 chr4 123152458 123152458 G A exonic Macf1 nonsynonymous SNV NM_001199136:c.C5752T:p.L1918F exonic Macf1 nonsynonymous SNV uc008upr.2:c.C5752T:p.L1918F exonic ENSMUSG00000028649 nonsynonymous SNV ENSMUST00000106213:c.C1057T:p.L353F 4qD2.2 NA NA chr4 123152458 CAAxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 85 0 0 73.225688 0.742857 0.02 -0.306871 9 26 247 695 60 60 0 0 GG 12.334248 41 0 1179 0 KEEP - Macf1 YES MNNG_4 chr4 124742143 124742143 G A exonic Dnali1 nonsynonymous SNV NM_175223:c.C223T:p.P75S exonic Dnali1 nonsynonymous SNV uc008urp.1:c.C223T:p.P75S exonic ENSMUSG00000042707 nonsynonymous SNV ENSMUST00000036383:c.C223T:p.P75S 4qD2.2 NA NA chr4 124742143 TTGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 60 0 0 47.522983 0.62069 0.02 -0.254202 11 18 288 473 60 60 0 0 GG 8.022143 27 0 704 0 KEEP - Dnali1 YES MNNG_4 chr4 126733688 126733688 C T intronic Zmym1 NA NA intronic Zmym1 NA NA ncRNA_exonic ENSMUSG00000084149 NA NA 4qD2.2 NA NA chr4 126733688 TCAxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 493 4 3 99.044715 0.328467 0.02 1.783373 92 45 2393 1152 60 60 0 0 CC 87.359181 296 1 8001 14 KEEP - Zmym1 YES MNNG_4 chr4 128046294 128046294 C T exonic Csmd2 synonymous SNV NM_001281955:c.C2028T:p.F676F ncRNA_exonic mKIAA1884 NA NA intergenic "ENSMUSG00000085717(dist=106060),ENSMUSG00000028804(dist=25925)" NA NA 4qD2.2 NA NA chr4 128046294 TTTxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 95 0 0 34.107438 0.424242 0.02 -0.289337 19 14 518 372 60 60 0 0 CC 17.129845 57 0 1568 0 KEEP + Csmd2 YES MNNG_4 chr4 128857439 128857439 C T exonic S100pbp nonsynonymous SNV NM_029036:c.G866A:p.R289K exonic S100pbp nonsynonymous SNV uc008uwf.1:c.G866A:p.R289K exonic ENSMUSG00000040928 nonsynonymous SNV ENSMUST00000049081:c.G866A:p.R289K 4qD2.2 NA NA chr4 128857439 GTTxTAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 91 0 0 36.271438 0.428571 0.02 -0.31565 20 15 559 395 60 60 0 0 CC 11.732211 39 0 1116 0 KEEP - S100pbp YES MNNG_4 chr4 129270763 129270763 G A intronic Eif3i NA NA intronic Eif3i NA NA intronic ENSMUSG00000028798 NA NA 4qD2.2 NA NA chr4 129270763 TGAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.750405 0.760887 0.986224 67 0 0 55.641214 0.625 0.02 -0.280603 12 20 333 553 60 60 0 0 GG 6.60567 22 0 605 0 KEEP - Eif3i YES MNNG_4 chr4 129399840 129399840 C T intronic Khdrbs1 NA NA intronic Khdrbs1 NA NA intronic ENSMUSG00000028790 NA NA 4qD2.2 NA NA chr4 129399840 ACCxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 35 0 0 11.470035 0.3125 0.02 -0.149056 11 5 299 134 60 60 0 0 CC 5.113087 17 0 469 0 KEEP - Khdrbs1 YES MNNG_4 chr4 129754496 129754496 G A exonic Col16a1 synonymous SNV NM_028266:c.G2841A:p.K947K exonic Col16a1 synonymous SNV uc008uyu.2:c.G1155A:p.K385K exonic ENSMUSG00000040690 synonymous SNV ENSMUST00000143577:c.G1896A:p.K632K 4qD2.2 NA NA chr4 129754496 CAAxGTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 80 0 0 32.392942 0.571429 0.02 -0.184141 9 12 249 329 60 60 0 0 GG 11.730406 39 0 1092 0 KEEP + Col16a1 YES MNNG_4 chr4 129938055 129938055 G A exonic Serinc2 synonymous SNV NM_001253386:c.C447T:p.G149G exonic Serinc2 synonymous SNV uc008uzc.1:c.C612T:p.G204G exonic ENSMUSG00000023232 synonymous SNV ENSMUST00000075677:c.C612T:p.G204G 4qD2.2 NA NA chr4 129938055 AAGxCCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 48 0 0 40.97397 0.695652 0.02 -0.201549 7 16 190 395 60 60 0 0 GG 6.316336 21 0 581 0 KEEP - Serinc2 YES MNNG_4 chr4 129938071 129938071 G A intronic Serinc2 NA NA intronic Serinc2 NA NA intronic ENSMUSG00000023232 NA NA 4qD2.2 NA NA chr4 129938071 TGTxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 38 0 0 40.35942 0.75 0.02 -0.175318 5 15 136 381 60 60 0 0 GG 3.910292 13 0 364 0 KEEP - Serinc2 YES MNNG_4 chr4 130045576 130045576 C T exonic Snrnp40 nonsynonymous SNV NM_025645:c.C509T:p.T170I exonic Snrnp40 nonsynonymous SNV uc008uzf.1:c.C509T:p.T170I exonic ENSMUSG00000074088 nonsynonymous SNV ENSMUST00000098405:c.C509T:p.T170I 4qD2.2 NA NA chr4 130045576 GTAxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 127 0 0 31.405603 0.291667 0.02 -0.420461 34 14 921 373 60 60 0 0 CC 17.146558 57 0 1624 0 KEEP + Snrnp40 YES MNNG_4 chr4 130484692 130484692 G A intronic Laptm5 NA NA intronic Laptm5 NA NA intronic ENSMUSG00000028581 NA NA 4qD2.3 NA NA chr4 130484692 TGTxCGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 49 0 0 41.67326 0.607143 0.02 -0.244752 11 17 281 417 60 60 0 0 GG 5.688726 19 0 509 0 KEEP + Laptm5 YES MNNG_4 chr4 134880412 134880412 G A intronic Srrm1 NA NA intronic Srrm1 NA NA intronic ENSMUSG00000028809 NA NA 4qD3 NA NA chr4 134880412 GAGxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 108 0 0 34.872924 0.466667 0.02 -0.263042 16 14 442 372 60 60 0 0 GG 18.951736 63 0 1794 0 KEEP - Srrm1 YES MNNG_4 chr4 134972415 134972415 G A exonic Rcan3 nonsynonymous SNV NM_022980:c.C640T:p.P214S exonic Rcan3 nonsynonymous SNV uc008vgm.1:c.C640T:p.P214S exonic ENSMUSG00000059713 nonsynonymous SNV ENSMUST00000030606:c.C640T:p.P214S 4qD3 NA NA chr4 134972415 TTGxATT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 155 0 0 76.325109 0.426667 0.02 0.836417 43 32 1136 832 60 60 0 0 GG 19.852139 66 0 1848 0 KEEP - Rcan3 YES MNNG_4 chr4 135699872 135699872 G A exonic Id3 nonsynonymous SNV NM_008321:c.G79A:p.G27S exonic Id3 nonsynonymous SNV uc012dnf.1:c.G79A:p.G27S exonic ENSMUSG00000007872 nonsynonymous SNV ENSMUST00000008016:c.G79A:p.G27S 4qD3 NA NA chr4 135699872 CGAxGCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 211 0 0 92.934789 0.443182 0.02 0.817217 49 39 1346 1006 60 60 0 0 GG 29.101945 97 0 2677 0 KEEP + Id3 YES MNNG_4 chr4 137068058 137068058 G A exonic Hspg2 synonymous SNV NM_008305:c.G1251A:p.Q417Q exonic Hspg2 synonymous SNV uc008vjc.2:c.G1251A:p.Q417Q exonic ENSMUSG00000028763 synonymous SNV ENSMUST00000030547:c.G1251A:p.Q417Q 4qD3 NA NA chr4 137068058 CCAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.959859 0.959859 1 122 1 0 38.0222 0.32 0.02 -0.438428 34 16 938 440 60 60 0 0 GG 17.726037 59 0 1628 0 KEEP + Hspg2 YES MNNG_4 chr4 137071388 137071388 G A exonic Hspg2 synonymous SNV NM_008305:c.G1998A:p.E666E exonic Hspg2 synonymous SNV uc008vjc.2:c.G1998A:p.E666E exonic ENSMUSG00000028763 synonymous SNV ENSMUST00000030547:c.G1998A:p.E666E 4qD3 NA NA chr4 137071388 AGAxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 73 0 0 67.958839 0.641026 0.02 -0.34195 14 25 384 671 60 60 0 0 GG 9.610505 32 0 890 0 KEEP + Hspg2 YES MNNG_4 chr4 137103967 137103967 G A exonic Hspg2 synonymous SNV NM_008305:c.G8190A:p.E2730E exonic Hspg2 synonymous SNV uc008vjf.2:c.G303A:p.E101E exonic ENSMUSG00000028763 synonymous SNV ENSMUST00000097839:c.G6171A:p.E2057E 4qD3 NA NA chr4 137103967 AGAxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 159 0 0 43.478906 0.3125 0.02 1.036263 44 20 1198 512 60 60 0 0 GG 23.161466 77 0 2168 0 KEEP + Hspg2 YES MNNG_4 chr4 137121637 137121637 G A exonic Hspg2 nonsynonymous SNV NM_008305:c.G12494A:p.G4165D exonic Hspg2 nonsynonymous SNV uc008vjf.2:c.G4601A:p.G1534D exonic ENSMUSG00000028763 nonsynonymous SNV ENSMUST00000097839:c.G10463A:p.G3488D 4qD3 NA NA chr4 137121637 CTGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835607 0.835716 0.999869 61 0 0 46.217081 0.513514 0.02 -0.324313 18 19 487 483 60 60 0 0 GG 6.313273 21 0 570 0 KEEP + Hspg2 YES MNNG_4 chr4 137491335 137491335 G A intronic Ece1 NA NA intronic Ece1 NA NA intronic ENSMUSG00000057530 NA NA 4qD3 NA NA chr4 137491335 ACAxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877628 0.877708 0.999909 70 0 0 72.623427 0.7 0.02 -0.350599 12 28 314 699 60 60 0 0 GG 7.215968 24 0 636 0 KEEP + Ece1 YES MNNG_4 chr4 138331787 138331787 G A intronic Pla2g2d NA NA intronic Pla2g2d NA NA intronic ENSMUSG00000041202 NA NA 4qD3 NA NA chr4 138331787 GGGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.973965 0.973965 1 144 0 0 62.352031 0.481481 0.02 1.026607 28 26 758 662 60 60 0 0 GG 21.353916 71 0 1943 0 KEEP + Pla2g2d YES MNNG_4 chr4 138748891 138748891 G A UTR5 Capzb NA NA UTR5 Capzb NA NA UTR5 ENSMUSG00000028745 NA NA 4qD3 NA NA chr4 138748891 CGGxGGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098994 0.099721 0.992708 23 0 0 9.484723 0.4 0.02 -0.087675 6 4 163 105 60 60 0 0 GG 3.007966 10 0 280 0 KEEP + Capzb YES MNNG_4 chr4 138836362 138836362 G A intronic Capzb NA NA intronic Capzb NA NA intronic ENSMUSG00000028745 NA NA 4qD3 NA NA chr4 138836362 CACxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 221 2 0 112.541261 0.5625 0.02 0.799271 35 45 811 1149 60 60 0 0 GG 32.449153 108 0 2685 0 KEEP + Capzb YES MNNG_4 chr4 138918112 138918112 G A exonic Emc1 synonymous SNV NM_001039200:c.G1194A:p.Q398Q exonic C230096C10Rik synonymous SNV uc008vmf.1:c.G1194A:p.Q398Q exonic ENSMUSG00000078517 synonymous SNV ENSMUST00000042096:c.G1194A:p.Q398Q 4qD3 NA NA chr4 138918112 GCAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 91 0 0 48.976331 0.542857 0.02 -0.306879 16 19 444 504 60 60 0 0 GG 13.525204 45 0 1272 0 KEEP + Emc1 YES MNNG_4 chr4 138966636 138966636 G A exonic Ubr4 nonsynonymous SNV NM_001160319:c.G3388A:p.V1130I exonic Ubr4 nonsynonymous SNV uc008vmm.2:c.G3388A:p.V1130I exonic ENSMUSG00000066036 nonsynonymous SNV ENSMUST00000064355:c.G3388A:p.V1130I 4qD3 NA NA chr4 138966636 AAGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 141 0 0 46.280181 0.33871 0.02 0.956503 41 21 1087 535 60 60 0 0 GG 18.869616 63 0 1676 0 KEEP + Ubr4 YES MNNG_4 chr4 138973243 138973243 G A exonic Ubr4 nonsynonymous SNV NM_001160319:c.G4447A:p.V1483I exonic Ubr4 nonsynonymous SNV uc008vmk.2:c.G538A:p.V180I exonic ENSMUSG00000066036 nonsynonymous SNV ENSMUST00000064355:c.G4447A:p.V1483I 4qD3 NA NA chr4 138973243 GAGxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 150 0 0 26.862353 0.26 0.02 -0.438294 37 13 990 331 60 60 0 0 GG 20.752648 69 0 1893 0 KEEP + Ubr4 YES MNNG_4 chr4 140812805 140812805 G A UTR3 Arhgef19 NA NA UTR3 Arhgef19 NA NA UTR3 ENSMUSG00000028919 NA NA 4qD3 NA NA chr4 140812805 CTGxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 126 0 0 42.823793 0.4 0.02 -0.394461 27 18 744 474 60 60 0 0 GG 18.91404 63 0 1720 0 KEEP + Arhgef19 YES MNNG_4 chr4 140878124 140878124 G A exonic Epha2 nonsynonymous SNV NM_010139:c.G2125A:p.D709N exonic Epha2 nonsynonymous SNV uc008voc.1:c.G2125A:p.D709N exonic ENSMUSG00000006445 nonsynonymous SNV ENSMUST00000006614:c.G2125A:p.D709N 4qE1 NA NA chr4 140878124 AAGxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 100 1 0 44.12745 0.45 0.02 -0.350727 22 18 615 475 60 60 0 0 GG 15.038761 50 0 1393 0 KEEP + Epha2 YES MNNG_4 chr4 144746673 144746673 C T exonic Vps13d nonsynonymous SNV NM_001276502:c.G2252A:p.R751K exonic Vps13d nonsynonymous SNV uc012dox.1:c.G2234A:p.R745K exonic ENSMUSG00000020220 nonsynonymous SNV ENSMUST00000020441:c.G2234A:p.R745K 4qE1 NA NA chr4 144746673 TTCxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423426 0.423478 0.999879 51 1 0 35.436047 0.619048 0.02 -0.18414 8 13 225 353 60 60 0 0 CC 6.61784 22 0 624 0 KEEP - Vps13d YES MNNG_4 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.2608 0.260965 0.999366 40 0 0 8.201951 0.25 0.02 -0.14029 12 4 334 102 60 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 YES MNNG_4 chr4 147130163 147130163 G A exonic Gm13157 synonymous SNV NM_001127189:c.C339T:p.N113N exonic Gm13157 synonymous SNV uc012dpf.1:c.C339T:p.N113N exonic ENSMUSG00000078495 synonymous SNV ENSMUST00000122309:c.C339T:p.N113N 4qE2 "Score=0.979627;Name=No.86881,chr4:146610716" NA chr4 147130163 TTGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 629 32 51 57.148983 0.19863 0.02 2.896939 117 29 3166 749 60 60 0 0 GG 109.114986 363 0 10022 0 KEEP - Gm13157 YES MNNG_4 chr4 147254044 147254044 C T intronic Mfn2 NA NA intronic Mfn2 NA NA intronic ENSMUSG00000029020 NA NA 4qE2 NA NA chr4 147254044 TGTxACT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 66 2 0 11.167413 0.277778 0.02 -0.157836 13 5 362 134 60 60 0 0 CC 11.426995 38 0 1078 0 KEEP - Mfn2 YES MNNG_4 chr4 147361113 147361113 C T UTR3 Nppb NA NA UTR3 Nppb NA NA UTR3 ENSMUSG00000029019 NA NA 4qE2 NA NA chr4 147361113 ACTxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 262 5 0 124.917434 0.61039 0.02 0.817173 30 47 794 1248 60 60 0 0 CC 38.100117 127 0 3542 0 KEEP + Nppb YES MNNG_4 chr4 147837020 147837020 C T exonic Mtor synonymous SNV NM_020009:c.C1350T:p.V450V exonic Mtor synonymous SNV uc008vur.2:c.C1350T:p.V450V exonic ENSMUSG00000028991 synonymous SNV ENSMUST00000103221:c.C1350T:p.V450V 4qE2 NA NA chr4 147837020 GGTxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 177 0 0 44.842896 0.31746 0.02 0.947654 43 20 1189 524 60 60 0 0 CC 24.638085 82 0 2311 0 KEEP + Mtor YES MNNG_4 chr4 147968290 147968290 C T exonic Srm synonymous SNV NM_009272:c.C864T:p.F288F exonic Srm synonymous SNV uc008vuw.1:c.C864T:p.F288F exonic ENSMUSG00000006442 synonymous SNV ENSMUST00000006611:c.C864T:p.F288F 4qE2 NA NA chr4 147968290 CTTxGTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 155 0 0 49.337142 0.375 0.02 1.009381 35 21 862 554 60 60 0 0 CC 23.744143 79 0 2067 0 KEEP + Srm YES MNNG_4 chr4 148562242 148562242 G T exonic Kif1b synonymous SNV NM_207682:c.C4240A:p.R1414R exonic Kif1b synonymous SNV uc012dpq.1:c.C232A:p.R78R exonic ENSMUSG00000063077 synonymous SNV ENSMUST00000055647:c.C4240A:p.R1414R 4qE2 NA NA chr4 148562242 TCCxCCT G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 215 2 0 49.541635 0.323944 0.02 0.966811 48 23 1216 580 60 60 0 0 GG 31.559934 105 0 2706 0 KEEP - Kif1b NO MNNG_4 chr4 148612140 148612140 C T exonic Kif1b synonymous SNV NM_008441:c.G2430A:p.G810G exonic Kif1b synonymous SNV uc008vwa.1:c.G2430A:p.G810G exonic ENSMUSG00000063077 synonymous SNV ENSMUST00000030806:c.G2430A:p.G810G 4qE2 NA NA chr4 148612140 TTTxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 220 0 0 103.062767 0.493976 0.02 0.772281 42 41 1152 1085 60 60 0 1 CC 31.279151 104 0 2944 0 KEEP - Kif1b YES MNNG_4 chr4 150016625 150016625 G A exonic Slc45a1 synonymous SNV NM_173774:c.C645T:p.H215H exonic Slc45a1 synonymous SNV uc008vxt.1:c.C645T:p.H215H exonic ENSMUSG00000039838 synonymous SNV ENSMUST00000037827:c.C645T:p.H215H 4qE2 NA NA chr4 150016625 GGCxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 0.999999 73 0 0 37.043718 0.483871 0.02 -0.271392 16 15 368 392 60 60 0 0 GG 10.80849 36 0 841 0 KEEP - Slc45a1 YES MNNG_4 chr4 151347584 151347584 C T intronic Dnajc11 NA NA intronic Dnajc11 NA NA intronic ENSMUSG00000039768 NA NA 4qE2 NA NA chr4 151347584 CCCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 134 0 0 72.328515 0.586957 0.02 -0.403324 19 27 517 730 60 60 0 0 CC 22.253812 74 0 2047 0 KEEP + Dnajc11 YES MNNG_4 chr4 151461723 151461723 C T intergenic "Nol9(dist=26120),Plekhg5(dist=9105)" NA NA intergenic "Nol9(dist=26120),Plekhg5(dist=9105)" NA NA intronic ENSMUSG00000039713 NA NA 4qE2 NA NA chr4 151461723 CACxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 81 0 0 17.891732 0.296296 0.02 -0.236736 19 8 519 212 60 60 0 0 CC 12.888214 43 0 1177 0 KEEP NA Nol9 YES MNNG_4 chr4 151749138 151749138 C T intronic Chd5 NA NA intronic Chd5 NA NA intronic ENSMUSG00000005045 NA NA 4qE2 NA NA chr4 151749138 CTGxCTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 141 0 0 59.374052 0.571429 0.02 -0.376933 18 24 495 604 60 60 0 0 CC 23.442709 78 0 2128 0 KEEP + Chd5 YES MNNG_4 chr4 154270658 154270658 C T UTR3 Fam213b NA NA UTR3 2810405K02Rik NA NA UTR3 ENSMUSG00000029059 NA NA 4qE2 NA NA chr4 154270658 CCTxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954489 0.954491 0.999997 96 0 0 28.799031 0.265306 0.02 -0.429341 36 13 984 349 60 60 0 0 CC 9.625731 32 0 903 0 KEEP - Fam213b YES MNNG_4 chr4 154963561 154963561 C T exonic Nadk nonsynonymous SNV NM_001159637:c.C1297T:p.P433S exonic Nadk nonsynonymous SNV uc008wdv.2:c.C1126T:p.P376S exonic ENSMUSG00000029063 nonsynonymous SNV ENSMUST00000097745:c.C1126T:p.P376S 4qE2 NA NA chr4 154963561 TTTxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 85 0 0 51.80533 0.655172 0.02 -0.253543 10 19 257 508 60 60 0 0 CC 14.697334 49 0 1346 0 KEEP + Nadk YES MNNG_4 chr4 155023546 155023546 C T exonic Cdk11b synonymous SNV NM_007661:c.C2088T:p.Y696Y exonic Cdk11b synonymous SNV uc008wec.1:c.C2085T:p.Y695Y exonic ENSMUSG00000029062 synonymous SNV ENSMUST00000105600:c.C2088T:p.Y696Y 4qE2 NA NA chr4 155023546 CTAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 146 4 0 84.614921 0.557377 0.02 0.965286 27 34 711 866 60 60 0 0 CC 20.751305 69 0 1881 0 KEEP + Cdk11b YES MNNG_4 chr4 155035262 155035262 C T exonic Mib2 nonsynonymous SNV NM_001256107:c.G200A:p.G67D exonic Mib2 nonsynonymous SNV uc008wee.1:c.G200A:p.G67D exonic ENSMUSG00000029060 nonsynonymous SNV ENSMUST00000077624:c.G200A:p.G67D 4qE2 NA NA chr4 155035262 TAGxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 234 2 0 59.572165 0.321429 0.02 0.763539 57 27 1559 696 60 60 0 0 CC 37.87851 126 0 3456 0 KEEP - Mib2 YES MNNG_4 chr4 155120165 155120165 C T exonic Atad3a synonymous SNV NM_179203:c.G1584A:p.E528E exonic Atad3a synonymous SNV uc008wen.2:c.G1584A:p.E528E exonic ENSMUSG00000029036 synonymous SNV ENSMUST00000105594:c.G1347A:p.E449E 4qE2 NA NA chr4 155120165 AATxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 98 9 0 28.738074 0.387097 0.02 -0.315632 19 12 518 320 60 60 0 0 CC 14.426515 48 0 1343 0 KEEP - Atad3a YES MNNG_4 chr4 155215181 155215181 C T exonic Mxra8 synonymous SNV NM_024263:c.C237T:p.G79G exonic Mxra8 synonymous SNV uc012dqy.1:c.C237T:p.G79G exonic ENSMUSG00000029070 synonymous SNV ENSMUST00000030947:c.C237T:p.G79G 4qE2 NA NA chr4 155215181 GGGxCCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 96 0 0 31.227902 0.318182 0.02 -0.385727 30 14 812 365 60 60 0 1 CC 13.233291 44 0 1208 0 KEEP + Mxra8 YES MNNG_4 chr4 155544655 155544655 C T intronic Agrn NA NA intronic Agrn NA NA intronic ENSMUSG00000041936 NA NA 4qE2 NA NA chr4 155544655 AATxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 89 0 0 29.898923 0.342105 0.02 -0.33316 25 13 690 343 60 60 0 0 CC 12.33247 41 0 1160 0 KEEP - Agrn YES MNNG_4 chr4 155546776 155546776 C T exonic Agrn nonsynonymous SNV NM_021604:c.G3619A:p.A1207T exonic Agrn nonsynonymous SNV uc008wgf.1:c.G3115A:p.A1039T exonic ENSMUSG00000041936 nonsynonymous SNV ENSMUST00000075787:c.G3115A:p.A1039T 4qE2 NA NA chr4 155546776 GTGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 102 0 0 67.584437 0.613636 0.02 -0.394133 17 27 454 675 60 60 0 0 CC 13.233464 44 0 1213 0 KEEP - Agrn YES MNNG_4 chr4 19955651 19955651 G A exonic Ttpa nonsynonymous SNV NM_015767:c.G760A:p.D254N exonic Ttpa nonsynonymous SNV uc008sci.1:c.G553A:p.D185N exonic ENSMUSG00000073988 nonsynonymous SNV ENSMUST00000098244:c.G760A:p.D254N 4qA3 NA NA chr4 19955651 GAGxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 99 0 0 53.89501 0.44 0.02 -0.438403 28 22 773 583 60 60 0 0 GG 10.829648 36 0 1026 0 KEEP + Ttpa YES MNNG_4 chr4 32914086 32914086 G A exonic Ankrd6 nonsynonymous SNV NM_001012451:c.C395T:p.A132V exonic "Ankrd6,mKIAA0957" nonsynonymous SNV uc008sff.1:c.C395T:p.A132V exonic ENSMUSG00000040183 nonsynonymous SNV ENSMUST00000084748:c.C395T:p.A132V 4qA5 NA NA chr4 32914086 TTGxCTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 66 2 0 33.532494 0.590909 0.02 -0.192858 9 13 240 338 60 60 0 0 GG 10.180604 34 0 919 0 KEEP - Ankrd6 YES MNNG_4 chr4 40182306 40182306 G A exonic Ddx58 synonymous SNV NM_172689:c.C216T:p.A72A exonic Ddx58 synonymous SNV uc008shf.1:c.C216T:p.A72A exonic ENSMUSG00000040296 synonymous SNV ENSMUST00000037907:c.C216T:p.A72A 4qA5 NA NA chr4 40182306 AAAxGCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120175 0.120436 0.997832 29 0 0 12.392445 0.454545 0.02 -0.096449 6 5 166 133 60 60 0 0 GG 4.811766 16 0 446 0 KEEP - Ddx58 YES MNNG_4 chr4 43006583 43006583 C A exonic Vcp synonymous SNV NM_009503:c.G420T:p.L140L exonic Vcp synonymous SNV uc008sor.2:c.G420T:p.L140L exonic ENSMUSG00000028452 synonymous SNV ENSMUST00000030164:c.G420T:p.L140L 4qA5 NA NA chr4 43006583 TTCxAGG C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 205 0 1 108.299669 0.602941 0.02 0.992367 27 41 754 1086 60 60 0 0 CC 27.975725 93 0 2651 0 KEEP - Vcp NO MNNG_4 chr4 43043069 43043069 G A intronic Stoml2 NA NA intronic Stoml2 NA NA intronic ENSMUSG00000028455 NA NA 4qA5 NA NA chr4 43043069 TAAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 313 2 0 131.356915 0.537634 0.02 0.871012 43 50 1180 1354 60 60 0 0 GG 53.844011 179 0 5059 0 KEEP - Stoml2 YES MNNG_4 chr4 43660974 43660974 G A exonic Npr2 nonsynonymous SNV NM_173788:c.G2545A:p.G849R exonic Npr2 nonsynonymous SNV uc008sqp.1:c.G835A:p.G279R exonic ENSMUSG00000028469 nonsynonymous SNV ENSMUST00000107877:c.G2470A:p.G824R 4qB1 NA NA chr4 43660974 CGGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 77 0 0 60.519746 0.575 0.02 -0.350694 17 23 463 614 60 60 0 0 GG 9.024172 30 0 844 0 KEEP + Npr2 YES MNNG_4 chr4 45870844 45870844 G A intronic 1300002K09Rik NA NA intronic 1300002K09Rik NA NA intronic ENSMUSG00000028327 NA NA 4qB1 NA NA chr4 45870844 AACxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.99986 50 0 0 28.986956 0.413793 0.02 -0.262787 17 12 400 318 60 60 0 0 GG 5.706342 19 0 459 0 KEEP + 1300002K09Rik YES MNNG_4 chr4 45897597 45897597 G A intronic 1300002K09Rik NA NA intronic 1300002K09Rik NA NA intronic ENSMUSG00000028327 NA NA 4qB1 NA NA chr4 45897597 AGAxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 58 0 0 29.204396 0.521739 0.02 -0.201622 11 12 292 304 60 60 0 0 GG 9.321892 31 0 830 0 KEEP + 1300002K09Rik YES MNNG_4 chr4 45916739 45916739 G A exonic E230008N13Rik synonymous SNV NM_198660:c.G1032A:p.E344E exonic E230008N13Rik synonymous SNV uc008sta.2:c.G351A:p.E117E exonic ENSMUSG00000035539 unknown UNKNOWN 4qB1 NA NA chr4 45916739 CGAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 186 0 0 94.924339 0.636364 0.02 1.115129 20 35 545 939 60 60 0 0 GG 31.874456 106 0 2957 0 KEEP + E230008N13Rik YES MNNG_4 chr4 46036284 46036284 G C exonic Tdrd7 nonsynonymous SNV NM_146142:c.G2283C:p.L761F exonic Tdrd7 nonsynonymous SNV uc008std.1:c.G2283C:p.L761F exonic ENSMUSG00000035517 nonsynonymous SNV ENSMUST00000043784:c.G2283C:p.L761F 4qB1 NA NA chr4 46036284 CTTxGCT G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 121 0 0 7.630196 0.090909 0.02 1.115092 50 5 1389 125 60 60 0 0 GG 14.43991 48 0 1377 0 KEEP + Tdrd7 NO MNNG_4 chr4 46358535 46358535 G A downstream Foxe1 NA NA downstream Foxe1 NA NA UTR3 ENSMUSG00000070990 NA NA 4qB1 NA NA chr4 46358535 TAAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959858 0.959859 0.999999 91 0 0 75.125754 0.58 0.02 -0.438143 21 29 572 761 60 60 0 0 GG 10.512223 35 0 963 0 KEEP + Foxe1 YES MNNG_4 chr4 46534957 46534957 G A exonic Trim14 synonymous SNV NM_029077:c.C591T:p.H197H exonic Trim14 synonymous SNV uc008stw.1:c.C126T:p.H42H exonic ENSMUSG00000039853 synonymous SNV ENSMUST00000046897:c.C591T:p.H197H 4qB1 NA NA chr4 46534957 AGGxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693584 0.693668 0.999879 58 0 0 14.264474 0.233333 0.02 -0.263024 23 7 622 180 60 60 0 0 GG 6.554105 22 0 581 0 KEEP - Trim14 YES MNNG_4 chr4 46811426 46811426 G A exonic Gabbr2 synonymous SNV NM_001081141:c.C919T:p.L307L exonic Gabbr2 synonymous SNV uc008sug.1:c.C919T:p.L307L exonic ENSMUSG00000039809 synonymous SNV ENSMUST00000107749:c.C919T:p.L307L 4qB1 NA NA chr4 46811426 CCAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 51 0 0 8.170398 0.190476 0.02 -0.184131 17 4 466 107 60 60 0 0 GG 6.918347 23 0 644 0 KEEP - Gabbr2 YES MNNG_4 chr4 48465751 48465751 G A intronic Tex10 NA NA intronic Tex10 NA NA intronic ENSMUSG00000028345 NA NA 4qB1 NA NA chr4 48465751 CAAxTTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.99986 40 0 0 11.038366 0.333333 0.02 -0.131514 10 5 275 128 60 60 0 0 GG 5.715076 19 0 532 0 KEEP - Tex10 YES MNNG_4 chr4 49535345 49535345 G A exonic Zfp189 nonsynonymous SNV NM_145547:c.G109A:p.V37I exonic Zfp189 nonsynonymous SNV uc008svv.2:c.G109A:p.V37I exonic ENSMUSG00000039634 nonsynonymous SNV ENSMUST00000107696:c.G109A:p.V37I 4qB1 NA NA chr4 49535345 CTGxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.999859 37 0 0 19.860539 0.571429 0.02 -0.122704 6 8 153 202 60 60 0 0 GG 5.413262 18 0 490 0 KEEP + Zfp189 YES MNNG_4 chr4 51241416 51241416 G A exonic Cylc2 nonsynonymous SNV NM_001162865:c.G614A:p.G205E exonic Cylc2 nonsynonymous SNV uc012dee.1:c.G614A:p.G205E exonic ENSMUSG00000039555 nonsynonymous SNV ENSMUST00000041392:c.G614A:p.G205E 4qB1 NA NA chr4 51241416 CTGxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120423 0.120436 0.999892 35 0 1 12.592803 0.454545 0.02 -0.09645 6 5 164 135 60 60 0 0 GG 7.219809 24 0 685 0 KEEP + Cylc2 YES MNNG_4 chr4 53046897 53046897 A T exonic Abca1 nonsynonymous SNV NM_013454:c.T6704A:p.L2235Q exonic Abca1 nonsynonymous SNV uc008swu.1:c.T6704A:p.L2235Q exonic ENSMUSG00000015243 nonsynonymous SNV ENSMUST00000030010:c.T6704A:p.L2235Q 4qB2 NA NA chr4 53046897 TGCxGTG A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 103 0 0 49.228653 0.465116 0.02 -0.376894 23 20 615 526 60 60 0 0 AA 14.1377 47 0 1320 0 KEEP - Abca1 NO MNNG_4 chr4 53798728 53798728 G A exonic Tal2 synonymous SNV NM_009317:c.G36A:p.R12R exonic Tal2 synonymous SNV uc008sxg.1:c.G36A:p.R12R exonic ENSMUSG00000028417 synonymous SNV ENSMUST00000030124:c.G36A:p.R12R 4qB2 NA NA chr4 53798728 GCGxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 68 0 0 26.452038 0.423077 0.02 -0.236735 15 11 418 289 60 60 0 0 GG 9.62534 32 0 894 0 KEEP + Tal2 YES MNNG_4 chr4 55398462 55398462 G A exonic Rad23b nonsynonymous SNV NM_009011:c.G1126A:p.A376T exonic Rad23b nonsynonymous SNV uc012dej.1:c.G1126A:p.A376T exonic ENSMUSG00000028426 nonsynonymous SNV ENSMUST00000030134:c.G1126A:p.A376T 4qB3 NA NA chr4 55398462 GAAxCTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09972 0.099721 0.999988 43 0 0 9.685223 0.4 0.02 -0.08767 6 4 161 107 60 60 0 0 GG 8.121664 27 0 760 0 KEEP + Rad23b YES MNNG_4 chr4 56781923 56781923 G A exonic Ikbkap synonymous SNV NM_026079:c.C3126T:p.S1042S exonic Ikbkap synonymous SNV uc012del.1:c.C3126T:p.S1042S exonic ENSMUSG00000028431 synonymous SNV ENSMUST00000030140:c.C3126T:p.S1042S 4qB3 NA NA chr4 56781923 TTTxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 63 0 0 53.119993 0.769231 0.02 -0.227885 6 20 167 497 60 60 0 0 GG 8.724343 29 0 836 0 KEEP - Ikbkap YES MNNG_4 chr4 58112975 58112975 G A exonic Svep1 nonsynonymous SNV NM_022814:c.C3940T:p.P1314S exonic Svep1 nonsynonymous SNV uc008syr.1:c.C3940T:p.P1314S exonic ENSMUSG00000028369 nonsynonymous SNV ENSMUST00000042850:c.C3940T:p.P1314S 4qB3 NA NA chr4 58112975 AGGxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 159 0 0 106.276674 0.690909 0.02 1.115424 17 38 447 1029 60 60 0 0 GG 25.504483 85 0 2338 0 KEEP - Svep1 YES MNNG_4 chr4 59897914 59897914 G A exonic Snx30 synonymous SNV NM_172468:c.G681A:p.K227K exonic Snx30 synonymous SNV uc008tae.1:c.G681A:p.K227K exonic ENSMUSG00000028385 synonymous SNV ENSMUST00000030080:c.G681A:p.K227K 4qB3 NA NA chr4 59897914 CAAxCAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 79 0 0 37.690213 0.555556 0.02 -0.236694 12 15 332 386 60 60 0 0 GG 12.332714 41 0 1160 0 KEEP + Snx30 YES MNNG_4 chr4 62173022 62173022 G A exonic Alad nonsynonymous SNV NM_001276446:c.C296T:p.S99F exonic Alad nonsynonymous SNV uc008tez.1:c.C296T:p.S99F exonic ENSMUSG00000028393 nonsynonymous SNV ENSMUST00000030090:c.C296T:p.S99F 4qB3 NA NA chr4 62173022 GGGxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 603 5 0 189.995802 0.36 0.02 4.416961 144 81 3920 2152 60 60 0 0 GG 80.854416 279 1 7808 28 KEEP - Alad YES MNNG_4 chr4 62832394 62832394 T G exonic Kif12 nonsynonymous SNV NM_010616:c.A243C:p.R81S exonic Kif12 nonsynonymous SNV uc008tfq.1:c.A243C:p.R81S exonic ENSMUSG00000028357 nonsynonymous SNV ENSMUST00000030042:c.A243C:p.R81S 4qB3 NA NA chr4 62832394 AGCxCTG T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.58286 0.58293 0.999879 51 0 0 19.523121 0.409091 0.02 -0.227884 13 9 351 217 70 60 0 0 TT 6.610354 22 0 590 0 KEEP - Kif12 NO MNNG_4 chr4 6320134 6320134 G A exonic Sdcbp nonsynonymous SNV NM_001098227:c.G623A:p.G208E exonic Sdcbp nonsynonymous SNV uc008rxm.1:c.G620A:p.G207E exonic ENSMUSG00000028249 nonsynonymous SNV ENSMUST00000029912:c.G623A:p.G208E 4qA1 NA NA chr4 6320134 GTGxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 122 0 0 62.581269 0.480769 0.02 1.141416 27 25 747 663 60 60 0 0 GG 14.739984 49 0 1393 0 KEEP + Sdcbp YES MNNG_4 chr4 70195265 70195265 G A exonic Megf9 nonsynonymous SNV NM_172694:c.C592T:p.P198S exonic Megf9 nonsynonymous SNV uc008tib.1:c.C592T:p.P198S exonic ENSMUSG00000039270 nonsynonymous SNV ENSMUST00000037881:c.C592T:p.P198S 4qC2 NA NA chr4 70195265 CTGxGGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 66 0 0 59.093973 0.777778 0.02 -0.236714 6 21 165 553 60 60 0 0 GG 9.925793 33 0 920 0 KEEP - Megf9 YES MNNG_4 chr4 83937961 83937961 G A exonic Bnc2 nonsynonymous SNV NM_172870:c.C2074T:p.P692S exonic Bnc2 nonsynonymous SNV uc008tlh.2:c.C2041T:p.P681S exonic ENSMUSG00000028487 nonsynonymous SNV ENSMUST00000030211:c.C2041T:p.P681S 4qC4 NA NA chr4 83937961 CGGxCCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 189 0 0 94.01124 0.541667 0.02 0.869533 33 39 878 970 60 60 0 0 GG 28.565768 95 0 2594 0 KEEP - Bnc2 YES MNNG_4 chr4 8678648 8678648 G A UTR5 Chd7 NA NA UTR5 Chd7 NA NA UTR5 ENSMUSG00000041235 NA NA 4qA1 NA NA chr4 8678648 GAAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 68 0 0 53.975204 0.645161 0.02 -0.271804 11 20 306 532 60 60 0 0 GG 9.324647 31 0 884 0 KEEP + Chd7 YES MNNG_4 chr4 86873316 86873316 G A exonic Slc24a2 nonsynonymous SNV NM_001110240:c.C404T:p.A135V exonic Slc24a2 nonsynonymous SNV uc008tmi.1:c.C404T:p.A135V exonic ENSMUSG00000037996 nonsynonymous SNV ENSMUST00000044990:c.C404T:p.A135V 4qC4 NA NA chr4 86873316 ATGxCAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 218 4 0 86.20278 0.596491 0.02 1.000315 23 34 630 867 60 60 0 0 GG 37.898304 126 0 3502 0 KEEP - Slc24a2 YES MNNG_4 chr4 88289891 88289891 G A exonic Ifna13 synonymous SNV NM_177347:c.C399T:p.P133P exonic Ifna13 synonymous SNV uc008tng.1:c.C399T:p.P133P exonic ENSMUSG00000063376 synonymous SNV ENSMUST00000072734:c.C399T:p.P133P 4qC4 NA NA chr4 88289891 CAGxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 400 10 2 221.75267 0.563758 0.02 3.468612 65 84 1732 2260 60 60 0 0 GG 64.968329 216 0 6012 0 KEEP - Ifna13 YES MNNG_4 chr4 95974106 95974106 C A exonic Cyp2j11 nonsynonymous SNV NM_001004141:c.G1043T:p.G348V exonic Cyp2j11-ps nonsynonymous SNV uc008tth.2:c.G1043T:p.G348V exonic ENSMUSG00000066097 nonsynonymous SNV ENSMUST00000015368:c.G1043T:p.G348V 4qC5 NA NA chr4 95974106 TGTxCAA C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 161 1 0 16.221898 0.147541 0.02 0.965155 52 9 1429 230 60 60 0 0 CC 24.364147 81 0 2288 0 KEEP - Cyp2j11 NO MNNG_4 chr4 96238646 96238646 G A exonic Cyp2j9 nonsynonymous SNV NM_028979:c.C1310T:p.S437F exonic Cyp2j9 nonsynonymous SNV uc008ttj.1:c.C1310T:p.S437F exonic ENSMUSG00000015224 nonsynonymous SNV ENSMUST00000055693:c.C1310T:p.S437F 4qC5 NA NA chr4 96238646 AAGxATT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 77 0 0 46.706844 0.545455 0.02 -0.289328 15 18 406 480 60 60 0 0 GG 11.129315 37 0 1042 0 KEEP - Cyp2j9 YES MNNG_4 chr5 101238586 101238586 C T exonic Fam175a nonsynonymous SNV NM_172405:c.G673A:p.E225K exonic Fam175a nonsynonymous SNV uc008yid.1:c.G673A:p.E225K exonic ENSMUSG00000035234 nonsynonymous SNV ENSMUST00000044535:c.G673A:p.E225K 5qE4 NA NA chr5 101238586 ACTxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 207 2 0 127.401048 0.455357 0.02 2.115416 61 51 1683 1366 60 60 0 0 CC 21.655662 72 0 2060 0 KEEP - Fam175a YES MNNG_4 chr5 101249933 101249933 C A exonic Fam175a stopgain SNV NM_172405:c.G4T:p.E2X exonic Fam175a stopgain SNV uc008yid.1:c.G4T:p.E2X exonic ENSMUSG00000035234 stopgain SNV ENSMUST00000044535:c.G4T:p.E2X 5qE4 NA NA chr5 101249933 CCTxCAT C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 0.999999 84 0 0 37.896496 0.516129 0.02 -0.271738 15 16 410 396 60 60 0 0 CC 10.823748 36 0 985 0 KEEP - Fam175a NO MNNG_4 chr5 10245163 10245163 C T intergenic "Grm3(dist=519811),Gm6455(dist=619866)" NA NA intergenic "AK136146(dist=7408),LOC545732(dist=619866)" NA NA intronic ENSMUSG00000069355 NA NA 5qA1 "Score=0.965561;Name=No.90096,chr5:11127376" NA chr5 10245163 GAGxAGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 156 1 17 27.235757 0.387097 0.02 -0.271787 19 12 522 305 60 60 0 0 CC 28.575027 95 0 2656 0 KEEP NA Grm3 YES MNNG_4 chr5 103342259 103342259 G A exonic Mapk10 nonsynonymous SNV NM_001081567:c.C1340T:p.S447F exonic Mapk10 nonsynonymous SNV uc008yjc.1:c.C1340T:p.S447F exonic ENSMUSG00000046709 nonsynonymous SNV ENSMUST00000086854:c.C1340T:p.S447F 5qE5 NA NA chr5 103342259 TCAxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 155 1 0 92.284015 0.480519 0.02 0.922223 40 37 1113 978 60 60 0 0 GG 16.545535 55 0 1580 0 KEEP - Mapk10 YES MNNG_4 chr5 104606391 104606391 G A exonic Dspp nonsynonymous SNV NM_010080:c.G1600A:p.E534K exonic Dspp nonsynonymous SNV uc008ykd.1:c.G1600A:p.E534K exonic ENSMUSG00000053268 nonsynonymous SNV ENSMUST00000112771:c.G1600A:p.E534K 5qE5 NA NA chr5 104606391 AGTxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 140 2 0 42.555137 0.351852 0.02 1.026755 35 19 954 487 60 60 0 0 GG 18.646148 62 0 1772 0 KEEP + Dspp YES MNNG_4 chr5 104636677 104636677 C T intronic Dmp1 NA NA intronic Dmp1 NA NA intronic ENSMUSG00000029307 NA NA 5qE5 NA NA chr5 104636677 ATTxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 95 0 0 36.471886 0.428571 0.02 -0.315651 20 15 554 397 60 60 0 0 CC 12.634894 42 0 1207 0 KEEP + Dmp1 YES MNNG_4 chr5 104767238 104767238 G A exonic Mepe stopgain SNV NM_053172:c.G1224A:p.W408X exonic Mepe stopgain SNV uc008ykh.2:c.G1224A:p.W408X exonic ENSMUSG00000053863 stopgain SNV ENSMUST00000066207:c.G1224A:p.W408X 5qE5 NA NA chr5 104767238 CTGxCCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 106 2 0 35.796481 0.380952 0.02 -0.368045 26 16 712 403 60 60 0 0 GG 13.532797 45 0 1244 0 KEEP + Mepe YES MNNG_4 chr5 105512660 105512660 C T exonic Gbp9 nonsynonymous SNV NM_172777:c.G1078A:p.E360K exonic Gbp9 nonsynonymous SNV uc008ykw.2:c.G1078A:p.E360K exonic ENSMUSG00000029298 nonsynonymous SNV ENSMUST00000031238:c.G1078A:p.E360K 5qE5 "Score=0.922459;Name=No.90935,chr5:105572145" NA chr5 105512660 CTTxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 208 1 0 137.344356 0.509434 0.02 2.256574 52 54 1418 1435 60 60 0 0 CC 24.529447 85 1 2399 9 KEEP - Gbp9 YES MNNG_4 chr5 105647949 105647949 C T exonic Gbp10 nonsynonymous SNV NM_001039646:c.G1435A:p.A479T exonic Gbp10 nonsynonymous SNV uc008ykz.2:c.G1435A:p.A479T exonic ENSMUSG00000054588 nonsynonymous SNV ENSMUST00000100961:c.G1435A:p.A479T 5qE5 "Score=0.969352;Name=No.90938,chr5:105683326" NA chr5 105647949 CAGxAGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 442 0 0 167.986114 0.510791 0.02 1.676314 68 71 1851 1760 60 60 0 0 CC 72.447166 241 0 6695 0 KEEP - Gbp10 YES MNNG_4 chr5 105665084 105665084 C A exonic Gbp10 stopgain SNV NM_001039646:c.G70T:p.E24X exonic Gbp10 stopgain SNV uc008ykz.2:c.G70T:p.E24X exonic ENSMUSG00000054588 stopgain SNV ENSMUST00000100961:c.G70T:p.E24X 5qE5 "Score=0.969352;Name=No.90938,chr5:105683326" NA chr5 105665084 CTTxCTG C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 277 0 36 87.570855 0.44186 0.02 0.746123 48 38 1321 951 60 60 0 1 CC 40.891837 136 0 3802 0 KEEP - Gbp10 NO MNNG_4 chr5 107327270 107327270 C T intronic Hfm1 NA NA intronic Hfm1 NA NA intronic ENSMUSG00000043410 NA NA 5qE5 NA NA chr5 107327270 TTGxACA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 178 0 0 55.397183 0.373134 0.02 0.815954 42 25 1148 627 60 60 0 0 CC 22.570582 80 1 2198 13 KEEP - Hfm1 YES MNNG_4 chr5 107403951 107403951 C T intronic Cdc7 NA NA intronic Cdc7 NA NA exonic ENSMUSG00000029283 nonsynonymous SNV ENSMUST00000031219:c.C916T:p.L306F 5qE5 NA NA chr5 107403951 AGAxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 144 0 0 59.305648 0.431034 0.02 1.089017 33 25 871 646 60 60 0 0 CC 19.241 64 0 1773 0 KEEP + Cdc7 YES MNNG_4 chr5 108873630 108873630 C T intronic Mfsd7a NA NA intronic "Mfsd7,Mfsd7a" NA NA intronic ENSMUSG00000029490 NA NA 5qF NA NA chr5 108873630 TAAxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 118 0 0 68.785347 0.54902 0.02 1.248436 23 28 603 707 60 60 0 0 CC 15.640972 52 0 1453 0 KEEP - Mfsd7a YES MNNG_4 chr5 109011252 109011252 C T exonic Gak nonsynonymous SNV NM_001282052:c.G2285A:p.C762Y exonic Gak nonsynonymous SNV uc008yog.1:c.G329A:p.C110Y exonic ENSMUSG00000062234 nonsynonymous SNV ENSMUST00000112579:c.G2774A:p.C925Y 5qF NA NA chr5 109011252 GAGxAGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.259501 0.260965 0.994391 35 0 0 25.566423 0.625 0.02 -0.140268 6 10 168 254 60 60 0 0 CC 3.910678 13 0 371 0 KEEP - Gak YES MNNG_4 chr5 109600667 109600667 G A exonic Vmn2r13 stopgain SNV NM_001104624:c.C1465T:p.Q489X exonic Vmn2r13 stopgain SNV uc009vdk.1:c.C1465T:p.Q489X exonic ENSMUSG00000091635 stopgain SNV ENSMUST00000053253:c.C1465T:p.Q489X 5qF "Score=0.905069;Name=No.90956,chr5:109519308" NA chr5 109600667 GTTxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 533 6 1 161.815553 0.387097 0.02 2.860678 114 72 3103 1814 60 60 0 0 GG 76.102819 253 0 7137 0 KEEP - Vmn2r13 YES MNNG_4 chr5 110726411 110726411 C T exonic Pole synonymous SNV NM_011132:c.C1404T:p.Y468Y exonic Pole synonymous SNV uc008yql.2:c.C402T:p.Y134Y exonic ENSMUSG00000007080 synonymous SNV ENSMUST00000007296:c.C1404T:p.Y468Y 5qF NA NA chr5 110726411 CTAxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 379 1 0 138.904512 0.41844 0.02 1.746522 82 59 2208 1524 60 60 0 1 CC 50.528709 168 0 4626 0 KEEP + Pole YES MNNG_4 chr5 110805488 110805488 G A exonic Fbrsl1 nonsynonymous SNV NM_028596:c.C350T:p.T117I exonic Fbrsl1 nonsynonymous SNV uc008yqw.1:c.C350T:p.T117I exonic ENSMUSG00000043323 nonsynonymous SNV ENSMUST00000056124:c.C350T:p.T117I 5qF NA NA chr5 110805488 GAAxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 150 0 0 78.474437 0.561404 0.02 1.000371 25 32 660 802 60 60 0 0 GG 21.341226 71 0 1925 0 KEEP - Fbrsl1 YES MNNG_4 chr5 111084606 111084606 G A exonic Ddx51 nonsynonymous SNV NM_027156:c.G934A:p.A312T exonic Ddx51 nonsynonymous SNV uc008yre.2:c.G934A:p.A312T exonic ENSMUSG00000029504 nonsynonymous SNV ENSMUST00000031478:c.G934A:p.A312T 5qF NA NA chr5 111084606 CTGxCCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 257 2 0 137.316398 0.456693 0.02 1.869146 69 58 1887 1477 60 60 0 0 GG 26.358314 88 0 2377 0 KEEP + Ddx51 YES MNNG_4 chr5 111100123 111100123 C T intronic Ep400 NA NA intronic Ep400 NA NA intronic ENSMUSG00000029505 NA NA 5qF NA NA chr5 111100123 AATxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668432 0.668523 0.999863 54 0 0 41.566302 0.551724 0.02 -0.254243 13 16 353 426 60 60 0 0 CC 6.016374 20 0 568 0 KEEP - Ep400 YES MNNG_4 chr5 111270401 111270401 C T exonic Chek2 nonsynonymous SNV NM_016681:c.C170T:p.S57F exonic Chek2 nonsynonymous SNV uc008yrw.1:c.C170T:p.S57F exonic ENSMUSG00000029521 nonsynonymous SNV ENSMUST00000066160:c.C170T:p.S57F 5qF NA NA chr5 111270401 CGTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 160 0 0 82.97724 0.515625 0.02 1.027467 31 33 851 865 60 60 0 0 CC 23.458764 78 0 2195 0 KEEP + Chek2 YES MNNG_4 chr5 111848962 111848962 G A exonic Mn1 nonsynonymous SNV NM_001081235:c.G1777A:p.E593K exonic Mn1 nonsynonymous SNV uc008yse.1:c.G1777A:p.E593K exonic ENSMUSG00000070576 nonsynonymous SNV ENSMUST00000094463:c.G1777A:p.E593K 5qF NA NA chr5 111848962 CGCxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 76 0 0 25.324762 0.342857 0.02 -0.305937 23 12 573 294 60 60 0 0 GG 8.713133 29 0 739 0 KEEP + Mn1 YES MNNG_4 chr5 112867600 112867600 G A exonic Sez6l synonymous SNV NM_001253916:c.C2049T:p.D683D exonic Sez6l synonymous SNV uc008yti.1:c.C714T:p.D238D exonic ENSMUSG00000058153 synonymous SNV ENSMUST00000075387:c.C2049T:p.D683D 5qF NA NA chr5 112867600 GGAxTCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 105 2 0 28.179824 0.317073 0.02 -0.359431 28 13 744 331 60 60 0 0 GG 14.436474 48 0 1322 0 KEEP - Sez6l YES MNNG_4 chr5 112869855 112869855 C T exonic Sez6l nonsynonymous SNV NM_001253916:c.G2011A:p.G671R exonic Sez6l nonsynonymous SNV uc008yti.1:c.G676A:p.G226R exonic ENSMUSG00000058153 nonsynonymous SNV ENSMUST00000075387:c.G2011A:p.G671R 5qF NA NA chr5 112869855 ATCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 34 0 0 32.08374 0.785714 0.02 -0.122758 3 11 83 300 60 60 0 0 CC 4.812874 16 0 450 0 KEEP - Sez6l YES MNNG_4 chr5 114188079 114188079 G A exonic Ficd nonsynonymous SNV NM_001010825:c.G305A:p.G102E exonic Ficd nonsynonymous SNV uc008yyl.2:c.G305A:p.G102E exonic ENSMUSG00000053334 nonsynonymous SNV ENSMUST00000065698:c.G305A:p.G102E 5qF NA NA chr5 114188079 CAGxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 212 0 0 107.922662 0.462366 0.02 0.773155 50 43 1376 1153 60 60 0 0 GG 26.168008 87 0 2430 0 KEEP + Ficd YES MNNG_4 chr5 114392377 114392377 C T exonic Ssh1 synonymous SNV NM_198109:c.G3000A:p.K1000K exonic Ssh1 synonymous SNV uc008yyx.1:c.G2871A:p.K957K exonic ENSMUSG00000042121 synonymous SNV ENSMUST00000077689:c.G2871A:p.K957K 5qF NA NA chr5 114392377 ACAxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 176 2 0 80.932677 0.478873 0.02 0.869096 37 34 1008 861 60 60 0 0 CC 23.16142 77 0 2163 0 KEEP - Ssh1 YES MNNG_4 chr5 114400411 114400411 C T exonic Ssh1 nonsynonymous SNV NM_198109:c.G1333A:p.G445S exonic Ssh1 nonsynonymous SNV uc008yyx.1:c.G1204A:p.G402S exonic ENSMUSG00000042121 nonsynonymous SNV ENSMUST00000077689:c.G1204A:p.G402S 5qF NA NA chr5 114400411 TGCxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 171 1 0 66.650625 0.421875 0.02 1.03617 37 27 1025 727 60 60 0 0 CC 24.064655 80 0 2262 0 KEEP - Ssh1 YES MNNG_4 chr5 114485182 114485182 G A exonic Svop nonsynonymous SNV NM_026805:c.C1136T:p.T379I exonic Svop nonsynonymous SNV uc008yzb.1:c.C1136T:p.T379I exonic ENSMUSG00000042078 nonsynonymous SNV ENSMUST00000058472:c.C1136T:p.T379I 5qF NA NA chr5 114485182 GTGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 204 2 0 94.417176 0.434783 0.02 0.693579 52 40 1363 1027 60 60 0 0 GG 23.440351 78 0 2112 0 KEEP - Svop YES MNNG_4 chr5 114694501 114694501 G A exonic Acacb synonymous SNV NM_133904:c.G6240A:p.G2080G exonic Acacb synonymous SNV uc008yzj.2:c.G4122A:p.G1374G exonic ENSMUSG00000042010 synonymous SNV ENSMUST00000031583:c.G6240A:p.G2080G 5qF NA NA chr5 114694501 GGGxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.422559 0.423478 0.997832 45 0 0 28.346346 0.52381 0.02 -0.183874 10 11 255 294 60 60 0 0 GG 4.812897 16 0 451 0 KEEP + Acacb YES MNNG_4 chr5 114695969 114695969 C T exonic Acacb synonymous SNV NM_133904:c.C6549T:p.I2183I exonic Acacb synonymous SNV uc008yzj.2:c.C4431T:p.I1477I exonic ENSMUSG00000042010 synonymous SNV ENSMUST00000031583:c.C6549T:p.I2183I 5qF NA NA chr5 114695969 CATxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 214 0 0 97.66681 0.43956 0.02 0.799454 51 40 1419 1057 60 60 0 0 CC 30.07343 100 0 2816 0 KEEP + Acacb YES MNNG_4 chr5 114705516 114705516 G A exonic Foxn4 nonsynonymous SNV NM_148935:c.C1550T:p.P517L exonic Foxn4 nonsynonymous SNV uc008yzk.1:c.C1550T:p.P517L exonic ENSMUSG00000042002 nonsynonymous SNV ENSMUST00000044790:c.C1550T:p.P517L 5qF NA NA chr5 114705516 ATAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 91 2 0 43.726111 0.428571 0.02 -0.368264 24 18 668 476 60 60 0 0 GG 11.730241 39 0 1108 0 KEEP - Foxn4 YES MNNG_4 chr5 114799603 114799603 G A exonic Myo1h nonsynonymous SNV NM_001164573:c.G1858A:p.A620T exonic Myo1h nonsynonymous SNV uc012ebt.1:c.G1858A:p.A620T exonic ENSMUSG00000066952 nonsynonymous SNV ENSMUST00000124316:c.G1858A:p.A620T 5qF NA NA chr5 114799603 AGGxCGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 259 0 0 124.268108 0.464286 0.02 2.018611 60 52 1614 1331 60 60 0 0 GG 33.082824 110 0 3041 0 KEEP + Myo1h YES MNNG_4 chr5 115187381 115187381 C T exonic Git2 stopgain SNV NM_019834:c.G1554A:p.W518X exonic Git2 stopgain SNV uc008yzz.1:c.G1554A:p.W518X exonic ENSMUSG00000041890 stopgain SNV ENSMUST00000112185:c.G1554A:p.W518X 5qF NA NA chr5 115187381 GGAxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 53 0 0 23.784315 0.454545 0.02 -0.201624 12 10 316 256 60 60 0 0 CC 6.315912 21 0 576 0 KEEP - Git2 YES MNNG_4 chr5 115187384 115187384 G A exonic Git2 synonymous SNV NM_019834:c.C1551T:p.S517S exonic Git2 synonymous SNV uc008yzz.1:c.C1551T:p.S517S exonic ENSMUSG00000041890 synonymous SNV ENSMUST00000112185:c.C1551T:p.S517S 5qF NA NA chr5 115187384 CCAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490485 0.490544 0.999879 55 0 0 25.286038 0.454545 0.02 -0.201662 12 10 327 271 60 60 0 0 GG 6.617884 22 0 623 0 KEEP - Git2 YES MNNG_4 chr5 115405209 115405209 C T intronic Hnf1a NA NA intronic Hnf1a NA NA intronic ENSMUSG00000029556 NA NA 5qF NA NA chr5 115405209 CCCxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 74 0 0 40.289794 0.444444 0.02 -0.315662 20 16 550 434 60 60 0 0 CC 9.923248 33 0 910 0 KEEP - Hnf1a YES MNNG_4 chr5 115600188 115600188 C T intronic Mlec NA NA intronic Mlec NA NA intronic ENSMUSG00000048578 NA NA 5qF NA NA chr5 115600188 CCTxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 182 0 0 108.039863 0.478723 0.02 0.676497 49 45 1345 1149 60 60 0 0 CC 22.250721 74 0 2062 0 KEEP - Mlec YES MNNG_4 chr5 115622759 115622759 C T intronic Cabp1 NA NA ncRNA_intronic CABP1Lb NA NA intronic ENSMUSG00000029544 NA NA 5qF NA NA chr5 115622759 AGCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 265 0 0 103.856214 0.506173 0.02 0.87849 40 41 1092 1087 60 60 0 0 CC 44.494458 148 0 4099 0 KEEP - Cabp1 YES MNNG_4 chr5 116044118 116044118 C T exonic Gcn1l1 synonymous SNV NM_172719:c.C2982T:p.Y994Y exonic Gcn1l1 synonymous SNV uc008zeg.1:c.C2982T:p.Y994Y exonic ENSMUSG00000041638 synonymous SNV ENSMUST00000064454:c.C2982T:p.Y994Y 5qF NA NA chr5 116044118 CTAxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 117 0 0 88.013227 0.569231 0.02 0.826192 28 37 738 898 60 60 0 0 CC 12.931971 43 0 1166 0 KEEP + Gcn1l1 YES MNNG_4 chr5 116053393 116053393 G A intronic Gcn1l1 NA NA intronic Gcn1l1 NA NA intronic ENSMUSG00000041638 NA NA 5qF NA NA chr5 116053393 GGAxGGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.384517 0.387407 0.99254 31 0 0 22.514738 0.45 0.02 -0.175349 11 9 296 242 60 60 0 0 GG 2.706996 9 0 249 0 KEEP + Gcn1l1 YES MNNG_4 chr5 117643721 117643721 C T UTR5 Taok3 NA NA UTR5 Taok3 NA NA UTR5 ENSMUSG00000061288 NA NA 5qF NA NA chr5 117643721 CACxGGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 145 0 0 76.877311 0.47619 0.02 1.036301 33 30 861 815 60 60 0 0 CC 19.222885 64 0 1657 0 KEEP + Taok3 YES MNNG_4 chr5 117802781 117802781 G A exonic Vsig10 nonsynonymous SNV NM_001033311:c.G1643A:p.S548N exonic "BC023744,Vsig10" nonsynonymous SNV uc008zfp.1:c.G785A:p.S262N exonic ENSMUSG00000066894 nonsynonymous SNV ENSMUST00000086464:c.G1562A:p.S521N 5qF NA NA chr5 117802781 AGAxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 149 0 0 32.048575 0.341463 0.02 -0.376892 27 14 714 368 60 60 0 0 GG 20.152685 67 0 1872 0 KEEP + Vsig10 YES MNNG_4 chr5 117820975 117820975 G A intronic Wsb2 NA NA intronic Wsb2 NA NA intronic ENSMUSG00000029364 NA NA 5qF NA NA chr5 117820975 AGGxCGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 232 0 0 108.047307 0.428571 0.02 2.054043 60 45 1586 1177 60 60 0 0 GG 32.404033 108 0 2917 0 KEEP + Wsb2 YES MNNG_4 chr5 117826709 117826709 G A exonic Wsb2 synonymous SNV NM_021539:c.G954A:p.R318R exonic Wsb2 synonymous SNV uc008zfr.1:c.G960A:p.R320R exonic ENSMUSG00000029364 synonymous SNV ENSMUST00000111959:c.G960A:p.R320R 5qF NA NA chr5 117826709 CAGxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 117 0 0 81.089989 0.5 0.02 1.036204 32 32 883 851 60 60 0 0 GG 12.333565 41 0 1165 0 KEEP + Wsb2 YES MNNG_4 chr5 121059837 121059837 C T exonic 1110008J03Rik nonsynonymous SNV NM_029096:c.G404A:p.S135N exonic 1110008J03Rik nonsynonymous SNV uc008zhp.2:c.G404A:p.S135N exonic ENSMUSG00000029600 nonsynonymous SNV ENSMUST00000031599:c.G404A:p.S135N 5qF NA NA chr5 121059837 TGGxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 87 0 0 31.829874 0.35 0.02 -0.350701 26 14 717 364 60 60 0 0 CC 10.828414 36 0 1008 0 KEEP - 1110008J03Rik YES MNNG_4 chr5 121185093 121185093 G A exonic Oas2 synonymous SNV NM_145227:c.C1905T:p.D635D exonic Oas2 synonymous SNV uc008zhv.2:c.C123T:p.D41D exonic ENSMUSG00000032690 synonymous SNV ENSMUST00000053909:c.C1905T:p.D635D 5qF NA NA chr5 121185093 CAGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 158 1 0 78.697674 0.428571 0.02 0.824947 44 33 1183 858 60 60 0 0 GG 18.945377 63 0 1724 0 KEEP - Oas2 YES MNNG_4 chr5 121614591 121614591 G A exonic Ptpn11 synonymous SNV NM_001109992:c.C438T:p.D146D exonic Ptpn11 synonymous SNV uc008zio.2:c.C438T:p.D146D exonic ENSMUSG00000043733 synonymous SNV ENSMUST00000054547:c.C438T:p.D146D 5qF NA NA chr5 121614591 GAAxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16171 0.162467 0.995343 30 0 0 23.298293 0.692308 0.02 -0.113926 4 9 108 225 60 60 0 0 GG 4.210671 14 0 385 0 KEEP - Ptpn11 YES MNNG_4 chr5 121658405 121658405 C T exonic Rpl6 nonsynonymous SNV NM_011290:c.C559T:p.L187F exonic Rpl6 nonsynonymous SNV uc008ziq.3:c.C559T:p.L187F exonic ENSMUSG00000029614 nonsynonymous SNV ENSMUST00000031617:c.C559T:p.L187F 5qF NA NA chr5 121658405 CCTxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 260 1 2 122.687799 0.505263 0.02 0.76436 47 48 1309 1284 60 60 0 0 CC 37.895547 126 0 3604 0 KEEP + Rpl6 YES MNNG_4 chr5 123123728 123123728 G A exonic P2rx7 synonymous SNV NM_001038839:c.G1092A:p.R364R exonic P2rx7 synonymous SNV uc008zlp.1:c.G1092A:p.R364R exonic ENSMUSG00000029468 synonymous SNV ENSMUST00000031425:c.G1092A:p.R364R 5qF NA NA chr5 123123728 CAGxTCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 143 0 0 75.817392 0.492063 0.02 0.947749 32 31 841 800 60 60 0 0 GG 17.745236 59 0 1625 0 KEEP + P2rx7 YES MNNG_4 chr5 123594221 123594221 G A exonic Setd1b synonymous SNV NM_001040398:c.G402A:p.L134L exonic Setd1b synonymous SNV uc008znf.1:c.G402A:p.L134L exonic ENSMUSG00000038384 synonymous SNV ENSMUST00000056053:c.G402A:p.L134L 5qF NA NA chr5 123594221 CTTxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 87 0 0 40.973305 0.515152 0.02 -0.298056 16 17 430 428 60 60 0 0 GG 12.333482 41 0 1167 0 KEEP + Setd1b YES MNNG_4 chr5 124863166 124863166 G A intronic Sbno1 NA NA intronic Sbno1 NA NA intronic ENSMUSG00000038095 NA NA 5qF NA NA chr5 124863166 TTAxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 199 1 0 79.537736 0.470588 0.02 1.001137 36 32 994 847 60 60 0 0 GG 33.393484 111 0 3209 0 KEEP - Sbno1 YES MNNG_4 chr5 124919723 124919723 G A exonic Rilpl2 synonymous SNV NM_030259:c.C442T:p.L148L exonic Rilpl2 synonymous SNV uc008zpx.1:c.C442T:p.L148L exonic ENSMUSG00000029401 synonymous SNV ENSMUST00000031347:c.C442T:p.L148L 5qF NA NA chr5 124919723 GCAxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 159 0 0 94.035537 0.506667 0.02 0.816177 37 38 1016 985 60 60 0 0 GG 17.434926 58 0 1629 0 KEEP - Rilpl2 YES MNNG_4 chr5 125519325 125519325 G A exonic Ncor2 nonsynonymous SNV NM_001253905:c.C2536T:p.P846S exonic Ncor2 nonsynonymous SNV uc008zrb.1:c.C1435T:p.P479S exonic ENSMUSG00000029478 nonsynonymous SNV ENSMUST00000134404:c.C1435T:p.P479S 5qG1.1 NA NA chr5 125519325 GTGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.908987 0.909069 0.999909 72 0 0 54.282942 0.511628 0.02 -0.375337 21 22 556 567 60 60 0 0 GG 7.213156 24 0 656 0 KEEP - Ncor2 YES MNNG_4 chr5 125870111 125870111 G A intronic Ubc NA NA UTR5 "Uba52,Ubb,Ubc" NA NA exonic ENSMUSG00000072612 synonymous SNV ENSMUST00000100700:c.G420A:p.Q140Q 5qG1.1 NA NA chr5 125870111 GCAxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457701 0.457757 0.999879 55 0 0 17.852588 0.363636 0.02 -0.192862 14 8 372 203 60 60 0 0 GG 6.61672 22 0 603 0 KEEP - Ubc YES MNNG_4 chr5 128264750 128264750 G A exonic Tmem132d synonymous SNV NM_172885:c.C2676T:p.L892L exonic Tmem132d synonymous SNV uc008zse.1:c.C2676T:p.L892L exonic ENSMUSG00000034310 synonymous SNV ENSMUST00000044441:c.C2676T:p.L892L 5qG1.2 NA NA chr5 128264750 GGGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 124 0 0 80.254619 0.471429 0.02 0.984362 37 33 1011 856 60 60 0 0 GG 13.227508 44 0 1229 0 KEEP - Tmem132d YES MNNG_4 chr5 129303118 129303118 G A exonic Rimbp2 nonsynonymous SNV NM_001081388:c.C1304T:p.T435I exonic Rimbp2 nonsynonymous SNV uc008zsk.2:c.C1283T:p.T428I exonic ENSMUSG00000029420 nonsynonymous SNV ENSMUST00000031370:c.C1283T:p.T428I 5qG1.3 NA NA chr5 129303118 TTGxTCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 107 2 0 56.719833 0.470588 0.02 1.052968 27 24 726 606 60 60 0 0 GG 13.830332 46 0 1266 0 KEEP - Rimbp2 YES MNNG_4 chr5 130049159 130049159 G A exonic Sfswap nonsynonymous SNV NM_172276:c.G1616A:p.G539D exonic "Sfswap,Srsf8" nonsynonymous SNV uc008zsu.1:c.G1238A:p.G413D exonic ENSMUSG00000029439 nonsynonymous SNV ENSMUST00000053737:c.G1616A:p.G539D 5qG1.3 NA NA chr5 130049159 ACGxCGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999998 85 0 0 52.817679 0.55 0.02 -0.35057 18 22 493 543 60 60 0 0 GG 9.863401 33 0 890 0 KEEP + Sfswap YES MNNG_4 chr5 130338613 130338613 G A UTR3 Sumf2 NA NA UTR3 Sumf2 NA NA UTR3 ENSMUSG00000025538 NA NA 5qG1.3 NA NA chr5 130338613 CGAxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 258 2 0 123.961541 0.480769 0.02 2.176764 54 50 1489 1314 60 60 0 0 GG 35.793402 119 0 3382 0 KEEP + Sumf2 YES MNNG_4 chr5 134723074 134723074 G A intronic Gtf2i NA NA intronic Gtf2i NA NA intronic ENSMUSG00000060261 NA NA 5qG2 NA NA chr5 134723074 GGCxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 125 1 0 72.480063 0.538462 0.02 1.12422 24 28 550 747 60 60 0 0 GG 14.262264 52 1 1253 12 KEEP - Gtf2i YES MNNG_4 chr5 135858318 135858318 G A exonic Pom121 synonymous SNV NM_148932:c.C1854T:p.P618P exonic Pom121 synonymous SNV uc008zyi.1:c.C1854T:p.P618P exonic ENSMUSG00000053293 synonymous SNV ENSMUST00000065638:c.C1851T:p.P617P 5qG2 NA NA chr5 135858318 TAGxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227714 0.229173 0.993634 29 0 0 24.105796 0.6 0.02 -0.131523 6 9 166 242 60 60 0 0 GG 3.60977 12 0 340 0 KEEP - Pom121 YES MNNG_4 chr5 136625221 136625221 G A UTR3 Orai2 NA NA UTR3 Orai2 NA NA UTR3 ENSMUSG00000039747 NA NA 5qG2 "Score=0.98725;Name=No.63456,chr16:59457742" NA chr5 136625221 GCTxCCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.780565 0.78106 0.999366 63 0 4 28.875117 0.382353 0.02 -0.298079 21 13 580 325 60 46 0 0 GG 5.714221 19 0 533 0 KEEP - Orai2 YES MNNG_4 chr5 137458564 137458564 G A intronic Znhit1 NA NA intronic Znhit1 NA NA intronic ENSMUSG00000059518 NA NA 5qG2 NA NA chr5 137458564 CAAxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 109 0 0 68.619278 0.541667 0.02 -0.429646 22 26 603 706 60 60 0 0 GG 15.933531 53 0 1483 0 KEEP - Znhit1 YES MNNG_4 chr5 137519124 137519124 G A intronic Ap1s1 NA NA intronic Ap1s1 NA NA intronic ENSMUSG00000004849 NA NA 5qG2 NA NA chr5 137519124 GAGxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.551689 0.552887 0.997832 45 0 0 33.283164 0.52 0.02 -0.219145 12 13 320 346 60 60 0 0 GG 4.805658 16 0 439 0 KEEP - Ap1s1 YES MNNG_4 chr5 137521913 137521913 G A UTR5 Ap1s1 NA NA UTR5 Ap1s1 NA NA UTR5 ENSMUSG00000004849 NA NA 5qG2 NA NA chr5 137521913 TCCxGCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 39 2 0 11.22604 0.357143 0.02 -0.122563 9 5 223 128 60 60 0 0 GG 5.111984 17 0 458 0 KEEP - Ap1s1 YES MNNG_4 chr5 137806189 137806189 G A exonic Ephb4 stopgain SNV NM_001159571:c.G1629A:p.W543X exonic Ephb4 stopgain SNV uc009ach.2:c.G1629A:p.W543X exonic ENSMUSG00000029710 stopgain SNV ENSMUST00000061244:c.G1602A:p.W534X 5qG2 NA NA chr5 137806189 CTGxCGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 621 0 0 322.817371 0.526104 0.02 3.808376 118 131 3205 3352 60 60 0 0 GG 82.332335 274 0 7477 0 KEEP + Ephb4 YES MNNG_4 chr5 137861201 137861201 G A exonic Zan synonymous SNV NM_011741:c.C8862T:p.I2954I exonic Zan synonymous SNV uc012eey.1:c.C8862T:p.I2954I exonic ENSMUSG00000079173 synonymous SNV ENSMUST00000164178:c.C8862T:p.I2954I 5qG2 NA NA chr5 137861201 CTGxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 97 0 0 44.742359 0.5 0.02 -0.315638 18 18 500 470 60 60 0 0 GG 13.537072 45 0 1284 0 KEEP - Zan YES MNNG_4 chr5 137905126 137905126 G A exonic Zan synonymous SNV NM_011741:c.C3018T:p.S1006S exonic Zan synonymous SNV uc012eey.1:c.C3018T:p.S1006S exonic ENSMUSG00000079173 synonymous SNV ENSMUST00000164178:c.C3018T:p.S1006S 5qG2 NA NA chr5 137905126 GATxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 875 3 39 139.674972 0.294118 0.02 4.71299 168 70 4574 1689 60 60 0 0 GG 138.014779 459 0 12803 0 KEEP - Zan YES MNNG_4 chr5 138038304 138038304 G A intronic Mospd3 NA NA intronic Mospd3 NA NA intronic ENSMUSG00000037221 NA NA 5qG2 NA NA chr5 138038304 AGAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.55282 0.552887 0.999879 53 0 0 27.097597 0.44 0.02 -0.219207 14 11 389 293 60 60 0 0 GG 6.563195 22 0 595 0 KEEP - Mospd3 YES MNNG_4 chr5 138174311 138174311 G T exonic Nyap1 nonsynonymous SNV NM_175521:c.C2218A:p.P740T exonic 6430598A04Rik nonsynonymous SNV uc009adq.1:c.C2218A:p.P740T exonic ENSMUSG00000045348 nonsynonymous SNV ENSMUST00000118326:c.C2218A:p.P740T 5qG2 NA NA chr5 138174311 AGGxCCG G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 122 0 0 64.59312 0.4375 0.02 0.939002 36 28 982 703 60 60 0 0 GG 12.606709 42 0 1148 0 KEEP - Nyap1 NO MNNG_4 chr5 138534582 138534582 G A exonic Zkscan1 synonymous SNV NM_029869:c.G348A:p.L116L exonic Zkscan1 synonymous SNV uc009ael.1:c.G345A:p.L115L exonic ENSMUSG00000029729 synonymous SNV ENSMUST00000110962:c.G348A:p.L116L 5qG2 NA NA chr5 138534582 GCTxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 63 0 0 44.490978 0.68 0.02 -0.219158 8 17 221 432 60 60 0 0 GG 9.003757 30 0 823 0 KEEP + Zkscan1 YES MNNG_4 chr5 139005445 139005445 G A exonic 1700123K08Rik synonymous SNV NM_029693:c.C261T:p.L87L exonic 1700123K08Rik synonymous SNV uc009afp.1:c.C261T:p.L87L exonic ENSMUSG00000029526 synonymous SNV ENSMUST00000031501:c.C261T:p.L87L 5qG2 "Score=0.908271;Name=No.91766,chr7:49698124" NA chr5 139005445 ACAxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 271 0 0 117.625381 0.484536 0.02 0.72054 50 47 1395 1244 60 60 0 0 GG 43.897204 146 0 4156 0 KEEP - 1700123K08Rik YES MNNG_4 chr5 140212118 140212118 G T UTR5 Micall2 NA NA UTR5 Micall2 NA NA UTR5 ENSMUSG00000036718 NA NA 5qG2 NA NA chr5 140212118 ATGxGCG G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 77 0 0 38.887927 0.444444 0.02 -0.315642 20 16 551 420 60 60 0 0 GG 8.422512 28 0 787 0 KEEP - Micall2 NO MNNG_4 chr5 141094118 141094118 G A intergenic "Lfng(dist=2619),Ttyh3(dist=2414)" NA NA intergenic "Lfng(dist=2619),Ttyh3(dist=2414)" NA NA intergenic "ENSMUSG00000029570(dist=2621),ENSMUSG00000036565(dist=2422)" NA NA 5qG2 NA NA chr5 141094118 GCTxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 89 0 0 55.758461 0.488889 0.02 -0.394311 23 22 619 588 60 60 0 0 GG 11.129098 37 0 1033 0 KEEP NA Lfng YES MNNG_4 chr5 141188880 141188880 G A intronic Brat1 NA NA intronic AA881470 NA NA intronic ENSMUSG00000000148 NA NA 5qG2 NA NA chr5 141188880 AGCxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967423 0.967425 0.999997 95 2 0 78.948084 0.607843 0.02 1.044314 20 31 483 790 60 60 0 0 GG 9.319355 31 0 808 0 KEEP + Brat1 YES MNNG_4 chr5 142435202 142435202 G A exonic Sdk1 synonymous SNV NM_177879:c.G1701A:p.V567V exonic Sdk1 synonymous SNV uc009ain.2:c.G921A:p.V307V exonic ENSMUSG00000039683 synonymous SNV ENSMUST00000074546:c.G921A:p.V307V 5qG2 NA NA chr5 142435202 GGTxATT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 193 1 0 100.088154 0.540541 0.02 1.046469 34 40 944 1032 60 60 0 0 GG 25.557903 85 0 2413 0 KEEP + Sdk1 YES MNNG_4 chr5 142634514 142634514 G A exonic Sdk1 nonsynonymous SNV NM_177879:c.G5074A:p.V1692M exonic Sdk1 nonsynonymous SNV uc009ain.2:c.G4294A:p.V1432M exonic ENSMUSG00000039683 nonsynonymous SNV ENSMUST00000074546:c.G4294A:p.V1432M 5qG2 NA NA chr5 142634514 CAGxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 88 0 0 48.276194 0.5 0.02 -0.350464 20 20 534 508 60 60 0 0 GG 10.82117 36 0 991 0 KEEP + Sdk1 YES MNNG_4 chr5 144025683 144025683 G A intronic Zfp316 NA NA intronic Zfp316 NA NA intronic ENSMUSG00000046658 NA NA 5qG2 NA NA chr5 144025683 ACAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.551689 0.552887 0.997832 42 1 0 36.926394 0.56 0.02 -0.219208 11 14 306 377 60 60 0 0 GG 4.813054 16 0 454 0 KEEP - Zfp316 YES MNNG_4 chr5 145586144 145586144 G A exonic Trrap nonsynonymous SNV NM_001081362:c.G6952A:p.V2318M exonic Trrap nonsynonymous SNV uc009alu.1:c.G3088A:p.V1030M exonic ENSMUSG00000045482 nonsynonymous SNV ENSMUST00000038980:c.G6952A:p.V2318M 5qG2 NA NA chr5 145586144 GCGxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 139 2 0 68.824109 0.528302 0.02 1.123996 25 28 662 714 60 60 0 0 GG 18.31859 61 0 1646 0 KEEP + Trrap YES MNNG_4 chr5 145766109 145766109 G A intronic Kpna7 NA NA intronic Kpna7 NA NA intronic ENSMUSG00000038770 NA NA 5qG2 NA NA chr5 145766109 AATxCGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.999859 30 0 0 21.535514 0.8 0.02 -0.087649 2 8 54 199 60 60 0 0 GG 5.413527 18 0 490 0 KEEP - Kpna7 YES MNNG_4 chr5 145781113 145781113 G A intergenic "Kpna7(dist=10608),Gm4871(dist=9356)" NA NA intergenic "Kpna7(dist=10608),Gm4871(dist=9356)" NA NA intronic ENSMUSG00000038770 NA NA 5qG2 "Score=0.922503;Name=No.91025,chr5:145766936" NA chr5 145781113 TCAxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 96 0 3 26.851482 0.342857 0.02 -0.306848 23 12 620 309 60 60 0 0 GG 13.533281 45 0 1245 0 KEEP NA Kpna7 YES MNNG_4 chr5 149043377 149043377 G A exonic Mtus2 synonymous SNV NM_029920:c.G2823A:p.R941R exonic "C130038G02Rik,Mtus2" synonymous SNV uc009aoo.1:c.G579A:p.R193R exonic ENSMUSG00000029651 synonymous SNV ENSMUST00000085558:c.G2823A:p.R941R 5qG3 NA NA chr5 149043377 GAGxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 68 4 0 21.963092 0.428571 0.02 -0.184131 12 9 333 239 60 60 0 0 GG 10.820284 36 0 1011 0 KEEP + Mtus2 YES MNNG_4 chr5 151184203 151184203 G A exonic Fry synonymous SNV NM_172887:c.G1797A:p.K599K exonic Fry synonymous SNV uc009att.1:c.G1788A:p.K596K exonic ENSMUSG00000056602 synonymous SNV ENSMUST00000045502:c.G1788A:p.K596K 5qG3 NA NA chr5 151184203 AAAxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 122 2 0 58.438707 0.444444 0.02 1.026717 30 24 829 631 60 60 0 0 GG 15.021642 50 0 1421 0 KEEP + Fry YES MNNG_4 chr5 151320623 151320623 G A exonic Zar1l nonsynonymous SNV NM_001159693:c.C112T:p.P38S exonic Zar1l nonsynonymous SNV uc012ehm.1:c.C112T:p.P38S exonic ENSMUSG00000056586 nonsynonymous SNV ENSMUST00000118769:c.C112T:p.P38S 5qG3 NA NA chr5 151320623 TGGxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 96 1 0 76.64227 0.566038 0.02 1.035418 23 30 624 781 60 60 0 0 GG 9.277134 31 0 846 0 KEEP - Zar1l YES MNNG_4 chr5 20040210 20040210 C T exonic Magi2 nonsynonymous SNV NM_001170745:c.C1643T:p.A548V exonic Magi2 nonsynonymous SNV uc008wnx.1:c.C962T:p.A321V exonic ENSMUSG00000040003 nonsynonymous SNV ENSMUST00000167357:c.C962T:p.A321V 5qA3 NA NA chr5 20040210 CGGxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 250 2 0 102.916443 0.518072 0.02 0.764434 40 43 1052 1074 60 60 0 0 CC 39.693161 132 0 3614 0 KEEP + Magi2 YES MNNG_4 chr5 20493206 20493206 C T UTR3 Ptpn12 NA NA UTR3 Ptpn12 NA NA UTR3 ENSMUSG00000028771 NA NA 5qA3 NA NA chr5 20493206 GCAxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 83 0 0 30.194407 0.325581 0.02 -0.376968 29 14 778 353 60 60 0 0 CC 8.721632 29 0 790 0 KEEP - Ptpn12 YES MNNG_4 chr5 21317066 21317066 C T exonic Slc26a5 nonsynonymous SNV NM_030727:c.G2135A:p.G712D exonic Slc26a5 nonsynonymous SNV uc008wpe.1:c.G1337A:p.G446D exonic ENSMUSG00000029015 nonsynonymous SNV ENSMUST00000127975:c.G2039A:p.G680D 5qA3 NA NA chr5 21317066 CTGxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.518837 0.522161 0.993634 39 0 0 42.688809 0.666667 0.02 -0.210416 8 16 223 417 60 60 0 0 CC 3.608795 12 0 328 0 KEEP - Slc26a5 YES MNNG_4 chr5 23491943 23491943 C T intronic Fam126a NA NA intronic Fam126a NA NA intronic ENSMUSG00000028995 NA NA 5qA3 NA NA chr5 23491943 TGCxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999997 64 0 0 21.030294 0.333333 0.02 -0.263038 18 9 488 242 70 60 0 0 CC 9.626 32 0 907 0 KEEP - Fam126a YES MNNG_4 chr5 23935541 23935541 C T exonic Slc4a2 synonymous SNV NM_001253892:c.C234T:p.H78H exonic Slc4a2 synonymous SNV uc008wrm.2:c.C234T:p.H78H exonic ENSMUSG00000028962 synonymous SNV ENSMUST00000115047:c.C192T:p.H64H 5qA3 NA NA chr5 23935541 CCAxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 163 0 0 74.055662 0.555556 0.02 1.124843 24 30 624 759 60 60 0 0 CC 24.947278 83 0 2259 0 KEEP + Slc4a2 YES MNNG_4 chr5 23935753 23935753 C T exonic Slc4a2 nonsynonymous SNV NM_001253892:c.C446T:p.P149L exonic Slc4a2 nonsynonymous SNV uc008wrm.2:c.C446T:p.P149L exonic ENSMUSG00000028962 nonsynonymous SNV ENSMUST00000115047:c.C404T:p.P135L 5qA3 NA NA chr5 23935753 CACxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 363 1 0 142.23876 0.448819 0.02 2.072376 70 57 1923 1530 60 60 0 0 CC 52.173695 178 1 4964 12 KEEP + Slc4a2 YES MNNG_4 chr5 28533568 28533568 A G exonic Cnpy1 nonsynonymous SNV NM_175651:c.T506C:p.I169T exonic Cnpy1 nonsynonymous SNV uc008wtx.1:c.T506C:p.I169T exonic ENSMUSG00000044681 nonsynonymous SNV ENSMUST00000117098:c.T506C:p.I169T 5qB1 NA NA chr5 28533568 AAAxTCA A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 80 0 0 12.046614 0.162162 0.02 -0.324338 31 6 799 163 60 60 0 0 AA 10.52731 35 0 970 0 KEEP - Cnpy1 NO MNNG_4 chr5 30062333 30062333 C T ncRNA_exonic Gm5129 NA NA ncRNA_exonic Gm5129 NA NA exonic ENSMUSG00000053121 synonymous SNV ENSMUST00000065372:c.G144A:p.R48R 5qB1 NA NA chr5 30062333 CGCxCTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 185 0 0 143.270149 0.572917 0.02 0.755806 41 55 1117 1455 60 60 0 0 CC 20.451572 68 0 1884 0 KEEP - Gm5129 YES MNNG_4 chr5 31390778 31390778 C T exonic Slc30a3 synonymous SNV NM_011773:c.G783A:p.Q261Q exonic Slc30a3 synonymous SNV uc008wxa.2:c.G783A:p.Q261Q exonic ENSMUSG00000029151 synonymous SNV ENSMUST00000031037:c.G783A:p.Q261Q 5qB1 NA NA chr5 31390778 GTAxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.999859 46 2 0 21.230089 0.409091 0.02 -0.192806 13 9 353 234 60 60 0 0 CC 5.415102 18 0 519 0 KEEP - Slc30a3 YES MNNG_4 chr5 31596176 31596176 C T exonic Fndc4 synonymous SNV NM_022424:c.G543A:p.G181G exonic Fndc4 synonymous SNV uc008wyd.1:c.G543A:p.G181G exonic ENSMUSG00000038552 synonymous SNV ENSMUST00000041266:c.G543A:p.G181G 5qB1 NA NA chr5 31596176 TAGxCCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 219 0 0 157.509637 0.552632 0.02 1.992649 51 63 1368 1616 60 60 0 0 CC 27.955666 93 0 2559 0 KEEP - Fndc4 YES MNNG_4 chr5 33079888 33079888 C T exonic Pisd nonsynonymous SNV NM_177298:c.G1211A:p.G404D exonic Pisd nonsynonymous SNV uc008wzw.1:c.G770A:p.G257D exonic "ENSMUSG00000023452,ENSMUSG00000054280" nonsynonymous SNV ENSMUST00000077550:c.G770A:p.G257D 5qB1 "Score=0.945078;Name=No.67239,chr17:3076171" NA chr5 33079888 GAGxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120428 0.120436 0.999931 43 0 0 14.26493 0.545455 0.02 -0.096414 5 6 138 147 60 60 0 0 CC 7.492413 25 0 662 0 KEEP - Pisd YES MNNG_4 chr5 33995102 33995102 C T upstream;downstream Slbp;Tmem129 NA NA upstream;downstream Slbp;Tmem129 NA NA UTR5 ENSMUSG00000004642 NA NA 5qB2 NA NA chr5 33995102 CCGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.486885 0.490544 0.99254 35 0 0 19.904417 0.391304 0.02 -0.201627 14 9 381 223 60 60 0 0 CC 2.706794 9 0 246 0 KEEP NA Slbp YES MNNG_4 chr5 35422074 35422074 C T exonic Dok7 synonymous SNV NM_172708:c.C1056T:p.C352C exonic Dok7 synonymous SNV uc008xdn.1:c.C594T:p.C198C exonic ENSMUSG00000044716 synonymous SNV ENSMUST00000101298:c.C735T:p.C245C 5qB2 NA NA chr5 35422074 CTGxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 85 0 0 49.815776 0.512195 0.02 -0.3571 20 21 519 522 60 60 0 0 CC 9.022094 30 0 818 0 KEEP + Dok7 YES MNNG_4 chr5 36192187 36192187 C T exonic Ablim2 synonymous SNV NM_001177700:c.C1296T:p.I432I exonic Ablim2 synonymous SNV uc008xeg.2:c.C1296T:p.I432I exonic ENSMUSG00000029095 synonymous SNV ENSMUST00000114203:c.C498T:p.I166I 5qB3 NA NA chr5 36192187 CATxTAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 215 0 0 124.174123 0.5 0.02 0.729637 49 49 1332 1303 60 60 0 0 CC 27.074728 90 0 2587 0 KEEP + Ablim2 YES MNNG_4 chr5 38919020 38919020 T A UTR3 Wdr1 NA NA UTR3 Wdr1 NA NA UTR3 ENSMUSG00000005103 NA NA 5qB3 NA NA chr5 38919020 GATxCGG T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 178 0 0 72.733103 0.421053 0.02 0.835167 44 32 1146 799 60 60 0 0 TT 21.315011 71 0 1934 0 KEEP - Wdr1 NO MNNG_4 chr5 48616066 48616066 C T intronic Slit2 NA NA intronic Slit2 NA NA intronic ENSMUSG00000031558 NA NA 5qB3 NA NA chr5 48616066 AATxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490475 0.490544 0.999859 44 0 0 34.031984 0.590909 0.02 -0.192886 9 13 247 343 60 60 0 0 CC 5.414589 18 0 509 0 KEEP + Slit2 YES MNNG_4 chr5 53459352 53459352 T C intronic Slc34a2 NA NA intronic Slc34a2 NA NA intronic ENSMUSG00000029188 NA NA 5qC1 NA NA chr5 53459352 TTCxTTC T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 211 0 0 9.50927 0.061856 0.02 0.74698 91 6 2462 164 60 60 0 0 TT 24.666362 82 0 2314 0 KEEP + Slc34a2 NO MNNG_4 chr5 65318339 65318339 C T exonic Tlr1 nonsynonymous SNV NM_030682:c.G133A:p.D45N exonic Tlr1 nonsynonymous SNV uc008xmv.1:c.G133A:p.D45N exonic ENSMUSG00000044827 nonsynonymous SNV ENSMUST00000059349:c.G133A:p.D45N 5qC3.1 NA NA chr5 65318339 GGTxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 395 0 0 235.110258 0.510989 0.02 3.002621 89 93 2435 2455 60 60 0 0 CC 52.333557 174 0 4907 0 KEEP - Tlr1 YES MNNG_4 chr5 65371030 65371030 C T exonic Fam114a1 nonsynonymous SNV NM_026667:c.C76T:p.P26S exonic Fam114a1 nonsynonymous SNV uc012dwm.1:c.C76T:p.P26S exonic ENSMUSG00000029185 nonsynonymous SNV ENSMUST00000031080:c.C76T:p.P26S 5qC3.1 NA NA chr5 65371030 TCCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 107 0 0 45.733473 0.461538 0.02 -0.340971 21 18 550 488 60 60 0 0 CC 16.780545 56 0 1497 0 KEEP + Fam114a1 YES MNNG_4 chr5 6770909 6770909 C T exonic Zfp804b stopgain SNV NM_001163223:c.G2153A:p.W718X exonic Zfp804b stopgain SNV uc012dry.1:c.G2153A:p.W718X exonic ENSMUSG00000092094 stopgain SNV ENSMUST00000164784:c.G2045A:p.W682X 5qA1 NA NA chr5 6770909 CTCxAGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 173 2 0 101.041056 0.477273 0.02 0.826155 46 42 1261 1075 60 60 0 0 CC 20.147762 67 0 1895 0 KEEP - Zfp804b YES MNNG_4 chr5 68042781 68042781 A C intronic Atp8a1 NA NA intronic Atp8a1 NA NA intronic ENSMUSG00000037685 NA NA 5qC3.1 NA NA chr5 68042781 ATGxAAG A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552864 0.552887 0.999957 60 1 0 30.395577 0.5 0.02 -0.219185 12 12 326 319 60 60 0 0 AA 7.793982 26 0 705 0 KEEP - Atp8a1 NO MNNG_4 chr5 68074127 68074127 C T exonic Atp8a1 nonsynonymous SNV NM_009727:c.G2149A:p.D717N exonic Atp8a1 nonsynonymous SNV uc008xqd.1:c.G1636A:p.D546N exonic ENSMUSG00000037685 nonsynonymous SNV ENSMUST00000072971:c.G2149A:p.D717N 5qC3.1 NA NA chr5 68074127 CATxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229172 0.229173 0.999997 51 0 0 24.206207 0.6 0.02 -0.131521 6 9 164 243 60 60 0 0 CC 8.724091 29 0 832 0 KEEP - Atp8a1 YES MNNG_4 chr5 72671248 72671248 C T intronic Atp10d NA NA intronic Atp10d NA NA ncRNA_intronic ENSMUSG00000046808 NA NA 5qC3.2 NA NA chr5 72671248 TTGxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 122 0 0 64.813018 0.541667 0.02 -0.420807 22 26 598 668 60 60 0 0 CC 15.339347 51 0 1405 0 KEEP + Atp10d YES MNNG_4 chr5 73480424 73480424 C T exonic Fryl stopgain SNV NM_028194:c.G3243A:p.W1081X exonic Fryl stopgain SNV uc008xsn.1:c.G3243A:p.W1081X exonic ENSMUSG00000070733 stopgain SNV ENSMUST00000094700:c.G3243A:p.W1081X 5qC3.2 NA NA chr5 73480424 CGCxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 245 2 0 153.343595 0.6 0.02 0.74764 38 57 1024 1539 60 60 0 0 CC 34.263632 114 0 3159 0 KEEP - Fryl YES MNNG_4 chr5 84500279 84500279 G A intronic Epha5 NA NA intronic Epha5 NA NA intronic ENSMUSG00000029245 NA NA 5qE1 NA NA chr5 84500279 AAAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865627 0.865745 0.999863 61 0 0 60.490967 0.605263 0.02 -0.341903 15 23 405 606 60 60 0 0 GG 6.016441 20 0 570 0 KEEP - Epha5 YES MNNG_4 chr5 86506971 86506971 G A intronic Stap1 NA NA intronic Stap1 NA NA intronic ENSMUSG00000029254 NA NA 5qE1 NA NA chr5 86506971 AAGxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 86 0 0 40.861469 0.425 0.02 -0.350689 23 17 626 446 70 60 0 0 GG 11.12903 37 0 1034 0 KEEP + Stap1 YES MNNG_4 chr5 87245772 87245772 G A exonic Ythdc1 synonymous SNV NM_177680:c.G414A:p.R138R exonic Ythdc1 synonymous SNV uc008xxw.1:c.G414A:p.R138R exonic ENSMUSG00000035851 synonymous SNV ENSMUST00000038384:c.G414A:p.R138R 5qE1 NA NA chr5 87245772 AAGxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457737 0.457757 0.999957 58 0 0 22.075899 0.428571 0.02 -0.192551 12 9 306 240 60 60 0 0 GG 7.820912 26 0 731 0 KEEP + Ythdc1 YES MNNG_4 chr5 88931673 88931673 C T exonic Enam nonsynonymous SNV NM_017468:c.C1790T:p.P597L exonic Enam nonsynonymous SNV uc008xzt.2:c.C1790T:p.P597L exonic ENSMUSG00000029286 nonsynonymous SNV ENSMUST00000031222:c.C1790T:p.P597L 5qE1 NA NA chr5 88931673 ACCxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641263 0.641347 0.999869 55 0 0 30.018567 0.428571 0.02 -0.245517 16 12 441 326 60 60 0 0 CC 6.313699 21 0 584 0 KEEP + Enam YES MNNG_4 chr5 90697720 90697720 C T exonic Ankrd17 nonsynonymous SNV NM_198010:c.G2524A:p.E842K exonic Ankrd17 nonsynonymous SNV uc008yav.1:c.G2101A:p.E701K exonic ENSMUSG00000055204 nonsynonymous SNV ENSMUST00000081914:c.G2524A:p.E842K 5qE1 NA NA chr5 90697720 GTTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 163 0 0 64.919459 0.391304 0.02 0.983565 42 27 1163 721 60 60 0 0 CC 19.249254 64 0 1803 0 KEEP - Ankrd17 YES MNNG_4 chr5 90998519 90998519 C T exonic 5830473C10Rik nonsynonymous SNV NM_001252661:c.C532T:p.P178S intergenic "Afm(dist=15949),Rassf6(dist=33583)" NA NA exonic ENSMUSG00000070690 nonsynonymous SNV ENSMUST00000094615:c.C547T:p.P183S 5qE1 NA NA chr5 90998519 GGAxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 90 0 0 43.463703 0.473684 0.02 -0.333138 20 18 541 463 60 60 0 0 CC 11.129044 37 0 1029 0 KEEP + 5830473C10Rik YES MNNG_4 chr5 93377387 93377387 G A intronic Shroom3 NA NA intronic Shroom3 NA NA intronic ENSMUSG00000029381 NA NA 5qE2 NA NA chr5 93377387 CTGxATT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 89 0 0 52.510018 0.466667 0.02 -0.394559 24 21 660 560 60 60 0 0 GG 10.227727 34 0 964 0 KEEP + Shroom3 YES MNNG_4 chr5 97124217 97124217 C T intronic Fras1 NA NA intronic Fras1 NA NA intronic ENSMUSG00000034687 NA NA 5qE3 NA NA chr5 97124217 TGCxTAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 150 0 0 72.937555 0.410959 0.02 0.948854 43 30 1185 801 60 60 0 0 CC 19.237212 64 0 1811 0 KEEP + Fras1 YES MNNG_4 chr5 99376365 99376365 G A intronic Prkg2 NA NA intronic Prkg2 NA NA intronic ENSMUSG00000029334 NA NA 5qE3 NA NA chr5 99376365 CTGxACT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 110 0 0 36.819922 0.441176 0.02 -0.298104 19 15 520 398 60 60 0 0 GG 16.540373 55 0 1534 0 KEEP - Prkg2 YES MNNG_4 chr6 106131827 106131827 A T intronic Cntn4 NA NA intronic Cntn4 NA NA intronic ENSMUSG00000064293 NA NA 6qE1 NA NA chr6 106131827 GGTxGAG A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 123 2 0 62.623525 0.55814 0.02 -0.377009 19 24 513 640 60 60 0 0 AA 17.144923 57 0 1587 0 KEEP + Cntn4 NO MNNG_4 chr6 106629404 106629404 A G exonic Cntn4 nonsynonymous SNV NM_001109749:c.A2671G:p.T891A exonic Cntn4 nonsynonymous SNV uc009dcv.2:c.A2671G:p.T891A exonic ENSMUSG00000064293 nonsynonymous SNV ENSMUST00000089208:c.A2671G:p.T891A 6qE1 NA NA chr6 106629404 GCAxCAG A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 101 2 0 9.40671 0.128205 0.02 -0.350674 34 5 892 135 60 60 0 0 AA 12.331045 41 0 1120 0 KEEP + Cntn4 NO MNNG_4 chr6 108468671 108468671 G A intronic Itpr1 NA NA intronic Itpr1 NA NA intronic ENSMUSG00000030102 NA NA 6qE1 NA NA chr6 108468671 CTTxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.640941 0.641347 0.999366 51 0 0 32.48737 0.481481 0.02 -0.245294 14 13 309 344 60 60 0 0 GG 5.106327 17 0 411 0 KEEP + Itpr1 YES MNNG_4 chr6 115827493 115827493 G A exonic Ift122 synonymous SNV NM_001167763:c.G273A:p.T91T exonic Ift122 synonymous SNV uc009djg.2:c.G273A:p.T91T exonic ENSMUSG00000030323 synonymous SNV ENSMUST00000038234:c.G273A:p.T91T 6qE3 NA NA chr6 115827493 CAGxCAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 262 1 0 142.435311 0.542857 0.02 2.071 48 57 1299 1467 60 60 0 0 GG 31.487577 114 1 3152 26 KEEP + Ift122 YES MNNG_4 chr6 116597637 116597637 G C exonic Rassf4 nonsynonymous SNV NM_178045:c.C229G:p.R77G exonic Rassf4 nonsynonymous SNV uc009dkm.2:c.C229G:p.R77G exonic ENSMUSG00000042129 nonsynonymous SNV ENSMUST00000035842:c.C229G:p.R77G 6qE3 NA NA chr6 116597637 CTCxCTC G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.4869 0.490544 0.99257 39 0 0 42.102522 0.652174 0.02 -0.201627 8 15 199 414 60 60 0 0 GG 2.401713 8 0 182 0 KEEP - Rassf4 NO MNNG_4 chr6 117759190 117759190 G A intergenic "1700030F04Rik(dist=57403),Zfp637(dist=32070)" NA NA intergenic "AK006540(dist=57403),Zfp637(dist=32070)" NA NA ncRNA_exonic ENSMUSG00000071237 NA NA 6qF1 NA NA chr6 117759190 TCTxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 231 2 2 111.119379 0.448598 0.02 1.956732 59 48 1600 1202 60 60 0 0 GG 28.276396 94 0 2669 0 KEEP NA 1700030F04Rik YES MNNG_4 chr6 11941991 11941991 G A exonic Phf14 nonsynonymous SNV NM_001168382:c.G2165A:p.G722E exonic Phf14 nonsynonymous SNV uc009aye.2:c.G2165A:p.G722E exonic ENSMUSG00000029629 nonsynonymous SNV ENSMUST00000090632:c.G2165A:p.G722E 6qA1 NA NA chr6 11941991 GTGxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 111 0 0 60.545233 0.438596 0.02 1.000257 32 25 890 656 60 60 0 0 GG 12.925265 43 0 1201 0 KEEP + Phf14 YES MNNG_4 chr6 11942135 11942135 G A intronic Phf14 NA NA intronic Phf14 NA NA intronic ENSMUSG00000029629 NA NA 6qA1 NA NA chr6 11942135 CAAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999999 72 2 0 31.936169 0.448276 0.02 -0.254266 16 13 438 344 60 60 0 0 GG 10.523542 35 0 993 0 KEEP + Phf14 YES MNNG_4 chr6 120467084 120467084 G A exonic Cecr5 synonymous SNV NM_144815:c.C552T:p.D184D exonic Cecr5 synonymous SNV uc009dnl.1:c.C552T:p.D184D exonic ENSMUSG00000058979 synonymous SNV ENSMUST00000075303:c.C552T:p.D184D 6qF1 NA NA chr6 120467084 GAAxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 65 0 0 21.380033 0.473684 0.02 -0.166553 10 9 271 228 60 60 0 0 GG 9.623493 32 0 879 0 KEEP - Cecr5 YES MNNG_4 chr6 125121583 125121583 G A intronic Ncapd2 NA NA intronic Ncapd2 NA NA intronic ENSMUSG00000038252 NA NA 6qF3 NA NA chr6 125121583 AAAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 85 1 0 30.083273 0.351351 0.02 -0.324432 24 13 674 343 60 60 0 0 GG 11.426857 38 0 1073 0 KEEP - Ncapd2 YES MNNG_4 chr6 128446128 128446128 T C exonic Pzp synonymous SNV NM_007376:c.A2295G:p.E765E exonic Pzp synonymous SNV uc009eef.1:c.A2295G:p.E765E exonic ENSMUSG00000030359 synonymous SNV ENSMUST00000032510:c.A2295G:p.E765E 6qF3 NA NA chr6 128446128 CAAxTCA T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227464 0.229173 0.99254 26 0 0 6.374085 0.2 0.02 -0.13145 12 3 301 82 60 60 0 0 TT 2.706948 9 0 248 0 KEEP - Pzp NO MNNG_4 chr6 135183325 135183325 G A exonic 8430419L09Rik nonsynonymous SNV NM_028982:c.G1700A:p.G567E exonic 8430419L09Rik nonsynonymous SNV uc009eli.2:c.G1700A:p.G567E exonic ENSMUSG00000030207 nonsynonymous SNV ENSMUST00000087740:c.G1700A:p.G567E 6qG1 NA NA chr6 135183325 CAGxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 29 0 0 18.370815 0.538462 0.02 -0.11344 6 7 148 189 60 60 0 0 GG 3.910486 13 0 366 0 KEEP + 8430419L09Rik YES MNNG_4 chr6 138606294 138606294 G T exonic Igbp1b nonsynonymous SNV NM_015777:c.C672A:p.D224E exonic Igbp1b nonsynonymous SNV uc009enq.1:c.C672A:p.D224E exonic ENSMUSG00000046717 nonsynonymous SNV ENSMUST00000054786:c.C672A:p.D224E 6qG1 NA NA chr6 138606294 GGAxTCT G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 114 0 0 69.388779 0.5 0.02 1.097631 28 28 759 729 60 60 0 0 GG 13.234784 44 0 1233 0 KEEP - Igbp1b NO MNNG_4 chr6 141086815 141086815 G A intergenic "Aebp2(dist=460876),Pde3a(dist=110975)" NA NA intergenic "AK081271(dist=94160),Pde3a(dist=110975)" NA NA intergenic "ENSMUSG00000079264(dist=382241),ENSMUSG00000041741(dist=110975)" NA NA 6qG2 NA NA chr6 141086815 TCTxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 493 2 0 206.440739 0.437186 0.02 4.636075 112 87 3091 2242 60 60 0 0 GG 65.271229 217 0 6225 0 KEEP NA Aebp2 YES MNNG_4 chr6 148219998 148219998 G A exonic Tmtc1 synonymous SNV NM_198967:c.C1756T:p.L586L exonic Tmtc1 synonymous SNV uc009eti.2:c.C1642T:p.L548L exonic ENSMUSG00000030306 synonymous SNV ENSMUST00000100772:c.C1642T:p.L548L 6qG3 NA NA chr6 148219998 TCAxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.420782 0.423478 0.993634 34 0 0 21.263185 0.428571 0.02 -0.184094 12 9 314 232 60 60 0 0 GG 3.593399 12 0 308 0 KEEP - Tmtc1 YES MNNG_4 chr6 148557151 148557151 G A ncRNA_exonic Gm6313 NA NA intergenic "Tmtc1(dist=164277),Ipo8(dist=162055)" NA NA ncRNA_exonic ENSMUSG00000070995 NA NA 6qG3 NA NA chr6 148557151 CTGxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999999 89 0 0 51.622605 0.588235 0.02 -0.306821 14 20 389 521 60 60 0 0 GG 10.528495 35 0 991 0 KEEP - Gm6313 YES MNNG_4 chr6 24506274 24506274 G A intronic Asb15 NA NA intronic Asb15 NA NA exonic ENSMUSG00000029685 nonsynonymous SNV ENSMUST00000090534:c.G37A:p.V13I 6qA3.1 NA NA chr6 24506274 CAGxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490538 0.490544 0.999988 60 0 0 26.620593 0.5 0.02 -0.201612 11 11 287 280 60 60 0 0 GG 8.120258 27 0 737 0 KEEP + Asb15 YES MNNG_4 chr6 24690873 24690873 G T intronic Hyal6 NA NA intronic Hyal6 NA NA intronic ENSMUSG00000029679 NA NA 6qA3.1 NA NA chr6 24690873 AGTxATT G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.608972 0.612407 0.994391 44 0 0 19.60837 0.346154 0.02 -0.236722 17 9 471 226 60 60 0 0 GG 3.909646 13 0 366 0 KEEP + Hyal6 NO MNNG_4 chr6 29127437 29127437 G A exonic Prrt4 nonsynonymous SNV NM_001101443:c.C332T:p.P111L exonic Prrt4 nonsynonymous SNV uc009bcz.2:c.C332T:p.P111L exonic ENSMUSG00000079654 nonsynonymous SNV ENSMUST00000159200:c.C332T:p.P111L 6qA3.3 NA NA chr6 29127437 TCTxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.757343 0.760887 0.995343 54 0 0 37.518961 0.5 0.02 -0.289326 15 15 412 394 60 60 0 0 GG 4.210806 14 0 388 0 KEEP - Prrt4 YES MNNG_4 chr6 30507724 30507724 G A exonic Cpa2 nonsynonymous SNV NM_001024698:c.G1034A:p.S345N exonic Cpa2 nonsynonymous SNV uc009bfn.1:c.G1034A:p.S345N exonic ENSMUSG00000071553 nonsynonymous SNV ENSMUST00000096066:c.G1034A:p.S345N 6qA3.3 NA NA chr6 30507724 CCAxTTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 73 0 0 26.517897 0.666667 0.02 -0.131504 5 10 137 259 60 60 0 0 GG 11.429849 38 0 1060 0 KEEP + Cpa2 YES MNNG_4 chr6 30514363 30514363 G A exonic Cpa2 nonsynonymous SNV NM_001024698:c.G1192A:p.A398T exonic Cpa2 nonsynonymous SNV uc009bfn.1:c.G1192A:p.A398T exonic ENSMUSG00000071553 nonsynonymous SNV ENSMUST00000096066:c.G1192A:p.A398T 6qA3.3 NA NA chr6 30514363 ACAxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 54 0 0 34.576143 0.538462 0.02 -0.227931 12 14 333 357 60 60 0 0 GG 6.915195 23 0 626 0 KEEP + Cpa2 YES MNNG_4 chr6 3416166 3416166 G A exonic Hepacam2 synonymous SNV NM_178899:c.C1236T:p.I412I exonic Hepacam2 synonymous SNV uc009auz.1:c.C1236T:p.I412I exonic ENSMUSG00000044156 synonymous SNV ENSMUST00000049985:c.C1236T:p.I412I 6qA1 NA NA chr6 3416166 GTAxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 95 0 0 36.054274 0.518519 0.02 -0.236745 13 14 363 375 60 60 0 0 GG 15.63409 52 0 1481 0 KEEP - Hepacam2 YES MNNG_4 chr6 34885533 34885533 G A intronic Stra8 NA NA intronic Stra8 NA NA intronic ENSMUSG00000029848 NA NA 6qB1 NA NA chr6 34885533 GCAxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865632 0.865745 0.999869 65 0 0 50.698899 0.512821 0.02 -0.341956 19 20 531 529 60 60 0 0 GG 6.316687 21 0 599 0 KEEP + Stra8 YES MNNG_4 chr6 38579921 38579921 G A intronic Klrg2 NA NA intronic Klrg2 NA NA intronic ENSMUSG00000071537 NA NA 6qB1 NA NA chr6 38579921 AGAxACT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 80 1 0 54.416871 0.567568 0.02 -0.324412 16 21 450 554 60 60 0 0 GG 9.325575 31 0 886 0 KEEP - Klrg2 YES MNNG_4 chr6 39526553 39526553 G A intronic Adck2 NA NA intronic Adck2 NA NA intronic ENSMUSG00000046947 NA NA 6qB1 NA NA chr6 39526553 CTTxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582905 0.58293 0.999957 56 0 0 33.474574 0.538462 0.02 -0.227901 12 14 325 346 60 60 0 0 GG 7.820219 26 0 720 0 KEEP + Adck2 YES MNNG_4 chr6 40602767 40602767 G A intronic Mgam NA NA intronic Mgam NA NA intronic ENSMUSG00000068587 NA NA 6qB1 NA NA chr6 40602767 GGAxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 37 0 0 17.72272 0.5 0.02 -0.122753 7 7 193 186 60 60 0 0 GG 5.114152 17 0 489 0 KEEP + Mgam YES MNNG_4 chr6 42317556 42317556 G A intronic Epha1 NA NA exonic Epha1 nonsynonymous SNV uc009brd.1:c.C464T:p.S155F intronic ENSMUSG00000029859 NA NA 6qB2.1 NA NA chr6 42317556 AGAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 101 0 0 29.358549 0.302326 0.02 -0.377046 30 13 836 346 60 60 0 0 GG 12.923983 43 0 1225 0 KEEP - Epha1 YES MNNG_4 chr6 42628458 42628458 G A exonic Fam115a nonsynonymous SNV NM_029930:c.C1582T:p.P528S exonic Fam115a nonsynonymous SNV uc009bro.1:c.C1582T:p.P528S exonic ENSMUSG00000036667 nonsynonymous SNV ENSMUST00000045054:c.C1582T:p.P528S 6qB2.1 NA NA chr6 42628458 TGGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851983 0.851984 0.999999 83 1 0 53.460366 0.552632 0.02 -0.333172 17 21 474 548 60 60 0 0 GG 10.528848 35 0 998 0 KEEP - Fam115a YES MNNG_4 chr6 43117410 43117410 T C exonic Olfr437 nonsynonymous SNV NM_146296:c.T352C:p.S118P exonic Olfr437 nonsynonymous SNV uc009bsh.1:c.T352C:p.S118P exonic ENSMUSG00000071481 nonsynonymous SNV ENSMUST00000060243:c.T352C:p.S118P 6qB2.1 NA NA chr6 43117410 ATGxCCT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999218 0.999218 1 220 0 0 121.152515 0.5625 0.02 0.993854 35 45 893 1235 60 60 0 0 TT 35.149642 117 0 3151 0 KEEP + Olfr437 NO MNNG_4 chr6 4465653 4465653 G A exonic Col1a2 nonsynonymous SNV NM_007743:c.G421A:p.A141T exonic Col1a2 nonsynonymous SNV uc009avm.1:c.G421A:p.A141T exonic ENSMUSG00000029661 nonsynonymous SNV ENSMUST00000169615:c.G118A:p.A40T 6qA1 NA NA chr6 4465653 CCAxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 426 3 0 196.490712 0.47929 0.02 3.301682 88 81 2414 2087 60 60 0 1 GG 52.612845 175 0 4885 0 KEEP + Col1a2 YES MNNG_4 chr6 48420551 48420551 G A exonic Sspo nonsynonymous SNV NM_173428:c.G7084A:p.V2362M exonic Sspo nonsynonymous SNV uc009bul.1:c.G1108A:p.V370M exonic ENSMUSG00000029797 nonsynonymous SNV ENSMUST00000043676:c.G6649A:p.V2217M 6qB2.3 NA NA chr6 48420551 ACGxTGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 62 0 0 55.984295 0.724138 0.02 -0.254214 8 21 216 534 60 60 0 0 GG 8.421094 28 0 765 0 KEEP + Sspo YES MNNG_4 chr6 48440599 48440599 G A intronic Sspo NA NA intronic Sspo NA NA intronic ENSMUSG00000029797 NA NA 6qB2.3 NA NA chr6 48440599 ACAxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 129 0 0 70.892779 0.47541 0.02 1.16041 32 29 884 754 60 60 0 0 GG 15.942846 53 0 1497 0 KEEP + Sspo YES MNNG_4 chr6 48569596 48569596 G A exonic Zfp775 nonsynonymous SNV NM_173429:c.G404A:p.G135D exonic Zfp775 nonsynonymous SNV uc009bvc.1:c.G404A:p.G135D exonic ENSMUSG00000007216 nonsynonymous SNV ENSMUST00000061720:c.G404A:p.G135D 6qB2.3 NA NA chr6 48569596 GTGxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.639957 0.641347 0.997832 47 0 0 31.200294 0.464286 0.02 -0.245447 15 13 401 334 60 60 0 0 GG 4.812007 16 0 441 0 KEEP + Zfp775 YES MNNG_4 chr6 48857730 48857730 G A exonic Aoc1 synonymous SNV NM_001161621:c.G1707A:p.Q569Q exonic Abp1 synonymous SNV uc009bwb.2:c.G1707A:p.Q569Q exonic ENSMUSG00000029811 synonymous SNV ENSMUST00000162948:c.G1707A:p.Q569Q 6qB2.3 NA NA chr6 48857730 CCAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999997 82 0 0 31.475764 0.361111 0.02 -0.315664 23 13 632 355 60 60 0 0 GG 9.625569 32 0 897 0 KEEP + Aoc1 YES MNNG_4 chr6 48925803 48925803 G A exonic Doxl2 nonsynonymous SNV NM_001029987:c.G662A:p.G221D exonic Doxl2 nonsynonymous SNV uc009bwd.1:c.G662A:p.G221D exonic ENSMUSG00000068536 nonsynonymous SNV ENSMUST00000090063:c.G662A:p.G221D 6qB2.3 NA NA chr6 48925803 CAGxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 61 0 0 32.278784 0.52 0.02 -0.219173 12 13 325 336 60 60 0 0 GG 9.307881 31 0 814 0 KEEP + Doxl2 YES MNNG_4 chr6 52112983 52112983 G A exonic Hoxa2 nonsynonymous SNV NM_010451:c.C1021T:p.P341S exonic Hoxa2 nonsynonymous SNV uc009bxz.1:c.C1021T:p.P341S exonic ENSMUSG00000014704 nonsynonymous SNV ENSMUST00000014848:c.C1021T:p.P341S 6qB3 NA NA chr6 52112983 CAGxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 114 2 0 82.492993 0.55 0.02 1.07133 27 33 743 847 60 60 0 0 GG 12.923803 43 0 1169 0 KEEP - Hoxa2 YES MNNG_4 chr6 54171938 54171938 T C intronic Chn2 NA NA intronic Chn2 NA NA UTR3 ENSMUSG00000004633 NA NA 6qB3 NA NA chr6 54171938 CCGxCTG T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162449 0.162467 0.999892 41 0 0 21.554008 0.615385 0.02 -0.113954 5 8 123 215 60 60 0 0 TT 6.91766 23 0 633 0 KEEP + Chn2 NO MNNG_4 chr6 54219375 54219375 G A intronic Chn2 NA NA ncRNA_intronic AK080009 NA NA ncRNA_UTR5 ENSMUSG00000004633 NA NA 6qB3 NA NA chr6 54219375 GAGxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 34 2 0 17.622432 0.5 0.02 -0.122753 7 7 195 185 70 60 0 0 GG 4.502769 15 0 408 0 KEEP + Chn2 YES MNNG_4 chr6 54219414 54219414 G A intronic Chn2 NA NA ncRNA_intronic AK080009 NA NA ncRNA_UTR5 ENSMUSG00000004633 NA NA 6qB3 NA NA chr6 54219414 CCAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 32 2 0 12.345189 0.416667 0.02 -0.10521 7 5 188 135 70 60 0 0 GG 4.512022 15 0 422 0 KEEP + Chn2 YES MNNG_4 chr6 70676429 70676429 G A intergenic "Rprl1(dist=1399261),Rpia(dist=39285)" NA NA ncRNA_exonic "M34473,abParts" NA NA exonic ENSMUSG00000076609 unknown UNKNOWN 6qC1 NA NA chr6 70676429 CAGxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 142 0 0 82.869786 0.492537 0.02 1.009975 34 33 916 873 60 60 0 0 GG 17.078954 57 0 1559 0 KEEP NA Rprl1 YES MNNG_4 chr6 70839574 70839574 G A exonic Eif2ak3 synonymous SNV NM_010121:c.G1857A:p.R619R exonic Eif2ak3 synonymous SNV uc009cgc.1:c.G1185A:p.R395R exonic ENSMUSG00000031668 synonymous SNV ENSMUST00000034093:c.G1857A:p.R619R 6qC1 NA NA chr6 70839574 GAGxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 143 0 0 65.959776 0.52 0.02 -0.438386 24 26 658 686 60 60 0 0 GG 19.036911 66 1 1860 7 KEEP + Eif2ak3 YES MNNG_4 chr6 78416799 78416799 G A exonic Reg3g nonsynonymous SNV NM_011260:c.C419T:p.S140F exonic Reg3g nonsynonymous SNV uc009ckb.1:c.C419T:p.S140F exonic ENSMUSG00000030017 nonsynonymous SNV ENSMUST00000032089:c.C419T:p.S140F 6qC3 NA NA chr6 78416799 GAGxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 85 1 0 46.070478 0.529412 0.02 -0.298117 16 18 447 477 60 60 0 0 GG 12.63386 42 0 1186 0 KEEP - Reg3g YES MNNG_4 chr6 82679560 82679560 T G exonic Hk2 nonsynonymous SNV NM_013820:c.A2354C:p.K785T exonic Hk2 nonsynonymous SNV uc009cll.2:c.A2354C:p.K785T exonic ENSMUSG00000000628 nonsynonymous SNV ENSMUST00000000642:c.A2354C:p.K785T 6qC3 NA NA chr6 82679560 AACxTAG T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 104 0 0 12.738691 0.205882 0.02 -0.306808 27 7 727 169 60 60 0 0 TT 16.534144 55 0 1509 0 KEEP - Hk2 NO MNNG_4 chr6 83391803 83391803 G A ncRNA_exonic B230319C09Rik NA NA ncRNA_exonic B230319C09Rik NA NA ncRNA_exonic ENSMUSG00000051844 NA NA 6qC3 NA NA chr6 83391803 CCGxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552864 0.552887 0.999957 61 0 0 33.30698 0.541667 0.02 -0.210417 11 13 305 343 60 60 0 0 GG 7.808443 26 0 708 0 KEEP + B230319C09Rik YES MNNG_4 chr6 86920959 86920959 G A intronic Aak1 NA NA intronic Aak1 NA NA intronic ENSMUSG00000057230 NA NA 6qD1 NA NA chr6 86920959 CCTxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 197 0 0 99.823779 0.532468 0.02 0.81622 36 41 1010 1034 60 60 0 0 GG 27.977289 93 0 2676 0 KEEP + Aak1 YES MNNG_4 chr6 92151618 92151618 T G exonic Zfyve20 nonsynonymous SNV NM_030081:c.A443C:p.K148T exonic Zfyve20 nonsynonymous SNV uc009cyv.1:c.A443C:p.K148T exonic ENSMUSG00000014550 nonsynonymous SNV ENSMUST00000014694:c.A443C:p.K148T 6qD1 NA NA chr6 92151618 GACxTTT T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 96 0 0 7.446037 0.1 0.02 -0.438353 45 5 1216 121 60 60 0 0 TT 12.297125 41 0 1121 0 KEEP - Zfyve20 NO MNNG_4 chr6 92326127 92326127 T C exonic Prickle2 nonsynonymous SNV NM_001134459:c.A2351G:p.E784G exonic Prickle2 nonsynonymous SNV uc009cyx.2:c.A2351G:p.E784G exonic ENSMUSG00000030020 nonsynonymous SNV ENSMUST00000113445:c.A2351G:p.E784G 6qD1 NA NA chr6 92326127 GACxCAG T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 120 0 0 18.121624 0.15873 0.02 1.134203 53 10 1429 253 60 60 0 0 TT 14.110058 47 0 1286 0 KEEP - Prickle2 NO MNNG_4 chr6 93765825 93765825 G A intronic Magi1 NA NA intronic Magi1 NA NA intronic ENSMUSG00000045095 NA NA 6qD1 NA NA chr6 93765825 GCAxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999999 71 0 0 34.470463 0.65 0.02 -0.175346 7 13 194 339 60 60 0 0 GG 10.828521 36 0 1008 0 KEEP - Magi1 YES MNNG_4 chr6 97279547 97279547 G A exonic Frmd4b nonsynonymous SNV NM_145148:c.C431T:p.A144V exonic Frmd4b nonsynonymous SNV uc009dau.1:c.C431T:p.A144V exonic ENSMUSG00000030064 nonsynonymous SNV ENSMUST00000032146:c.C593T:p.A198V 6qD3 NA NA chr6 97279547 CTGxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 90 0 0 49.176749 0.446809 0.02 -0.4208 26 21 704 532 60 60 0 0 GG 11.42866 38 0 1036 0 KEEP - Frmd4b YES MNNG_4 chr7 105310612 105310612 G A UTR5 Capn5 NA NA UTR5 Capn5 NA NA exonic ENSMUSG00000035547 synonymous SNV ENSMUST00000155056:c.C18T:p.P6P 7qE2 NA NA chr7 105310612 AAGxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 30 0 0 22.196159 0.666667 0.02 -0.10522 4 8 110 217 60 60 0 0 GG 4.5026 15 0 406 0 KEEP - Capn5 YES MNNG_4 chr7 106730701 106730701 G A intronic Arrb1 NA NA intronic Arrb1 NA NA intronic ENSMUSG00000018909 NA NA 7qE2 NA NA chr7 106730701 TAGxGCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 143 0 0 84.402741 0.592593 0.02 1.115145 22 32 600 850 60 60 0 0 GG 23.727993 79 0 2189 0 KEEP + Arrb1 YES MNNG_4 chr7 107232382 107232382 G A intronic Pold3 NA NA intronic Pold3 NA NA intronic ENSMUSG00000030726 NA NA 7qE2 NA NA chr7 107232382 AAGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457707 0.457757 0.999892 52 0 0 37.207869 0.636364 0.02 -0.192887 8 14 225 368 60 60 0 0 GG 6.90949 23 0 639 0 KEEP - Pold3 YES MNNG_4 chr7 107441204 107441204 C T exonic P4ha3 synonymous SNV NM_177161:c.C313T:p.L105L exonic P4ha3 synonymous SNV uc009ims.1:c.C313T:p.L105L exonic ENSMUSG00000051048 synonymous SNV ENSMUST00000057023:c.C313T:p.L105L 7qE3 NA NA chr7 107441204 AGTxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 69 0 0 20.59332 0.310345 0.02 -0.254291 20 9 558 241 60 60 0 0 CC 9.626331 32 0 914 0 KEEP + P4ha3 YES MNNG_4 chr7 109231434 109231434 G A intronic Trpc2 NA NA UTR5;UTR3 Trpc2;Trpc2 NA NA UTR3 ENSMUSG00000070425 NA NA 7qE3 NA NA chr7 109231434 GCTxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 91 0 0 80.139856 0.769231 0.02 -0.341816 9 30 238 750 60 60 0 0 GG 11.726495 39 0 1103 0 KEEP + Trpc2 YES MNNG_4 chr7 109247946 109247946 A G splicing Art5(NM_007491:exon3:c.60+2T>C) NA NA splicing "Art5(uc009iqp.2:exon2:c.60+2T>C,uc009iqq.2:exon2:c.60+2T>C,uc012fqt.1:exon3:c.60+2T>C,uc012fqv.1:exon3:c.60+2T>C)" NA NA splicing "ENSMUSG00000070424(ENSMUST00000094128:exon4:c.60+2T>C,ENSMUST00000106940:exon3:c.60+2T>C,ENSMUST00000106937:exon3:c.60+2T>C,ENSMUST00000084835:exon3:c.60+2T>C,ENSMUST00000106934:exon3:c.60+2T>C,ENSMUST00000106935:exon2:c.60+2T>C)" NA NA 7qE3 NA NA chr7 109247946 GTTxCCT A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 118 0 0 44.611431 0.352941 0.02 1.248154 33 18 825 504 60 60 0 0 AA 15.308143 51 0 1333 0 KEEP - Art5 NO MNNG_4 chr7 109615508 109615508 G A exonic Rrm1 synonymous SNV NM_009103:c.G2118A:p.Q706Q exonic Rrm1 synonymous SNV uc009irp.2:c.G2118A:p.Q706Q exonic ENSMUSG00000030978 synonymous SNV ENSMUST00000033283:c.G2118A:p.Q706Q 7qE3 NA NA chr7 109615508 CCAxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 131 2 0 90.044516 0.62963 0.02 1.123916 20 34 544 893 60 60 0 0 GG 17.747289 59 0 1660 0 KEEP + Rrm1 YES MNNG_4 chr7 109709082 109709082 C T intronic Trim21 NA NA intronic Trim21 NA NA intronic ENSMUSG00000030966 NA NA 7qE3 NA NA chr7 109709082 ACAxATG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.99986 40 0 0 22.302482 0.6 0.02 -0.131483 6 9 163 224 60 60 0 0 CC 5.7145 19 0 521 0 KEEP - Trim21 YES MNNG_4 chr7 109846845 109846845 G A exonic Olfr557 nonsynonymous SNV NM_146361:c.G92A:p.G31E exonic Olfr557 nonsynonymous SNV uc009ish.2:c.G92A:p.G31E exonic ENSMUSG00000073967 nonsynonymous SNV ENSMUST00000098218:c.G92A:p.G31E 7qE3 NA NA chr7 109846845 TAGxATC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 195 0 0 108.707378 0.655738 0.02 1.062507 21 40 581 1067 60 60 0 0 GG 35.494214 118 0 3344 0 KEEP + Olfr557 YES MNNG_4 chr7 110234763 110234763 G A exonic Olfr584 nonsynonymous SNV NM_147054:c.G730A:p.A244T exonic Olfr584 nonsynonymous SNV uc009itc.1:c.G730A:p.A244T exonic ENSMUSG00000073959 nonsynonymous SNV ENSMUST00000098210:c.G730A:p.A244T 7qE3 NA NA chr7 110234763 AAGxCTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 155 0 0 115.81346 0.633803 0.02 0.878046 26 45 685 1146 60 60 0 0 GG 20.152132 67 0 1855 0 KEEP + Olfr584 YES MNNG_4 chr7 110975234 110975234 G A exonic "Hbb-b1,Hbb-bs" nonsynonymous SNV NM_001201391:c.C389T:p.A130V exonic Beta-s nonsynonymous SNV uc009iuq.2:c.C389T:p.A130V exonic ENSMUSG00000052305 nonsynonymous SNV ENSMUST00000023934:c.C389T:p.A130V 7qE3 "Score=0.989037;Name=No.101567,chr7:110961169" NA chr7 110975234 AAGxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138793 0.139832 0.99257 24 0 1 20.89559 0.666667 0.02 -0.105178 4 8 100 204 60 60 0 0 GG 2.67993 9 0 223 0 KEEP NA Hbb-b1 YES MNNG_4 chr7 112714555 112714555 C T intronic Apbb1 NA NA intronic Apbb1 NA NA intronic ENSMUSG00000037032 NA NA 7qE3 NA NA chr7 112714555 CTCxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 244 0 0 46.820527 0.261905 0.02 0.861116 62 22 1714 573 60 60 0 0 CC 33.078595 110 0 3042 0 KEEP - Apbb1 YES MNNG_4 chr7 112761108 112761108 G A intronic Trim3 NA NA intronic Trim3 NA NA intronic ENSMUSG00000036989 NA NA 7qE3 NA NA chr7 112761108 GGGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387356 0.387407 0.999869 51 0 0 40.131911 0.75 0.02 -0.175097 5 15 136 379 60 60 0 0 GG 6.315719 21 0 578 0 KEEP - Trim3 YES MNNG_4 chr7 112785400 112785400 G A exonic Arfip2 synonymous SNV NM_029802:c.C795T:p.F265F exonic Arfip2 synonymous SNV uc009iyq.2:c.C144T:p.F48F exonic ENSMUSG00000030881 synonymous SNV ENSMUST00000084782:c.C795T:p.F265F 7qE3 NA NA chr7 112785400 CTGxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 71 0 0 48.776538 0.542857 0.02 -0.30687 16 19 438 502 60 60 0 0 GG 8.723509 29 0 820 0 KEEP - Arfip2 YES MNNG_4 chr7 114325746 114325746 C T exonic Nlrp14 nonsynonymous SNV NM_001002894:c.C635T:p.S212F exonic Nlrp14 nonsynonymous SNV uc009jax.2:c.C635T:p.S212F exonic ENSMUSG00000016626 nonsynonymous SNV ENSMUST00000084763:c.C635T:p.S212F 7qE3 NA NA chr7 114325746 GATxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 114 0 0 45.142421 0.38 0.02 -0.438388 31 19 848 505 60 60 0 0 CC 15.040962 50 0 1426 0 KEEP + Nlrp14 YES MNNG_4 chr7 115237064 115237064 C T intergenic "Olfr481(dist=11816),Olfr482(dist=1047)" NA NA intergenic "Olfr481(dist=11816),Olfr482(dist=1047)" NA NA intergenic "ENSMUSG00000054236(dist=11816),ENSMUSG00000059031(dist=1047)" NA NA 7qE3 "Score=0.988619;Name=No.101486,chr7:88912411" NA chr7 115237064 CCAxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 258 3 4 26.787838 0.164835 0.02 0.640902 76 15 2014 373 60 60 0 0 CC 39.371779 131 0 3549 0 KEEP NA Olfr481 YES MNNG_4 chr7 118178896 118178896 G A intronic Ctr9 NA NA intronic Ctr9 NA NA intronic ENSMUSG00000005609 NA NA 7qF1 NA NA chr7 118178896 TAGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162446 0.162467 0.999869 35 0 0 17.940244 0.538462 0.02 -0.113977 6 7 163 185 60 60 0 0 GG 6.316403 21 0 588 0 KEEP + Ctr9 YES MNNG_4 chr7 118219822 118219822 G A exonic Eif4g2 nonsynonymous SNV NM_013507:c.C1382T:p.S461F exonic Eif4g2 nonsynonymous SNV uc009jfy.1:c.C1382T:p.S461F exonic ENSMUSG00000005610 nonsynonymous SNV ENSMUST00000162415:c.C1382T:p.S461F 7qF1 NA NA chr7 118219822 TTAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 103 2 0 56.521994 0.740741 0.02 -0.23673 7 20 192 537 60 60 0 0 GG 18.341976 61 0 1747 0 KEEP - Eif4g2 YES MNNG_4 chr7 120446936 120446936 G A exonic Arntl nonsynonymous SNV NM_001243048:c.G1217A:p.R406Q exonic Arntl nonsynonymous SNV uc009jhi.1:c.G1253A:p.R418Q exonic ENSMUSG00000055116 nonsynonymous SNV ENSMUST00000106637:c.G1217A:p.R406Q 7qF1 NA NA chr7 120446936 GTCxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 69 0 0 60.167572 0.6875 0.02 -0.280425 10 22 236 583 60 60 0 0 GG 9.014368 30 0 762 0 KEEP + Arntl YES MNNG_4 chr7 120682850 120682850 G A exonic Far1 nonsynonymous SNV NM_026143:c.G59A:p.G20D exonic Far1 nonsynonymous SNV uc009jhn.1:c.G59A:p.G20D exonic ENSMUSG00000030759 nonsynonymous SNV ENSMUST00000033018:c.G59A:p.G20D 7qF1 NA NA chr7 120682850 CTGxTTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.422559 0.423478 0.997832 39 0 0 21.562793 0.428571 0.02 -0.184122 12 9 330 235 60 60 0 0 GG 4.812269 16 0 441 0 KEEP + Far1 YES MNNG_4 chr7 127367156 127367156 G A splicing Abca14(NM_026458:exon7:c.975+1G>A) NA NA splicing "Abca14(uc012fsy.1:exon8:c.1083+1G>A,uc009jmn.1:exon7:c.975+1G>A)" NA NA splicing ENSMUSG00000062017(ENSMUST00000084640:exon7:c.975+1G>A) NA NA 7qF2 NA NA chr7 127367156 AAGxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 39 0 0 30.88652 0.631579 0.02 -0.16656 7 12 188 306 60 60 0 0 GG 5.414007 18 0 498 0 KEEP + Abca14 YES MNNG_4 chr7 127741574 127741574 G A ncRNA_exonic E130201H02Rik NA NA exonic E130201H02Rik synonymous SNV uc012fta.1:c.G189A:p.R63R ncRNA_exonic ENSMUSG00000044141 NA NA 7qF2 NA NA chr7 127741574 AAGxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 112 0 0 92.995515 0.767442 0.02 -0.377007 10 33 278 874 60 60 0 0 GG 16.845291 56 0 1583 0 KEEP + E130201H02Rik YES MNNG_4 chr7 128644028 128644028 G A exonic Hs3st2 nonsynonymous SNV NM_001081327:c.G582A:p.M194I exonic Hs3st2 nonsynonymous SNV uc009jnr.1:c.G582A:p.M194I exonic ENSMUSG00000046321 nonsynonymous SNV ENSMUST00000084628:c.G582A:p.M194I 7qF2 NA NA chr7 128644028 CATxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 108 0 0 60.093825 0.71875 0.02 -0.280502 9 23 253 574 60 60 0 0 GG 18.622025 62 0 1696 0 KEEP + Hs3st2 YES MNNG_4 chr7 129271721 129271721 G A exonic Palb2 nonsynonymous SNV NM_001081238:c.C439T:p.P147S exonic Palb2 nonsynonymous SNV uc009joj.1:c.C439T:p.P147S exonic ENSMUSG00000044702 nonsynonymous SNV ENSMUST00000098068:c.C439T:p.P147S 7qF3 NA NA chr7 129271721 ACGxCGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 106 0 0 70.108641 0.608696 0.02 -0.402702 18 28 496 702 60 60 0 0 GG 14.436213 48 0 1320 0 KEEP - Palb2 YES MNNG_4 chr7 132611853 132611853 G A exonic Nsmce1 stopgain SNV NM_026330:c.C703T:p.Q235X exonic Nsmce1 stopgain SNV uc009jqa.2:c.C703T:p.Q235X exonic ENSMUSG00000030750 stopgain SNV ENSMUST00000033006:c.C703T:p.Q235X 7qF3 NA NA chr7 132611853 ACTxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 83 0 0 77.555062 0.777778 0.02 -0.315599 8 28 222 725 60 60 0 0 GG 12.333297 41 0 1163 0 KEEP - Nsmce1 YES MNNG_4 chr7 133539490 133539490 G A exonic Nfatc2ip synonymous SNV NM_010900:c.C399T:p.S133S exonic Nfatc2ip synonymous SNV uc009jra.1:c.C399T:p.S133S exonic ENSMUSG00000030722 synonymous SNV ENSMUST00000075671:c.C399T:p.S133S 7qF3 NA NA chr7 133539490 GAGxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120435 0.120436 0.999988 51 0 0 12.79299 0.454545 0.02 -0.096452 6 5 164 137 60 60 0 0 GG 8.120442 27 0 751 0 KEEP - Nfatc2ip YES MNNG_4 chr7 133974318 133974318 G A intronic 4930451I11Rik NA NA intronic 4930451I11Rik NA NA intronic ENSMUSG00000045989 NA NA 7qF3 NA NA chr7 133974318 CCAxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 122 1 0 74.273163 0.608696 0.02 -0.403327 18 28 502 743 60 60 0 0 GG 17.447951 58 0 1663 0 KEEP - 4930451I11Rik YES MNNG_4 chr7 134007067 134007067 G A exonic Hirip3 nonsynonymous SNV NM_172746:c.G680A:p.C227Y exonic Hirip3 nonsynonymous SNV uc012ftw.1:c.G680A:p.C227Y exonic ENSMUSG00000042606 nonsynonymous SNV ENSMUST00000037248:c.G680A:p.C227Y 7qF3 NA NA chr7 134007067 ACTxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16126 0.162467 0.99257 24 0 0 23.100052 0.692308 0.02 -0.113952 4 9 112 223 60 60 0 0 GG 2.40628 8 0 223 0 KEEP + Hirip3 YES MNNG_4 chr7 134013905 134013905 G A exonic Taok2 synonymous SNV NM_001163775:c.C3264T:p.I1088I exonic Taok2 synonymous SNV uc009jth.2:c.C3264T:p.I1088I exonic ENSMUSG00000059981 synonymous SNV ENSMUST00000117394:c.C3264T:p.I1088I 7qF3 NA NA chr7 134013905 AGAxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 127 0 0 96.882814 0.616667 0.02 1.062563 23 37 636 966 60 60 0 0 GG 15.642698 52 0 1485 0 KEEP - Taok2 YES MNNG_4 chr7 134141804 134141804 G A exonic Mvp synonymous SNV NM_080638:c.C540T:p.N180N exonic Mvp synonymous SNV uc009jtw.2:c.C540T:p.N180N exonic ENSMUSG00000030681 synonymous SNV ENSMUST00000032919:c.C513T:p.N171N 7qF3 NA NA chr7 134141804 TTGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 70 0 0 60.502834 0.621622 0.02 -0.324385 14 23 382 602 60 60 0 0 GG 8.410233 28 0 767 0 KEEP - Mvp YES MNNG_4 chr7 134361284 134361284 G A intronic Sept1 NA NA intronic Sept1 NA NA intronic ENSMUSG00000000486 NA NA 7qF3 NA NA chr7 134361284 GTAxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 184 3 0 138.188436 0.704225 0.02 0.966182 21 50 582 1331 60 60 0 0 GG 27.066757 90 0 2490 0 KEEP - Sept1 YES MNNG_4 chr7 134619005 134619005 G A exonic Prr14 synonymous SNV NM_145589:c.G1194A:p.R398R exonic Prr14 synonymous SNV uc009jvq.1:c.G267A:p.R89R exonic ENSMUSG00000030822 synonymous SNV ENSMUST00000033095:c.G1194A:p.R398R 7qF3 NA NA chr7 134619005 CCGxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 90 0 0 69.504956 0.702703 0.02 -0.341877 11 26 298 669 60 60 0 0 GG 13.535902 45 0 1262 0 KEEP + Prr14 YES MNNG_4 chr7 134619975 134619975 G A exonic Prr14 nonsynonymous SNV NM_145589:c.G1640A:p.R547K exonic Prr14 nonsynonymous SNV uc009jvq.1:c.G653A:p.R218K exonic ENSMUSG00000030822 nonsynonymous SNV ENSMUST00000033095:c.G1640A:p.R547K 7qF3 NA NA chr7 134619975 GAAxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.99911 0.99911 1 205 0 0 126.19183 0.607595 0.02 1.002633 31 48 855 1263 60 60 0 0 GG 30.957034 103 0 2878 0 KEEP + Prr14 YES MNNG_4 chr7 134928991 134928991 G A exonic Setd1a nonsynonymous SNV NM_178029:c.G1499A:p.S500N exonic Setd1a nonsynonymous SNV uc009jwt.1:c.G1499A:p.S500N exonic ENSMUSG00000042308 nonsynonymous SNV ENSMUST00000047075:c.G1499A:p.S500N 7qF3 NA NA chr7 134928991 GCAxTTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 127 1 0 78.559108 0.659091 0.02 -0.385781 15 29 416 770 60 60 0 0 GG 18.349038 61 0 1729 0 KEEP + Setd1a YES MNNG_4 chr7 134942937 134942937 G A exonic Setd1a nonsynonymous SNV NM_178029:c.G5095A:p.D1699N exonic Setd1a nonsynonymous SNV uc009jwt.1:c.G5095A:p.D1699N exonic ENSMUSG00000042308 nonsynonymous SNV ENSMUST00000047075:c.G5095A:p.D1699N 7qF3 NA NA chr7 134942937 GAAxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 108 0 0 56.064058 0.52381 0.02 -0.368258 20 22 558 582 60 60 0 0 GG 14.139478 47 0 1357 0 KEEP + Setd1a YES MNNG_4 chr7 135383925 135383925 C T exonic Armc5 synonymous SNV NM_146205:c.C900T:p.I300I exonic Armc5 synonymous SNV uc009jyk.1:c.C900T:p.I300I exonic ENSMUSG00000042178 synonymous SNV ENSMUST00000044660:c.C900T:p.I300I 7qF3 NA NA chr7 135383925 GATxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 109 0 0 31.105663 0.28 0.02 -0.438412 36 14 992 373 60 60 0 0 CC 15.340157 51 0 1431 0 KEEP + Armc5 YES MNNG_4 chr7 135415431 135415431 G A UTR3 BC017158 NA NA UTR3 BC017158 NA NA UTR3 ENSMUSG00000030780 NA NA 7qF3 NA NA chr7 135415431 CTGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 216 2 0 139.983339 0.623529 0.02 0.852378 32 53 865 1392 60 60 0 0 GG 31.217333 104 0 2861 0 KEEP - BC017158 YES MNNG_4 chr7 135419936 135419936 G A intronic BC017158 NA NA intronic BC017158 NA NA intronic ENSMUSG00000030780 NA NA 7qF3 NA NA chr7 135419936 CCAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 67 1 0 52.200153 0.666667 0.02 -0.271473 10 20 278 510 60 60 0 0 GG 8.418786 28 0 789 0 KEEP - BC017158 YES MNNG_4 chr7 13592497 13592497 G A exonic Zbtb45 synonymous SNV NM_001024699:c.C1182T:p.I394I exonic Zbtb45 synonymous SNV uc009fez.1:c.C1182T:p.I394I exonic ENSMUSG00000049600 synonymous SNV ENSMUST00000051390:c.C1182T:p.I394I 7qA1 NA NA chr7 13592497 AGAxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229028 0.229173 0.999366 34 0 0 20.612639 0.533333 0.02 -0.13152 7 8 193 213 60 60 0 0 GG 5.113622 17 0 478 0 KEEP - Zbtb45 YES MNNG_4 chr7 13629109 13629109 G A exonic Mzf1 synonymous SNV NM_145819:c.C1716T:p.C572C exonic Mzf1 synonymous SNV uc009ffe.2:c.C1953T:p.C651C exonic ENSMUSG00000030380 synonymous SNV ENSMUST00000005709:c.C1137T:p.C379C 7qA1 NA NA chr7 13629109 GGCxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 41 0 0 16.132346 0.388889 0.02 -0.157212 11 7 262 180 60 60 0 0 GG 5.409919 18 0 461 0 KEEP - Mzf1 YES MNNG_4 chr7 139507644 139507644 C T ncRNA_exonic Gm10584 NA NA exonic Gm10584 nonsynonymous SNV uc012fvc.1:c.C283T:p.P95S intronic "ENSMUSG00000030849,ENSMUSG00000030930" NA NA 7qF3 NA NA chr7 139507644 CCAxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 90 0 0 41.229786 0.4 0.02 -0.39449 27 18 720 458 60 60 0 0 CC 9.888184 33 0 840 0 KEEP + Gm10584 YES MNNG_4 chr7 142350164 142350164 G A exonic Dock1 synonymous SNV NM_001033420:c.G4872A:p.R1624R exonic Dock1 synonymous SNV uc009kdx.1:c.G2529A:p.R843R exonic ENSMUSG00000058325 synonymous SNV ENSMUST00000084488:c.G4872A:p.R1624R 7qF3 NA NA chr7 142350164 CAGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 218 0 0 103.526648 0.555556 0.02 0.96681 32 40 860 1059 60 60 0 0 GG 34.592524 115 0 3251 0 KEEP + Dock1 YES MNNG_4 chr7 147414729 147414729 G A intronic Cd163l1 NA NA intronic Cd163l1 NA NA intronic ENSMUSG00000025461 NA NA 7qF4 NA NA chr7 147414729 GCGxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 102 0 0 50.875587 0.583333 0.02 -0.333022 15 21 407 515 60 60 0 0 GG 15.919148 53 0 1427 0 KEEP + Cd163l1 YES MNNG_4 chr7 147416199 147416199 G A exonic Cd163l1 nonsynonymous SNV NM_172909:c.G2804A:p.G935D exonic Cd163l1 nonsynonymous SNV uc009khj.2:c.G2810A:p.G937D exonic ENSMUSG00000025461 nonsynonymous SNV ENSMUST00000026531:c.G2810A:p.G937D 7qF4 NA NA chr7 147416199 CAGxTGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457737 0.457757 0.999957 54 0 0 48.910683 0.818182 0.02 -0.192608 4 18 109 449 60 60 0 0 GG 7.820306 26 0 727 0 KEEP + Cd163l1 YES MNNG_4 chr7 147724484 147724484 C T intergenic "Olfr536(dist=31267),Olfr538(dist=35570)" NA NA intergenic "Olfr536(dist=31267),Olfr538(dist=35570)" NA NA intergenic "ENSMUSG00000052508(dist=31267),ENSMUSG00000066125(dist=35546)" NA NA 7qF4 "Score=0.950637;Name=No.101644,chr7:147759519" NA chr7 147724484 AGTxTAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 182 0 0 49.129012 0.328125 0.02 1.036154 43 21 1199 567 60 60 0 0 CC 26.171744 87 0 2485 0 KEEP NA Olfr536 YES MNNG_4 chr7 147997790 147997790 G A exonic Zfp941 synonymous SNV NM_001001180:c.C1554T:p.H518H exonic Zfp941 synonymous SNV uc009kie.1:c.C1554T:p.H518H exonic ENSMUSG00000060314 synonymous SNV ENSMUST00000080651:c.C1554T:p.H518H 7qF5 NA NA chr7 147997790 TTGxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.99986 36 0 0 26.918226 0.666667 0.02 -0.131512 5 10 139 263 60 60 0 0 GG 5.713329 19 0 518 0 KEEP - Zfp941 YES MNNG_4 chr7 148023678 148023678 G A ncRNA_UTR3 Urah NA NA UTR3 1190003J15Rik NA NA UTR3 ENSMUSG00000025481 NA NA 7qF5 NA NA chr7 148023678 AGTxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 75 0 0 65.536939 0.793103 0.02 -0.254261 6 23 170 610 60 60 0 0 GG 11.731311 39 0 1108 0 KEEP + Urah YES MNNG_4 chr7 148824923 148824923 G A exonic Muc6 unknown UNKNOWN exonic Muc6 nonsynonymous SNV uc009klu.2:c.C5144T:p.T1715I exonic ENSMUSG00000048191 nonsynonymous SNV ENSMUST00000062451:c.C5525T:p.T1842I 7qF5 NA NA chr7 148824923 GAGxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 690 0 0 79.477592 0.146179 0.02 6.361573 257 44 6832 1128 60 60 0 0 GG 99.185907 330 0 9061 0 KEEP - Muc6 YES MNNG_4 chr7 148997004 148997004 G A exonic Muc5ac nonsynonymous SNV NM_010844:c.G5809A:p.D1937N exonic Muc5ac nonsynonymous SNV uc009kmb.1:c.G5806A:p.D1936N exonic ENSMUSG00000037974 nonsynonymous SNV ENSMUST00000166516:c.G235A:p.D79N 7qF5 NA NA chr7 148997004 CAGxATT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 102 0 0 78.636102 0.674419 0.02 -0.377001 14 29 383 766 60 60 0 0 GG 14.135191 47 0 1328 0 KEEP + Muc5ac YES MNNG_4 chr7 149628310 149628310 G A upstream Tnni2 NA NA upstream Tnni2 NA NA UTR5 ENSMUSG00000031097 NA NA 7qF5 NA NA chr7 149628310 AAGxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 37 0 0 29.649196 0.647059 0.02 -0.149051 6 11 164 292 60 60 0 0 GG 5.108759 17 0 459 0 KEEP + Tnni2 YES MNNG_4 chr7 151688808 151688808 G A intronic Ppfia1 NA NA intronic Ppfia1 NA NA intronic ENSMUSG00000037519 NA NA 7qF5 NA NA chr7 151688808 ACAxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.454585 0.457757 0.993072 35 0 0 26.61547 0.5 0.02 -0.192845 11 11 309 280 60 60 0 0 GG 3.309229 11 0 317 0 KEEP - Ppfia1 YES MNNG_4 chr7 16574653 16574653 G A exonic Gltscr1 nonsynonymous SNV NM_001081418:c.C287T:p.A96V exonic Gltscr1 nonsynonymous SNV uc009fgu.1:c.C287T:p.A96V exonic ENSMUSG00000070808 nonsynonymous SNV ENSMUST00000094821:c.C287T:p.A96V 7qA2 NA NA chr7 16574653 GGGxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 147 0 0 33.147325 0.301887 0.02 1.019061 37 16 961 396 60 60 0 0 GG 16.45098 62 1 1663 19 KEEP - Gltscr1 YES MNNG_4 chr7 19063578 19063578 C T intronic Psg26 NA NA intronic Psg26 NA NA intronic ENSMUSG00000070799 NA NA 7qA2 "Score=0.942623;Name=No.98799,chr7:19008176" NA chr7 19063578 CGAxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 285 10 15 33.236162 0.301887 0.02 0.948668 37 16 981 397 60 60 0 0 CC 47.228065 167 1 4554 28 KEEP - Psg26 YES MNNG_4 chr7 19781719 19781719 G A intronic Eml2 NA NA intronic Eml2 NA NA intronic ENSMUSG00000040811 NA NA 7qA3 NA NA chr7 19781719 GTGxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036492 0.036766 0.99257 15 0 0 10.546339 0.666667 0.02 -0.052598 2 4 56 103 60 60 0 0 GG 2.360574 8 0 202 0 KEEP + Eml2 YES MNNG_4 chr7 19850108 19850108 G A exonic Vasp synonymous SNV NM_001282021:c.C72T:p.L24L exonic Vasp synonymous SNV uc009fle.2:c.C72T:p.L24L exonic ENSMUSG00000030403 synonymous SNV ENSMUST00000032561:c.C72T:p.L24L 7qA3 NA NA chr7 19850108 AGGxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 105 0 0 40.914082 0.435897 0.02 -0.350455 22 17 573 444 60 60 0 0 GG 15.340372 51 0 1436 0 KEEP - Vasp YES MNNG_4 chr7 19972324 19972324 G A exonic Ercc2 synonymous SNV NM_007949:c.G762A:p.R254R exonic Ercc2 synonymous SNV uc012fbc.1:c.G6A:p.K2K exonic ENSMUSG00000030400 synonymous SNV ENSMUST00000108461:c.G6A:p.K2K 7qA3 NA NA chr7 19972324 CAGxACT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 79 0 0 37.225724 0.483871 0.02 -0.271793 16 15 437 394 60 60 0 0 GG 11.125344 37 0 1021 0 KEEP + Ercc2 YES MNNG_4 chr7 25409670 25409670 C T exonic Phldb3 synonymous SNV NM_001102613:c.C1449T:p.S483S exonic Phldb3 synonymous SNV uc009fqd.1:c.C636T:p.S212S exonic ENSMUSG00000074277 synonymous SNV ENSMUST00000073325:c.C1449T:p.S483S 7qA3 NA NA chr7 25409670 AAGxCGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 92 0 0 24.589782 0.354839 0.02 -0.271788 20 11 545 281 60 60 0 0 CC 12.630601 42 0 1148 0 KEEP + Phldb3 YES MNNG_4 chr7 25772555 25772555 C T exonic Atp1a3 nonsynonymous SNV NM_144921:c.G2162A:p.G721E exonic Atp1a3 nonsynonymous SNV uc009fre.1:c.G2162A:p.G721E exonic ENSMUSG00000040907 nonsynonymous SNV ENSMUST00000080882:c.G2162A:p.G721E 7qA3 NA NA chr7 25772555 ACCxCGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076843 0.077336 0.993634 25 0 0 10.122548 0.444444 0.02 -0.078915 5 4 137 109 60 60 0 0 CC 3.609384 12 0 333 0 KEEP - Atp1a3 YES MNNG_4 chr7 27094111 27094111 A C intronic Cyp2a4 NA NA intronic Cyp2a4 NA NA intronic ENSMUSG00000074254 NA NA 7qA3 "Score=0.974651;Name=No.100280,chr7:27603852" NA chr7 27094111 GTAxTCT A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 244 0 4 10.229684 0.069767 0.02 0.932858 80 6 2004 168 60 60 0 0 AA 39.390658 131 0 3510 0 KEEP + Cyp2a4 NO MNNG_4 chr7 27959480 27959480 C T exonic Rab4b nonsynonymous SNV NM_029391:c.G391A:p.V131I exonic Rab4b nonsynonymous SNV uc009fvd.1:c.G355A:p.V119I exonic ENSMUSG00000053291 nonsynonymous SNV ENSMUST00000093040:c.G391A:p.V131I 7qA3 NA NA chr7 27959480 TGAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 204 0 0 42.469931 0.277778 0.02 0.868756 52 20 1407 514 60 60 0 0 CC 30.976394 103 0 2829 0 KEEP - Rab4b YES MNNG_4 chr7 27963723 27963723 C T intronic Rab4b NA NA intronic Rab4b NA NA intronic "ENSMUSG00000053291,ENSMUSG00000089661" NA NA 7qA3 NA NA chr7 27963723 CCCxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 0.999997 45 0 0 11.81994 0.8 0.02 -0.043844 1 4 28 110 60 60 0 0 CC 8.711716 29 0 809 0 KEEP - Rab4b YES MNNG_4 chr7 28593277 28593277 C T intergenic "Gm10046(dist=37286),Zfp59(dist=30326)" NA NA exonic 4933426I21Rik synonymous SNV uc009fxd.1:c.C91T:p.L31L exonic ENSMUSG00000030604 synonymous SNV ENSMUST00000069967:c.C91T:p.L31L 7qA3 "Score=0.952253;Name=No.100310,chr7:28792091" NA chr7 28593277 TTCxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 171 1 0 46.790802 0.404255 0.02 -0.412083 28 19 765 515 57 60 0 0 CC 29.179321 97 0 2758 0 KEEP NA Gm10046 YES MNNG_4 chr7 29532837 29532837 C T intronic Sars2 NA NA intronic Sars2 NA NA intronic ENSMUSG00000070699 NA NA 7qA3 NA NA chr7 29532837 TGCxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 97 0 0 15.24234 0.21875 0.02 -0.280578 25 7 679 192 60 60 0 0 CC 16.242457 54 0 1509 0 KEEP + Sars2 YES MNNG_4 chr7 29930880 29930880 C T exonic Rasgrp4 synonymous SNV NM_001174155:c.C1008T:p.Y336Y exonic Rasgrp4 synonymous SNV uc009gat.1:c.C534T:p.Y178Y exonic ENSMUSG00000030589 synonymous SNV ENSMUST00000032811:c.C1008T:p.Y336Y 7qB1 NA NA chr7 29930880 CTAxCGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 121 0 0 21.563528 0.23913 0.02 -0.403261 35 11 950 273 60 60 0 0 CC 16.228031 54 0 1465 0 KEEP + Rasgrp4 YES MNNG_4 chr7 31366211 31366211 A C intronic Kmt2b NA NA intronic "Gapdhs,Wbp7" NA NA intronic ENSMUSG00000006307 NA NA 7qB1 NA NA chr7 31366211 CTGxCCG A C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162447 0.162467 0.999879 43 0 0 8.723728 0.307692 0.02 -0.113936 9 4 229 103 60 60 0 0 AA 6.615839 22 0 591 0 KEEP - Kmt2b NO MNNG_4 chr7 31366878 31366878 C T exonic Kmt2b synonymous SNV NM_029274:c.G3786A:p.G1262G exonic Wbp7 synonymous SNV uc009gff.1:c.G3225A:p.G1075G exonic ENSMUSG00000006307 synonymous SNV ENSMUST00000006470:c.G3786A:p.G1262G 7qB1 NA NA chr7 31366878 GCGxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 159 0 0 58.442538 0.396825 0.02 0.947651 38 25 1042 649 60 60 0 0 CC 23.157211 77 0 2103 0 KEEP - Kmt2b YES MNNG_4 chr7 31372274 31372274 C T exonic Kmt2b nonsynonymous SNV NM_029274:c.G436A:p.G146S exonic Wbp7 nonsynonymous SNV uc009gfg.1:c.G436A:p.G146S exonic ENSMUSG00000006307 nonsynonymous SNV ENSMUST00000006470:c.G436A:p.G146S 7qB1 NA NA chr7 31372274 CACxTCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.386047 0.387407 0.99649 41 2 0 13.457193 0.3 0.02 -0.175358 14 6 381 159 60 60 0 0 CC 4.511942 15 0 420 0 KEEP - Kmt2b YES MNNG_4 chr7 31388819 31388819 C T exonic Upk1a stopgain SNV NM_026815:c.G701A:p.W234X exonic Upk1a stopgain SNV uc009gfj.1:c.G701A:p.W234X exonic ENSMUSG00000006313 stopgain SNV ENSMUST00000006476:c.G701A:p.W234X 7qB1 NA NA chr7 31388819 AACxACG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 87 0 0 28.94501 0.382353 0.02 -0.297558 21 13 575 326 60 60 0 0 CC 11.730677 39 0 1097 0 KEEP - Upk1a YES MNNG_4 chr7 3164156 3164156 G A exonic AU018091 synonymous SNV NM_001004153:c.C258T:p.D86D exonic AU018091 synonymous SNV uc009euk.1:c.C258T:p.D86D exonic ENSMUSG00000054753 synonymous SNV ENSMUST00000163910:c.C111T:p.D37D 7qA1 NA NA chr7 3164156 CAGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 51 0 0 22.940071 0.37037 0.02 -0.236716 17 10 461 259 60 60 0 0 GG 5.714396 19 0 522 0 KEEP - AU018091 YES MNNG_4 chr7 31747834 31747834 C A exonic Lsr nonsynonymous SNV NM_017405:c.G612T:p.L204F exonic Lsr nonsynonymous SNV uc009ghj.2:c.G612T:p.L204F exonic ENSMUSG00000001247 nonsynonymous SNV ENSMUST00000001279:c.G612T:p.L204F 7qB1 NA NA chr7 31747834 TTCxAAG C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 82 0 0 30.636431 0.545455 0.02 -0.219192 10 12 276 315 60 60 0 0 CC 11.72202 39 0 1089 0 KEEP - Lsr NO MNNG_4 chr7 3365494 3365494 G A intronic Cacng7 NA NA intronic Cacng7 NA NA intronic ENSMUSG00000069806 NA NA 7qA1 NA NA chr7 3365494 CGGxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 98 0 0 63.531974 0.45614 0.02 1.00025 31 26 853 682 60 60 0 0 GG 8.422257 28 0 788 0 KEEP + Cacng7 YES MNNG_4 chr7 36180363 36180363 C T exonic C230052I12Rik nonsynonymous SNV NM_178643:c.G139A:p.A47T exonic C230052I12Rik nonsynonymous SNV uc009gjt.1:c.G139A:p.A47T exonic ENSMUSG00000030493 nonsynonymous SNV ENSMUST00000032704:c.G139A:p.A47T 7qB2 NA NA chr7 36180363 ATGxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353909 0.353947 0.999892 49 0 0 8.263768 0.210526 0.02 -0.1666 15 4 414 106 60 60 0 0 CC 6.918596 23 0 649 0 KEEP - C230052I12Rik YES MNNG_4 chr7 3796246 3796246 A T intronic "Pira1,Pira11,Pira2,Pira4,Pira7" NA NA ncRNA_intronic Pirb NA NA intronic "ENSMUSG00000074417,ENSMUSG00000089942" NA NA 7qA1 "Score=0.991842;Name=No.96070,chr7:3667619" NA chr7 3796246 GACxCAG A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 91 0 4 6.352508 1 0.02 -0.052605 0 2 0 54 0 29 0 0 AA 20.451414 68 0 1855 0 KEEP NA Pira1 NO MNNG_4 chr7 39232612 39232612 C T intergenic "Pop4(dist=176245),Gm5591(dist=70546)" NA NA intergenic "AK005849(dist=4378),Gm5591(dist=70546)" NA NA intergenic "ENSMUSG00000070238(dist=67138),ENSMUSG00000060565(dist=70546)" NA NA 7qB2 "Score=0.968532;Name=No.101102,chr7:46605908" NA chr7 39232612 GGGxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 557 11 100 16.722158 0.076389 0.02 3.345875 133 11 3640 283 60 36 0 0 CC 94.341316 316 1 8731 5 KEEP NA Pop4 YES MNNG_4 chr7 46567075 46567075 T G intergenic "Gm21276(dist=47171),Gm5114(dist=95589)" NA NA intergenic "Gm16387(dist=47171),Gm5114(dist=95589)" NA NA intergenic "ENSMUSG00000070060(dist=27572),ENSMUSG00000053742(dist=95589)" NA NA 7qB3 "Score=0.96737;Name=No.101082,chr7:39161441" NA chr7 46567075 CTGxTAC T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 389 3 7 11.376211 0.058333 0.02 2.14302 113 7 2930 196 60 29 0 0 TT 64.058398 213 0 5822 0 KEEP NA Gm21276 NO MNNG_4 chr7 46664565 46664565 T C exonic Gm5114 synonymous SNV NM_177890:c.A999G:p.K333K exonic Gm5114 synonymous SNV uc009gkz.1:c.A999G:p.K333K exonic ENSMUSG00000053742 synonymous SNV ENSMUST00000031488:c.A999G:p.K333K 7qB3 "Score=0.96265;Name=No.101122,chr7:39348778" NA chr7 46664565 CTCxTTT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 201 2 10 9.891515 0.138889 0.02 -0.324388 31 5 824 138 60 54 0 0 TT 41.506898 138 0 3830 0 KEEP - Gm5114 NO MNNG_4 chr7 48541458 48541458 T C exonic Gm5592 nonsynonymous SNV NM_001033782:c.T13C:p.S5P exonic Gm5592 nonsynonymous SNV uc009glk.1:c.T13C:p.S5P exonic ENSMUSG00000072259 nonsynonymous SNV ENSMUST00000097044:c.T13C:p.S5P 7qB3 "Score=0.960073;Name=No.101182,chr7:48330835" NA chr7 48541458 AATxCCC T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 141 4 3 9.428084 0.113636 0.02 -0.403251 39 5 1022 138 60 39 0 0 TT 19.321728 74 1 2011 27 KEEP + Gm5592 NO MNNG_4 chr7 51087056 51087056 C A UTR3 Klk6 NA NA UTR3 Klk6 NA NA UTR3 ENSMUSG00000050063 NA NA 7qB4 NA NA chr7 51087056 ACCxTCG C A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 109 0 0 75.332727 0.84375 0.02 -0.280505 5 27 140 685 60 60 0 0 CC 18.047703 60 0 1702 0 KEEP + Klk6 NO MNNG_4 chr7 51651066 51651066 C T exonic Syt3 nonsynonymous SNV NM_001114116:c.C1451T:p.T484I exonic Syt3 nonsynonymous SNV uc009gph.2:c.C1451T:p.T484I exonic ENSMUSG00000030731 nonsynonymous SNV ENSMUST00000120262:c.C1451T:p.T484I 7qB4 NA NA chr7 51651066 AGAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934491 0.934492 0.999999 89 0 0 35.624067 0.347826 0.02 -0.403276 30 16 807 409 60 60 0 0 CC 10.824933 36 0 967 0 KEEP + Syt3 YES MNNG_4 chr7 51807324 51807324 C G splicing Nr1h2(NM_009473:exon6:c.445+1G>C) NA NA splicing "Nr1h2(uc012fjr.1:exon3:c.232+1G>C,uc009gpz.1:exon6:c.445+1G>C,uc009gqa.1:exon6:c.445+1G>C,uc009gqb.1:exon6:c.436+1G>C,uc009gqc.1:exon6:c.436+1G>C,uc009gqd.1:exon6:c.436+1G>C)" NA NA splicing "ENSMUSG00000060601(ENSMUST00000107912:exon5:c.445+1G>C,ENSMUST00000073488:exon6:c.445+1G>C,ENSMUST00000107911:exon6:c.436+1G>C,ENSMUST00000107910:exon6:c.436+1G>C,ENSMUST00000167197:exon6:c.445+1G>C)" NA NA 7qB4 NA NA chr7 51807324 TTAxACT C G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.99986 40 0 0 25.031854 0.5625 0.02 -0.140278 7 9 182 255 60 60 0 0 CC 5.713457 19 0 515 0 KEEP - Nr1h2 NO MNNG_4 chr7 52465870 52465870 C T intronic Dkkl1 NA NA intronic Dkkl1 NA NA intronic ENSMUSG00000030792 NA NA 7qB4 NA NA chr7 52465870 ACAxCCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 100 0 0 44.251219 0.422222 0.02 -0.394368 26 19 692 485 60 60 0 0 CC 12.634108 42 0 1192 0 KEEP - Dkkl1 YES MNNG_4 chr7 52703269 52703269 G T exonic Gys1 nonsynonymous SNV NM_030678:c.G1310T:p.R437L exonic Gys1 nonsynonymous SNV uc009gve.1:c.G1310T:p.R437L exonic ENSMUSG00000003865 nonsynonymous SNV ENSMUST00000107766:c.G1118T:p.R373L 7qB4 NA NA chr7 52703269 AGCxGCA G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 342 5 0 145.443574 0.522936 0.02 2.231262 52 57 1176 1510 60 60 1 0 GG 51.325382 171 0 4253 0 KEEP + Gys1 NO MNNG_4 chr7 52779294 52779294 C T exonic Ppp1r15a nonsynonymous SNV NM_008654:c.G1459A:p.G487R exonic Ppp1r15a nonsynonymous SNV uc009gvt.2:c.G1459A:p.G487R exonic ENSMUSG00000040435 nonsynonymous SNV ENSMUST00000167273:c.G1459A:p.G487R 7qB4 NA NA chr7 52779294 CTCxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 116 0 0 42.686963 0.327273 0.02 1.11509 37 18 1012 492 60 60 0 0 CC 15.642556 52 0 1479 0 KEEP - Ppp1r15a YES MNNG_4 chr7 52885742 52885742 G C exonic Rasip1 synonymous SNV NM_028544:c.G1038C:p.G346G exonic Rasip1 synonymous SNV uc009gwi.1:c.G1038C:p.G346G exonic ENSMUSG00000044562 synonymous SNV ENSMUST00000057927:c.G1038C:p.G346G 7qB4 NA NA chr7 52885742 AGGxGCA G C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 133 0 0 35.650081 0.305085 0.02 1.08155 41 18 1103 428 60 60 0 0 GG 18.649323 62 0 1733 0 KEEP + Rasip1 NO MNNG_4 chr7 52905699 52905699 C T exonic Fut2 nonsynonymous SNV NM_018876:c.G1018A:p.D340N exonic Fut2 nonsynonymous SNV uc009gwn.1:c.G1018A:p.D340N exonic ENSMUSG00000055978 nonsynonymous SNV ENSMUST00000069800:c.G1018A:p.D340N 7qB4 NA NA chr7 52905699 GGTxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043633 0.043787 0.99649 26 0 0 7.354401 0.428571 0.02 -0.061379 4 3 112 80 60 60 0 0 CC 4.512524 15 0 431 0 KEEP - Fut2 YES MNNG_4 chr7 53046644 53046644 C T intronic Lmtk3 NA NA intronic "Lmtk3,aatyk3" NA NA intronic ENSMUSG00000062044 NA NA 7qB4 NA NA chr7 53046644 GAAxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 173 0 0 52.555535 0.380952 0.02 0.948091 39 24 1034 593 60 60 0 0 CC 25.860723 86 0 2316 0 KEEP + Lmtk3 YES MNNG_4 chr7 53905386 53905386 C T exonic Tph1 nonsynonymous SNV NM_001136084:c.G1100A:p.C367Y exonic Tph1 nonsynonymous SNV uc009gyq.2:c.G1100A:p.C367Y exonic ENSMUSG00000040046 nonsynonymous SNV ENSMUST00000049298:c.G1100A:p.C367Y 7qB4 NA NA chr7 53905386 AGAxATT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 57 0 0 10.130912 0.263158 0.02 -0.166575 14 5 381 125 60 60 0 0 CC 9.023505 30 0 834 0 KEEP - Tph1 YES MNNG_4 chr7 55702470 55702470 C T UTR3 Mrgprb1 NA NA UTR3 Mrgprb1 NA NA UTR3 ENSMUSG00000070547 NA NA 7qB4 NA NA chr7 55702470 GTTxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 137 0 0 30.307221 0.25 0.02 1.00899 42 14 1155 373 60 60 0 0 CC 20.454028 68 0 1928 0 KEEP - Mrgprb1 YES MNNG_4 chr7 56073994 56073994 C T intronic Zdhhc13 NA NA intronic Zdhhc13 NA NA intronic ENSMUSG00000030471 NA NA 7qB4 NA NA chr7 56073994 TTTxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 109 0 0 43.771926 0.439024 0.02 -0.359488 23 18 641 474 60 60 0 0 CC 18.049525 60 0 1716 0 KEEP + Zdhhc13 YES MNNG_4 chr7 57170126 57170126 C T exonic Slc6a5 synonymous SNV NM_148931:c.C567T:p.S189S exonic Slc6a5 synonymous SNV uc009hbv.2:c.C591T:p.S197S exonic ENSMUSG00000039728 synonymous SNV ENSMUST00000107605:c.C567T:p.S189S 7qB5 NA NA chr7 57170126 GTCxAGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 60 0 0 29.700937 0.5 0.02 -0.210296 12 12 315 312 60 60 0 0 CC 8.422711 28 0 793 0 KEEP + Slc6a5 YES MNNG_4 chr7 57704196 57704196 C T intronic Nell1 NA NA intronic Nell1 NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57704196 TTTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 64 0 0 13.26509 0.272727 0.02 -0.192908 16 6 444 160 60 60 0 0 CC 9.927437 33 0 946 0 KEEP + Nell1 YES MNNG_4 chr7 63152092 63152092 C T exonic Cyfip1 synonymous SNV NM_001164662:c.C1581T:p.P527P exonic Cyfip1 synonymous SNV uc009hdk.2:c.C1581T:p.P527P exonic ENSMUSG00000030447 synonymous SNV ENSMUST00000032629:c.C1581T:p.P527P 7qB5 NA NA chr7 63152092 GCCxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 96 0 0 20.742921 0.3 0.02 -0.271466 21 9 560 244 60 60 0 0 CC 15.028835 50 0 1406 0 KEEP + Cyfip1 YES MNNG_4 chr7 64763405 64763405 G A exonic Gabra5 synonymous SNV NM_176942:c.C30T:p.I10I exonic Gabra5 synonymous SNV uc009heb.1:c.C30T:p.I10I exonic ENSMUSG00000055078 synonymous SNV ENSMUST00000068456:c.C30T:p.I10I 7qC NA NA chr7 64763405 CATxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 83 0 0 31.899249 0.464286 0.02 -0.245506 15 13 421 341 60 60 0 0 GG 11.218435 40 1 1145 7 KEEP - Gabra5 YES MNNG_4 chr7 7134005 7134005 G A exonic Zfp418 synonymous SNV NM_146179:c.G255A:p.K85K exonic Zfp418 synonymous SNV uc009fck.1:c.G255A:p.K85K exonic ENSMUSG00000034538 synonymous SNV ENSMUST00000051435:c.G255A:p.K85K 7qA1 NA NA chr7 7134005 AAAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 65 0 0 30.028208 0.461538 0.02 -0.227975 14 12 389 321 60 60 0 0 GG 9.625768 32 0 903 0 KEEP + Zfp418 YES MNNG_4 chr7 71529241 71529241 C T exonic Mphosph10 nonsynonymous SNV NM_026483:c.G1258A:p.E420K exonic Mphosph10 nonsynonymous SNV uc009hgg.1:c.G1258A:p.E420K exonic ENSMUSG00000030521 nonsynonymous SNV ENSMUST00000098394:c.G151A:p.E51K 7qC NA NA chr7 71529241 CCTxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 81 2 0 23.657041 0.344828 0.02 -0.254295 19 10 533 270 60 60 0 0 CC 11.732745 39 0 1126 0 KEEP - Mphosph10 YES MNNG_4 chr7 72459659 72459659 C T exonic Tjp1 synonymous SNV NM_001163574:c.G2649A:p.E883E exonic Tjp1 synonymous SNV uc009hgo.2:c.G2649A:p.E883E exonic ENSMUSG00000030516 synonymous SNV ENSMUST00000032729:c.G2649A:p.E883E 7qC NA NA chr7 72459659 ATCxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 96 0 0 36.26964 0.384615 0.02 -0.341957 24 15 657 404 60 60 0 0 CC 12.032228 40 0 1128 0 KEEP - Tjp1 YES MNNG_4 chr7 80608655 80608655 C T exonic Chd2 synonymous SNV NM_001081345:c.G3462A:p.E1154E exonic Chd2 synonymous SNV uc009hrd.2:c.G3462A:p.E1154E exonic ENSMUSG00000078671 synonymous SNV ENSMUST00000169922:c.G3462A:p.E1154E 7qD1 NA NA chr7 80608655 GCAxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.835486 0.835716 0.999725 80 0 0 41.318371 0.459459 0.02 -0.324353 20 17 536 443 60 60 0 0 CC 9.925966 33 0 921 0 KEEP - Chd2 YES MNNG_4 chr7 81111814 81111814 C T exonic St8sia2 nonsynonymous SNV NM_009181:c.G361A:p.D121N exonic St8sia2 nonsynonymous SNV uc009hwe.2:c.G361A:p.D121N exonic ENSMUSG00000025789 nonsynonymous SNV ENSMUST00000026896:c.G361A:p.D121N 7qD2 NA NA chr7 81111814 TGTxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 74 0 0 28.351475 0.4 0.02 -0.26301 18 12 499 314 60 60 0 0 CC 12.032502 40 0 1141 0 KEEP - St8sia2 YES MNNG_4 chr7 88471106 88471106 A G intronic Pde8a NA NA intronic Pde8a NA NA intronic ENSMUSG00000025584 NA NA 7qD3 NA NA chr7 88471106 AGTxACC A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.999859 34 0 0 6.933497 0.272727 0.02 -0.09641 8 3 199 83 60 60 0 0 AA 3.753063 17 1 445 12 KEEP + Pde8a NO MNNG_4 chr7 93561282 93561282 T C exonic Olfr301 nonsynonymous SNV NM_212436:c.T409C:p.W137R exonic Olfr301 nonsynonymous SNV uc009iez.1:c.T409C:p.W137R exonic ENSMUSG00000061549 nonsynonymous SNV ENSMUST00000073222:c.T412C:p.W138R 7qD3 NA NA chr7 93561282 CACxGGT T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 372 4 0 11.217799 0.8 0.02 -0.043825 1 4 27 104 60 23 0 0 TT 88.128756 293 0 8132 0 KEEP + Olfr301 NO MNNG_4 chr7 93561283 93561283 G A exonic Olfr301 stopgain SNV NM_212436:c.G410A:p.W137X exonic Olfr301 stopgain SNV uc009iez.1:c.G410A:p.W137X exonic ENSMUSG00000061549 stopgain SNV ENSMUST00000073222:c.G413A:p.W138X 7qD3 NA NA chr7 93561283 ACTxGTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 369 4 0 11.31881 0.8 0.02 -0.043832 1 4 27 105 60 23 0 0 GG 87.230065 290 0 8243 0 KEEP + Olfr301 YES MNNG_4 chr7 93675335 93675335 G A exonic Olfr297 nonsynonymous SNV NM_146618:c.G67A:p.V23I exonic Olfr297 nonsynonymous SNV uc009ifc.1:c.G67A:p.V23I exonic ENSMUSG00000057067 nonsynonymous SNV ENSMUST00000071112:c.G67A:p.V23I 7qD3 NA NA chr7 93675335 AGGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 187 5 2 12.010666 0.111111 0.02 0.938891 56 7 1513 182 60 37 0 0 GG 30.379907 101 0 2820 0 KEEP + Olfr297 YES MNNG_4 chr7 93734423 93734423 G T exonic Olfr295 nonsynonymous SNV NM_146851:c.G637T:p.A213S exonic Olfr295 nonsynonymous SNV uc009ifd.1:c.G637T:p.A213S exonic ENSMUSG00000059319 nonsynonymous SNV ENSMUST00000078447:c.G637T:p.A213S 7qD3 "Score=0.916591;Name=No.101516,chr7:93700865" NA chr7 93734423 ATTxCCA G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 248 2 0 7.372425 0.056818 0.02 0.728407 83 5 2261 133 60 46 0 0 GG 41.192778 137 0 3770 0 KEEP + Olfr295 NO MNNG_4 chr7 97592317 97592317 C T exonic Crebzf stopgain SNV NM_145151:c.C793T:p.Q265X exonic Crebzf stopgain SNV uc009ihl.1:c.C793T:p.Q265X exonic ENSMUSG00000051451 stopgain SNV ENSMUST00000061767:c.C538T:p.Q180X 7qE1 NA NA chr7 97592317 CTGxAGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423472 0.423478 0.999988 61 0 0 43.012771 0.761905 0.02 -0.184086 5 16 141 404 60 60 0 0 CC 8.121761 27 0 766 0 KEEP + Crebzf YES MNNG_4 chr7 9765404 9765404 C T intergenic "Vmn2r44(dist=5546),Vmn2r43(dist=101323)" NA NA intergenic "Vmn2r44(dist=5546),Vmn2r43(dist=101323)" NA NA intergenic "ENSMUSG00000091178(dist=5546),ENSMUSG00000092447(dist=4009)" NA NA 7qA1 "Score=0.971577;Name=No.96654,chr7:7479578" NA chr7 9765404 TGGxTTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 732 10 240 21.464919 0.104839 0.02 1.798909 111 13 3018 333 36 23 0 0 CC 140.76424 468 0 12998 0 KEEP NA Vmn2r44 YES MNNG_4 chr7 99566595 99566595 C T intronic Dlg2 NA NA intronic Dlg2 NA NA intronic ENSMUSG00000052572 NA NA 7qE1 NA NA chr7 99566595 ATGxAGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 279 0 0 57.988041 0.333333 0.02 0.693301 54 27 1482 675 60 60 0 0 CC 40.907721 136 0 3832 0 KEEP + Dlg2 YES MNNG_4 chr8 101671145 101671145 G A intronic Cdh8 NA NA ncRNA_exonic AK139634 NA NA ncRNA_exonic ENSMUSG00000086842 NA NA 8qD1 NA NA chr8 101671145 GTGxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909068 0.909069 0.999999 86 0 0 49.836881 0.465116 0.02 -0.377023 23 20 635 532 60 60 0 0 GG 10.528314 35 0 990 0 KEEP - Cdh8 YES MNNG_4 chr8 103161732 103161732 G A intergenic "Cdh8(dist=1221375),Cdh11(dist=1995163)" NA NA intergenic "AK042807(dist=904394),AK038730(dist=1632677)" NA NA intergenic "ENSMUSG00000090316(dist=17337),ENSMUSG00000091838(dist=572703)" NA NA 8qD1 "Score=0.928615;Name=No.91918,chr5:43351884" NA chr8 103161732 GTGxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 276 0 0 138.615296 0.593407 0.02 0.739564 37 54 1004 1397 60 60 0 0 GG 41.791682 139 0 3868 0 KEEP NA Cdh8 YES MNNG_4 chr8 107146238 107146238 G A intronic Cdh16 NA NA intronic Cdh16 NA NA intronic ENSMUSG00000031881 NA NA 8qD3 NA NA chr8 107146238 GGAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800211 0.800245 0.999957 65 0 0 42.47501 0.485714 0.02 -0.306867 18 17 492 449 60 60 0 0 GG 7.820699 26 0 735 0 KEEP - Cdh16 YES MNNG_4 chr8 107164447 107164447 G A exonic Fam96b nonsynonymous SNV NM_026753:c.C367T:p.P123S exonic Fam96b nonsynonymous SNV uc009nba.1:c.C367T:p.P123S exonic ENSMUSG00000031879 nonsynonymous SNV ENSMUST00000093234:c.C362T:p.T121I 8qD3 NA NA chr8 107164447 CGGxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 146 4 0 49.026276 0.4375 0.02 -0.429511 27 21 711 533 60 60 0 0 GG 20.440938 68 0 1828 0 KEEP - Fam96b YES MNNG_4 chr8 107200623 107200623 G A intergenic "Fam96b(dist=34995),Ces2a(dist=57280)" NA NA intergenic "AK006980(dist=18276),Ces2a(dist=57280)" NA NA intergenic "ENSMUSG00000023737(dist=18136),ENSMUSG00000055730(dist=57280)" NA NA 8qD3 "Score=0.895228;Name=No.104258,chr8:107257549" NA chr8 107200623 GAAxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 94 1 14 26.872712 0.333333 0.02 -0.315626 24 12 652 311 60 60 0 0 GG 10.824421 36 0 978 0 KEEP NA Fam96b YES MNNG_4 chr8 107798955 107798955 G A exonic Hsf4 nonsynonymous SNV NM_001256044:c.G1087A:p.A363T exonic Hsf4 nonsynonymous SNV uc009ncc.1:c.G1087A:p.A363T exonic ENSMUSG00000033249 nonsynonymous SNV ENSMUST00000163734:c.G1087A:p.A363T 8qD3 NA NA chr8 107798955 TTGxCAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 151 2 0 75.711108 0.508197 0.02 0.965263 30 31 817 793 60 60 0 0 GG 20.438718 68 0 1856 0 KEEP + Hsf4 YES MNNG_4 chr8 107847271 107847271 G A intronic Lrrc29 NA NA intronic Lrrc29 NA NA intronic ENSMUSG00000041679 NA NA 8qD3 NA NA chr8 107847271 TGAxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 50 0 0 16.715811 0.35 0.02 -0.175367 13 7 356 190 60 60 0 0 GG 7.219192 24 0 675 0 KEEP - Lrrc29 YES MNNG_4 chr8 108140865 108140865 G A exonic Fam65a nonsynonymous SNV NM_001081241:c.G889A:p.V297I exonic Fam65a nonsynonymous SNV uc009ndj.1:c.G889A:p.V297I exonic ENSMUSG00000038604 nonsynonymous SNV ENSMUST00000043531:c.G889A:p.V297I 8qD3 NA NA chr8 108140865 CAGxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 146 0 0 92.574648 0.560606 0.02 1.018773 29 37 772 946 60 60 0 0 GG 19.848465 66 0 1792 0 KEEP + Fam65a YES MNNG_4 chr8 108219509 108219509 G A intronic Rltpr NA NA intronic Rltpr NA NA intronic ENSMUSG00000050357 NA NA 8qD3 NA NA chr8 108219509 AGAxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.939968 0.954491 0.984784 81 0 0 52.228539 0.44898 0.02 -0.42939 27 22 756 564 60 60 0 0 GG 6.317091 21 0 597 0 KEEP + Rltpr YES MNNG_4 chr8 108370950 108370950 G A exonic Cenpt nonsynonymous SNV NM_177150:c.C847T:p.P283S exonic Cenpt nonsynonymous SNV uc009neg.1:c.C94T:p.P32S exonic ENSMUSG00000036672 nonsynonymous SNV ENSMUST00000040776:c.C847T:p.P283S 8qD3 NA NA chr8 108370950 CAGxGCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 258 0 0 97.202893 0.438202 0.02 0.816984 50 39 1370 1051 60 60 0 0 GG 38.141399 127 0 3468 0 KEEP - Cenpt YES MNNG_4 chr8 108939609 108939609 G A UTR5 Zfp90 NA NA UTR5 Zfp90 NA NA ncRNA_UTR5 ENSMUSG00000031907 NA NA 8qD3 NA NA chr8 108939609 CTGxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 26 1 0 9.376473 0.363636 0.02 -0.096449 7 4 193 106 60 60 0 0 GG 3.594429 12 0 298 0 KEEP + Zfp90 YES MNNG_4 chr8 109028418 109028418 G A intergenic "Zfp90(dist=78629),Cdh3(dist=6334)" NA NA intergenic "Zfp90(dist=78623),Cdh3(dist=6373)" NA NA exonic ENSMUSG00000054069 nonsynonymous SNV ENSMUST00000066875:c.G335A:p.G112E 8qD3 NA NA chr8 109028418 GCGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 86 2 0 47.937086 0.527778 0.02 -0.315539 17 19 458 497 60 60 0 0 GG 10.528761 35 0 997 0 KEEP NA Zfp90 YES MNNG_4 chr8 109220499 109220499 G A intronic Tango6 NA NA intronic Tmco7 NA NA intronic ENSMUSG00000041949 NA NA 8qD3 NA NA chr8 109220499 TGTxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 81 0 0 54.427488 0.594595 0.02 -0.324341 15 22 421 548 60 60 0 0 GG 10.528973 35 0 1003 0 KEEP + Tango6 YES MNNG_4 chr8 109409360 109409360 G A UTR3 Chtf8 NA NA exonic Chtf8 synonymous SNV uc009ngq.1:c.C846T:p.I282I exonic ENSMUSG00000046691 synonymous SNV ENSMUST00000169312:c.C846T:p.I282I 8qD3 "Score=0.964245;Name=No.60447,chr15:5901442" NA chr8 109409360 CAGxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 125 0 0 63.347448 0.472727 0.02 1.018085 29 26 800 675 60 60 0 0 GG 17.144776 57 0 1610 0 KEEP - Chtf8 YES MNNG_4 chr8 111471663 111471663 A T exonic Zfhx3 nonsynonymous SNV NM_007496:c.A5444T:p.N1815I exonic Zfhx3 nonsynonymous SNV uc009nid.1:c.A5444T:p.N1815I exonic ENSMUSG00000038872 nonsynonymous SNV ENSMUST00000043896:c.A5444T:p.N1815I 8qD3 NA NA chr8 111471663 TCAxCCC A T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 229 0 0 23.322532 0.138298 0.02 0.66775 81 13 2008 335 60 60 0 0 AA 32.736442 109 0 2828 0 KEEP + Zfhx3 NO MNNG_4 chr8 113098780 113098780 G A exonic Hydin nonsynonymous SNV NM_172916:c.G11242A:p.V3748M exonic Hydin nonsynonymous SNV uc009nks.1:c.G11242A:p.V3748M exonic ENSMUSG00000059854 nonsynonymous SNV ENSMUST00000043141:c.G11242A:p.V3748M 8qE1 NA NA chr8 113098780 GTGxTGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.99986 42 0 0 36.763482 0.666667 0.02 -0.184089 7 14 190 359 60 60 0 0 GG 5.712901 19 0 520 0 KEEP + Hydin YES MNNG_4 chr8 113273340 113273340 G A exonic Il34 synonymous SNV NM_001135100:c.C147T:p.N49N exonic Il34 synonymous SNV uc012gko.1:c.C147T:p.N49N exonic ENSMUSG00000031750 synonymous SNV ENSMUST00000076846:c.C147T:p.N49N 8qE1 NA NA chr8 113273340 CCGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 63 0 0 51.148152 0.703704 0.02 -0.236511 8 19 203 492 60 60 0 0 GG 7.469165 29 1 793 11 KEEP - Il34 YES MNNG_4 chr8 113502650 113502650 G A intronic Ddx19a NA NA intronic Ddx19a NA NA intronic ENSMUSG00000015023 NA NA 8qE1 "Score=0.984184;Name=No.104262,chr8:113531986" NA chr8 113502650 GTAxAGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP UNCOVERED 0 0.457757 0 47 0 8 23.954107 0.47619 0.02 -0.184099 11 10 301 255 46 60 0 0 GG 5.714791 19 0 531 0 KEEP - Ddx19a YES MNNG_4 chr8 113782732 113782732 C T exonic Glg1 nonsynonymous SNV NM_009149:c.G365A:p.C122Y exonic Glg1 nonsynonymous SNV uc009nma.1:c.G365A:p.C122Y exonic ENSMUSG00000003316 nonsynonymous SNV ENSMUST00000003404:c.G365A:p.C122Y 8qE1 NA NA chr8 113782732 GGGxACA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 108 2 0 60.639815 0.568182 0.02 -0.385654 19 25 511 618 60 60 0 0 CC 16.241642 54 0 1511 0 KEEP - Glg1 YES MNNG_4 chr8 114413662 114413662 G A UTR3 Chst5 NA NA UTR3 Chst5 NA NA UTR3 ENSMUSG00000031952 NA NA 8qE1 NA NA chr8 114413662 ATAxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.386567 0.387407 0.997832 39 0 0 34.673738 0.65 0.02 -0.175254 7 13 185 341 60 60 0 0 GG 4.813284 16 0 459 0 KEEP - Chst5 YES MNNG_4 chr8 114414423 114414423 G A exonic Chst5 nonsynonymous SNV NM_019950:c.C464T:p.T155M exonic Chst5 nonsynonymous SNV uc009nmz.1:c.C464T:p.T155M exonic ENSMUSG00000031952 nonsynonymous SNV ENSMUST00000034430:c.C464T:p.T155M 8qE1 NA NA chr8 114414423 CGCxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984158 0.984161 0.999997 96 0 0 97.459457 0.637931 0.02 0.991725 21 37 498 963 60 60 0 0 GG 8.71537 29 0 733 0 KEEP - Chst5 YES MNNG_4 chr8 114529640 114529640 C T exonic Kars synonymous SNV NM_053092:c.G108A:p.E36E exonic Kars synonymous SNV uc009nne.2:c.G108A:p.E36E exonic ENSMUSG00000031948 synonymous SNV ENSMUST00000034426:c.G108A:p.E36E 8qE1 NA NA chr8 114529640 GGCxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 139 6 0 11.04349 0.113208 0.02 1.221728 47 6 1294 163 60 37 0 0 CC 25.248577 84 0 2330 0 KEEP - Kars YES MNNG_4 chr8 11505390 11505390 G A intronic Carkd NA NA intronic Carkd NA NA intronic ENSMUSG00000031505 NA NA 8qA1.1 NA NA chr8 11505390 CCTxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 74 0 0 46.656504 0.612903 0.02 -0.368083 12 19 322 466 60 60 0 0 GG 9.024537 30 0 854 0 KEEP + Carkd YES MNNG_4 chr8 116275055 116275055 G A exonic Adamts18 nonsynonymous SNV NM_172466:c.C1805T:p.S602F exonic Adamts18 nonsynonymous SNV uc009nns.1:c.C1289T:p.S430F exonic ENSMUSG00000053399 nonsynonymous SNV ENSMUST00000035369:c.C1289T:p.S430F 8qE1 NA NA chr8 116275055 CGAxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 70 2 0 38.586513 0.444444 0.02 -0.315634 20 16 556 417 60 60 0 0 GG 8.423199 28 0 801 0 KEEP - Adamts18 YES MNNG_4 chr8 116675733 116675733 G A exonic Nudt7 synonymous SNV NM_024437:c.G528A:p.E176E exonic Nudt7 synonymous SNV uc012glf.1:c.G441A:p.E147E exonic ENSMUSG00000031767 synonymous SNV ENSMUST00000066514:c.G441A:p.E147E 8qE1 NA NA chr8 116675733 CGAxTAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 100 0 0 48.310899 0.47619 0.02 -0.376965 22 20 605 514 60 60 0 0 GG 14.739532 49 0 1384 0 KEEP + Nudt7 YES MNNG_4 chr8 122139989 122139989 G A exonic Adad2 nonsynonymous SNV NM_029428:c.G1373A:p.S458N exonic Adad2 nonsynonymous SNV uc009nqa.2:c.G1373A:p.S458N exonic ENSMUSG00000024266 nonsynonymous SNV ENSMUST00000098361:c.G1373A:p.S458N 8qE1 NA NA chr8 122139989 CCAxCAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 402 2 0 208.70713 0.584507 0.02 3.529322 59 83 1548 2109 60 60 1 0 GG 49.043563 165 0 4105 0 KEEP + Adad2 YES MNNG_4 chr8 122542854 122542854 G A splicing Crispld2(NM_030209:exon6:c.709+1G>A) NA NA splicing "Crispld2(uc012glu.1:exon6:c.709+1G>A,uc012glv.1:exon6:c.709+1G>A,uc009nqq.2:exon6:c.709+1G>A)" NA NA splicing "ENSMUSG00000031825(ENSMUST00000132583:exon6:c.709+1G>A,ENSMUST00000034282:exon6:c.709+1G>A,ENSMUST00000108972:exon6:c.709+1G>A)" NA NA 8qE1 NA NA chr8 122542854 GAGxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 99 0 0 61.149664 0.615385 0.02 -0.350633 15 24 395 610 60 60 0 0 GG 13.830583 46 0 1234 0 KEEP + Crispld2 YES MNNG_4 chr8 123641945 123641945 G A exonic Foxc2 synonymous SNV NM_013519:c.G1431A:p.T477T exonic Foxc2 synonymous SNV uc012glx.1:c.G1431A:p.T477T exonic ENSMUSG00000046714 synonymous SNV ENSMUST00000054691:c.G1431A:p.T477T 8qE1 NA NA chr8 123641945 TACxCCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 152 0 0 47.333528 0.458333 0.02 -0.417873 26 22 635 514 60 60 0 0 GG 24.86879 83 0 2083 0 KEEP + Foxc2 YES MNNG_4 chr8 124064463 124064463 G A exonic 1700018B08Rik nonsynonymous SNV NM_029597:c.C55T:p.P19S exonic 1700018B08Rik nonsynonymous SNV uc009nrt.1:c.C55T:p.P19S exonic ENSMUSG00000031809 nonsynonymous SNV ENSMUST00000034265:c.C55T:p.P19S 8qE1 NA NA chr8 124064463 AAGxTCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992925 0.992926 0.999999 115 0 0 81.37552 0.515625 0.02 1.036298 31 33 826 849 60 60 0 0 GG 10.813604 36 0 946 0 KEEP - 1700018B08Rik YES MNNG_4 chr8 124308473 124308473 G A exonic Jph3 synonymous SNV NM_020605:c.G1299A:p.Q433Q exonic Jph3 synonymous SNV uc009nrz.1:c.G1299A:p.Q433Q exonic ENSMUSG00000025318 synonymous SNV ENSMUST00000026357:c.G1299A:p.Q433Q 8qE1 NA NA chr8 124308473 CCAxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 140 0 0 50.598032 0.487805 0.02 -0.359501 21 20 587 534 60 60 0 0 GG 22.260692 74 0 2120 0 KEEP + Jph3 YES MNNG_4 chr8 124468581 124468581 C T exonic Car5a nonsynonymous SNV NM_007608:c.G113A:p.S38N exonic Car5a nonsynonymous SNV uc009nsf.1:c.G113A:p.S38N exonic ENSMUSG00000025317 nonsynonymous SNV ENSMUST00000057653:c.G113A:p.S38N 8qE1 NA NA chr8 124468581 TTGxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 75 0 0 40.856658 0.447368 0.02 -0.333168 21 17 578 441 60 60 0 0 CC 8.422734 28 0 793 0 KEEP - Car5a YES MNNG_4 chr8 125145622 125145622 G A intronic Pabpn1l NA NA intronic Pabpn1l NA NA intronic "ENSMUSG00000069867,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 125145622 TAGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 106 0 0 51.495515 0.5 0.02 -0.350716 20 20 541 540 60 60 0 0 GG 15.941302 53 0 1475 0 KEEP - Pabpn1l YES MNNG_4 chr8 125307874 125307874 G A exonic Acsf3 nonsynonymous SNV NM_144932:c.G850A:p.A284T exonic Acsf3 nonsynonymous SNV uc009ntr.1:c.G850A:p.A284T exonic ENSMUSG00000015016 nonsynonymous SNV ENSMUST00000015160:c.G850A:p.A284T 8qE1 NA NA chr8 125307874 GAAxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 146 4 0 71.358882 0.5 0.02 1.080124 29 29 793 750 60 60 0 0 GG 19.840551 66 0 1835 0 KEEP + Acsf3 YES MNNG_4 chr8 125391518 125391518 C T downstream Cdh15 NA NA downstream Cdh15 NA NA intronic ENSMUSG00000092329 NA NA 8qE1 NA NA chr8 125391518 GGTxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 137 0 0 84.684465 0.472222 0.02 1.063991 38 34 1032 901 60 60 0 0 CC 15.332449 51 0 1437 0 KEEP + Cdh15 YES MNNG_4 chr8 125837251 125837251 G A exonic Fanca synonymous SNV NM_016925:c.C306T:p.A102A exonic Fanca synonymous SNV uc009nve.2:c.C306T:p.A102A exonic ENSMUSG00000032815 synonymous SNV ENSMUST00000127904:c.C12T:p.A4A 8qE1 NA NA chr8 125837251 CGAxGCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.420544 0.423478 0.993072 35 0 0 26.058298 0.47619 0.02 -0.184129 11 10 295 276 60 60 0 0 GG 3.308631 11 0 306 0 KEEP - Fanca YES MNNG_4 chr8 125926971 125926971 C T intronic Tcf25 NA NA UTR3 Tcf25 NA NA intronic "ENSMUSG00000001472,ENSMUSG00000092329" NA NA 8qE1 NA NA chr8 125926971 GGAxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 86 0 0 47.074172 0.542857 0.02 -0.306823 16 19 427 485 60 60 0 0 CC 12.029343 40 0 1094 0 KEEP + Tcf25 YES MNNG_4 chr8 126552788 126552788 G A exonic Urb2 nonsynonymous SNV NM_001029876:c.G1333A:p.A445T exonic Urb2 nonsynonymous SNV uc009nwy.1:c.G1333A:p.A445T exonic ENSMUSG00000031976 nonsynonymous SNV ENSMUST00000034457:c.G1333A:p.A445T 8qE2 NA NA chr8 126552788 CGAxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 112 0 0 54.545215 0.488889 0.02 -0.394552 23 22 639 576 60 60 0 0 GG 15.341486 51 0 1447 0 KEEP + Urb2 YES MNNG_4 chr8 128196833 128196833 C T UTR3 Map10 NA NA UTR3 4933403G14Rik NA NA UTR3 ENSMUSG00000050930 NA NA 8qE2 NA NA chr8 128196833 GATxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999997 75 0 0 45.147133 0.463415 0.02 -0.357123 22 19 572 484 60 60 0 0 CC 9.023062 30 0 835 0 KEEP + Map10 YES MNNG_4 chr8 128951986 128951986 G A exonic Gm17296 nonsynonymous SNV NM_001159907:c.C4298T:p.T1433I exonic Tarbp1 nonsynonymous SNV uc012gne.1:c.C4298T:p.T1433I exonic ENSMUSG00000090290 nonsynonymous SNV ENSMUST00000170518:c.C4298T:p.T1433I 8qE2 NA NA chr8 128951986 TTGxTCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 100 0 0 57.121523 0.511111 0.02 -0.403278 22 23 593 597 60 60 0 0 GG 12.582315 42 0 1109 0 KEEP - Gm17296 YES MNNG_4 chr8 129489351 129489351 G A exonic Rbm34 synonymous SNV NM_172762:c.C540T:p.P180P exonic Rbm34 synonymous SNV uc009nzb.1:c.C540T:p.P180P exonic ENSMUSG00000033931 synonymous SNV ENSMUST00000045994:c.C540T:p.P180P 8qE2 NA NA chr8 129489351 TTCxGGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 147 1 0 75.068664 0.454545 0.02 1.010217 36 30 882 805 60 60 0 0 GG 18.628626 62 0 1589 0 KEEP - Rbm34 YES MNNG_4 chr8 13365151 13365151 C T exonic Tfdp1 nonsynonymous SNV NM_009361:c.C142T:p.P48S exonic Tfdp1 nonsynonymous SNV uc009kxt.1:c.C142T:p.P48S exonic ENSMUSG00000038482 nonsynonymous SNV ENSMUST00000170909:c.C142T:p.P48S 8qA1.1 NA NA chr8 13365151 TTGxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 126 0 0 52.755858 0.478261 0.02 -0.403238 24 22 650 561 60 60 0 0 CC 17.445797 58 0 1617 0 KEEP + Tfdp1 YES MNNG_4 chr8 23982030 23982030 G A intronic Kat6a NA NA intronic Myst3 NA NA intronic ENSMUSG00000031540 NA NA 8qA2 NA NA chr8 23982030 GGGxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 101 3 0 37.308905 0.380952 0.02 -0.368249 26 16 716 418 60 60 0 0 GG 13.233895 44 0 1216 0 KEEP + Kat6a YES MNNG_4 chr8 26707672 26707672 C T UTR5 Letm2 NA NA UTR5 Letm2 NA NA ncRNA_exonic ENSMUSG00000043794 NA NA 8qA2 NA NA chr8 26707672 GCCxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.520328 0.522161 0.99649 44 0 0 32.706666 0.541667 0.02 -0.210416 11 13 304 337 60 60 0 0 CC 4.510408 15 0 403 0 KEEP - Letm2 YES MNNG_4 chr8 32277238 32277238 G A intronic Mak16 NA NA intronic Mak16 NA NA intronic ENSMUSG00000031578 NA NA 8qA3 NA NA chr8 32277238 CAAxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 139 0 0 70.292567 0.491228 0.02 1.088795 29 28 812 741 60 60 0 0 GG 18.650467 62 0 1770 0 KEEP - Mak16 YES MNNG_4 chr8 32941669 32941669 G A intronic Nrg1 NA NA intronic Nrg1 NA NA intronic ENSMUSG00000062991 NA NA 8qA3 NA NA chr8 32941669 TTGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 45 0 0 18.569146 0.4 0.02 -0.175333 12 8 318 206 60 60 0 0 GG 5.113305 17 0 472 0 KEEP - Nrg1 YES MNNG_4 chr8 3496831 3496831 C T exonic Zfp358 nonsynonymous SNV NM_080461:c.C1412T:p.S471F exonic Zfp358 nonsynonymous SNV uc009krp.1:c.C1412T:p.S471F exonic ENSMUSG00000047264 nonsynonymous SNV ENSMUST00000061508:c.C1412T:p.S471F 8qA1.1 NA NA chr8 3496831 CTTxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 142 0 0 66.652091 0.509804 0.02 1.150271 25 26 693 696 60 60 0 0 CC 19.246238 64 0 1832 0 KEEP + Zfp358 YES MNNG_4 chr8 3510566 3510566 G A exonic Mcoln1 synonymous SNV NM_053177:c.G1011A:p.R337R exonic Mcoln1 synonymous SNV uc009krq.1:c.G1011A:p.R337R exonic ENSMUSG00000004567 synonymous SNV ENSMUST00000004683:c.G1011A:p.R337R 8qA1.1 NA NA chr8 3510566 GCGxCGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 142 0 0 56.723035 0.390625 0.02 0.930195 39 25 1067 634 60 60 0 0 GG 21.030547 70 0 1894 0 KEEP + Mcoln1 YES MNNG_4 chr8 36652746 36652746 G A exonic Mfhas1 synonymous SNV NM_001081279:c.G1320A:p.E440E exonic Mfhas1 synonymous SNV uc009lla.1:c.G1320A:p.E440E exonic ENSMUSG00000070056 synonymous SNV ENSMUST00000037666:c.G1320A:p.E440E 8qA4 NA NA chr8 36652746 GGAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 158 0 0 90.9682 0.445783 0.02 0.96747 46 37 1276 981 60 60 0 0 GG 17.437835 58 0 1621 0 KEEP + Mfhas1 YES MNNG_4 chr8 37575186 37575186 G A exonic 6430573F11Rik synonymous SNV NM_176952:c.G888A:p.E296E exonic "6430573F11Rik,Kiaa1456" synonymous SNV uc009llp.1:c.G627A:p.E209E exonic ENSMUSG00000039620 synonymous SNV ENSMUST00000171777:c.G888A:p.E296E 8qA4 NA NA chr8 37575186 GGAxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 82 0 0 54.811006 0.636364 0.02 -0.289309 12 21 330 542 60 60 0 0 GG 13.500145 45 0 1225 0 KEEP + 6430573F11Rik YES MNNG_4 chr8 37575525 37575525 G A exonic 6430573F11Rik synonymous SNV NM_176952:c.G1227A:p.R409R exonic "6430573F11Rik,Kiaa1456" synonymous SNV uc009llp.1:c.G966A:p.R322R exonic ENSMUSG00000039620 synonymous SNV ENSMUST00000171777:c.G1227A:p.R409R 8qA4 NA NA chr8 37575525 TCGxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 43 0 0 28.666444 0.55 0.02 -0.175362 9 11 249 294 60 60 0 0 GG 5.411527 18 0 485 0 KEEP + 6430573F11Rik YES MNNG_4 chr8 44712502 44712502 A G exonic Gm5346 nonsynonymous SNV NM_001025240:c.T38C:p.M13T exonic Gm5346 nonsynonymous SNV uc009log.1:c.T38C:p.M13T exonic ENSMUSG00000050190 nonsynonymous SNV ENSMUST00000056023:c.T38C:p.M13T 8qA4 NA NA chr8 44712502 AACxTGT A G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 370 0 0 68.399889 0.248322 0.02 1.791523 112 37 2889 870 60 60 0 0 AA 52.013324 173 0 4646 0 KEEP - Gm5346 NO MNNG_4 chr8 46122267 46122267 G A exonic Fat1 nonsynonymous SNV NM_001081286:c.G10792A:p.G3598R exonic Fat1 nonsynonymous SNV uc009lom.1:c.G715A:p.G239R exonic ENSMUSG00000070047 nonsynonymous SNV ENSMUST00000093529:c.G10792A:p.G3598R 8qB1.1 NA NA chr8 46122267 ACGxGGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 125 1 0 59.891745 0.45283 0.02 1.132636 29 24 799 643 60 60 0 0 GG 17.144247 57 0 1583 0 KEEP + Fat1 YES MNNG_4 chr8 46433773 46433773 G A intronic Fam149a NA NA intronic Fam149a NA NA intronic ENSMUSG00000070044 NA NA 8qB1.1 NA NA chr8 46433773 AGAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 53 0 0 26.897055 0.44 0.02 -0.219207 14 11 393 291 60 60 0 0 GG 6.919047 23 0 659 0 KEEP - Fam149a YES MNNG_4 chr8 49314418 49314418 C T exonic Tenm3 synonymous SNV NM_001145937:c.G7482A:p.S2494S exonic Odz3 synonymous SNV uc009lrr.2:c.G7482A:p.S2494S exonic ENSMUSG00000031561 synonymous SNV ENSMUST00000110348:c.G6975A:p.S2325S 8qB1.2 NA NA chr8 49314418 GAGxGAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 98 2 0 58.215573 0.48 0.02 -0.437977 26 24 610 618 60 60 0 0 CC 10.759927 36 0 847 0 KEEP - Tenm3 YES MNNG_4 chr8 49320684 49320684 G A exonic Tenm3 synonymous SNV NM_001145937:c.C7173T:p.N2391N exonic Odz3 synonymous SNV uc009lrr.2:c.C7173T:p.N2391N exonic ENSMUSG00000031561 synonymous SNV ENSMUST00000110348:c.C6666T:p.N2222N 8qB1.2 NA NA chr8 49320684 GGGxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 67 0 0 34.552271 0.518519 0.02 -0.236705 13 14 353 360 60 60 0 0 GG 9.924113 33 0 901 0 KEEP - Tenm3 YES MNNG_4 chr8 63568459 63568459 C T exonic Nek1 nonsynonymous SNV NM_175089:c.C2069T:p.T690I exonic Nek1 nonsynonymous SNV uc012gef.1:c.C1994T:p.T665I exonic ENSMUSG00000031644 nonsynonymous SNV ENSMUST00000172204:c.C1994T:p.T665I 8qB3.1 NA NA chr8 63568459 AGAxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.667074 0.668523 0.997832 52 0 0 46.717026 0.62069 0.02 -0.254232 11 18 298 465 60 60 0 0 CC 4.812061 16 0 436 0 KEEP + Nek1 YES MNNG_4 chr8 64199412 64199412 C T exonic Palld nonsynonymous SNV NM_001081390:c.G1009A:p.V337I exonic Palld nonsynonymous SNV uc009luf.1:c.G1009A:p.V337I exonic ENSMUSG00000058056 nonsynonymous SNV ENSMUST00000036243:c.G1009A:p.V337I 8qB3.1 NA NA chr8 64199412 TGAxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 140 0 0 58.123902 0.470588 0.02 1.052908 27 24 734 620 60 60 0 0 CC 22.253465 74 0 2057 0 KEEP - Palld YES MNNG_4 chr8 67480277 67480277 C T intronic Tmem192 NA NA intronic Tmem192 NA NA intronic ENSMUSG00000025521 NA NA 8qB3.1 NA NA chr8 67480277 TTCxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 109 0 0 46.610232 0.395833 0.02 -0.419521 29 19 774 515 60 60 0 0 CC 12.922999 43 0 1175 0 KEEP + Tmem192 YES MNNG_4 chr8 67525237 67525237 C T exonic Trim60 synonymous SNV NM_153097:c.G258A:p.K86K exonic Trim60 synonymous SNV uc009lve.2:c.G258A:p.K86K exonic ENSMUSG00000053490 synonymous SNV ENSMUST00000048565:c.G258A:p.K86K 8qB3.1 NA NA chr8 67525237 CCTxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 119 2 0 63.972232 0.510204 0.02 -0.429645 24 25 669 668 60 60 0 0 CC 14.741195 49 0 1415 0 KEEP - Trim60 YES MNNG_4 chr8 70071509 70071509 C T exonic Nat3 nonsynonymous SNV NM_008674:c.C140T:p.T47I exonic Nat3 nonsynonymous SNV uc009lvy.1:c.C140T:p.T47I exonic ENSMUSG00000056426 nonsynonymous SNV ENSMUST00000070514:c.C140T:p.T47I 8qB3.3 NA NA chr8 70071509 AAAxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 89 0 0 58.39338 0.510638 0.02 -0.412016 23 24 616 611 60 60 0 0 CC 8.421616 28 0 773 0 KEEP + Nat3 YES MNNG_4 chr8 71597628 71597628 C T exonic Slc18a1 stopgain SNV NM_153054:c.G306A:p.W102X exonic Slc18a1 stopgain SNV uc009lwv.1:c.G306A:p.W102X exonic ENSMUSG00000036330 stopgain SNV ENSMUST00000037478:c.G306A:p.W102X 8qB3.3 NA NA chr8 71597628 TATxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999998 70 0 0 34.772778 0.466667 0.02 -0.263039 16 14 441 371 60 60 0 0 CC 10.227177 34 0 955 0 KEEP - Slc18a1 YES MNNG_4 chr8 72459692 72459692 C T exonic Gatad2a nonsynonymous SNV NM_001113345:c.G243A:p.M81I exonic Gatad2a nonsynonymous SNV uc009lyf.2:c.G243A:p.M81I exonic ENSMUSG00000036180 nonsynonymous SNV ENSMUST00000065169:c.G243A:p.M81I 8qB3.3 NA NA chr8 72459692 GCGxATG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 200 0 0 95.588757 0.476744 0.02 0.640715 45 41 1222 1019 60 60 0 0 CC 26.46825 88 0 2474 0 KEEP - Gatad2a YES MNNG_4 chr8 72781113 72781113 C T exonic Sugp2 synonymous SNV NM_001168290:c.C2484T:p.S828S exonic Sugp2 synonymous SNV uc009lzl.2:c.C2484T:p.S828S exonic ENSMUSG00000036054 synonymous SNV ENSMUST00000093458:c.C2484T:p.S828S 8qB3.3 NA NA chr8 72781113 GTCxACT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 89 2 0 38.797738 0.484848 0.02 -0.289305 17 16 467 411 60 60 0 0 CC 12.63448 42 0 1199 0 KEEP + Sugp2 YES MNNG_4 chr8 73312817 73312817 C T exonic Mast3 nonsynonymous SNV NM_199308:c.G449A:p.G150D exonic Mast3 nonsynonymous SNV uc009mbp.2:c.G449A:p.G150D exonic ENSMUSG00000031833 nonsynonymous SNV ENSMUST00000166004:c.G449A:p.G150D 8qB3.3 NA NA chr8 73312817 CGGxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 135 1 0 75.190536 0.516667 0.02 0.956891 29 31 781 785 60 60 0 0 CC 16.713144 56 0 1486 0 KEEP - Mast3 YES MNNG_4 chr8 73419505 73419505 C T exonic Rpl18a synonymous SNV NM_029751:c.G432A:p.Q144Q exonic "Gm15427,Rpl18a" synonymous SNV uc009mca.2:c.G468A:p.Q156Q exonic ENSMUSG00000045128 synonymous SNV ENSMUST00000054220:c.G432A:p.Q144Q 8qB3.3 NA NA chr8 73419505 GAAxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 40 0 3 13.764655 0.375 0.02 -0.140266 10 6 264 155 60 60 0 0 CC 6.916825 23 0 639 0 KEEP - Rpl18a YES MNNG_4 chr8 73611740 73611740 C T intergenic "1700026F02Rik(dist=61086),Haus8(dist=163283)" NA NA ncRNA_exonic AK029875 NA NA intergenic "ENSMUSG00000091388(dist=44801),ENSMUSG00000035439(dist=160720)" NA NA 8qB3.3 "Score=0.951585;Name=No.104211,chr8:74365581" NA chr8 73611740 CAAxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 105 0 0 34.993001 0.583333 0.02 -0.210355 10 14 260 354 60 60 0 0 CC 18.336744 61 0 1651 0 KEEP NA 1700026F02Rik YES MNNG_4 chr8 74154483 74154483 C T exonic Unc13a synonymous SNV NM_001029873:c.G4770A:p.K1590K exonic Unc13a synonymous SNV uc009mei.2:c.G4770A:p.K1590K exonic ENSMUSG00000034799 synonymous SNV ENSMUST00000030170:c.G4770A:p.K1590K 8qB3.3 NA NA chr8 74154483 TTTxTTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 172 2 0 118.624133 0.6 0.02 0.930983 30 45 842 1191 60 60 0 0 CC 21.359093 71 0 2038 0 KEEP - Unc13a YES MNNG_4 chr8 74210911 74210911 C T intronic Jak3 NA NA intronic "Insl3,Jak3" NA NA intronic ENSMUSG00000031805 NA NA 8qB3.3 NA NA chr8 74210911 GATxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 307 2 0 107.93953 0.359375 0.02 2.072427 82 46 2260 1223 60 60 0 0 CC 39.408652 131 0 3763 0 KEEP + Jak3 YES MNNG_4 chr8 74979317 74979317 C T exonic 1700030K09Rik nonsynonymous SNV NM_028170:c.C1391T:p.T464I exonic 1700030K09Rik nonsynonymous SNV uc009mfy.2:c.C1391T:p.T464I exonic ENSMUSG00000052794 nonsynonymous SNV ENSMUST00000064853:c.C1391T:p.T464I 8qB3.3 NA NA chr8 74979317 ACAxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 78 0 0 62.416131 0.648649 0.02 -0.324354 13 24 353 614 60 60 0 0 CC 9.323424 31 0 861 0 KEEP + 1700030K09Rik YES MNNG_4 chr8 75020560 75020560 C T exonic Med26 nonsynonymous SNV NM_027485:c.G593A:p.G198D exonic Med26 nonsynonymous SNV uc009mgg.2:c.G593A:p.G198D exonic ENSMUSG00000045248 nonsynonymous SNV ENSMUST00000058534:c.G593A:p.G198D 8qB3.3 NA NA chr8 75020560 CTGxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 249 0 0 104.86708 0.39823 0.02 2.106721 68 45 1844 1164 60 60 0 0 CC 29.774089 99 0 2725 0 KEEP - Med26 YES MNNG_4 chr8 75247951 75247951 C T exonic Sin3b synonymous SNV NM_001113248:c.C108T:p.D36D exonic Sin3b synonymous SNV uc009mgo.3:c.C108T:p.D36D exonic ENSMUSG00000031622 synonymous SNV ENSMUST00000004494:c.C108T:p.D36D 8qB3.3 NA NA chr8 75247951 GGAxGCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.60867 0.612407 0.993897 62 0 0 41.302248 0.592593 0.02 -0.236668 11 16 278 416 60 60 0 0 CC 7.798411 26 0 639 0 KEEP + Sin3b YES MNNG_4 chr8 75274446 75274446 C T exonic Sin3b nonsynonymous SNV NM_009188:c.C2441T:p.T814I exonic Sin3b nonsynonymous SNV uc012gfz.1:c.C1613T:p.T538I exonic ENSMUSG00000031622 nonsynonymous SNV ENSMUST00000004494:c.C2441T:p.T814I 8qB3.3 NA NA chr8 75274446 TCAxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.456764 0.457757 0.997832 46 0 0 23.883654 0.454545 0.02 -0.192874 12 10 326 257 60 60 0 0 CC 4.812193 16 0 438 0 KEEP + Sin3b YES MNNG_4 chr8 75655937 75655937 C T exonic Large synonymous SNV NM_010687:c.G201A:p.V67V exonic Large synonymous SNV uc009mgs.1:c.G201A:p.V67V exonic ENSMUSG00000004383 synonymous SNV ENSMUST00000004497:c.G201A:p.V67V 8qB3.3 NA NA chr8 75655937 ACGxACT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 98 0 0 59.861218 0.5 0.02 -0.438326 25 25 685 630 60 60 0 0 CC 12.312815 41 0 1138 0 KEEP - Large YES MNNG_4 chr8 77547900 77547900 C T exonic Hmgxb4 nonsynonymous SNV NM_178017:c.C1451T:p.S484F exonic Hmgxb4 nonsynonymous SNV uc009mgz.1:c.C242T:p.S81F exonic ENSMUSG00000034518 nonsynonymous SNV ENSMUST00000109940:c.C260T:p.S87F 8qC1 NA NA chr8 77547900 CCTxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 126 2 0 33.519488 0.378378 0.02 -0.394566 23 14 638 375 60 60 0 0 CC 19.244897 64 0 1813 0 KEEP + Hmgxb4 YES MNNG_4 chr8 77624332 77624332 C T UTR3 Hmox1 NA NA UTR3 Hmox1 NA NA exonic ENSMUSG00000005413 synonymous SNV ENSMUST00000098626:c.C340T:p.L114L 8qC1 NA NA chr8 77624332 GTTxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 75 0 0 56.66511 0.52381 0.02 -0.368267 20 22 558 588 60 60 0 0 CC 9.324633 31 0 874 0 KEEP + Hmox1 YES MNNG_4 chr8 78236832 78236832 C T intronic 1700007B14Rik NA NA intronic 1700007B14Rik NA NA ncRNA_exonic ENSMUSG00000082280 NA NA 8qC1 "Score=0.978237;Name=No.102287,chr7:144002499" NA chr8 78236832 TGGxAGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.421991 0.423478 0.99649 43 1 4 21.580947 0.473684 0.02 -0.184121 10 9 282 230 60 60 0 0 CC 5.11348 17 0 476 0 KEEP + 1700007B14Rik YES MNNG_4 chr8 78508117 78508117 G A exonic 1700007B14Rik nonsynonymous SNV NM_027944:c.G1393A:p.A465T exonic 1700007B14Rik nonsynonymous SNV uc009mhj.2:c.G1393A:p.A465T exonic ENSMUSG00000031620 nonsynonymous SNV ENSMUST00000034033:c.G1393A:p.A465T 8qC1 NA NA chr8 78508117 AGAxCTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 75 0 0 18.762451 0.347826 0.02 -0.210432 15 8 416 214 60 60 0 0 GG 11.430958 38 0 1079 0 KEEP + 1700007B14Rik YES MNNG_4 chr8 81896102 81896102 C T UTR5 Smad1 NA NA UTR5 Smad1 NA NA UTR5 ENSMUSG00000031681 NA NA 8qC2 NA NA chr8 81896102 CTAxACG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 333 2 0 103.044345 0.48913 0.02 0.596948 47 45 1295 1093 60 60 0 0 CC 53.766571 179 0 4987 0 KEEP - Smad1 YES MNNG_4 chr8 83539169 83539169 C T upstream Usp38 NA NA ncRNA_intronic AK028622 NA NA ncRNA_intronic ENSMUSG00000037982 NA NA 8qC2 NA NA chr8 83539169 AGAxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 62 0 0 24.28443 0.454545 0.02 -0.201645 12 10 324 261 60 60 0 0 CC 9.923812 33 0 894 0 KEEP - Usp38 YES MNNG_4 chr8 85818063 85818063 C T intronic Ucp1 NA NA intronic Ucp1 NA NA intronic ENSMUSG00000031710 NA NA 8qC2 NA NA chr8 85818063 ATGxTGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760854 0.760887 0.999957 64 0 0 29.686811 0.393939 0.02 -0.289304 20 13 557 331 60 60 0 0 CC 7.82103 26 0 735 0 KEEP + Ucp1 YES MNNG_4 chr8 86095873 86095873 C T intronic Tecr NA NA intronic Tecr NA NA intronic ENSMUSG00000031708 NA NA 8qC2 NA NA chr8 86095873 TTGxTGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.781006 0.78106 0.999931 68 0 0 29.875604 0.382353 0.02 -0.298101 21 13 587 335 60 60 0 0 CC 7.520015 25 0 705 0 KEEP - Tecr YES MNNG_4 chr8 86096341 86096341 C T exonic Tecr nonsynonymous SNV NM_027179:c.G575A:p.G192E exonic Tecr nonsynonymous SNV uc009mkl.2:c.G227A:p.G76E exonic ENSMUSG00000031708 nonsynonymous SNV ENSMUST00000165740:c.G575A:p.G192E 8qC2 NA NA chr8 86096341 TTCxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227502 0.229173 0.992708 26 0 0 14.677735 0.4 0.02 -0.131515 9 6 242 162 60 60 0 0 CC 3.008025 10 0 281 0 KEEP - Tecr YES MNNG_4 chr8 87125870 87125870 G A exonic Cacna1a synonymous SNV NM_001252059:c.G4896A:p.E1632E exonic Cacna1a synonymous SNV uc012ghk.1:c.G3606A:p.E1202E exonic ENSMUSG00000034656 synonymous SNV ENSMUST00000122053:c.G4896A:p.E1632E 8qC3 NA NA chr8 87125870 CGAxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 210 0 0 128.437044 0.448276 0.02 2.177713 64 52 1753 1383 60 60 0 0 GG 23.460611 78 0 2180 0 KEEP + Cacna1a YES MNNG_4 chr8 87362244 87362244 G A intronic Rad23a NA NA intronic Rad23a NA NA intronic ENSMUSG00000003813 NA NA 8qC3 NA NA chr8 87362244 AGAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 168 1 0 82.490235 0.478261 0.02 0.895019 36 33 990 875 60 60 0 0 GG 24.065923 80 0 2285 0 KEEP - Rad23a YES MNNG_4 chr8 87388221 87388221 G A exonic Farsa nonsynonymous SNV NM_025648:c.G688A:p.V230I exonic Farsa nonsynonymous SNV uc009mnr.2:c.G688A:p.V230I exonic ENSMUSG00000003808 nonsynonymous SNV ENSMUST00000003906:c.G688A:p.V230I 8qC3 NA NA chr8 87388221 AAGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 174 0 0 115.609747 0.51087 0.02 0.790842 45 47 1223 1209 60 60 0 0 GG 21.354181 71 0 1956 0 KEEP + Farsa YES MNNG_4 chr8 87434608 87434608 G A exonic Dnase2a nonsynonymous SNV NM_010062:c.G739A:p.E247K exonic Dnase2a nonsynonymous SNV uc009moa.1:c.G739A:p.E247K exonic ENSMUSG00000003812 nonsynonymous SNV ENSMUST00000003910:c.G739A:p.E247K 8qC3 NA NA chr8 87434608 GCAxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.999859 46 0 0 36.593815 0.583333 0.02 -0.21042 10 14 274 370 60 60 0 0 GG 5.414988 18 0 517 0 KEEP + Dnase2a YES MNNG_4 chr8 87543607 87543607 G A intronic Asna1 NA NA intronic Asna1 NA NA intronic ENSMUSG00000052456 NA NA 8qC3 NA NA chr8 87543607 GAGxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888759 0.888875 0.999869 66 0 0 32.239611 0.384615 0.02 -0.34994 24 15 616 364 70 60 0 0 GG 6.309988 21 0 560 0 KEEP - Asna1 YES MNNG_4 chr8 89720627 89720627 G A ncRNA_intronic Gm10637 NA NA ncRNA_exonic AK139810 NA NA intergenic "ENSMUSG00000066362(dist=148553),ENSMUSG00000031654(dist=272134)" NA NA 8qC3 NA NA chr8 89720627 AGGxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098994 0.099721 0.992708 24 0 0 12.673226 0.5 0.02 -0.087683 5 5 140 133 60 60 0 0 GG 3.007931 10 0 279 0 KEEP - Gm10637 YES MNNG_4 chr8 90839437 90839437 G A exonic Adcy7 synonymous SNV NM_001037723:c.G1164A:p.G388G exonic Adcy7 synonymous SNV uc009mrh.2:c.G1164A:p.G388G exonic ENSMUSG00000031659 synonymous SNV ENSMUST00000098521:c.G1164A:p.G388G 8qC3 NA NA chr8 90839437 CGGxCTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 96 0 0 38.359187 0.377778 0.02 -0.393977 28 17 733 432 60 60 0 0 GG 11.128842 37 0 1026 0 KEEP + Adcy7 YES MNNG_4 chr8 91557110 91557110 G A exonic Sall1 synonymous SNV NM_021390:c.C264T:p.G88G exonic Sall1 synonymous SNV uc009msa.2:c.C264T:p.G88G exonic ENSMUSG00000031665 synonymous SNV ENSMUST00000034090:c.C264T:p.G88G 8qC3 NA NA chr8 91557110 CGGxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.386567 0.387407 0.997832 41 0 0 26.540513 0.55 0.02 -0.175104 9 11 248 273 60 60 0 0 GG 4.812394 16 0 444 0 KEEP - Sall1 YES MNNG_4 chr8 92781976 92781976 T A exonic Tox3 nonsynonymous SNV NM_172913:c.A473T:p.H158L exonic Tox3 nonsynonymous SNV uc009msb.2:c.A473T:p.H158L exonic ENSMUSG00000043668 nonsynonymous SNV ENSMUST00000109621:c.A473T:p.H158L 8qC4 NA NA chr8 92781976 ATAxGGA T A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423432 0.423478 0.999892 51 0 0 25.758684 0.47619 0.02 -0.184109 11 10 284 273 60 60 0 0 TT 6.916983 23 0 622 0 KEEP - Tox3 NO MNNG_4 chr8 95830782 95830782 G A exonic Ces1g synonymous SNV NM_021456:c.C1410T:p.L470L exonic Ces1g synonymous SNV uc009muq.2:c.C1410T:p.L470L exonic ENSMUSG00000057074 synonymous SNV ENSMUST00000044602:c.C1410T:p.L470L 8qC5 NA NA chr8 95830782 AAAxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 88 2 0 22.137635 0.277778 0.02 -0.315515 26 10 707 266 60 60 0 0 GG 12.033674 40 0 1156 0 KEEP - Ces1g YES MNNG_4 chr8 96556399 96556399 G A exonic Nudt21 synonymous SNV NM_026623:c.C120T:p.Y40Y exonic Nudt21 synonymous SNV uc009mvo.1:c.C120T:p.Y40Y exonic ENSMUSG00000031754 synonymous SNV ENSMUST00000034204:c.C120T:p.Y40Y 8qC5 NA NA chr8 96556399 CGGxTAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 56 0 0 23.945246 0.5 0.02 -0.175316 10 10 262 252 60 60 0 0 GG 9.020862 30 0 804 0 KEEP - Nudt21 YES MNNG_4 chr8 96604852 96604852 G A intronic Bbs2 NA NA intronic Bbs2 NA NA intronic ENSMUSG00000031755 NA NA 8qC5 NA NA chr8 96604852 GAAxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 79 0 0 25.804593 0.34375 0.02 -0.280588 21 11 580 295 60 60 0 0 GG 11.421564 38 0 1064 0 KEEP - Bbs2 YES MNNG_4 chr8 96677884 96677884 G A exonic Mt3 nonsynonymous SNV NM_013603:c.G181A:p.A61T exonic Mt3 nonsynonymous SNV uc009mvu.2:c.G181A:p.A61T exonic ENSMUSG00000031760 nonsynonymous SNV ENSMUST00000034211:c.G181A:p.A61T 8qC5 NA NA chr8 96677884 GAGxCCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 60 0 0 15.201533 0.304348 0.02 -0.201658 16 7 440 180 60 60 0 0 GG 8.420743 28 0 770 0 KEEP + Mt3 YES MNNG_4 chr8 97029096 97029096 G A splicing Nlrc5(NM_001033207:exon27:c.3914+1G>A) NA NA splicing "Nlrc5(uc012gio.1:exon27:c.3914+1G>A,uc009mwj.2:exon24:c.3218+1G>A)" NA NA ncRNA_splicing ENSMUSG00000074151(ENSMUST00000053085:exon27:c.3914+1G>A) NA NA 8qC5 NA NA chr8 97029096 GAGxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 142 0 0 48.680841 0.428571 0.02 -0.429486 28 21 724 532 60 60 0 0 GG 22.547261 75 0 2035 0 KEEP + Nlrc5 YES MNNG_4 chr8 97039501 97039501 G A exonic Nlrc5 synonymous SNV NM_001033207:c.G4494A:p.R1498R exonic Nlrc5 synonymous SNV uc012gio.1:c.G4494A:p.R1498R ncRNA_exonic ENSMUSG00000074151 NA NA 8qC5 NA NA chr8 97039501 CAGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 91 0 0 25.611311 0.366667 0.02 -0.270828 19 11 505 289 60 60 0 0 GG 14.120129 47 0 1282 0 KEEP + Nlrc5 YES MNNG_4 chr8 97049277 97049277 T C intronic Nlrc5 NA NA intronic Nlrc5 NA NA ncRNA_exonic ENSMUSG00000074151 NA NA 8qC5 NA NA chr8 97049277 CGCxTGC T C OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 97 1 0 13.557442 0.148936 0.02 -0.420836 40 7 1071 188 60 60 0 0 TT 11.728834 39 0 1067 0 KEEP + Nlrc5 NO MNNG_4 chr8 97629701 97629701 G A exonic Kifc3 synonymous SNV NM_001145832:c.C1119T:p.L373L exonic Kifc3 synonymous SNV uc009mxu.1:c.C1185T:p.L395L exonic ENSMUSG00000031788 synonymous SNV ENSMUST00000169353:c.C1119T:p.L373L 8qD1 NA NA chr8 97629701 AATxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552849 0.552887 0.999931 59 0 0 19.584171 0.36 0.02 -0.21897 16 9 453 224 60 60 0 0 GG 7.520507 25 0 714 0 KEEP - Kifc3 YES MNNG_4 chr8 97852206 97852206 G A exonic Zfp319 nonsynonymous SNV NM_024467:c.C1268T:p.T423I exonic Zfp319 nonsynonymous SNV uc009myf.1:c.C1268T:p.T423I exonic ENSMUSG00000046556 nonsynonymous SNV ENSMUST00000057717:c.C1268T:p.T423I 8qD1 NA NA chr8 97852206 TCGxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 152 0 0 93.184846 0.527778 0.02 0.966219 34 38 903 967 60 60 0 0 GG 19.245996 64 0 1735 0 KEEP - Zfp319 YES MNNG_4 chr8 98235069 98235069 G A intronic Ndrg4 NA NA intronic Ndrg4 NA NA intronic ENSMUSG00000036564 NA NA 8qD1 NA NA chr8 98235069 CGGxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.351495 0.353947 0.993072 36 0 0 24.356335 0.526316 0.02 -0.166563 9 10 246 253 60 60 0 0 GG 3.307741 11 0 296 0 KEEP + Ndrg4 YES MNNG_4 chr8 9989986 9989986 G A UTR3 Abhd13 NA NA UTR3 Abhd13 NA NA UTR3 ENSMUSG00000040396 NA NA 8qA1.1 NA NA chr8 9989986 AAAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 65 0 0 40.453653 0.625 0.02 -0.210437 9 15 252 402 60 60 0 0 GG 11.421805 38 0 1066 0 KEEP + Abhd13 YES MNNG_4 chr9 102444878 102444878 C T exonic Ky nonsynonymous SNV NM_024291:c.C1753T:p.L585F exonic Ky nonsynonymous SNV uc009rfp.1:c.C1753T:p.L585F exonic ENSMUSG00000035606 nonsynonymous SNV ENSMUST00000039390:c.C1753T:p.L585F 9qF1 NA NA chr9 102444878 CCTxTCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979459 0.979526 0.999931 94 0 0 76.703749 0.535714 0.02 1.008999 26 30 725 792 60 60 0 0 CC 7.520597 25 0 713 0 KEEP + Ky YES MNNG_4 chr9 105601208 105601208 G A exonic Col6a6 synonymous SNV NM_001102607:c.C6282T:p.H2094H exonic Col6a6 synonymous SNV uc009ris.1:c.C6282T:p.H2094H exonic ENSMUSG00000043719 synonymous SNV ENSMUST00000098441:c.C6282T:p.H2094H 9qF1 NA NA chr9 105601208 CAGxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 77 2 0 36.317891 0.5 0.02 -0.262998 15 15 404 382 60 60 0 0 GG 11.12875 37 0 1024 0 KEEP - Col6a6 YES MNNG_4 chr9 106786771 106786771 C T exonic Rbm15b nonsynonymous SNV NM_175402:c.G2528A:p.G843D exonic Rbm15b nonsynonymous SNV uc012gzz.1:c.G2528A:p.G843D exonic ENSMUSG00000045365 nonsynonymous SNV ENSMUST00000055843:c.G2528A:p.G843D 9qF1 NA NA chr9 106786771 CTGxCCT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 120 0 0 67.886122 0.5 0.02 1.009063 28 28 763 714 60 60 0 0 CC 14.717708 49 0 1334 0 KEEP - Rbm15b YES MNNG_4 chr9 107493093 107493093 C T intronic Ifrd2 NA NA intronic Ifrd2 NA NA intronic ENSMUSG00000010048 NA NA 9qF1 NA NA chr9 107493093 GACxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 230 1 0 85.389766 0.375 0.02 0.738131 60 36 1623 958 60 60 0 0 CC 30.379284 101 0 2825 0 KEEP + Ifrd2 YES MNNG_4 chr9 107749657 107749657 G A exonic Rbm6 synonymous SNV NM_011251:c.C1425T:p.A475A exonic Rbm6 synonymous SNV uc009rnc.2:c.C1029T:p.A343A exonic ENSMUSG00000032582 synonymous SNV ENSMUST00000035201:c.C1029T:p.A343A 9qF1 NA NA chr9 107749657 AAAxGCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 85 0 0 57.648203 0.578947 0.02 -0.333116 16 22 434 584 60 60 0 0 GG 12.333072 41 0 1156 0 KEEP - Rbm6 YES MNNG_4 chr9 108013254 108013254 G A exonic Bsn synonymous SNV NM_007567:c.C7629T:p.A2543A exonic Bsn synonymous SNV uc009rov.1:c.C7629T:p.A2543A exonic ENSMUSG00000032589 synonymous SNV ENSMUST00000035208:c.C7629T:p.A2543A 9qF2 NA NA chr9 108013254 TGAxGCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 131 2 0 60.664196 0.403226 0.02 1.142856 37 25 1020 669 60 60 0 0 GG 17.445995 58 0 1620 0 KEEP - Bsn YES MNNG_4 chr9 108390909 108390909 C T exonic Lamb2 nonsynonymous SNV NM_008483:c.C4280T:p.A1427V exonic Lamb2 nonsynonymous SNV uc009rpr.2:c.C4280T:p.A1427V exonic ENSMUSG00000052911 nonsynonymous SNV ENSMUST00000065014:c.C4280T:p.A1427V 9qF2 NA NA chr9 108390909 GTGxCGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.999859 52 0 0 31.409787 0.464286 0.02 -0.245228 15 13 389 336 60 60 0 0 CC 5.405649 18 0 479 0 KEEP + Lamb2 YES MNNG_4 chr9 108871275 108871275 C T intronic Col7a1 NA NA intronic Col7a1 NA NA intronic ENSMUSG00000025650 NA NA 9qF2 NA NA chr9 108871275 GTGxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 147 0 0 77.85302 0.43038 0.02 0.994067 45 34 1207 851 60 60 0 0 CC 16.827992 56 0 1536 0 KEEP + Col7a1 YES MNNG_4 chr9 108880829 108880829 C T intronic Col7a1 NA NA intronic Col7a1 NA NA intronic ENSMUSG00000025650 NA NA 9qF2 NA NA chr9 108880829 CACxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 93 0 0 54.921524 0.538462 0.02 -0.341962 18 21 497 566 60 60 0 0 CC 12.917395 43 0 1173 0 KEEP + Col7a1 YES MNNG_4 chr9 108885908 108885908 G A exonic Col7a1 nonsynonymous SNV NM_007738:c.G8575A:p.E2859K exonic Col7a1 nonsynonymous SNV uc009rrh.1:c.G8575A:p.E2859K exonic ENSMUSG00000025650 nonsynonymous SNV ENSMUST00000026740:c.G8575A:p.E2859K 9qF2 NA NA chr9 108885908 CCTxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 142 1 0 80.860931 0.43038 0.02 0.895924 45 34 1255 881 60 60 0 0 GG 15.934228 53 0 1504 0 KEEP + Col7a1 YES MNNG_4 chr9 110212559 110212559 G A intronic Elp6 NA NA intronic "2610002I17Rik,Tmem103" NA NA intronic ENSMUSG00000054836 NA NA 9qF2 NA NA chr9 110212559 GGGxCTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 105 0 0 60.007805 0.48 0.02 -0.438399 26 24 718 636 60 60 0 0 GG 13.489631 45 0 1235 0 KEEP + Elp6 YES MNNG_4 chr9 110703492 110703492 C T intronic Prss42 NA NA intronic Prss42 NA NA intronic ENSMUSG00000044664 NA NA 9qF3 NA NA chr9 110703492 CTCxTTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 48 0 0 39.294976 0.555556 0.02 -0.236744 12 15 335 402 60 60 0 1 CC 5.114169 17 0 489 0 KEEP + Prss42 YES MNNG_4 chr9 110927644 110927644 G A exonic Ltf nonsynonymous SNV NM_008522:c.G1022A:p.S341N exonic Ltf nonsynonymous SNV uc009rvj.1:c.G1022A:p.S341N exonic ENSMUSG00000032496 nonsynonymous SNV ENSMUST00000035077:c.G1022A:p.S341N 9qF3 NA NA chr9 110927644 TCAxCTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 89 0 0 36.118749 0.441176 0.02 -0.298099 19 15 521 391 60 60 0 0 GG 12.633298 42 0 1175 0 KEEP + Ltf YES MNNG_4 chr9 110931997 110931997 C T intronic Ltf NA NA intronic Ltf NA NA intronic ENSMUSG00000032496 NA NA 9qF3 NA NA chr9 110931997 CACxCTA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.227502 0.229173 0.992708 27 0 0 28.020985 0.666667 0.02 -0.131525 5 10 135 274 60 60 0 0 CC 3.008038 10 0 281 0 KEEP + Ltf YES MNNG_4 chr9 110938214 110938214 C T intronic Ltf NA NA intronic Ltf NA NA intronic ENSMUSG00000032496 NA NA 9qF3 NA NA chr9 110938214 TGTxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 133 1 0 72.360335 0.538462 0.02 1.141404 24 28 668 746 60 60 0 0 CC 19.239361 64 0 1796 0 KEEP + Ltf YES MNNG_4 chr9 113854018 113854018 G A exonic Ubp1 nonsynonymous SNV NM_001083319:c.G166A:p.E56K exonic Ubp1 nonsynonymous SNV uc009rwx.1:c.G166A:p.E56K exonic ENSMUSG00000009741 nonsynonymous SNV ENSMUST00000116492:c.G166A:p.E56K 9qF3 NA NA chr9 113854018 TTGxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934491 0.934492 0.999999 90 0 0 79.88668 0.652174 0.02 -0.403281 16 30 437 785 60 60 0 0 GG 8.248216 34 1 938 18 KEEP + Ubp1 YES MNNG_4 chr9 114422606 114422606 G T exonic Trim71 synonymous SNV NM_001042503:c.C1725A:p.G575G exonic Trim71 synonymous SNV uc009rxp.1:c.C1725A:p.G575G exonic ENSMUSG00000079259 synonymous SNV ENSMUST00000111816:c.C1725A:p.G575G 9qF3 NA NA chr9 114422606 GATxCCC G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 232 0 0 11.766584 0.082474 0.02 0.641143 89 8 2445 198 60 60 0 0 GG 33.082349 110 0 3084 0 KEEP - Trim71 NO MNNG_4 chr9 115116716 115116716 G A exonic Osbpl10 nonsynonymous SNV NM_148958:c.G661A:p.E221K exonic Osbpl10 nonsynonymous SNV uc009ryn.1:c.G574A:p.E192K exonic ENSMUSG00000040875 nonsynonymous SNV ENSMUST00000046627:c.G661A:p.E221K 9qF3 NA NA chr9 115116716 ATGxAGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 76 0 0 28.130936 0.363636 0.02 -0.289297 21 12 566 318 60 60 0 0 GG 9.923157 33 0 917 0 KEEP + Osbpl10 YES MNNG_4 chr9 116019002 116019002 C T exonic Tgfbr2 nonsynonymous SNV NM_029575:c.G874A:p.D292N exonic Tgfbr2 nonsynonymous SNV uc009ryt.2:c.G874A:p.D292N exonic ENSMUSG00000032440 nonsynonymous SNV ENSMUST00000035014:c.G874A:p.D292N 9qF3 NA NA chr9 116019002 TGTxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 274 0 0 189.323659 0.513699 0.02 1.817299 71 75 1949 1975 60 60 0 0 CC 35.43994 118 0 3274 0 KEEP - Tgfbr2 YES MNNG_4 chr9 118537254 118537254 C T intronic Itga9 NA NA intronic Itga9 NA NA intronic ENSMUSG00000039115 NA NA 9qF3 NA NA chr9 118537254 CTCxAGG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 71 0 0 7.299248 0.133333 0.02 -0.262944 26 4 711 105 60 60 0 0 CC 8.422687 28 0 792 0 KEEP + Itga9 YES MNNG_4 chr9 118967447 118967447 G A exonic Vill nonsynonymous SNV NM_001164567:c.G160A:p.A54T exonic Vill nonsynonymous SNV uc009sab.2:c.G160A:p.A54T exonic ENSMUSG00000038775 nonsynonymous SNV ENSMUST00000051386:c.G160A:p.A54T 9qF3 NA NA chr9 118967447 AAAxCTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 128 0 0 86.780275 0.578947 0.02 1.097569 24 33 667 879 60 60 0 0 GG 15.942281 53 0 1491 0 KEEP + Vill YES MNNG_4 chr9 120341634 120341634 C T exonic Myrip synonymous SNV NM_144557:c.C1194T:p.D398D exonic Myrip synonymous SNV uc009scn.1:c.C1194T:p.D398D exonic ENSMUSG00000041794 synonymous SNV ENSMUST00000048121:c.C1194T:p.D398D 9qF4 NA NA chr9 120341634 CGAxAGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 97 0 0 53.672833 0.469388 0.02 -0.429002 26 23 691 574 60 60 0 0 CC 11.429279 38 0 1055 0 KEEP + Myrip YES MNNG_4 chr9 120482787 120482787 G A exonic Rpl14 nonsynonymous SNV NM_025974:c.G295A:p.E99K exonic Rpl14 nonsynonymous SNV uc009scr.1:c.G295A:p.E99K exonic ENSMUSG00000025794 nonsynonymous SNV ENSMUST00000050737:c.G295A:p.E99K 9qF4 NA NA chr9 120482787 AGAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 94 0 0 29.647345 0.325 0.02 -0.358955 27 13 753 344 60 60 0 0 GG 12.334466 41 0 1183 0 KEEP + Rpl14 YES MNNG_4 chr9 121597479 121597479 C T intronic Sec22c NA NA intronic Sec22c NA NA intronic ENSMUSG00000061536 NA NA 9qF4 NA NA chr9 121597479 TTTxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 108 0 0 55.788233 0.468085 0.02 -0.411999 25 22 682 594 60 60 0 0 CC 13.235934 44 0 1262 0 KEEP - Sec22c YES MNNG_4 chr9 122955716 122955716 G A exonic Tgm4 nonsynonymous SNV NM_177911:c.G515A:p.G172D exonic Tgm4 nonsynonymous SNV uc009sfo.1:c.G515A:p.G172D exonic ENSMUSG00000025787 nonsynonymous SNV ENSMUST00000026893:c.G515A:p.G172D 9qF4 NA NA chr9 122955716 TTGxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353943 0.353947 0.999988 53 0 0 19.95404 0.473684 0.02 -0.166248 10 9 270 214 60 60 0 0 GG 8.085942 27 0 716 0 KEEP + Tgm4 YES MNNG_4 chr9 123737787 123737787 T G exonic Fyco1 nonsynonymous SNV NM_001110253:c.A2444C:p.Q815P exonic Fyco1 nonsynonymous SNV uc009sgu.2:c.A2444C:p.Q815P exonic ENSMUSG00000025241 nonsynonymous SNV ENSMUST00000167595:c.A2444C:p.Q815P 9qF4 NA NA chr9 123737787 TCCxGTA T G OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 128 0 0 79.69211 0.507246 0.02 0.992645 34 35 923 838 60 60 0 0 TT 15.025125 50 0 1357 0 KEEP - Fyco1 NO MNNG_4 chr9 123737788 123737788 G T exonic Fyco1 nonsynonymous SNV NM_001110253:c.C2443A:p.Q815K exonic Fyco1 nonsynonymous SNV uc009sgu.2:c.C2443A:p.Q815K exonic ENSMUSG00000025241 nonsynonymous SNV ENSMUST00000167595:c.C2443A:p.Q815K 9qF4 NA NA chr9 123737788 CCTxTAG G T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 127 0 0 87.114857 0.507246 0.02 0.992404 34 35 929 912 60 60 0 0 GG 14.736887 49 0 1360 0 KEEP - Fyco1 NO MNNG_4 chr9 123738236 123738236 G A exonic Fyco1 synonymous SNV NM_001110253:c.C1995T:p.A665A exonic Fyco1 synonymous SNV uc009sgu.2:c.C1995T:p.A665A exonic ENSMUSG00000025241 synonymous SNV ENSMUST00000167595:c.C1995T:p.A665A 9qF4 NA NA chr9 123738236 CAGxGCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 118 0 0 69.417946 0.5 0.02 1.123869 27 27 739 728 60 60 0 0 GG 13.756164 46 0 1244 0 KEEP - Fyco1 YES MNNG_4 chr9 124039104 124039104 G A exonic Ccr5 nonsynonymous SNV NM_009917:c.G4A:p.D2N exonic Ccr5 nonsynonymous SNV uc009shd.2:c.G4A:p.D2N exonic ENSMUSG00000079227 nonsynonymous SNV ENSMUST00000111442:c.G4A:p.D2N 9qF4 NA NA chr9 124039104 ATGxATT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 130 0 0 78.531614 0.516667 0.02 0.965209 29 31 789 818 60 60 0 0 GG 15.942538 53 0 1492 0 KEEP + Ccr5 YES MNNG_4 chr9 14587148 14587148 C T exonic Ankrd49 nonsynonymous SNV NM_019683:c.G166A:p.E56K exonic Ankrd49 nonsynonymous SNV uc009ofa.1:c.G166A:p.E56K exonic ENSMUSG00000031931 nonsynonymous SNV ENSMUST00000034406:c.G166A:p.E56K 9qA2 NA NA chr9 14587148 TTTxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 164 0 0 76.546389 0.508475 0.02 1.080059 29 30 795 800 60 60 0 0 CC 24.065727 80 0 2279 0 KEEP - Ankrd49 YES MNNG_4 chr9 15727414 15727414 C T exonic Fat3 nonsynonymous SNV NM_001080814:c.G12325A:p.V4109I exonic Fat3 nonsynonymous SNV uc009ogj.1:c.G12325A:p.V4109I exonic ENSMUSG00000074505 nonsynonymous SNV ENSMUST00000082170:c.G12325A:p.V4109I 9qA2 NA NA chr9 15727414 TGAxACA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 93 0 0 30.663875 0.411765 0.02 -0.333055 20 14 554 340 60 60 0 0 CC 12.330425 41 0 1141 0 KEEP - Fat3 YES MNNG_4 chr9 19725674 19725674 C T UTR3 Olfr77 NA NA UTR3 Olfr77 NA NA UTR3 ENSMUSG00000051118 NA NA 9qA3 NA NA chr9 19725674 TTTxTAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 96 0 0 50.698995 0.512821 0.02 -0.341955 19 20 529 529 60 60 0 0 CC 14.129325 47 0 1337 0 KEEP + Olfr77 YES MNNG_4 chr9 20696163 20696163 C T exonic Ppan synonymous SNV NM_145610:c.C1170T:p.R390R exonic Ppan synonymous SNV uc009ojl.2:c.C543T:p.R181R exonic ENSMUSG00000004100 synonymous SNV ENSMUST00000004203:c.C1170T:p.R390R 9qA3 NA NA chr9 20696163 CCGxCAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78105 0.78106 0.999988 65 0 0 54.588769 0.617647 0.02 -0.298017 13 21 340 544 70 70 0 0 CC 8.110724 27 0 720 0 KEEP + Ppan YES MNNG_4 chr9 20696357 20696357 G A exonic Ppan nonsynonymous SNV NM_145610:c.G1280A:p.G427D exonic Ppan nonsynonymous SNV uc009ojl.2:c.G653A:p.G218D exonic ENSMUSG00000004100 nonsynonymous SNV ENSMUST00000004203:c.G1280A:p.G427D 9qA3 NA NA chr9 20696357 CTGxTAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999998 89 0 0 31.430347 0.35 0.02 -0.350681 26 14 699 360 60 60 0 0 GG 10.222881 34 0 915 0 KEEP + Ppan YES MNNG_4 chr9 20772825 20772825 C T exonic S1pr2 synonymous SNV NM_010333:c.G150A:p.E50E exonic S1pr2 synonymous SNV uc009ojt.2:c.G150A:p.E50E exonic ENSMUSG00000043895 synonymous SNV ENSMUST00000054197:c.G150A:p.E50E 9qA3 NA NA chr9 20772825 ATTxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 72 2 0 25.390342 0.354839 0.02 -0.271809 20 11 553 289 60 60 0 0 CC 8.423533 28 0 808 0 KEEP - S1pr2 YES MNNG_4 chr9 20837979 20837979 G A exonic Icam5 stopgain SNV NM_008319:c.G393A:p.W131X exonic Icam5 stopgain SNV uc009oka.2:c.G393A:p.W131X exonic ENSMUSG00000032174 stopgain SNV ENSMUST00000019616:c.G393A:p.W131X 9qA3 NA NA chr9 20837979 TTGxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999998 66 0 0 39.822998 0.533333 0.02 -0.26301 14 16 382 412 60 60 0 0 GG 9.924852 33 0 908 0 KEEP + Icam5 YES MNNG_4 chr9 20877496 20877496 C T ncRNA_intronic Raver1-fdx1l NA NA intronic Fdx1l NA NA intronic ENSMUSG00000079677 NA NA 9qA3 NA NA chr9 20877496 GATxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 280 0 0 127.702552 0.452174 0.02 1.984287 63 52 1743 1373 60 60 0 0 CC 37.891775 126 0 3587 0 KEEP - Raver1-fdx1l YES MNNG_4 chr9 21073140 21073140 C T intronic Atg4d NA NA intronic Atg4d NA NA intronic ENSMUSG00000002820 NA NA 9qA3 NA NA chr9 21073140 CTAxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 99 0 0 57.63421 0.479167 0.02 -0.420864 25 23 688 611 60 60 0 0 CC 11.708797 39 0 1053 0 KEEP + Atg4d YES MNNG_4 chr9 21624823 21624823 C T exonic Dock6 nonsynonymous SNV NM_177030:c.G3626A:p.S1209N exonic Dock6 nonsynonymous SNV uc009omn.1:c.G1283A:p.S428N exonic ENSMUSG00000032198 nonsynonymous SNV ENSMUST00000086329:c.G3533A:p.S1178N 9qA3 NA NA chr9 21624823 TGGxTGC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 117 0 0 65.553689 0.553191 0.02 -0.412012 21 26 574 672 60 60 0 0 CC 18.042028 60 0 1662 0 KEEP - Dock6 YES MNNG_4 chr9 21817526 21817526 C T exonic Prkcsh nonsynonymous SNV NM_008925:c.C1486T:p.L496F exonic Prkcsh nonsynonymous SNV uc009oni.1:c.C1486T:p.L496F exonic ENSMUSG00000003402 nonsynonymous SNV ENSMUST00000003493:c.C1486T:p.L496F 9qA3 NA NA chr9 21817526 TACxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 80 0 0 32.530691 0.35 0.02 -0.350728 26 14 721 371 60 60 0 0 CC 9.024778 30 0 860 0 KEEP + Prkcsh YES MNNG_4 chr9 24059128 24059128 G A exonic Npsr1 nonsynonymous SNV NM_175678:c.G365A:p.R122K exonic Npsr1 nonsynonymous SNV uc009oox.1:c.G365A:p.R122K exonic ENSMUSG00000043659 nonsynonymous SNV ENSMUST00000059650:c.G365A:p.R122K 9qA3 NA NA chr9 24059128 GCAxAGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 77 0 0 27.929212 0.363636 0.02 -0.289348 21 12 581 316 60 60 0 0 GG 8.723987 29 0 830 0 KEEP + Npsr1 YES MNNG_4 chr9 31169968 31169968 G A exonic Prdm10 nonsynonymous SNV NM_001080817:c.G2948A:p.S983N exonic Prdm10 nonsynonymous SNV uc009orp.1:c.G2948A:p.S983N exonic ENSMUSG00000042496 nonsynonymous SNV ENSMUST00000074510:c.G2948A:p.S983N 9qA4 NA NA chr9 31169968 TCAxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 167 2 0 84.42126 0.468354 0.02 0.99531 42 37 1136 905 60 60 0 0 GG 20.14886 67 0 1860 0 KEEP + Prdm10 YES MNNG_4 chr9 32068487 32068487 G A exonic Arhgap32 synonymous SNV NM_177379:c.G4977A:p.Q1659Q exonic Arhgap32 synonymous SNV uc012gpz.1:c.G4977A:p.Q1659Q exonic ENSMUSG00000041444 synonymous SNV ENSMUST00000168954:c.G4977A:p.Q1659Q 9qA4 NA NA chr9 32068487 CCAxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.999768 0.999768 1 179 2 0 80.629474 0.406977 0.02 0.826191 51 35 1370 892 60 60 0 0 GG 21.657574 72 0 2024 0 KEEP + Arhgap32 YES MNNG_4 chr9 32231517 32231517 G A exonic Fli1 synonymous SNV NM_008026:c.C1203T:p.V401V exonic Fli1 synonymous SNV uc009orz.1:c.C1203T:p.V401V exonic ENSMUSG00000016087 synonymous SNV ENSMUST00000016231:c.C1203T:p.V401V 9qA4 NA NA chr9 32231517 CGGxACA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979514 0.979526 0.999988 92 0 0 58.135571 0.428571 0.02 1.009035 32 24 869 633 60 60 0 0 GG 8.074936 27 0 733 0 KEEP - Fli1 YES MNNG_4 chr9 32560465 32560465 G A exonic Ets1 nonsynonymous SNV NM_001038642:c.G812A:p.G271E exonic Ets1 nonsynonymous SNV uc009osc.1:c.G812A:p.G271E exonic ENSMUSG00000032035 nonsynonymous SNV ENSMUST00000050797:c.G812A:p.G271E 9qA4 NA NA chr9 32560465 CAGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.99986 44 0 0 21.928169 0.409091 0.02 -0.192904 13 9 360 241 60 60 0 0 GG 5.715631 19 0 541 0 KEEP + Ets1 YES MNNG_4 chr9 36522036 36522036 G A exonic Chek1 synonymous SNV NM_007691:c.C897T:p.D299D exonic Chek1 synonymous SNV uc009otv.1:c.C897T:p.D299D exonic ENSMUSG00000032113 synonymous SNV ENSMUST00000172702:c.C897T:p.D299D 9qA4 NA NA chr9 36522036 AAAxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760834 0.760887 0.999931 72 0 0 30.911618 0.40625 0.02 -0.289344 19 13 526 341 60 60 0 0 GG 7.51997 25 0 706 0 KEEP - Chek1 YES MNNG_4 chr9 37060633 37060633 G A intronic Slc37a2 NA NA intronic Slc37a2 NA NA ncRNA_exonic ENSMUSG00000090136 NA NA 9qA4 NA NA chr9 37060633 GATxCAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 199 0 77 34.914634 0.390244 0.02 -0.359408 25 16 694 392 60 60 0 0 GG 33.090059 110 0 3147 0 KEEP - Slc37a2 YES MNNG_4 chr9 37110449 37110449 G A intronic Ccdc15 NA NA intronic Ccdc15 NA NA intronic ENSMUSG00000034303 NA NA 9qA4 NA NA chr9 37110449 TGAxAAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 101 0 0 80.40882 0.625 0.02 -0.420843 18 30 491 799 60 60 0 0 GG 13.537758 45 0 1298 0 KEEP - Ccdc15 YES MNNG_4 chr9 38137908 38137908 G A exonic Olfr25 synonymous SNV NM_146870:c.G735A:p.G245G exonic Olfr25 synonymous SNV uc009owe.2:c.G735A:p.G245G exonic ENSMUSG00000058270 synonymous SNV ENSMUST00000071449:c.G735A:p.G245G 9qA5.1 NA NA chr9 38137908 TGGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 167 0 0 102.404285 0.571429 0.02 0.886341 30 40 799 1041 60 60 0 0 GG 21.952393 73 0 2004 0 KEEP + Olfr25 YES MNNG_4 chr9 38157122 38157122 G A exonic Olfr898 synonymous SNV NM_146871:c.G453A:p.V151V exonic Olfr898 synonymous SNV uc009owf.1:c.G453A:p.V151V exonic ENSMUSG00000060101 synonymous SNV ENSMUST00000076504:c.G453A:p.V151V 9qA5.1 NA NA chr9 38157122 GGTxTTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 246 3 0 95.042293 0.47191 0.02 0.667666 47 42 1284 1018 60 60 0 0 GG 37.588111 125 0 3479 0 KEEP + Olfr898 YES MNNG_4 chr9 3894619 3894619 C T exonic Gucy1a2 nonsynonymous SNV NM_001033322:c.C2101T:p.P701S exonic Gucy1a2 nonsynonymous SNV uc009obd.1:c.C2101T:p.P701S exonic ENSMUSG00000041624 nonsynonymous SNV ENSMUST00000078143:c.C910T:p.P304S 9qA1 NA NA chr9 3894619 GACxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 100 2 0 54.396552 0.44 0.02 -0.438388 28 22 763 588 60 60 0 0 CC 12.032126 40 0 1124 0 KEEP + Gucy1a2 YES MNNG_4 chr9 39234420 39234420 G A exonic Olfr952 nonsynonymous SNV NM_146503:c.C235T:p.P79S exonic Olfr952 nonsynonymous SNV uc009oxx.1:c.C235T:p.P79S exonic ENSMUSG00000058856 nonsynonymous SNV ENSMUST00000073895:c.C235T:p.P79S 9qA5.1 "Score=0.927082;Name=No.105381,chr9:39273206" NA chr9 39234420 TAGxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 320 0 49 155.280921 0.530973 0.02 2.106546 53 60 1470 1606 46 60 0 0 GG 43.569797 145 0 4098 0 KEEP - Olfr952 YES MNNG_4 chr9 39899873 39899873 G A exonic Olfr983 nonsynonymous SNV NM_146827:c.C677T:p.S226F exonic Olfr983 nonsynonymous SNV uc009ozb.2:c.C677T:p.S226F exonic ENSMUSG00000044205 nonsynonymous SNV ENSMUST00000050996:c.C677T:p.S226F 9qA5.1 NA NA chr9 39899873 TTGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 103 0 0 55.704037 0.425926 0.02 1.027522 31 23 832 607 60 60 0 0 GG 12.026615 40 0 1116 0 KEEP - Olfr983 YES MNNG_4 chr9 40612335 40612335 G A exonic Hspa8 nonsynonymous SNV NM_031165:c.G1411A:p.V471I exonic Hspa8 nonsynonymous SNV uc009ozx.2:c.G1411A:p.V471I exonic ENSMUSG00000015656 nonsynonymous SNV ENSMUST00000015800:c.G1411A:p.V471I 9qA5.1 "Score=0.993624;Name=No.92108,chr5:5781528" NA chr9 40612335 GGGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 94 1 28 22.243386 0.357143 0.02 -0.254226 18 10 480 254 60 60 0 0 GG 12.029773 40 0 1092 0 KEEP + Hspa8 YES MNNG_4 chr9 42196286 42196286 G A exonic Tecta synonymous SNV NM_009347:c.C588T:p.G196G exonic Tecta synonymous SNV uc009pau.1:c.C588T:p.G196G exonic ENSMUSG00000037705 synonymous SNV ENSMUST00000042190:c.C588T:p.G196G 9qA5.1 NA NA chr9 42196286 GTCxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387365 0.387407 0.999892 52 0 0 10.308978 0.25 0.02 -0.17496 15 5 366 128 60 60 0 0 GG 6.912289 23 0 588 0 KEEP - Tecta YES MNNG_4 chr9 43884223 43884223 G A exonic Usp2 nonsynonymous SNV NM_016808:c.G734A:p.S245N exonic Usp2 nonsynonymous SNV uc009pbn.1:c.G734A:p.S245N exonic ENSMUSG00000032010 nonsynonymous SNV ENSMUST00000034508:c.G734A:p.S245N 9qA5.1 NA NA chr9 43884223 CAAxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 125 0 0 69.952337 0.5 0.02 0.982886 29 29 781 736 60 60 0 0 GG 15.940001 53 0 1451 0 KEEP + Usp2 YES MNNG_4 chr9 44143160 44143160 G A exonic H2afx nonsynonymous SNV NM_010436:c.G316A:p.G106S exonic H2afx nonsynonymous SNV uc009pcy.1:c.G316A:p.G106S exonic ENSMUSG00000049932 nonsynonymous SNV ENSMUST00000052686:c.G316A:p.G106S 9qA5.2 NA NA chr9 44143160 CAGxGCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 122 0 0 71.696102 0.509091 0.02 1.115118 27 28 738 749 60 60 0 0 GG 15.922608 53 0 1429 0 KEEP + H2afx YES MNNG_4 chr9 44225757 44225757 G A exonic Ccdc84 synonymous SNV NM_201372:c.C243T:p.N81N exonic Ccdc84 synonymous SNV uc009pdo.1:c.C243T:p.N81N exonic ENSMUSG00000043923 synonymous SNV ENSMUST00000053286:c.C243T:p.N81N 9qA5.2 NA NA chr9 44225757 CAGxTTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 183 0 0 101.440961 0.488372 0.02 0.746109 44 42 1168 1073 60 60 0 0 GG 22.554509 75 0 2033 0 KEEP - Ccdc84 YES MNNG_4 chr9 44317265 44317265 G A exonic Bcl9l nonsynonymous SNV NM_030256:c.G3884A:p.G1295E exonic Bcl9l nonsynonymous SNV uc009pdu.1:c.G3773A:p.G1258E exonic ENSMUSG00000063382 nonsynonymous SNV ENSMUST00000074989:c.G3884A:p.G1295E 9qA5.2 NA NA chr9 44317265 CTGxGGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 225 2 0 149.806008 0.568627 0.02 2.292176 44 58 1202 1525 60 60 0 0 GG 27.664392 92 0 2524 0 KEEP + Bcl9l YES MNNG_4 chr9 44627338 44627338 G A exonic Kmt2a nonsynonymous SNV NM_001081049:c.C9755T:p.P3252L exonic Mll1 nonsynonymous SNV uc009pep.1:c.C9755T:p.P3252L exonic ENSMUSG00000002028 nonsynonymous SNV ENSMUST00000002095:c.C9755T:p.P3252L 9qA5.2 NA NA chr9 44627338 GAGxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 117 0 0 58.035188 0.479167 0.02 -0.429622 25 23 681 615 60 60 0 0 GG 15.637339 52 0 1440 0 KEEP - Kmt2a YES MNNG_4 chr9 44896793 44896793 G A exonic Amica1 nonsynonymous SNV NM_001005421:c.G305A:p.G102D exonic Amica1 nonsynonymous SNV uc009pfe.2:c.G305A:p.G102D exonic ENSMUSG00000048534 nonsynonymous SNV ENSMUST00000050020:c.G305A:p.G102D 9qA5.2 NA NA chr9 44896793 ATGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999997 69 0 0 33.772003 0.466667 0.02 -0.263006 16 14 430 361 60 60 0 0 GG 9.589157 32 0 848 0 KEEP + Amica1 YES MNNG_4 chr9 44991442 44991442 G A intronic Tmprss4 NA NA ncRNA_intronic BC039997 NA NA intronic "ENSMUSG00000032091,ENSMUSG00000091996" NA NA 9qA5.2 NA NA chr9 44991442 CAAxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 DBSNP COVERED 0.948666 0.954491 0.993897 76 0 0 21.781305 0.285714 0.02 -0.42945 25 10 669 261 60 60 0 0 GG 7.80356 26 0 709 0 KEEP - Tmprss4 YES MNNG_4 chr9 45675061 45675061 G A intronic Rnf214 NA NA exonic Rnf214 nonsynonymous SNV uc009pgm.1:c.C1454T:p.A485V exonic ENSMUSG00000042790 nonsynonymous SNV ENSMUST00000057333:c.C1454T:p.A485V 9qA5.2 NA NA chr9 45675061 TGGxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 89 0 0 38.622035 0.470588 0.02 -0.29795 18 16 475 412 60 60 0 0 GG 12.63135 42 0 1158 0 KEEP - Rnf214 YES MNNG_4 chr9 45750323 45750323 G A exonic Sidt2 synonymous SNV NM_172257:c.C2061T:p.D687D exonic Sidt2 synonymous SNV uc009pgt.1:c.C2061T:p.D687D exonic ENSMUSG00000034908 synonymous SNV ENSMUST00000038488:c.C2061T:p.D687D 9qA5.2 NA NA chr9 45750323 GCGxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 122 0 0 77.113312 0.477612 0.02 0.90388 35 32 941 820 60 60 0 0 GG 12.631951 42 0 1151 0 KEEP - Sidt2 YES MNNG_4 chr9 48201090 48201090 G A exonic Nxpe4 synonymous SNV NM_172921:c.G393A:p.G131G exonic Fam55d synonymous SNV uc009phz.1:c.G393A:p.G131G exonic ENSMUSG00000044229 synonymous SNV ENSMUST00000165119:c.G393A:p.G131G 9qA5.3 NA NA chr9 48201090 GGGxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 104 6 2 71.812807 0.571429 0.02 1.009067 21 28 567 730 60 60 0 0 GG 11.42905 38 0 1046 0 KEEP + Nxpe4 YES MNNG_4 chr9 50444628 50444628 G A exonic Dlat nonsynonymous SNV NM_145614:c.C1831T:p.L611F exonic Dlat nonsynonymous SNV uc009pka.2:c.C1831T:p.L611F exonic ENSMUSG00000000168 nonsynonymous SNV ENSMUST00000034567:c.C1831T:p.L611F 9qA5.3 NA NA chr9 50444628 TGAxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999999 68 0 0 21.127677 0.409091 0.02 -0.210402 13 9 349 233 60 60 0 0 GG 10.527642 35 0 977 0 KEEP - Dlat YES MNNG_4 chr9 50884450 50884450 G A exonic Layn nonsynonymous SNV NM_001033534:c.C86T:p.A29V exonic Layn nonsynonymous SNV uc012gtc.1:c.C86T:p.A29V exonic ENSMUSG00000060594 nonsynonymous SNV ENSMUST00000073452:c.C86T:p.A29V 9qA5.3 NA NA chr9 50884450 GAGxCTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.99986 35 0 0 22.737815 0.8 0.02 -0.087672 2 8 56 211 60 60 0 0 GG 5.715377 19 0 538 0 KEEP - Layn YES MNNG_4 chr9 51633943 51633943 G A splicing Arhgap20(NM_175535:exon6:c.546-1G>A) NA NA splicing Arhgap20(uc009plj.1:exon6:c.546-1G>A) NA NA splicing "ENSMUSG00000053199(ENSMUST00000065496:exon6:c.546-1G>A,ENSMUST00000130405:exon6:c.438-1G>A)" NA NA 9qA5.3 NA NA chr9 51633943 TTAxATA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 119 0 0 48.139828 0.475 0.02 -0.350732 21 19 582 511 60 60 0 0 GG 18.940617 63 0 1798 0 KEEP + Arhgap20 YES MNNG_4 chr9 51924123 51924123 G A exonic Zc3h12c synonymous SNV NM_001162921:c.C2100T:p.F700F exonic Zc3h12c synonymous SNV uc009plv.2:c.C2100T:p.F700F exonic ENSMUSG00000035164 synonymous SNV ENSMUST00000038822:c.C2043T:p.F681F 9qA5.3 NA NA chr9 51924123 GTGxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 99 0 0 60.1566 0.461538 0.02 1.132624 28 24 779 643 60 60 0 0 GG 11.429433 38 0 1070 0 KEEP - Zc3h12c YES MNNG_4 chr9 53200196 53200196 G A exonic Kdelc2 synonymous SNV NM_212445:c.G849A:p.R283R exonic Kdelc2 synonymous SNV uc009pmb.1:c.G849A:p.R283R exonic ENSMUSG00000034487 synonymous SNV ENSMUST00000037853:c.G849A:p.R283R 9qA5.3 NA NA chr9 53200196 GAGxGGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.351961 0.353947 0.994391 36 0 0 29.427981 0.578947 0.02 -0.166594 8 11 219 298 60 60 0 0 GG 3.909703 13 0 358 0 KEEP + Kdelc2 YES MNNG_4 chr9 53307294 53307294 G A exonic Atm nonsynonymous SNV NM_007499:c.C3092T:p.T1031I exonic Atm nonsynonymous SNV uc012gtj.1:c.C3092T:p.T1031I exonic ENSMUSG00000034218 nonsynonymous SNV ENSMUST00000037440:c.C3092T:p.T1031I 9qA5.3 NA NA chr9 53307294 TTTxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 108 0 0 48.413895 0.526316 0.02 -0.34187 18 20 478 503 60 60 0 0 GG 17.144691 57 0 1588 0 KEEP - Atm YES MNNG_4 chr9 53875158 53875158 G A exonic Tnfaip8l3 synonymous SNV NM_001033535:c.C339T:p.N113N exonic Tnfaip8l3 synonymous SNV uc009pmt.2:c.C339T:p.N113N exonic ENSMUSG00000074345 synonymous SNV ENSMUST00000098760:c.C339T:p.N113N 9qA5.3 NA NA chr9 53875158 CTGxTTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 143 0 0 90.858592 0.5 0.02 0.851242 37 37 1010 955 60 60 0 0 GG 16.543354 55 0 1533 0 KEEP - Tnfaip8l3 YES MNNG_4 chr9 56054599 56054599 G A exonic C230081A13Rik nonsynonymous SNV NM_172924:c.C4864T:p.P1622S exonic C230081A13Rik nonsynonymous SNV uc009psz.2:c.C4864T:p.P1622S exonic ENSMUSG00000074305 nonsynonymous SNV ENSMUST00000061552:c.C4864T:p.P1622S 9qB NA NA chr9 56054599 ACGxGGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 111 0 0 47.387904 0.37037 0.02 1.221999 34 20 919 533 60 60 0 0 GG 13.828312 46 0 1255 0 KEEP - C230081A13Rik YES MNNG_4 chr9 56108223 56108223 G A exonic C230081A13Rik nonsynonymous SNV NM_172924:c.C227T:p.T76I exonic C230081A13Rik nonsynonymous SNV uc009psz.2:c.C227T:p.T76I exonic ENSMUSG00000074305 nonsynonymous SNV ENSMUST00000061552:c.C227T:p.T76I 9qB NA NA chr9 56108223 ATAxTGG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 186 1 0 56.619845 0.352113 0.02 0.720606 46 25 1256 647 60 60 0 0 GG 26.169778 87 0 2465 0 KEEP - C230081A13Rik YES MNNG_4 chr9 56988310 56988310 G A exonic Man2c1 nonsynonymous SNV NM_028636:c.G2365A:p.D789N exonic Man2c1 nonsynonymous SNV uc009puf.1:c.G331A:p.D111N exonic ENSMUSG00000032295 nonsynonymous SNV ENSMUST00000161182:c.G2068A:p.D690N 9qB NA NA chr9 56988310 CTAxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 136 0 0 74.219258 0.461538 0.02 1.027421 35 30 974 794 60 60 0 0 GG 16.544728 55 0 1572 0 KEEP + Man2c1 YES MNNG_4 chr9 57093665 57093665 G A exonic Trcg1 nonsynonymous SNV NM_001014398:c.G1783A:p.E595K exonic Trcg1 nonsynonymous SNV uc009pup.1:c.G103A:p.E35K exonic ENSMUSG00000070298 nonsynonymous SNV ENSMUST00000093836:c.G103A:p.E35K 9qB NA NA chr9 57093665 CTGxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 113 0 0 61.52747 0.462963 0.02 1.026543 29 25 801 658 60 60 0 0 GG 12.332995 41 0 1158 0 KEEP + Trcg1 YES MNNG_4 chr9 57966525 57966525 G A exonic Ccdc33 synonymous SNV NM_001166282:c.C27T:p.Y9Y exonic Ccdc33 synonymous SNV uc009pwd.1:c.C27T:p.Y9Y exonic ENSMUSG00000037716 synonymous SNV ENSMUST00000098681:c.C27T:p.Y9Y 9qB NA NA chr9 57966525 GAGxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 146 0 0 66.465029 0.439394 0.02 0.921471 37 29 978 723 60 60 0 0 GG 18.342943 61 0 1640 0 KEEP - Ccdc33 YES MNNG_4 chr9 58047218 58047218 G A exonic Islr2 nonsynonymous SNV NM_001161535:c.C697T:p.L233F exonic Islr2 nonsynonymous SNV uc009pwl.1:c.C697T:p.L233F exonic ENSMUSG00000051243 nonsynonymous SNV ENSMUST00000163200:c.C697T:p.L233F 9qB NA NA chr9 58047218 CGAxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 127 2 0 54.042611 0.436364 0.02 1.009486 31 24 863 590 60 60 0 0 GG 16.536166 55 0 1560 0 KEEP - Islr2 YES MNNG_4 chr9 58707703 58707703 G A exonic Hcn4 synonymous SNV NM_001081192:c.G2739A:p.K913K exonic Hcn4 synonymous SNV uc009pxi.1:c.G2739A:p.K913K exonic ENSMUSG00000032338 synonymous SNV ENSMUST00000034889:c.G2739A:p.K913K 9qB NA NA chr9 58707703 CAAxGCG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.48826 0.490544 0.995343 38 0 0 21.406319 0.391304 0.02 -0.201664 14 9 385 238 60 60 0 0 GG 4.210423 14 0 382 0 KEEP + Hcn4 YES MNNG_4 chr9 60688600 60688600 G A intronic Uaca NA NA intronic Uaca NA NA intronic ENSMUSG00000034485 NA NA 9qB NA NA chr9 60688600 AAGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 103 0 0 61.038122 0.5 0.02 -0.419886 24 24 642 640 60 60 0 0 GG 12.934342 43 0 1208 0 KEEP + Uaca YES MNNG_4 chr9 61219169 61219169 G A intergenic "B930092H01Rik(dist=77553),Tle3(dist=1004)" NA NA intergenic "AK167957(dist=226103),Tle3(dist=1004)" NA NA exonic ENSMUSG00000074256 synonymous SNV ENSMUST00000098658:c.C81T:p.G27G 9qB NA NA chr9 61219169 CAGxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 167 0 0 94.078175 0.47561 0.02 0.781912 43 39 1134 1001 60 60 0 0 GG 19.828026 66 0 1792 0 KEEP NA B930092H01Rik YES MNNG_4 chr9 62337156 62337156 G A exonic Coro2b synonymous SNV NM_175484:c.C108T:p.I36I exonic Coro2b synonymous SNV uc009qaj.1:c.C108T:p.I36I exonic ENSMUSG00000041729 synonymous SNV ENSMUST00000048043:c.C108T:p.I36I 9qB NA NA chr9 62337156 GGTxATG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 58 0 0 22.539054 0.37037 0.02 -0.23672 17 10 469 255 60 60 0 0 GG 8.121718 27 0 766 0 KEEP - Coro2b YES MNNG_4 chr9 64976384 64976384 G A exonic Igdcc4 stopgain SNV NM_020043:c.G1992A:p.W664X exonic Igdcc4 stopgain SNV uc009qct.1:c.G1992A:p.W664X exonic ENSMUSG00000032816 stopgain SNV ENSMUST00000035499:c.G1995A:p.W665X 9qC NA NA chr9 64976384 CTGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.818358 0.818465 0.999869 60 0 0 30.274562 0.361111 0.02 -0.315654 23 13 636 343 60 60 0 0 GG 6.317112 21 0 595 0 KEEP + Igdcc4 YES MNNG_4 chr9 65437322 65437322 G A exonic Pif1 synonymous SNV NM_172453:c.G909A:p.R303R exonic Pif1 synonymous SNV uc009qdq.1:c.G909A:p.R303R exonic ENSMUSG00000041064 synonymous SNV ENSMUST00000047099:c.G909A:p.R303R 9qC NA NA chr9 65437322 GCGxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 238 1 0 139.040122 0.487395 0.02 1.949025 61 58 1652 1472 60 60 0 0 GG 28.550606 95 0 2574 0 KEEP + Pif1 YES MNNG_4 chr9 65642849 65642849 G A exonic Zfp609 synonymous SNV NM_172536:c.C327T:p.F109F exonic Zfp609 synonymous SNV uc009qdx.1:c.C327T:p.F109F exonic ENSMUSG00000040524 synonymous SNV ENSMUST00000046309:c.C177T:p.F59F 9qC NA NA chr9 65642849 AGAxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 135 2 0 74.729751 0.418919 0.02 0.851191 43 31 1188 818 60 60 0 0 GG 14.41885 48 0 1320 0 KEEP - Zfp609 YES MNNG_4 chr9 65726921 65726921 G A exonic Trip4 synonymous SNV NM_001170907:c.C366T:p.D122D exonic Trip4 synonymous SNV uc009qdz.2:c.C366T:p.D122D exonic ENSMUSG00000032386 synonymous SNV ENSMUST00000117083:c.C366T:p.D122D 9qC NA NA chr9 65726921 TACxTCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 178 2 0 84.928425 0.492958 0.02 0.877938 36 35 864 896 60 60 0 0 GG 23.140693 77 0 1947 0 KEEP - Trip4 YES MNNG_4 chr9 66068343 66068343 G A exonic Dapk2 nonsynonymous SNV NM_010019:c.G95A:p.G32D exonic "DAPK2,Dapk2" nonsynonymous SNV uc009qem.2:c.G95A:p.G32D exonic ENSMUSG00000032380 nonsynonymous SNV ENSMUST00000034944:c.G95A:p.G32D 9qC NA NA chr9 66068343 GTGxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 108 2 0 58.300367 0.547619 0.02 -0.368222 19 23 521 599 60 60 0 0 GG 14.137701 47 0 1322 0 KEEP + Dapk2 YES MNNG_4 chr9 66079530 66079530 G A exonic Dapk2 nonsynonymous SNV NM_010019:c.G325A:p.G109R exonic Dapk2 nonsynonymous SNV uc009qen.2:c.G325A:p.G109R exonic ENSMUSG00000032380 nonsynonymous SNV ENSMUST00000034944:c.G325A:p.G109R 9qC NA NA chr9 66079530 GGAxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 79 0 0 43.887812 0.418605 0.02 -0.377032 25 18 690 480 60 60 0 0 GG 8.423082 28 0 799 0 KEEP + Dapk2 YES MNNG_4 chr9 69209620 69209620 G A exonic Rora synonymous SNV NM_013646:c.G357A:p.R119R exonic Rora synonymous SNV uc009qna.1:c.G189A:p.R63R exonic ENSMUSG00000032238 synonymous SNV ENSMUST00000113624:c.G189A:p.R63R 9qC NA NA chr9 69209620 TCGxACC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.421991 0.423478 0.99649 43 1 0 18.769214 0.4 0.02 -0.17534 12 8 328 208 60 60 0 0 GG 4.512295 15 0 427 0 KEEP + Rora YES MNNG_4 chr9 69845037 69845037 G A exonic Bnip2 nonsynonymous SNV NM_001008238:c.G268A:p.E90K exonic Bnip2 nonsynonymous SNV uc009qnn.1:c.G268A:p.E90K exonic ENSMUSG00000011958 nonsynonymous SNV ENSMUST00000165389:c.G268A:p.E90K 9qD NA NA chr9 69845037 TCAxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 142 0 0 54.295653 0.44 0.02 -0.438404 28 22 773 587 60 60 0 0 GG 19.85441 66 0 1889 0 KEEP + Bnip2 YES MNNG_4 chr9 72466519 72466519 G A exonic Rfx7 synonymous SNV NM_001033536:c.G3183A:p.K1061K exonic Rfx7 synonymous SNV uc009qqb.1:c.G3183A:p.K1061K exonic ENSMUSG00000037674 synonymous SNV ENSMUST00000093820:c.G3183A:p.K1061K 9qD NA NA chr9 72466519 CAAxCTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 114 0 0 83.638748 0.507463 0.02 1.00996 33 34 904 876 60 60 0 0 GG 11.704039 39 0 1072 0 KEEP + Rfx7 YES MNNG_4 chr9 72969036 72969036 G A exonic Rsl24d1 synonymous SNV NM_198609:c.G360A:p.K120K exonic Rsl24d1 synonymous SNV uc009qra.1:c.G360A:p.K120K exonic ENSMUSG00000032215 nonsynonymous SNV ENSMUST00000171196:c.G359A:p.R120K 9qD NA NA chr9 72969036 GAAxGTG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 79 2 0 41.302425 0.484848 0.02 -0.289354 17 16 464 436 60 60 0 0 GG 11.419243 38 0 1055 0 KEEP + Rsl24d1 YES MNNG_4 chr9 7358240 7358240 C T exonic Mmp12 synonymous SNV NM_008605:c.C1335T:p.I445I exonic Mmp12 synonymous SNV uc009ocm.1:c.C1176T:p.I392I exonic ENSMUSG00000049723 synonymous SNV ENSMUST00000005950:c.C1335T:p.I445I 9qA1 NA NA chr9 7358240 CATxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 88 1 0 20.793461 0.310345 0.02 -0.254291 20 9 556 243 60 60 0 0 CC 14.139243 47 0 1351 0 KEEP + Mmp12 YES MNNG_4 chr9 73779866 73779866 G A exonic Unc13c synonymous SNV NM_001081153:c.C1509T:p.P503P exonic Unc13c synonymous SNV uc009qrb.1:c.C1509T:p.P503P exonic ENSMUSG00000062151 synonymous SNV ENSMUST00000075245:c.C1509T:p.P503P 9qD NA NA chr9 73779866 GGAxGGC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 125 0 0 101.250006 0.565217 0.02 0.992598 30 39 828 1032 60 60 0 0 GG 11.731896 39 0 1108 0 KEEP - Unc13c YES MNNG_4 chr9 75097572 75097572 G A exonic Myo5c nonsynonymous SNV NM_001081322:c.G482A:p.G161E exonic Myo5c nonsynonymous SNV uc009qru.1:c.G482A:p.G161E exonic ENSMUSG00000033590 nonsynonymous SNV ENSMUST00000036555:c.G482A:p.G161E 9qD NA NA chr9 75097572 GTGxAGA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.99986 41 0 0 30.326836 0.6875 0.02 -0.14903 5 11 137 294 60 60 0 0 GG 5.708276 19 0 526 0 KEEP + Myo5c YES MNNG_4 chr9 78326708 78326708 G A intronic Eef1a1 NA NA intronic Eef1a1 NA NA intronic ENSMUSG00000037742 NA NA 9qE1 "Score=0.982259;Name=No.80052,chr2:40411235" NA chr9 78326708 CAAxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 70 0 0 33.450552 0.4375 0.02 -0.280538 18 14 488 363 60 60 0 0 GG 9.911288 33 0 918 0 KEEP - Eef1a1 YES MNNG_4 chr9 85622135 85622135 G A exonic Ibtk synonymous SNV NM_001081282:c.C1002T:p.A334A exonic Ibtk synonymous SNV uc009qwx.2:c.C1002T:p.A334A exonic ENSMUSG00000035941 synonymous SNV ENSMUST00000093806:c.C699T:p.A233A 9qE3.1 NA NA chr9 85622135 AAGxGCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999997 90 0 0 66.679093 0.5 0.02 1.125995 26 26 686 699 60 60 0 0 GG 9.624538 32 0 885 0 KEEP - Ibtk YES MNNG_4 chr9 85738085 85738085 G A exonic Tpbg nonsynonymous SNV NM_001164792:c.G499A:p.A167T exonic Tpbg nonsynonymous SNV uc009qwz.2:c.G499A:p.A167T exonic ENSMUSG00000035274 nonsynonymous SNV ENSMUST00000006559:c.G499A:p.A167T 9qE3.1 NA NA chr9 85738085 AACxCCA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 257 0 0 148.216562 0.512605 0.02 1.940534 58 61 1349 1549 60 60 0 0 GG 29.38579 98 0 2450 0 KEEP + Tpbg YES MNNG_4 chr9 8652903 8652903 C T intronic Trpc6 NA NA ncRNA_intronic AK054106 NA NA intronic ENSMUSG00000031997 NA NA 9qA1 NA NA chr9 8652903 TTAxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 67 2 0 32.255435 0.565217 0.02 -0.201616 10 13 266 329 60 60 0 0 CC 11.127673 37 0 1005 0 KEEP + Trpc6 YES MNNG_4 chr9 8903671 8903671 G A exonic Pgr synonymous SNV NM_008829:c.G1692A:p.G564G exonic Pgr synonymous SNV uc009odn.1:c.G1692A:p.G564G exonic ENSMUSG00000031870 synonymous SNV ENSMUST00000070463:c.G1692A:p.G564G 9qA1 NA NA chr9 8903671 CGGxGAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 91 2 0 63.474249 0.69697 0.02 -0.298062 10 23 266 613 60 60 0 0 GG 13.218546 44 0 1206 0 KEEP + Pgr YES MNNG_4 chr9 95845581 95845581 G A exonic Atr nonsynonymous SNV NM_019864:c.G7258A:p.V2420I exonic Atr nonsynonymous SNV uc009rbq.2:c.G2293A:p.V765I exonic ENSMUSG00000032409 nonsynonymous SNV ENSMUST00000034980:c.G7258A:p.V2420I 9qE3.3 NA NA chr9 95845581 AAAxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954479 0.954491 0.999988 81 0 0 53.549223 0.44898 0.02 -0.429621 27 22 743 577 60 60 0 0 GG 8.121717 27 0 764 0 KEEP + Atr YES MNNG_4 chr9 96586861 96586861 G A exonic Zbtb38 nonsynonymous SNV NM_175537:c.C2588T:p.P863L exonic Zbtb38 nonsynonymous SNV uc009rcp.1:c.C2588T:p.P863L exonic ENSMUSG00000040433 nonsynonymous SNV ENSMUST00000093798:c.C2588T:p.P863L 9qE3.3 NA NA chr9 96586861 TTAxGTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 185 0 0 136.879199 0.547368 0.02 0.862255 43 52 1182 1405 60 60 0 0 GG 22.259416 74 0 2091 0 KEEP - Zbtb38 YES MNNG_4 chr9 96588526 96588526 G A exonic Zbtb38 nonsynonymous SNV NM_175537:c.C923T:p.P308L exonic Zbtb38 nonsynonymous SNV uc009rcp.1:c.C923T:p.P308L exonic ENSMUSG00000040433 nonsynonymous SNV ENSMUST00000171500:c.C923T:p.P308L 9qE3.3 NA NA chr9 96588526 CTGxGAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979525 0.979526 0.999999 99 1 0 90.718245 0.618182 0.02 1.21302 21 34 580 904 60 60 0 0 GG 10.82862 36 0 1007 0 KEEP - Zbtb38 YES MNNG_4 chr9 96652504 96652504 G A ncRNA_intronic E030011O05Rik NA NA intronic Zbtb38 NA NA exonic ENSMUSG00000048790 synonymous SNV ENSMUST00000062899:c.C414T:p.C138C 9qE3.3 NA NA chr9 96652504 CAAxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948401 0.948402 0.999999 102 0 0 44.989465 0.404255 0.02 -0.420811 28 19 769 497 60 60 0 0 GG 10.823568 36 0 1008 0 KEEP - E030011O05Rik YES MNNG_4 chr9 96652694 96652694 G A ncRNA_intronic E030011O05Rik NA NA intronic Zbtb38 NA NA exonic ENSMUSG00000048790 nonsynonymous SNV ENSMUST00000062899:c.C224T:p.T75I 9qE3.3 NA NA chr9 96652694 GCTxTCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717214 0.717315 0.999859 51 0 0 30.082583 0.433333 0.02 -0.271748 17 13 454 328 60 60 0 0 GG 5.352337 18 0 484 0 KEEP - E030011O05Rik YES MNNG_4 chr9 97263351 97263351 C T exonic Trim42 nonsynonymous SNV NM_030219:c.G1814A:p.G605D exonic Trim42 nonsynonymous SNV uc009rdc.1:c.G1814A:p.G605D exonic ENSMUSG00000032451 nonsynonymous SNV ENSMUST00000035026:c.G1814A:p.G605D 9qE3.3 NA NA chr9 97263351 GGGxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 156 0 0 79.474715 0.561404 0.02 1.000323 25 32 677 812 60 60 0 0 CC 22.929517 83 1 2212 18 KEEP - Trim42 YES MNNG_4 chr9 98320459 98320459 G A intergenic "Nmnat3(dist=8612),Rbp1(dist=2921)" NA NA intronic Nmnat3 NA NA intronic ENSMUSG00000032456 NA NA 9qE3.3 NA NA chr9 98320459 GCAxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 85 0 0 35.106455 0.451613 0.02 -0.271835 17 14 484 377 60 60 0 0 GG 11.431844 38 0 1095 0 KEEP NA Nmnat3 YES MNNG_4 chr9 98472026 98472026 C T exonic Copb2 stopgain SNV NM_015827:c.C469T:p.Q157X exonic Copb2 stopgain SNV uc009rdm.1:c.C469T:p.Q157X exonic ENSMUSG00000032458 stopgain SNV ENSMUST00000035033:c.C469T:p.Q157X 9qE3.3 NA NA chr9 98472026 AATxAGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 169 5 0 86.121412 0.486111 0.02 0.957335 37 35 1023 911 60 60 0 0 CC 22.864097 76 0 2199 0 KEEP + Copb2 YES MNNG_4 chr9 98482855 98482855 G A intronic Copb2 NA NA intronic Copb2 NA NA intronic ENSMUSG00000032458 NA NA 9qE3.3 NA NA chr9 98482855 GCAxCCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 59 0 0 8.064021 0.210526 0.02 -0.175353 15 4 408 104 60 60 0 0 GG 8.42219 28 0 783 0 KEEP + Copb2 YES MNNG_4 chr9 99427294 99427294 C T intronic Armc8 NA NA intronic Armc8 NA NA intronic ENSMUSG00000032468 NA NA 9qE3.3 NA NA chr9 99427294 AGGxGGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.693577 0.693668 0.999869 58 0 0 32.472794 0.466667 0.02 -0.262867 16 14 397 348 60 60 0 0 CC 6.314448 21 0 561 0 KEEP - Armc8 YES MNNG_4 chrM 11480 11480 C T intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA UTR3 mt-Nd4 NA NA exonic ENSMUSG00000064363 unknown UNKNOWN NA NA NA chrM 11480 AGCxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1998 10 0 28.665311 0.02694 0.02 19.042605 903 25 24717 664 60 60 0 0 CC 297.747031 991 0 27128 0 KEEP NA NONE YES MNNG_4 chrM 4418 4418 G A intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic AK163440 NA NA exonic ENSMUSG00000064345 unknown UNKNOWN NA NA NA chrM 4418 GGAxGAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1642 4 0 23.609632 0.03125 0.02 12.952628 589 19 16201 511 60 60 0 0 GG 294.981402 985 1 27916 11 KEEP NA NONE YES MNNG_4 chrM 5685 5685 G A intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic DQ539915 NA NA exonic ENSMUSG00000064351 unknown UNKNOWN NA NA NA chrM 5685 GAAxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1998 7 99 68.738407 0.054622 0.02 19.450983 900 52 24903 1308 60 46 0 0 GG 299.768917 997 0 27752 0 KEEP NA NONE YES MNNG_4 chrX 101160589 101160589 C T splicing Rlim(NM_011276:exon5:c.250+1G>A) NA NA splicing "Rlim(uc009tzz.1:exon5:c.250+1G>A,uc009uaa.1:exon5:c.250+1G>A)" NA NA splicing "ENSMUSG00000056537(ENSMUST00000070705:exon5:c.250+1G>A,ENSMUST00000121153:exon5:c.250+1G>A)" NA NA XqD NA NA chrX 101160589 GTAxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 161 2 0 112.777431 0.788462 0.02 1.04418 11 41 291 1049 60 60 0 0 CC 23.109298 81 1 2225 11 KEEP - Rlim YES MNNG_4 chrX 101756060 101756060 C T exonic Zdhhc15 nonsynonymous SNV NM_175358:c.G931A:p.E311K exonic Zdhhc15 nonsynonymous SNV uc009uaj.2:c.G931A:p.E311K exonic ENSMUSG00000033906 nonsynonymous SNV ENSMUST00000042070:c.G931A:p.E311K XqD NA NA chrX 101756060 CCTxATT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 281 0 0 201.302179 0.707547 0.02 2.265419 31 75 874 1934 60 60 0 0 CC 37.890569 126 0 3607 0 KEEP - Zdhhc15 YES MNNG_4 chrX 105968670 105968670 G A exonic Brwd3 nonsynonymous SNV NM_001081477:c.C2302T:p.P768S exonic Brwd3 nonsynonymous SNV uc009ucm.1:c.C2302T:p.P768S exonic ENSMUSG00000063663 nonsynonymous SNV ENSMUST00000150434:c.C2302T:p.P768S XqD NA NA chrX 105968670 ATGxCTT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 114 0 0 13.101038 0.155556 0.02 -0.394561 38 7 1041 182 60 60 0 0 GG 14.438073 48 0 1341 0 KEEP - Brwd3 YES MNNG_4 chrX 106200815 106200815 G A exonic Hmgn5 nonsynonymous SNV NM_016710:c.C854T:p.P285L exonic Hmgn5 nonsynonymous SNV uc009ucs.1:c.C854T:p.P285L exonic ENSMUSG00000031245 nonsynonymous SNV ENSMUST00000033597:c.C854T:p.P285L XqD NA NA chrX 106200815 TCAxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 730 2 0 182.670467 0.269737 0.02 7.114431 222 82 6091 2205 60 60 0 0 GG 104.659377 348 0 9817 0 KEEP - Hmgn5 YES MNNG_4 chrX 12321885 12321885 C T exonic Med14 nonsynonymous SNV NM_001048208:c.G1261A:p.E421K exonic Med14 nonsynonymous SNV uc009sqz.1:c.G1261A:p.E421K exonic ENSMUSG00000064127 nonsynonymous SNV ENSMUST00000071680:c.G1261A:p.E421K XqA1.1 NA NA chrX 12321885 GTTxCTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 170 0 0 163.881398 0.719512 0.02 0.869617 23 59 643 1569 60 60 0 0 CC 14.465679 57 1 1606 25 KEEP - Med14 YES MNNG_4 chrX 12864629 12864629 G A exonic Ddx3x synonymous SNV NM_010028:c.G483A:p.E161E exonic Ddx3x synonymous SNV uc009srl.2:c.G483A:p.E161E exonic ENSMUSG00000000787 synonymous SNV ENSMUST00000000804:c.G483A:p.E161E XqA1.1 NA NA chrX 12864629 TGAxAAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 91 0 0 44.541259 0.486486 0.02 -0.324339 19 18 528 471 60 60 0 0 GG 12.033203 40 0 1147 0 KEEP + Ddx3x YES MNNG_4 chrX 133202033 133202033 C T intronic Tceal3 NA NA intronic Tceal3 NA NA intronic ENSMUSG00000044550 NA NA XqF1 "Score=0.957941;Name=No.114265,chrX:131743281" NA chrX 133202033 TTCxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 104 0 6 66.193864 0.555556 0.02 -0.394561 20 25 541 677 60 60 0 0 CC 14.692758 49 0 1342 0 KEEP + Tceal3 YES MNNG_4 chrX 143914811 143914811 C T exonic Lrch2 nonsynonymous SNV NM_001081173:c.G2191A:p.G731S exonic Lrch2 nonsynonymous SNV uc009uni.1:c.G628A:p.G210S exonic ENSMUSG00000031290 nonsynonymous SNV ENSMUST00000152838:c.G1228A:p.G410S XqF2 NA NA chrX 143914811 CACxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 72 0 0 40.443708 0.6 0.02 -0.219205 10 15 273 406 60 60 0 0 CC 10.527349 35 0 974 0 KEEP - Lrch2 YES MNNG_4 chrX 148477690 148477690 C T intronic Smc1a NA NA intronic Smc1a NA NA ncRNA_exonic ENSMUSG00000083474 NA NA XqF3 NA NA chrX 148477690 CAGxCCG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 239 2 13 201.049393 0.92 0.02 0.931368 6 69 162 1773 60 60 0 0 CC 43.572734 145 0 3961 0 KEEP + Smc1a YES MNNG_4 chrX 150268098 150268098 C T exonic Spin2c synonymous SNV NM_001005370:c.C363T:p.R121R exonic Spin2 synonymous SNV uc009urb.1:c.C363T:p.R121R exonic ENSMUSG00000046550 synonymous SNV ENSMUST00000049999:c.C363T:p.R121R XqF3 NA NA chrX 150268098 GCGxCTT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 70 0 0 53.293327 0.740741 0.02 -0.236513 7 20 192 505 60 60 0 0 CC 11.729231 39 0 1066 0 KEEP + Spin2c YES MNNG_4 chrX 151729993 151729993 C T exonic Acot9 nonsynonymous SNV NM_019736:c.C844T:p.P282S exonic Acot9 nonsynonymous SNV uc009urs.1:c.C844T:p.P282S exonic ENSMUSG00000025287 nonsynonymous SNV ENSMUST00000026324:c.C844T:p.P282S XqF3 NA NA chrX 151729993 TTGxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 93 0 0 103.475267 0.822222 0.02 -0.394477 8 37 219 950 60 60 0 0 CC 9.925696 33 0 914 0 KEEP + Acot9 YES MNNG_4 chrX 17996238 17996238 G A exonic 4930578C19Rik synonymous SNV NM_175228:c.C1102T:p.L368L exonic 4930578C19Rik synonymous SNV uc009ssp.1:c.C1102T:p.L368L exonic ENSMUSG00000037358 synonymous SNV ENSMUST00000044188:c.C1102T:p.L368L XqA1.3 NA NA chrX 17996238 GCAxCAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999998 95 0 0 34.840769 0.280702 0.02 0.991461 41 16 1130 419 60 60 0 0 GG 9.917837 33 0 927 0 KEEP - 4930578C19Rik YES MNNG_4 chrX 19058052 19058052 C T intergenic "Mir222(dist=333955),Chst7(dist=578644)" NA NA intergenic "AK170409(dist=313685),Chst7(dist=578644)" NA NA exonic ENSMUSG00000068149 nonsynonymous SNV ENSMUST00000089246:c.G283A:p.D95N XqA1.3 "Score=0.946843;Name=No.107706,chrX:35724169" NA chrX 19058052 GGTxGTG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973962 0.973965 0.999997 102 0 0 86.662607 0.611111 0.02 1.026671 21 33 541 866 60 60 0 0 CC 9.012532 30 0 777 0 KEEP NA Mir222 YES MNNG_4 chrX 24801068 24801068 C T intergenic "Gm5169(dist=72487),Gm1993(dist=174354)" NA NA intergenic "Gm5169(dist=72487),Gm1993(dist=174354)" NA NA ncRNA_intronic ENSMUSG00000086345 NA NA XqA2 "Score=0.982306;Name=No.109060,chrX:24964665" NA chrX 24801068 AAAxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 384 1 99 26.642 0.142857 0.02 0.72933 84 14 2283 374 60 29 0 1 CC 55.34284 184 0 5117 0 KEEP NA Gm5169 YES MNNG_4 chrX 30480301 30480301 G A intergenic "Gm14345(dist=187270),Gm2799(dist=118010)" NA NA intergenic "Gm14351(dist=187270),Gm2799(dist=118010)" NA NA intergenic "ENSMUSG00000079653(dist=104649),ENSMUSG00000078333(dist=118095)" NA NA XqA3.1 "Score=0.980237;Name=No.106626,chrX:3042147" NA chrX 30480301 AAAxTTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1444 19 60 38.592774 0.049587 0.02 11.338132 575 30 15237 759 55 30 0 0 GG 202.972664 675 0 18470 0 KEEP NA Gm14345 YES MNNG_4 chrX 33360607 33360607 G A intergenic "Gm10486(dist=393519),Dock11(dist=68220)" NA NA intergenic "Gm10147(dist=393519),Dock11(dist=68220)" NA NA ncRNA_exonic ENSMUSG00000082799 NA NA XqA3.2 "Score=0.901473;Name=No.107728,chrX:23376202" NA chrX 33360607 AAGxTAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.351495 0.353947 0.993072 36 0 3 27.524818 0.578947 0.02 -0.166557 8 11 214 279 36 60 0 0 GG 3.908621 13 0 347 0 KEEP NA Gm10486 YES MNNG_4 chrX 34208693 34208693 G A intergenic "Akap17b(dist=23284),Slc25a43(dist=74934)" NA NA intergenic "Akap17b(dist=23284),Slc25a43(dist=74961)" NA NA ncRNA_exonic ENSMUSG00000081281 NA NA XqA3.3 NA NA chrX 34208693 GGGxTAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 173 1 9 65.74406 0.45 0.02 0.974014 33 27 875 708 60 60 0 0 GG 27.631789 92 0 2495 0 KEEP NA Akap17b YES MNNG_4 chrX 34529341 34529341 G A intronic Sept6 NA NA intronic Sept6 NA NA intronic ENSMUSG00000050379 NA NA XqA3.3 NA NA chrX 34529341 CTAxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 95 2 0 68.135804 0.65 0.02 -0.350639 14 26 386 670 60 60 0 0 GG 11.430954 38 0 1080 0 KEEP - Sept6 YES MNNG_4 chrX 34589097 34589097 C T exonic Sowahd nonsynonymous SNV NM_173779:c.C179T:p.T60I exonic Ankrd58 nonsynonymous SNV uc009syb.1:c.C179T:p.T60I exonic ENSMUSG00000044400 nonsynonymous SNV ENSMUST00000060057:c.C179T:p.T60I XqA3.3 NA NA chrX 34589097 TGAxCGT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 105 1 0 41.511136 0.391304 0.02 -0.40329 28 18 762 463 60 60 0 0 CC 13.229143 44 0 1195 0 KEEP + Sowahd YES MNNG_4 chrX 34762190 34762190 C T exonic Rhox1 nonsynonymous SNV NM_001025084:c.G49A:p.A17T exonic Rhox1 nonsynonymous SNV uc009syl.1:c.G49A:p.A17T exonic ENSMUSG00000071773 nonsynonymous SNV ENSMUST00000115210:c.G49A:p.A17T XqA3.3 NA NA chrX 34762190 AGGxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 77 0 0 45.465877 0.513514 0.02 -0.323344 18 19 469 475 60 60 0 0 CC 9.232315 31 0 810 0 KEEP - Rhox1 YES MNNG_4 chrX 34932150 34932150 G A exonic Rhox4d nonsynonymous SNV NM_001039695:c.G497A:p.G166D exonic Rhox4d nonsynonymous SNV uc009syx.1:c.G497A:p.G166D exonic ENSMUSG00000079633 nonsynonymous SNV ENSMUST00000115175:c.G497A:p.G166D XqA3.3 "Score=0.97464;Name=No.112616,chrX:34782999" NA chrX 34932150 TAGxTGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 671 5 90 181.460738 0.436782 0.02 2.974543 98 76 2644 1970 60 60 0 0 GG 103.665033 345 0 9492 0 KEEP + Rhox4d YES MNNG_4 chrX 35659079 35659079 C T intergenic "Tmem255a(dist=53421),Atp1b4(dist=10365)" NA NA intergenic "Fam70a(dist=53421),Atp1b4(dist=10365)" NA NA ncRNA_intronic ENSMUSG00000084009 NA NA XqA3.3 "Score=0.959223;Name=No.112680,chrX:35237291" NA chrX 35659079 CCTxTCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 265 0 119 69.121199 0.509434 0.02 1.123861 26 27 725 722 36 36 0 0 CC 39.700855 132 0 3782 0 KEEP NA Tmem255a YES MNNG_4 chrX 39612560 39612560 G A exonic Stag2 nonsynonymous SNV NM_001077712:c.G2804A:p.G935D exonic Stag2 nonsynonymous SNV uc009tax.1:c.G2804A:p.G935D exonic ENSMUSG00000025862 nonsynonymous SNV ENSMUST00000069619:c.G2804A:p.G935D XqA4 NA NA chrX 39612560 ATGxCTA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.353922 0.353947 0.999931 46 0 0 8.273345 0.210526 0.02 -0.16586 15 4 389 106 60 60 0 0 GG 7.519977 25 0 701 0 KEEP + Stag2 YES MNNG_4 chrX 39889482 39889482 C T exonic Tenm1 nonsynonymous SNV NM_011855:c.G6637A:p.E2213K exonic Odz1 nonsynonymous SNV uc009tbc.1:c.G6637A:p.E2213K exonic ENSMUSG00000016150 nonsynonymous SNV ENSMUST00000115058:c.G6616A:p.E2206K XqA4 NA NA chrX 39889482 TTTxCCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 177 0 0 96.099058 0.464286 0.02 0.763506 45 39 1246 1027 60 60 0 0 CC 22.553318 75 0 2109 0 KEEP - Tenm1 YES MNNG_4 chrX 42143145 42143145 C T UTR5 Dcaf12l1 NA NA UTR5 Dcaf12l1 NA NA UTR5 ENSMUSG00000045284 NA NA XqA4 NA NA chrX 42143145 CAAxCGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 113 1 0 112.994975 0.671875 0.02 0.938957 21 43 570 1101 60 60 0 0 CC 12.631992 42 0 1153 0 KEEP - Dcaf12l1 YES MNNG_4 chrX 49409814 49409814 C T intronic Gpc4 NA NA intronic Gpc4 NA NA intronic ENSMUSG00000031119 NA NA XqA5 NA NA chrX 49409814 ACAxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 96 0 0 37.03633 0.432432 0.02 -0.324346 21 16 555 404 60 60 0 0 CC 13.834075 46 0 1248 0 KEEP - Gpc4 YES MNNG_4 chrX 54490242 54490242 G A exonic Arhgef6 nonsynonymous SNV NM_152801:c.C2113T:p.P705S exonic Arhgef6 nonsynonymous SNV uc009thc.2:c.C217T:p.P73S exonic ENSMUSG00000031133 nonsynonymous SNV ENSMUST00000114735:c.C1177T:p.P393S XqA5 NA NA chrX 54490242 GTGxAAC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 110 0 0 50.127692 0.375 0.02 1.097588 35 21 951 562 60 60 0 0 GG 12.032967 40 0 1141 0 KEEP - Arhgef6 YES MNNG_4 chrX 5660337 5660337 C T exonic AU022751 nonsynonymous SNV NM_001033211:c.G104A:p.G35D exonic AU022751 nonsynonymous SNV uc009skv.2:c.G104A:p.G35D exonic ENSMUSG00000073294 nonsynonymous SNV ENSMUST00000101698:c.G104A:p.G35D XqA1.1 NA NA chrX 5660337 GGAxCAC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717228 0.717315 0.999879 59 2 0 24.684432 0.366667 0.02 -0.26298 19 11 500 280 60 60 0 0 CC 6.615715 22 0 590 0 KEEP - AU022751 YES MNNG_4 chrX 63908698 63908698 G A exonic Slitrk2 nonsynonymous SNV NM_198863:c.G1619A:p.G540E exonic Slitrk2 nonsynonymous SNV uc009tir.2:c.G1619A:p.G540E exonic ENSMUSG00000036790 nonsynonymous SNV ENSMUST00000036043:c.G1619A:p.G540E XqA7.1 NA NA chrX 63908698 TGGxGCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 64 0 0 18.047419 0.307692 0.02 -0.23674 18 8 494 212 60 60 0 0 GG 9.624487 32 0 887 0 KEEP + Slitrk2 YES MNNG_4 chrX 69212490 69212490 G A exonic Prrg3 nonsynonymous SNV NM_001081135:c.G263A:p.G88E exonic Prrg3 nonsynonymous SNV uc009tkh.1:c.G263A:p.G88E exonic ENSMUSG00000033361 nonsynonymous SNV ENSMUST00000048790:c.G263A:p.G88E XqA7.3 NA NA chrX 69212490 TGGxGGT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 77 0 0 37.640725 0.483871 0.02 -0.271474 16 15 419 398 60 60 0 0 GG 11.730182 39 0 1079 0 KEEP + Prrg3 YES MNNG_4 chrX 70078651 70078651 G A exonic Gabrq synonymous SNV NM_020488:c.G411A:p.K137K exonic Gabrq synonymous SNV uc009tkq.1:c.G411A:p.K137K exonic ENSMUSG00000031344 synonymous SNV ENSMUST00000033711:c.G411A:p.K137K XqA7.3 NA NA chrX 70078651 GAAxCTC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 76 0 0 36.024276 0.483871 0.02 -0.271752 16 15 435 382 60 60 0 0 GG 12.032286 40 0 1132 0 KEEP + Gabrq YES MNNG_4 chrX 70280708 70280708 G A exonic Pnma5 nonsynonymous SNV NM_001100461:c.C1706T:p.A569V exonic Pnma5 nonsynonymous SNV uc012hjz.1:c.C1706T:p.A569V exonic ENSMUSG00000050424 nonsynonymous SNV ENSMUST00000051569:c.C1706T:p.A569V XqA7.3 "Score=0.9954;Name=No.113338,chrX:70311894" NA chrX 70280708 TCTxCCC G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162446 0.162467 0.999869 46 0 6 11.042995 0.416667 0.02 -0.113957 7 5 193 122 60 60 0 0 GG 6.89848 23 0 631 0 KEEP - Pnma5 YES MNNG_4 chrX 70332713 70332713 C T splicing Xlr3a(NM_001110784:exon9:c.514-1G>A) NA NA splicing Xlr3a(uc009tld.2:exon9:c.514-1G>A) NA NA splicing "ENSMUSG00000057836(ENSMUST00000114524:exon9:c.529-1G>A,ENSMUST00000074619:exon9:c.514-1G>A,ENSMUST00000172938:exon3:c.59-1G>A)" NA NA XqA7.3 "Score=0.974732;Name=No.113359,chrX:70431519" NA chrX 70332713 TTTxTGA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 224 1 103 65.211034 0.531915 0.02 -0.412123 22 25 620 674 60 60 0 0 CC 34.887929 116 0 3330 0 KEEP - Xlr3a YES MNNG_4 chrX 70931860 70931860 G A UTR3 Bcap31 NA NA UTR3 Bcap31 NA NA UTR3 ENSMUSG00000002015 NA NA XqA7.3 NA NA chrX 70931860 CAGxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 166 0 0 50.684842 0.298701 0.02 0.824931 54 23 1454 601 60 60 0 0 GG 19.848592 66 0 1817 0 KEEP - Bcap31 YES MNNG_4 chrX 71009675 71009675 C T intronic Plxnb3 NA NA intronic Plxnb3 NA NA intronic ENSMUSG00000031385 NA NA XqA7.3 NA NA chrX 71009675 ATCxTAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 131 0 0 109.151149 0.684211 0.02 1.195427 18 39 499 1060 60 60 0 0 CC 16.844269 56 0 1578 0 KEEP + Plxnb3 YES MNNG_4 chrX 71013990 71013990 G A intronic Plxnb3 NA NA intronic Plxnb3 NA NA intronic ENSMUSG00000031385 NA NA XqA7.3 NA NA chrX 71013990 GAGxACT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 104 0 0 54.551778 0.44898 0.02 -0.429609 27 22 737 587 60 60 0 0 GG 12.332634 41 0 1150 0 KEEP + Plxnb3 YES MNNG_4 chrX 71024487 71024487 G A exonic Idh3g synonymous SNV NM_008323:c.C1104T:p.G368G exonic Idh3g synonymous SNV uc009tmq.1:c.C1092T:p.G364G exonic ENSMUSG00000002010 synonymous SNV ENSMUST00000168526:c.C1092T:p.G364G XqA7.3 NA NA chrX 71024487 CTGxCCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.423472 0.423478 0.999988 57 2 0 12.606588 0.285714 0.02 -0.184122 15 6 415 152 60 60 0 0 GG 7.812491 26 0 688 0 KEEP - Idh3g YES MNNG_4 chrX 71439094 71439094 C T intronic Tktl1 NA NA intronic Tktl1 NA NA intronic ENSMUSG00000031397 NA NA XqA7.3 NA NA chrX 71439094 TTCxTTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.948361 0.948402 0.999957 79 0 0 80.807757 0.625 0.02 -0.420864 18 30 497 803 60 60 0 0 CC 7.821278 26 0 741 0 KEEP + Tktl1 YES MNNG_4 chrX 71488026 71488026 C T intronic Flna NA NA intronic Flna NA NA intronic ENSMUSG00000031328 NA NA XqA7.3 NA NA chrX 71488026 TAAxCAA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 113 0 0 82.8763 0.738095 0.02 -0.368129 11 31 289 786 60 60 0 0 CC 18.036851 60 0 1640 0 KEEP - Flna YES MNNG_4 chrX 71560752 71560752 C T intronic Fam50a NA NA intronic Fam50a NA NA intronic ENSMUSG00000001962 NA NA XqA7.3 NA NA chrX 71560752 CACxCAT C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 58 0 0 41.575662 0.681818 0.02 -0.19287 7 15 184 404 60 60 0 0 CC 8.687797 29 0 784 0 KEEP + Fam50a YES MNNG_4 chrX 71726533 71726533 G A exonic Gm6880 nonsynonymous SNV NM_001099305:c.C206T:p.A69V exonic Gm6880 nonsynonymous SNV uc009tpg.1:c.C206T:p.A69V exonic ENSMUSG00000079536 nonsynonymous SNV ENSMUST00000114125:c.C206T:p.A69V XqA7.3 "Score=0.968755;Name=No.113421,chrX:72199809" NA chrX 71726533 GCAxCCT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.967423 0.967425 0.999998 99 1 10 25.745408 0.235294 0.02 1.141414 39 12 1078 321 60 60 0 0 GG 12.333705 41 0 1169 0 KEEP - Gm6880 YES MNNG_4 chrX 73642555 73642555 C T exonic 4930428D18Rik synonymous SNV NM_001033799:c.C78T:p.I26I exonic 4930428D18Rik synonymous SNV uc009tqn.1:c.C78T:p.I26I exonic ENSMUSG00000073085 synonymous SNV ENSMUST00000101419:c.C78T:p.I26I XqA7.3 NA NA chrX 73642555 TATxTCC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 81 0 0 65.987057 0.666667 0.02 -0.324422 12 24 333 645 60 60 0 0 CC 11.431864 38 0 1096 0 KEEP + 4930428D18Rik YES MNNG_4 chrX 74895771 74895771 G A exonic Tbl1x nonsynonymous SNV NM_020601:c.G1028A:p.C343Y exonic Tbl1x nonsynonymous SNV uc009tqo.1:c.G1028A:p.C343Y exonic ENSMUSG00000025246 nonsynonymous SNV ENSMUST00000088217:c.G1028A:p.C343Y XqA7.3 NA NA chrX 74895771 TGTxCAT G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 126 0 0 21.863457 0.23913 0.02 -0.403279 35 11 950 276 60 60 0 0 GG 20.72999 69 0 1894 0 KEEP + Tbl1x YES MNNG_4 chrX 7500060 7500060 G A exonic Pcsk1n nonsynonymous SNV NM_013892:c.G608A:p.G203E exonic Pcsk1n nonsynonymous SNV uc009snf.2:c.G608A:p.G203E exonic ENSMUSG00000039278 nonsynonymous SNV ENSMUST00000041096:c.G608A:p.G203E XqA1.1 NA NA chrX 7500060 CCGxAAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 0.999999 123 0 0 45.92758 0.313433 0.02 0.912736 46 21 1254 540 60 60 0 0 GG 10.756786 36 0 965 0 KEEP + Pcsk1n YES MNNG_4 chrX 7648344 7648344 C T exonic Suv39h1 synonymous SNV NM_011514:c.G198A:p.G66G exonic Suv39h1 synonymous SNV uc009snp.2:c.G201A:p.G67G exonic ENSMUSG00000039231 synonymous SNV ENSMUST00000115636:c.G198A:p.G66G XqA1.1 NA NA chrX 7648344 ATAxCCA C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 48 0 0 41.521388 0.571429 0.02 -0.2455 12 16 333 422 60 60 0 0 CC 6.015762 20 0 557 0 KEEP - Suv39h1 YES MNNG_4 chrX 83992800 83992800 G A exonic Il1rapl1 synonymous SNV NM_001160403:c.C1872T:p.Y624Y exonic Il1rapl1 synonymous SNV uc012hln.1:c.C1872T:p.Y624Y exonic ENSMUSG00000052372 synonymous SNV ENSMUST00000078875:c.C1872T:p.Y624Y XqC1 NA NA chrX 83992800 ATAxTAG G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999997 83 0 0 32.842354 0.326087 0.02 -0.403282 31 15 835 383 60 60 0 0 GG 9.323747 31 0 853 0 KEEP - Il1rapl1 YES MNNG_4 chrX 8422555 8422555 G A intronic Gm6592 NA NA intronic Gm6592 NA NA intronic ENSMUSG00000079699 NA NA XqA1.1 "Score=0.928811;Name=No.107532,chrX:8451291" NA chrX 8422555 TCAxCAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 192 0 0 63.654001 0.318182 0.02 0.825762 60 28 1657 742 60 60 0 0 GG 27.07421 90 0 2577 0 KEEP + Gm6592 YES MNNG_4 chrX 8927995 8927995 C T exonic Gm14501 synonymous SNV NM_001085537:c.C174T:p.I58I exonic Gm14501 synonymous SNV uc009spt.2:c.C174T:p.I58I exonic ENSMUSG00000063080 synonymous SNV ENSMUST00000073949:c.C174T:p.I58I XqA1.1 "Score=0.965517;Name=No.107582,chrX:13788044" NA chrX 8927995 CATxCTC C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 417 2 113 184.632317 0.598291 0.02 2.071562 47 70 1290 1855 36 36 0 0 CC 59.550142 198 0 5579 0 KEEP + Gm14501 YES MNNG_4 chrX 99314874 99314874 G A exonic Pin4 nonsynonymous SNV NM_027181:c.G14A:p.G5E exonic Pin4 nonsynonymous SNV uc009tyj.1:c.G14A:p.G5E exonic ENSMUSG00000079480 nonsynonymous SNV ENSMUST00000113627:c.G14A:p.G5E XqD NA NA chrX 99314874 AGGxGAA G A OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 124 0 0 32.820967 0.358974 0.02 -0.34194 25 14 677 372 60 60 0 0 GG 19.245812 64 0 1756 0 KEEP + Pin4 YES MNNG_4 chrX 99736689 99736689 C T intronic Phka1 NA NA intronic Phka1 NA NA intronic ENSMUSG00000034055 NA NA XqD NA NA chrX 99736689 AGGxTAG C T OtA1981_Annette.Weninger_301-510_mEX-30X_12292013 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 120 0 0 102.967587 0.678571 0.02 1.106696 18 38 478 1001 60 60 0 0 CC 13.833622 46 0 1270 0 KEEP - Phka1 YES Spont_1 chr10 119602212 119602212 G C exonic Irak3 nonsynonymous SNV NM_028679:c.C863G:p.A288G exonic Irak3 nonsynonymous SNV uc007het.1:c.C863G:p.A288G exonic ENSMUSG00000020227 nonsynonymous SNV ENSMUST00000020448:c.C863G:p.A288G 10qD2 NA NA chr10 119602212 TTGxCTA G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877706 0.877708 0.999997 89 2 0 9.849141 0.125 0.02 -0.350351 35 5 984 140 60 60 0 0 GG 9.625351 32 0 894 0 KEEP - Irak3 YES Spont_1 chr10 127954812 127954812 G C exonic Esyt1 nonsynonymous SNV NM_011843:c.C1611G:p.D537E exonic Esyt1 nonsynonymous SNV uc007hng.1:c.C1611G:p.D537E exonic ENSMUSG00000025366 nonsynonymous SNV ENSMUST00000026427:c.C1611G:p.D537E 10qD3 NA NA chr10 127954812 GTCxTCC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582561 0.58293 0.999366 51 2 0 11.460878 0.192308 0.02 -0.227928 21 5 555 146 60 60 0 0 GG 5.109486 17 0 431 0 KEEP - Esyt1 YES Spont_1 chr10 129823001 129823001 T C exonic Vmn2r84 nonsynonymous SNV NM_001081448:c.A2405G:p.K802R exonic Vmn2r84 nonsynonymous SNV uc007hrn.1:c.A2405G:p.K802R exonic ENSMUSG00000070601 nonsynonymous SNV ENSMUST00000094502:c.A2405G:p.K802R 10qD3 "Score=0.932;Name=No.6058,chr10:129882202" NA chr10 129823001 ACCxTCC T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 706 28 39 24.503869 0.051903 0.02 6.810565 274 15 7762 429 60 20 0 0 TT 82.341171 274 0 7488 0 KEEP - Vmn2r84 NO Spont_1 chr10 83990658 83990658 C G exonic Ckap4 nonsynonymous SNV NM_175451:c.G1285C:p.A429P exonic Ckap4 nonsynonymous SNV uc007gkq.1:c.G1285C:p.A429P exonic ENSMUSG00000046841 nonsynonymous SNV ENSMUST00000053871:c.G1285C:p.A429P 10qC1 NA NA chr10 83990658 TAGxCAG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 119 0 0 8.411373 0.119048 0.02 -0.366961 37 5 994 126 60 60 0 0 CC 19.540123 65 0 1725 0 KEEP - Ckap4 YES Spont_1 chr10 86296833 86296833 C A exonic Nt5dc3 nonsynonymous SNV NM_175331:c.C1546A:p.P516T exonic Nt5dc3 nonsynonymous SNV uc007gqm.1:c.C1327A:p.P443T exonic ENSMUSG00000054027 nonsynonymous SNV ENSMUST00000099396:c.C1546A:p.P516T 10qC1 NA NA chr10 86296833 TACxCCA C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 202 2 0 22.542214 0.166667 0.02 1.116442 55 11 1579 302 60 60 0 0 CC 30.679066 102 0 2840 0 KEEP + Nt5dc3 NO Spont_1 chr11 101035862 101035862 G C exonic Ccr10 nonsynonymous SNV NM_007721:c.C155G:p.A52G exonic Ccr10 nonsynonymous SNV uc007lns.1:c.C155G:p.A52G exonic ENSMUSG00000044052 nonsynonymous SNV ENSMUST00000062759:c.C155G:p.A52G 11qD NA NA chr11 101035862 ACAxCCA G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.999859 36 0 0 36.21342 0.75 0.02 -0.140319 4 12 118 344 60 60 0 0 GG 5.400877 18 0 483 0 KEEP - Ccr10 YES Spont_1 chr11 116158934 116158934 C G exonic Exoc7 nonsynonymous SNV NM_016857:c.G852C:p.Q284H exonic Exoc7 nonsynonymous SNV uc007mkt.2:c.G852C:p.Q284H exonic ENSMUSG00000020792 nonsynonymous SNV ENSMUST00000021147:c.G852C:p.Q284H 11qE2 NA NA chr11 116158934 ATGxTGG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 211 0 0 55.563497 0.244898 0.02 0.934052 74 24 2180 678 60 60 0 0 CC 21.6585 72 0 2051 0 KEEP - Exoc7 YES Spont_1 chr11 117725474 117725474 C A exonic Tmem235 stopgain SNV NM_001085535:c.C437A:p.S146X exonic Gm12581 stopgain SNV uc007mof.1:c.C437A:p.S146X exonic ENSMUSG00000070330 stopgain SNV ENSMUST00000093905:c.C437A:p.S146X 11qE2 NA NA chr11 117725474 ACTxACA C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 345 5 0 53.898337 0.166667 0.02 3.717628 130 26 3812 720 60 60 0 0 CC 35.734671 119 0 3377 0 KEEP + Tmem235 NO Spont_1 chr11 4964217 4964217 G C exonic Gas2l1 nonsynonymous SNV NM_001190406:c.C245G:p.T82S exonic Gas2l1 nonsynonymous SNV uc007hvr.2:c.C245G:p.T82S exonic ENSMUSG00000034201 nonsynonymous SNV ENSMUST00000109895:c.C245G:p.T82S 11qA1 NA NA chr11 4964217 CGGxTTG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 90 2 0 8.359032 0.137931 0.02 -0.263093 25 4 714 115 60 60 0 0 GG 14.114978 47 0 1261 0 KEEP - Gas2l1 YES Spont_1 chr11 54807889 54807889 C G intronic Anxa6 NA NA intronic Anxa6 NA NA intronic ENSMUSG00000018340 NA NA 11qB1.3 NA NA chr11 54807889 CCAxACA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 204 0 0 11.200405 0.066667 0.02 1.102861 84 6 2446 179 60 60 0 0 CC 25.558463 85 0 2386 0 KEEP - Anxa6 YES Spont_1 chr11 58630556 58630556 C A exonic Olfr313 nonsynonymous SNV NM_146536:c.C45A:p.F15L exonic Olfr313 nonsynonymous SNV uc007jcj.2:c.C45A:p.F15L exonic ENSMUSG00000070438 nonsynonymous SNV ENSMUST00000082220:c.C45A:p.F15L 11qB1.3 NA NA chr11 58630556 CTTxTCA C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 291 1 3 118.00194 0.362319 0.02 2.082432 88 50 2601 1334 60 60 0 0 CC 37.292663 124 0 3522 0 KEEP + Olfr313 NO Spont_1 chr11 6238620 6238620 C G exonic Ogdh nonsynonymous SNV NM_001252287:c.C693G:p.C231W exonic Ogdh nonsynonymous SNV uc007hyf.1:c.C693G:p.C231W exonic ENSMUSG00000020456 nonsynonymous SNV ENSMUST00000003461:c.C693G:p.C231W 11qA1 NA NA chr11 6238620 ATGxCAG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552837 0.552887 0.999909 58 0 0 11.25447 0.2 0.02 -0.219253 20 5 582 143 60 60 0 0 CC 7.218821 24 0 666 0 KEEP + Ogdh YES Spont_1 chr11 69982176 69982176 C A exonic Clec10a synonymous SNV NM_001204252:c.C153A:p.V51V exonic Clec10a synonymous SNV uc007jtw.1:c.C153A:p.V51V exonic ENSMUSG00000000318 synonymous SNV ENSMUST00000000327:c.C153A:p.V51V 11qB3 "Score=0.967262;Name=No.13003,chr11:69948535" NA chr11 69982176 GGTxGTC C A 3-Mef-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.999987 0.999987 1 267 4 0 86.329307 0.330189 0.02 2.658826 71 35 1769 988 60 60 0 0 CC 30.878702 103 0 2500 0 KEEP + Clec10a NO Spont_1 chr11 72812986 72812986 G C intronic P2rx1 NA NA intronic P2rx1 NA NA intronic ENSMUSG00000020787 NA NA 11qB4 NA NA chr11 72812986 TGGxCAC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 548 6 0 18.776096 0.047619 0.02 5.140623 220 11 6161 327 60 60 0 0 GG 66.456325 221 0 6014 0 KEEP + P2rx1 YES Spont_1 chr11 77234765 77234765 A G exonic Ssh2 nonsynonymous SNV NM_177710:c.A581G:p.H194R exonic "Ssh2,mSSH-2L" nonsynonymous SNV uc007kgn.1:c.A602G:p.H201R exonic ENSMUSG00000037926 nonsynonymous SNV ENSMUST00000108396:c.A602G:p.H201R 11qB5 NA NA chr11 77234765 TGCxTAA A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 126 0 0 69.869956 0.483333 0.02 1.169285 31 29 848 741 60 60 0 0 AA 14.422791 48 0 1273 0 KEEP + Ssh2 NO Spont_1 chr11 94272855 94272855 G C exonic Cacna1g nonsynonymous SNV NM_001112813:c.C5815G:p.R1939G exonic Cacna1g nonsynonymous SNV uc007kyp.2:c.C589G:p.R197G exonic ENSMUSG00000020866 nonsynonymous SNV ENSMUST00000073986:c.C5761G:p.R1921G 11qD NA NA chr11 94272855 TCCxGCT G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.781006 0.78106 0.999931 70 0 0 13.741222 0.212121 0.02 -0.297729 26 7 665 178 60 60 0 0 GG 7.515591 25 0 661 0 KEEP - Cacna1g YES Spont_1 chr11 95890039 95890039 G C exonic Gip nonsynonymous SNV NM_008119:c.G273C:p.L91F exonic Gip nonsynonymous SNV uc007lba.1:c.G273C:p.L91F exonic ENSMUSG00000014351 nonsynonymous SNV ENSMUST00000103156:c.G273C:p.L91F 11qD NA NA chr11 95890039 TTTxGTG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 69 0 0 17.563399 0.269231 0.02 -0.228035 19 7 560 208 60 60 0 0 GG 8.723766 29 0 826 0 KEEP + Gip YES Spont_1 chr12 11888638 11888638 C G downstream Tubb2a-ps2 NA NA downstream Tubb2a-ps2 NA NA intergenic "ENSMUSG00000088565(dist=192828),ENSMUSG00000077204(dist=131791)" NA NA 12qA1.1 "Score=0.974461;Name=No.26406,chr13:34218865" NA chr12 11888638 CTGxCCC C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.385603 0.387407 0.995343 35 0 0 11.803463 0.25 0.02 -0.175321 15 5 415 143 60 60 0 0 CC 4.205209 14 0 374 0 KEEP NA Tubb2a-ps2 YES Spont_1 chr12 72238875 72238875 C G exonic 2700049A03Rik nonsynonymous SNV NM_001163378:c.C49G:p.P17A exonic 2700049A03Rik nonsynonymous SNV uc007nun.2:c.C49G:p.P17A exonic ENSMUSG00000034601 nonsynonymous SNV ENSMUST00000045907:c.C49G:p.P17A 12qC3 NA NA chr12 72238875 ATGxCAG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353179 0.353947 0.997832 40 0 0 15.017808 0.315789 0.02 -0.166584 13 6 363 173 60 60 0 0 CC 4.811256 16 0 432 0 KEEP + 2700049A03Rik YES Spont_1 chr12 99513861 99513861 T G exonic Gpr65 nonsynonymous SNV NM_008152:c.T562G:p.F188V exonic Gpr65 nonsynonymous SNV uc007olg.1:c.T562G:p.F188V exonic ENSMUSG00000021886 nonsynonymous SNV ENSMUST00000075072:c.T562G:p.F188V 12qE NA NA chr12 99513861 CTGxTTC T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 188 0 0 8.65056 0.067568 0.02 1.037581 69 5 1905 142 60 60 0 0 TT 24.653618 82 0 2211 0 KEEP + Gpr65 NO Spont_1 chr12 99971783 99971783 G C exonic Ptpn21 nonsynonymous SNV NM_001146199:c.C81G:p.I27M exonic Ptpn21 nonsynonymous SNV uc007ord.2:c.C81G:p.I27M exonic ENSMUSG00000021009 nonsynonymous SNV ENSMUST00000085116:c.C81G:p.I27M 12qE NA NA chr12 99971783 CTGxATC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 82 0 0 16.458789 0.184211 0.02 -0.333267 31 7 899 210 60 60 0 0 GG 10.218718 34 0 935 0 KEEP - Ptpn21 YES Spont_1 chr13 110739566 110739566 T C intronic Pde4d NA NA intronic Pde4d NA NA intronic ENSMUSG00000021699 NA NA 13qD2.2 NA NA chr13 110739566 CGTxTGC T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 179 0 0 9.473418 0.071429 0.02 1.27874 65 5 1819 149 60 60 0 0 TT 25.845742 86 0 2355 0 KEEP + Pde4d NO Spont_1 chr13 24560484 24560484 G C exonic Cmah nonsynonymous SNV NM_001284520:c.G1589C:p.C530S exonic Cmah nonsynonymous SNV uc007pvv.2:c.G1727C:p.C576S exonic ENSMUSG00000016756 nonsynonymous SNV ENSMUST00000110390:c.G1589C:p.C530S 13qA3.1 NA NA chr13 24560484 ACTxTGA G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 137 4 0 30.714682 0.3 0.02 -0.350808 28 12 811 356 60 60 0 0 GG 19.84447 66 0 1830 0 KEEP + Cmah YES Spont_1 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 174 0 7 9.829297 1 0.02 -0.07016 0 3 0 84 0 29 0 0 CC 38.806443 129 0 3718 0 KEEP NA BC052688 NO Spont_1 chr13 65442490 65442490 A G intergenic "Zfp369(dist=43387),Gm10324(dist=771899)" NA NA intergenic "Zfp369(dist=43387),AK145544(dist=57800)" NA NA intergenic "ENSMUSG00000021514(dist=36961),ENSMUSG00000090514(dist=38211)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442490 ACCxTGT A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 186 8 19 7.513313 0.086957 0.02 1.204206 42 4 1139 115 60 20 0 0 AA 30.674498 102 0 2747 0 KEEP NA Zfp369 NO Spont_1 chr13 65442544 65442544 C A intergenic "Zfp369(dist=43441),Gm10324(dist=771845)" NA NA intergenic "Zfp369(dist=43441),AK145544(dist=57746)" NA NA intergenic "ENSMUSG00000021514(dist=37015),ENSMUSG00000090514(dist=38157)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442544 AACxTTT C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 112 6 34 8.363866 0.2 0.02 -0.192941 16 4 471 108 29 20 0 0 CC 20.154559 67 0 1920 0 KEEP NA Zfp369 NO Spont_1 chr13 66816412 66816412 G C intergenic "2410141K09Rik(dist=274358),Uqcrb(dist=185145)" NA NA ncRNA_intronic AK049212 NA NA intergenic "ENSMUSG00000078996(dist=28521),ENSMUSG00000090632(dist=135867)" NA NA 13qB3 "Score=0.982334;Name=No.34308,chr13:66500822" NA chr13 66816412 CCAxCAG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994292 0.994422 0.999869 122 3 6 9.209938 0.079365 0.02 1.116386 58 5 1698 144 60 38 0 0 GG 6.317424 21 0 602 0 KEEP - 2410141K09Rik YES Spont_1 chr13 66816489 66816489 G T intergenic "2410141K09Rik(dist=274435),Uqcrb(dist=185068)" NA NA ncRNA_intronic AK049212 NA NA intergenic "ENSMUSG00000078996(dist=28598),ENSMUSG00000090632(dist=135790)" NA NA 13qB3 "Score=0.982334;Name=No.34308,chr13:66500822" NA chr13 66816489 CTTxTGG G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934364 0.934492 0.999863 87 3 16 7.593668 0.090909 0.02 -0.403378 40 4 1115 115 57 23 0 0 GG 6.014626 20 0 540 0 KEEP - 2410141K09Rik NO Spont_1 chr13 66955862 66955862 T A intergenic "2410141K09Rik(dist=413808),Uqcrb(dist=45695)" NA NA intergenic "AK049212(dist=101943),Uqcrb(dist=45695)" NA NA intronic ENSMUSG00000071295 NA NA 13qB3 "Score=0.980557;Name=No.34397,chr13:66750246" NA chr13 66955862 TACxTAT T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 203 4 24 8.853198 0.75 0.02 -0.035078 1 3 29 84 15 29 0 0 TT 49.904069 166 0 4611 0 KEEP NA 2410141K09Rik NO Spont_1 chr13 66955894 66955894 A G intergenic "2410141K09Rik(dist=413840),Uqcrb(dist=45663)" NA NA intergenic "AK049212(dist=101975),Uqcrb(dist=45663)" NA NA splicing ENSMUSG00000071295(ENSMUST00000079229:exon2:c.3+2T>C) NA NA 13qB3 "Score=0.980557;Name=No.34397,chr13:66750246" NA chr13 66955894 ATCxCCA A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 187 4 29 12.281191 0.625 0.02 -0.070117 3 5 84 122 25 29 0 0 AA 41.491178 138 0 3682 0 KEEP NA 2410141K09Rik NO Spont_1 chr13 67772577 67772577 A T intronic Zfp738 NA NA intronic Zfp738 NA NA intronic ENSMUSG00000048280 NA NA 13qB3 "Score=0.942784;Name=No.34482,chr13:67718617" NA chr13 67772577 GTGxAGG A T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 273 9 0 9.230418 0.06 0.02 2.274301 94 6 2677 162 60 47 0 0 AA 35.794329 119 0 3323 0 KEEP - Zfp738 NO Spont_1 chr14 20420773 20420773 T A exonic Gm5458 nonsynonymous SNV NM_001024706:c.A236T:p.D79V exonic Gm5458 nonsynonymous SNV uc011zgi.1:c.A236T:p.D79V exonic ENSMUSG00000071574 nonsynonymous SNV ENSMUST00000096121:c.A236T:p.D79V 14qA3 "Score=0.986572;Name=No.49681,chr14:7155478" NA chr14 20420773 ATGxCAT T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1643 210 648 195.568452 0.253731 0.02 7.823464 250 85 7111 2374 46 37 0 0 TT 212.934432 708 0 19576 0 KEEP - Gm5458 NO Spont_1 chr14 52032726 52032726 G A exonic Vmn2r88 nonsynonymous SNV NM_011686:c.G220A:p.E74K exonic "Vmn2r-ps160,Vmn2r88" nonsynonymous SNV uc009vao.1:c.G220A:p.E74K exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000022438:c.G220A:p.E74K 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032726 AGTxAAT G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 378 6 2 15.102694 0.084112 0.02 3.53249 98 9 2905 242 70 60 0 0 GG 47.833081 159 0 4586 0 KEEP + Vmn2r88 NO Spont_1 chr14 52032928 52032928 C A exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C422A:p.A141D exonic "Vmn2r-ps160,Vmn2r88" nonsynonymous SNV uc009vao.1:c.C422A:p.A141D exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000022438:c.C422A:p.A141D 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032928 GTGxCAT C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 249 6 0 28.238453 0.142857 0.02 2.455843 84 14 2408 390 60 60 0 0 CC 28.874457 96 0 2654 0 KEEP + Vmn2r88 NO Spont_1 chr14 52032935 52032935 T C exonic Vmn2r88 synonymous SNV NM_011686:c.T429C:p.G143G exonic "Vmn2r-ps160,Vmn2r88" synonymous SNV uc009vao.1:c.T429C:p.G143G exonic ENSMUSG00000000606 synonymous SNV ENSMUST00000022438:c.T429C:p.G143G 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032935 AGGxCTT T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 260 7 0 84.026945 0.317308 0.02 2.626834 71 33 1975 965 60 60 0 0 TT 30.046655 100 0 2713 0 KEEP + Vmn2r88 NO Spont_1 chr14 52033797 52033797 T A exonic Vmn2r88 nonsynonymous SNV NM_011686:c.T916A:p.S306T exonic "Vmn2r-ps160,Vmn2r88" nonsynonymous SNV uc009vao.1:c.T916A:p.S306T exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000022438:c.T892A:p.S298T 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52033797 ACCxCAC T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 477 41 31 15.686296 0.05618 0.02 3.064783 168 10 4772 276 60 37 0 0 TT 55.299563 184 0 5098 0 KEEP + Vmn2r88 NO Spont_1 chr14 52036477 52036477 C T exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C1640T:p.P547L exonic Vmn2r88 nonsynonymous SNV uc009vao.1:c.C1640T:p.P547L exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000159674:c.C1481T:p.P494L 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52036477 GCCxAGA C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 615 26 11 36.697025 0.095238 0.02 4.862342 190 20 5647 558 60 60 0 0 CC 86.019164 286 0 8140 0 KEEP + Vmn2r88 NO Spont_1 chr14 67858315 67858315 G A exonic Ebf2 nonsynonymous SNV NM_001276387:c.G469A:p.E157K exonic Ebf2 nonsynonymous SNV uc007ukx.1:c.G469A:p.E157K exonic ENSMUSG00000022053 nonsynonymous SNV ENSMUST00000022637:c.G469A:p.E157K 14qD1 NA NA chr14 67858315 CACxAGG G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 153 0 0 184.676849 1 0.02 1.302477 0 56 0 1580 0 60 0 0 GG 18.039657 60 0 1622 0 KEEP + Ebf2 NO Spont_1 chr15 58146392 58146392 C A exonic Klhl38 nonsynonymous SNV NM_177755:c.G1736T:p.S579I exonic Klhl38 nonsynonymous SNV uc007vtl.1:c.G1736T:p.S579I exonic ENSMUSG00000022357 nonsynonymous SNV ENSMUST00000022985:c.G1736T:p.S579I 15qD1 NA NA chr15 58146392 AGGxTGG C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 283 2 0 11.013551 0.063492 0.02 2.082276 118 8 3345 199 60 60 0 0 CC 35.765807 119 0 3286 0 KEEP - Klhl38 NO Spont_1 chr15 66776372 66776372 C G exonic Ndrg1 nonsynonymous SNV NM_008681:c.G355C:p.A119P exonic Ndrg1 nonsynonymous SNV uc007wax.1:c.G355C:p.A119P exonic ENSMUSG00000005125 nonsynonymous SNV ENSMUST00000168542:c.G146C:p.G49A 15qD2 NA NA chr15 66776372 CAGxCAA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 246 0 0 49.524002 0.21875 0.02 1.041613 75 21 2162 614 60 60 0 0 CC 27.364377 91 0 2506 0 KEEP - Ndrg1 YES Spont_1 chr15 76007227 76007227 G T exonic Plec nonsynonymous SNV NM_011117:c.C9092A:p.S3031Y exonic Plec nonsynonymous SNV uc007wir.2:c.C9005A:p.S3002Y exonic ENSMUSG00000022565 nonsynonymous SNV ENSMUST00000023226:c.C9005A:p.S3002Y 15qD3 NA NA chr15 76007227 ACAxAAC G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 206 4 0 9.173415 0.068182 0.02 0.693415 82 6 2392 158 60 60 0 0 GG 24.665096 82 0 2326 0 KEEP - Plec NO Spont_1 chr15 76135601 76135601 C G exonic Oplah nonsynonymous SNV NM_153122:c.G752C:p.G251A exonic Oplah nonsynonymous SNV uc007wjo.1:c.G752C:p.G251A exonic ENSMUSG00000022562 nonsynonymous SNV ENSMUST00000023222:c.G752C:p.G251A 15qD3 NA NA chr15 76135601 AAGxCCT C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 155 0 0 17.78939 0.104651 0.02 1.039802 77 9 2164 260 60 60 0 0 CC 15.926801 53 0 1425 0 KEEP - Oplah YES Spont_1 chr15 76535218 76535218 C G exonic Recql4 nonsynonymous SNV NM_058214:c.G3028C:p.A1010P exonic Recql4 nonsynonymous SNV uc007wlv.1:c.G2899C:p.A967P exonic ENSMUSG00000033762 nonsynonymous SNV ENSMUST00000109798:c.G3178C:p.A1060P 15qD3 NA NA chr15 76535218 AGGxCAA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 130 0 0 35.160961 0.258621 0.02 1.284887 43 15 1240 424 60 60 0 0 CC 15.018526 50 0 1362 0 KEEP - Recql4 YES Spont_1 chr15 81811825 81811825 C G UTR3 1700029P11Rik NA NA UTR3 1700029P11Rik NA NA UTR3 ENSMUSG00000061633 NA NA 15qE1 "Score=0.964775;Name=No.61375,chrX:100423024" NA chr15 81811825 CCCxTCT C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 320 4 0 39.466881 0.14 0.02 3.743938 129 21 3781 558 60 60 0 0 CC 37.866207 126 0 3535 0 KEEP + 1700029P11Rik YES Spont_1 chr15 83421791 83421791 C G intronic Ttll12 NA NA intronic Ttll12 NA NA intronic ENSMUSG00000016757 NA NA 15qE1 NA NA chr15 83421791 ATGxCCA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 108 0 0 36.792874 0.263158 0.02 1.392326 42 15 1183 439 60 60 0 0 CC 11.1278 37 0 1013 0 KEEP - Ttll12 YES Spont_1 chr15 94184052 94184052 G A exonic Adamts20 synonymous SNV NM_001164785:c.C1284T:p.A428A exonic Adamts20 synonymous SNV uc007xje.2:c.C1284T:p.A428A exonic ENSMUSG00000022449 synonymous SNV ENSMUST00000035342:c.C1284T:p.A428A 15qE3 NA NA chr15 94184052 CGGxGCC G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 85 1 0 13.250579 0.193548 0.02 -0.271868 25 6 722 170 60 60 0 0 GG 11.42944 38 0 1058 0 KEEP - Adamts20 NO Spont_1 chr16 11074561 11074561 A T UTR3 Snn NA NA UTR3 Snn NA NA UTR3 ENSMUSG00000037972 NA NA 16qA1 NA NA chr16 11074561 TCAxGTT A T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 163 2 0 10.146592 0.084507 0.02 0.974717 65 6 1857 162 60 60 0 0 AA 20.717374 69 0 1884 0 KEEP + Snn NO Spont_1 chr16 14215956 14215956 G C exonic Myh11 nonsynonymous SNV NM_001161775:c.C3166G:p.L1056V exonic Myh11 nonsynonymous SNV uc007yhd.2:c.C3166G:p.L1056V exonic ENSMUSG00000018830 nonsynonymous SNV ENSMUST00000077248:c.C3202G:p.L1068V 16qA1 NA NA chr16 14215956 TGAxTTT G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 220 0 0 35.934739 0.179775 0.02 1.01303 73 16 2100 465 60 60 0 0 GG 26.168366 87 0 2430 0 KEEP - Myh11 YES Spont_1 chr16 17211869 17211869 T C exonic Rimbp3 synonymous SNV NM_001033338:c.T3063C:p.T1021T exonic Rimbp3 synonymous SNV uc007ykn.2:c.T3063C:p.T1021T exonic ENSMUSG00000071636 synonymous SNV ENSMUST00000096223:c.T2715C:p.T905T 16qA3 NA NA chr16 17211869 GACxCCC T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999997 83 1 0 15.772624 0.179487 0.02 -0.341985 32 7 895 204 60 60 0 0 TT 9.290706 31 0 856 0 KEEP + Rimbp3 NO Spont_1 chr16 17212426 17212426 A G exonic Rimbp3 nonsynonymous SNV NM_001033338:c.A3620G:p.K1207R exonic Rimbp3 nonsynonymous SNV uc007ykn.2:c.A3620G:p.K1207R exonic ENSMUSG00000071636 nonsynonymous SNV ENSMUST00000096223:c.A3272G:p.K1091R 16qA3 NA NA chr16 17212426 CCAxGTC A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 145 0 0 13.4594 0.112903 0.02 1.339697 55 7 1579 196 60 60 0 0 AA 20.449283 68 0 1870 0 KEEP + Rimbp3 NO Spont_1 chr16 17835564 17835564 A T exonic Car15 nonsynonymous SNV NM_030558:c.T831A:p.N277K exonic Car15 nonsynonymous SNV uc007ymg.1:c.T831A:p.N277K exonic ENSMUSG00000090236 nonsynonymous SNV ENSMUST00000090144:c.T912A:p.N304K 16qA3 NA NA chr16 17835564 GAAxTTA A T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641278 0.641347 0.999892 59 0 0 10.683199 0.178571 0.02 -0.245505 23 5 623 140 60 60 0 0 AA 6.915155 23 0 608 0 KEEP - Car15 NO Spont_1 chr16 35858294 35858294 C A exonic Parp14 nonsynonymous SNV NM_001039530:c.G1389T:p.Q463H exonic Parp14 nonsynonymous SNV uc007zbs.2:c.G1389T:p.Q463H exonic ENSMUSG00000034422 nonsynonymous SNV ENSMUST00000042665:c.G1389T:p.Q463H 16qB3 NA NA chr16 35858294 ACTxTGC C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 204 1 0 87.030435 0.377551 0.02 0.83585 61 37 1802 976 60 60 0 0 CC 24.366879 81 0 2323 0 KEEP - Parp14 NO Spont_1 chr16 38193957 38193957 A G intronic Gsk3b NA NA intronic Gsk3b NA NA intronic ENSMUSG00000022812 NA NA 16qB3 NA NA chr16 38193957 ATAxACT A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612323 0.612407 0.999863 56 0 0 11.660776 0.192308 0.02 -0.236699 21 5 579 148 60 60 0 0 AA 6.014907 20 0 545 0 KEEP + Gsk3b NO Spont_1 chr16 48450123 48450123 A T exonic Morc1 stopgain SNV NM_010816:c.A322T:p.R108X exonic Morc1 stopgain SNV uc007zjp.1:c.A322T:p.R108X exonic ENSMUSG00000022652 stopgain SNV ENSMUST00000023330:c.A322T:p.R108X 16qB5 NA NA chr16 48450123 ATGxGAA A T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 108 0 0 7.336532 0.083333 0.02 -0.429549 44 4 1259 114 60 60 0 0 AA 11.731042 39 0 1091 0 KEEP + Morc1 NO Spont_1 chr16 90496947 90496947 C A exonic Hunk nonsynonymous SNV NM_015755:c.C2099A:p.S700Y exonic Hunk nonsynonymous SNV uc007zwi.1:c.C2099A:p.S700Y exonic ENSMUSG00000053414 nonsynonymous SNV ENSMUST00000065856:c.C2099A:p.S700Y 16qC3.3 NA NA chr16 90496947 CCTxCAG C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 319 5 0 14.446659 0.06993 0.02 1.940801 133 10 3886 253 60 60 0 0 CC 35.489257 118 0 3326 0 KEEP + Hunk NO Spont_1 chr16 90753959 90753959 G C exonic Urb1 synonymous SNV NM_029497:c.C6249G:p.G2083G exonic Urb1 synonymous SNV uc007zwm.2:c.C6249G:p.G2083G exonic ENSMUSG00000039929 synonymous SNV ENSMUST00000140920:c.C6249G:p.G2083G 16qC3.3 NA NA chr16 90753959 CTGxCCC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 98 0 0 7.267341 0.08 0.02 -0.437458 46 4 1291 114 60 60 0 0 GG 11.028567 37 0 979 0 KEEP - Urb1 YES Spont_1 chr16 91621834 91621834 C G exonic Gart nonsynonymous SNV NM_010256:c.G3001C:p.D1001H exonic Gart nonsynonymous SNV uc007zxu.1:c.G3001C:p.D1001H exonic ENSMUSG00000022962 nonsynonymous SNV ENSMUST00000023684:c.G3001C:p.D1001H 16qC3.3 NA NA chr16 91621834 CATxTTC C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 46 0 0 6.561604 0.15 0.02 -0.175414 17 3 507 88 60 60 0 0 CC 5.114219 17 0 489 0 KEEP - Gart YES Spont_1 chr17 12596874 12596874 T A intronic Plg NA NA intronic Plg NA NA intronic ENSMUSG00000059481 NA NA 17qA1 NA NA chr17 12596874 TCCxACA T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 174 2 0 26.3185 0.1875 0.02 1.133994 52 12 1466 340 60 60 0 0 TT 22.546119 75 0 2034 0 KEEP + Plg NO Spont_1 chr17 23496748 23496748 T A exonic Vmn2r115 nonsynonymous SNV NM_001104579:c.T2227A:p.S743T exonic Vmn2r115 nonsynonymous SNV uc009vbs.1:c.T2227A:p.S743T exonic ENSMUSG00000091076 nonsynonymous SNV ENSMUST00000168175:c.T2227A:p.S743T 17qA3.3 "Score=0.924606;Name=No.65595,chr17:23572303" NA chr17 23496748 GGTxCAG T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 512 3 14 14.394141 0.04902 0.02 4.560574 194 10 5418 269 60 37 0 0 TT 70.682505 235 0 6518 0 KEEP + Vmn2r115 NO Spont_1 chr17 24731933 24731933 C G intronic Pkd1 NA NA intronic Pkd1 NA NA ncRNA_exonic ENSMUSG00000080342 NA NA 17qA3.3 NA NA chr17 24731933 CGGxCCA C G 3-Mef-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 321 1 0 82.775779 0.259259 0.02 2.494426 100 35 2790 996 60 60 0 0 CC 39.274055 131 0 3557 0 KEEP + Pkd1 YES Spont_1 chr17 24741747 24741747 C T intronic Tsc2 NA NA intronic Tsc2 NA NA intronic ENSMUSG00000002496 NA NA 17qA3.3 NA NA chr17 24741747 ACCxACC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 39 0 0 13.862239 0.3 0.02 -0.175114 14 6 375 163 60 60 0 0 CC 5.414142 18 0 500 0 KEEP - Tsc2 NO Spont_1 chr17 34169396 34169396 G C UTR5 Rxrb NA NA UTR5 Rxrb NA NA exonic ENSMUSG00000039656 nonsynonymous SNV ENSMUST00000044956:c.G377C:p.G126A 17qB1 NA NA chr17 34169396 TGGxCAT G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 543 6 0 89.058938 0.196078 0.02 5.530517 164 40 4702 1138 60 60 0 0 GG 66.33684 223 1 6132 6 KEEP + Rxrb YES Spont_1 chr17 35064681 35064681 C T exonic Slc44a4 synonymous SNV NM_023557:c.C1290T:p.G430G exonic Slc44a4 synonymous SNV uc008ceh.2:c.C1290T:p.G430G exonic ENSMUSG00000007034 synonymous SNV ENSMUST00000169230:c.C834T:p.G278G 17qB1 NA NA chr17 35064681 GGGxCTA C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 402 3 0 76.386945 0.213415 0.02 3.835342 129 35 3681 966 60 60 0 0 CC 52.887157 176 0 4817 0 KEEP + Slc44a4 NO Spont_1 chr17 37437178 37437178 T C exonic Olfr101 nonsynonymous SNV NM_146834:c.A188G:p.N63S exonic Olfr101 nonsynonymous SNV uc008cmq.1:c.A188G:p.N63S exonic ENSMUSG00000092077 nonsynonymous SNV ENSMUST00000058046:c.A188G:p.N63S 17qB1 "Score=0.919845;Name=No.65686,chr17:37450170" NA chr17 37437178 AGGxTTC T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 612 6 6 108.246399 0.189723 0.02 7.045137 205 48 5683 1387 60 60 0 0 TT 71.875909 239 0 6499 0 KEEP - Olfr101 NO Spont_1 chr17 43744312 43744312 A C exonic Pla2g7 nonsynonymous SNV NM_013737:c.A995C:p.K332T exonic Pla2g7 nonsynonymous SNV uc008cpe.1:c.A995C:p.K332T exonic ENSMUSG00000023913 nonsynonymous SNV ENSMUST00000024706:c.A995C:p.K332T 17qB3 NA NA chr17 43744312 AAAxGTT A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 102 0 0 31.946552 0.306122 0.02 -0.429605 34 15 967 379 60 60 0 1 AA 13.535487 45 0 1254 0 KEEP + Pla2g7 NO Spont_1 chr17 46248025 46248025 C G exonic Mrps18a nonsynonymous SNV NM_026768:c.C59G:p.A20G exonic Mrps18a nonsynonymous SNV uc008crs.1:c.C59G:p.A20G exonic ENSMUSG00000023967 nonsynonymous SNV ENSMUST00000024763:c.C59G:p.A20G 17qC NA NA chr17 46248025 TGGxAGG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120428 0.120436 0.999931 41 0 0 14.074624 0.5 0.02 -0.096472 5 5 144 147 60 60 0 0 CC 7.46123 25 0 640 0 KEEP + Mrps18a YES Spont_1 chr17 7932025 7932025 C T UTR3 Fndc1 NA NA UTR3 Fndc1 NA NA UTR3 ENSMUSG00000071984 NA NA 17qA1 NA NA chr17 7932025 TAGxGCA C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196286 0.196312 0.999869 41 0 0 22.18693 0.642857 0.02 -0.122387 5 9 136 219 60 60 0 0 CC 6.312512 21 0 547 0 KEEP - Fndc1 NO Spont_1 chr17 9861886 9861886 T A exonic Pabpc6 nonsynonymous SNV NM_001163836:c.A600T:p.E200D exonic Pabpc6 nonsynonymous SNV uc008ajy.2:c.A600T:p.E200D exonic ENSMUSG00000046173 nonsynonymous SNV ENSMUST00000057190:c.A600T:p.E200D 17qA1 NA NA chr17 9861886 ATCxTCT T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 169 1 0 23.467412 0.155844 0.02 1.019998 65 12 1854 322 60 60 0 0 TT 21.35274 71 0 1975 0 KEEP - Pabpc6 NO Spont_1 chr18 20841415 20841415 A C intergenic "Ttr(dist=8588),B4galt6(dist=1685)" NA NA intergenic "Ttr(dist=8588),B4galt6(dist=1685)" NA NA exonic ENSMUSG00000091449 nonsynonymous SNV ENSMUST00000165229:c.T50G:p.L17R 18qA2 NA NA chr18 20841415 AACxGCT A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 429 10 55 11.790078 0.046243 0.02 3.667268 165 8 4613 220 60 36 0 0 AA 43.85287 150 1 4089 11 KEEP NA Ttr NO Spont_1 chr18 22623852 22623852 T C intronic Asxl3 NA NA intronic Asxl3 NA NA intronic ENSMUSG00000045215 NA NA 18qA2 NA NA chr18 22623852 TCCxCTA T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.385603 0.387407 0.995343 39 0 0 6.661612 0.15 0.02 -0.1754 17 3 489 89 60 60 0 0 TT 4.211179 14 0 392 0 KEEP + Asxl3 NO Spont_1 chr19 13546093 13546093 T C exonic Olfr1474 nonsynonymous SNV NM_001011842:c.T632C:p.V211A exonic Olfr1474 nonsynonymous SNV uc008gvo.1:c.T632C:p.V211A exonic ENSMUSG00000071630 nonsynonymous SNV ENSMUST00000096202:c.T632C:p.V211A 19qA "Score=0.939843;Name=No.72628,chr19:13516989" NA chr19 13546093 TGGxTAT T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 223 0 0 44.861294 0.175439 0.02 2.784706 94 20 2609 583 60 60 0 0 TT 23.457432 78 0 2142 0 KEEP + Olfr1474 NO Spont_1 chr19 4006810 4006810 G C exonic Doc2g nonsynonymous SNV NM_021791:c.G1125C:p.W375C exonic Doc2g nonsynonymous SNV uc008fyd.1:c.G1125C:p.W375C exonic ENSMUSG00000024871 nonsynonymous SNV ENSMUST00000025806:c.G1125C:p.W375C 19qA NA NA chr19 4006810 GTGxCAC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 244 2 0 9.054259 0.05 0.02 2.411184 114 6 3172 165 60 60 0 0 GG 25.762226 86 0 2263 0 KEEP + Doc2g YES Spont_1 chr19 50752642 50752642 C T exonic Sorcs1 nonsynonymous SNV NM_001252501:c.G317A:p.G106D exonic Sorcs1 nonsynonymous SNV uc008hwa.2:c.G317A:p.G106D exonic ENSMUSG00000043531 nonsynonymous SNV ENSMUST00000076049:c.G317A:p.G106D 19qD1 NA NA chr19 50752642 CGGxCAG C T 3-Mef-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.640626 0.641347 0.998875 65 0 0 18.691688 0.296296 0.02 -0.245534 19 8 537 220 60 60 0 0 CC 8.420862 28 0 772 0 KEEP - Sorcs1 NO Spont_1 chr1 109168582 109168582 T A exonic Serpinb3c nonsynonymous SNV NM_201363:c.A785T:p.K262M exonic Serpinb3c nonsynonymous SNV uc007chk.2:c.A785T:p.K262M exonic ENSMUSG00000073601 nonsynonymous SNV ENSMUST00000027565:c.A785T:p.K262M 1qE2.1 "Score=0.906139;Name=No.366,chr1:109003834" NA chr1 109168582 AACxTGG T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 77 1 0 29.34139 0.363636 0.02 -0.288969 21 12 583 330 60 60 0 0 TT 11.129417 37 0 1034 0 KEEP - Serpinb3c NO Spont_1 chr1 109276331 109276331 A C exonic Serpinb11 nonsynonymous SNV NM_025867:c.A914C:p.D305A exonic Serpinb11 nonsynonymous SNV uc007chl.1:c.A914C:p.D305A exonic ENSMUSG00000026327 nonsynonymous SNV ENSMUST00000027566:c.A914C:p.D305A 1qE2.1 NA NA chr1 109276331 GGGxCAT A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 158 0 0 46.021085 0.311475 0.02 1.357709 42 19 1153 534 60 60 0 0 AA 20.750115 69 0 1875 0 KEEP + Serpinb11 NO Spont_1 chr1 12555759 12555759 C T intergenic "A830018L16Rik(dist=589776),Gm17644(dist=101885)" NA NA intergenic "A830018L16Rik(dist=589776),Sulf1(dist=126752)" NA NA intergenic "ENSMUSG00000064969(dist=190636),ENSMUSG00000066918(dist=101885)" NA NA 1qA3 "Score=0.95476;Name=No.3162,chr7:59001996" NA chr1 12555759 CAAxGAC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 707 15 48 16.601754 0.046332 0.02 5.19573 247 12 6366 319 60 23 0 0 CC 92.499746 312 1 7862 11 KEEP NA A830018L16Rik NO Spont_1 chr1 156291076 156291076 T G exonic Cacna1e nonsynonymous SNV NM_009782:c.A4193C:p.N1398T exonic Cacna1e nonsynonymous SNV uc007dav.1:c.A4193C:p.N1398T exonic ENSMUSG00000004110 nonsynonymous SNV ENSMUST00000004214:c.A4193C:p.N1398T 1qG3 NA NA chr1 156291076 CGGxTGC T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 85 0 0 6.870269 0.111111 0.02 -0.31559 32 4 883 104 60 60 0 0 TT 9.323502 31 0 848 0 KEEP - Cacna1e NO Spont_1 chr1 158296325 158296325 T C intergenic "Nphs2(dist=38159),Soat1(dist=61914)" NA NA intronic 9430070O13Rik NA NA exonic ENSMUSG00000078193 synonymous SNV ENSMUST00000102782:c.T117C:p.G39G 1qG3 NA NA chr1 158296325 CGGxGCC T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999957 1 0.999957 211 9 11 26.09407 0.107143 0.02 1.95974 125 15 3345 396 60 43 0 0 TT 7.818761 26 0 700 0 KEEP - Nphs2 NO Spont_1 chr1 180034226 180034226 C T intergenic "Gm16432(dist=55804),Desi2(dist=83322)" NA NA ncRNA_exonic EG545391 NA NA exonic ENSMUSG00000066667 nonsynonymous SNV ENSMUST00000111149:c.C1048T:p.L350F 1qH4 "Score=0.946144;Name=No.519,chr1:179767643" NA chr1 180034226 GTCxTTA C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.640941 0.641347 0.999366 64 1 0 11.481843 0.178571 0.02 -0.245579 23 5 683 148 60 60 0 0 CC 5.109775 17 0 477 0 KEEP + Gm16432 NO Spont_1 chr1 183682158 183682158 T A intergenic "Ccdc121(dist=240576),Lbr(dist=63288)" NA NA exonic Dnahc14 nonsynonymous SNV uc007dxl.1:c.T631A:p.L211M exonic ENSMUSG00000047369 nonsynonymous SNV ENSMUST00000160345:c.T631A:p.L211M 1qH5 NA NA chr1 183682158 TTCxTGA T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 196 0 0 26.909486 0.188406 0.02 1.090128 56 13 1615 352 60 60 0 0 TT 28.236888 94 0 2601 0 KEEP + Ccdc121 NO Spont_1 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 50 0 0 39.643688 0.8125 0.02 -0.149083 3 13 88 368 60 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO Spont_1 chr1 45446882 45446882 G T exonic Col5a2 nonsynonymous SNV NM_007737:c.C2920A:p.Q974K exonic Col5a2 nonsynonymous SNV uc007awr.1:c.C2920A:p.Q974K exonic ENSMUSG00000026042 nonsynonymous SNV ENSMUST00000086430:c.C2920A:p.Q974K 1qC1.1 NA NA chr1 45446882 GTTxTCC G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 146 1 0 41.603106 0.314815 0.02 1.319971 37 17 1073 481 60 60 0 0 GG 18.648678 62 0 1754 0 KEEP - Col5a2 NO Spont_1 chr1 57004962 57004962 C G exonic Satb2 nonsynonymous SNV NM_139146:c.G307C:p.A103P exonic Satb2 nonsynonymous SNV uc007bas.1:c.G307C:p.A103P exonic ENSMUSG00000038331 nonsynonymous SNV ENSMUST00000114415:c.G307C:p.A103P 1qC1.3 NA NA chr1 57004962 GGGxCAG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 59 0 0 11.853425 0.208333 0.02 -0.210474 19 5 539 148 60 60 0 0 CC 9.323708 31 0 852 0 KEEP - Satb2 YES Spont_1 chr1 75543444 75543444 C G UTR5 Slc4a3 NA NA UTR5 Slc4a3 NA NA UTR5 ENSMUSG00000006576 NA NA 1qC4 NA NA chr1 75543444 CTGxCAT C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 109 2 0 19.503461 0.25 0.02 -0.280646 24 8 694 235 60 60 0 0 CC 15.637511 52 0 1425 0 KEEP + Slc4a3 YES Spont_1 chr1 85081604 85081604 G A intergenic "Slc16a14(dist=149946),A530032D15Rik(dist=3110)" NA NA intronic "A530032D15Rik,Csprs" NA NA intronic ENSMUSG00000089844 NA NA 1qC5 "Score=0.987573;Name=No.556,chr1_random:477279" NA chr1 85081604 TGGxCAA G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 289 1 93 8.712604 0.072464 0.02 1.083726 64 5 1826 141 60 23 0 0 GG 37.987785 136 1 3801 27 KEEP - Slc16a14 NO Spont_1 chr1 87432842 87432842 A G intergenic "NONE(dist=NONE),Sp110(dist=40633)" NA NA upstream Csprs NA NA ncRNA_splicing "ENSMUSG00000090186(ENSMUST00000073378:exon2:c.115-2A>G,ENSMUST00000160674:exon2:c.27-2A>G)" NA NA 1qC5 "Score=0.987327;Name=No.292,chr1:85009334" NA chr1 87432842 TCTxGGA A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 249 1 25 24.660513 0.15493 0.02 1.269581 60 11 1670 327 36 52 0 0 AA 34.285659 114 0 3113 0 KEEP NA NONE NO Spont_1 chr1 89661877 89661877 C T intronic Atg16l1 NA NA intronic "APG16L,Atg16l1" NA NA intronic ENSMUSG00000026289 NA NA 1qD NA NA chr1 89661877 GTCxTTT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457697 0.457757 0.999869 50 0 0 48.822362 0.761905 0.02 -0.192925 5 16 149 462 60 60 0 0 CC 6.316399 21 0 586 0 KEEP + Atg16l1 NO Spont_1 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 489 0 0 21.925072 0.052632 0.02 6.732698 234 13 6202 378 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO Spont_1 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 483 4 0 24.409946 0.057143 0.02 5.025678 231 14 6708 410 70 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 NO Spont_1 chr1 90112835 90112835 C T exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1207T:p.R403C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1198T:p.R400C exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1201T:p.R401C 1qD NA NA chr1 90112835 AAGxGCA C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 176 0 0 9.825946 0.072289 0.02 0.860796 77 6 2154 163 60 60 0 0 CC 18.044386 60 0 1644 0 KEEP + Ugt1a1 NO Spont_1 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 199 0 0 28.52597 0.16092 0.02 1.022107 73 14 1943 385 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 YES Spont_1 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 181 0 0 12.354382 0.082353 0.02 0.95001 78 7 2252 195 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO Spont_1 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 382 4 0 26.825893 0.08805 0.02 3.74998 145 14 3957 407 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO Spont_1 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 478 3 0 15.337166 0.045082 0.02 3.940066 233 11 6719 295 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a NO Spont_1 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 255 0 0 11.871283 0.058333 0.02 2.331125 113 7 3291 201 70 60 0 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a NO Spont_1 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 255 0 0 11.623284 0.053846 0.02 2.348897 123 7 3383 201 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO Spont_1 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976863 0.976865 0.999998 114 0 0 25.899175 0.218182 0.02 1.115028 43 12 1237 327 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a NO Spont_1 chr1 90155318 90155318 T A intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90155318 GGTxGGG T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 211 0 0 9.023614 0.083333 0.02 2.605922 55 5 1498 141 60 60 0 0 TT 24.650705 82 0 2193 0 KEEP + Mroh2a NO Spont_1 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 219 0 0 17.560259 0.08547 0.02 2.266746 107 10 2925 276 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO Spont_1 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 460 1 0 10.257995 0.036842 0.02 3.411701 183 7 4851 199 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP - A730008H23Rik NO Spont_1 chr1 9536938 9536938 G T UTR3 Rrs1 NA NA UTR3 Rrs1 NA NA UTR3 ENSMUSG00000061024 NA NA 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536938 CTTxACT G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 404 18 13 52.234564 0.170068 0.02 2.289218 122 25 3605 694 60 60 0 0 GG 41.529006 148 1 4229 28 KEEP + Rrs1 NO Spont_1 chr2 101738996 101738996 T A intronic Commd9 NA NA intronic Commd9 NA NA intronic ENSMUSG00000027163 NA NA 2qE2 NA NA chr2 101738996 TTGxTTC T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 152 5 0 8.83981 0.089552 0.02 1.010403 61 6 1707 146 60 60 0 0 TT 16.842825 56 0 1540 0 KEEP + Commd9 NO Spont_1 chr2 124973160 124973160 A C UTR5 Ctxn2 NA NA UTR5 Ctxn2 NA NA UTR5 ENSMUSG00000074872 NA NA 2qF1 NA NA chr2 124973160 GGAxCTC A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 197 2 0 40.829184 0.208791 0.02 0.986939 72 19 2016 520 60 60 0 0 AA 23.45227 78 0 2103 0 KEEP + Ctxn2 NO Spont_1 chr2 143639201 143639201 A C exonic Pcsk2 nonsynonymous SNV NM_008792:c.A1568C:p.N523T exonic Pcsk2 nonsynonymous SNV uc008mqf.2:c.A1568C:p.N523T exonic ENSMUSG00000027419 nonsynonymous SNV ENSMUST00000028905:c.A1568C:p.N523T 2qG1 NA NA chr2 143639201 TCAxCAT A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 60 0 0 11.06957 0.185185 0.02 -0.236765 22 5 612 143 60 60 0 0 AA 8.721831 29 0 790 0 KEEP + Pcsk2 NO Spont_1 chr2 153973807 153973807 A G exonic Bpifa1 nonsynonymous SNV NM_011126:c.A818G:p.Q273R exonic Plunc nonsynonymous SNV uc008niu.2:c.A818G:p.Q273R exonic ENSMUSG00000027483 nonsynonymous SNV ENSMUST00000028985:c.A818G:p.Q273R 2qH1 NA NA chr2 153973807 TACxGTT A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 172 2 0 16.941946 0.113924 0.02 1.100951 70 9 1976 248 60 60 0 0 AA 17.133298 57 0 1578 0 KEEP + Bpifa1 NO Spont_1 chr2 172074867 172074867 G A exonic Mc3r nonsynonymous SNV NM_008561:c.G508A:p.V170I exonic Mc3r nonsynonymous SNV uc008ocl.1:c.G508A:p.V170I exonic ENSMUSG00000038537 nonsynonymous SNV ENSMUST00000038532:c.G508A:p.V170I 2qH3 NA NA chr2 172074867 TGGxTCT G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 182 3 0 128.342385 0.602564 0.02 1.011258 31 47 878 1287 60 60 0 0 GG 24.060873 80 0 2197 0 KEEP + Mc3r NO Spont_1 chr2 173397958 173397958 G A UTR3 Ankrd60 NA NA UTR3 Ankrd60 NA NA intronic ENSMUSG00000027517 NA NA 2qH4 NA NA chr2 173397958 CTCxCCC G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 65 0 0 13.667013 0.272727 0.02 -0.201545 16 6 403 164 60 60 0 0 GG 8.408888 28 0 664 0 KEEP - Ankrd60 NO Spont_1 chr2 17948451 17948451 C A ncRNA_exonic A930004D18Rik NA NA UTR3 A930004D18Rik NA NA UTR3 ENSMUSG00000054057 NA NA 2qA3 NA NA chr2 17948451 CCGxTCC C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322772 0.322807 0.999892 47 0 0 24.173235 0.5 0.02 -0.157851 9 9 258 253 60 60 0 0 CC 6.917485 23 0 632 0 KEEP - A930004D18Rik NO Spont_1 chr2 179710104 179710104 G T intronic Taf4a NA NA intronic Taf4a NA NA intronic ENSMUSG00000039117 NA NA 2qH4 NA NA chr2 179710104 CGCxCGC G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 45 0 0 13.154376 0.3 0.02 -0.175155 14 6 356 156 60 60 0 0 GG 5.109105 17 0 437 0 KEEP - Taf4a NO Spont_1 chr2 18314023 18314023 C A exonic Dnajc1 synonymous SNV NM_001190817:c.G105T:p.L35L exonic "Dnajc1,MTJ1" synonymous SNV uc008ilt.2:c.G105T:p.L35L exonic ENSMUSG00000026740 synonymous SNV ENSMUST00000028072:c.G105T:p.L35L 2qA3 NA NA chr2 18314023 TGCxAGC C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 45 0 0 37.152773 0.619048 0.02 -0.183974 8 13 219 370 60 60 0 0 CC 4.813113 16 0 455 0 KEEP - Dnajc1 NO Spont_1 chr2 29869032 29869032 G C exonic Sptan1 nonsynonymous SNV NM_001076554:c.G4498C:p.G1500R exonic Spna2 nonsynonymous SNV uc008jat.1:c.G1303C:p.G435R exonic ENSMUSG00000057738 nonsynonymous SNV ENSMUST00000046257:c.G4498C:p.G1500R 2qB NA NA chr2 29869032 AAGxGAG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 181 0 0 12.958207 0.097561 0.02 1.074457 74 8 2148 205 60 60 0 0 GG 21.354956 71 0 1978 0 KEEP + Sptan1 YES Spont_1 chr2 49801634 49801634 C A exonic Lypd6b synonymous SNV NM_027990:c.C306A:p.T102T exonic Lypd6b synonymous SNV uc012bvf.1:c.C249A:p.T83T exonic ENSMUSG00000026765 synonymous SNV ENSMUST00000028103:c.C306A:p.T102T 2qC1.1 NA NA chr2 49801634 CACxAGC C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 161 0 0 31.572199 0.212121 0.02 1.214687 52 14 1539 397 60 60 0 0 CC 18.587964 62 0 1728 0 KEEP + Lypd6b NO Spont_1 chr2 52032397 52032397 C A exonic Neb nonsynonymous SNV NM_010889:c.G18300T:p.E6100D exonic Neb nonsynonymous SNV uc008jqv.1:c.G18300T:p.E6100D exonic ENSMUSG00000026950 nonsynonymous SNV ENSMUST00000028320:c.G6255T:p.E2085D 2qC1.1 NA NA chr2 52032397 TTTxTCT C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 383 2 0 30.747814 0.102857 0.02 2.956699 157 18 4637 473 60 60 0 0 CC 42.701828 142 0 4063 0 KEEP - Neb NO Spont_1 chr2 52579998 52579998 T G exonic Stam2 nonsynonymous SNV NM_019667:c.A45C:p.K15N exonic Stam2 nonsynonymous SNV uc008jre.1:c.A45C:p.K15N exonic ENSMUSG00000055371 nonsynonymous SNV ENSMUST00000102759:c.A45C:p.K15N 2qC1.1 NA NA chr2 52579998 GGCxTTT T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 176 0 0 10.308829 0.083333 0.02 1.06385 66 6 1887 164 60 60 0 0 TT 24.361994 81 0 2259 0 KEEP - Stam2 NO Spont_1 chr2 76593576 76593576 A C exonic Ttn nonsynonymous SNV NM_028004:c.T40886G:p.I13629S exonic Ttn nonsynonymous SNV uc008kfo.1:c.T40886G:p.I13629S exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.T40886G:p.I13629S 2qC3 NA NA chr2 76593576 ACAxTTG A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 232 1 0 21.926282 0.114583 0.02 1.051411 85 11 2370 315 60 60 0 0 AA 29.775591 99 0 2721 0 KEEP - Ttn NO Spont_1 chr3 100729390 100729390 T G exonic Trim45 nonsynonymous SNV NM_001165952:c.T1015G:p.S339A exonic Trim45 nonsynonymous SNV uc008qqy.2:c.T1015G:p.S339A exonic ENSMUSG00000033233 nonsynonymous SNV ENSMUST00000037409:c.T1015G:p.S339A 3qF2.2 NA NA chr3 100729390 GGCxCGG T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 50 0 0 14.640362 0.315789 0.02 -0.165561 13 6 326 169 60 60 0 0 TT 7.218523 24 0 665 0 KEEP + Trim45 NO Spont_1 chr3 100732068 100732068 C G exonic Trim45 synonymous SNV NM_001165952:c.C1443G:p.V481V exonic Trim45 synonymous SNV uc008qqy.2:c.C1443G:p.V481V exonic ENSMUSG00000033233 synonymous SNV ENSMUST00000037409:c.C1443G:p.V481V 3qF2.2 NA NA chr3 100732068 GGTxTGC C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 206 0 0 13.504175 0.107692 0.02 1.205899 58 7 1727 198 60 60 0 0 CC 29.47633 98 0 2779 0 KEEP + Trim45 YES Spont_1 chr3 106191636 106191636 C T exonic BC051070 synonymous SNV NM_178412:c.G1200A:p.L400L exonic BC051070 synonymous SNV uc008qvy.1:c.G1200A:p.L400L exonic ENSMUSG00000027902 synonymous SNV ENSMUST00000029510:c.G1200A:p.L400L 3qF2.3 NA NA chr3 106191636 CTTxAAG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 64 0 0 20.199044 0.421053 0.02 -0.166612 11 8 316 220 60 60 0 0 CC 9.626672 32 0 920 0 KEEP - BC051070 NO Spont_1 chr3 129577836 129577836 C T intronic Cfi NA NA intronic Cfi NA NA intronic ENSMUSG00000058952 NA NA 3qG3 NA NA chr3 129577836 TCTxAGG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291975 0.292001 0.999909 52 0 0 24.686986 0.529412 0.02 -0.149087 8 9 233 255 60 60 0 0 CC 7.220148 24 0 693 0 KEEP + Cfi NO Spont_1 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.69366 0.693668 0.999988 64 1 0 18.806724 0.296296 0.02 -0.262339 19 8 507 221 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO Spont_1 chr3 52417194 52417194 C A intergenic "Foxo1(dist=263163),Gm2447(dist=126452)" NA NA intergenic "AK040671(dist=63053),AK040707(dist=126452)" NA NA exonic ENSMUSG00000070490 nonsynonymous SNV ENSMUST00000076317:c.C438A:p.S146R 3qC "Score=0.990446;Name=No.82971,chr6:83824192" NA chr3 52417194 CAGxAAT C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 690 6 203 14.877323 0.05625 0.02 3.674072 151 9 4353 256 45 37 0 0 CC 102.49269 341 0 9428 0 KEEP NA Foxo1 NO Spont_1 chr3 54500916 54500916 A G exonic Supt20 nonsynonymous SNV NM_019995:c.A83G:p.Y28C exonic Fam48a nonsynonymous SNV uc008pfl.1:c.A83G:p.Y28C exonic ENSMUSG00000027751 nonsynonymous SNV ENSMUST00000029315:c.A83G:p.Y28C 3qC NA NA chr3 54500916 AATxCCT A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 81 2 0 16.765418 0.269231 0.02 -0.227905 19 7 498 200 60 60 0 0 AA 11.419441 38 0 990 0 KEEP + Supt20 NO Spont_1 chr3 55000841 55000841 T G intronic Sohlh2 NA NA intronic Sohlh2 NA NA intronic ENSMUSG00000027794 NA NA 3qC NA NA chr3 55000841 GTTxTAT T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 83 0 0 53.759078 0.642857 0.02 -0.245565 10 18 284 531 60 60 0 0 TT 14.43591 48 0 1325 0 KEEP + Sohlh2 NO Spont_1 chr3 87560667 87560667 C G exonic Pear1 nonsynonymous SNV NM_001032414:c.G916C:p.V306L exonic Pear1 nonsynonymous SNV uc008pst.1:c.G916C:p.V306L exonic ENSMUSG00000028073 nonsynonymous SNV ENSMUST00000174219:c.G25C:p.V9L 3qF1 NA NA chr3 87560667 CCAxGGG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139048 0.139832 0.994391 27 0 0 9.791727 0.333333 0.02 -0.105205 8 4 214 112 60 60 0 0 CC 3.907113 13 0 331 0 KEEP - Pear1 YES Spont_1 chr3 88521315 88521315 G C exonic Rit1 nonsynonymous SNV NM_009069:c.G29C:p.S10T exonic Rit1 nonsynonymous SNV uc008pwh.2:c.G29C:p.S10T exonic ENSMUSG00000028057 nonsynonymous SNV ENSMUST00000029692:c.G29C:p.S10T 3qF1 NA NA chr3 88521315 GTAxCAG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 162 1 0 29.30629 0.224138 0.02 1.285075 45 13 1302 365 60 60 0 0 GG 19.541123 65 0 1832 0 KEEP + Rit1 YES Spont_1 chr3 90045911 90045911 C T exonic Creb3l4 synonymous SNV NM_030080:c.G411A:p.S137S exonic Creb3l4 synonymous SNV uc008qbp.1:c.G246A:p.S82S exonic ENSMUSG00000027938 synonymous SNV ENSMUST00000029547:c.G411A:p.S137S 3qF1 NA NA chr3 90045911 ATGxGAA C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 126 0 0 63.201774 0.5 0.02 -0.420754 24 24 601 662 60 60 0 0 CC 17.720598 59 0 1419 0 KEEP - Creb3l4 NO Spont_1 chr3 93248220 93248220 T C exonic Tchh synonymous SNV NM_001163098:c.T1044C:p.R348R exonic Tchh synonymous SNV uc012cti.1:c.T1044C:p.R348R exonic ENSMUSG00000052415 synonymous SNV ENSMUST00000064257:c.T1044C:p.R348R 3qF2.1 NA NA chr3 93248220 GCGxGAG T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 124 2 0 44.077898 0.473684 0.02 -0.332785 20 18 526 469 60 60 0 0 TT 17.17073 65 1 1739 22 KEEP + Tchh NO Spont_1 chr4 115164054 115164054 T A exonic Cyp4a14 nonsynonymous SNV NM_007822:c.A917T:p.E306V exonic Cyp4a14 nonsynonymous SNV uc008uev.2:c.A917T:p.E306V exonic ENSMUSG00000028715 nonsynonymous SNV ENSMUST00000030487:c.A917T:p.E306V 4qD1 NA NA chr4 115164054 TCCxCAT T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 126 2 0 36.176564 0.326531 0.02 1.150863 33 16 945 420 60 60 0 0 TT 18.638495 62 0 1704 0 KEEP - Cyp4a14 NO Spont_1 chr4 118151580 118151580 C G exonic Tie1 nonsynonymous SNV NM_011587:c.G2093C:p.S698T exonic Tie1 nonsynonymous SNV uc008ukh.1:c.G2093C:p.S698T exonic ENSMUSG00000033191 nonsynonymous SNV ENSMUST00000047421:c.G2093C:p.S698T 4qD2.1 NA NA chr4 118151580 ATGxTTG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 97 0 0 28.879524 0.292683 0.02 -0.358669 29 12 786 339 60 60 0 0 CC 11.430028 38 0 1061 0 KEEP - Tie1 YES Spont_1 chr4 118151581 118151581 T C exonic Tie1 nonsynonymous SNV NM_011587:c.A2092G:p.S698G exonic Tie1 nonsynonymous SNV uc008ukh.1:c.A2092G:p.S698G exonic ENSMUSG00000033191 nonsynonymous SNV ENSMUST00000047421:c.A2092G:p.S698G 4qD2.1 NA NA chr4 118151581 TGCxTGT T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 98 0 0 29.562512 0.292683 0.02 -0.359511 29 12 814 346 60 60 0 0 TT 11.430233 38 0 1063 0 KEEP - Tie1 NO Spont_1 chr4 118426618 118426618 A G exonic Olfr1338 nonsynonymous SNV NM_207152:c.T524C:p.V175A exonic Olfr1338 nonsynonymous SNV uc008uku.1:c.T524C:p.V175A exonic ENSMUSG00000066063 nonsynonymous SNV ENSMUST00000084315:c.T524C:p.V175A 4qD2.1 "Score=0.910256;Name=No.86361,chr4:118589148" NA chr4 118426618 TCAxCCC A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 317 0 0 8.669464 0.052083 0.02 1.05061 91 5 2519 148 60 60 0 0 AA 46.228794 154 0 4152 0 KEEP - Olfr1338 NO Spont_1 chr4 132815340 132815340 G C exonic Sytl1 nonsynonymous SNV NM_031393:c.C203G:p.A68G exonic Sytl1 nonsynonymous SNV uc008vco.2:c.C203G:p.A68G exonic ENSMUSG00000028860 nonsynonymous SNV ENSMUST00000030674:c.C203G:p.A68G 4qD2.3 NA NA chr4 132815340 GAGxCCC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139826 0.139832 0.999957 45 0 0 7.232908 0.272727 0.02 -0.096448 8 3 221 86 60 60 0 0 GG 7.81817 26 0 705 0 KEEP - Sytl1 YES Spont_1 chr4 143383764 143383764 T C exonic Gm13023 nonsynonymous SNV NM_001007077:c.T674C:p.L225P exonic Gm13023 nonsynonymous SNV uc008vql.2:c.T674C:p.L225P exonic ENSMUSG00000066031 nonsynonymous SNV ENSMUST00000149739:c.T182C:p.L61P 4qE1 "Score=0.9472;Name=No.29511,chr12:89184682" NA chr4 143383764 AGCxTAT T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 216 0 0 9.607795 0.069444 0.02 1.260741 67 5 1930 151 60 55 0 0 TT 36.392076 121 0 3353 0 KEEP + Gm13023 NO Spont_1 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 42 0 0 11.922148 0.357143 0.02 -0.122767 9 5 257 135 60 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 NO Spont_1 chr4 145489259 145489259 G C intergenic "Gm13238(dist=61364),1700095A21Rik(dist=161907)" NA NA exonic Gm13051 nonsynonymous SNV uc008vsa.1:c.G585C:p.Q195H exonic ENSMUSG00000078500 nonsynonymous SNV ENSMUST00000123460:c.G585C:p.Q195H 4qE1 "Score=0.986863;Name=No.86634,chr4:146677141" NA chr4 145489259 CCAxAGA G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987941 0.987943 0.999997 183 0 68 20.055876 0.152542 0.02 1.37473 50 9 1461 267 60 37 0 0 GG 17.147532 57 0 1638 0 KEEP + Gm13238 YES Spont_1 chr4 62208274 62208274 T G intronic 4933430I17Rik NA NA intronic 4933430I17Rik NA NA intronic ENSMUSG00000058046 NA NA 4qB3 NA NA chr4 62208274 TTCxTCT T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490492 0.490544 0.999892 58 0 0 6.99829 0.173913 0.02 -0.201681 19 4 554 97 60 60 0 0 TT 6.918892 23 0 655 0 KEEP + 4933430I17Rik NO Spont_1 chr5 109792943 109792943 A C exonic Vmn2r16 nonsynonymous SNV NM_001104627:c.A1996C:p.T666P exonic Vmn2r16 nonsynonymous SNV uc009vdn.1:c.A1996C:p.T666P exonic ENSMUSG00000092080 nonsynonymous SNV ENSMUST00000165180:c.A1996C:p.T666P 5qF NA NA chr5 109792943 TCTxCAG A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 857 126 4 176.247241 0.222892 0.02 10.150703 258 74 6904 2174 60 60 0 0 AA 111.480357 371 0 9808 0 KEEP + Vmn2r16 NO Spont_1 chr5 110435911 110435911 C T intronic Zfp932 NA NA intronic Zfp932 NA NA UTR5 ENSMUSG00000066613 NA NA 5qF "Score=0.966644;Name=No.90978,chr5:110337642" NA chr5 110435911 TTAxAGT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 210 3 2 9.275605 0.058824 0.02 2.291442 96 6 2731 163 60 60 0 0 CC 25.863615 86 0 2339 0 KEEP + Zfp932 NO Spont_1 chr5 113121494 113121494 G T exonic Myo18b synonymous SNV NM_028901:c.C7452A:p.L2484L exonic Myo18b synonymous SNV uc008ytr.2:c.C7452A:p.L2484L exonic ENSMUSG00000072720 synonymous SNV ENSMUST00000086617:c.C7452A:p.L2484L 5qF NA NA chr5 113121494 CGGxAGG G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 122 0 0 24.44483 0.235294 0.02 1.150154 39 12 1139 308 60 60 0 0 GG 13.529007 45 0 1257 0 KEEP - Myo18b NO Spont_1 chr5 124444792 124444792 C T exonic Hip1r nonsynonymous SNV NM_145070:c.C643T:p.P215S exonic Hip1r nonsynonymous SNV uc008zos.2:c.C643T:p.P215S exonic ENSMUSG00000000915 nonsynonymous SNV ENSMUST00000000939:c.C643T:p.P215S 5qF NA NA chr5 124444792 GCGxCGC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 117 0 0 18.617378 0.204545 0.02 -0.38583 35 9 994 240 60 60 0 0 CC 14.134456 47 0 1294 0 KEEP + Hip1r NO Spont_1 chr5 134998738 134998738 G C exonic Clip2 nonsynonymous SNV NM_001039162:c.C399G:p.C133W exonic Clip2 nonsynonymous SNV uc008zwi.1:c.C399G:p.C133W exonic ENSMUSG00000063146 nonsynonymous SNV ENSMUST00000036999:c.C399G:p.C133W 5qG2 NA NA chr5 134998738 CGGxCAC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 138 2 0 38.947478 0.265625 0.02 1.307463 47 17 1305 469 60 60 0 0 GG 14.917295 52 1 1384 6 KEEP - Clip2 YES Spont_1 chr5 137737265 137737265 G C exonic Srrt nonsynonymous SNV NM_001109909:c.C2481G:p.N827K exonic Srrt nonsynonymous SNV uc009acb.2:c.C2502G:p.N834K exonic ENSMUSG00000037364 nonsynonymous SNV ENSMUST00000040873:c.C2502G:p.N834K 5qG2 NA NA chr5 137737265 ATAxTTC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 0.999999 72 1 0 8.035474 0.129032 0.02 -0.271864 27 4 776 113 60 60 0 0 GG 10.816505 36 0 998 0 KEEP - Srrt YES Spont_1 chr5 144016481 144016481 G C exonic Zfp316 synonymous SNV NM_017467:c.C1461G:p.G487G exonic Zfp316 synonymous SNV uc009ajw.2:c.C1461G:p.G487G exonic ENSMUSG00000046658 synonymous SNV ENSMUST00000085728:c.C435G:p.G145G 5qG2 NA NA chr5 144016481 CTGxCCG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 81 0 0 24.281864 0.243902 0.02 -0.368313 31 10 881 294 60 60 0 0 GG 8.715031 29 0 778 0 KEEP - Zfp316 YES Spont_1 chr5 14911322 14911322 C A intronic Gm9758 NA NA intronic Gm9758 NA NA intronic ENSMUSG00000033219 NA NA 5qA1 "Score=0.976005;Name=No.90292,chr5:14924346" NA chr5 14911322 GACxGAA C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 909 10 220 69.724488 0.096939 0.02 8.582513 354 38 10010 1057 57 40 0 0 CC 70.928626 236 0 6351 0 KEEP - Gm9758 NO Spont_1 chr5 14938736 14938736 G T upstream Speer4e NA NA ncRNA_intronic Speer8-ps1 NA NA upstream ENSMUSG00000091255 NA NA 5qA1 "Score=0.976972;Name=No.90321,chr5:14974070" NA chr5 14938736 AATxTCT G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999999 0.999998 242 11 16 33.399991 0.130081 0.02 2.490868 107 16 3127 464 60 60 0 0 GG 13.838022 46 0 1317 0 KEEP + Speer4e NO Spont_1 chr5 15030188 15030188 C G exonic Gm17019 nonsynonymous SNV NM_182957:c.G609C:p.E203D exonic Gm17019 nonsynonymous SNV uc008wmq.2:c.G609C:p.E203D exonic ENSMUSG00000091897 nonsynonymous SNV ENSMUST00000167908:c.G609C:p.E203D 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030188 AGTxTCA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 955 8 342 16.14716 0.033233 0.02 8.874584 320 11 9323 318 60 29 0 0 CC 94.733305 315 0 8902 0 KEEP + Gm17019 YES Spont_1 chr5 15030242 15030242 A G exonic Gm17019 synonymous SNV NM_182957:c.T555C:p.R185R exonic Gm17019 synonymous SNV uc008wmq.2:c.T555C:p.R185R exonic ENSMUSG00000091897 synonymous SNV ENSMUST00000167908:c.T555C:p.R185R 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030242 CAAxCGT A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1651 24 401 55.491028 0.049475 0.02 17.434988 634 33 17713 967 60 36 0 0 AA 178.733243 601 1 16351 18 KEEP + Gm17019 NO Spont_1 chr5 15030267 15030267 G C exonic Gm17019 nonsynonymous SNV NM_182957:c.C530G:p.A177G exonic Gm17019 nonsynonymous SNV uc008wmq.2:c.C530G:p.A177G exonic ENSMUSG00000091897 nonsynonymous SNV ENSMUST00000167908:c.C530G:p.A177G 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030267 TCAxCCT G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1998 31 321 28.745099 0.029294 0.02 18.749451 729 22 21210 610 60 35 0 0 GG 262.166817 874 1 24787 6 KEEP + Gm17019 YES Spont_1 chr5 15124617 15124617 G A upstream Speer4d NA NA ncRNA_intronic "Speer7-ps1,Speer8-ps1" NA NA upstream ENSMUSG00000070933 NA NA 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15124617 GATxAGA G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 245 35 31 18.851762 0.089286 0.02 2.329236 102 10 3017 287 60 52 0 0 GG 21.956404 73 0 2086 0 KEEP + Speer4d NO Spont_1 chr5 15126151 15126151 C A exonic Speer4d nonsynonymous SNV NM_025759:c.C55A:p.Q19K exonic Speer4d nonsynonymous SNV uc008wmr.1:c.C55A:p.Q19K exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000095006:c.C55A:p.Q19K 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15126151 AAGxAGT C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1965 15 599 42.258481 0.044515 0.02 14.623364 601 28 17344 785 57 20 0 0 CC 255.039081 848 0 23803 0 KEEP + Speer4d NO Spont_1 chr5 15128347 15128347 A T exonic Speer4d nonsynonymous SNV NM_025759:c.A401T:p.D134V exonic Speer4d nonsynonymous SNV uc008wmr.1:c.A401T:p.D134V exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000119100:c.A245T:p.D82V 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15128347 CTGxTTG A T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 2000 43 509 48.415496 0.052202 0.02 14.857125 581 32 16000 875 60 43 0 0 AA 281.344767 936 0 25307 0 KEEP + Speer4d NO Spont_1 chr5 23311194 23311194 G A exonic Rint1 nonsynonymous SNV NM_177323:c.G582A:p.M194I exonic Rint1 nonsynonymous SNV uc008wqq.1:c.G582A:p.M194I exonic ENSMUSG00000028999 nonsynonymous SNV ENSMUST00000030852:c.G582A:p.M194I 5qA3 NA NA chr5 23311194 CATxACA G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.69362 0.693668 0.999931 66 0 0 12.745592 0.2 0.02 -0.263116 24 6 727 164 60 60 0 0 GG 7.518345 25 0 713 0 KEEP + Rint1 NO Spont_1 chr5 26402123 26402123 G A intronic Gm21671 NA NA intergenic "Speer4a(dist=36078),Gm10471(dist=6589)" NA NA intergenic "ENSMUSG00000073117(dist=17002),ENSMUSG00000073116(dist=6589)" NA NA 5qB1 "Score=0.958652;Name=No.90497,chr5:26366487" NA chr5 26402123 AGCxGGG G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 430 2 22 52.791629 0.162338 0.02 3.923927 129 25 3496 705 60 60 0 0 GG 70.637566 235 0 6141 0 KEEP NA Gm21671 NO Spont_1 chr5 26430695 26430695 T C exonic 5031410I06Rik nonsynonymous SNV NM_207657:c.A148G:p.R50G exonic 5031410I06Rik nonsynonymous SNV uc008wtf.1:c.A148G:p.R50G exonic ENSMUSG00000051940 nonsynonymous SNV ENSMUST00000063524:c.A148G:p.R50G 5qB1 "Score=0.971388;Name=No.90508,chr5:26432699" NA chr5 26430695 GTCxGTG T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1699 26 342 72.441877 0.094697 0.02 11.823714 478 50 13578 1202 60 36 0 0 TT 222.506099 740 0 20186 0 KEEP - 5031410I06Rik NO Spont_1 chr5 26445097 26445097 G T intronic Gm10220 NA NA intronic Gm10220 NA NA intronic ENSMUSG00000067698 NA NA 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445097 AAAxTAG G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 872 3 233 44.242282 0.110619 0.02 4.461838 201 25 5831 664 57 38 0 0 GG 147.071561 489 0 13858 0 KEEP - Gm10220 NO Spont_1 chr5 26445122 26445122 T A intronic Gm10220 NA NA intronic Gm10220 NA NA intronic ENSMUSG00000067698 NA NA 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445122 GGTxGGC T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1400 10 408 65.930087 0.111446 0.02 7.404268 295 37 8212 986 57 35 0 0 TT 221.974617 741 1 20244 7 KEEP - Gm10220 NO Spont_1 chr5 26445213 26445213 G T exonic Gm10220 nonsynonymous SNV NM_001134299:c.C375A:p.D125E exonic Gm10220 nonsynonymous SNV uc012dto.1:c.C375A:p.D125E exonic ENSMUSG00000067698 nonsynonymous SNV ENSMUST00000088236:c.C375A:p.D125E 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445213 TAAxTCG G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1953 20 302 95.055172 0.081505 0.02 15.328606 586 52 16946 1484 60 35 0 0 GG 251.698028 847 1 23390 28 KEEP - Gm10220 NO Spont_1 chr5 26587837 26587837 G A intronic Gm7361 NA NA intergenic "Gm10220(dist=139872),4930584F24Rik(dist=198773)" NA NA intronic ENSMUSG00000059645 NA NA 5qB1 "Score=0.959962;Name=No.90511,chr5:26434814" NA chr5 26587837 TATxACT G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 522 60 17 21.203926 0.072626 0.02 3.178658 166 13 4849 352 60 60 0 0 GG 77.1173 266 1 7564 27 KEEP NA Gm7361 NO Spont_1 chr5 27823619 27823619 A G exonic Speer4b synonymous SNV NM_028561:c.T682C:p.L228L exonic Speer4b synonymous SNV uc008wtp.2:c.T682C:p.L228L exonic ENSMUSG00000048703 synonymous SNV ENSMUST00000053257:c.T682C:p.L228L 5qB1 "Score=0.952387;Name=No.90487,chr5:26325408" NA chr5 27823619 GCAxGAT A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 543 61 91 50.636105 0.146341 0.02 4.115681 140 24 4002 688 60 33 0 0 AA 73.962839 246 0 6810 0 KEEP + Speer4b NO Spont_1 chr5 31223150 31223150 C G exonic Emilin1 nonsynonymous SNV NM_133918:c.C2879G:p.A960G exonic Emilin1 nonsynonymous SNV uc008wwm.1:c.C2879G:p.A960G exonic ENSMUSG00000029163 nonsynonymous SNV ENSMUST00000031055:c.C2879G:p.A960G 5qB1 NA NA chr5 31223150 TGGxCGA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 167 2 0 9.57525 0.078125 0.02 1.232725 59 5 1656 148 60 60 0 0 CC 21.053503 70 0 1931 0 KEEP + Emilin1 YES Spont_1 chr5 32584070 32584070 T C intronic Plb1 NA NA intronic Plb1 NA NA intronic ENSMUSG00000029134 NA NA 5qB1 NA NA chr5 32584070 CACxTGT T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 141 1 0 9.935482 0.087719 0.02 1.392488 52 5 1479 149 60 60 0 0 TT 17.730905 59 0 1598 0 KEEP + Plb1 NO Spont_1 chr5 36837878 36837878 C G exonic Tbc1d14 nonsynonymous SNV NM_001113364:c.G965C:p.R322P exonic Tbc1d14 nonsynonymous SNV uc008xes.2:c.G965C:p.R322P exonic ENSMUSG00000029192 nonsynonymous SNV ENSMUST00000087550:c.G1535C:p.R512P 5qB3 NA NA chr5 36837878 ATGxGGC C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 55 3 0 19.425349 0.5 0.02 -0.122757 7 7 188 203 60 60 0 0 CC 8.714919 29 0 732 0 KEEP - Tbc1d14 YES Spont_1 chr6 114112152 114112152 T G exonic Slc6a11 synonymous SNV NM_172890:c.T726G:p.T242T exonic Slc6a11 synonymous SNV uc009dhs.1:c.T726G:p.T242T exonic ENSMUSG00000030307 synonymous SNV ENSMUST00000032451:c.T726G:p.T242T 6qE3 NA NA chr6 114112152 TACxAAG T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 217 0 0 47.345183 0.241379 0.02 1.129387 66 21 1791 582 60 60 0 0 TT 30.360304 101 0 2694 0 KEEP + Slc6a11 NO Spont_1 chr6 122778244 122778244 C G exonic Foxj2 nonsynonymous SNV NM_021899:c.C56G:p.T19S exonic Foxj2 nonsynonymous SNV uc012esh.1:c.C56G:p.T19S exonic ENSMUSG00000003154 nonsynonymous SNV ENSMUST00000003238:c.C56G:p.T19S 6qF2 NA NA chr6 122778244 TGAxTCT C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 161 2 0 27.810541 0.171053 0.02 1.127055 63 13 1811 367 60 60 0 0 CC 16.83206 56 0 1532 0 KEEP + Foxj2 YES Spont_1 chr6 137113409 137113409 C G intronic Rerg NA NA intronic Rerg NA NA intronic ENSMUSG00000030222 NA NA 6qG1 NA NA chr6 137113409 AAGxTGT C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 475 4 0 17.16181 0.052356 0.02 3.688313 181 10 5154 294 60 60 0 0 CC 57.325991 193 1 5338 6 KEEP - Rerg YES Spont_1 chr6 30610834 30610834 C T intronic Cep41 NA NA intronic Tsga14 NA NA intronic ENSMUSG00000029790 NA NA 6qA3.3 NA NA chr6 30610834 GAAxGAT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 242 2 0 92.479679 0.372549 0.02 2.487414 64 38 1721 1036 60 60 0 0 CC 28.259172 94 0 2447 0 KEEP - Cep41 NO Spont_1 chr6 41396011 41396011 A G intronic Gm10334 NA NA ncRNA_intronic Z12226 NA NA intronic ENSMUSG00000071517 NA NA 6qB1 "Score=0.964411;Name=No.93602,chr6:41304715" NA chr6 41396011 GAAxGCA A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918131 0.918171 0.999957 90 5 0 10.724374 0.113636 0.02 -0.385887 39 5 1127 151 60 37 0 0 AA 7.820722 26 0 727 0 KEEP + Gm10334 NO Spont_1 chr6 41396015 41396015 C T intronic Gm10334 NA NA ncRNA_intronic Z12226 NA NA intronic ENSMUSG00000071517 NA NA 6qB1 "Score=0.964411;Name=No.93602,chr6:41304715" NA chr6 41396015 GCAxGAA C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899275 0.899314 0.999957 89 4 0 7.083979 0.095238 0.02 -0.367542 38 4 1026 109 60 37 0 0 CC 7.78172 26 0 656 0 KEEP + Gm10334 NO Spont_1 chr6 42905696 42905696 C T exonic Olfr444 synonymous SNV NM_146656:c.C198T:p.A66A exonic Olfr444 synonymous SNV uc009bsd.1:c.C198T:p.A66A exonic ENSMUSG00000073110 synonymous SNV ENSMUST00000095955:c.C198T:p.A66A 6qB2.1 NA NA chr6 42905696 GGCxATT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 422 2 0 53.34322 0.155172 0.02 3.846542 147 27 4296 730 60 60 0 0 CC 47.529533 158 0 4508 0 KEEP + Olfr444 NO Spont_1 chr6 49059006 49059006 A G exonic Igf2bp3 nonsynonymous SNV NM_023670:c.T737C:p.I246T exonic Igf2bp3 nonsynonymous SNV uc009bwi.2:c.T737C:p.I246T exonic ENSMUSG00000029814 nonsynonymous SNV ENSMUST00000031838:c.T737C:p.I246T 6qB2.3 NA NA chr6 49059006 AGGxTAG A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.98953 0.989542 0.999988 104 0 0 26.396483 0.196721 0.02 1.25866 49 12 1338 338 60 60 0 0 AA 8.120388 27 0 737 0 KEEP - Igf2bp3 NO Spont_1 chr6 51417086 51417086 G C intronic Hnrnpa2b1 NA NA intronic Hnrnpa2b1 NA NA intronic ENSMUSG00000004980 NA NA 6qB3 NA NA chr6 51417086 CCGxCAT G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 403 3 0 39.298846 0.106383 0.02 3.732221 168 20 4819 574 60 60 0 0 GG 49.8669 166 0 4567 0 KEEP - Hnrnpa2b1 YES Spont_1 chr6 56089343 56089343 G A intronic Pde1c NA NA intronic Pde1c NA NA intronic ENSMUSG00000004347 NA NA 6qB3 NA NA chr6 56089343 CAAxAGA G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 322 0 0 29.226609 0.112782 0.02 3.850882 118 15 3499 424 70 70 0 0 GG 41.214085 137 0 3940 0 KEEP - Pde1c NO Spont_1 chr7 115246869 115246869 C T exonic Olfr483 synonymous SNV NM_146735:c.C45T:p.F15F exonic Olfr483 synonymous SNV uc009jby.1:c.C45T:p.F15F exonic ENSMUSG00000078118 synonymous SNV ENSMUST00000104917:c.C45T:p.F15F 7qE3 NA NA chr7 115246869 GTTxATT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 302 4 0 79.054113 0.329897 0.02 0.9253 65 32 1906 905 60 60 0 1 CC 45.118664 150 0 4283 0 KEEP + Olfr483 NO Spont_1 chr7 13191841 13191841 T C exonic Vmn2r53 nonsynonymous SNV NM_001104644:c.A53G:p.N18S exonic Vmn2r53 nonsynonymous SNV uc009ved.1:c.A53G:p.N18S exonic ENSMUSG00000091797 nonsynonymous SNV ENSMUST00000170412:c.A53G:p.N18S 7qA1 NA NA chr7 13191841 CTAxTAA T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 116 0 1 19.230073 0.257143 0.02 -0.306722 26 9 729 236 60 60 0 0 TT 18.045471 60 0 1645 0 KEEP - Vmn2r53 NO Spont_1 chr7 13207481 13207481 C A exonic Vmn2r54 nonsynonymous SNV NM_001081449:c.G1346T:p.S449I exonic Vmn2r54 nonsynonymous SNV uc009vee.1:c.G1346T:p.S449I exonic ENSMUSG00000053088 nonsynonymous SNV ENSMUST00000086210:c.G1346T:p.S449I 7qA1 "Score=0.967068;Name=No.98185,chr7:13238135" NA chr7 13207481 CAGxTTT C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019911 0.019982 0.99649 40 0 16 8.352158 0.75 0.02 -0.035072 1 3 30 79 29 36 0 0 CC 7.212375 24 0 669 0 KEEP - Vmn2r54 NO Spont_1 chr7 133906683 133906683 T G exonic Mapk3 nonsynonymous SNV NM_011952:c.T491G:p.L164R exonic Mapk3 nonsynonymous SNV uc009jsn.1:c.T146G:p.L49R exonic ENSMUSG00000063065 nonsynonymous SNV ENSMUST00000091328:c.T146G:p.L49R 7qF3 NA NA chr7 133906683 TGCxGCA T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 132 0 0 11.590201 0.142857 0.02 -0.368279 36 6 1010 162 60 60 0 0 TT 19.249936 64 0 1774 0 KEEP + Mapk3 NO Spont_1 chr7 148628109 148628109 C G exonic Lrdd nonsynonymous SNV NM_022654:c.G665C:p.R222P exonic Lrdd nonsynonymous SNV uc009klc.1:c.G665C:p.R222P exonic ENSMUSG00000025507 nonsynonymous SNV ENSMUST00000106005:c.G665C:p.R222P 7qF5 NA NA chr7 148628109 CTGxGCA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 85 0 0 43.533323 0.444444 0.02 -0.314618 20 16 501 466 60 60 0 0 CC 8.414056 28 0 709 0 KEEP - Lrdd YES Spont_1 chr7 148879340 148879340 A C intronic Muc2 NA NA intronic Muc2 NA NA intronic ENSMUSG00000025515 NA NA 7qF5 NA NA chr7 148879340 GTGxGCC A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 123 0 0 6.321328 0.086957 0.02 -0.412156 42 4 1202 103 70 60 0 0 AA 19.22429 64 0 1762 0 KEEP + Muc2 NO Spont_1 chr7 150685198 150685198 G C UTR3 Slc22a18 NA NA UTR3 Slc22a18 NA NA UTR3 ENSMUSG00000000154 NA NA 7qF5 NA NA chr7 150685198 TTGxCCC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 0.999999 55 0 0 21.711125 0.470588 0.02 -0.149084 9 8 253 230 60 60 0 0 GG 10.794305 36 0 940 0 KEEP + Slc22a18 YES Spont_1 chr7 29572799 29572799 T C exonic Sirt2 synonymous SNV NM_001122766:c.T756C:p.G252G exonic Sirt2 synonymous SNV uc012fgx.1:c.T756C:p.G252G exonic ENSMUSG00000015149 synonymous SNV ENSMUST00000170068:c.T756C:p.G252G 7qA3 NA NA chr7 29572799 GGGxGAC T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 354 3 0 107.581287 0.389381 0.02 2.596364 69 44 1880 1194 60 60 0 0 TT 50.694751 174 1 4499 14 KEEP + Sirt2 NO Spont_1 chr7 29666705 29666705 A C UTR5 Capn12 NA NA UTR5 Capn12 NA NA UTR5 ENSMUSG00000054083 NA NA 7qA3 NA NA chr7 29666705 GTTxAAG A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 112 4 0 31.809969 0.333333 0.02 -0.341609 26 13 696 364 60 60 0 0 AA 15.295076 51 0 1328 0 KEEP + Capn12 NO Spont_1 chr7 53317214 53317214 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53317214 GGGxACA G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 130 0 0 26.26412 0.27907 0.02 1.24849 31 12 880 316 60 70 0 0 GG 18.342384 61 0 1708 0 KEEP + Nomo1 NO Spont_1 chr7 53323993 53323993 C T intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53323993 TCCxTTG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 36 0 0 24.774136 0.5 0.02 -0.157853 9 9 256 259 60 60 0 0 CC 4.813261 16 0 459 0 KEEP + Nomo1 NO Spont_1 chr7 53362372 53362372 T A exonic Abcc8 synonymous SNV NM_011510:c.A4278T:p.S1426S exonic Abcc8 synonymous SNV uc009gyd.1:c.A2253T:p.S751S exonic ENSMUSG00000040136 synonymous SNV ENSMUST00000033123:c.A4278T:p.S1426S 7qB4 NA NA chr7 53362372 GCGxGAA T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 75 4 0 11.681442 0.238095 0.02 -0.236685 16 5 435 143 60 60 0 0 TT 10.225011 34 0 917 0 KEEP - Abcc8 NO Spont_1 chr7 53379241 53379241 T C intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53379241 CAGxCCC T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 75 0 0 37.011157 0.555556 0.02 -0.244647 12 15 332 380 60 60 0 0 TT 10.526153 35 0 953 0 KEEP - Abcc8 NO Spont_1 chr7 53517209 53517209 C A intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53517209 GGCxTGG C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 28 0 0 26.623754 0.818182 0.02 -0.096457 2 9 59 246 60 60 0 0 CC 3.6099 12 0 343 0 KEEP + Otog NO Spont_1 chr7 53521359 53521359 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53521359 AAGxAGG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099658 0.099721 0.999366 35 0 0 7.143168 0.333333 0.02 -0.087691 6 3 175 82 60 60 0 0 CC 5.112895 17 0 479 0 KEEP + Otog NO Spont_1 chr7 53543464 53543464 C T exonic Otog synonymous SNV NM_013624:c.C5226T:p.I1742I exonic Otog synonymous SNV uc009gyk.2:c.C5226T:p.I1742I exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000164538:c.C5226T:p.I1742I 7qB4 NA NA chr7 53543464 CATxGAC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.999859 35 2 0 12.974925 0.5 0.02 -0.08764 5 5 121 136 60 60 0 0 CC 5.407814 18 0 455 0 KEEP + Otog NO Spont_1 chr7 53553863 53553863 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553863 ATGxATC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 57 0 0 16.615303 0.35 0.02 -0.2104 13 7 372 189 60 60 0 0 CC 8.420207 28 0 768 0 KEEP + Otog NO Spont_1 chr7 53553865 53553865 T C intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553865 GCAxCCA T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 58 0 0 14.457646 0.3 0.02 -0.210028 14 6 380 169 60 60 0 0 TT 8.72042 29 0 784 0 KEEP + Otog NO Spont_1 chr7 53553867 53553867 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553867 ATCxACC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 59 0 0 14.857294 0.3 0.02 -0.210279 14 6 403 173 60 60 0 0 CC 9.023407 30 0 837 0 KEEP + Otog NO Spont_1 chr7 53633192 53633192 C G intronic Myod1 NA NA intronic Myod1 NA NA intronic ENSMUSG00000009471 NA NA 7qB4 NA NA chr7 53633192 GTGxGTA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 57 0 0 35.426239 0.590909 0.02 -0.19275 9 13 224 357 60 60 0 0 CC 5.031958 24 1 567 20 KEEP + Myod1 YES Spont_1 chr7 53890970 53890970 A G intronic Sergef NA NA intronic Sergef NA NA intronic ENSMUSG00000030839 NA NA 7qB4 NA NA chr7 53890970 TCAxCAT A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076843 0.077336 0.993634 23 0 0 11.400134 0.5 0.02 -0.078926 4 4 108 119 60 60 0 0 AA 3.607242 12 0 316 0 KEEP - Sergef NO Spont_1 chr7 53954822 53954822 T C exonic Saal1 synonymous SNV NM_030233:c.A954G:p.E318E exonic Saal1 synonymous SNV uc009gyu.2:c.A954G:p.E318E exonic ENSMUSG00000006763 synonymous SNV ENSMUST00000143082:c.A954G:p.E318E 7qB4 NA NA chr7 53954822 CTGxTCC T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 107 0 0 23.800443 0.333333 0.02 -0.305919 20 10 542 273 60 60 0 0 TT 17.444287 58 0 1591 0 KEEP - Saal1 NO Spont_1 chr7 53997787 53997787 G T intronic Saa1 NA NA intronic Saa1 NA NA intronic ENSMUSG00000074115 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:54006945" NA chr7 53997787 GGGxCCT G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 45 0 0 12.022043 0.357143 0.02 -0.122775 9 5 264 136 60 60 0 0 GG 6.918436 23 0 646 0 KEEP - Saa1 NO Spont_1 chr7 54008756 54008756 T A intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008756 TTTxGGG T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 57 0 1 8.36911 0.222222 0.02 -0.184145 14 4 398 106 60 60 0 0 TT 9.023745 30 0 836 0 KEEP + Saa2 NO Spont_1 chr7 54008763 54008763 T C intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008763 TCAxGTT T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 61 0 1 11.481424 0.238095 0.02 -0.210445 16 5 434 141 60 60 0 0 TT 9.006226 30 0 788 0 KEEP + Saa2 NO Spont_1 chr7 54009461 54009461 A C exonic Saa2 synonymous SNV NM_011314:c.A351C:p.G117G exonic Saa2 synonymous SNV uc009gzb.2:c.A351C:p.G117G exonic ENSMUSG00000057465 synonymous SNV ENSMUST00000075982:c.A351C:p.G117G 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54009461 TGGxCTG A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 78 5 0 13.123795 0.384615 0.02 -0.131543 8 5 224 145 60 60 0 0 AA 14.435475 48 0 1309 0 KEEP + Saa2 NO Spont_1 chr7 54028653 54028653 A G intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54028653 AATxCCA A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 117 6 0 53.449042 0.456522 0.02 -0.411931 25 21 652 572 60 70 0 0 AA 16.527518 55 0 1431 0 KEEP - Hps5 NO Spont_1 chr7 54070838 54070838 A G intronic Gtf2h1 NA NA intronic Gtf2h1 NA NA intronic ENSMUSG00000006599 NA NA 7qB4 NA NA chr7 54070838 CTCxGGT A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 89 0 0 19.869272 0.4 0.02 -0.19292 12 8 342 219 60 60 0 0 AA 14.125583 47 0 1302 0 KEEP + Gtf2h1 NO Spont_1 chr7 54104300 54104300 A G intronic Ldha NA NA intronic Ldha NA NA intronic ENSMUSG00000063229 NA NA 7qB4 NA NA chr7 54104300 AGAxTCA A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 38 0 0 18.819791 0.388889 0.02 -0.157733 11 7 289 207 60 60 0 0 AA 5.411271 18 0 474 0 KEEP + Ldha NO Spont_1 chr7 54441140 54441140 A T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.T902A:p.L301Q 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441140 CACxGCT A T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 264 4 2 18.702887 0.10989 0.02 2.524401 81 10 2264 276 60 60 0 0 AA 29.474809 98 0 2697 0 KEEP - Mrgpra6 NO Spont_1 chr7 54441179 54441179 G T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.C863A:p.P288H 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441179 TCAxGTG G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 325 15 4 58.137591 0.184932 0.02 3.550922 119 27 3479 756 60 60 0 0 GG 29.167216 97 0 2750 0 KEEP - Mrgpra6 NO Spont_1 chr7 54441206 54441206 C T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.G836A:p.S279N 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441206 GCAxTCT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 312 15 4 25.789497 0.090323 0.02 3.793367 141 14 4079 395 60 37 0 0 CC 25.567853 85 0 2393 0 KEEP - Mrgpra6 NO Spont_1 chr7 54590424 54590424 T G exonic Mrgpra1 synonymous SNV NM_153095:c.A876C:p.G292G exonic Mrgpra1 synonymous SNV uc009haf.1:c.A876C:p.G292G exonic ENSMUSG00000050650 synonymous SNV ENSMUST00000075495:c.A795C:p.G265G 7qB4 NA NA chr7 54590424 GGAxCCC T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 199 2 0 7.633498 0.066667 0.02 1.314031 56 4 1542 121 60 29 0 0 TT 31.549941 105 0 2834 0 KEEP - Mrgpra1 NO Spont_1 chr7 54681932 54681932 T A exonic Mrgpra2a nonsynonymous SNV NM_001172588:c.A947T:p.E316V exonic Mrgpra2a nonsynonymous SNV uc009hag.2:c.A947T:p.E316V exonic ENSMUSG00000039854 nonsynonymous SNV ENSMUST00000060569:c.A869T:p.E290V 7qB4 "Score=0.992523;Name=No.101347,chr7:54709200" NA chr7 54681932 GTCxCAG T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 216 0 18 24.981902 0.244444 0.02 -0.403398 34 11 972 306 46 46 0 0 TT 39.094587 130 0 3632 0 KEEP - Mrgpra2a NO Spont_1 chr7 54845102 54845102 G A exonic Mrgpra3 nonsynonymous SNV NM_153067:c.C445T:p.R149C exonic Mrgpra3 nonsynonymous SNV uc009haj.2:c.C445T:p.R149C exonic ENSMUSG00000078698 nonsynonymous SNV ENSMUST00000046797:c.C364T:p.R122C 7qB4 "Score=0.935045;Name=No.101352,chr7:54805085" NA chr7 54845102 GGCxGCA G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 134 4 6 10.525161 0.147059 0.02 1.2394 29 5 737 143 60 37 0 0 GG 19.835636 66 0 1688 0 KEEP - Mrgpra3 NO Spont_1 chr7 55236551 55236551 A T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.T671A:p.L224H exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.T671A:p.L224H exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.T671A:p.L224H 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236551 AGAxGAA A T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 176 6 1 24.588227 0.173913 0.02 0.747269 57 12 1626 327 60 60 0 0 AA 18.945799 63 0 1739 0 KEEP - Mrgpra4 NO Spont_1 chr7 55236571 55236571 C T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.G651A:p.M217I exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.G651A:p.M217I exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.G651A:p.M217I 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236571 CAGxATG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 206 7 1 12.12717 0.089744 0.02 2.24761 71 7 2038 190 60 37 0 0 CC 22.860117 76 0 2127 0 KEEP - Mrgpra4 NO Spont_1 chr7 55236580 55236580 C G exonic Mrgpra4 synonymous SNV NM_153524:c.G642C:p.V214V exonic Mrgpra4 synonymous SNV uc009hak.1:c.G642C:p.V214V exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G642C:p.V214V 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236580 GGTxACG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 220 9 1 13.611889 0.081395 0.02 2.784604 79 7 2312 208 60 37 0 0 CC 25.568402 85 0 2417 0 KEEP - Mrgpra4 YES Spont_1 chr7 55236601 55236601 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G621A:p.T207T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G621A:p.T207T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G621A:p.T207T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236601 TTTxGTC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 238 11 1 51.289359 0.247191 0.02 2.508773 67 22 1834 624 60 60 0 0 CC 27.652936 92 0 2412 0 KEEP - Mrgpra4 NO Spont_1 chr7 55236643 55236643 G A exonic Mrgpra4 synonymous SNV NM_153524:c.C579T:p.T193T exonic Mrgpra4 synonymous SNV uc009hak.1:c.C579T:p.T193T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.C579T:p.T193T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236643 CAGxGTG G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 275 7 0 36.055166 0.207792 0.02 2.60516 61 16 1751 455 60 60 0 0 GG 34.279803 114 0 3142 0 KEEP - Mrgpra4 NO Spont_1 chr7 55236661 55236661 T C exonic Mrgpra4 nonsynonymous SNV NM_153524:c.A561G:p.I187M exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.A561G:p.I187M exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.A561G:p.I187M 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236661 GACxATA T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 284 5 0 13.986372 0.111111 0.02 2.712707 64 8 1773 210 60 60 0 0 TT 36.065064 120 0 3247 0 KEEP - Mrgpra4 NO Spont_1 chr7 55236700 55236700 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G522A:p.T174T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G522A:p.T174T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G522A:p.T174T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236700 GTTxGTT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 247 0 0 83.529518 0.492063 0.02 2.728872 32 31 840 877 60 60 0 0 CC 33.35385 111 0 2837 0 KEEP - Mrgpra4 NO Spont_1 chr7 55277022 55277022 T C exonic Mrgprx1 nonsynonymous SNV NM_207540:c.A346G:p.I116V exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.A346G:p.I116V exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.A346G:p.I116V 7qB4 NA NA chr7 55277022 GGAxGCT T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 61 0 0 16.833728 0.380952 0.02 -0.192562 13 8 360 191 60 60 0 0 TT 8.025024 29 1 785 6 KEEP - Mrgprx1 NO Spont_1 chr7 55277271 55277271 C T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.G97A:p.V33I exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.G97A:p.V33I exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.G97A:p.V33I 7qB4 NA NA chr7 55277271 GGAxCAG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162445 0.162467 0.999863 37 0 0 12.423171 0.384615 0.02 -0.114001 8 5 229 138 60 60 0 0 CC 6.015807 20 0 559 0 KEEP - Mrgprx1 NO Spont_1 chr7 55277275 55277275 G T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.C93A:p.F31L exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.C93A:p.F31L exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.C93A:p.F31L 7qB4 NA NA chr7 55277275 CAGxAAG G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196286 0.196312 0.999869 38 0 0 14.608286 0.428571 0.02 -0.122766 8 6 234 159 60 60 0 0 GG 6.316971 21 0 593 0 KEEP - Mrgprx1 NO Spont_1 chr7 55424203 55424203 G C exonic Mrgprb5 synonymous SNV NM_207538:c.C153G:p.V51V exonic Mrgprb5 synonymous SNV uc009ham.1:c.C153G:p.V51V exonic ENSMUSG00000070551 synonymous SNV ENSMUST00000094389:c.C153G:p.V51V 7qB4 NA NA chr7 55424203 TAGxACT G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 32 2 0 13.023439 0.384615 0.02 -0.122783 8 5 234 144 60 60 0 0 GG 4.512228 15 0 425 0 KEEP - Mrgprb5 YES Spont_1 chr7 55454369 55454369 C T exonic Mrgprb4 synonymous SNV NM_205795:c.G180A:p.R60R exonic Mrgprb4 synonymous SNV uc009han.1:c.G180A:p.R60R exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.G180A:p.R60R 7qB4 NA NA chr7 55454369 ATTxCTA C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835658 0.835716 0.999931 70 3 0 25.846518 0.357143 0.02 -0.324452 18 10 510 290 60 60 0 0 CC 7.512868 25 0 693 0 KEEP - Mrgprb4 NO Spont_1 chr7 55644240 55644240 C T exonic Mrgprb8 synonymous SNV NM_207539:c.C288T:p.I96I exonic Mrgprb8 synonymous SNV uc009hao.2:c.C288T:p.I96I exonic ENSMUSG00000050870 synonymous SNV ENSMUST00000056676:c.C288T:p.I96I 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644240 CATxGAC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 169 3 0 89.67921 0.507692 0.02 1.214844 32 33 864 935 60 60 0 0 CC 19.462916 74 1 1902 26 KEEP + Mrgprb8 NO Spont_1 chr7 55644712 55644712 C T exonic Mrgprb8 nonsynonymous SNV NM_207539:c.C760T:p.P254S exonic Mrgprb8 nonsynonymous SNV uc009hao.2:c.C760T:p.P254S exonic ENSMUSG00000050870 nonsynonymous SNV ENSMUST00000056676:c.C760T:p.P254S 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644712 ATGxCTT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 70 0 0 43.566911 0.551724 0.02 -0.254302 13 16 369 446 60 60 0 0 CC 7.519446 25 0 691 0 KEEP + Mrgprb8 NO Spont_1 chr7 55702613 55702613 T C exonic Mrgprb1 nonsynonymous SNV NM_205810:c.A920G:p.K307R exonic Mrgprb1 nonsynonymous SNV uc009hap.1:c.A920G:p.K307R exonic ENSMUSG00000070547 nonsynonymous SNV ENSMUST00000094384:c.A920G:p.K307R 7qB4 NA NA chr7 55702613 AGCxTGA T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 104 0 0 38.575973 0.466667 0.02 -0.263099 16 14 457 409 60 60 0 0 TT 19.550963 65 0 1806 0 KEEP - Mrgprb1 NO Spont_1 chr7 56133457 56133457 T A exonic E2f8 synonymous SNV NM_001013368:c.A306T:p.S102S exonic E2f8 synonymous SNV uc009haz.2:c.A306T:p.S102S exonic ENSMUSG00000046179 synonymous SNV ENSMUST00000058745:c.A306T:p.S102S 7qB4 NA NA chr7 56133457 TCCxGAT T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 132 0 0 46.673774 0.5 0.02 -0.298153 17 17 473 488 60 60 0 0 TT 23.149536 77 0 2102 0 KEEP - E2f8 NO Spont_1 chr7 57484324 57484324 T G intronic Nell1 NA NA intronic Nell1 NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57484324 GTCxGCT T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077329 0.077336 0.999909 37 1 0 28.484539 1 0.02 -0.0789 0 9 0 242 0 60 0 0 TT 7.217961 24 0 656 0 KEEP + Nell1 NO Spont_1 chr7 57855795 57855795 G A UTR3 4933405O20Rik NA NA UTR3 4933405O20Rik NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57855795 AGAxAGT G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119669 0.120436 0.993634 27 0 0 36.34092 1 0.02 -0.096463 0 11 0 311 0 60 0 0 GG 3.609479 12 0 337 0 KEEP + 4933405O20Rik NO Spont_1 chr7 59116908 59116908 G A exonic Fancf synonymous SNV NM_001115087:c.C717T:p.A239A exonic Fancf synonymous SNV uc012flg.1:c.C717T:p.A239A exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.C717T:p.A239A 7qB5 NA NA chr7 59116908 CTTxGCT G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 105 4 0 108.889396 1 0.02 -0.30686 0 34 0 927 0 60 0 0 GG 13.52681 45 0 1245 0 KEEP - Fancf NO Spont_1 chr7 59117508 59117508 A G exonic Fancf synonymous SNV NM_001115087:c.T117C:p.R39R exonic Fancf synonymous SNV uc012flg.1:c.T117C:p.R39R exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.T117C:p.R39R 7qB5 NA NA chr7 59117508 ATAxCGC A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 83 0 0 97.216503 1 0.02 -0.254307 0 29 0 834 0 60 0 0 AA 11.67874 43 1 1166 11 KEEP - Fancf NO Spont_1 chr7 59117648 59117648 C T upstream Fancf NA NA UTR5 Gas2 NA NA UTR5 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59117648 CATxCCG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 62 0 0 70.275864 1 0.02 -0.215742 0 22 0 598 0 60 0 0 CC 11.067771 37 0 1022 0 KEEP + Fancf NO Spont_1 chr7 59220735 59220735 G A intronic Gas2 NA NA UTR3 Gas2 NA NA UTR3 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59220735 TGAxCCT G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 0.999998 58 0 0 41.291103 1 0.02 -0.140285 0 13 0 351 0 70 0 0 GG 10.223343 34 0 926 0 KEEP + Gas2 NO Spont_1 chr7 63027927 63027927 C G exonic Siglech nonsynonymous SNV NM_178706:c.C913G:p.H305D exonic Siglech nonsynonymous SNV uc009hdb.2:c.C865G:p.H289D exonic ENSMUSG00000051504 nonsynonymous SNV ENSMUST00000094360:c.C865G:p.H289D 7qB5 NA NA chr7 63027927 GCAxACG C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077326 0.077336 0.999879 40 0 0 27.513127 1 0.02 -0.078936 0 8 0 237 0 60 0 0 CC 6.617305 22 0 614 0 KEEP + Siglech YES Spont_1 chr7 63068956 63068956 A T intronic Tubgcp5 NA NA intronic Tubgcp5 NA NA intronic ENSMUSG00000033790 NA NA 7qB5 NA NA chr7 63068956 TGCxGGC A T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 92 2 0 82.611736 1 0.02 -0.228006 0 25 0 707 0 60 0 0 AA 14.738777 49 0 1371 0 KEEP + Tubgcp5 NO Spont_1 chr7 63147515 63147515 G C intronic Cyfip1 NA NA exonic Cyfip1 nonsynonymous SNV uc009hdj.1:c.G1267C:p.G423R exonic ENSMUSG00000030447 nonsynonymous SNV ENSMUST00000168271:c.G1267C:p.G423R 7qB5 NA NA chr7 63147515 ATCxGAG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 0.999999 71 3 0 53.720981 0.95 0.02 -0.209424 1 19 8 461 60 60 0 0 GG 10.824513 36 0 965 0 KEEP + Cyfip1 YES Spont_1 chr7 63148642 63148642 C T intronic Cyfip1 NA NA intronic Cyfip1 NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63148642 CTCxCTG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138789 0.139832 0.99254 28 2 0 40.518861 1 0.02 -0.105242 0 12 0 348 0 60 0 0 CC 2.70719 9 0 252 0 KEEP + Cyfip1 NO Spont_1 chr7 63181924 63181924 G A intronic Cyfip1 NA NA intronic "Cyfip1,Shyc" NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63181924 GGGxGGG G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387354 0.387407 0.999863 50 1 0 60.546306 1 0.02 -0.175345 0 19 0 515 0 70 0 0 GG 6.015121 20 0 549 0 KEEP + Cyfip1 NO Spont_1 chr7 63327733 63327733 A G exonic Herc2 synonymous SNV NM_010418:c.A258G:p.E86E exonic "Herc2,rjs" synonymous SNV uc009hdw.1:c.A258G:p.E86E exonic ENSMUSG00000030451 synonymous SNV ENSMUST00000041015:c.A144G:p.E48E 7qB5 NA NA chr7 63327733 AGAxGAG A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353943 0.353947 0.999988 59 0 0 64.955676 1 0.02 -0.166639 0 19 0 559 0 60 0 0 AA 8.121873 27 0 763 0 KEEP + Herc2 NO Spont_1 chr7 63440089 63440089 T C intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440089 TGGxTGT T C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322764 0.322807 0.999869 43 0 0 60.577652 1 0.02 -0.157859 0 18 0 520 0 60 0 0 TT 6.315743 21 0 572 0 KEEP + Herc2 NO Spont_1 chr7 63440091 63440091 G A intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440091 GTTxTGA G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353898 0.353947 0.999863 43 0 0 59.647098 1 0.02 -0.166581 0 19 0 506 0 60 0 0 GG 6.015478 20 0 556 0 KEEP + Herc2 NO Spont_1 chr7 63585644 63585644 G A intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63585644 ATTxAGC G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139743 0.139832 0.999366 32 0 0 36.341182 1 0.02 -0.105234 0 11 0 311 0 60 0 0 GG 5.113871 17 0 485 0 KEEP + Oca2 NO Spont_1 chr7 63612621 63612621 C T intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63612621 TTAxTCG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 59 2 0 52.82316 1 0.02 -0.157849 0 16 0 452 0 60 0 0 CC 7.520355 25 0 710 0 KEEP + Oca2 NO Spont_1 chr7 64677117 64677117 G A exonic Gabra5 synonymous SNV NM_176942:c.C720T:p.S240S exonic Gabra5 synonymous SNV uc009heb.1:c.C720T:p.S240S exonic ENSMUSG00000055078 synonymous SNV ENSMUST00000068456:c.C720T:p.S240S 7qC NA NA chr7 64677117 TGTxCTG G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 48 0 0 50.418777 1 0.02 -0.14028 0 16 0 428 0 60 0 0 GG 6.919216 23 0 662 0 KEEP - Gabra5 NO Spont_1 chr7 64708281 64708281 C T intronic Gabra5 NA NA intronic Gabra5 NA NA intronic ENSMUSG00000055078 NA NA 7qC NA NA chr7 64708281 ACAxGCC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099709 0.099721 0.999879 34 3 0 25.309701 1 0.02 -0.087679 0 8 0 215 0 60 0 0 CC 6.614702 22 0 581 0 KEEP - Gabra5 NO Spont_1 chr8 105197937 105197937 T A exonic Cdh11 nonsynonymous SNV NM_009866:c.A298T:p.I100F exonic Cdh11 nonsynonymous SNV uc009mzu.1:c.A298T:p.I100F exonic ENSMUSG00000031673 nonsynonymous SNV ENSMUST00000075190:c.A298T:p.I100F 8qD2 "Score=0.936759;Name=No.103939,chr8:19990962" NA chr8 105197937 AAAxGGT T A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 167 5 7 20.182584 0.138889 0.02 1.063859 62 10 1730 280 60 20 0 0 TT 18.345633 61 0 1658 0 KEEP - Cdh11 NO Spont_1 chr8 108657797 108657797 G T intronic Esrp2 NA NA intronic Esrp2 NA NA intronic ENSMUSG00000084128 NA NA 8qD3 NA NA chr8 108657797 GGGxGGC G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 245 2 0 42.304715 0.181818 0.02 2.425928 90 20 2585 554 60 60 0 0 GG 29.47465 98 0 2709 0 KEEP - Esrp2 NO Spont_1 chr8 108822491 108822491 A G intronic Smpd3 NA NA ncRNA_intronic AK015712 NA NA ncRNA_exonic ENSMUSG00000074113 NA NA 8qD3 NA NA chr8 108822491 AGGxGTT A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 193 0 0 15.434318 0.091954 0.02 1.031883 79 8 2202 232 60 60 0 0 AA 27.973301 93 0 2592 0 KEEP + Smpd3 NO Spont_1 chr8 109185860 109185860 G A exonic Cdh1 synonymous SNV NM_009864:c.G1647A:p.E549E exonic Cdh1 synonymous SNV uc009ngi.1:c.G1647A:p.E549E exonic ENSMUSG00000000303 synonymous SNV ENSMUST00000000312:c.G1647A:p.E549E 8qD3 NA NA chr8 109185860 TGAxATG G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999998 84 4 0 17.925203 0.205128 0.02 -0.342043 31 8 915 227 60 60 0 0 GG 10.22379 34 0 963 0 KEEP + Cdh1 NO Spont_1 chr8 122465451 122465451 A C exonic Usp10 nonsynonymous SNV NM_009462:c.A590C:p.D197A exonic Usp10 nonsynonymous SNV uc009nqn.1:c.A590C:p.D197A exonic ENSMUSG00000031826 nonsynonymous SNV ENSMUST00000108988:c.A587C:p.D196A 8qE1 NA NA chr8 122465451 TGGxCGT A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999997 95 0 0 15.247978 0.162791 0.02 -0.377056 36 7 994 202 60 60 0 0 AA 9.321734 31 0 832 0 KEEP + Usp10 NO Spont_1 chr8 124858394 124858394 G C exonic Zfpm1 nonsynonymous SNV NM_009569:c.G797C:p.S266T exonic Zfpm1 nonsynonymous SNV uc009nsj.1:c.G797C:p.S266T exonic ENSMUSG00000049577 nonsynonymous SNV ENSMUST00000054052:c.G797C:p.S266T 8qE1 NA NA chr8 124858394 GTAxTGA G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 162 0 0 23.312148 0.144737 0.02 1.217201 65 11 1885 317 60 60 0 0 GG 18.348116 61 0 1709 0 KEEP + Zfpm1 YES Spont_1 chr8 127384933 127384933 C A exonic 2810004N23Rik nonsynonymous SNV NM_025615:c.G327T:p.K109N exonic 2810004N23Rik nonsynonymous SNV uc009nxs.2:c.G327T:p.K109N exonic ENSMUSG00000031984 nonsynonymous SNV ENSMUST00000034465:c.G327T:p.K109N 8qE2 NA NA chr8 127384933 GTTxTTT C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 204 0 0 35.856336 0.217949 0.02 1.011171 61 17 1811 455 60 60 0 0 CC 25.571024 85 0 2446 0 KEEP - 2810004N23Rik NO Spont_1 chr8 20020279 20020279 G T ncRNA_exonic 2610005L07Rik NA NA UTR5 Gm10348 NA NA ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020279 TTTxCCC G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 676 9 145 18.846793 0.056604 0.02 4.621432 200 12 5806 331 60 60 0 1 GG 87.495497 291 0 8138 0 KEEP - 2610005L07Rik NO Spont_1 chr8 20020448 20020448 G T upstream "2610005L07Rik,6820431F20Rik" NA NA upstream Gm10348 NA NA upstream ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020448 CGCxCCC G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 301 0 17 11.90205 0.064815 0.02 2.426082 101 7 2741 198 60 60 0 1 GG 42.394179 141 0 3747 0 KEEP NA 2610005L07Rik NO Spont_1 chr8 67506560 67506560 G T exonic Trim75 nonsynonymous SNV NM_001033429:c.C1136A:p.P379H exonic Trim75 nonsynonymous SNV uc009lvd.1:c.C1136A:p.P379H exonic ENSMUSG00000071089 nonsynonymous SNV ENSMUST00000095295:c.C1136A:p.P379H 8qB3.1 NA NA chr8 67506560 CAGxGGT G T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 111 0 0 13.643067 0.127273 0.02 1.114993 48 7 1399 194 60 60 0 0 GG 11.715255 39 0 1070 0 KEEP - Trim75 NO Spont_1 chr8 97390753 97390753 C T exonic Dok4 nonsynonymous SNV NM_053246:c.G304A:p.E102K exonic Dok4 nonsynonymous SNV uc009mxf.2:c.G304A:p.E102K exonic ENSMUSG00000040631 nonsynonymous SNV ENSMUST00000046461:c.G304A:p.E102K 8qD1 NA NA chr8 97390753 ACTxTTC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 105 0 0 7.692935 0.090909 0.02 -0.403449 40 4 1189 116 60 60 0 0 CC 9.443943 41 1 1147 27 KEEP - Dok4 NO Spont_1 chr8_random 690820 690820 G A intergenic "Tsnax(dist=89305),NONE(dist=NONE)" NA NA intergenic "Tsnax(dist=89305),AK029792(dist=56894)" NA NA downstream ENSMUSG00000074455 NA NA NA "Score=0.989584;Name=No.105235,chr8_random:819725" NA chr8_random 690820 TTAxACT G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1337 6 207 41.480233 0.055556 0.02 11.596573 425 25 12607 714 46 43 0 0 GG 192.514543 640 0 18378 0 KEEP NA Tsnax NO Spont_1 chr9 106100086 106100086 G C exonic Ppm1m nonsynonymous SNV NM_026447:c.C590G:p.A197G exonic Ppm1m nonsynonymous SNV uc009rjd.1:c.C422G:p.A141G exonic ENSMUSG00000020253 nonsynonymous SNV ENSMUST00000020489:c.C122G:p.A41G 9qF1 NA NA chr9 106100086 AAGxCGT G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 367 2 0 75.306033 0.240602 0.02 2.403246 101 32 2872 919 60 60 0 0 GG 45.106753 150 0 4103 0 KEEP - Ppm1m YES Spont_1 chr9 106386206 106386206 G C exonic Rrp9 nonsynonymous SNV NM_145620:c.G965C:p.G322A exonic Rrp9 nonsynonymous SNV uc009rkb.1:c.G965C:p.G322A exonic ENSMUSG00000041506 nonsynonymous SNV ENSMUST00000047721:c.G965C:p.G322A 9qF1 NA NA chr9 106386206 ATGxCCA G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 200 4 1 48.843733 0.283784 0.02 1.145026 53 21 1507 580 60 60 0 0 GG 25.129642 87 1 2420 9 KEEP + Rrp9 YES Spont_1 chr9 107479342 107479342 G C UTR5 Hyal1 NA NA UTR5 Hyal1 NA NA ncRNA_UTR5 ENSMUSG00000010051 NA NA 9qF1 NA NA chr9 107479342 CCGxCCA G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 75 0 0 8.225133 0.142857 0.02 -0.245511 24 4 683 113 60 60 0 0 GG 9.323052 31 0 846 0 KEEP + Hyal1 YES Spont_1 chr9 115869498 115869498 C T exonic Gadl1 synonymous SNV NM_028638:c.C753T:p.C251C exonic Gadl1 synonymous SNV uc009ryr.2:c.C753T:p.C251C exonic ENSMUSG00000056880 synonymous SNV ENSMUST00000121770:c.C753T:p.C251C 9qF3 NA NA chr9 115869498 CTGxGCC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 209 1 0 57.157665 0.320513 0.02 1.012151 53 25 1415 665 60 60 0 0 CC 31.789491 106 0 2696 0 KEEP + Gadl1 NO Spont_1 chr9 119046456 119046456 A G exonic Dlec1 nonsynonymous SNV NM_177117:c.A3374G:p.E1125G exonic Dlec1 nonsynonymous SNV uc009sai.2:c.A3368G:p.E1123G exonic ENSMUSG00000038060 nonsynonymous SNV ENSMUST00000140326:c.A3371G:p.E1124G 9qF3 NA NA chr9 119046456 TGGxGTA A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 162 2 0 43.895476 0.272727 0.02 1.304612 48 18 1372 521 60 60 0 0 AA 19.549998 65 0 1804 0 KEEP + Dlec1 NO Spont_1 chr9 123092618 123092618 C G exonic Cdcp1 synonymous SNV NM_133974:c.G981C:p.R327R exonic Cdcp1 synonymous SNV uc009sfz.1:c.G981C:p.R327R exonic ENSMUSG00000035498 synonymous SNV ENSMUST00000039229:c.G981C:p.R327R 9qF4 NA NA chr9 123092618 AAGxCGA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 113 0 0 13.322657 0.166667 0.02 -0.315621 30 6 836 175 60 60 0 0 CC 16.242685 54 0 1507 0 KEEP - Cdcp1 YES Spont_1 chr9 123573856 123573856 C A intronic Slc6a20a NA NA intronic Slc6a20a NA NA intronic ENSMUSG00000036814 NA NA 9qF4 NA NA chr9 123573856 TTAxCCG C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162452 0.162467 0.999909 42 0 0 6.382297 0.230769 0.02 -0.114006 10 3 293 80 60 60 0 0 CC 7.218401 24 0 663 0 KEEP - Slc6a20a NO Spont_1 chr9 20872361 20872361 T G exonic Fdx1l nonsynonymous SNV NM_001039824:c.A377C:p.D126A exonic Fdx1l nonsynonymous SNV uc009okb.1:c.A377C:p.D126A exonic ENSMUSG00000079677 nonsynonymous SNV ENSMUST00000010348:c.A377C:p.D126A 9qA3 NA NA chr9 20872361 ATGxCGT T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 163 0 0 38.061392 0.271186 0.02 1.374826 43 16 1201 454 60 60 0 0 TT 21.65316 72 0 1966 0 KEEP - Fdx1l NO Spont_1 chr9 39234191 39234191 C G exonic Olfr952 nonsynonymous SNV NM_146503:c.G464C:p.S155T exonic Olfr952 nonsynonymous SNV uc009oxx.1:c.G464C:p.S155T exonic ENSMUSG00000058856 nonsynonymous SNV ENSMUST00000073895:c.G464C:p.S155T 9qA5.1 "Score=0.927082;Name=No.105381,chr9:39273206" NA chr9 39234191 GCAxTGA C G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 138 0 8 35.065155 0.27451 0.02 1.444924 37 14 1049 414 60 60 0 0 CC 19.248817 64 0 1760 0 KEEP - Olfr952 YES Spont_1 chr9 44553646 44553646 C T exonic Arcn1 nonsynonymous SNV NM_145985:c.G1301A:p.R434Q exonic Arcn1 nonsynonymous SNV uc009pei.1:c.G1301A:p.R434Q exonic ENSMUSG00000032096 nonsynonymous SNV ENSMUST00000034607:c.G1301A:p.R434Q 9qA5.2 NA NA chr9 44553646 CTCxGAC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 83 1 0 7.966392 0.117647 0.02 -0.297897 30 4 799 114 60 37 0 0 CC 11.714813 39 0 1023 0 KEEP - Arcn1 NO Spont_1 chr9 45560261 45560261 G A exonic Dscaml1 nonsynonymous SNV NM_001081270:c.G5698A:p.D1900N exonic Dscaml1 nonsynonymous SNV uc009pga.1:c.G3994A:p.D1332N exonic ENSMUSG00000032087 nonsynonymous SNV ENSMUST00000034592:c.G5698A:p.D1900N 9qA5.2 NA NA chr9 45560261 TCAxACC G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.195062 0.196312 0.993634 27 0 0 12.724973 0.357143 0.02 -0.12269 9 5 251 143 60 60 0 0 GG 3.609815 12 0 341 0 KEEP + Dscaml1 NO Spont_1 chr9 78327487 78327487 G C exonic Eef1a1 nonsynonymous SNV NM_010106:c.C716G:p.T239S exonic Eef1a1 nonsynonymous SNV uc009qun.1:c.C716G:p.T239S exonic ENSMUSG00000037742 nonsynonymous SNV ENSMUST00000042235:c.C716G:p.T239S 9qE1 "Score=0.982259;Name=No.80052,chr2:40411235" NA chr9 78327487 CGAxTTG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 96 0 1 10.078525 0.116279 0.02 -0.377113 38 5 1102 144 60 60 0 0 GG 12.617358 42 0 1155 0 KEEP - Eef1a1 YES Spont_1 chr9 85617654 85617654 C A exonic Ibtk nonsynonymous SNV NM_001081282:c.G1426T:p.A476S exonic Ibtk nonsynonymous SNV uc009qwx.2:c.G1426T:p.A476S exonic ENSMUSG00000035941 nonsynonymous SNV ENSMUST00000093806:c.G1123T:p.A375S 9qE3.1 NA NA chr9 85617654 GACxTTT C A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 108 1 0 7.422553 0.097561 0.02 -0.35958 37 4 1083 112 60 60 0 0 CC 13.827662 46 0 1281 0 KEEP - Ibtk NO Spont_1 chrX 121241416 121241416 T G exonic Vmn2r121 nonsynonymous SNV NM_001100616:c.A2515C:p.K839Q exonic Vmn2r121 nonsynonymous SNV uc009vfh.1:c.A874C:p.K292Q exonic ENSMUSG00000072049 nonsynonymous SNV ENSMUST00000096792:c.A2395C:p.K799Q XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121241416 TCTxTAT T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 420 18 21 32.548879 0.102564 0.02 3.922598 140 16 4011 473 60 57 0 0 TT 46.051087 163 1 4535 28 KEEP - Vmn2r121 NO Spont_1 chrX 121246576 121246576 G A exonic Vmn2r121 synonymous SNV NM_001100616:c.C492T:p.F164F exonic Vmn2r121 synonymous SNV uc009uep.1:c.C492T:p.F164F exonic ENSMUSG00000072049 synonymous SNV ENSMUST00000071277:c.C492T:p.F164F XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121246576 AAAxAAA G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 618 45 5 56.55547 0.131068 0.02 5.069279 179 27 5312 784 60 60 0 1 GG 83.619529 278 0 7980 0 KEEP - Vmn2r121 NO Spont_1 chrX 130429431 130429431 A C intronic Tspan6 NA NA intronic Tspan6 NA NA intronic ENSMUSG00000067377 NA NA XqE3 NA NA chrX 130429431 CAAxTAC A C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 98 0 0 20.316712 0.209302 0.02 -0.3771 34 9 977 256 60 60 0 0 AA 12.030719 40 0 1102 0 KEEP - Tspan6 NO Spont_1 chrX 149344294 149344294 C T intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA ncRNA_intronic ENSMUSG00000083440 NA NA XqF3 NA NA chrX 149344294 CTGxTGT C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 429 3 160 88.792592 0.265306 0.02 2.200431 108 39 3046 1071 60 46 0 0 CC 42.399266 141 0 3913 0 KEEP NA Gpr143 NO Spont_1 chrX 30480089 30480089 C T intergenic "Gm14345(dist=187058),Gm2799(dist=118222)" NA NA intergenic "Gm14351(dist=187058),Gm2799(dist=118222)" NA NA intergenic "ENSMUSG00000079653(dist=104437),ENSMUSG00000078333(dist=118307)" NA NA XqA3.1 "Score=0.980237;Name=No.106626,chrX:3042147" NA chrX 30480089 CATxGAC C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1731 5 267 91.427874 0.076807 0.02 16.404597 613 51 16728 1451 60 38 0 0 CC 181.160863 603 0 16188 0 KEEP NA Gm14345 NO Spont_1 chrX 32129829 32129829 T G UTR3 Gm21950 NA NA UTR3 Gm14374 NA NA UTR3 ENSMUSG00000078323 NA NA XqA3.1 "Score=0.987593;Name=No.106794,chrX:3403988" NA chrX 32129829 ATTxTAG T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1303 7 303 67.40165 0.086957 0.02 9.816335 357 34 10219 1013 47 20 0 0 TT 162.725473 541 0 15112 0 KEEP - Gm21950 NO Spont_1 chrX 38646604 38646604 A G intergenic "Cypt14(dist=1429823),Gria3(dist=107874)" NA NA intergenic "Cypt14(dist=1429823),Gria3(dist=107427)" NA NA downstream ENSMUSG00000081880 NA NA XqA3.3 "Score=0.937075;Name=No.105006,chr8:78235369" NA chrX 38646604 TCAxAAG A G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 227 2 10 13.848554 0.082353 0.02 2.828472 78 7 2223 210 60 53 0 0 AA 15.305636 51 0 1400 0 KEEP NA Cypt14 NO Spont_1 chrX 3907879 3907879 C T exonic "Gm14347,Gm21950,Gm21951" synonymous SNV NM_001085543:c.C784T:p.L262L exonic Gm14347 synonymous SNV uc009sko.1:c.C784T:p.L262L exonic ENSMUSG00000078217 synonymous SNV ENSMUST00000105015:c.C784T:p.L262L XqA1.1 "Score=0.991098;Name=No.106965,chrX:4550554" NA chrX 3907879 ACAxTAA C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1948 8 938 111.456778 0.140992 0.02 9.196341 329 54 9627 1533 38 38 0 0 CC 255.317711 849 0 23673 0 KEEP + Gm14347 NO Spont_1 chrX 45767944 45767944 G A exonic Elf4 nonsynonymous SNV NM_019680:c.C1864T:p.P622S exonic Elf4 nonsynonymous SNV uc009tce.2:c.C1864T:p.P622S exonic ENSMUSG00000031103 nonsynonymous SNV ENSMUST00000033429:c.C1864T:p.P622S XqA4 NA NA chrX 45767944 GGGxCCC G A 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865627 0.865745 0.999863 70 0 0 15.132692 0.210526 0.02 -0.341809 30 8 851 198 60 60 0 0 GG 6.008712 20 0 527 0 KEEP - Elf4 NO Spont_1 chrX 50252040 50252040 G C intergenic "Ccdc160(dist=99395),Phf6(dist=13403)" NA NA intergenic "Ccdc160(dist=99395),mKIAA1823(dist=13403)" NA NA ncRNA_exonic ENSMUSG00000081684 NA NA XqA5 NA NA chrX 50252040 TGAxATC G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 492 2 88 47.504323 0.181034 0.02 2.767196 95 21 2791 613 32 28 0 0 GG 82.414147 274 0 7836 0 KEEP NA Ccdc160 YES Spont_1 chrX 70963177 70963177 G C exonic Abcd1 nonsynonymous SNV NM_007435:c.G808C:p.A270P exonic Abcd1 nonsynonymous SNV uc009tmk.1:c.G808C:p.A270P exonic ENSMUSG00000031378 nonsynonymous SNV ENSMUST00000002084:c.G808C:p.A270P XqA7.3 NA NA chrX 70963177 GTGxCAG G C 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 166 1 0 44.058212 0.268657 0.02 1.197185 49 18 1416 524 60 60 0 0 GG 19.850423 66 0 1814 0 KEEP + Abcd1 YES Spont_1 chrX 83292297 83292297 T G exonic Samt3 nonsynonymous SNV NM_028554:c.T455G:p.V152G exonic 1700072E05Rik nonsynonymous SNV uc009tsc.1:c.T455G:p.V152G exonic ENSMUSG00000035454 nonsynonymous SNV ENSMUST00000047945:c.T455G:p.V152G XqC1 NA NA chrX 83292297 TTGxTTC T G 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 181 0 0 13.121024 0.088889 0.02 0.906614 82 8 2285 209 60 60 0 0 TT 17.74343 59 0 1604 0 KEEP + Samt3 NO Spont_1 chrX 90920846 90920846 C T intronic Pcyt1b NA NA intronic Pcyt1b NA NA intronic ENSMUSG00000035246 NA NA XqC3 NA NA chrX 90920846 ATGxGTG C T 3-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 170 2 0 8.42746 0.066667 0.02 0.941377 70 5 1773 140 60 60 0 0 CC 18.307947 61 0 1508 0 KEEP + Pcyt1b NO Spont_2 chr10 10417864 10417864 G A UTR3 Grm1 NA NA UTR3 Grm1 NA NA UTR3 ENSMUSG00000019828 NA NA 10qA1 NA NA chr10 10417864 TGGxGGT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 109 3 0 9.965081 0.131579 0.02 -0.342024 33 5 955 140 60 60 0 0 GG 14.43868 48 0 1352 0 KEEP - Grm1 NO Spont_2 chr10 120828438 120828438 G A exonic Gns synonymous SNV NM_029364:c.G1296A:p.P432P exonic Gns synonymous SNV uc007hfr.1:c.G222A:p.P74P exonic ENSMUSG00000034707 synonymous SNV ENSMUST00000040344:c.G1296A:p.P432P 10qD2 NA NA chr10 120828438 CCCxGAC G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 372 4 0 26.01144 0.08642 0.02 3.764207 148 14 3872 400 60 60 0 0 GG 40.857244 136 0 3480 0 KEEP + Gns NO Spont_2 chr10 12433156 12433156 T A exonic Utrn nonsynonymous SNV NM_011682:c.A2603T:p.Q868L exonic Utrn nonsynonymous SNV uc007ejw.1:c.A2603T:p.Q868L exonic ENSMUSG00000019820 nonsynonymous SNV ENSMUST00000076817:c.A2603T:p.Q868L 10qA1 NA NA chr10 12433156 GGCxGAG T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 148 2 1 37.197014 0.228571 0.02 1.179666 54 16 1541 459 60 60 0 0 TT 13.232955 44 0 1221 0 KEEP - Utrn NO Spont_2 chr10 12457892 12457892 C A exonic Utrn nonsynonymous SNV NM_011682:c.G1232T:p.R411M exonic Utrn nonsynonymous SNV uc007ejw.1:c.G1232T:p.R411M exonic ENSMUSG00000019820 nonsynonymous SNV ENSMUST00000076817:c.G1232T:p.R411M 10qA1 NA NA chr10 12457892 TGCxTCT C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 254 2 0 30.141945 0.148515 0.02 2.389274 86 15 2501 414 60 60 0 0 CC 31.277051 104 0 2900 0 KEEP - Utrn NO Spont_2 chr10 127346811 127346811 G C exonic Sdr9c7 nonsynonymous SNV NM_027301:c.G735C:p.K245N exonic Sdr9c7 nonsynonymous SNV uc007hkx.1:c.G306C:p.K102N exonic ENSMUSG00000040127 nonsynonymous SNV ENSMUST00000047134:c.G735C:p.K245N 10qD3 NA NA chr10 127346811 AAAxTTG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941739 0.941741 0.999998 106 0 0 14.955517 0.148936 0.02 -0.412056 40 7 1164 202 60 60 0 0 GG 10.227411 34 0 961 0 KEEP + Sdr9c7 YES Spont_2 chr10 129859798 129859798 G C exonic Vmn2r85 nonsynonymous SNV NM_001102602:c.C1443G:p.S481R exonic Vmn2r85 nonsynonymous SNV uc009vac.1:c.C1443G:p.S481R exonic ENSMUSG00000092048 nonsynonymous SNV ENSMUST00000171811:c.C1443G:p.S481R 10qD3 "Score=0.921938;Name=No.6062,chr10:129882212" NA chr10 129859798 ATAxCTT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 601 9 80 119.037446 0.225664 0.02 5.371933 175 51 5044 1471 60 60 0 0 GG 66.47345 221 0 6184 0 KEEP - Vmn2r85 YES Spont_2 chr10 21767977 21767977 A C intergenic "Sgk1(dist=48269),4930444G20Rik(dist=18138)" NA NA intergenic "Sgk1(dist=48269),DQ696813(dist=5248)" NA NA ncRNA_intronic ENSMUSG00000090535 NA NA 10qA3 "Score=0.938067;Name=No.5733,chr10:43928664" NA chr10 21767977 TGAxGTT A C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 96 28 5 16.531378 0.216216 0.02 -0.412143 29 8 833 211 60 37 0 0 AA 13.836611 46 0 1287 0 KEEP NA Sgk1 NO Spont_2 chr10 52265042 52265042 C T ncRNA_exonic Zfa-ps NA NA UTR5 Zfa NA NA UTR5 ENSMUSG00000049576 NA NA 10qB3 NA NA chr10 52265042 ATCxATG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 296 2 0 18.635374 0.076923 0.02 2.225939 132 11 3900 302 60 60 0 0 CC 32.488873 108 0 3084 0 KEEP - Zfa-ps NO Spont_2 chr10 7587340 7587340 G C exonic Zc3h12d nonsynonymous SNV NM_172785:c.G1075C:p.A359P exonic Zc3h12d nonsynonymous SNV uc007eiq.2:c.G1075C:p.A359P exonic ENSMUSG00000039981 nonsynonymous SNV ENSMUST00000039484:c.G1075C:p.A359P 10qA1 NA NA chr10 7587340 GCGxCCA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522098 0.522161 0.999879 57 0 0 18.987391 0.333333 0.02 -0.210111 16 8 421 218 60 60 0 0 GG 6.616551 22 0 602 0 KEEP + Zc3h12d YES Spont_2 chr10 78954091 78954091 T C exonic Vmn2r83 nonsynonymous SNV NM_001104537:c.T1787C:p.L596P exonic Vmn2r83 nonsynonymous SNV uc009vab.1:c.T1787C:p.L596P exonic ENSMUSG00000091381 nonsynonymous SNV ENSMUST00000167976:c.T1787C:p.L596P 10qC1 NA NA chr10 78954091 CACxTAT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 163 0 0 45.29234 0.260274 0.02 1.153383 54 19 1545 544 60 60 0 0 TT 20.747467 69 0 1915 0 KEEP + Vmn2r83 NO Spont_2 chr10 79343787 79343787 G C exonic Prtn3 nonsynonymous SNV NM_011178:c.G240C:p.W80C exonic Prtn3 nonsynonymous SNV uc007gah.1:c.G240C:p.W80C exonic ENSMUSG00000057729 nonsynonymous SNV ENSMUST00000006679:c.G240C:p.W80C 10qC1 NA NA chr10 79343787 CTGxCAG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 134 0 0 28.03179 0.183099 0.02 1.170891 58 13 1680 365 60 60 0 0 GG 11.730318 39 0 1081 0 KEEP + Prtn3 YES Spont_2 chr10 79456184 79456184 C G exonic Cnn2 nonsynonymous SNV NM_007725:c.C519G:p.N173K exonic Cnn2 nonsynonymous SNV uc007gaz.1:c.C519G:p.N173K exonic ENSMUSG00000004665 nonsynonymous SNV ENSMUST00000105374:c.C402G:p.N134K 10qC1 NA NA chr10 79456184 CAAxAAG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 282 0 0 67.693075 0.256881 0.02 2.721046 81 28 2309 813 60 60 0 0 CC 38.150354 131 1 3655 11 KEEP + Cnn2 YES Spont_2 chr10 79483948 79483948 C G intronic Hmha1 NA NA intronic Hmha1 NA NA intronic ENSMUSG00000035697 NA NA 10qC1 NA NA chr10 79483948 CAGxCAG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 200 0 0 55.640985 0.226415 0.02 2.658013 82 24 2349 688 60 60 0 0 CC 19.516414 65 0 1788 0 KEEP + Hmha1 YES Spont_2 chr10 79531133 79531133 C G exonic Sbno2 synonymous SNV NM_183426:c.G1074C:p.G358G exonic Sbno2 synonymous SNV uc007gbq.1:c.G1026C:p.G342G exonic ENSMUSG00000035673 synonymous SNV ENSMUST00000092316:c.G852C:p.G284G 10qC1 NA NA chr10 79531133 CTGxCCA C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 76 0 0 8.50684 0.142857 0.02 -0.30651 30 5 849 123 60 60 0 0 CC 8.689333 29 0 755 0 KEEP - Sbno2 YES Spont_2 chr10 79765198 79765198 C G exonic Apc2 nonsynonymous SNV NM_011789:c.C372G:p.S124R exonic Apc2 nonsynonymous SNV uc007gcp.1:c.C372G:p.S124R exonic ENSMUSG00000020135 nonsynonymous SNV ENSMUST00000020349:c.C372G:p.S124R 10qC1 NA NA chr10 79765198 GAGxCGG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 139 0 0 40.865406 0.320755 0.02 1.427476 36 17 1033 472 60 60 0 0 CC 17.444833 58 0 1603 0 KEEP + Apc2 YES Spont_2 chr10 80254023 80254023 T C exonic Dot1l synonymous SNV NM_199322:c.T4332C:p.P1444P exonic Dot1l synonymous SNV uc007gel.1:c.T4332C:p.P1444P exonic ENSMUSG00000061589 synonymous SNV ENSMUST00000149394:c.T969C:p.P323P 10qC1 NA NA chr10 80254023 CCCxGGT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 356 6 0 13.731237 0.064286 0.02 2.341955 131 9 3741 239 60 60 0 0 TT 45.110425 150 0 4125 0 KEEP + Dot1l NO Spont_2 chr10 80268198 80268198 G C exonic Amh nonsynonymous SNV NM_007445:c.G206C:p.R69T exonic Amh nonsynonymous SNV uc007get.1:c.G206C:p.R69T exonic ENSMUSG00000035262 nonsynonymous SNV ENSMUST00000036016:c.G206C:p.R69T 10qC1 NA NA chr10 80268198 TGAxGGT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 74 0 0 11.446634 0.162162 0.02 -0.324475 31 6 908 157 60 60 0 0 GG 9.325169 31 0 878 0 KEEP + Amh YES Spont_2 chr10 80777847 80777847 C G exonic Pip5k1c nonsynonymous SNV NM_001146687:c.C1889G:p.S630C exonic Pip5k1c nonsynonymous SNV uc007ghc.2:c.C1889G:p.S630C exonic ENSMUSG00000034902 nonsynonymous SNV ENSMUST00000045469:c.C1889G:p.S630C 10qC1 NA NA chr10 80777847 CCTxTAC C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 183 3 0 43.223535 0.264706 0.02 1.295819 50 18 1464 517 60 60 0 0 CC 22.249361 74 0 2105 0 KEEP + Pip5k1c YES Spont_2 chr11 115928023 115928023 C A exonic Unc13d nonsynonymous SNV NM_001009573:c.G2419T:p.V807F exonic Unc13d nonsynonymous SNV uc007mjt.1:c.G2419T:p.V807F exonic ENSMUSG00000057948 nonsynonymous SNV ENSMUST00000106450:c.G2425T:p.V809F 11qE2 NA NA chr11 115928023 GGAxCAG C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999999 93 0 0 23.196776 0.285714 0.02 -0.305945 25 10 701 275 60 60 0 0 CC 10.472086 35 0 931 0 KEEP - Unc13d NO Spont_2 chr11 120653358 120653358 T G exonic Dus1l nonsynonymous SNV NM_026824:c.A926C:p.K309T exonic Dus1l nonsynonymous SNV uc007mur.1:c.A926C:p.K309T exonic ENSMUSG00000025155 nonsynonymous SNV ENSMUST00000026151:c.A926C:p.K309T 11qE2 NA NA chr11 120653358 AGCxTTA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 386 2 0 38.387704 0.133333 0.02 2.075031 130 20 3722 544 60 60 0 0 TT 49.629044 165 0 4592 0 KEEP - Dus1l NO Spont_2 chr11 121817933 121817933 T C intergenic "Ptchd3(dist=113183),NONE(dist=NONE)" NA NA intergenic "Ptchd3(dist=112705),NONE(dist=NONE)" NA NA intronic ENSMUSG00000078564 NA NA 11qE2 "Score=0.950902;Name=No.13053,chr11:121784069" NA chr11 121817933 CCCxGTG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 218 22 1 9.967407 0.078947 0.02 0.925498 70 6 1969 162 60 60 0 0 TT 28.87144 96 0 2635 0 KEEP NA Ptchd3 NO Spont_2 chr11 3944054 3944054 T G intronic Sec14l4 NA NA intronic Sec14l4 NA NA intronic ENSMUSG00000019368 NA NA 11qA1 NA NA chr11 3944054 CTCxTAT T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 70 0 0 19.593068 0.346154 0.02 -0.227664 17 9 484 226 60 60 0 0 TT 11.429306 38 0 1066 0 KEEP + Sec14l4 NO Spont_2 chr11 45721480 45721480 T G exonic Clint1 nonsynonymous SNV NM_001045520:c.T1459G:p.L487V exonic Clint1 nonsynonymous SNV uc007inq.1:c.T1459G:p.L487V exonic ENSMUSG00000006169 nonsynonymous SNV ENSMUST00000164692:c.T187G:p.L63V 11qB1.1 NA NA chr11 45721480 AACxTAC T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457697 0.457757 0.999869 49 0 0 9.766873 0.227273 0.02 -0.192901 17 5 486 125 60 60 0 0 TT 6.316333 21 0 581 0 KEEP + Clint1 NO Spont_2 chr11 51969103 51969103 T G ncRNA_exonic Olfr1372-ps1 NA NA exonic Olfr1383 nonsynonymous SNV uc011xuo.1:c.A641C:p.K214T ncRNA_exonic ENSMUSG00000084141 NA NA 11qB1.3 "Score=0.95828;Name=No.12948,chr11:49336944" NA chr11 51969103 GACxTGA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 90 2 0 23.149508 0.323529 0.02 -0.298082 23 11 661 272 60 60 0 0 TT 12.332699 41 0 1148 0 KEEP - Olfr1372-ps1 NO Spont_2 chr11 5735760 5735760 G C exonic Polm nonsynonymous SNV NM_017401:c.C415G:p.P139A exonic Polm nonsynonymous SNV uc007hxf.2:c.C415G:p.P139A exonic ENSMUSG00000020474 nonsynonymous SNV ENSMUST00000020767:c.C415G:p.P139A 11qA1 NA NA chr11 5735760 CTGxCAT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 95 0 0 6.306947 0.125 0.02 -0.210471 21 3 596 88 60 60 0 0 GG 14.411192 48 0 1288 0 KEEP - Polm YES Spont_2 chr11 60311879 60311879 A T exonic Myo15 synonymous SNV NM_182698:c.A2538T:p.T846T exonic Myo15 synonymous SNV uc007jga.1:c.A2532T:p.T844T exonic ENSMUSG00000042678 synonymous SNV ENSMUST00000081823:c.A2538T:p.T846T 11qB2 NA NA chr11 60311879 GACxGTG A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 346 5 0 98.148452 0.307692 0.02 2.438724 90 40 2492 1139 60 60 0 0 AA 42.106207 140 0 3852 0 KEEP + Myo15 NO Spont_2 chr11 6500751 6500751 T A exonic Nacad synonymous SNV NM_001081652:c.A2442T:p.I814I exonic Nacad synonymous SNV uc007hyy.1:c.A2442T:p.I814I exonic ENSMUSG00000041073 synonymous SNV ENSMUST00000045713:c.A2442T:p.I814I 11qA1 NA NA chr11 6500751 GGGxATG T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 190 0 0 36.945108 0.238806 0.02 1.055194 51 16 1349 453 60 60 0 0 TT 23.408548 81 1 2060 8 KEEP - Nacad NO Spont_2 chr11 72553565 72553565 T C intronic Ankfy1 NA NA UTR5 Ankfy1 NA NA exonic ENSMUSG00000020790 nonsynonymous SNV ENSMUST00000127610:c.T1178C:p.V393A 11qB4 NA NA chr11 72553565 ACGxAGG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 128 0 0 23.608624 0.204082 0.02 -0.438305 39 10 1033 296 60 60 0 0 TT 18.943268 63 0 1661 0 KEEP + Ankfy1 NO Spont_2 chr11 74229718 74229718 C A intronic Rap1gap2 NA NA ncRNA_intronic mKIAA1039 NA NA intronic ENSMUSG00000038807 NA NA 11qB5 NA NA chr11 74229718 GGCxCTT C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 34 0 0 15.965089 0.461538 0.02 -0.114002 7 6 197 170 60 60 0 0 CC 3.909464 13 0 354 0 KEEP - Rap1gap2 NO Spont_2 chr11 75255505 75255505 G C exonic Wdr81 nonsynonymous SNV NM_138950:c.C5571G:p.H1857Q exonic Wdr81 nonsynonymous SNV uc007kds.2:c.C1911G:p.H637Q exonic ENSMUSG00000045374 nonsynonymous SNV ENSMUST00000100845:c.C2250G:p.H750Q 11qB5 NA NA chr11 75255505 GTAxTGG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 134 0 0 10.573107 0.111111 0.02 -0.403197 40 5 1123 150 60 60 0 0 GG 19.905331 70 1 1907 10 KEEP - Wdr81 YES Spont_2 chr11 75692437 75692437 T G intronic Rph3al NA NA intronic Rph3al NA NA intronic ENSMUSG00000020847 NA NA 11qB5 NA NA chr11 75692437 CACxTCA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 135 4 0 49.630849 0.407407 0.02 1.221805 32 22 925 550 60 60 0 0 TT 16.536267 55 0 1523 0 KEEP - Rph3al NO Spont_2 chr11 78172566 78172566 A G exonic Foxn1 nonsynonymous SNV NM_001277290:c.T1631C:p.L544P exonic Foxn1 nonsynonymous SNV uc007kjc.1:c.T1631C:p.L544P exonic ENSMUSG00000002057 nonsynonymous SNV ENSMUST00000108294:c.T1634C:p.L545P 11qB5 NA NA chr11 78172566 CACxGAT A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138793 0.139832 0.99257 22 0 0 9.991222 0.333333 0.02 -0.105238 8 4 230 114 60 60 0 0 AA 2.399048 8 0 209 0 KEEP - Foxn1 NO Spont_2 chr11 83590813 83590813 C G exonic Heatr6 nonsynonymous SNV NM_145432:c.C2630G:p.A877G exonic Heatr6 nonsynonymous SNV uc007kpw.1:c.C311G:p.A104G exonic ENSMUSG00000000976 nonsynonymous SNV ENSMUST00000001002:c.C2630G:p.A877G 11qC NA NA chr11 83590813 GCGxCAA C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16171 0.162467 0.995343 32 0 0 15.764713 0.461538 0.02 -0.114004 7 6 201 168 60 60 0 0 CC 4.210359 14 0 384 0 KEEP + Heatr6 YES Spont_2 chr11 94272855 94272855 G C exonic Cacna1g nonsynonymous SNV NM_001112813:c.C5815G:p.R1939G exonic Cacna1g nonsynonymous SNV uc007kyp.2:c.C589G:p.R197G exonic ENSMUSG00000020866 nonsynonymous SNV ENSMUST00000073986:c.C5761G:p.R1921G 11qD NA NA chr11 94272855 TCCxGCT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 45 0 0 17.836599 0.466667 0.02 -0.140267 8 7 219 190 60 60 0 0 GG 7.515591 25 0 661 0 KEEP - Cacna1g YES Spont_2 chr11 95536633 95536633 G C intronic Phb NA NA intronic Phb NA NA intronic ENSMUSG00000038845 NA NA 11qD NA NA chr11 95536633 TGGxTGG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053947 0.054137 0.99649 25 0 0 11.499895 0.5 0.02 -0.070163 4 4 114 120 60 60 0 0 GG 4.142449 14 0 342 0 KEEP + Phb YES Spont_2 chr11 99873700 99873700 G T exonic Krt33a nonsynonymous SNV NM_027983:c.C829A:p.R277S exonic Krt33a nonsynonymous SNV uc007lka.2:c.C829A:p.R277S exonic ENSMUSG00000035592 nonsynonymous SNV ENSMUST00000018399:c.C829A:p.R277S 11qD NA NA chr11 99873700 TGCxTCT G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 310 0 0 105.52918 0.359649 0.02 2.570089 73 41 1909 1183 60 60 0 0 GG 43.571937 145 0 3648 0 KEEP - Krt33a NO Spont_2 chr12 16955355 16955355 G A exonic Rock2 nonsynonymous SNV NM_009072:c.G815A:p.G272E exonic Rock2 nonsynonymous SNV uc007ncg.1:c.G815A:p.G272E exonic ENSMUSG00000020580 nonsynonymous SNV ENSMUST00000020904:c.G815A:p.G272E 12qA1.1 NA NA chr12 16955355 ATGxGCG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 131 1 0 63.962636 0.628571 0.02 -0.306954 13 22 379 635 60 60 0 0 GG 23.160911 77 0 2150 0 KEEP + Rock2 NO Spont_2 chr12 25563040 25563040 T A intronic Mboat2 NA NA intronic "LPCAT4,Mboat2" NA NA intronic ENSMUSG00000020646 NA NA 12qA1.3 NA NA chr12 25563040 TTTxAAT T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 106 0 0 29.129696 0.363636 0.02 -0.30692 21 12 598 328 60 60 0 0 TT 18.046349 60 0 1654 0 KEEP + Mboat2 NO Spont_2 chr12 42181095 42181095 G A UTR5 Lrrn3 NA NA UTR5 Lrrn3 NA NA UTR5 ENSMUSG00000036295 NA NA 12qB1 NA NA chr12 42181095 ATCxTGG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 117 0 0 31.382176 0.317073 0.02 -0.359464 28 13 752 363 60 60 0 0 GG 15.61295 52 0 1288 0 KEEP + Lrrn3 NO Spont_2 chr12 70473887 70473887 G C exonic Arf6 nonsynonymous SNV NM_007481:c.G107C:p.G36A exonic Arf6 nonsynonymous SNV uc007nsj.1:c.G107C:p.G36A exonic ENSMUSG00000044147 nonsynonymous SNV ENSMUST00000050063:c.G107C:p.G36A 12qC2 NA NA chr12 70473887 TGGxCCA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 157 2 0 33.154109 0.333333 0.02 -0.340662 26 13 716 377 60 60 0 0 GG 27.252964 91 0 2443 0 KEEP + Arf6 YES Spont_2 chr13 113710614 113710614 C G exonic Skiv2l2 nonsynonymous SNV NM_028151:c.G287C:p.R96T exonic Skiv2l2 nonsynonymous SNV uc007rws.1:c.G287C:p.R96T exonic ENSMUSG00000016018 nonsynonymous SNV ENSMUST00000022281:c.G287C:p.R96T 13qD2.2 NA NA chr13 113710614 ACTxTGG C G 4-Mef-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.996233 0.996233 1 188 0 0 24.308174 0.15942 0.02 1.287015 58 11 1716 322 60 60 0 0 CC 24.347281 81 0 2297 0 KEEP - Skiv2l2 YES Spont_2 chr13 13898399 13898399 G T exonic Gng4 stopgain SNV NM_010317:c.G61T:p.E21X exonic Gng4 stopgain SNV uc007pml.1:c.G61T:p.E21X exonic ENSMUSG00000021303 stopgain SNV ENSMUST00000021734:c.G61T:p.E21X 13qA1 NA NA chr13 13898399 GTGxAGC G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 87 0 0 17.462841 0.235294 0.02 -0.298164 26 8 754 217 60 60 0 0 GG 9.322429 31 0 870 0 KEEP + Gng4 NO Spont_2 chr13 21164784 21164784 G C exonic Olfr1370 nonsynonymous SNV NM_146535:c.C385G:p.P129A exonic Olfr1370 nonsynonymous SNV uc007ppv.1:c.C385G:p.P129A exonic ENSMUSG00000042869 nonsynonymous SNV ENSMUST00000058168:c.C385G:p.P129A 13qA2 NA NA chr13 21164784 GGGxCTT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 72 0 0 14.665002 0.272727 0.02 -0.192942 16 6 463 174 60 60 0 0 GG 12.311614 41 0 1116 0 KEEP - Olfr1370 YES Spont_2 chr13 24904623 24904623 C G exonic BC005537 nonsynonymous SNV NM_024473:c.C682G:p.P228A exonic BC005537 nonsynonymous SNV uc007pwi.1:c.C682G:p.P228A exonic ENSMUSG00000019132 nonsynonymous SNV ENSMUST00000019276:c.C682G:p.P228A 13qA3.1 NA NA chr13 24904623 ATGxCAG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 111 1 0 17.490981 0.173913 0.02 -0.403415 38 8 1095 229 60 60 0 0 CC 13.486476 45 0 1221 0 KEEP + BC005537 YES Spont_2 chr13 30847073 30847073 T C exonic Irf4 nonsynonymous SNV NM_013674:c.T704C:p.I235T exonic Irf4 nonsynonymous SNV uc007pyz.1:c.T704C:p.I235T exonic ENSMUSG00000021356 nonsynonymous SNV ENSMUST00000021784:c.T704C:p.I235T 13qA3.2 NA NA chr13 30847073 CCAxTGA T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 114 0 0 8.208546 0.108108 0.02 -0.324471 33 4 930 118 60 60 0 0 TT 16.542141 55 0 1513 0 KEEP + Irf4 NO Spont_2 chr13 41241484 41241484 A C intergenic "Gcm2(dist=36127),Elovl2(dist=36267)" NA NA intergenic "Gcm2(dist=35932),Elovl2(dist=36267)" NA NA exonic ENSMUSG00000038651 nonsynonymous SNV ENSMUST00000046454:c.A561C:p.E187D 13qA3.3 NA NA chr13 41241484 AGAxGCA A C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 69 1 0 7.539194 0.16 0.02 -0.219235 21 4 607 104 60 60 0 0 AA 9.625783 32 0 901 0 KEEP NA Gcm2 NO Spont_2 chr13 55268301 55268301 G C exonic Fgfr4 nonsynonymous SNV NM_008011:c.G1895C:p.R632P exonic Fgfr4 nonsynonymous SNV uc011yzq.1:c.G1895C:p.R632P exonic ENSMUSG00000005320 nonsynonymous SNV ENSMUST00000005452:c.G1895C:p.R632P 13qB1 NA NA chr13 55268301 CACxTGG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 79 2 0 11.36999 0.185185 0.02 -0.289282 22 5 585 146 70 60 0 0 GG 13.22294 44 0 1108 0 KEEP + Fgfr4 YES Spont_2 chr13 58939328 58939328 T G intronic Ntrk2 NA NA intronic Ntrk2 NA NA intronic ENSMUSG00000055254 NA NA 13qB1 NA NA chr13 58939328 TTTxTGT T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 90 0 0 16.650339 0.225806 0.02 -0.271867 24 7 687 205 60 60 0 0 TT 14.136661 47 0 1303 0 KEEP + Ntrk2 NO Spont_2 chr13 61888644 61888644 C A downstream BC052688 NA NA downstream BC052688 NA NA intergenic "ENSMUSG00000074870(dist=217218),ENSMUSG00000076249(dist=16857)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:62175994" NA chr13 61888644 TGTxAAA C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 195 0 7 46.170301 1 0.02 -0.228009 0 14 0 395 0 36 0 0 CC 38.806443 129 0 3718 0 KEEP NA BC052688 NO Spont_2 chr13 62227189 62227189 G A intergenic "BC052688(dist=338547),Zfp808(dist=4061)" NA NA ncRNA_intronic A130040M12Rik NA NA intergenic "ENSMUSG00000074868(dist=89666),ENSMUSG00000074867(dist=4087)" NA NA 13qB3 "Score=0.96047;Name=No.33003,chr13:61861764" NA chr13 62227189 GTCxTTT G A 4-Mef-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.99993 0.99993 1 199 2 8 7.373818 0.054348 0.02 0.75593 87 5 2309 134 60 36 0 0 GG 25.545809 85 0 2162 0 KEEP - BC052688 NO Spont_2 chr13 65442490 65442490 A G intergenic "Zfp369(dist=43387),Gm10324(dist=771899)" NA NA intergenic "Zfp369(dist=43387),AK145544(dist=57800)" NA NA intergenic "ENSMUSG00000021514(dist=36961),ENSMUSG00000090514(dist=38211)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442490 ACCxTGT A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 233 14 29 12.595538 0.094595 0.02 0.906099 67 7 1820 193 60 20 0 1 AA 30.674498 102 0 2747 0 KEEP NA Zfp369 NO Spont_2 chr13 65442544 65442544 C A intergenic "Zfp369(dist=43441),Gm10324(dist=771845)" NA NA intergenic "Zfp369(dist=43441),AK145544(dist=57746)" NA NA intergenic "ENSMUSG00000021514(dist=37015),ENSMUSG00000090514(dist=38157)" NA NA 13qB3 "Score=0.958698;Name=No.33357,chr13:65970058" NA chr13 65442544 AACxTTT C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 128 11 42 15.901205 0.304348 0.02 -0.23678 16 7 471 187 29 20 0 0 CC 20.154559 67 0 1920 0 KEEP NA Zfp369 NO Spont_2 chr13 6614018 6614018 T C exonic Pfkp nonsynonymous SNV NM_019703:c.A799G:p.I267V exonic Pfkp nonsynonymous SNV uc007pjz.1:c.A799G:p.I267V exonic ENSMUSG00000021196 nonsynonymous SNV ENSMUST00000021614:c.A799G:p.I267V 13qA1 NA NA chr13 6614018 TGAxATT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.926639 0.92664 0.999999 100 2 0 23.722826 0.222222 0.02 -0.394582 35 10 946 293 60 60 0 0 TT 10.523234 35 0 924 0 KEEP - Pfkp NO Spont_2 chr13 66816412 66816412 G C intergenic "2410141K09Rik(dist=274358),Uqcrb(dist=185145)" NA NA ncRNA_intronic AK049212 NA NA intergenic "ENSMUSG00000078996(dist=28521),ENSMUSG00000090632(dist=135867)" NA NA 13qB3 "Score=0.982334;Name=No.34308,chr13:66500822" NA chr13 66816412 CCAxCAG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99986 0.999991 0.999869 183 4 10 14.282611 0.074766 0.02 2.640224 99 8 2895 228 60 20 0 0 GG 6.317424 21 0 602 0 KEEP - 2410141K09Rik YES Spont_2 chr13 66816489 66816489 G T intergenic "2410141K09Rik(dist=274435),Uqcrb(dist=185068)" NA NA ncRNA_intronic AK049212 NA NA intergenic "ENSMUSG00000078996(dist=28598),ENSMUSG00000090632(dist=135790)" NA NA 13qB3 "Score=0.982334;Name=No.34308,chr13:66500822" NA chr13 66816489 CTTxTGG G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996096 0.996233 0.999863 117 3 17 9.205327 0.075758 0.02 1.188459 61 5 1706 145 60 30 0 0 GG 6.014626 20 0 540 0 KEEP - 2410141K09Rik NO Spont_2 chr13 73405068 73405068 A T exonic Irx4 nonsynonymous SNV NM_018885:c.A527T:p.K176M exonic Irx4 nonsynonymous SNV uc007rdf.2:c.A527T:p.K176M exonic ENSMUSG00000021604 nonsynonymous SNV ENSMUST00000022095:c.A527T:p.K176M 13qC1 NA NA chr13 73405068 AGAxGAT A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 144 2 0 21.421152 0.192308 0.02 1.239259 42 10 1199 277 60 60 0 0 AA 18.348929 61 0 1713 0 KEEP + Irx4 NO Spont_2 chr13 94973970 94973970 T C exonic Scamp1 nonsynonymous SNV NM_029153:c.A1001G:p.K334R exonic Scamp1 nonsynonymous SNV uc007rlr.1:c.A845G:p.K282R exonic ENSMUSG00000021687 nonsynonymous SNV ENSMUST00000153558:c.A845G:p.K282R 13qD1 NA NA chr13 94973970 CCCxTGA T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 243 5 0 51.344091 0.253012 0.02 1.066176 62 21 1755 617 60 60 0 0 TT 31.881525 106 0 2938 0 KEEP - Scamp1 NO Spont_2 chr13 94973971 94973971 T A exonic Scamp1 stopgain SNV NM_029153:c.A1000T:p.K334X exonic Scamp1 stopgain SNV uc007rlr.1:c.A844T:p.K282X exonic ENSMUSG00000021687 stopgain SNV ENSMUST00000153558:c.A844T:p.K282X 13qD1 NA NA chr13 94973971 CCTxGAA T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 244 5 0 49.635807 0.253012 0.02 1.065687 62 21 1734 600 60 60 0 0 TT 31.579884 105 0 2878 0 KEEP - Scamp1 NO Spont_2 chr13 98735476 98735476 T G exonic Arhgef28 nonsynonymous SNV NM_012026:c.A2444C:p.D815A exonic Rgnef nonsynonymous SNV uc007rol.1:c.A1505C:p.D502A exonic ENSMUSG00000021662 nonsynonymous SNV ENSMUST00000022166:c.A2441C:p.D814A 13qD1 NA NA chr13 98735476 AGGxCGA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 178 0 0 40.493451 0.261538 0.02 1.322313 48 17 1324 486 60 60 0 0 TT 20.353017 70 1 1890 6 KEEP - Arhgef28 NO Spont_2 chr14 20420773 20420773 T A exonic Gm5458 nonsynonymous SNV NM_001024706:c.A236T:p.D79V exonic Gm5458 nonsynonymous SNV uc011zgi.1:c.A236T:p.D79V exonic ENSMUSG00000071574 nonsynonymous SNV ENSMUST00000096121:c.A236T:p.D79V 14qA3 "Score=0.986572;Name=No.49681,chr14:7155478" NA chr14 20420773 ATGxCAT T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1470 203 583 157.182243 0.258687 0.02 6.696736 192 67 5475 1895 46 46 0 0 TT 212.934432 708 0 19576 0 KEEP - Gm5458 NO Spont_2 chr14 3072136 3072136 G C exonic "Gm2897,LOC100861615" nonsynonymous SNV NM_001177715:c.G381C:p.K127N exonic Gm2897 nonsynonymous SNV uc011zfb.1:c.G381C:p.K127N exonic ENSMUSG00000079410 nonsynonymous SNV ENSMUST00000112820:c.G381C:p.K127N 14qA1 "Score=0.985106;Name=No.41715,chr14:8351657" NA chr14 3072136 GAAxAAA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1950 42 156 183.059318 0.124646 0.02 19.895653 618 88 18239 2563 28 27 0 0 GG 263.425507 876 0 24838 0 KEEP + Gm2897 YES Spont_2 chr14 52032716 52032716 T A exonic Vmn2r88 synonymous SNV NM_011686:c.T210A:p.I70I exonic "Vmn2r-ps160,Vmn2r88" synonymous SNV uc009vao.1:c.T210A:p.I70I exonic ENSMUSG00000000606 synonymous SNV ENSMUST00000022438:c.T210A:p.I70I 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032716 AATxGCA T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 298 7 6 13.106257 0.111111 0.02 2.434576 56 7 1594 193 60 60 0 0 TT 47.521079 158 0 4365 0 KEEP + Vmn2r88 NO Spont_2 chr14 52032726 52032726 G A exonic Vmn2r88 nonsynonymous SNV NM_011686:c.G220A:p.E74K exonic "Vmn2r-ps160,Vmn2r88" nonsynonymous SNV uc009vao.1:c.G220A:p.E74K exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000022438:c.G220A:p.E74K 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032726 AGTxAAT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 313 7 6 15.354523 0.125 0.02 2.425694 56 8 1655 220 60 60 0 0 GG 47.833081 159 0 4586 0 KEEP + Vmn2r88 NO Spont_2 chr14 52032928 52032928 C A exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C422A:p.A141D exonic "Vmn2r-ps160,Vmn2r88" nonsynonymous SNV uc009vao.1:c.C422A:p.A141D exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000022438:c.C422A:p.A141D 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032928 GTGxCAT C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 185 4 0 21.536773 0.166667 0.02 1.144567 50 10 1438 285 60 60 0 0 CC 28.874457 96 0 2654 0 KEEP + Vmn2r88 NO Spont_2 chr14 52032935 52032935 T C exonic Vmn2r88 synonymous SNV NM_011686:c.T429C:p.G143G exonic "Vmn2r-ps160,Vmn2r88" synonymous SNV uc009vao.1:c.T429C:p.G143G exonic ENSMUSG00000000606 synonymous SNV ENSMUST00000022438:c.T429C:p.G143G 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032935 AGGxCTT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 193 5 0 41.097834 0.274194 0.02 1.234491 45 17 1258 488 60 60 0 0 TT 30.046655 100 0 2713 0 KEEP + Vmn2r88 NO Spont_2 chr14 52036477 52036477 C T exonic Vmn2r88 nonsynonymous SNV NM_011686:c.C1640T:p.P547L exonic Vmn2r88 nonsynonymous SNV uc009vao.1:c.C1640T:p.P547L exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000159674:c.C1481T:p.P494L 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52036477 GCCxAGA C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 590 31 18 29.668168 0.093923 0.02 4.974254 164 17 4875 460 60 60 0 0 CC 86.019164 286 0 8140 0 KEEP + Vmn2r88 NO Spont_2 chr14 52078475 52078475 G A intronic Vmn2r89 NA NA UTR5 Vmn2r121 NA NA intronic "ENSMUSG00000068399,ENSMUSG00000070448" NA NA 14qC1 "Score=0.917456;Name=No.56670,chrUn_random:2738547" NA chr14 52078475 GAGxTTT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 780 96 26 34.554821 0.082988 0.02 6.070423 221 20 6339 549 60 60 0 0 GG 116.091924 386 0 10631 0 KEEP + Vmn2r89 NO Spont_2 chr14 67858315 67858315 G A exonic Ebf2 nonsynonymous SNV NM_001276387:c.G469A:p.E157K exonic Ebf2 nonsynonymous SNV uc007ukx.1:c.G469A:p.E157K exonic ENSMUSG00000022053 nonsynonymous SNV ENSMUST00000022637:c.G469A:p.E157K 14qD1 NA NA chr14 67858315 CACxAGG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 119 0 0 109.323748 1 0.02 -0.289395 0 33 0 936 0 60 0 0 GG 18.039657 60 0 1622 0 KEEP + Ebf2 NO Spont_2 chr15 28226776 28226776 C A exonic Dnah5 nonsynonymous SNV NM_133365:c.C4360A:p.P1454T exonic Dnahc5 nonsynonymous SNV uc007vjy.1:c.C4360A:p.P1454T exonic ENSMUSG00000022262 nonsynonymous SNV ENSMUST00000067048:c.C4360A:p.P1454T 15qB1 NA NA chr15 28226776 CTGxCTC C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 66 0 0 7.64628 0.129032 0.02 -0.270463 27 4 739 109 60 60 0 0 CC 7.519742 25 0 697 0 KEEP + Dnah5 NO Spont_2 chr15 37926378 37926378 C A exonic Ubr5 nonsynonymous SNV NM_001081359:c.G5628T:p.Q1876H exonic Ubr5 nonsynonymous SNV uc007vno.1:c.G5628T:p.Q1876H exonic ENSMUSG00000037487 nonsynonymous SNV ENSMUST00000110336:c.G5628T:p.Q1876H 15qB3.1 NA NA chr15 37926378 ATTxTGA C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 93 2 0 19.881123 0.243243 0.02 -0.324482 28 9 817 245 60 60 0 0 CC 12.333946 41 0 1177 0 KEEP - Ubr5 NO Spont_2 chr15 43094165 43094165 T C exonic Eif3e nonsynonymous SNV NM_008388:c.A931G:p.K311E exonic Eif3e nonsynonymous SNV uc007vpj.1:c.A784G:p.K262E exonic ENSMUSG00000022336 nonsynonymous SNV ENSMUST00000022960:c.A931G:p.K311E 15qB3.2 NA NA chr15 43094165 GCTxTTT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 188 0 0 18.484863 0.104651 0.02 1.137962 77 9 2215 267 60 60 0 0 TT 19.550849 65 0 1804 0 KEEP - Eif3e NO Spont_2 chr15 44401077 44401077 C G exonic Pkhd1l1 nonsynonymous SNV NM_138674:c.C10181G:p.T3394S exonic Pkhd1l1 nonsynonymous SNV uc007vpy.1:c.C10181G:p.T3394S exonic ENSMUSG00000038725 nonsynonymous SNV ENSMUST00000038336:c.C10181G:p.T3394S 15qB3.2 NA NA chr15 44401077 GAAxCTA C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 127 0 0 37.525041 0.280702 0.02 1.393279 41 16 1177 446 60 60 0 0 CC 13.532623 45 0 1231 0 KEEP + Pkhd1l1 YES Spont_2 chr15 78831960 78831960 C G exonic Triobp nonsynonymous SNV NM_001024716:c.C1271G:p.A424G exonic Triobp nonsynonymous SNV uc007wsa.1:c.C1271G:p.A424G exonic ENSMUSG00000033088 nonsynonymous SNV ENSMUST00000041035:c.C1130G:p.A377G 15qE1 NA NA chr15 78831960 AAGxCAT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229148 0.229173 0.999892 46 0 0 6.972661 0.2 0.02 -0.131549 12 3 343 88 60 60 0 0 CC 6.918213 23 0 642 0 KEEP + Triobp YES Spont_2 chr15 79722691 79722691 C A ncRNA_exonic D730005E14Rik NA NA ncRNA_exonic D730005E14Rik NA NA upstream ENSMUSG00000009585 NA NA 15qE1 NA NA chr15 79722691 CATxAGT C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 120 0 0 21.141992 0.185185 0.02 1.186809 44 10 1280 276 60 70 0 0 CC 13.838222 46 0 1322 0 KEEP - D730005E14Rik NO Spont_2 chr15 85697948 85697948 G C exonic Gtse1 nonsynonymous SNV NM_013882:c.G911C:p.G304A exonic Gtse1 nonsynonymous SNV uc007xdq.2:c.G911C:p.G304A exonic ENSMUSG00000022385 nonsynonymous SNV ENSMUST00000023018:c.G911C:p.G304A 15qE2 NA NA chr15 85697948 CTGxCAA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.522139 0.522161 0.999957 61 0 0 11.153506 0.208333 0.02 -0.21048 19 5 552 141 60 60 0 0 GG 7.519882 25 0 700 0 KEEP + Gtse1 YES Spont_2 chr15 96201716 96201716 C A exonic Arid2 nonsynonymous SNV NM_175251:c.C3278A:p.P1093H exonic Arid2 nonsynonymous SNV uc007xkd.2:c.C3278A:p.P1093H exonic ENSMUSG00000033237 nonsynonymous SNV ENSMUST00000058749:c.C2708A:p.P903H 15qF1 NA NA chr15 96201716 CTCxTAG C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 162 0 0 13.702792 0.12963 0.02 1.221671 47 7 1364 194 60 60 0 0 CC 21.356943 71 0 2005 0 KEEP + Arid2 NO Spont_2 chr15 98487072 98487072 T A exonic Ddx23 nonsynonymous SNV NM_001080981:c.A278T:p.K93M exonic Ddx23 nonsynonymous SNV uc007xne.1:c.A278T:p.K93M exonic ENSMUSG00000003360 nonsynonymous SNV ENSMUST00000003450:c.A278T:p.K93M 15qF1 NA NA chr15 98487072 TCCxTGT T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 390 4 0 48.696181 0.147239 0.02 3.648217 139 24 3934 668 60 60 0 0 TT 48.417736 161 0 4416 0 KEEP - Ddx23 NO Spont_2 chr16 14465299 14465299 A G exonic Abcc1 nonsynonymous SNV NM_008576:c.A3545G:p.N1182S exonic Abcc1 nonsynonymous SNV uc007yhk.1:c.A452G:p.N151S exonic ENSMUSG00000023088 nonsynonymous SNV ENSMUST00000100167:c.A3545G:p.N1182S 16qA1 NA NA chr16 14465299 AGAxCCA A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490485 0.490544 0.999879 53 0 0 16.763725 0.318182 0.02 -0.20168 15 7 417 194 60 60 0 0 AA 6.616119 22 0 596 0 KEEP + Abcc1 NO Spont_2 chr16 17804414 17804414 C G exonic Scarf2 nonsynonymous SNV NM_153790:c.C1194G:p.C398W exonic Scarf2 nonsynonymous SNV uc007ymd.1:c.C1194G:p.C398W exonic ENSMUSG00000012017 nonsynonymous SNV ENSMUST00000012161:c.C1194G:p.C398W 16qA3 NA NA chr16 17804414 TTGxCCG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 127 2 0 36.02051 0.378378 0.02 -0.324477 23 14 657 400 60 60 0 0 CC 18.345982 61 0 1678 0 KEEP + Scarf2 YES Spont_2 chr16 18252267 18252267 G C exonic Trmt2a nonsynonymous SNV NM_001080999:c.G1252C:p.A418P exonic Trmt2a nonsynonymous SNV uc007ynb.2:c.G1219C:p.A407P exonic ENSMUSG00000022721 nonsynonymous SNV ENSMUST00000014843:c.G1252C:p.A418P 16qA3 NA NA chr16 18252267 TGGxCAC G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138863 0.139832 0.993072 24 0 0 9.891144 0.333333 0.02 -0.105239 8 4 232 113 60 60 0 0 GG 3.253444 11 0 268 0 KEEP + Trmt2a YES Spont_2 chr16 20207899 20207899 A G intronic Yeats2 NA NA intronic Yeats2 NA NA intronic ENSMUSG00000041215 NA NA 16qA3 NA NA chr16 20207899 ATTxCTT A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 109 0 0 23.146634 0.232558 0.02 -0.385803 33 10 888 285 60 60 0 0 AA 13.196282 44 0 1150 0 KEEP + Yeats2 NO Spont_2 chr16 35858294 35858294 C A exonic Parp14 nonsynonymous SNV NM_001039530:c.G1389T:p.Q463H exonic Parp14 nonsynonymous SNV uc007zbs.2:c.G1389T:p.Q463H exonic ENSMUSG00000034422 nonsynonymous SNV ENSMUST00000042665:c.G1389T:p.Q463H 16qB3 NA NA chr16 35858294 ACTxTGC C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 214 4 0 129.399786 0.5 0.02 2.389411 51 51 1503 1358 60 60 0 0 CC 24.366879 81 0 2323 0 KEEP - Parp14 NO Spont_2 chr16 37248001 37248001 G C exonic Stxbp5l nonsynonymous SNV NM_001114611:c.C908G:p.S303C exonic Stxbp5l nonsynonymous SNV uc007zds.2:c.C908G:p.S303C exonic ENSMUSG00000022829 nonsynonymous SNV ENSMUST00000023526:c.C908G:p.S303C 16qB3 NA NA chr16 37248001 CAAxACT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 227 2 0 22.212991 0.107843 0.02 2.692686 91 11 2660 321 60 60 0 0 GG 21.954036 73 0 2093 0 KEEP - Stxbp5l YES Spont_2 chr16 98019319 98019319 G C exonic Prdm15 synonymous SNV NM_144789:c.C2823G:p.S941S exonic Prdm15 synonymous SNV uc008ado.2:c.C342G:p.S114S exonic ENSMUSG00000014039 synonymous SNV ENSMUST00000113740:c.C354G:p.S118S 16qC4 NA NA chr16 98019319 GATxGAA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 226 1 0 30.253375 0.159574 0.02 1.068066 79 15 2304 410 60 60 0 0 GG 23.76377 79 0 2236 0 KEEP - Prdm15 YES Spont_2 chr17 23496748 23496748 T A exonic Vmn2r115 nonsynonymous SNV NM_001104579:c.T2227A:p.S743T exonic Vmn2r115 nonsynonymous SNV uc009vbs.1:c.T2227A:p.S743T exonic ENSMUSG00000091076 nonsynonymous SNV ENSMUST00000168175:c.T2227A:p.S743T 17qA3.3 "Score=0.924606;Name=No.65595,chr17:23572303" NA chr17 23496748 GGTxCAG T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 531 2 12 16.588568 0.051643 0.02 4.259471 202 11 5672 301 60 37 0 0 TT 70.682505 235 0 6518 0 KEEP + Vmn2r115 NO Spont_2 chr17 23952789 23952789 C G exonic Srrm2 nonsynonymous SNV NM_175229:c.C1439G:p.A480G exonic Srrm2 nonsynonymous SNV uc008ato.1:c.C1439G:p.A480G exonic ENSMUSG00000039218 nonsynonymous SNV ENSMUST00000088621:c.C1439G:p.A480G 17qA3.3 NA NA chr17 23952789 CAGxTAG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 115 0 0 33.904323 0.326087 0.02 -0.402343 31 15 900 394 60 60 0 0 CC 15.633755 52 0 1444 0 KEEP + Srrm2 YES Spont_2 chr17 28471638 28471638 G C intronic Tead3 NA NA intronic Tead3 NA NA intronic ENSMUSG00000002249 NA NA 17qA3.3 NA NA chr17 28471638 TAGxCAA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 118 0 0 15.102332 0.155556 0.02 -0.394096 38 7 1074 202 60 60 0 0 GG 15.339325 51 0 1411 0 KEEP - Tead3 YES Spont_2 chr17 29473116 29473116 G T exonic Mtch1 nonsynonymous SNV NM_019880:c.C902A:p.S301Y exonic Mtch1 nonsynonymous SNV uc008bst.1:c.C902A:p.S301Y exonic ENSMUSG00000024012 nonsynonymous SNV ENSMUST00000095427:c.C902A:p.S301Y 17qA3.3 NA NA chr17 29473116 TGGxAAC G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 163 1 0 8.847082 0.096154 0.02 1.141393 47 5 1361 136 60 60 0 0 GG 22.56036 75 0 2127 0 KEEP - Mtch1 NO Spont_2 chr17 29510186 29510186 G T exonic Fgd2 nonsynonymous SNV NM_001159538:c.G1149T:p.E383D exonic Fgd2 nonsynonymous SNV uc008bsy.2:c.G564T:p.E188D exonic ENSMUSG00000024013 nonsynonymous SNV ENSMUST00000024810:c.G1146T:p.E382D 17qA3.3 NA NA chr17 29510186 TGAxTTC G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 162 2 0 11.893502 0.115385 0.02 1.23922 46 6 1302 171 60 60 0 0 GG 25.550867 85 0 2318 0 KEEP + Fgd2 NO Spont_2 chr17 32350103 32350103 T C intronic Brd4 NA NA intronic Brd4 NA NA intronic ENSMUSG00000024002 NA NA 17qB1 NA NA chr17 32350103 CAGxTAA T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 38 0 0 12.767993 0.277778 0.02 -0.157838 13 5 365 150 60 60 0 0 TT 5.414007 18 0 498 0 KEEP - Brd4 NO Spont_2 chr17 35064681 35064681 C T exonic Slc44a4 synonymous SNV NM_023557:c.C1290T:p.G430G exonic Slc44a4 synonymous SNV uc008ceh.2:c.C1290T:p.G430G exonic ENSMUSG00000007034 synonymous SNV ENSMUST00000169230:c.C834T:p.G278G 17qB1 NA NA chr17 35064681 GGGxCTA C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 406 4 0 119.671665 0.305882 0.02 3.685746 118 52 3298 1403 60 60 0 0 CC 52.887157 176 0 4817 0 KEEP + Slc44a4 NO Spont_2 chr17 35197567 35197567 C G exonic Ddah2 nonsynonymous SNV NM_001190449:c.C317G:p.A106G exonic Ddah2 nonsynonymous SNV uc008cfh.2:c.C317G:p.A106G exonic ENSMUSG00000007039 nonsynonymous SNV ENSMUST00000007255:c.C317G:p.A106G 17qB1 NA NA chr17 35197567 AAGxCCT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 110 0 0 15.67229 0.179487 0.02 -0.342022 32 7 914 203 60 60 0 0 CC 14.134998 47 0 1286 0 KEEP + Ddah2 YES Spont_2 chr17 42935527 42935527 A G intronic Cd2ap NA NA intronic Cd2ap NA NA intronic ENSMUSG00000061665 NA NA 17qB3 NA NA chr17 42935527 ATAxAAC A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 309 6 0 95.922209 0.292308 0.02 2.536844 92 38 2633 1119 60 60 0 0 AA 34.891763 116 0 3241 0 KEEP - Cd2ap NO Spont_2 chr17 45684061 45684061 G C exonic Tmem151b nonsynonymous SNV NM_001013749:c.C207G:p.C69W exonic Tmem151b nonsynonymous SNV uc008cqu.2:c.C207G:p.C69W exonic ENSMUSG00000050405 nonsynonymous SNV ENSMUST00000052694:c.C207G:p.C69W 17qB3 NA NA chr17 45684061 CAGxCAG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 90 0 0 18.025322 0.205128 0.02 -0.342032 31 8 899 228 60 60 0 0 GG 11.730549 39 0 1083 0 KEEP - Tmem151b YES Spont_2 chr17 46248025 46248025 C G exonic Mrps18a nonsynonymous SNV NM_026768:c.C59G:p.A20G exonic Mrps18a nonsynonymous SNV uc008crs.1:c.C59G:p.A20G exonic ENSMUSG00000023967 nonsynonymous SNV ENSMUST00000024763:c.C59G:p.A20G 17qC NA NA chr17 46248025 TGGxAGG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 51 0 0 31.330196 0.6875 0.02 -0.140231 5 11 138 304 60 60 0 0 CC 7.46123 25 0 640 0 KEEP + Mrps18a YES Spont_2 chr17 56236716 56236716 C G exonic Hdgfrp2 nonsynonymous SNV NM_008233:c.C979G:p.R327G exonic Hdgfrp2 nonsynonymous SNV uc012avq.1:c.C604G:p.R202G exonic ENSMUSG00000002833 nonsynonymous SNV ENSMUST00000002911:c.C979G:p.R327G 17qD NA NA chr17 56236716 GAGxGAA C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999997 76 0 0 16.28331 0.241379 0.02 -0.254169 22 7 561 199 60 60 0 0 CC 9.608882 32 0 781 0 KEEP + Hdgfrp2 YES Spont_2 chr17 73844943 73844943 T A exonic Galnt14 nonsynonymous SNV NM_027864:c.A1493T:p.Q498L exonic Galnt14 nonsynonymous SNV uc008dnk.2:c.A1493T:p.Q498L exonic ENSMUSG00000024064 nonsynonymous SNV ENSMUST00000024858:c.A1493T:p.Q498L 17qE2 NA NA chr17 73844943 ACCxGCC T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 40 0 0 12.413517 0.294118 0.02 -0.149086 12 5 341 145 60 60 0 0 TT 5.113413 17 0 473 0 KEEP - Galnt14 NO Spont_2 chr17 7932025 7932025 C T UTR3 Fndc1 NA NA UTR3 Fndc1 NA NA UTR3 ENSMUSG00000071984 NA NA 17qA1 NA NA chr17 7932025 TAGxGCA C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 45 0 0 23.687218 0.529412 0.02 -0.149048 8 9 213 245 60 60 0 0 CC 6.312512 21 0 547 0 KEEP - Fndc1 NO Spont_2 chr18 20841415 20841415 A C intergenic "Ttr(dist=8588),B4galt6(dist=1685)" NA NA intergenic "Ttr(dist=8588),B4galt6(dist=1685)" NA NA exonic ENSMUSG00000091449 nonsynonymous SNV ENSMUST00000165229:c.T50G:p.L17R 18qA2 NA NA chr18 20841415 AACxGCT A C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 395 6 55 18.527 0.081481 0.02 2.296157 124 11 3505 298 60 37 0 0 AA 43.85287 150 1 4089 11 KEEP NA Ttr NO Spont_2 chr18 32227643 32227643 C G UTR5 Iws1 NA NA UTR5 Iws1 NA NA UTR5 ENSMUSG00000024384 NA NA 18qB1 NA NA chr18 32227643 CCGxCGA C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612323 0.612407 0.999863 55 0 0 13.481672 0.24 0.02 -0.236695 19 6 531 166 60 60 0 0 CC 6.015585 20 0 554 0 KEEP + Iws1 YES Spont_2 chr18 37251656 37251656 C T exonic Pcdhac1 nonsynonymous SNV NM_001003671:c.C1867T:p.R623C exonic Pcdhac1 nonsynonymous SNV uc008epj.2:c.C1867T:p.R623C exonic ENSMUSG00000007440 nonsynonymous SNV ENSMUST00000007584:c.C1867T:p.R623C 18qB3 NA NA chr18 37251656 GCAxGTT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 81 0 0 13.566767 0.230769 0.02 -0.227864 20 6 496 168 60 60 0 0 CC 11.721471 39 0 994 0 KEEP + Pcdhac1 NO Spont_2 chr18 37456170 37456170 A T exonic Pcdhb2 nonsynonymous SNV NM_053127:c.A1541T:p.Q514L exonic Pcdhb2 nonsynonymous SNV uc008epn.1:c.A1541T:p.Q514L exonic ENSMUSG00000051599 nonsynonymous SNV ENSMUST00000056522:c.A1541T:p.Q514L 18qB3 NA NA chr18 37456170 GGCxGCT A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 319 2 0 16.658998 0.083333 0.02 2.436505 110 10 3106 268 60 60 0 0 AA 49.319895 164 0 4483 0 KEEP + Pcdhb2 NO Spont_2 chr18 47037869 47037869 C G intronic 4833403I15Rik NA NA intronic 4833403I15Rik NA NA intronic ENSMUSG00000024481 NA NA 18qC NA NA chr18 47037869 TCTxACA C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999998 79 0 0 8.518604 0.121212 0.02 -0.289431 29 4 858 119 60 60 0 0 CC 10.228322 34 0 978 0 KEEP + 4833403I15Rik YES Spont_2 chr19 12936423 12936423 G T exonic Olfr1444 nonsynonymous SNV NM_146702:c.G157T:p.D53Y exonic Olfr1444 nonsynonymous SNV uc008gur.1:c.G157T:p.D53Y exonic ENSMUSG00000046272 nonsynonymous SNV ENSMUST00000059675:c.G157T:p.D53Y 19qA NA NA chr19 12936423 TCGxATT G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 148 0 0 12.715379 0.101449 0.02 1.090081 62 7 1826 192 60 60 0 0 GG 17.146613 57 0 1619 0 KEEP + Olfr1444 NO Spont_2 chr19 21753059 21753059 A T exonic Abhd17b stopgain SNV NM_146096:c.A214T:p.R72X exonic "Fam108b,Fam108b1" stopgain SNV uc008gza.1:c.A214T:p.R72X exonic ENSMUSG00000047368 stopgain SNV ENSMUST00000052556:c.A214T:p.R72X 19qB NA NA chr19 21753059 ACAxGAA A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888864 0.888875 0.999988 74 0 0 17.127885 0.2 0.02 -0.359295 32 8 912 220 60 60 0 0 AA 8.121348 27 0 754 0 KEEP + Abhd17b NO Spont_2 chr19 28391796 28391796 C G exonic Glis3 synonymous SNV NM_175459:c.G2091C:p.G697G exonic Glis3 synonymous SNV uc008hch.1:c.G1623C:p.G541G exonic ENSMUSG00000052942 synonymous SNV ENSMUST00000162022:c.G2091C:p.G697G 19qC1 NA NA chr19 28391796 GTGxCCC C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 215 1 0 10.275015 0.065934 0.02 0.995463 85 6 2457 170 60 60 0 0 CC 28.248659 94 0 2569 0 KEEP - Glis3 YES Spont_2 chr19 43885756 43885756 C A intronic Abcc2 NA NA intronic Abcc2 NA NA intronic ENSMUSG00000025194 NA NA 19qC3 NA NA chr19 43885756 GTAxATG C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 96 0 0 9.726285 0.113636 0.02 -0.394648 39 5 1136 141 60 60 0 0 CC 9.926542 33 0 931 0 KEEP + Abcc2 NO Spont_2 chr19 46158563 46158563 A G exonic Nolc1 nonsynonymous SNV NM_001039351:c.A2006G:p.K669R exonic Nolc1 nonsynonymous SNV uc008hsg.1:c.A2009G:p.K670R exonic ENSMUSG00000015176 nonsynonymous SNV ENSMUST00000165017:c.A2012G:p.K671R 19qC3 NA NA chr19 46158563 GCAxGTC A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.290363 0.292001 0.994391 34 0 0 12.51366 0.294118 0.02 -0.14908 12 5 335 146 60 60 0 0 AA 3.910137 13 0 361 0 KEEP + Nolc1 NO Spont_2 chr19 4787772 4787772 G C exonic Rbm4 nonsynonymous SNV NM_009032:c.C683G:p.A228G exonic Rbm4 nonsynonymous SNV uc012bgo.1:c.C608G:p.A203G exonic ENSMUSG00000006456 nonsynonymous SNV ENSMUST00000172000:c.C608G:p.A203G 19qA NA NA chr19 4787772 CGGxCAG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 229 1 0 32.999727 0.126866 0.02 2.411949 117 17 3363 470 60 60 0 0 GG 24.96312 83 0 2310 0 KEEP - Rbm4 YES Spont_2 chr19 50752642 50752642 C T exonic Sorcs1 nonsynonymous SNV NM_001252501:c.G317A:p.G106D exonic Sorcs1 nonsynonymous SNV uc008hwa.2:c.G317A:p.G106D exonic ENSMUSG00000043531 nonsynonymous SNV ENSMUST00000076049:c.G317A:p.G106D 19qD1 NA NA chr19 50752642 CGGxCAG C T 4-Mef-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.386971 0.387407 0.998875 57 0 0 30.971492 0.647059 0.02 -0.174591 6 11 144 305 60 60 0 0 CC 8.420862 28 0 772 0 KEEP - Sorcs1 NO Spont_2 chr19 5143822 5143822 G T exonic Pacs1 nonsynonymous SNV NM_153129:c.C1678A:p.L560I exonic Pacs1 nonsynonymous SNV uc008gcj.1:c.C1678A:p.L560I exonic ENSMUSG00000024855 nonsynonymous SNV ENSMUST00000164003:c.C1279A:p.L427I 19qA NA NA chr19 5143822 GGAxGGC G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 691 10 0 56.379787 0.094955 0.02 7.101758 305 32 8857 869 60 60 0 0 GG 63.392387 215 1 6024 11 KEEP - Pacs1 NO Spont_2 chr19 5307358 5307358 C G exonic Gal3st3 nonsynonymous SNV NM_001024717:c.C760G:p.L254V exonic Gal3st3 nonsynonymous SNV uc008gco.2:c.C760G:p.L254V exonic ENSMUSG00000047658 nonsynonymous SNV ENSMUST00000061169:c.C760G:p.L254V 19qA NA NA chr19 5307358 CGTxTAC C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 151 4 0 11.789338 0.107143 0.02 1.293648 50 6 1460 172 60 60 0 0 CC 18.04831 60 0 1709 0 KEEP + Gal3st3 YES Spont_2 chr19 57121545 57121545 T A exonic Ablim1 synonymous SNV NM_001103178:c.A909T:p.A303A exonic Ablim1 synonymous SNV uc009vbz.1:c.A909T:p.A303A exonic ENSMUSG00000025085 synonymous SNV ENSMUST00000111526:c.A474T:p.A158A 19qD2 NA NA chr19 57121545 GGCxGCC T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 85 0 0 16.23623 0.212121 0.02 -0.289405 26 7 743 203 60 60 0 0 TT 10.526718 35 0 962 0 KEEP - Ablim1 NO Spont_2 chr19 6250377 6250377 G C intronic Atg2a NA NA intronic Atg2a NA NA intronic ENSMUSG00000024773 NA NA 19qA NA NA chr19 6250377 GAGxCAG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992924 0.992926 0.999999 117 0 0 11.654711 0.098361 0.02 1.133977 55 6 1576 173 60 60 0 0 GG 10.523275 35 0 943 0 KEEP + Atg2a YES Spont_2 chr19 6306756 6306756 G C exonic Cdc42bpg nonsynonymous SNV NM_001033342:c.G41C:p.G14A exonic Cdc42bpg nonsynonymous SNV uc008gia.2:c.G41C:p.G14A exonic ENSMUSG00000024769 nonsynonymous SNV ENSMUST00000025681:c.G41C:p.G14A 19qA NA NA chr19 6306756 GGGxCGA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.640941 0.641347 0.999366 54 0 0 16.63051 0.259259 0.02 -0.244194 20 7 574 200 60 60 0 0 GG 5.111626 17 0 464 0 KEEP + Cdc42bpg YES Spont_2 chr19 6405058 6405058 C G intronic Rasgrp2 NA NA intronic Rasgrp2 NA NA intronic ENSMUSG00000032946 NA NA 19qA NA NA chr19 6405058 GTGxCTG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 107 0 0 22.158873 0.181818 0.02 1.410581 45 10 1272 287 60 60 0 0 CC 11.124904 37 0 1021 0 KEEP + Rasgrp2 YES Spont_2 chr1 12555759 12555759 C T intergenic "A830018L16Rik(dist=589776),Gm17644(dist=101885)" NA NA intergenic "A830018L16Rik(dist=589776),Sulf1(dist=126752)" NA NA intergenic "ENSMUSG00000064969(dist=190636),ENSMUSG00000066918(dist=101885)" NA NA 1qA3 "Score=0.95476;Name=No.3162,chr7:59001996" NA chr1 12555759 CAAxGAC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 778 13 52 43.428863 0.082019 0.02 6.674718 291 26 7539 700 60 41 0 0 CC 92.499746 312 1 7862 11 KEEP NA A830018L16Rik NO Spont_2 chr1 134901306 134901306 G C intronic Mdm4 NA NA ncRNA_intronic Mdmx NA NA intronic ENSMUSG00000054387 NA NA 1qE4 NA NA chr1 134901306 ATAxCAA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 101 0 0 19.164485 0.235294 0.02 -0.298058 26 8 729 234 60 60 0 0 GG 15.039136 50 0 1391 0 KEEP - Mdm4 YES Spont_2 chr1 135522421 135522421 T G intronic Zc3h11a NA NA intronic Zc3h11a NA NA intronic ENSMUSG00000026464 NA NA 1qE4 NA NA chr1 135522421 AACxTAC T G 4-Mef-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.818458 0.818465 0.999992 93 1 0 20.733604 0.277778 0.02 -0.315658 26 10 749 252 60 60 0 0 TT 12.030297 40 0 1112 0 KEEP - Zc3h11a NO Spont_2 chr1 138047814 138047814 C G exonic Kif21b nonsynonymous SNV NM_001039472:c.C1322G:p.A441G exonic Kif21b nonsynonymous SNV uc007cul.1:c.C1322G:p.A441G exonic ENSMUSG00000041642 nonsynonymous SNV ENSMUST00000075164:c.C1322G:p.A441G 1qE4 NA NA chr1 138047814 AGGxCAT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 92 0 0 10.175163 0.131579 0.02 -0.331799 33 5 915 142 60 60 0 0 CC 9.899472 33 0 893 0 KEEP + Kif21b YES Spont_2 chr1 158296325 158296325 T C intergenic "Nphs2(dist=38159),Soat1(dist=61914)" NA NA intronic 9430070O13Rik NA NA exonic ENSMUSG00000078193 synonymous SNV ENSMUST00000102782:c.T117C:p.G39G 1qG3 NA NA chr1 158296325 CGGxGCC T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999957 1 0.999957 205 6 10 51.766781 0.184397 0.02 2.2533 115 26 3049 686 60 43 0 0 TT 7.818761 26 0 700 0 KEEP - Nphs2 NO Spont_2 chr1 164638047 164638047 C G exonic Prrc2c nonsynonymous SNV NM_001081290:c.G2273C:p.S758T exonic Prrc2c nonsynonymous SNV uc007dgr.1:c.G2273C:p.S758T exonic ENSMUSG00000040225 nonsynonymous SNV ENSMUST00000028016:c.G2273C:p.S758T 1qH2.1 NA NA chr1 164638047 GAGxTAT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 72 0 0 10.840704 0.16129 0.02 -0.280635 26 5 744 144 60 60 0 0 CC 8.723277 29 0 817 0 KEEP - Prrc2c YES Spont_2 chr1 180034226 180034226 C T intergenic "Gm16432(dist=55804),Desi2(dist=83322)" NA NA ncRNA_exonic EG545391 NA NA exonic ENSMUSG00000066667 nonsynonymous SNV ENSMUST00000111149:c.C1048T:p.L350F 1qH4 "Score=0.946144;Name=No.519,chr1:179767643" NA chr1 180034226 GTCxTTA C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229028 0.229173 0.999366 44 3 1 19.337798 0.466667 0.02 -0.131557 8 7 236 205 60 37 0 0 CC 5.109775 17 0 477 0 KEEP + Gm16432 NO Spont_2 chr1 184378624 184378624 G C exonic Trp53bp2 nonsynonymous SNV NM_173378:c.G2038C:p.E680Q exonic Trp53bp2 nonsynonymous SNV uc007dyd.1:c.G1120C:p.E374Q exonic ENSMUSG00000026510 nonsynonymous SNV ENSMUST00000117245:c.G2038C:p.E680Q 1qH5 NA NA chr1 184378624 CCGxAGC G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 102 0 0 7.080239 0.085106 0.02 -0.419979 43 4 1229 111 60 60 0 0 GG 11.719302 39 0 1070 0 KEEP + Trp53bp2 YES Spont_2 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 50 0 0 21.713421 0.533333 0.02 -0.140316 7 8 206 224 60 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO Spont_2 chr1 25589356 25589356 C A exonic Bai3 nonsynonymous SNV NM_175642:c.G1324T:p.A442S exonic Bai3 nonsynonymous SNV uc007amw.2:c.G1324T:p.A442S exonic ENSMUSG00000033569 nonsynonymous SNV ENSMUST00000041838:c.G1324T:p.A442S 1qA5 NA NA chr1 25589356 CAGxCCA C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.19521 0.196312 0.994391 30 0 0 9.371262 0.285714 0.02 -0.122773 10 4 285 111 60 60 0 0 CC 3.905788 13 0 349 0 KEEP - Bai3 NO Spont_2 chr1 36598802 36598802 C G exonic Ankrd39 nonsynonymous SNV NM_026241:c.G310C:p.A104P exonic Ankrd39 nonsynonymous SNV uc007aqo.1:c.G310C:p.A104P exonic ENSMUSG00000079610 nonsynonymous SNV ENSMUST00000001172:c.G310C:p.A104P 1qB NA NA chr1 36598802 TGGxCCG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 110 0 0 23.006148 0.25 0.02 -0.350666 30 10 840 280 60 60 0 0 CC 14.736758 49 0 1345 0 KEEP - Ankrd39 YES Spont_2 chr1 74175607 74175607 G T exonic Rufy4 nonsynonymous SNV NM_001170641:c.G239T:p.G80V exonic Rufy4 nonsynonymous SNV uc011wmy.1:c.G239T:p.G80V exonic ENSMUSG00000061815 nonsynonymous SNV ENSMUST00000127134:c.G239T:p.G80V 1qC3 NA NA chr1 74175607 GGGxATA G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 165 4 0 20.187853 0.186441 0.02 1.072545 48 11 1393 272 60 60 0 0 GG 21.6654 74 1 2072 5 KEEP + Rufy4 NO Spont_2 chr1 75502058 75502058 G C exonic Obsl1 nonsynonymous SNV NM_178884:c.C742G:p.L248V exonic Obsl1 nonsynonymous SNV uc007bpn.2:c.C742G:p.L248V exonic ENSMUSG00000026211 nonsynonymous SNV ENSMUST00000113565:c.C742G:p.L248V 1qC4 NA NA chr1 75502058 TGAxCGG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 140 2 0 29.181917 0.2 0.02 1.125187 52 13 1498 371 60 60 0 0 GG 15.370736 55 1 1486 10 KEEP - Obsl1 YES Spont_2 chr1 89661877 89661877 C T intronic Atg16l1 NA NA intronic "APG16L,Atg16l1" NA NA intronic ENSMUSG00000026289 NA NA 1qD NA NA chr1 89661877 GTCxTTT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229143 0.229173 0.999869 40 0 0 9.73119 0.266667 0.02 -0.131555 11 4 322 116 60 60 0 0 CC 6.316399 21 0 586 0 KEEP + Atg16l1 NO Spont_2 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 495 2 0 33.858376 0.072289 0.02 6.903073 231 18 6191 533 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO Spont_2 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 574 1 0 47.388347 0.08254 0.02 7.694995 289 26 8401 739 70 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 NO Spont_2 chr1 90112835 90112835 C T exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1207T:p.R403C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1198T:p.R400C exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1201T:p.R401C 1qD NA NA chr1 90112835 AAGxGCA C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 189 0 0 18.053847 0.108696 0.02 0.790718 82 10 2265 270 60 60 0 0 CC 18.044386 60 0 1644 0 KEEP + Ugt1a1 NO Spont_2 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 208 0 0 20.789039 0.11828 0.02 0.880313 82 11 2124 302 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 YES Spont_2 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 200 2 0 20.368238 0.111111 0.02 0.827159 88 11 2558 301 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO Spont_2 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 466 2 0 27.027515 0.071429 0.02 5.082242 195 15 5377 433 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO Spont_2 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 510 4 0 39.512135 0.090551 0.02 5.43212 231 23 6690 620 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a NO Spont_2 chr1 90142592 90142592 C T exonic Mroh2a synonymous SNV NM_001281466:c.C2586T:p.H862H exonic Heatr7b1 synonymous SNV uc011wov.1:c.C2595T:p.H865H exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.C2586T:p.H862H 1qD NA NA chr1 90142592 CCAxTTG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 504 5 0 13.636487 0.041152 0.02 6.338955 233 10 6716 269 60 60 0 0 CC 47.181285 157 0 4345 0 KEEP + Mroh2a NO Spont_2 chr1 90145105 90145105 G A intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90145105 TCTxTGT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 189 2 0 15.859647 0.098901 0.02 2.096706 82 9 2411 243 60 60 0 0 GG 15.641541 52 0 1481 0 KEEP + Mroh2a NO Spont_2 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 292 0 0 21.861225 0.081081 0.02 3.745663 136 12 3989 342 70 60 0 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a NO Spont_2 chr1 90147949 90147949 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3319T:p.R1107W exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3328T:p.R1110W exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3319T:p.R1107W 1qD NA NA chr1 90147949 ATGxGGG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 250 0 0 9.189739 0.050847 0.02 1.959561 112 6 2782 166 70 60 0 0 CC 28.221001 94 0 2168 0 KEEP + Mroh2a NO Spont_2 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 264 2 0 15.462305 0.066667 0.02 2.297339 126 9 3455 255 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO Spont_2 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998463 0.998465 0.999998 129 0 0 26.402087 0.173333 0.02 0.940648 62 13 1747 352 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a NO Spont_2 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 197 0 0 11.693574 0.066667 0.02 2.363822 98 7 2662 195 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO Spont_2 chr1 90161760 90161760 G A exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.C1772T:p.P591L exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc011wow.1:c.C1376T:p.P459L exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000100097:c.C473T:p.P158L 1qD NA NA chr1 90161760 CAGxGCC G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 117 1 0 16.90601 0.148148 0.02 1.269785 46 8 1274 229 60 60 0 0 GG 11.731581 39 0 1104 0 KEEP - A730008H23Rik NO Spont_2 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 523 4 0 38.722565 0.090129 0.02 4.955102 212 21 5628 593 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP - A730008H23Rik NO Spont_2 chr1 94387932 94387932 T C exonic Olfr1415 synonymous SNV NM_001011525:c.A399G:p.Q133Q exonic Olfr1415 synonymous SNV uc007cbj.1:c.A399G:p.Q133Q exonic ENSMUSG00000057464 synonymous SNV ENSMUST00000071521:c.A399G:p.Q133Q 1qD "Score=0.958743;Name=No.343,chr1:94376292" NA chr1 94387932 GACxTGG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 140 0 0 51.116175 0.344828 0.02 1.38354 38 20 1079 578 60 60 0 0 TT 19.51383 65 0 1768 0 KEEP - Olfr1415 NO Spont_2 chr1 9536938 9536938 G T UTR3 Rrs1 NA NA UTR3 Rrs1 NA NA UTR3 ENSMUSG00000061024 NA NA 1qA2 "Score=0.945286;Name=No.2295,chr5:26333437" NA chr1 9536938 CTTxACT G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 444 15 5 21.66765 0.066327 0.02 3.447548 183 13 5437 362 60 37 0 0 GG 41.529006 148 1 4229 28 KEEP + Rrs1 NO Spont_2 chr2 109515455 109515455 G T UTR5 Bdnf NA NA UTR5 Bdnf NA NA UTR5 ENSMUSG00000048482 NA NA 2qE3 NA NA chr2 109515455 CAAxATT G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 121 3 0 21.107268 0.208333 0.02 -0.420971 38 10 1134 270 60 60 0 0 GG 14.733648 49 0 1397 0 KEEP + Bdnf NO Spont_2 chr2 112510313 112510313 A G intronic Ryr3 NA NA intronic Ryr3 NA NA intronic ENSMUSG00000057378 NA NA 2qE3 NA NA chr2 112510313 ATGxCAG A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 251 0 0 42.400534 0.182692 0.02 2.872322 85 19 2414 548 60 60 0 0 AA 30.060956 100 0 2741 0 KEEP - Ryr3 NO Spont_2 chr2 117944917 117944917 G C exonic Thbs1 nonsynonymous SNV NM_011580:c.G1751C:p.G584A exonic Thbs1 nonsynonymous SNV uc008lrq.1:c.G1751C:p.G584A exonic ENSMUSG00000040152 nonsynonymous SNV ENSMUST00000039559:c.G1751C:p.G584A 2qE5 NA NA chr2 117944917 ATGxCAT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 131 0 0 41.627377 0.298246 0.02 1.293653 40 17 1147 486 60 60 0 0 GG 16.242068 54 0 1501 0 KEEP + Thbs1 YES Spont_2 chr2 118752681 118752681 G T exonic Chst14 synonymous SNV NM_028117:c.G294T:p.G98G exonic Chst14 synonymous SNV uc012cbn.1:c.G294T:p.G98G exonic ENSMUSG00000074916 synonymous SNV ENSMUST00000099546:c.G294T:p.G98G 2qE5 NA NA chr2 118752681 TGGxGAC G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 100 2 0 7.196866 0.090909 0.02 -0.402007 40 4 1138 111 60 60 0 0 GG 11.425183 38 0 1048 0 KEEP + Chst14 NO Spont_2 chr2 119159817 119159817 C G exonic Dll4 nonsynonymous SNV NM_019454:c.C1980G:p.C660W exonic Dll4 nonsynonymous SNV uc008ltr.2:c.C1980G:p.C660W exonic ENSMUSG00000027314 nonsynonymous SNV ENSMUST00000102517:c.C1980G:p.C660W 2qE5 NA NA chr2 119159817 TTGxTCT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 102 0 0 12.03336 0.130435 0.02 -0.412187 40 6 1163 169 60 70 0 0 CC 12.031852 40 0 1125 0 KEEP + Dll4 YES Spont_2 chr2 121900216 121900216 A G intronic Spg11 NA NA intronic Spg11 NA NA intronic ENSMUSG00000033396 NA NA 2qE5 NA NA chr2 121900216 AAGxGGC A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 122 0 0 7.773266 0.085106 0.02 -0.412172 43 4 1232 118 60 60 0 0 AA 15.924169 53 0 1451 0 KEEP - Spg11 NO Spont_2 chr2 136581895 136581895 G C exonic Snap25 nonsynonymous SNV NM_011428:c.G30C:p.E10D exonic Snap25 nonsynonymous SNV uc008mop.1:c.G30C:p.E10D exonic ENSMUSG00000027273 nonsynonymous SNV ENSMUST00000028727:c.G30C:p.E10D 2qF3 NA NA chr2 136581895 TGAxCTG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 95 0 0 9.42816 0.113636 0.02 -0.385877 39 5 1136 138 60 60 0 0 GG 9.324952 31 0 874 0 KEEP + Snap25 YES Spont_2 chr2 150091919 150091919 T G exonic Gm14124 nonsynonymous SNV NM_001142410:c.T62G:p.L21R exonic Gm14124 nonsynonymous SNV uc012cft.1:c.T62G:p.L21R exonic ENSMUSG00000079008 nonsynonymous SNV ENSMUST00000109920:c.T59G:p.L20R 2qG3 "Score=0.967056;Name=No.75374,chr2:150005238" NA chr2 150091919 TGCxGGA T G 4-Mef-R-P_1 7-E185-R-P_1 0 DBSNP COVERED 0.999895 0.999895 1 222 0 1 12.568045 0.075269 0.02 0.879636 86 7 2458 200 60 60 0 0 TT 23.759844 79 0 2168 0 KEEP + Gm14124 NO Spont_2 chr2 153029509 153029509 T C intronic Tm9sf4 NA NA intronic Tm9sf4 NA NA intronic ENSMUSG00000068040 NA NA 2qH1 NA NA chr2 153029509 TGGxGCC T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 68 0 0 13.281423 0.24 0.02 -0.2192 19 6 521 164 60 60 0 0 TT 10.20921 34 0 899 0 KEEP + Tm9sf4 NO Spont_2 chr2 157294960 157294960 G C exonic Src nonsynonymous SNV NM_001025395:c.G1213C:p.A405P exonic Src nonsynonymous SNV uc008npb.1:c.G1213C:p.A405P exonic ENSMUSG00000027646 nonsynonymous SNV ENSMUST00000109529:c.G1231C:p.A411P 2qH1 NA NA chr2 157294960 GTGxCCG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 99 0 0 29.728108 0.270833 0.02 -0.420833 35 13 990 357 60 60 0 0 GG 12.627435 42 0 1147 0 KEEP + Src YES Spont_2 chr2 163993558 163993558 G C exonic Kcns1 nonsynonymous SNV NM_008435:c.C1016G:p.A339G exonic Kcns1 nonsynonymous SNV uc008ntv.1:c.C1016G:p.A339G exonic ENSMUSG00000040164 nonsynonymous SNV ENSMUST00000045196:c.C1016G:p.A339G 2qH3 NA NA chr2 163993558 GTGxCGC G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 95 2 0 29.533395 0.315789 0.02 -0.333253 26 12 750 341 60 60 0 0 GG 11.730783 39 0 1089 0 KEEP - Kcns1 YES Spont_2 chr2 172074867 172074867 G A exonic Mc3r nonsynonymous SNV NM_008561:c.G508A:p.V170I exonic Mc3r nonsynonymous SNV uc008ocl.1:c.G508A:p.V170I exonic ENSMUSG00000038537 nonsynonymous SNV ENSMUST00000038532:c.G508A:p.V170I 2qH3 NA NA chr2 172074867 TGGxTCT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 206 3 0 144.758188 0.55 0.02 0.917979 45 55 1245 1484 60 60 0 0 GG 24.060873 80 0 2197 0 KEEP + Mc3r NO Spont_2 chr2 172814919 172814919 A G intronic Spo11 NA NA intronic Spo11 NA NA intronic ENSMUSG00000005883 NA NA 2qH3 NA NA chr2 172814919 GAAxAGC A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 98 0 0 10.173775 0.111111 0.02 -0.403396 40 5 1138 146 60 60 0 0 AA 11.429457 38 0 1052 0 KEEP + Spo11 NO Spont_2 chr2 18314023 18314023 C A exonic Dnajc1 synonymous SNV NM_001190817:c.G105T:p.L35L exonic "Dnajc1,MTJ1" synonymous SNV uc008ilt.2:c.G105T:p.L35L exonic ENSMUSG00000026740 synonymous SNV ENSMUST00000028072:c.G105T:p.L35L 2qA3 NA NA chr2 18314023 TGCxAGC C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.52183 0.522161 0.999366 45 0 0 31.493819 0.5 0.02 -0.210431 12 12 349 330 60 60 0 0 CC 4.813113 16 0 455 0 KEEP - Dnajc1 NO Spont_2 chr2 24806986 24806986 T C intronic Zmynd19 NA NA intronic Zmynd19 NA NA intronic ENSMUSG00000026974 NA NA 2qA3 NA NA chr2 24806986 TTCxTTT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 120 0 0 21.652331 0.181818 0.02 1.3112 45 10 1306 282 60 60 0 0 TT 12.934332 43 0 1205 0 KEEP + Zmynd19 NO Spont_2 chr2 25231891 25231891 A G exonic Sapcd2 nonsynonymous SNV NM_001081085:c.A1169G:p.E390G exonic "2010317E24Rik,Ang" nonsynonymous SNV uc008irt.1:c.A1232G:p.E411G exonic ENSMUSG00000026955 nonsynonymous SNV ENSMUST00000100323:c.A1232G:p.E411G 2qA3 NA NA chr2 25231891 GTGxGCG A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 141 0 0 9.07761 0.078125 0.02 1.134575 59 5 1655 143 60 60 0 0 AA 19.817719 66 0 1821 0 KEEP + Sapcd2 NO Spont_2 chr2 27888346 27888346 T C splicing Col5a1(NM_015734:exon65:c.5370+2T>C) NA NA splicing Col5a1(uc008ixt.2:exon65:c.5370+2T>C) NA NA splicing "ENSMUSG00000026837(ENSMUST00000028280:exon65:c.5370+2T>C,ENSMUST00000145423:exon6:c.903+2T>C)" NA NA 2qA3 NA NA chr2 27888346 CTGxGAG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 29 0 0 8.59011 0.333333 0.02 -0.105208 8 4 225 100 60 60 0 0 TT 4.510994 15 0 405 0 KEEP + Col5a1 NO Spont_2 chr2 28435198 28435198 G C exonic Gtf3c5 nonsynonymous SNV NM_148928:c.C213G:p.C71W exonic Gtf3c5 nonsynonymous SNV uc008iys.2:c.C213G:p.C71W exonic ENSMUSG00000026816 nonsynonymous SNV ENSMUST00000028157:c.C213G:p.C71W 2qA3 NA NA chr2 28435198 GTGxCAG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909058 0.909069 0.999988 87 1 0 26.561474 0.261905 0.02 -0.377064 31 11 880 318 60 60 0 0 GG 8.059284 27 0 729 0 KEEP - Gtf3c5 YES Spont_2 chr2 30186122 30186122 G T exonic Nup188 nonsynonymous SNV NM_198304:c.G2686T:p.A896S exonic Nup188 nonsynonymous SNV uc008jcb.1:c.G2686T:p.A896S exonic ENSMUSG00000052533 nonsynonymous SNV ENSMUST00000064447:c.G2686T:p.A896S 2qB NA NA chr2 30186122 GCGxCCA G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 206 4 0 47.691222 0.259259 0.02 0.984893 60 21 1734 578 60 60 0 0 GG 22.388559 82 1 2265 21 KEEP + Nup188 NO Spont_2 chr2 30679906 30679906 G T exonic Asb6 stopgain SNV NM_133346:c.C711A:p.C237X exonic Asb6 stopgain SNV uc008jcx.1:c.C711A:p.C237X exonic ENSMUSG00000039483 stopgain SNV ENSMUST00000041726:c.C711A:p.C237X 2qB NA NA chr2 30679906 GAAxCAG G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 445 12 0 37.00634 0.106383 0.02 3.402449 168 20 4852 551 60 60 0 0 GG 49.630743 165 0 4645 0 KEEP - Asb6 NO Spont_2 chr2 35568740 35568740 T G exonic Dab2ip nonsynonymous SNV NM_001001602:c.T1235G:p.L412R exonic Dab2ip nonsynonymous SNV uc008jkv.2:c.T452G:p.L151R exonic ENSMUSG00000026883 nonsynonymous SNV ENSMUST00000028246:c.T851G:p.L284R 2qB NA NA chr2 35568740 AGCxGGC T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 205 2 0 37.247571 0.216867 0.02 1.065735 65 18 1851 475 60 60 0 0 TT 24.662839 82 0 2261 0 KEEP + Dab2ip NO Spont_2 chr2 44852146 44852146 T C exonic Zeb2 synonymous SNV NM_015753:c.A2286G:p.K762K exonic Zeb2 synonymous SNV uc008jpc.1:c.A2271G:p.K757K exonic ENSMUSG00000026872 synonymous SNV ENSMUST00000028229:c.A2286G:p.K762K 2qB NA NA chr2 44852146 AGAxTTT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 102 0 0 34.198085 0.291667 0.02 -0.429685 34 14 948 401 60 60 0 0 TT 13.834733 46 0 1255 0 KEEP - Zeb2 NO Spont_2 chr2 6468171 6468171 C G exonic Celf2 synonymous SNV NM_010160:c.G1398C:p.V466V exonic Celf2 synonymous SNV uc008ign.1:c.G678C:p.V226V exonic ENSMUSG00000002107 synonymous SNV ENSMUST00000168146:c.G678C:p.V226V 2qA1 NA NA chr2 6468171 CTGxACC C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 87 0 0 22.06188 0.264706 0.02 -0.298183 25 9 726 263 60 60 0 0 CC 11.129776 37 0 1044 0 KEEP - Celf2 YES Spont_2 chr2 85824623 85824623 G T exonic Olfr1030 nonsynonymous SNV NM_146588:c.G625T:p.A209S exonic Olfr1030 nonsynonymous SNV uc008klh.2:c.G625T:p.A209S exonic ENSMUSG00000044923 nonsynonymous SNV ENSMUST00000056849:c.G625T:p.A209S 2qD NA NA chr2 85824623 GTAxCAG G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 150 0 0 20.418523 0.149254 0.02 1.206056 57 10 1650 279 60 60 0 0 GG 18.001257 60 0 1649 0 KEEP + Olfr1030 NO Spont_2 chr2 89833757 89833757 C A exonic Olfr1261 nonsynonymous SNV NM_146474:c.C206A:p.S69Y exonic Olfr1261 nonsynonymous SNV uc008ksg.1:c.C206A:p.S69Y exonic ENSMUSG00000061295 nonsynonymous SNV ENSMUST00000077785:c.C206A:p.S69Y 2qE1 NA NA chr2 89833757 ACTxTTC C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 227 2 0 76.250424 0.298246 0.02 2.293138 80 34 2329 902 60 60 0 0 CC 28.277999 94 0 2693 0 KEEP + Olfr1261 NO Spont_2 chr2 90749695 90749695 A T exonic Kbtbd4 nonsynonymous SNV NM_025991:c.A1218T:p.E406D exonic Kbtbd4 nonsynonymous SNV uc008kts.1:c.A1266T:p.E422D exonic ENSMUSG00000005505 nonsynonymous SNV ENSMUST00000090682:c.A1218T:p.E406D 2qE1 NA NA chr2 90749695 AGAxACT A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973898 0.973965 0.999931 95 0 0 28.462326 0.240741 0.02 1.123828 41 13 1156 352 60 60 0 0 AA 7.515485 25 0 687 0 KEEP + Kbtbd4 NO Spont_2 chr2 90885633 90885633 C G exonic Rapsn nonsynonymous SNV NM_009023:c.C1197G:p.C399W exonic Rapsn nonsynonymous SNV uc012bzc.1:c.C1038G:p.C346W exonic ENSMUSG00000002104 nonsynonymous SNV ENSMUST00000111445:c.C1020G:p.C340W 2qE1 NA NA chr2 90885633 CTGxCCC C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 102 2 0 22.782362 0.243902 0.02 -0.359472 31 10 878 279 60 60 0 0 CC 12.028998 40 0 1092 0 KEEP + Rapsn YES Spont_2 chr2 97788790 97788790 C G intergenic "Lrrc4c(dist=316969),NONE(dist=NONE)" NA NA intergenic "Lrrc4c(dist=316969),NONE(dist=NONE)" NA NA downstream ENSMUSG00000082820 NA NA 2qE1 "Score=0.98569;Name=No.75174,chr2:73121886" NA chr2 97788790 GAAxTCT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 410 3 185 29.394386 0.220339 0.02 1.276102 46 13 1341 367 36 36 0 0 CC 48.430647 161 0 4562 0 KEEP NA Lrrc4c YES Spont_2 chr3 106191636 106191636 C T exonic BC051070 synonymous SNV NM_178412:c.G1200A:p.L400L exonic BC051070 synonymous SNV uc008qvy.1:c.G1200A:p.L400L exonic ENSMUSG00000027902 synonymous SNV ENSMUST00000029510:c.G1200A:p.L400L 3qF2.3 NA NA chr3 106191636 CTTxAAG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 68 0 0 63.834582 0.84 0.02 -0.219234 4 21 121 586 60 60 0 0 CC 9.626672 32 0 920 0 KEEP - BC051070 NO Spont_2 chr3 115820272 115820272 A T exonic Vcam1 nonsynonymous SNV NM_011693:c.T1394A:p.I465N exonic Vcam1 nonsynonymous SNV uc008rbx.1:c.T1394A:p.I465N exonic ENSMUSG00000027962 nonsynonymous SNV ENSMUST00000029574:c.T1394A:p.I465N 3qG1 NA NA chr3 115820272 AAAxTTT A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 115 0 0 7.279628 0.095238 0.02 -0.368283 38 4 1049 111 60 60 0 0 AA 18.009726 60 0 1599 0 KEEP - Vcam1 NO Spont_2 chr3 129577836 129577836 C T intronic Cfi NA NA intronic Cfi NA NA intronic ENSMUSG00000058952 NA NA 3qG3 NA NA chr3 129577836 TCTxAGG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387372 0.387407 0.999909 52 0 0 8.663698 0.2 0.02 -0.175403 16 4 470 111 60 60 0 0 CC 7.220148 24 0 693 0 KEEP + Cfi NO Spont_2 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.69366 0.693668 0.999988 66 3 0 18.399596 0.275862 0.02 -0.263083 21 8 601 220 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO Spont_2 chr3 36452877 36452877 C G intronic Exosc9 NA NA intronic Exosc9 NA NA intronic ENSMUSG00000027714 NA NA 3qB NA NA chr3 36452877 TAGxCAT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353932 0.353947 0.999957 50 0 0 11.840383 0.263158 0.02 -0.166067 14 5 374 142 60 60 0 0 CC 7.803957 26 0 691 0 KEEP + Exosc9 YES Spont_2 chr3 65752432 65752432 A G exonic Ccnl1 nonsynonymous SNV NM_019937:c.T883C:p.Y295H exonic Ccnl1 nonsynonymous SNV uc008pku.1:c.T883C:p.Y295H exonic ENSMUSG00000027829 nonsynonymous SNV ENSMUST00000029416:c.T883C:p.Y295H 3qE1 NA NA chr3 65752432 TATxAAG A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 164 3 0 47.121806 0.346154 0.02 1.436154 34 18 959 531 60 60 0 0 AA 24.36177 81 0 2223 0 KEEP - Ccnl1 NO Spont_2 chr3 65752433 65752433 A C exonic Ccnl1 synonymous SNV NM_019937:c.T882G:p.L294L exonic Ccnl1 synonymous SNV uc008pku.1:c.T882G:p.L294L exonic ENSMUSG00000027829 synonymous SNV ENSMUST00000029416:c.T882G:p.L294L 3qE1 NA NA chr3 65752433 ATAxAGT A C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 164 3 0 46.821262 0.346154 0.02 1.436136 34 18 978 528 60 60 0 0 AA 24.061502 80 0 2222 0 KEEP - Ccnl1 NO Spont_2 chr3 87735769 87735769 T C exonic Isg20l2 nonsynonymous SNV NM_177663:c.T364C:p.F122L exonic Isg20l2 nonsynonymous SNV uc008ptj.1:c.T364C:p.F122L exonic ENSMUSG00000048039 nonsynonymous SNV ENSMUST00000055984:c.T364C:p.F122L 3qF1 "Score=0.941803;Name=No.83098,chr6:128925684" NA chr3 87735769 GAGxTTC T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 110 0 0 7.735374 0.093023 0.02 -0.377006 39 4 1060 116 60 22 0 0 TT 17.125565 57 0 1490 0 KEEP + Isg20l2 NO Spont_2 chr3 87735826 87735826 T C exonic Isg20l2 nonsynonymous SNV NM_177663:c.T421C:p.S141P exonic Isg20l2 nonsynonymous SNV uc008ptj.1:c.T421C:p.S141P exonic ENSMUSG00000048039 nonsynonymous SNV ENSMUST00000055984:c.T421C:p.S141P 3qF1 "Score=0.941803;Name=No.83098,chr6:128925684" NA chr3 87735826 AAGxCCT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 191 0 0 10.883968 0.092308 0.02 1.027401 59 6 1614 167 60 22 0 0 TT 30.104881 110 1 2976 28 KEEP + Isg20l2 NO Spont_2 chr3 87827824 87827824 G C exonic Hapln2 nonsynonymous SNV NM_022031:c.C305G:p.A102G exonic Hapln2 nonsynonymous SNV uc008ptq.2:c.C305G:p.A102G exonic ENSMUSG00000004894 nonsynonymous SNV ENSMUST00000005014:c.C305G:p.A102G 3qF1 NA NA chr3 87827824 CTGxCGC G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162452 0.162467 0.999909 41 0 0 16.064968 0.461538 0.02 -0.114008 7 6 201 171 60 60 0 0 GG 7.218432 24 0 662 0 KEEP - Hapln2 YES Spont_2 chr3 90045911 90045911 C T exonic Creb3l4 synonymous SNV NM_030080:c.G411A:p.S137S exonic Creb3l4 synonymous SNV uc008qbp.1:c.G246A:p.S82S exonic ENSMUSG00000027938 synonymous SNV ENSMUST00000029547:c.G411A:p.S137S 3qF1 NA NA chr3 90045911 ATGxGAA C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 127 0 0 119.528641 0.866667 0.02 -0.394563 6 39 147 1086 60 60 0 0 CC 17.720598 59 0 1419 0 KEEP - Creb3l4 NO Spont_2 chr3 93248220 93248220 T C exonic Tchh synonymous SNV NM_001163098:c.T1044C:p.R348R exonic Tchh synonymous SNV uc012cti.1:c.T1044C:p.R348R exonic ENSMUSG00000052415 synonymous SNV ENSMUST00000064257:c.T1044C:p.R348R 3qF2.1 NA NA chr3 93248220 GCGxGAG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 111 2 0 55.888038 0.8 0.02 -0.219131 5 20 140 518 60 60 0 0 TT 17.17073 65 1 1739 22 KEEP + Tchh NO Spont_2 chr3 95487668 95487668 C G exonic Adamtsl4 nonsynonymous SNV NM_144899:c.G911C:p.G304A exonic Adamtsl4 nonsynonymous SNV uc008qkm.1:c.G911C:p.G304A exonic ENSMUSG00000015850 nonsynonymous SNV ENSMUST00000015994:c.G911C:p.G304A 3qF2.1 NA NA chr3 95487668 CAGxCAT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260399 0.260965 0.997832 37 0 0 10.667737 0.3125 0.02 -0.140251 11 5 313 126 60 60 0 0 CC 4.812482 16 0 443 0 KEEP - Adamtsl4 YES Spont_2 chr4 118084913 118084913 C G intronic Med8 NA NA intronic Med8 NA NA intronic ENSMUSG00000006392 NA NA 4qD2.1 NA NA chr4 118084913 TGGxCTA C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.780965 0.78106 0.999879 63 0 0 16.141661 0.205882 0.02 -0.297616 27 7 746 203 60 60 0 0 CC 6.615727 22 0 598 0 KEEP + Med8 YES Spont_2 chr4 125855289 125855289 A C exonic Thrap3 nonsynonymous SNV NM_146153:c.T1553G:p.F518C exonic Thrap3 nonsynonymous SNV uc008usv.1:c.T1553G:p.F518C exonic ENSMUSG00000043962 nonsynonymous SNV ENSMUST00000080919:c.T1553G:p.F518C 4qD2.2 "Score=0.961226;Name=No.89710,chrX:158789663" NA chr4 125855289 CGGxAAT A C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 60 0 3 6.366193 0.130435 0.02 -0.201698 20 3 564 88 46 60 0 0 AA 9.323773 31 0 853 0 KEEP - Thrap3 NO Spont_2 chr4 139713406 139713406 G A exonic Igsf21 synonymous SNV NM_198610:c.C153T:p.D51D exonic Igsf21 synonymous SNV uc008vmu.2:c.C153T:p.D51D exonic ENSMUSG00000040972 synonymous SNV ENSMUST00000039331:c.C153T:p.D51D 4qD3 NA NA chr4 139713406 GCCxTCT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 222 0 0 30.269702 0.186047 0.02 0.942961 70 16 1795 405 60 60 0 0 GG 27.901851 93 0 2330 0 KEEP - Igsf21 NO Spont_2 chr4 140593885 140593885 G C exonic Crocc synonymous SNV NM_001145958:c.C1380G:p.R460R exonic Crocc synonymous SNV uc012dnz.1:c.C1380G:p.R460R exonic ENSMUSG00000040860 synonymous SNV ENSMUST00000040222:c.C1380G:p.R460R 4qD3 NA NA chr4 140593885 CTGxCGC G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 107 0 0 10.326469 0.135135 0.02 -0.324459 32 5 920 143 60 60 0 0 GG 16.834243 56 0 1532 0 KEEP - Crocc YES Spont_2 chr4 141187809 141187809 A C exonic Plekhm2 nonsynonymous SNV NM_001033150:c.T1621G:p.L541V exonic Plekhm2 nonsynonymous SNV uc008voz.1:c.T1126G:p.L376V exonic ENSMUSG00000028917 nonsynonymous SNV ENSMUST00000030751:c.T1561G:p.L521V 4qE1 NA NA chr4 141187809 GCAxCTG A C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.99986 39 0 0 6.982423 0.230769 0.02 -0.166616 10 3 276 86 60 60 0 0 AA 5.712044 19 0 500 0 KEEP - Plekhm2 NO Spont_2 chr4 141368196 141368196 G C exonic Casp9 nonsynonymous SNV NM_015733:c.G1237C:p.A413P exonic Casp9 nonsynonymous SNV uc008vpi.1:c.G1237C:p.A413P exonic ENSMUSG00000028914 nonsynonymous SNV ENSMUST00000030747:c.G1237C:p.A413P 4qE1 NA NA chr4 141368196 TGGxCTC G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 211 4 0 51.417796 0.344828 0.02 1.276907 38 20 1063 581 60 60 0 0 GG 33.079469 110 0 3008 0 KEEP + Casp9 YES Spont_2 chr4 142859163 142859163 C A exonic Pdpn nonsynonymous SNV NM_010329:c.G440T:p.G147V exonic Pdpn nonsynonymous SNV uc008vqa.1:c.G440T:p.G147V exonic ENSMUSG00000028583 nonsynonymous SNV ENSMUST00000119654:c.G401T:p.G134V 4qE1 NA NA chr4 142859163 ACGxCAA C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 93 0 0 20.430555 0.257143 0.02 -0.306945 26 9 760 248 60 60 0 0 CC 12.331839 41 0 1143 0 KEEP - Pdpn NO Spont_2 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.423209 0.423478 0.999366 52 0 0 41.389202 0.714286 0.02 -0.184118 6 15 174 397 60 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 NO Spont_2 chr4 145489259 145489259 G C intergenic "Gm13238(dist=61364),1700095A21Rik(dist=161907)" NA NA exonic Gm13051 nonsynonymous SNV uc008vsa.1:c.G585C:p.Q195H exonic ENSMUSG00000078500 nonsynonymous SNV ENSMUST00000123460:c.G585C:p.Q195H 4qE1 "Score=0.986863;Name=No.86634,chr4:146677141" NA chr4 145489259 CCAxAGA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.986151 0.986153 0.999997 174 0 61 9.557536 0.084746 0.02 1.374736 54 5 1574 146 60 29 0 0 GG 17.147532 57 0 1638 0 KEEP + Gm13238 YES Spont_2 chr4 146632784 146632784 T C intronic Gm13152 NA NA ncRNA_intronic AK082693 NA NA ncRNA_intronic "ENSMUSG00000084976,ENSMUSG00000091833" NA NA 4qE1 "Score=0.980581;Name=No.86589,chr4:145274520" NA chr4 146632784 GAAxCCA T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 292 28 28 31.697537 0.131579 0.02 2.609945 99 15 2742 438 60 60 0 0 TT 37.280545 124 0 3387 0 KEEP - Gm13152 NO Spont_2 chr4 48409204 48409204 A G exonic Invs nonsynonymous SNV NM_001281977:c.A548G:p.D183G exonic Invs nonsynonymous SNV uc008sva.1:c.A1004G:p.D335G exonic ENSMUSG00000028344 nonsynonymous SNV ENSMUST00000107715:c.A836G:p.D279G 4qB1 NA NA chr4 48409204 ATGxCGA A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 88 1 0 15.772367 0.179487 0.02 -0.342009 32 7 901 204 60 60 0 0 AA 11.429112 38 0 1045 0 KEEP + Invs NO Spont_2 chr5 110769304 110769304 G C exonic P2rx2 nonsynonymous SNV NM_153400:c.C1366G:p.L456V exonic P2rx2 nonsynonymous SNV uc008yqq.1:c.C1105G:p.L369V exonic ENSMUSG00000029503 nonsynonymous SNV ENSMUST00000058016:c.C1366G:p.L456V 5qF NA NA chr5 110769304 CAAxAGT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 95 0 0 32.982871 0.413793 0.02 -0.254346 17 12 498 358 60 60 0 0 GG 16.545441 55 0 1573 0 KEEP - P2rx2 YES Spont_2 chr5 123257331 123257331 A C exonic Anapc5 nonsynonymous SNV NM_001042491:c.T692G:p.F231C exonic Anapc5 nonsynonymous SNV uc008zmm.1:c.T314G:p.F105C exonic ENSMUSG00000029472 nonsynonymous SNV ENSMUST00000086216:c.T692G:p.F231C 5qF NA NA chr5 123257331 TTAxATT A C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 91 2 0 10.525941 0.135135 0.02 -0.324487 32 5 919 145 60 60 0 0 AA 11.430111 38 0 1062 0 KEEP - Anapc5 NO Spont_2 chr5 125253844 125253844 C G exonic Dnah10 nonsynonymous SNV NM_019536:c.C5010G:p.C1670W exonic Dnahc10 nonsynonymous SNV uc008zqp.2:c.C5010G:p.C1670W exonic ENSMUSG00000038011 nonsynonymous SNV ENSMUST00000058440:c.C5010G:p.C1670W 5qF NA NA chr5 125253844 GTGxCAG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835713 0.835716 0.999997 79 1 0 21.604666 0.25 0.02 -0.315676 27 9 762 261 60 60 0 0 CC 9.006662 30 0 803 0 KEEP + Dnah10 YES Spont_2 chr5 140918819 140918819 C G intronic Eif3b NA NA intronic Eif3b NA NA intronic ENSMUSG00000056076 NA NA 5qG2 NA NA chr5 140918819 CATxTGT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 148 0 0 41.840328 0.278689 0.02 1.357363 44 17 1269 494 60 60 0 0 CC 15.032163 50 0 1418 0 KEEP + Eif3b YES Spont_2 chr5 143640400 143640400 C G exonic Fbxl18 nonsynonymous SNV NM_001033312:c.G1904C:p.C635S exonic Fbxl18 nonsynonymous SNV uc009aji.1:c.G1904C:p.C635S exonic ENSMUSG00000066640 nonsynonymous SNV ENSMUST00000035985:c.G1904C:p.C635S 5qG2 NA NA chr5 143640400 TGAxACA C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 111 0 0 32.914978 0.282609 0.02 -0.403144 33 13 919 386 60 60 0 0 CC 12.633124 42 0 1178 0 KEEP - Fbxl18 YES Spont_2 chr5 143733578 143733578 C A exonic Fscn1 nonsynonymous SNV NM_007984:c.C1283A:p.S428Y exonic Fscn1 nonsynonymous SNV uc009ajl.1:c.C1283A:p.S428Y exonic ENSMUSG00000029581 nonsynonymous SNV ENSMUST00000031565:c.C1283A:p.S428Y 5qG2 NA NA chr5 143733578 ACTxCAC C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 146 0 0 31.464642 0.208333 0.02 1.064034 57 15 1630 403 60 60 0 0 CC 12.271312 41 0 1143 0 KEEP + Fscn1 NO Spont_2 chr5 144967223 144967223 G C intronic Tecpr1 NA NA intronic Tecpr1 NA NA intronic ENSMUSG00000066621 NA NA 5qG2 NA NA chr5 144967223 TGGxCAG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 248 1 0 67.32064 0.273585 0.02 2.658388 77 29 2191 805 60 60 0 0 GG 29.067597 97 0 2622 0 KEEP - Tecpr1 YES Spont_2 chr5 145594018 145594018 A G exonic Trrap nonsynonymous SNV NM_001081362:c.A8125G:p.T2709A exonic Trrap nonsynonymous SNV uc009alu.1:c.A4261G:p.T1421A exonic ENSMUSG00000045482 nonsynonymous SNV ENSMUST00000038980:c.A8125G:p.T2709A 5qG2 NA NA chr5 145594018 CAGxCAA A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 165 0 0 15.721317 0.105263 0.02 1.127139 68 8 1860 230 60 60 0 0 AA 23.749101 79 0 2113 0 KEEP + Trrap NO Spont_2 chr5 147646668 147646668 A G exonic Rpl21 nonsynonymous SNV NM_019647:c.A230G:p.N77S exonic Rpl21 nonsynonymous SNV uc009ank.2:c.A230G:p.N77S exonic ENSMUSG00000041453 nonsynonymous SNV ENSMUST00000035983:c.A230G:p.N77S 5qG3 NA NA chr5 147646668 TCAxCAA A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 256 0 1 20.224832 0.090164 0.02 2.60719 111 11 3079 310 70 60 0 0 AA 26.463828 88 0 2382 0 KEEP + Rpl21 NO Spont_2 chr5 14911322 14911322 C A intronic Gm9758 NA NA intronic Gm9758 NA NA intronic ENSMUSG00000033219 NA NA 5qA1 "Score=0.976005;Name=No.90292,chr5:14924346" NA chr5 14911322 GACxGAA C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 690 15 193 26.632774 0.063745 0.02 6.046093 235 16 6627 448 57 40 0 0 CC 70.928626 236 0 6351 0 KEEP - Gm9758 NO Spont_2 chr5 15030242 15030242 A G exonic Gm17019 synonymous SNV NM_182957:c.T555C:p.R185R exonic Gm17019 synonymous SNV uc008wmq.2:c.T555C:p.R185R exonic ENSMUSG00000091897 synonymous SNV ENSMUST00000167908:c.T555C:p.R185R 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030242 CAAxCGT A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1546 24 364 39.565825 0.041186 0.02 15.944311 582 25 16232 728 60 36 0 0 AA 178.733243 601 1 16351 18 KEEP + Gm17019 NO Spont_2 chr5 15030267 15030267 G C exonic Gm17019 nonsynonymous SNV NM_182957:c.C530G:p.A177G exonic Gm17019 nonsynonymous SNV uc008wmq.2:c.C530G:p.A177G exonic ENSMUSG00000091897 nonsynonymous SNV ENSMUST00000167908:c.C530G:p.A177G 5qA2 "Score=0.975328;Name=No.90323,chr5:14950708" NA chr5 15030267 TCAxCCT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1998 34 334 27.241614 0.028966 0.02 17.280768 704 21 20544 583 60 35 0 0 GG 263.370379 878 1 24906 6 KEEP + Gm17019 YES Spont_2 chr5 15126151 15126151 C A exonic Speer4d nonsynonymous SNV NM_025759:c.C55A:p.Q19K exonic Speer4d nonsynonymous SNV uc008wmr.1:c.C55A:p.Q19K exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000095006:c.C55A:p.Q19K 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15126151 AAGxAGT C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1940 13 616 27.418243 0.033043 0.02 13.900149 556 19 16137 545 57 34 0 0 CC 255.347435 849 0 23830 0 KEEP + Speer4d NO Spont_2 chr5 15128347 15128347 A T exonic Speer4d nonsynonymous SNV NM_025759:c.A401T:p.D134V exonic Speer4d nonsynonymous SNV uc008wmr.1:c.A401T:p.D134V exonic ENSMUSG00000070933 nonsynonymous SNV ENSMUST00000119100:c.A245T:p.D82V 5qA2 "Score=0.9751;Name=No.90307,chr5:14924205" NA chr5 15128347 CTGxTTG A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 2000 47 443 48.434935 0.049034 0.02 15.392312 640 33 17822 897 60 43 0 0 AA 278.620008 927 0 24988 0 KEEP + Speer4d NO Spont_2 chr5 151525745 151525745 C G intronic Pds5b NA NA intronic Pds5b NA NA intronic ENSMUSG00000034021 NA NA 5qG3 NA NA chr5 151525745 CACxACT C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 82 0 0 6.683769 0.095238 0.02 -0.368286 38 4 1097 105 60 60 0 0 CC 8.422211 28 0 783 0 KEEP + Pds5b YES Spont_2 chr5 26402123 26402123 G A intronic Gm21671 NA NA intergenic "Speer4a(dist=36078),Gm10471(dist=6589)" NA NA intergenic "ENSMUSG00000073117(dist=17002),ENSMUSG00000073116(dist=6589)" NA NA 5qB1 "Score=0.958652;Name=No.90497,chr5:26366487" NA chr5 26402123 AGCxGGG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 424 4 24 20.027309 0.073826 0.02 4.048373 138 11 3712 318 60 60 0 0 GG 70.637566 235 0 6141 0 KEEP NA Gm21671 NO Spont_2 chr5 26430695 26430695 T C exonic 5031410I06Rik nonsynonymous SNV NM_207657:c.A148G:p.R50G exonic 5031410I06Rik nonsynonymous SNV uc008wtf.1:c.A148G:p.R50G exonic ENSMUSG00000051940 nonsynonymous SNV ENSMUST00000063524:c.A148G:p.R50G 5qB1 "Score=0.971388;Name=No.90508,chr5:26432699" NA chr5 26430695 GTCxGTG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1697 28 333 15.538227 0.031423 0.02 7.79683 524 17 14810 399 60 36 0 0 TT 219.213119 729 0 19946 0 KEEP - 5031410I06Rik NO Spont_2 chr5 26445097 26445097 G T intronic Gm10220 NA NA intronic Gm10220 NA NA intronic ENSMUSG00000067698 NA NA 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445097 AAAxTAG G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 929 7 276 10.537278 0.035242 0.02 3.966524 219 8 6415 217 57 35 0 0 GG 147.071561 489 0 13858 0 KEEP - Gm10220 NO Spont_2 chr5 26445122 26445122 T A intronic Gm10220 NA NA intronic Gm10220 NA NA intronic ENSMUSG00000067698 NA NA 5qB1 "Score=0.975378;Name=No.90484,chr5:26323147" NA chr5 26445122 GGTxGGC T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1475 8 470 22.426719 0.046512 0.02 7.824098 328 16 9138 428 57 35 0 0 TT 221.974617 741 1 20244 7 KEEP - Gm10220 NO Spont_2 chr5 36837878 36837878 C G exonic Tbc1d14 nonsynonymous SNV NM_001113364:c.G965C:p.R322P exonic Tbc1d14 nonsynonymous SNV uc008xes.2:c.G965C:p.R322P exonic ENSMUSG00000029192 nonsynonymous SNV ENSMUST00000087550:c.G1535C:p.R512P 5qB3 NA NA chr5 36837878 ATGxGGC C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 60 2 0 17.91816 0.35 0.02 -0.175316 13 7 330 202 60 60 0 0 CC 8.714919 29 0 732 0 KEEP - Tbc1d14 YES Spont_2 chr5 93473133 93473133 C G exonic Sowahb nonsynonymous SNV NM_175270:c.G752C:p.R251T exonic Ankrd56 nonsynonymous SNV uc008ydw.1:c.G752C:p.R251T exonic ENSMUSG00000045314 nonsynonymous SNV ENSMUST00000061328:c.G752C:p.R251T 5qE2 NA NA chr5 93473133 TCTxTGG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693229 0.693668 0.999366 53 0 0 33.677158 0.433333 0.02 -0.262974 17 13 489 364 60 60 0 0 CC 5.114043 17 0 486 0 KEEP - Sowahb YES Spont_2 chr6 108798617 108798617 T A intronic Edem1 NA NA intronic Edem1 NA NA intronic ENSMUSG00000030104 NA NA 6qE2 NA NA chr6 108798617 TTTxGCT T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800148 0.800245 0.999879 66 0 0 9.557765 0.142857 0.02 -0.306894 30 5 846 134 60 60 0 0 TT 6.617399 22 0 614 0 KEEP + Edem1 NO Spont_2 chr6 119250338 119250338 G C intronic Cacna2d4 NA NA intronic Cacna2d4 NA NA intronic ENSMUSG00000041460 NA NA 6qF1 NA NA chr6 119250338 TGGxCTT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 156 0 0 45.062766 0.24359 0.02 1.100714 59 19 1687 548 60 60 0 0 GG 16.837624 56 0 1515 0 KEEP + Cacna2d4 YES Spont_2 chr6 125095670 125095670 C G exonic Iffo1 nonsynonymous SNV NM_001039669:c.C396G:p.S132R exonic Iffo1 nonsynonymous SNV uc009dto.1:c.C396G:p.S132R exonic ENSMUSG00000038271 nonsynonymous SNV ENSMUST00000051171:c.C396G:p.S132R 6qF3 NA NA chr6 125095670 CAGxCCG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 191 0 0 36.918686 0.171717 0.02 2.589375 82 17 2236 485 60 60 0 0 CC 21.018081 70 0 1876 0 KEEP + Iffo1 YES Spont_2 chr6 29844852 29844852 A G exonic Ahcyl2 synonymous SNV NM_001171000:c.A1332G:p.E444E exonic Ahcyl2 synonymous SNV uc009bel.2:c.A708G:p.E236E exonic ENSMUSG00000029772 synonymous SNV ENSMUST00000166064:c.A60G:p.E20E 6qA3.3 NA NA chr6 29844852 TGAxGTC A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 146 0 0 17.093877 0.123077 0.02 1.313354 57 8 1644 238 60 60 0 0 AA 15.940853 53 0 1473 0 KEEP + Ahcyl2 NO Spont_2 chr6 30610834 30610834 C T intronic Cep41 NA NA intronic Tsga14 NA NA intronic ENSMUSG00000029790 NA NA 6qA3.3 NA NA chr6 30610834 GAAxGAT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 284 2 0 212.691259 0.598485 0.02 2.233734 53 79 1413 2137 60 60 0 0 CC 28.259172 94 0 2447 0 KEEP - Cep41 NO Spont_2 chr6 35183503 35183503 T G intronic Nup205 NA NA intronic "Nup205,mKIAA0225" NA NA intronic ENSMUSG00000038759 NA NA 6qB1 NA NA chr6 35183503 GGAxTGC T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 30 0 0 13.445552 0.416667 0.02 -0.114002 7 5 200 146 60 60 0 0 TT 3.904239 13 0 345 0 KEEP + Nup205 NO Spont_2 chr6 43806721 43806721 G C intergenic "Tpk1(dist=190547),Cntnap2(dist=1203339)" NA NA intergenic "Tpk1(dist=190547),Cntnap2(dist=1203339)" NA NA intergenic "ENSMUSG00000029735(dist=190444),ENSMUSG00000077146(dist=30472)" NA NA 6qB2.1 NA NA chr6 43806721 CCTxATG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 415 3 47 33.335254 0.091398 0.02 3.830439 169 17 4968 499 55 55 0 0 GG 40.157808 138 1 3972 12 KEEP NA Tpk1 YES Spont_2 chr6 48938788 48938788 G C exonic Svs1 nonsynonymous SNV NM_172888:c.G1730C:p.G577A exonic Svs1 nonsynonymous SNV uc009bwe.2:c.G1730C:p.G577A exonic ENSMUSG00000039215 nonsynonymous SNV ENSMUST00000037696:c.G1730C:p.G577A 6qB2.3 NA NA chr6 48938788 ATGxCAT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 209 0 0 19.79908 0.107527 0.02 1.076584 83 10 2393 288 60 60 0 0 GG 23.759348 79 0 2181 0 KEEP + Svs1 YES Spont_2 chr6 50523860 50523860 T G exonic 4921507P07Rik nonsynonymous SNV NM_027564:c.A1607C:p.H536P exonic 4921507P07Rik nonsynonymous SNV uc009bxf.1:c.A1607C:p.H536P exonic ENSMUSG00000029828 nonsynonymous SNV ENSMUST00000031852:c.A1607C:p.H536P 6qB2.3 NA NA chr6 50523860 GAAxGAT T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 126 0 0 25.039691 0.183333 0.02 1.267382 49 11 1359 322 60 60 0 0 TT 13.231912 44 0 1185 0 KEEP + 4921507P07Rik NO Spont_2 chr6 73026627 73026627 C T exonic Dnah6 nonsynonymous SNV NM_001164669:c.G8773A:p.E2925K exonic Dnahc6 nonsynonymous SNV uc009cjk.2:c.G8773A:p.E2925K exonic ENSMUSG00000052861 nonsynonymous SNV ENSMUST00000114040:c.G8617A:p.E2873K 6qC1 NA NA chr6 73026627 CTTxCAC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 117 2 0 26.892612 0.2 0.02 1.26747 48 12 1380 342 60 60 0 0 CC 11.73178 39 0 1109 0 KEEP - Dnah6 NO Spont_2 chr7 106495601 106495601 T G exonic Serpinh1 nonsynonymous SNV NM_001111044:c.A785C:p.K262T exonic Serpinh1 nonsynonymous SNV uc009ilj.2:c.A785C:p.K262T exonic ENSMUSG00000070436 nonsynonymous SNV ENSMUST00000169437:c.A785C:p.K262T 7qE2 NA NA chr7 106495601 AGCxTGT T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 103 0 0 9.827105 0.135135 0.02 -0.324477 32 5 915 138 60 60 0 0 TT 15.339677 51 0 1413 0 KEEP - Serpinh1 NO Spont_2 chr7 10683533 10683533 C A exonic Vmn2r51 nonsynonymous SNV NM_001105179:c.G1474T:p.G492C exonic Vmn2r51 nonsynonymous SNV uc012eyp.1:c.G1474T:p.G492C exonic ENSMUSG00000058685 nonsynonymous SNV ENSMUST00000094863:c.G1474T:p.G492C 7qA1 "Score=0.947644;Name=No.98073,chr7:10505547" NA chr7 10683533 GACxGTG C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 830 16 1 240.159453 0.305031 0.02 7.868255 221 97 5953 2788 60 60 0 0 CC 95.283751 326 1 8430 25 KEEP - Vmn2r51 NO Spont_2 chr7 107074403 107074403 T G exonic Rnf169 nonsynonymous SNV NM_175388:c.A1494C:p.K498N exonic Rnf169 nonsynonymous SNV uc009img.2:c.A1494C:p.K498N exonic ENSMUSG00000058761 nonsynonymous SNV ENSMUST00000080817:c.A1494C:p.K498N 7qE2 NA NA chr7 107074403 TACxTTG T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 128 0 0 32.514455 0.368421 0.02 -0.333179 24 14 684 367 60 60 0 0 TT 20.664685 69 0 1852 0 KEEP - Rnf169 NO Spont_2 chr7 108729574 108729574 G C intronic Art2b NA NA ncRNA_intronic Art2a NA NA intronic ENSMUSG00000030651 NA NA 7qE3 NA NA chr7 108729574 AAAxAGG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 627 2 0 165.100165 0.572816 0.02 2.872282 44 59 1307 1675 60 60 0 0 GG 122.424561 407 0 11687 0 KEEP - Art2b YES Spont_2 chr7 109862021 109862021 T A exonic Olfr33 nonsynonymous SNV NM_147073:c.A905T:p.K302M exonic Olfr33 nonsynonymous SNV uc009isj.1:c.A905T:p.K302M exonic ENSMUSG00000066273 nonsynonymous SNV ENSMUST00000084817:c.A905T:p.K302M 7qE3 NA NA chr7 109862021 GACxTGA T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 169 6 3 8.486213 0.081967 0.02 1.062401 56 5 1601 136 60 60 0 0 TT 25.566797 85 0 2378 0 KEEP - Olfr33 NO Spont_2 chr7 109901507 109901507 T C exonic Olfr560 nonsynonymous SNV NM_147113:c.A935G:p.K312R exonic Olfr560 nonsynonymous SNV uc009ism.1:c.A935G:p.K312R UTR5 ENSMUSG00000043366 NA NA 7qE3 NA NA chr7 109901507 TCTxTAG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 64 0 0 17.302976 0.28 0.02 -0.219241 18 7 512 204 60 60 0 0 TT 9.01795 30 0 813 0 KEEP - Olfr560 NO Spont_2 chr7 115302475 115302475 T G exonic Olfr485 nonsynonymous SNV NM_001011810:c.A911C:p.K304T exonic Olfr485 nonsynonymous SNV uc009jca.1:c.A911C:p.K304T ncRNA_exonic ENSMUSG00000070411 NA NA 7qE3 "Score=0.898784;Name=No.101614,chr7:115560636" NA chr7 115302475 TCCxTAA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 136 0 0 31.126367 0.365854 0.02 -0.35892 26 15 755 357 60 60 0 0 TT 23.461743 78 0 2179 0 KEEP - Olfr485 NO Spont_2 chr7 11773873 11773873 C A intergenic "Zscan4d(dist=22376),Zscan4e(dist=117854)" NA NA intergenic "Zscan4d(dist=22376),Zscan4e(dist=117854)" NA NA intergenic "ENSMUSG00000090714(dist=22376),ENSMUSG00000080350(dist=114694)" NA NA 7qA1 "Score=0.947356;Name=No.98133,chr7:12129614" NA chr7 11773873 CTTxATC C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 98 3 3 10.418581 0.166667 0.02 -0.271786 25 5 738 139 60 60 0 0 CC 15.335139 51 0 1450 0 KEEP NA Zscan4d NO Spont_2 chr7 134945761 134945761 G C exonic Hsd3b7 synonymous SNV NM_001040684:c.G462C:p.G154G exonic Hsd3b7 synonymous SNV uc009jwv.1:c.G462C:p.G154G exonic ENSMUSG00000042289 synonymous SNV ENSMUST00000046863:c.G543C:p.G181G 7qF3 NA NA chr7 134945761 AGGxCTA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 59 0 0 17.239384 0.6 0.02 -0.087684 4 6 108 173 60 60 0 0 GG 12.526423 42 0 1097 0 KEEP + Hsd3b7 YES Spont_2 chr7 149045004 149045004 A G exonic Muc5b synonymous SNV NM_028801:c.A5781G:p.K1927K exonic Muc5b synonymous SNV uc009kmc.1:c.A5781G:p.K1927K exonic ENSMUSG00000066108 synonymous SNV ENSMUST00000084424:c.A5781G:p.K1927K 7qF5 "Score=0.971984;Name=No.101649,chr7:149045692" NA chr7 149045004 GAAxGTG A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 463 1 0 72.583166 0.226277 0.02 2.50395 106 31 3056 896 60 60 0 0 AA 73.086113 243 0 6772 0 KEEP + Muc5b NO Spont_2 chr7 3772922 3772922 C A intergenic "Pirb(dist=100938),Pira2(dist=15490)" NA NA ncRNA_intronic Pirb NA NA intronic "ENSMUSG00000074417,ENSMUSG00000074419" NA NA 7qA1 "Score=0.933428;Name=No.96079,chr7:4221954" NA chr7 3772922 GTTxTTC C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 377 5 21 70.082996 0.178571 0.02 3.055633 161 35 4748 933 60 60 0 0 CC 31.573587 105 0 2983 0 KEEP - Pirb NO Spont_2 chr7 53272820 53272820 A G intronic Abcc6 NA NA intronic Abcc6 NA NA intronic ENSMUSG00000030834 NA NA 7qB4 NA NA chr7 53272820 CCCxCCT A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.195397 0.196312 0.995343 31 0 0 9.075746 0.363636 0.02 -0.122716 7 4 190 103 60 60 0 0 AA 4.210319 14 0 378 0 KEEP - Abcc6 NO Spont_2 chr7 53272834 53272834 C T intronic Abcc6 NA NA intronic Abcc6 NA NA intronic ENSMUSG00000030834 NA NA 7qB4 NA NA chr7 53272834 ACAxCTC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 39 0 0 9.490948 0.333333 0.02 -0.13154 8 4 231 109 60 60 0 0 CC 5.403883 18 0 473 0 KEEP - Abcc6 NO Spont_2 chr7 53317214 53317214 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53317214 GGGxACA G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 137 1 0 30.632376 0.254902 0.02 1.293679 38 13 1101 370 60 60 0 0 GG 18.342384 61 0 1708 0 KEEP + Nomo1 NO Spont_2 chr7 53318441 53318441 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53318441 ATGxGTG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387352 0.387407 0.999859 42 0 0 11.567332 0.277778 0.02 -0.17538 13 5 368 138 60 60 0 0 GG 5.414035 18 0 498 0 KEEP + Nomo1 NO Spont_2 chr7 53323993 53323993 C T intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53323993 TCCxTTG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.456764 0.457757 0.997832 43 0 0 14.264898 0.272727 0.02 -0.192942 16 6 467 170 60 60 0 0 CC 4.813261 16 0 459 0 KEEP + Nomo1 NO Spont_2 chr7 53362372 53362372 T A exonic Abcc8 synonymous SNV NM_011510:c.A4278T:p.S1426S exonic Abcc8 synonymous SNV uc009gyd.1:c.A2253T:p.S751S exonic ENSMUSG00000040136 synonymous SNV ENSMUST00000033123:c.A4278T:p.S1426S 7qB4 NA NA chr7 53362372 GCGxGAA T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 75 2 0 8.393174 0.148148 0.02 -0.254278 23 4 626 114 60 60 0 0 TT 10.225011 34 0 917 0 KEEP - Abcc8 NO Spont_2 chr7 53379241 53379241 T C intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53379241 CAGxCCC T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 0.999999 71 1 0 14.103093 0.25 0.02 -0.218233 18 6 494 171 60 60 0 0 TT 10.526153 35 0 953 0 KEEP - Abcc8 NO Spont_2 chr7 53517209 53517209 C A intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53517209 GGCxTGG C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099086 0.099721 0.993634 25 0 0 9.78453 0.4 0.02 -0.087695 6 4 177 108 60 60 0 0 CC 3.6099 12 0 343 0 KEEP + Otog NO Spont_2 chr7 53521359 53521359 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53521359 AAGxAGG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196187 0.196312 0.999366 40 0 0 11.421894 0.384615 0.02 -0.122758 8 5 235 128 60 60 0 0 CC 5.112895 17 0 479 0 KEEP + Otog NO Spont_2 chr7 53521368 53521368 A G intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53521368 TGAxAGG A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 34 0 0 10.391553 0.333333 0.02 -0.114006 8 4 224 118 60 60 0 0 AA 3.910533 13 0 367 0 KEEP + Otog NO Spont_2 chr7 53543464 53543464 C T exonic Otog synonymous SNV NM_013624:c.C5226T:p.I1742I exonic Otog synonymous SNV uc009gyk.2:c.C5226T:p.I1742I exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000164538:c.C5226T:p.I1742I 7qB4 NA NA chr7 53543464 CATxGAC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.999859 42 2 0 14.889318 0.333333 0.02 -0.157753 12 6 298 170 60 60 0 0 CC 5.407814 18 0 455 0 KEEP + Otog NO Spont_2 chr7 53553863 53553863 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553863 ATGxATC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 65 0 0 16.001542 0.304348 0.02 -0.245534 16 7 460 188 60 60 0 0 CC 8.420207 28 0 768 0 KEEP + Otog NO Spont_2 chr7 53553865 53553865 T C intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553865 GCAxCCA T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 68 0 0 19.311006 0.32 0.02 -0.254299 17 8 472 223 60 60 0 0 TT 8.72042 29 0 784 0 KEEP + Otog NO Spont_2 chr7 53553867 53553867 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553867 ATCxACC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 70 0 0 17.00273 0.28 0.02 -0.263097 18 7 520 201 60 60 0 0 CC 9.023407 30 0 837 0 KEEP + Otog NO Spont_2 chr7 53633192 53633192 C G intronic Myod1 NA NA intronic Myod1 NA NA intronic ENSMUSG00000009471 NA NA 7qB4 NA NA chr7 53633192 GTGxGTA C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196298 0.196312 0.999931 50 0 0 11.921463 0.384615 0.02 -0.122671 8 5 199 133 60 60 0 0 CC 5.031958 24 1 567 20 KEEP + Myod1 YES Spont_2 chr7 53954822 53954822 T C exonic Saal1 synonymous SNV NM_030233:c.A954G:p.E318E exonic Saal1 synonymous SNV uc009gyu.2:c.A954G:p.E318E exonic ENSMUSG00000006763 synonymous SNV ENSMUST00000143082:c.A954G:p.E318E 7qB4 NA NA chr7 53954822 CTGxTCC T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 125 0 0 10.645386 0.125 0.02 1.445038 35 5 969 148 60 60 0 0 TT 17.444287 58 0 1591 0 KEEP - Saal1 NO Spont_2 chr7 53997787 53997787 G T intronic Saa1 NA NA intronic Saa1 NA NA intronic ENSMUSG00000074115 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:54006945" NA chr7 53997787 GGGxCCT G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 47 0 0 23.585457 0.529412 0.02 -0.149074 8 9 233 244 60 60 0 0 GG 6.918436 23 0 646 0 KEEP - Saa1 NO Spont_2 chr7 54008756 54008756 T A intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008756 TTTxGGG T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 61 1 0 21.309401 0.346154 0.02 -0.236764 17 9 488 243 60 60 0 0 TT 9.023745 30 0 836 0 KEEP + Saa2 NO Spont_2 chr7 54008763 54008763 T C intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008763 TCAxGTT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 64 2 0 26.398217 0.392857 0.02 -0.254265 17 11 464 293 60 60 0 0 TT 9.006226 30 0 788 0 KEEP + Saa2 NO Spont_2 chr7 54028653 54028653 A G intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54028653 AATxCCA A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 107 4 0 25.275493 0.282051 0.02 -0.341866 28 11 745 301 60 60 0 0 AA 16.527518 55 0 1431 0 KEEP - Hps5 NO Spont_2 chr7 54032439 54032439 T C intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54032439 CAGxTTA T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 58 0 0 18.102543 0.304348 0.02 -0.201705 16 7 451 209 60 60 0 0 TT 8.420536 28 0 765 0 KEEP - Hps5 NO Spont_2 chr7 54070838 54070838 A G intronic Gtf2h1 NA NA intronic Gtf2h1 NA NA intronic ENSMUSG00000006599 NA NA 7qB4 NA NA chr7 54070838 CTCxGGT A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 99 2 0 9.684133 0.178571 0.02 -0.245536 23 5 663 130 60 60 0 0 AA 14.125583 47 0 1302 0 KEEP + Gtf2h1 NO Spont_2 chr7 54104300 54104300 A G intronic Ldha NA NA intronic Ldha NA NA intronic ENSMUSG00000063229 NA NA 7qB4 NA NA chr7 54104300 AGAxTCA A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162444 0.162467 0.999859 33 1 0 13.223702 0.384615 0.02 -0.114007 8 5 227 146 60 60 0 0 AA 5.411271 18 0 474 0 KEEP + Ldha NO Spont_2 chr7 54441140 54441140 A T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.T902A:p.L301Q 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441140 CACxGCT A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 241 5 1 22.279556 0.127907 0.02 2.647166 75 11 2095 313 60 60 0 0 AA 29.474809 98 0 2697 0 KEEP - Mrgpra6 NO Spont_2 chr7 54441179 54441179 G T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.C863A:p.P288H 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441179 TCAxGTG G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 16 4 35.596946 0.141732 0.02 1.977053 109 18 3193 495 60 60 0 0 GG 29.167216 97 0 2750 0 KEEP - Mrgpra6 NO Spont_2 chr7 54441206 54441206 C T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.G836A:p.S279N 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441206 GCAxTCT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 308 17 7 30.695742 0.113475 0.02 3.916013 125 16 3625 447 60 37 0 0 CC 25.567853 85 0 2393 0 KEEP - Mrgpra6 NO Spont_2 chr7 54681932 54681932 T A exonic Mrgpra2a nonsynonymous SNV NM_001172588:c.A947T:p.E316V exonic Mrgpra2a nonsynonymous SNV uc009hag.2:c.A947T:p.E316V exonic ENSMUSG00000039854 nonsynonymous SNV ENSMUST00000060569:c.A869T:p.E290V 7qB4 "Score=0.992523;Name=No.101347,chr7:54709200" NA chr7 54681932 GTCxCAG T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 280 0 29 36.669379 0.191011 0.02 0.905958 72 17 2063 474 46 46 0 0 TT 39.094587 130 0 3632 0 KEEP - Mrgpra2a NO Spont_2 chr7 54845102 54845102 G A exonic Mrgpra3 nonsynonymous SNV NM_153067:c.C445T:p.R149C exonic Mrgpra3 nonsynonymous SNV uc009haj.2:c.C445T:p.R149C exonic ENSMUSG00000078698 nonsynonymous SNV ENSMUST00000046797:c.C364T:p.R122C 7qB4 "Score=0.935045;Name=No.101352,chr7:54805085" NA chr7 54845102 GGCxGCA G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 127 4 4 9.769823 0.15625 0.02 -0.368153 27 5 700 134 60 37 0 0 GG 19.835636 66 0 1688 0 KEEP - Mrgpra3 NO Spont_2 chr7 55236551 55236551 A T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.T671A:p.L224H exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.T671A:p.L224H exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.T671A:p.L224H 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236551 AGAxGAA A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 167 4 2 22.262664 0.15493 0.02 0.914746 60 11 1706 303 60 60 0 0 AA 18.945799 63 0 1739 0 KEEP - Mrgpra4 NO Spont_2 chr7 55236571 55236571 C T exonic Mrgpra4 nonsynonymous SNV NM_153524:c.G651A:p.M217I exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.G651A:p.M217I exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.G651A:p.M217I 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236571 CAGxATG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 197 8 4 20.724075 0.134146 0.02 2.229166 71 11 2056 295 60 60 0 0 CC 22.860117 76 0 2127 0 KEEP - Mrgpra4 NO Spont_2 chr7 55236580 55236580 C G exonic Mrgpra4 synonymous SNV NM_153524:c.G642C:p.V214V exonic Mrgpra4 synonymous SNV uc009hak.1:c.G642C:p.V214V exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G642C:p.V214V 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236580 GGTxACG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 201 8 5 23.745122 0.1375 0.02 0.925283 69 11 2013 324 60 60 0 0 CC 25.568402 85 0 2417 0 KEEP - Mrgpra4 YES Spont_2 chr7 55236601 55236601 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G621A:p.T207T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G621A:p.T207T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G621A:p.T207T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236601 TTTxGTC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 217 11 5 33.101753 0.1875 0.02 2.701699 65 15 1741 427 60 60 0 0 CC 27.652936 92 0 2412 0 KEEP - Mrgpra4 NO Spont_2 chr7 55236602 55236602 G A exonic Mrgpra4 nonsynonymous SNV NM_153524:c.C620T:p.T207M exonic Mrgpra4 nonsynonymous SNV uc009hak.1:c.C620T:p.T207M exonic ENSMUSG00000067173 nonsynonymous SNV ENSMUST00000087092:c.C620T:p.T207M 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236602 TTCxTCT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 222 11 5 12.327854 0.089744 0.02 2.557658 71 7 1889 192 60 37 0 0 GG 28.839948 96 0 2360 0 KEEP - Mrgpra4 NO Spont_2 chr7 55236643 55236643 G A exonic Mrgpra4 synonymous SNV NM_153524:c.C579T:p.T193T exonic Mrgpra4 synonymous SNV uc009hak.1:c.C579T:p.T193T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.C579T:p.T193T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236643 CAGxGTG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 254 8 3 36.650751 0.207792 0.02 2.710061 61 16 1762 461 60 60 0 0 GG 34.279803 114 0 3142 0 KEEP - Mrgpra4 NO Spont_2 chr7 55236700 55236700 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G522A:p.T174T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G522A:p.T174T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G522A:p.T174T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236700 GTTxGTT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 222 0 0 44.721353 0.321429 0.02 1.127418 38 18 985 514 60 60 0 0 CC 33.35385 111 0 2837 0 KEEP - Mrgpra4 NO Spont_2 chr7 55276756 55276756 A G exonic Mrgprx1 synonymous SNV NM_207540:c.T612C:p.I204I exonic Mrgprx1 synonymous SNV uc009hal.1:c.T612C:p.I204I exonic ENSMUSG00000070552 synonymous SNV ENSMUST00000094390:c.T612C:p.I204I 7qB4 NA NA chr7 55276756 GAGxATC A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099257 0.099721 0.995343 27 0 0 25.041592 0.8 0.02 -0.087703 2 8 57 234 60 60 0 0 AA 4.195495 14 0 372 0 KEEP - Mrgprx1 NO Spont_2 chr7 55277022 55277022 T C exonic Mrgprx1 nonsynonymous SNV NM_207540:c.A346G:p.I116V exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.A346G:p.I116V exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.A346G:p.I116V 7qB4 NA NA chr7 55277022 GGAxGCT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 66 0 0 27.013406 0.428571 0.02 -0.254216 16 12 438 296 60 60 0 0 TT 8.025024 29 1 785 6 KEEP - Mrgprx1 NO Spont_2 chr7 55277271 55277271 C T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.G97A:p.V33I exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.G97A:p.V33I exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.G97A:p.V33I 7qB4 NA NA chr7 55277271 GGAxCAG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 43 0 0 24.52919 0.5625 0.02 -0.157835 7 9 196 250 60 60 0 0 CC 6.015807 20 0 559 0 KEEP - Mrgprx1 NO Spont_2 chr7 55277275 55277275 G T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.C93A:p.F31L exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.C93A:p.F31L exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.C93A:p.F31L 7qB4 NA NA chr7 55277275 CAGxAAG G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 42 0 0 21.213231 0.533333 0.02 -0.14907 7 8 198 219 60 60 0 0 GG 6.316971 21 0 593 0 KEEP - Mrgprx1 NO Spont_2 chr7 55277282 55277282 A G exonic Mrgprx1 nonsynonymous SNV NM_207540:c.T86C:p.L29P exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.T86C:p.L29P exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.T86C:p.L29P 7qB4 NA NA chr7 55277282 GACxGGG A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260931 0.260965 0.999869 41 0 0 14.762887 0.461538 0.02 -0.140014 7 6 198 158 60 60 0 0 AA 6.315881 21 0 575 0 KEEP - Mrgprx1 NO Spont_2 chr7 55424203 55424203 G C exonic Mrgprb5 synonymous SNV NM_207538:c.C153G:p.V51V exonic Mrgprb5 synonymous SNV uc009ham.1:c.C153G:p.V51V exonic ENSMUSG00000070551 synonymous SNV ENSMUST00000094389:c.C153G:p.V51V 7qB4 NA NA chr7 55424203 TAGxACT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 30 1 0 16.649216 0.5 0.02 -0.105242 6 6 174 174 60 60 0 0 GG 4.512228 15 0 425 0 KEEP - Mrgprb5 YES Spont_2 chr7 55454369 55454369 C T exonic Mrgprb4 synonymous SNV NM_205795:c.G180A:p.R60R exonic Mrgprb4 synonymous SNV uc009han.1:c.G180A:p.R60R exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.G180A:p.R60R 7qB4 NA NA chr7 55454369 ATTxCTA C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552849 0.552887 0.999931 59 1 0 16.26497 0.461538 0.02 -0.219238 7 6 206 173 60 60 0 0 CC 7.512868 25 0 693 0 KEEP - Mrgprb4 NO Spont_2 chr7 55644240 55644240 C T exonic Mrgprb8 synonymous SNV NM_207539:c.C288T:p.I96I exonic Mrgprb8 synonymous SNV uc009hao.2:c.C288T:p.I96I exonic ENSMUSG00000050870 synonymous SNV ENSMUST00000056676:c.C288T:p.I96I 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644240 CATxGAC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 152 1 0 57.912697 0.423077 0.02 1.337619 30 22 813 628 60 60 0 0 CC 19.462916 74 1 1902 26 KEEP + Mrgprb8 NO Spont_2 chr7 55644712 55644712 C T exonic Mrgprb8 nonsynonymous SNV NM_207539:c.C760T:p.P254S exonic Mrgprb8 nonsynonymous SNV uc009hao.2:c.C760T:p.P254S exonic ENSMUSG00000050870 nonsynonymous SNV ENSMUST00000056676:c.C760T:p.P254S 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644712 ATGxCTT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.58289 0.58293 0.999931 64 0 0 22.510289 0.346154 0.02 -0.228011 17 9 486 255 60 60 0 0 CC 7.519446 25 0 691 0 KEEP + Mrgprb8 NO Spont_2 chr7 55702613 55702613 T C exonic Mrgprb1 nonsynonymous SNV NM_205810:c.A920G:p.K307R exonic Mrgprb1 nonsynonymous SNV uc009hap.1:c.A920G:p.K307R exonic ENSMUSG00000070547 nonsynonymous SNV ENSMUST00000094384:c.A920G:p.K307R 7qB4 NA NA chr7 55702613 AGCxTGA T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 116 0 0 60.726579 0.538462 0.02 -0.342045 18 21 518 624 60 60 0 0 TT 19.550963 65 0 1806 0 KEEP - Mrgprb1 NO Spont_2 chr7 56133457 56133457 T A exonic E2f8 synonymous SNV NM_001013368:c.A306T:p.S102S exonic E2f8 synonymous SNV uc009haz.2:c.A306T:p.S102S exonic ENSMUSG00000046179 synonymous SNV ENSMUST00000058745:c.A306T:p.S102S 7qB4 NA NA chr7 56133457 TCCxGAT T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 141 0 0 38.963538 0.375 0.02 -0.350792 25 15 712 433 60 60 0 0 TT 23.149536 77 0 2102 0 KEEP - E2f8 NO Spont_2 chr7 56803423 56803423 T C exonic Nav2 synonymous SNV NM_175272:c.T3429C:p.S1143S exonic Nav2 synonymous SNV uc009hbm.2:c.T3429C:p.S1143S exonic ENSMUSG00000052512 synonymous SNV ENSMUST00000064395:c.T3429C:p.S1143S 7qB4 NA NA chr7 56803423 CAGxGGG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.999859 45 0 0 19.541034 0.409091 0.02 -0.192321 13 9 324 217 60 60 0 0 TT 5.405568 18 0 465 0 KEEP + Nav2 NO Spont_2 chr7 57484324 57484324 T G intronic Nell1 NA NA intronic Nell1 NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57484324 GTCxGCT T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139819 0.139832 0.999909 40 1 0 38.915615 1 0.02 -0.10522 0 12 0 332 0 60 0 0 TT 7.217961 24 0 656 0 KEEP + Nell1 NO Spont_2 chr7 57855795 57855795 G A UTR3 4933405O20Rik NA NA UTR3 4933405O20Rik NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57855795 AGAxAGT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076843 0.077336 0.993634 24 0 0 29.688175 1 0.02 -0.078925 0 9 0 254 0 60 0 0 GG 3.609479 12 0 337 0 KEEP + 4933405O20Rik NO Spont_2 chr7 58954328 58954328 A G intergenic "Slc17a6(dist=27832),Fancf(dist=161621)" NA NA intergenic "Slc17a6(dist=27832),AK195420(dist=48545)" NA NA intergenic "ENSMUSG00000030500(dist=27833),ENSMUSG00000078088(dist=47733)" NA NA 7qB5 "Score=0.932916;Name=No.87853,chr4:12160047" NA chr7 58954328 GAAxGTT A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 99 1 0 10.029581 1 0.02 -0.298191 0 3 0 86 0 37 0 0 AA 14.437559 48 0 1345 0 KEEP NA Slc17a6 NO Spont_2 chr7 59116908 59116908 G A exonic Fancf synonymous SNV NM_001115087:c.C717T:p.A239A exonic Fancf synonymous SNV uc012flg.1:c.C717T:p.A239A exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.C717T:p.A239A 7qB5 NA NA chr7 59116908 CTTxGCT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 107 5 0 117.950346 1 0.02 -0.315684 0 36 0 1008 0 60 0 0 GG 13.52681 45 0 1245 0 KEEP - Fancf NO Spont_2 chr7 59117508 59117508 A G exonic Fancf synonymous SNV NM_001115087:c.T117C:p.R39R exonic Fancf synonymous SNV uc012flg.1:c.T117C:p.R39R exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.T117C:p.R39R 7qB5 NA NA chr7 59117508 ATAxCGC A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 69 0 0 61.435083 1 0.02 -0.166496 0 19 0 524 0 60 0 0 AA 11.67874 43 1 1166 11 KEEP - Fancf NO Spont_2 chr7 59117648 59117648 C T upstream Fancf NA NA UTR5 Gas2 NA NA UTR5 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59117648 CATxCCG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 56 0 0 51.420779 1 0.02 -0.163881 0 16 0 438 0 60 0 0 CC 11.067771 37 0 1022 0 KEEP + Fancf NO Spont_2 chr7 59220735 59220735 G A intronic Gas2 NA NA UTR3 Gas2 NA NA UTR3 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59220735 TGAxCCT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 0.999998 58 0 0 33.530792 1 0.02 -0.140232 0 11 0 283 0 60 0 0 GG 10.223343 34 0 926 0 KEEP + Gas2 NO Spont_2 chr7 63027927 63027927 C G exonic Siglech nonsynonymous SNV NM_178706:c.C913G:p.H305D exonic Siglech nonsynonymous SNV uc009hdb.2:c.C865G:p.H289D exonic ENSMUSG00000051504 nonsynonymous SNV ENSMUST00000094360:c.C865G:p.H289D 7qB5 NA NA chr7 63027927 GCAxACG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120422 0.120436 0.999879 40 0 0 32.963251 1 0.02 -0.096455 0 10 0 282 0 60 0 0 CC 6.617305 22 0 614 0 KEEP + Siglech YES Spont_2 chr7 63068956 63068956 A T intronic Tubgcp5 NA NA intronic Tubgcp5 NA NA intronic ENSMUSG00000033790 NA NA 7qB5 NA NA chr7 63068956 TGCxGGC A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 87 2 0 65.628606 1 0.02 -0.175384 0 20 0 561 0 60 0 0 AA 14.738777 49 0 1371 0 KEEP + Tubgcp5 NO Spont_2 chr7 63147515 63147515 G C intronic Cyfip1 NA NA exonic Cyfip1 nonsynonymous SNV uc009hdj.1:c.G1267C:p.G423R exonic ENSMUSG00000030447 nonsynonymous SNV ENSMUST00000168271:c.G1267C:p.G423R 7qB5 NA NA chr7 63147515 ATCxGAG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 0.999999 67 3 0 48.008236 1 0.02 -0.166491 0 16 0 404 0 60 0 0 GG 10.824513 36 0 965 0 KEEP + Cyfip1 YES Spont_2 chr7 63181924 63181924 G A intronic Cyfip1 NA NA intronic "Cyfip1,Shyc" NA NA intronic ENSMUSG00000030447 NA NA 7qB5 NA NA chr7 63181924 GGGxGGG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099707 0.099721 0.999863 37 0 0 28.986071 1 0.02 -0.08768 0 9 0 247 0 60 0 0 GG 6.015121 20 0 549 0 KEEP + Cyfip1 NO Spont_2 chr7 63327733 63327733 A G exonic Herc2 synonymous SNV NM_010418:c.A258G:p.E86E exonic "Herc2,rjs" synonymous SNV uc009hdw.1:c.A258G:p.E86E exonic ENSMUSG00000030451 synonymous SNV ENSMUST00000041015:c.A144G:p.E48E 7qB5 NA NA chr7 63327733 AGAxGAG A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196309 0.196312 0.999988 53 0 0 46.666129 1 0.02 -0.122742 0 14 0 400 0 60 0 0 AA 8.121873 27 0 763 0 KEEP + Herc2 NO Spont_2 chr7 63440089 63440089 T C intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440089 TGGxTGT T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229143 0.229173 0.999869 42 0 0 51.2492 1 0.02 -0.131557 0 15 0 441 0 60 0 0 TT 6.315743 21 0 572 0 KEEP + Herc2 NO Spont_2 chr7 63440091 63440091 G A intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440091 GTTxTGA G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229142 0.229173 0.999863 41 0 0 47.844014 1 0.02 -0.131522 0 15 0 407 0 60 0 0 GG 6.015478 20 0 556 0 KEEP + Herc2 NO Spont_2 chr7 63585644 63585644 G A intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63585644 ATTxAGC G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 37 0 0 36.341116 1 0.02 -0.114003 0 11 0 311 0 60 0 0 GG 5.113871 17 0 485 0 KEEP + Oca2 NO Spont_2 chr7 63612621 63612621 C T intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63612621 TTAxTCG C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139822 0.139832 0.999931 52 2 0 36.841729 1 0.02 -0.105237 0 11 0 316 0 60 0 0 CC 7.520355 25 0 710 0 KEEP + Oca2 NO Spont_2 chr7 64677117 64677117 G A exonic Gabra5 synonymous SNV NM_176942:c.C720T:p.S240S exonic Gabra5 synonymous SNV uc009heb.1:c.C720T:p.S240S exonic ENSMUSG00000055078 synonymous SNV ENSMUST00000068456:c.C720T:p.S240S 7qC NA NA chr7 64677117 TGTxCTG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.229148 0.229173 0.999892 54 0 0 47.844026 1 0.02 -0.131522 0 15 0 407 0 60 0 0 GG 6.919216 23 0 662 0 KEEP - Gabra5 NO Spont_2 chr7 64708281 64708281 C T intronic Gabra5 NA NA intronic Gabra5 NA NA intronic ENSMUSG00000055078 NA NA 7qC NA NA chr7 64708281 ACAxGCC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.353904 0.353947 0.999879 45 3 0 54.09594 1 0.02 -0.166591 0 17 0 460 0 60 0 0 CC 6.614702 22 0 581 0 KEEP - Gabra5 NO Spont_2 chr8 105197937 105197937 T A exonic Cdh11 nonsynonymous SNV NM_009866:c.A298T:p.I100F exonic Cdh11 nonsynonymous SNV uc009mzu.1:c.A298T:p.I100F exonic ENSMUSG00000031673 nonsynonymous SNV ENSMUST00000075190:c.A298T:p.I100F 8qD2 "Score=0.936759;Name=No.103939,chr8:19990962" NA chr8 105197937 AAAxGGT T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 139 6 9 19.650101 0.183673 0.02 -0.429683 40 9 1111 255 60 38 0 0 TT 18.345633 61 0 1658 0 KEEP - Cdh11 NO Spont_2 chr8 113122909 113122909 G A exonic Hydin synonymous SNV NM_172916:c.G14049A:p.L4683L exonic Hydin synonymous SNV uc009nks.1:c.G14049A:p.L4683L exonic ENSMUSG00000059854 synonymous SNV ENSMUST00000043141:c.G14049A:p.L4683L 8qE1 NA NA chr8 113122909 CCTxCTC G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 142 4 0 8.778331 0.089286 0.02 1.106203 51 5 1513 137 60 60 0 0 GG 14.438436 48 0 1362 0 KEEP + Hydin NO Spont_2 chr8 113521571 113521571 T G exonic Ddx19a nonsynonymous SNV NM_007916:c.A53C:p.K18T exonic Ddx19a nonsynonymous SNV uc009nll.2:c.A53C:p.K18T exonic ENSMUSG00000015023 nonsynonymous SNV ENSMUST00000040416:c.A53C:p.K18T 8qE1 NA NA chr8 113521571 GACxTGA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 227 0 0 12.970363 0.108434 0.02 0.943636 74 9 2081 209 60 60 0 0 TT 28.867004 96 0 2645 0 KEEP - Ddx19a NO Spont_2 chr8 124961823 124961823 C A exonic Mvd nonsynonymous SNV NM_138656:c.G510T:p.E170D exonic Mvd nonsynonymous SNV uc009nss.2:c.G510T:p.E170D exonic ENSMUSG00000006517 nonsynonymous SNV ENSMUST00000006692:c.G510T:p.E170D 8qE1 NA NA chr8 124961823 CCAxTCC C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 211 5 0 7.700202 0.060241 0.02 0.772351 78 5 2206 135 60 60 0 0 CC 30.592586 102 0 2745 0 KEEP - Mvd NO Spont_2 chr8 125925090 125925090 G C exonic Tcf25 nonsynonymous SNV NM_001037878:c.G1987C:p.V663L exonic Tcf25 nonsynonymous SNV uc012gmr.1:c.G1912C:p.V638L exonic ENSMUSG00000001472 nonsynonymous SNV ENSMUST00000108839:c.G1912C:p.V638L 8qE1 NA NA chr8 125925090 GAGxTGC G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 191 0 0 61.302813 0.324324 0.02 1.23446 50 24 1419 701 60 60 0 0 GG 21.955006 73 0 2008 0 KEEP + Tcf25 YES Spont_2 chr8 16158219 16158219 G T exonic Csmd1 nonsynonymous SNV NM_053171:c.C3721A:p.L1241I exonic Csmd1 nonsynonymous SNV uc009kzp.1:c.C3721A:p.L1241I exonic ENSMUSG00000060924 nonsynonymous SNV ENSMUST00000110789:c.C2626A:p.L876I 8qA1.1 NA NA chr8 16158219 AGAxAAC G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 101 0 0 11.458633 0.136364 0.02 -0.385847 38 6 1113 162 60 60 0 0 GG 12.331185 41 0 1154 0 KEEP - Csmd1 NO Spont_2 chr8 18671223 18671223 C G exonic Mcph1 nonsynonymous SNV NM_173189:c.C2066G:p.A689G exonic Mcph1 nonsynonymous SNV uc012gae.1:c.C1544G:p.A515G exonic ENSMUSG00000039842 nonsynonymous SNV ENSMUST00000039412:c.C2066G:p.A689G 8qA1.3 NA NA chr8 18671223 TTGxCCG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 140 0 0 29.033799 0.189189 0.02 1.145343 60 14 1715 379 60 60 0 0 CC 14.13628 47 0 1298 0 KEEP + Mcph1 YES Spont_2 chr8 18934296 18934296 A G exonic Xkr5 nonsynonymous SNV NM_001113350:c.T1229C:p.L410P exonic Xkr5 nonsynonymous SNV uc009kzw.2:c.T731C:p.L244P exonic ENSMUSG00000039814 nonsynonymous SNV ENSMUST00000055503:c.T731C:p.L244P 8qA1.3 NA NA chr8 18934296 GCGxGTT A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 220 0 0 30.482451 0.145833 0.02 1.034227 82 14 2298 411 60 60 0 0 AA 23.724649 79 0 2142 0 KEEP - Xkr5 NO Spont_2 chr8 19537196 19537196 G C intergenic "Defb7(dist=39421),Gm21119(dist=192380)" NA NA intergenic "Defb7(dist=39421),AK134636(dist=145074)" NA NA ncRNA_exonic ENSMUSG00000083218 NA NA 8qA1.3 NA NA chr8 19537196 TCTxACT G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.490511 0.490544 0.999931 56 1 0 11.956998 0.217391 0.02 -0.201718 18 5 527 148 60 60 0 0 GG 7.219774 24 0 687 0 KEEP NA Defb7 YES Spont_2 chr8 20019797 20019797 G A ncRNA_intronic "2610005L07Rik,6820431F20Rik" NA NA exonic Gm10348 stopgain SNV uc009lbg.1:c.C478T:p.R160X ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20019797 ATCxGAA G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 323 7 57 16.531914 0.089109 0.02 2.496247 92 9 2486 254 67 60 0 0 GG 42.987507 143 0 3781 0 KEEP - 2610005L07Rik NO Spont_2 chr8 72347822 72347822 G C exonic Lpar2 nonsynonymous SNV NM_020028:c.G361C:p.A121P exonic Lpar2 nonsynonymous SNV uc009lxv.1:c.G361C:p.A121P exonic;splicing ENSMUSG00000031861;ENSMUSG00000031861(ENSMUST00000066018:exon3:c.357+2G>C) nonsynonymous SNV ENSMUST00000034325:c.G361C:p.A121P 8qB3.3 NA NA chr8 72347822 CTGxCCA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 72 0 0 11.133109 0.181818 0.02 -0.304731 27 6 719 150 60 60 0 0 GG 10.18044 34 0 917 0 KEEP + Lpar2 YES Spont_2 chr8 85388276 85388276 G C exonic Rnf150 nonsynonymous SNV NM_177378:c.G368C:p.G123A exonic Rnf150 nonsynonymous SNV uc009mjq.1:c.G368C:p.G123A exonic ENSMUSG00000047747 nonsynonymous SNV ENSMUST00000078525:c.G368C:p.G123A 8qC2 NA NA chr8 85388276 AGGxCAA G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 136 0 0 29.428464 0.232143 0.02 1.293734 43 13 1228 364 60 60 0 0 GG 16.817427 56 0 1512 0 KEEP + Rnf150 YES Spont_2 chr8 87535210 87535210 C G intronic Best2 NA NA intronic Best2 NA NA intronic ENSMUSG00000052819 NA NA 8qC3 NA NA chr8 87535210 ATCxAAC C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.25975 0.260965 0.995343 32 0 0 8.389945 0.333333 0.02 -0.140249 8 4 232 98 60 60 0 1 CC 4.19102 14 0 373 0 KEEP - Best2 YES Spont_2 chr8_random 690820 690820 G A intergenic "Tsnax(dist=89305),NONE(dist=NONE)" NA NA intergenic "Tsnax(dist=89305),AK029792(dist=56894)" NA NA downstream ENSMUSG00000074455 NA NA NA "Score=0.989584;Name=No.105235,chr8_random:819725" NA chr8_random 690820 TTAxACT G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1339 2 202 38.243421 0.050773 0.02 11.86506 430 23 12778 667 46 40 0 0 GG 192.514543 640 0 18378 0 KEEP NA Tsnax NO Spont_2 chr9 100853963 100853963 G T exonic Stag1 nonsynonymous SNV NM_009282:c.G3505T:p.D1169Y exonic Stag1 nonsynonymous SNV uc009rfa.1:c.G3505T:p.D1169Y exonic ENSMUSG00000037286 nonsynonymous SNV ENSMUST00000155108:c.G446T:p.G149V 9qE4 NA NA chr9 100853963 AAGxACA G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 143 1 0 13.556344 0.148936 0.02 -0.412182 40 7 1165 188 60 60 0 0 GG 20.151306 67 0 1890 0 KEEP + Stag1 NO Spont_2 chr9 107833828 107833828 A C exonic Actl11 synonymous SNV NM_026338:c.A3018C:p.A1006A exonic 4921517D21Rik synonymous SNV uc009rnj.1:c.A3018C:p.A1006A exonic ENSMUSG00000066368 synonymous SNV ENSMUST00000085073:c.A3018C:p.A1006A 9qF1 NA NA chr9 107833828 GGCxCCC A C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 101 0 0 17.962387 0.181818 0.02 -0.385701 36 8 960 232 60 60 0 0 AA 12.629345 42 0 1123 0 KEEP + Actl11 NO Spont_2 chr9 107833930 107833930 C G exonic Actl11 synonymous SNV NM_026338:c.C3120G:p.G1040G exonic 4921517D21Rik synonymous SNV uc009rnj.1:c.C3120G:p.G1040G exonic ENSMUSG00000066368 synonymous SNV ENSMUST00000085073:c.C3120G:p.G1040G 9qF1 NA NA chr9 107833930 TGGxCAC C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.387354 0.387407 0.999863 42 0 0 14.768612 0.3 0.02 -0.174848 14 6 384 172 60 60 0 0 CC 6.013222 20 0 542 0 KEEP + Actl11 YES Spont_2 chr9 109595752 109595752 T G exonic Fbxw18 nonsynonymous SNV NM_001033794:c.A562C:p.T188P exonic Fbxw18 nonsynonymous SNV uc009rso.1:c.A562C:p.T188P exonic ENSMUSG00000074059 nonsynonymous SNV ENSMUST00000098359:c.A562C:p.T188P 9qF2 NA NA chr9 109595752 TAGxCGC T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 120 0 0 8.051558 0.088889 0.02 -0.394604 41 4 1140 120 60 60 0 0 TT 16.23444 54 0 1450 0 KEEP - Fbxw18 NO Spont_2 chr9 114655742 114655742 A G UTR3 Cmtm6 NA NA UTR3 Cmtm6 NA NA UTR3 ENSMUSG00000032434 NA NA 9qF3 NA NA chr9 114655742 GTGxCCT A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 88 0 0 21.39881 0.272727 0.02 -0.289333 24 9 647 255 60 60 0 0 AA 8.44852 36 1 964 22 KEEP + Cmtm6 NO Spont_2 chr9 115869498 115869498 C T exonic Gadl1 synonymous SNV NM_028638:c.C753T:p.C251C exonic Gadl1 synonymous SNV uc009ryr.2:c.C753T:p.C251C exonic ENSMUSG00000056880 synonymous SNV ENSMUST00000121770:c.C753T:p.C251C 9qF3 NA NA chr9 115869498 CTGxGCC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 202 1 0 124.036111 0.633803 0.02 1.055743 26 45 652 1228 60 60 0 0 CC 31.789491 106 0 2696 0 KEEP + Gadl1 NO Spont_2 chr9 119867820 119867820 G T exonic Ttc21a stopgain SNV NM_028735:c.G2335T:p.E779X exonic Ttc21a stopgain SNV uc009sbr.1:c.G736T:p.E246X exonic ENSMUSG00000032514 stopgain SNV ENSMUST00000035100:c.G2335T:p.E779X 9qF4 NA NA chr9 119867820 TACxAGG G T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 99 0 0 34.920158 0.368421 0.02 -0.333119 24 14 636 391 60 60 0 0 GG 12.620225 42 0 1062 0 KEEP + Ttc21a NO Spont_2 chr9 123573856 123573856 C A intronic Slc6a20a NA NA intronic Slc6a20a NA NA intronic ENSMUSG00000036814 NA NA 9qF4 NA NA chr9 123573856 TTAxCCG C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.196294 0.196312 0.999909 40 1 0 8.570622 0.285714 0.02 -0.12275 10 4 288 103 60 37 0 0 CC 7.218401 24 0 663 0 KEEP - Slc6a20a NO Spont_2 chr9 19180132 19180132 G A exonic Olfr847 synonymous SNV NM_146525:c.C192T:p.S64S exonic Olfr847 synonymous SNV uc009ohi.1:c.C192T:p.S64S exonic ENSMUSG00000059821 synonymous SNV ENSMUST00000079620:c.C192T:p.S64S 9qA2 NA NA chr9 19180132 CTTxGAG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 70 0 0 15.041509 0.194444 0.02 -0.315718 29 7 847 194 60 60 0 0 GG 8.120951 27 0 754 0 KEEP - Olfr847 NO Spont_2 chr9 19725698 19725698 T G UTR3 Olfr77 NA NA UTR3 Olfr77 NA NA UTR3 ENSMUSG00000051118 NA NA 9qA3 NA NA chr9 19725698 TTTxGTG T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 98 2 0 17.551113 0.163265 0.02 -0.429705 41 8 1156 232 60 60 0 0 TT 12.018163 40 0 1075 0 KEEP + Olfr77 NO Spont_2 chr9 22216312 22216312 A T intronic 9530077C05Rik NA NA ncRNA_intronic mKIAA0895 NA NA UTR3 ENSMUSG00000032239 NA NA 9qA3 NA NA chr9 22216312 GCAxGAG A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 190 0 0 47.263174 0.244186 0.02 0.941032 65 21 1876 580 60 60 0 0 AA 27.967063 93 0 2583 0 KEEP + 9530077C05Rik NO Spont_2 chr9 32231524 32231524 T G exonic Fli1 nonsynonymous SNV NM_008026:c.A1196C:p.N399T exonic Fli1 nonsynonymous SNV uc009orz.1:c.A1196C:p.N399T exonic ENSMUSG00000016087 nonsynonymous SNV ENSMUST00000016231:c.A1196C:p.N399T 9qA4 NA NA chr9 32231524 AAGxTCA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 75 0 0 16.136826 0.212121 0.02 -0.306551 26 7 715 202 60 60 0 0 TT 9.923869 33 0 897 0 KEEP - Fli1 NO Spont_2 chr9 35013900 35013900 T A intronic Foxred1 NA NA intronic Foxred1 NA NA intronic ENSMUSG00000039048 NA NA 9qA4 NA NA chr9 35013900 AATxAAA T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL UNCOVERED 0.13983 0.139832 0.999988 41 0 0 7.201629 0.25 0.02 -0.105221 9 3 243 87 60 60 0 0 TT 8.113506 27 0 706 0 KEEP - Foxred1 NO Spont_2 chr9 42813623 42813623 T G intronic Arhgef12 NA NA intronic Arhgef12 NA NA intronic ENSMUSG00000059495 NA NA 9qA5.1 NA NA chr9 42813623 AACxTAC T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 208 0 0 11.083992 0.072917 0.02 0.853653 89 7 2557 186 60 60 0 0 TT 19.821262 66 0 1806 0 KEEP - Arhgef12 NO Spont_2 chr9 44156494 44156494 G A UTR3 Vps11 NA NA UTR3 Vps11 NA NA UTR3 ENSMUSG00000032127 NA NA 9qA5.2 NA NA chr9 44156494 GGAxCTG G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 79 0 0 10.998591 0.172414 0.02 -0.254339 24 5 704 144 60 60 0 0 GG 11.116582 37 0 1012 0 KEEP - Vps11 NO Spont_2 chr9 58736758 58736758 T G intronic Neo1 NA NA intronic Neo1 NA NA intronic ENSMUSG00000032340 NA NA 9qB NA NA chr9 58736758 AAAxTCA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 62 0 0 8.741808 0.16 0.02 -0.218763 21 4 531 116 60 60 0 0 TT 6.916306 23 0 621 0 KEEP - Neo1 NO Spont_2 chr9 63328438 63328438 C T exonic Iqch synonymous SNV NM_030068:c.G2493A:p.V831V exonic Iqch synonymous SNV uc009qbd.2:c.G2493A:p.V831V exonic ENSMUSG00000037801 synonymous SNV ENSMUST00000171243:c.G2376A:p.V792V 9qC NA NA chr9 63328438 ATCxACT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 91 2 0 33.746441 0.341463 0.02 -0.359569 27 14 802 385 60 60 0 0 CC 11.731517 39 0 1107 0 KEEP + Iqch NO Spont_2 chrX 121246576 121246576 G A exonic Vmn2r121 synonymous SNV NM_001100616:c.C492T:p.F164F exonic Vmn2r121 synonymous SNV uc009uep.1:c.C492T:p.F164F exonic ENSMUSG00000072049 synonymous SNV ENSMUST00000071277:c.C492T:p.F164F XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121246576 AAAxAAA G A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 660 43 4 15.825551 0.04329 0.02 6.341604 221 10 6525 289 60 60 0 0 GG 83.619529 278 0 7980 0 KEEP - Vmn2r121 NO Spont_2 chrX 149344294 149344294 C T intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA ncRNA_intronic ENSMUSG00000083440 NA NA XqF3 NA NA chrX 149344294 CTGxTGT C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 401 4 136 62.731838 0.204225 0.02 2.145193 113 29 3228 801 46 46 0 0 CC 42.399266 141 0 3913 0 KEEP NA Gpr143 NO Spont_2 chrX 159341472 159341472 T C exonic Ctps2 nonsynonymous SNV NM_001168568:c.T68C:p.I23T exonic Ctps2 nonsynonymous SNV uc009uuo.2:c.T68C:p.I23T exonic ENSMUSG00000031360 nonsynonymous SNV ENSMUST00000033727:c.T68C:p.I23T XqF4 NA NA chrX 159341472 GCAxTGG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 108 0 0 9.658849 0.092593 0.02 1.418654 49 5 1368 145 60 60 0 0 TT 11.126773 37 0 1000 0 KEEP + Ctps2 NO Spont_2 chrX 30480089 30480089 C T intergenic "Gm14345(dist=187058),Gm2799(dist=118222)" NA NA intergenic "Gm14351(dist=187058),Gm2799(dist=118222)" NA NA intergenic "ENSMUSG00000079653(dist=104437),ENSMUSG00000078333(dist=118307)" NA NA XqA3.1 "Score=0.980237;Name=No.106626,chrX:3042147" NA chrX 30480089 CATxGAC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1731 10 282 68.707864 0.061493 0.02 16.149503 641 42 17383 1169 60 39 0 0 CC 181.160863 603 0 16188 0 KEEP NA Gm14345 NO Spont_2 chrX 32129829 32129829 T G UTR3 Gm21950 NA NA UTR3 Gm14374 NA NA UTR3 ENSMUSG00000078323 NA NA XqA3.1 "Score=0.987593;Name=No.106794,chrX:3403988" NA chrX 32129829 ATTxTAG T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1417 5 324 33.004129 0.043573 0.02 12.215048 439 20 12618 591 47 20 0 0 TT 162.725473 541 0 15112 0 KEEP - Gm21950 NO Spont_2 chrX 35038104 35038104 T G intronic Rhox3g NA NA intronic "Rhox3g-ps,Rhox3h" NA NA ncRNA_intronic ENSMUSG00000080933 NA NA XqA3.3 "Score=0.973868;Name=No.112633,chrX:34831506" NA chrX 35038104 ACTxTTA T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 172 0 0 70.70197 0.318681 0.02 1.094168 62 29 1758 816 60 60 0 0 TT 16.207676 54 0 1475 0 KEEP - Rhox3g NO Spont_2 chrX 38646604 38646604 A G intergenic "Cypt14(dist=1429823),Gria3(dist=107874)" NA NA intergenic "Cypt14(dist=1429823),Gria3(dist=107427)" NA NA downstream ENSMUSG00000081880 NA NA XqA3.3 "Score=0.937075;Name=No.105006,chr8:78235369" NA chrX 38646604 TCAxAAG A G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 215 3 12 9.101738 0.063291 0.02 1.07662 74 5 2098 148 60 37 0 0 AA 15.305636 51 0 1400 0 KEEP NA Cypt14 NO Spont_2 chrX 3907879 3907879 C T exonic "Gm14347,Gm21950,Gm21951" synonymous SNV NM_001085543:c.C784T:p.L262L exonic Gm14347 synonymous SNV uc009sko.1:c.C784T:p.L262L exonic ENSMUSG00000078217 synonymous SNV ENSMUST00000105015:c.C784T:p.L262L XqA1.1 "Score=0.991098;Name=No.106965,chrX:4550554" NA chrX 3907879 ACAxTAA C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1982 7 969 74.513415 0.09949 0.02 8.607931 353 39 10327 1110 38 38 0 0 CC 255.317711 849 0 23673 0 KEEP + Gm14347 NO Spont_2 chrX 5045422 5045422 C A exonic Mycs stopgain SNV NM_010850:c.G721T:p.E241X exonic Mycs stopgain SNV uc009sks.2:c.G721T:p.E241X exonic ENSMUSG00000044597 stopgain SNV ENSMUST00000058404:c.G721T:p.E241X XqA1.1 "Score=0.898765;Name=No.106181,chr9:107095137" NA chrX 5045422 CTTxCTC C A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 112 1 0 20.160854 0.163934 0.02 1.062491 51 10 1463 272 60 60 0 0 CC 13.234993 44 0 1239 0 KEEP - Mycs NO Spont_2 chrX 71482486 71482486 T G exonic Flna nonsynonymous SNV NM_010227:c.A2919C:p.K973N exonic Flna nonsynonymous SNV uc009tny.1:c.A2919C:p.K973N exonic ENSMUSG00000031328 nonsynonymous SNV ENSMUST00000033699:c.A2919C:p.K973N XqA7.3 NA NA chrX 71482486 GATxTTG T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 229 0 0 49.328603 0.191304 0.02 2.775836 93 22 2663 632 60 60 0 0 TT 23.461173 78 0 2168 0 KEEP - Flna NO Spont_2 chrX 7241036 7241036 C T exonic Prickle3 stopgain SNV NM_175097:c.C280T:p.Q94X exonic Prickle3 stopgain SNV uc009slw.1:c.C241T:p.Q81X exonic ENSMUSG00000031145 stopgain SNV ENSMUST00000123172:c.C241T:p.Q81X XqA1.1 NA NA chrX 7241036 AGCxAGC C T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 100 2 0 42.498973 0.414634 0.02 -0.367872 24 17 677 465 60 60 0 0 CC 12.022448 40 0 1111 0 KEEP + Prickle3 NO Spont_2 chrX 82018168 82018168 T G intronic Dmd NA NA UTR5 Dmd NA NA intronic ENSMUSG00000045103 NA NA XqC1 NA NA chrX 82018168 AGGxTTG T G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 176 0 0 28.248694 0.166667 0.02 1.109587 65 13 1794 373 60 60 0 0 TT 15.333489 51 0 1377 0 KEEP + Dmd NO Spont_2 chrX 8326187 8326187 A T exonic Ssx9 nonsynonymous SNV NM_199063:c.A131T:p.Q44L exonic Ssx9 nonsynonymous SNV uc009spf.2:c.A131T:p.Q44L exonic ENSMUSG00000035371 nonsynonymous SNV ENSMUST00000103001:c.A131T:p.Q44L XqA1.1 "Score=0.912157;Name=No.107398,chrX:7889956" NA chrX 8326187 GGCxGAA A T 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 770 5 17 43.247474 0.074074 0.02 7.714811 300 24 8563 689 60 60 0 0 AA 80.900456 269 0 7441 0 KEEP + Ssx9 NO Spont_2 chrX 89735384 89735384 G C exonic Gm5941 nonsynonymous SNV NM_001034103:c.G18C:p.K6N exonic Gm5941 nonsynonymous SNV uc009tso.1:c.G18C:p.K6N exonic ENSMUSG00000071726 nonsynonymous SNV ENSMUST00000096371:c.G18C:p.K6N XqC2 "Score=0.954682;Name=No.113666,chrX:92924289" NA chrX 89735384 TAAxAAG G C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 393 0 0 95.999743 0.203791 0.02 5.404803 168 43 4948 1218 60 60 0 0 GG 37.936912 133 1 3807 19 KEEP + Gm5941 YES Spont_2 chrX 91602065 91602065 T A intergenic "Klhl15(dist=83211),Apoo(dist=10384)" NA NA exonic 4932442L08Rik nonsynonymous SNV uc009ttj.1:c.A497T:p.Q166L exonic ENSMUSG00000043549 nonsynonymous SNV ENSMUST00000113903:c.A497T:p.Q166L XqC3 NA NA chrX 91602065 GGCxGGC T A 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 121 0 0 20.216834 0.204545 0.02 -0.394588 35 9 986 256 60 60 0 0 TT 15.608339 52 0 1395 0 KEEP - Klhl15 NO Spont_2 chrX 97735390 97735390 T C exonic Dgat2l6 nonsynonymous SNV NM_001114084:c.T134C:p.L45S exonic Dgat2l6 nonsynonymous SNV uc012hmt.1:c.T134C:p.L45S exonic ENSMUSG00000067597 nonsynonymous SNV ENSMUST00000037541:c.T134C:p.L45S XqC3 NA NA chrX 97735390 CCTxATG T C 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 492 0 0 118.79142 0.21875 0.02 5.595663 175 49 4874 1465 60 60 0 0 TT 47.1109 167 1 4503 29 KEEP + Dgat2l6 NO Spont_2 chrX 98513453 98513453 C G exonic Nlgn3 nonsynonymous SNV NM_172932:c.C1030G:p.P344A exonic Nlgn3 nonsynonymous SNV uc009txj.2:c.C1030G:p.P344A exonic ENSMUSG00000031302 nonsynonymous SNV ENSMUST00000130555:c.C970G:p.P324A XqD NA NA chrX 98513453 CAGxCAG C G 4-Mef-R-P_1 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 114 0 0 16.1965 0.123077 0.02 1.223648 57 8 1619 229 60 60 0 0 CC 13.534008 45 0 1235 0 KEEP + Nlgn3 YES Spont_3 chr10 60235297 60235297 T G exonic Unc5b nonsynonymous SNV NM_029770:c.A1881C:p.E627D exonic Unc5b nonsynonymous SNV uc007ffd.1:c.A870C:p.E290D exonic ENSMUSG00000020099 nonsynonymous SNV ENSMUST00000105458:c.A1848C:p.E616D 10qB4 NA NA chr10 60235297 GACxTCA T G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 165 0 0 26.195939 0.1625 0.02 1.091981 67 13 1938 354 60 60 0 0 TT 19.55075 65 0 1812 0 KEEP - Unc5b NO Spont_3 chr11 107655651 107655651 C T exonic Cacng4 nonsynonymous SNV NM_019431:c.G128A:p.G43D exonic Cacng4 nonsynonymous SNV uc007maz.1:c.G128A:p.G43D exonic ENSMUSG00000020723 nonsynonymous SNV ENSMUST00000021066:c.G128A:p.G43D 11qE1 NA NA chr11 107655651 GTGxCGT C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 112 0 0 41.350932 0.46875 0.02 -0.340961 17 15 485 438 60 60 0 0 CC 15.272463 51 0 1310 0 KEEP - Cacng4 NO Spont_3 chr11 118850161 118850161 C T exonic Enpp7 nonsynonymous SNV NM_001030291:c.C326T:p.T109M exonic Enpp7 nonsynonymous SNV uc007mpr.1:c.C326T:p.T109M exonic ENSMUSG00000046697 nonsynonymous SNV ENSMUST00000092373:c.C326T:p.T109M 11qE2 NA NA chr11 118850161 CCAxGCT C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 79 0 0 59.406245 0.5 0.02 -0.384571 22 22 496 621 60 60 0 0 CC 8.405867 28 0 649 0 KEEP + Enpp7 NO Spont_3 chr11 4047678 4047678 G C intronic Ccdc157 NA NA intronic Ccdc157 NA NA intronic ENSMUSG00000051427 NA NA 11qA1 NA NA chr11 4047678 ATGxGGG G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641339 0.641347 0.999988 69 2 0 48.775287 0.62963 0.02 -0.236787 10 17 299 484 60 60 0 0 GG 8.121637 27 0 758 0 KEEP - Ccdc157 YES Spont_3 chr11 75481785 75481785 C G exonic Myo1c nonsynonymous SNV NM_001080774:c.C1795G:p.P599A exonic Myo1c nonsynonymous SNV uc007kem.1:c.C1795G:p.P599A exonic ENSMUSG00000017774 nonsynonymous SNV ENSMUST00000057572:c.C1900G:p.P634A 11qB5 NA NA chr11 75481785 CAGxCGG C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 100 3 0 58.090883 0.477273 0.02 -0.412187 23 21 664 613 60 60 0 0 CC 14.136318 47 0 1302 0 KEEP + Myo1c YES Spont_3 chr11 97352463 97352463 A T exonic Arhgap23 stopgain SNV NM_021493:c.A2704T:p.K902X exonic Arhgap23 stopgain SNV uc007lec.1:c.A2704T:p.K902X exonic ENSMUSG00000049807 stopgain SNV ENSMUST00000142465:c.A1804T:p.K602X 11qD NA NA chr11 97352463 GACxAGG A T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 210 4 0 90.463141 0.364583 0.02 1.050895 61 35 1708 1011 60 60 0 0 AA 22.255375 74 0 2021 0 KEEP + Arhgap23 NO Spont_3 chr12 103467076 103467076 T C intronic Slc24a4 NA NA intronic Slc24a4 NA NA intronic ENSMUSG00000041771 NA NA 12qE NA NA chr12 103467076 CTCxCTC T C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.196311 0.196312 0.999997 51 0 0 7.032574 0.272727 0.02 -0.122518 8 3 229 84 60 60 0 0 TT 8.071952 31 1 667 10 KEEP + Slc24a4 NO Spont_3 chr12 113848947 113848947 G A exonic Inf2 nonsynonymous SNV NM_198411:c.G3013A:p.D1005N exonic Inf2 nonsynonymous SNV uc007pet.1:c.G1414A:p.D472N exonic ENSMUSG00000037679 nonsynonymous SNV ENSMUST00000039111:c.G3013A:p.D1005N 12qF1 NA NA chr12 113848947 ATCxATG G A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 57 1 0 75.258329 0.958333 0.02 -0.210478 1 23 30 661 60 60 0 0 GG 8.41297 28 0 710 0 KEEP + Inf2 NO Spont_3 chr12 89265776 89265776 C A intergenic "Gm2042(dist=66650),Gm21319(dist=54389)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265776 TTCxAGA C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 222 7 84 6.927604 0.097561 0.02 -0.359559 37 4 1092 107 55 29 0 0 CC 42.407478 141 0 3985 0 KEEP - Gm2042 NO Spont_3 chr12 89265800 89265800 T C intergenic "Gm2042(dist=66674),Gm21319(dist=54365)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265800 AAAxGGA T C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 280 7 83 12.831046 0.152174 0.02 -0.403295 39 7 1090 180 60 37 0 0 TT 52.605102 175 0 4658 0 KEEP - Gm2042 NO Spont_3 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 255 8 38 19.375861 0.18 0.02 1.54406 41 9 1158 253 60 37 0 0 TT 54.737132 182 0 4974 0 KEEP - Gm2042 NO Spont_3 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 75 3 0 11.830589 0.263158 0.02 -0.175403 14 5 410 142 60 37 0 0 CC 13.23384 44 0 1211 0 KEEP - Gm2042 NO Spont_3 chr13 105653752 105653752 G C exonic Fam159b synonymous SNV NM_029984:c.C42G:p.L14L exonic Fam159b synonymous SNV uc007rto.1:c.C42G:p.L14L exonic ENSMUSG00000042655 synonymous SNV ENSMUST00000043061:c.C42G:p.L14L 13qD1 NA NA chr13 105653752 GTTxAGG G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 77 0 0 34.072844 0.371429 0.02 -0.306924 22 13 650 379 60 60 0 0 GG 9.626335 32 0 913 0 KEEP - Fam159b YES Spont_3 chr13 4267690 4267690 G T intronic Akr1c12 NA NA intronic Akr1c12 NA NA intronic ENSMUSG00000021211 NA NA 13qA1 NA NA chr13 4267690 AATxAAA G T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999997 52 0 0 9.684048 0.4 0.02 -0.096463 6 4 182 107 60 60 0 0 GG 9.626662 32 0 920 0 KEEP - Akr1c12 NO Spont_3 chr13 89844494 89844494 G T exonic Vcan nonsynonymous SNV NM_001081249:c.C1951A:p.L651I exonic Vcan nonsynonymous SNV uc007rjg.1:c.C1951A:p.L651I exonic ENSMUSG00000021614 nonsynonymous SNV ENSMUST00000022114:c.C1951A:p.L651I 13qC3 NA NA chr13 89844494 TAAxATG G T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457756 0.457757 0.999998 60 2 0 16.062806 0.318182 0.02 -0.192927 15 7 446 187 60 60 0 0 GG 10.228377 34 0 978 0 KEEP - Vcan NO Spont_3 chr14 21834265 21834265 C A exonic Vcl synonymous SNV NM_009502:c.C2005A:p.R669R exonic Vcl synonymous SNV uc007skz.1:c.C2005A:p.R669R exonic ENSMUSG00000021823 synonymous SNV ENSMUST00000022369:c.C2005A:p.R669R 14qA3 NA NA chr14 21834265 GCCxGAG C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999999 56 0 0 17.2703 0.545455 0.02 -0.096471 5 6 147 177 60 60 0 0 CC 10.520288 35 0 909 0 KEEP + Vcl NO Spont_3 chr14 52032935 52032935 T C exonic Vmn2r88 synonymous SNV NM_011686:c.T429C:p.G143G exonic "Vmn2r-ps160,Vmn2r88" synonymous SNV uc009vao.1:c.T429C:p.G143G exonic ENSMUSG00000000606 synonymous SNV ENSMUST00000022438:c.T429C:p.G143G 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52032935 AGGxCTT T C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 130 4 0 9.931453 0.266667 0.02 -0.157855 11 4 311 118 60 37 0 0 TT 30.046655 100 0 2713 0 KEEP + Vmn2r88 NO Spont_3 chr14 52078475 52078475 G A intronic Vmn2r89 NA NA UTR5 Vmn2r121 NA NA intronic "ENSMUSG00000068399,ENSMUSG00000070448" NA NA 14qC1 "Score=0.917456;Name=No.56670,chrUn_random:2738547" NA chr14 52078475 GAGxTTT G A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 528 72 23 8.484981 0.102041 0.02 1.248055 44 5 1249 131 60 37 0 0 GG 116.091924 386 0 10631 0 KEEP + Vmn2r89 NO Spont_3 chr14 59940469 59940469 A G intronic Phf11b NA NA intronic Gm4902 NA NA intronic ENSMUSG00000091649 NA NA 14qC3 "Score=0.958242;Name=No.53405,chr14:59881065" NA chr14 59940469 GAAxGAA A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 83 1 4 37.835344 0.590909 0.02 -0.192954 9 13 271 381 60 60 0 0 AA 16.24306 54 0 1514 0 KEEP - Phf11b NO Spont_3 chr14 66381708 66381708 C A UTR3 Scara5 NA NA UTR3 Scara5 NA NA UTR3 ENSMUSG00000022032 NA NA 14qD1 NA NA chr14 66381708 CAGxCCA C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 120 1 0 12.337836 0.09589 0.02 1.055062 66 7 1927 190 60 60 0 0 CC 11.298353 38 0 987 0 KEEP + Scara5 NO Spont_3 chr15 101101224 101101224 G C exonic Nr4a1 nonsynonymous SNV NM_010444:c.G709C:p.A237P exonic Nr4a1 nonsynonymous SNV uc007xsv.2:c.G709C:p.A237P exonic ENSMUSG00000023034 nonsynonymous SNV ENSMUST00000023779:c.G709C:p.A237P 15qF2 NA NA chr15 101101224 TTGxCAC G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 357 1 0 234.92151 0.517857 0.02 4.188466 81 87 2251 2439 60 60 0 0 GG 47.121016 157 0 4173 0 KEEP + Nr4a1 YES Spont_3 chr15 75587976 75587976 A G exonic Zc3h3 nonsynonymous SNV NM_172121:c.T2471C:p.V824A exonic Zc3h3 nonsynonymous SNV uc007whf.1:c.T2471C:p.V824A exonic ENSMUSG00000075600 nonsynonymous SNV ENSMUST00000100538:c.T2471C:p.V824A 15qD3 NA NA chr15 75587976 AGTxCGT A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.957638 0.963774 0.993634 70 0 0 7.825733 0.078431 0.02 1.445049 47 4 1266 120 60 60 0 0 AA 3.608054 12 0 315 0 KEEP - Zc3h3 NO Spont_3 chr15 76136660 76136660 C G exonic Oplah nonsynonymous SNV NM_153122:c.G332C:p.G111A exonic Oplah nonsynonymous SNV uc007wjo.1:c.G332C:p.G111A exonic ENSMUSG00000022562 nonsynonymous SNV ENSMUST00000023222:c.G332C:p.G111A 15qD3 NA NA chr15 76136660 GTGxCAA C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 226 5 0 195.28484 0.507143 0.02 2.557878 69 71 1960 2036 60 60 0 0 CC 15.303552 51 0 1384 0 KEEP - Oplah YES Spont_3 chr16 38194009 38194009 G C exonic Gsk3b nonsynonymous SNV NM_019827:c.G742C:p.A248P exonic Gsk3b nonsynonymous SNV uc007zeo.1:c.G442C:p.A148P exonic ENSMUSG00000022812 nonsynonymous SNV ENSMUST00000023507:c.G742C:p.A248P 16qB3 NA NA chr16 38194009 TTGxCTG G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668463 0.668523 0.999909 66 1 0 38.171287 0.482759 0.02 -0.253902 15 14 429 402 60 60 0 0 GG 6.883642 23 0 620 0 KEEP + Gsk3b YES Spont_3 chr16 79002098 79002098 A G exonic Tmprss15 nonsynonymous SNV NM_178855:c.T1895C:p.V632A exonic Tmprss15 nonsynonymous SNV uc007zsx.1:c.T1007C:p.V336A exonic ENSMUSG00000022857 nonsynonymous SNV ENSMUST00000060402:c.T1895C:p.V632A 16qC3.1 NA NA chr16 79002098 TTCxCAG A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999999 60 0 0 8.763551 0.210526 0.02 -0.16661 15 4 421 111 60 60 0 0 AA 10.525039 35 0 935 0 KEEP - Tmprss15 NO Spont_3 chr16 92321361 92321361 C T exonic 4930563D23Rik nonsynonymous SNV NM_029252:c.G283A:p.D95N exonic 4930563D23Rik nonsynonymous SNV uc007zyz.1:c.G283A:p.D95N exonic ENSMUSG00000051728 nonsynonymous SNV ENSMUST00000062638:c.G283A:p.D95N 16qC4 NA NA chr16 92321361 GGTxATT C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 184 1 0 112.579059 0.53012 0.02 0.968195 39 44 1165 1166 60 60 0 0 CC 25.565101 85 0 2429 0 KEEP - 4930563D23Rik NO Spont_3 chr17 26021554 26021554 C T exonic Rab40c nonsynonymous SNV NM_139154:c.G536A:p.G179D exonic Rab40c nonsynonymous SNV uc008bco.2:c.G536A:p.G179D exonic ENSMUSG00000025730 nonsynonymous SNV ENSMUST00000164982:c.G479A:p.G160D 17qA3.3 NA NA chr17 26021554 ATGxCAT C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.639957 0.641347 0.997832 50 1 0 24.644236 0.357143 0.02 -0.245558 18 10 533 278 60 60 0 0 CC 4.811431 16 0 434 0 KEEP - Rab40c NO Spont_3 chr17 33961243 33961243 C G splicing Rps28(NM_016844:exon3:c.87+1G>C) NA NA splicing "Rps28(uc008bzt.2:exon3:c.87+1G>C,uc008bzs.2:exon3:c.87+1G>C)" NA NA splicing "ENSMUSG00000067288(ENSMUST00000173019:exon3:c.87+1G>C,ENSMUST00000087342:exon3:c.87+1G>C,ENSMUST00000173879:exon2:c.48+1G>C,ENSMUST00000173844:exon3:c.87+1G>C,ENSMUST00000166693:exon3:c.87+1G>C)" NA NA 17qB1 NA NA chr17 33961243 TCAxCTG C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899205 0.899314 0.999879 73 0 0 43.912496 0.380952 0.02 -0.368363 26 16 760 484 60 60 0 0 CC 6.616068 22 0 597 0 KEEP - Rps28 YES Spont_3 chr17 4044803 4044803 T A ncRNA_exonic 4930470H14Rik NA NA intergenic "Nox3(dist=348542),AK019751(dist=74643)" NA NA intergenic "ENSMUSG00000023802(dist=348542),ENSMUSG00000075813(dist=633217)" NA NA 17qA1 NA NA chr17 4044803 CTGxAGC T A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 111 0 0 25.462267 0.4 0.02 -0.219169 15 10 398 280 60 60 0 0 TT 19.546225 65 0 1740 0 KEEP NA 4930470H14Rik NO Spont_3 chr17 5040589 5040589 A T exonic Arid1b nonsynonymous SNV NM_001085355:c.A1408T:p.M470L exonic Arid1b nonsynonymous SNV uc008aez.1:c.A1T:p.M1L exonic ENSMUSG00000069729 nonsynonymous SNV ENSMUST00000092723:c.A1564T:p.M522L 17qA1 NA NA chr17 5040589 CCGxTGG A T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941656 0.941741 0.999909 76 0 0 54.027344 0.466667 0.02 -0.411728 24 21 678 575 60 60 0 1 AA 7.218341 24 0 660 0 KEEP + Arid1b NO Spont_3 chr17 57360589 57360589 C A exonic C3 nonsynonymous SNV NM_009778:c.G2052T:p.Q684H exonic C3 nonsynonymous SNV uc008deg.1:c.G2052T:p.Q684H exonic ENSMUSG00000024164 nonsynonymous SNV ENSMUST00000024988:c.G2052T:p.Q684H 17qD NA NA chr17 57360589 GTAxTGA C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 153 8 0 11.446507 0.101695 0.02 1.168995 53 6 1577 170 60 60 0 0 CC 20.753408 69 0 1927 0 KEEP - C3 NO Spont_3 chr18 39646401 39646401 A G exonic Nr3c1 synonymous SNV NM_008173:c.T486C:p.P162P exonic Nr3c1 synonymous SNV uc008esx.1:c.T486C:p.P162P exonic ENSMUSG00000024431 synonymous SNV ENSMUST00000097592:c.T486C:p.P162P 18qB3 NA NA chr18 39646401 TGCxGGT A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 78 0 0 8.038826 0.16 0.02 -0.219231 21 4 606 109 60 60 0 0 AA 11.429523 38 0 1051 0 KEEP - Nr3c1 NO Spont_3 chr19 10299926 10299926 C G intronic Myrf NA NA intronic Gm98 NA NA intronic ENSMUSG00000036098 NA NA 19qA NA NA chr19 10299926 TGCxCGC C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98954 0.989542 0.999997 115 4 0 57.133674 0.423729 0.02 1.258994 34 25 1004 627 60 60 0 0 CC 9.324018 31 0 859 0 KEEP - Myrf YES Spont_3 chr19 10787156 10787156 C T exonic Vps37c nonsynonymous SNV NM_181403:c.C491T:p.P164L exonic Vps37c nonsynonymous SNV uc008gqr.1:c.C167T:p.P56L exonic ENSMUSG00000048832 nonsynonymous SNV ENSMUST00000087951:c.C491T:p.P164L 19qA NA NA chr19 10787156 TGCxGGA C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934428 0.934492 0.999931 77 0 0 67.234468 0.521739 0.02 -0.4031 22 24 580 696 60 60 0 0 CC 7.212124 24 0 603 0 KEEP + Vps37c NO Spont_3 chr19 11015120 11015120 C G exonic Gpr44 nonsynonymous SNV NM_009962:c.C510G:p.D170E exonic Gpr44 nonsynonymous SNV uc008gri.1:c.C510G:p.D170E exonic ENSMUSG00000034117 nonsynonymous SNV ENSMUST00000037261:c.C510G:p.D170E 19qA NA NA chr19 11015120 AGAxACC C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 138 0 0 97.466296 0.454545 0.02 1.28109 42 35 1190 1038 60 60 0 0 CC 14.435401 48 0 1316 0 KEEP + Gpr44 YES Spont_3 chr19 39814018 39814018 A G exonic Cyp2c68 nonsynonymous SNV NM_001039555:c.T179C:p.I60T exonic Cyp2c68 nonsynonymous SNV uc008hkd.2:c.T179C:p.I60T exonic ENSMUSG00000074882 nonsynonymous SNV ENSMUST00000099472:c.T179C:p.I60T 19qC3 "Score=0.934253;Name=No.72686,chr19:39839841" NA chr19 39814018 TATxTTT A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 67 0 0 7.082548 0.230769 0.02 -0.113989 10 3 271 87 60 46 0 0 AA 10.957914 46 1 1238 27 KEEP - Cyp2c68 NO Spont_3 chr19 48561977 48561977 A C exonic Sorcs3 nonsynonymous SNV NM_025696:c.A784C:p.K262Q exonic Sorcs3 nonsynonymous SNV uc008hvx.1:c.A784C:p.K262Q exonic ENSMUSG00000063434 nonsynonymous SNV ENSMUST00000078880:c.A784C:p.K262Q 19qD1 NA NA chr19 48561977 AGGxAGG A C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 82 0 0 20.177753 0.4375 0.02 -0.140329 9 7 259 216 60 60 0 0 AA 17.745984 59 0 1642 0 KEEP + Sorcs3 NO Spont_3 chr19 4988876 4988876 C G exonic Npas4 nonsynonymous SNV NM_153553:c.G187C:p.A63P exonic Npas4 nonsynonymous SNV uc008gbu.2:c.G187C:p.A63P exonic ENSMUSG00000045903 nonsynonymous SNV ENSMUST00000056129:c.G187C:p.A63P 19qA NA NA chr19 4988876 CAGxCAA C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 99 2 0 40.206519 0.405405 0.02 -0.342046 22 15 649 439 60 60 0 0 CC 13.634533 50 1 1360 12 KEEP - Npas4 YES Spont_3 chr19 58895497 58895497 G C exonic Hspa12a nonsynonymous SNV NM_175199:c.C656G:p.A219G exonic Hspa12a nonsynonymous SNV uc008iaw.1:c.C656G:p.A219G exonic ENSMUSG00000025092 nonsynonymous SNV ENSMUST00000066285:c.C656G:p.A219G 19qD2 NA NA chr19 58895497 TAGxCAG G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 232 1 0 30.428523 0.232143 0.02 1.112492 43 13 1221 374 70 70 0 0 GG 39.877055 133 0 3484 0 KEEP - Hspa12a YES Spont_3 chr1 84909244 84909244 C G exonic Slc16a14 nonsynonymous SNV NM_027921:c.G914C:p.G305A exonic Slc16a14 nonsynonymous SNV uc007btd.1:c.G914C:p.G305A exonic ENSMUSG00000026220 nonsynonymous SNV ENSMUST00000027422:c.G914C:p.G305A 1qC5 NA NA chr1 84909244 TAGxCTG C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835715 0.835716 0.999999 85 0 0 40.236955 0.416667 0.02 -0.324479 21 15 606 437 60 60 0 0 CC 10.807146 36 0 973 0 KEEP - Slc16a14 YES Spont_3 chr1 89493465 89493465 A T exonic Neu2 nonsynonymous SNV NM_001160164:c.A554T:p.H185L exonic Neu2 nonsynonymous SNV uc007bxb.2:c.A554T:p.H185L exonic ENSMUSG00000079434 nonsynonymous SNV ENSMUST00000165109:c.A554T:p.H185L 1qD NA NA chr1 89493465 TGCxCCC A T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 147 0 0 87.875502 0.453333 0.02 1.136518 41 34 1085 941 60 60 0 0 AA 16.238325 54 0 1440 0 KEEP + Neu2 NO Spont_3 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 310 0 0 10.754832 0.05042 0.02 2.653799 113 6 3022 182 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO Spont_3 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 320 4 0 11.092454 0.0625 0.02 2.793815 105 7 3139 189 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 NO Spont_3 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 150 0 0 18.580991 0.176471 0.02 1.436327 42 9 1138 246 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 YES Spont_3 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 209 2 0 11.474971 0.06422 0.02 2.425764 102 7 3025 194 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO Spont_3 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 262 0 0 11.430145 0.081081 0.02 1.059251 68 6 1862 176 60 60 1 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO Spont_3 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 357 4 0 20.090017 0.078431 0.02 3.406354 141 12 4199 326 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a NO Spont_3 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 218 2 0 11.120436 0.072289 0.02 0.951977 77 6 2278 176 70 60 0 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a NO Spont_3 chr1 90147949 90147949 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3319T:p.R1107W exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3328T:p.R1110W exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3319T:p.R1107W 1qD NA NA chr1 90147949 ATGxGGG C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 201 2 0 11.206579 0.083333 0.02 0.996173 66 6 1696 173 70 60 0 0 CC 28.221001 94 0 2168 0 KEEP + Mroh2a NO Spont_3 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 206 0 0 17.612964 0.090909 0.02 2.899315 90 9 2480 264 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO Spont_3 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717314 0.717315 0.999998 78 0 0 10.440997 0.16129 0.02 -0.27187 26 5 769 140 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a NO Spont_3 chr1 90155329 90155329 C G intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90155329 TGAxCCT C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 170 1 0 9.475681 0.089286 0.02 0.870831 51 5 1518 144 60 60 0 0 CC 19.853035 66 0 1857 0 KEEP + Mroh2a YES Spont_3 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 158 2 0 10.690062 0.076923 0.02 1.10966 72 6 1981 170 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO Spont_3 chr1 90161760 90161760 G A exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.C1772T:p.P591L exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc011wow.1:c.C1376T:p.P459L exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000100097:c.C473T:p.P158L 1qD NA NA chr1 90161760 CAGxGCC G A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 130 2 0 11.51926 0.086957 0.02 1.260764 63 6 1833 175 60 60 0 0 GG 11.731581 39 0 1104 0 KEEP - A730008H23Rik NO Spont_3 chr2 156853160 156853160 T C exonic 9830001H06Rik nonsynonymous SNV NM_001164663:c.A3290G:p.E1097G exonic 9830001H06Rik nonsynonymous SNV uc008nol.2:c.A3290G:p.E1097G exonic ENSMUSG00000055485 nonsynonymous SNV ENSMUST00000069098:c.A3290G:p.E1097G 2qH1 NA NA chr2 156853160 TGCxCCA T C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996721 0.996724 0.999997 108 0 0 123.188526 0.617647 0.02 1.278355 26 42 736 1228 60 60 0 0 TT 8.722917 29 0 809 0 KEEP - 9830001H06Rik NO Spont_3 chr2 162829011 162829011 T G exonic Sgk2 nonsynonymous SNV NM_013731:c.T601G:p.L201V exonic Sgk2 nonsynonymous SNV uc008nsh.1:c.T598G:p.L200V exonic ENSMUSG00000017868 nonsynonymous SNV ENSMUST00000109433:c.T514G:p.L172V 2qH2 NA NA chr2 162829011 TACxTGG T G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 103 0 0 44.117999 0.413043 0.02 -0.411868 27 19 759 486 60 60 0 0 TT 11.430858 38 0 1074 0 KEEP + Sgk2 NO Spont_3 chr2 164422997 164422997 G A exonic Wfdc8 nonsynonymous SNV NM_001276432:c.C964T:p.R322C exonic Wfdc8 nonsynonymous SNV uc008nvj.1:c.C964T:p.R322C exonic ENSMUSG00000070533 nonsynonymous SNV ENSMUST00000109339:c.C964T:p.R322C 2qH3 NA NA chr2 164422997 GGCxTGG G A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 166 2 0 11.942852 0.076923 0.02 0.88886 84 7 2169 193 60 60 0 0 GG 15.012115 50 0 1264 0 KEEP - Wfdc8 NO Spont_3 chr2 25357476 25357476 A G UTR5 Fbxw5 NA NA exonic Fbxw5 nonsynonymous SNV uc008isk.1:c.A163G:p.T55A exonic ENSMUSG00000015095 nonsynonymous SNV ENSMUST00000100316:c.A163G:p.T55A 2qA3 NA NA chr2 25357476 GTCxCGA A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 157 1 0 77.760615 0.515625 0.02 1.215044 31 33 887 813 60 60 0 0 AA 22.244479 74 0 1982 0 KEEP + Fbxw5 NO Spont_3 chr2 4967109 4967109 C G exonic Optn nonsynonymous SNV NM_181848:c.G506C:p.G169A exonic Optn nonsynonymous SNV uc008ifm.1:c.G506C:p.G169A exonic ENSMUSG00000026672 nonsynonymous SNV ENSMUST00000027986:c.G506C:p.G169A 2qA1 NA NA chr2 4967109 ATGxCCA C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 80 0 0 33.591749 0.393939 0.02 -0.289349 20 13 569 370 60 60 0 0 CC 11.429582 38 0 1053 0 KEEP - Optn YES Spont_3 chr2 70372376 70372376 T C exonic Erich2 synonymous SNV NM_025744:c.T1036C:p.L346L exonic 4933404M02Rik synonymous SNV uc008jzh.1:c.T1036C:p.L346L exonic ENSMUSG00000075302 synonymous SNV ENSMUST00000134607:c.T958C:p.L320L 2qC2 NA NA chr2 70372376 AACxTGT T C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 52 0 0 19.115692 0.388889 0.02 -0.157871 11 7 323 210 60 60 0 0 TT 8.723432 29 0 817 0 KEEP + Erich2 NO Spont_3 chr3 63544590 63544590 C G exonic Plch1 nonsynonymous SNV NM_001177732:c.G1281C:p.R427S exonic Plch1 nonsynonymous SNV uc012cqc.1:c.G771C:p.R257S exonic ENSMUSG00000036834 nonsynonymous SNV ENSMUST00000048134:c.G1218C:p.R406S 3qE1 NA NA chr3 63544590 CTGxCTG C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999998 63 0 0 16.365058 0.461538 0.02 -0.114009 7 6 203 174 60 60 0 0 CC 10.226645 34 0 945 0 KEEP - Plch1 YES Spont_3 chr3 64210918 64210918 A T exonic Vmn2r4 nonsynonymous SNV NM_001104615:c.T296A:p.F99Y exonic Vmn2r4 nonsynonymous SNV uc009vcl.1:c.T296A:p.F99Y exonic ENSMUSG00000092049 nonsynonymous SNV ENSMUST00000170280:c.T296A:p.F99Y 3qE1 "Score=0.951111;Name=No.81594,chr3:64518136" NA chr3 64210918 CTAxAAA A T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 286 0 0 56.749004 0.431373 0.02 1.230447 29 22 832 614 60 60 0 0 AA 59.256111 197 0 5495 0 KEEP - Vmn2r4 NO Spont_3 chr3 83705288 83705288 C A exonic D930015E06Rik nonsynonymous SNV NM_172681:c.G4269T:p.E1423D exonic D930015E06Rik nonsynonymous SNV uc008ppo.1:c.G3309T:p.E1103D exonic ENSMUSG00000033767 nonsynonymous SNV ENSMUST00000047595:c.G4086T:p.E1362D 3qF1 NA NA chr3 83705288 GGGxTCC C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999997 78 2 0 30.157981 0.4 0.02 -0.262972 18 12 516 332 60 60 0 0 CC 9.624326 32 0 880 0 KEEP - D930015E06Rik NO Spont_3 chr3 87972547 87972547 T G intronic Mef2d NA NA UTR3 Mef2d NA NA UTR3 ENSMUSG00000001419 NA NA 3qF1 NA NA chr3 87972547 TTCxTCA T G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 163 2 0 54.863214 0.442308 0.02 1.329275 29 23 800 594 60 60 0 0 TT 24.036042 80 0 2223 0 KEEP + Mef2d NO Spont_3 chr3 88904682 88904682 A T exonic Fdps nonsynonymous SNV NM_134469:c.T50A:p.F17Y exonic Fdps nonsynonymous SNV uc008pxo.1:c.T50A:p.F17Y exonic ENSMUSG00000059743 nonsynonymous SNV ENSMUST00000081848:c.T50A:p.F17Y 3qF1 NA NA chr3 88904682 ATGxAAT A T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 151 0 5 60.858846 0.628571 0.02 -0.306914 13 22 375 604 60 60 0 0 AA 28.874996 96 0 2671 0 KEEP - Fdps NO Spont_3 chr4 125775466 125775466 G C UTR3 Lsm10 NA NA UTR3 Lsm10 NA NA UTR3 ENSMUSG00000050188 NA NA 4qD2.2 NA NA chr4 125775466 TGAxACT G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 192 0 0 8.913172 0.05814 0.02 1.236848 81 5 2414 148 60 60 0 0 GG 21.960003 73 0 2084 0 KEEP + Lsm10 YES Spont_3 chr4 126427604 126427604 C A exonic Ncdn nonsynonymous SNV NM_011986:c.G668T:p.R223L exonic Ncdn nonsynonymous SNV uc008utt.2:c.G668T:p.R223L exonic ENSMUSG00000028833 nonsynonymous SNV ENSMUST00000030637:c.G668T:p.R223L 4qD2.2 NA NA chr4 126427604 CCTxGCA C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999998 102 1 0 52.768379 0.37931 0.02 1.285295 36 22 948 590 60 60 0 0 CC 9.848754 33 0 803 0 KEEP - Ncdn NO Spont_3 chr4 133958890 133958890 A G UTR5 Pafah2 NA NA exonic Pafah2 synonymous SNV uc012dmv.1:c.A36G:p.A12A exonic ENSMUSG00000037366 synonymous SNV ENSMUST00000105870:c.A36G:p.A12A 4qD3 NA NA chr4 133958890 AGCxAAT A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 179 0 0 72.582989 0.3875 0.02 1.190789 49 31 1388 810 60 60 0 0 AA 22.186115 74 0 1970 0 KEEP + Pafah2 NO Spont_3 chr4 136574370 136574370 T G exonic Zbtb40 nonsynonymous SNV NM_198248:c.A266C:p.N89T exonic Zbtb40 nonsynonymous SNV uc008vit.1:c.A266C:p.N89T exonic ENSMUSG00000060862 nonsynonymous SNV ENSMUST00000049583:c.A266C:p.N89T 4qD3 NA NA chr4 136574370 AAGxTGT T G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 178 1 0 89.869728 0.478261 0.02 1.377805 36 33 980 949 60 60 0 0 TT 25.562513 85 0 2302 0 KEEP - Zbtb40 NO Spont_3 chr4 140314043 140314043 C G exonic Padi4 nonsynonymous SNV NM_011061:c.G725C:p.G242A exonic Padi4 nonsynonymous SNV uc008vne.2:c.G725C:p.G242A exonic ENSMUSG00000025330 nonsynonymous SNV ENSMUST00000026381:c.G725C:p.G242A 4qD3 NA NA chr4 140314043 CCGxCGG C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 226 4 0 74.937908 0.30303 0.02 2.99901 69 30 1987 870 60 60 0 0 CC 26.435395 88 0 2388 0 KEEP - Padi4 YES Spont_3 chr4 145489259 145489259 G C intergenic "Gm13238(dist=61364),1700095A21Rik(dist=161907)" NA NA exonic Gm13051 nonsynonymous SNV uc008vsa.1:c.G585C:p.Q195H exonic ENSMUSG00000078500 nonsynonymous SNV ENSMUST00000123460:c.G585C:p.Q195H 4qE1 "Score=0.986863;Name=No.86634,chr4:146677141" NA chr4 145489259 CCAxAGA G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999997 86 1 35 7.632566 0.272727 0.02 -0.096472 8 3 232 90 55 36 0 0 GG 17.147532 57 0 1638 0 KEEP + Gm13238 YES Spont_3 chr4 33261684 33261684 G C intronic Pm20d2 NA NA intronic Pm20d2 NA NA intronic ENSMUSG00000054659 NA NA 4qA5 NA NA chr4 33261684 CTGxCAG G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 100 2 0 21.85688 0.321429 0.02 -0.254324 19 9 571 252 60 60 0 0 GG 16.841341 56 0 1554 0 KEEP - Pm20d2 YES Spont_3 chr4 43006583 43006583 C A exonic Vcp synonymous SNV NM_009503:c.G420T:p.L140L exonic Vcp synonymous SNV uc008sor.2:c.G420T:p.L140L exonic ENSMUSG00000028452 synonymous SNV ENSMUST00000030164:c.G420T:p.L140L 4qA5 NA NA chr4 43006583 TTCxAGG C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 162 0 1 53.516123 0.47619 0.02 -0.368295 22 20 645 566 60 60 0 0 CC 27.975725 93 0 2651 0 KEEP - Vcp NO Spont_3 chr4 57020735 57020735 A C intergenic "Frrs1l(dist=17472),Epb4.1l4b(dist=53863)" NA NA intergenic "6430704M03Rik(dist=17472),Epb4.1l4b(dist=53863)" NA NA intronic ENSMUSG00000028434 NA NA 4qB3 NA NA chr4 57020735 GGAxGCA A C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 45 0 0 31.928495 0.6875 0.02 -0.140309 5 11 142 310 60 60 0 0 AA 6.916649 23 0 625 0 KEEP NA Frrs1l NO Spont_3 chr4 58386164 58386164 A C exonic Musk nonsynonymous SNV NM_001037130:c.A2162C:p.N721T exonic Musk nonsynonymous SNV uc008syz.1:c.A2159C:p.N720T exonic ENSMUSG00000057280 nonsynonymous SNV ENSMUST00000102893:c.A2162C:p.N721T 4qB3 NA NA chr4 58386164 GGAxCTG A C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 167 0 0 8.84391 0.070423 0.02 1.269637 66 5 1844 143 60 60 0 0 AA 21.044583 70 0 1891 0 KEEP + Musk NO Spont_3 chr5 109647962 109647962 T A exonic Vmn2r14 nonsynonymous SNV NM_001104625:c.A1410T:p.Q470H exonic Vmn2r14 nonsynonymous SNV uc009vdl.1:c.A1410T:p.Q470H exonic ENSMUSG00000091059 nonsynonymous SNV ENSMUST00000170341:c.A1410T:p.Q470H 5qF NA NA chr5 109647962 GCCxTGT T A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 381 2 2 70.575989 0.394366 0.02 1.063851 43 28 1242 779 60 60 0 0 TT 78.469514 261 0 7250 0 KEEP - Vmn2r14 NO Spont_3 chr5 112675702 112675702 T A exonic Cryba4 nonsynonymous SNV NM_021351:c.A580T:p.I194F exonic Cryba4 nonsynonymous SNV uc008yst.1:c.A541T:p.I181F exonic ENSMUSG00000066975 nonsynonymous SNV ENSMUST00000112383:c.A541T:p.I181F 5qF NA NA chr5 112675702 GGAxTCT T A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.86564 0.865745 0.999879 73 0 0 7.461576 0.105263 0.02 -0.341957 34 4 958 111 60 60 0 0 TT 6.616803 22 0 603 0 KEEP - Cryba4 NO Spont_3 chr5 113268698 113268698 A G exonic Myo18b nonsynonymous SNV NM_028901:c.T3119C:p.F1040S exonic Myo18b nonsynonymous SNV uc008ytq.2:c.T1238C:p.F413S exonic ENSMUSG00000072720 nonsynonymous SNV ENSMUST00000086617:c.T3119C:p.F1040S 5qF NA NA chr5 113268698 TCAxAGG A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 135 2 0 60.731311 0.383333 0.02 1.366871 37 23 1006 671 60 60 0 0 AA 14.738572 49 0 1365 0 KEEP - Myo18b NO Spont_3 chr5 113268702 113268702 G C exonic Myo18b nonsynonymous SNV NM_028901:c.C3115G:p.P1039A exonic Myo18b nonsynonymous SNV uc008ytq.2:c.C1234G:p.P412A exonic ENSMUSG00000072720 nonsynonymous SNV ENSMUST00000086617:c.C3115G:p.P1039A 5qF NA NA chr5 113268702 AGGxCAC G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 137 2 0 64.61191 0.4 0.02 1.365995 36 24 1036 707 60 60 0 0 GG 14.738104 49 0 1358 0 KEEP - Myo18b YES Spont_3 chr5 114153943 114153943 C A ncRNA_intronic 1700069L16Rik NA NA ncRNA_intronic 1700069L16Rik NA NA exonic ENSMUSG00000042184 nonsynonymous SNV ENSMUST00000047891:c.G123T:p.R41S 5qF NA NA chr5 114153943 GGTxCTC C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 73 0 0 33.084523 0.433333 0.02 -0.263084 17 13 501 358 60 60 0 0 CC 11.430937 38 0 1076 0 KEEP - 1700069L16Rik NO Spont_3 chr5 124404539 124404539 G C exonic Ccdc62 nonsynonymous SNV NM_001134767:c.G1577C:p.G526A exonic Ccdc62 nonsynonymous SNV uc012edk.1:c.G1577C:p.G526A exonic ENSMUSG00000061882 nonsynonymous SNV ENSMUST00000094320:c.G1577C:p.G526A 5qF NA NA chr5 124404539 ATGxCCA G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 209 1 0 111.896974 0.445652 0.02 1.085356 51 41 1489 1198 60 60 0 0 GG 25.195187 84 0 2263 0 KEEP + Ccdc62 YES Spont_3 chr5 124456592 124456592 G C exonic Vps37b synonymous SNV NM_177876:c.C522G:p.A174A exonic Vps37b synonymous SNV uc008zot.1:c.C522G:p.A174A exonic ENSMUSG00000066278 synonymous SNV ENSMUST00000040967:c.C522G:p.A174A 5qF NA NA chr5 124456592 CGGxGCC G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984159 0.984161 0.999997 101 2 0 73.97207 0.526316 0.02 1.285144 27 30 784 768 60 60 0 0 GG 9.022471 30 0 822 0 KEEP - Vps37b YES Spont_3 chr5 149700524 149700524 A C exonic Katnal1 nonsynonymous SNV NM_153572:c.T1072G:p.F358V exonic Katnal1 nonsynonymous SNV uc009aow.2:c.T1072G:p.F358V exonic ENSMUSG00000041298 nonsynonymous SNV ENSMUST00000047257:c.T1072G:p.F358V 5qG3 NA NA chr5 149700524 GAAxGTT A C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800244 0.800245 0.999998 77 0 0 53.828178 0.588235 0.02 -0.306871 14 20 392 543 60 60 0 0 AA 9.891023 33 0 892 0 KEEP - Katnal1 NO Spont_3 chr5 30673172 30673172 C G exonic Otof nonsynonymous SNV NM_031875:c.G5714C:p.G1905A exonic Otof nonsynonymous SNV uc008wvk.1:c.G5714C:p.G1905A exonic ENSMUSG00000062372 nonsynonymous SNV ENSMUST00000074171:c.G5714C:p.G1905A 5qB1 NA NA chr5 30673172 TTGxCCT C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 142 0 0 84.116139 0.430556 0.02 1.251971 41 31 1194 907 60 60 0 0 CC 16.81871 56 0 1526 0 KEEP - Otof YES Spont_3 chr5 34959440 34959440 A C exonic Add1 nonsynonymous SNV NM_001024458:c.A1390C:p.S464R exonic Add1 nonsynonymous SNV uc008xcp.1:c.A1390C:p.S464R exonic ENSMUSG00000029106 nonsynonymous SNV ENSMUST00000135321:c.A343C:p.S115R 5qB2 NA NA chr5 34959440 GGAxGCA A C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 128 0 0 68.731858 0.460317 0.02 1.223748 34 29 978 738 60 60 0 0 AA 14.137204 47 0 1313 0 KEEP + Add1 NO Spont_3 chr5 42186308 42186308 C A splicing Bod1l(NM_001081422:exon24:c.8604+1G>T) NA NA splicing "Bod1l(uc008xhd.2:exon15:c.6360+1G>T,uc008xhe.2:exon24:c.8604+1G>T)" NA NA splicing "ENSMUSG00000061755(ENSMUST00000166922:exon15:c.3894+1G>T,ENSMUST00000050556:exon24:c.8604+1G>T)" NA NA 5qB3 NA NA chr5 42186308 TTAxATT C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 68 0 0 11.099807 0.5 0.02 -0.070156 4 4 114 116 60 60 0 0 CC 15.640144 52 0 1439 0 KEEP - Bod1l NO Spont_3 chr5 92883824 92883824 C G exonic Scarb2 nonsynonymous SNV NM_007644:c.G758C:p.G253A exonic Scarb2 nonsynonymous SNV uc008ydm.1:c.G758C:p.G253A exonic ENSMUSG00000029426 nonsynonymous SNV ENSMUST00000031377:c.G758C:p.G253A 5qE2 NA NA chr5 92883824 TCTxCGT C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139181 0.139832 0.995343 28 0 0 24.197779 0.666667 0.02 -0.105244 4 8 117 237 60 60 0 0 CC 4.211617 14 0 401 0 KEEP - Scarb2 YES Spont_3 chr6 115440136 115440136 C A exonic Pparg nonsynonymous SNV NM_011146:c.C1441A:p.L481M exonic Pparg nonsynonymous SNV uc009dit.2:c.C1441A:p.L481M exonic ENSMUSG00000000440 nonsynonymous SNV ENSMUST00000000450:c.C1441A:p.L481M 6qE3 NA NA chr6 115440136 CTAxTGC C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 139 0 0 77.339637 0.630435 0.02 -0.403159 17 29 490 767 60 60 0 0 CC 22.84411 76 0 2105 0 KEEP + Pparg NO Spont_3 chr6 118647732 118647732 C G exonic Cacna1c nonsynonymous SNV NM_001159533:c.G1588C:p.V530L exonic Cacna1c nonsynonymous SNV uc009dls.2:c.G871C:p.V291L exonic ENSMUSG00000051331 nonsynonymous SNV ENSMUST00000075591:c.G1111C:p.V371L 6qF1 NA NA chr6 118647732 TCAxGAG C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 64 0 0 6.689758 0.2 0.02 -0.173434 16 4 350 91 60 60 0 0 CC 7.684664 30 1 657 10 KEEP - Cacna1c YES Spont_3 chr7 105163398 105163398 T G intronic Gdpd4 NA NA intronic Gdpd4 NA NA intronic ENSMUSG00000035582 NA NA 7qE2 NA NA chr7 105163398 TGTxTCC T G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 67 0 0 13.070258 0.3125 0.02 -0.149037 11 5 316 150 60 60 0 0 TT 11.429573 38 0 1054 0 KEEP + Gdpd4 NO Spont_3 chr7 118216251 118216251 C G exonic Eif4g2 nonsynonymous SNV NM_001040131:c.G2562C:p.W854C exonic Eif4g2 nonsynonymous SNV uc009jfz.1:c.G2562C:p.W854C exonic ENSMUSG00000005610 nonsynonymous SNV ENSMUST00000106666:c.G2562C:p.W854C 7qF1 NA NA chr7 118216251 TAGxCAG C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 88 0 0 24.886561 0.529412 0.02 -0.149095 8 9 242 257 60 60 0 0 CC 19.18743 64 0 1756 0 KEEP - Eif4g2 YES Spont_3 chr7 139262461 139262461 C G intronic Cpxm2 NA NA intronic Cpxm2 NA NA intronic "ENSMUSG00000030849,ENSMUSG00000030862" NA NA 7qF3 NA NA chr7 139262461 TCTxTTT C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099505 0.099721 0.997832 27 0 0 13.973585 0.5 0.02 -0.087699 5 5 150 146 60 60 0 0 CC 4.78894 16 0 421 0 KEEP - Cpxm2 YES Spont_3 chr7 147877336 147877336 C G exonic Olfr45 nonsynonymous SNV NM_146963:c.C531G:p.H177Q exonic Olfr45 nonsynonymous SNV uc009kia.1:c.C531G:p.H177Q exonic ENSMUSG00000066122 nonsynonymous SNV ENSMUST00000084454:c.C531G:p.H177Q 7qF5 NA NA chr7 147877336 CCAxTTC C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 371 4 0 8.367679 0.054348 0.02 1.086141 87 5 2498 144 60 60 0 0 CC 68.5288 228 0 6375 0 KEEP + Olfr45 YES Spont_3 chr7 25850448 25850448 G C exonic Grik5 nonsynonymous SNV NM_008168:c.C286G:p.P96A exonic Grik5 nonsynonymous SNV uc009frh.2:c.C286G:p.P96A exonic ENSMUSG00000003378 nonsynonymous SNV ENSMUST00000003468:c.C286G:p.P96A 7qA3 NA NA chr7 25850448 AGGxTCC G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 123 0 0 78.907542 0.675 0.02 -0.350661 13 27 362 770 60 60 0 0 GG 17.743258 59 0 1595 0 KEEP - Grik5 YES Spont_3 chr7 28442999 28442999 T A exonic Map3k10 nonsynonymous SNV NM_001081292:c.A2372T:p.K791M exonic Map3k10 nonsynonymous SNV uc009fwv.1:c.A2372T:p.K791M exonic ENSMUSG00000040390 nonsynonymous SNV ENSMUST00000036453:c.A2372T:p.K791M 7qA3 NA NA chr7 28442999 TTCxTGA T A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976862 0.976865 0.999997 91 0 0 96.356382 0.62963 0.02 1.212958 20 34 565 956 60 60 0 0 TT 9.023077 30 0 828 0 KEEP - Map3k10 NO Spont_3 chr7 28942040 28942040 G A exonic 9530053A07Rik nonsynonymous SNV NM_001164655:c.G6232A:p.D2078N exonic 9530053A07Rik nonsynonymous SNV uc009fxx.2:c.G6232A:p.D2078N exonic ENSMUSG00000078776 nonsynonymous SNV ENSMUST00000150948:c.G6232A:p.D2078N 7qA3 NA NA chr7 28942040 AAGxACT G A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999998 66 0 0 39.78933 0.608696 0.02 -0.201708 9 14 264 398 60 60 0 0 GG 10.225368 34 0 950 0 KEEP + 9530053A07Rik NO Spont_3 chr7 48446953 48446953 C T intergenic "Gm4884(dist=146281),Gm5592(dist=92744)" NA NA intergenic "Gm4884(dist=146281),Gm5592(dist=92744)" NA NA intergenic "ENSMUSG00000078737(dist=33287),ENSMUSG00000049062(dist=55438)" NA NA 7qB3 "Score=0.965278;Name=No.83501,chr3:54285345" NA chr7 48446953 CAGxTGA C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 154 2 1 11.153433 0.208333 0.02 -0.210486 19 5 561 141 60 20 0 0 CC 31.700049 115 1 3210 27 KEEP NA Gm4884 NO Spont_3 chr7 4945319 4945319 G C exonic Zfp579 synonymous SNV NM_026741:c.C1194G:p.R398R exonic Zfp579 synonymous SNV uc009ezc.1:c.C1194G:p.R398R exonic ENSMUSG00000051550 synonymous SNV ENSMUST00000162731:c.C1194G:p.R398R 7qA1 NA NA chr7 4945319 CTGxCGT G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 86 2 0 33.084707 0.351351 0.02 -0.324483 24 13 698 373 60 60 0 0 GG 11.426786 38 0 1044 0 KEEP - Zfp579 YES Spont_3 chr7 52770100 52770100 C T intronic Tulp2 NA NA intronic Tulp2 NA NA intronic ENSMUSG00000023467 NA NA 7qB4 NA NA chr7 52770100 CTTxCAT C T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 99 2 0 8.763033 0.153846 0.02 -0.228042 22 4 660 117 60 60 0 0 CC 17.396372 58 0 1606 0 KEEP + Tulp2 NO Spont_3 chr7 53541284 53541284 A G intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53541284 TTGxGCG A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 99 2 0 21.518129 0.2 0.02 -0.403388 36 9 1039 270 60 60 0 0 AA 12.03178 40 0 1120 0 KEEP + Otog NO Spont_3 chr7 53890748 53890748 A C intronic Sergef NA NA intronic Sergef NA NA intronic ENSMUSG00000030839 NA NA 7qB4 NA NA chr7 53890748 AATxTCT A C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 127 0 0 11.418551 0.166667 0.02 -0.263036 25 5 671 149 60 60 0 0 AA 25.55829 85 0 2243 0 KEEP - Sergef NO Spont_3 chr7 58821027 58821027 T A intronic Ano5 NA NA intronic Ano5 NA NA intronic ENSMUSG00000055489 NA NA 7qB5 NA NA chr7 58821027 GTGxCAG T A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077326 0.077336 0.999879 34 0 0 13.698742 0.555556 0.02 -0.078929 4 5 119 140 60 60 0 0 TT 6.590738 22 0 586 0 KEEP + Ano5 NO Spont_3 chr8 127387184 127387184 C G exonic Gnpat nonsynonymous SNV NM_010322:c.C47G:p.A16G exonic Gnpat nonsynonymous SNV uc009nxu.2:c.C47G:p.A16G exonic ENSMUSG00000031985 nonsynonymous SNV ENSMUST00000034466:c.C47G:p.A16G 8qE2 NA NA chr8 127387184 CGGxCAG C G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990874 0.990964 0.999909 109 1 0 82.730579 0.5 0.02 1.348965 31 31 867 866 60 60 0 0 CC 7.218357 24 0 662 0 KEEP + Gnpat YES Spont_3 chr8 13188524 13188524 G C intronic Grtp1 NA NA exonic Grtp1 nonsynonymous SNV uc012fzv.1:c.C520G:p.R174G exonic ENSMUSG00000038515 nonsynonymous SNV ENSMUST00000080568:c.C520G:p.R174G 8qA1.1 NA NA chr8 13188524 TTCxCAA G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 80 7 0 22.34751 0.444444 0.02 -0.166604 10 8 269 239 60 60 0 0 GG 13.507545 45 0 1159 0 KEEP - Grtp1 YES Spont_3 chr8 20020448 20020448 G T upstream "2610005L07Rik,6820431F20Rik" NA NA upstream Gm10348 NA NA upstream ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020448 CGCxCCC G T Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 338 9 24 11.946649 0.049296 0.02 2.513088 135 7 3749 207 60 60 0 0 GG 42.394179 141 0 3747 0 KEEP NA 2610005L07Rik NO Spont_3 chr9 106376137 106376137 T A exonic Parp3 nonsynonymous SNV NM_145619:c.A871T:p.T291S exonic Parp3 nonsynonymous SNV uc009rjw.1:c.A547T:p.T183S exonic ENSMUSG00000023249 nonsynonymous SNV ENSMUST00000067218:c.A871T:p.T291S 9qF1 NA NA chr9 106376137 AGGxCTG T A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 332 6 0 152.475012 0.387097 0.02 4.300411 95 60 2644 1688 60 60 0 0 TT 36.905218 123 0 3257 0 KEEP - Parp3 NO Spont_3 chr9 108012825 108012825 C A exonic Bsn nonsynonymous SNV NM_007567:c.G8058T:p.E2686D exonic Bsn nonsynonymous SNV uc009rov.1:c.G8058T:p.E2686D exonic ENSMUSG00000032589 nonsynonymous SNV ENSMUST00000035208:c.G8058T:p.E2686D 9qF2 NA NA chr9 108012825 GGGxTCG C A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 238 3 0 184.464566 0.51049 0.02 2.22721 70 73 2049 1928 60 60 0 0 CC 18.948263 63 0 1751 0 KEEP - Bsn NO Spont_3 chr9 44057974 44057974 A G exonic Pdzd3 nonsynonymous SNV NM_133226:c.T472C:p.C158R exonic Pdzd3 nonsynonymous SNV uc009pch.1:c.T472C:p.C158R exonic ENSMUSG00000032105 nonsynonymous SNV ENSMUST00000034618:c.T472C:p.C158R 9qA5.2 NA NA chr9 44057974 GGCxCAA A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.713292 0.717315 0.994391 46 0 0 34.818594 0.483871 0.02 -0.271746 16 15 455 370 60 60 0 0 AA 3.607133 12 0 310 0 KEEP - Pdzd3 NO Spont_3 chr9 45136848 45136848 A G exonic Tmprss13 nonsynonymous SNV NM_001013373:c.A370G:p.T124A exonic Tmprss13 nonsynonymous SNV uc009pfr.1:c.A370G:p.T124A exonic ENSMUSG00000037129 nonsynonymous SNV ENSMUST00000034597:c.A370G:p.T124A 9qA5.2 NA NA chr9 45136848 GCCxCCA A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 50 0 0 29.233824 0.52381 0.02 -0.184123 10 11 269 303 60 60 0 0 AA 8.41168 28 0 729 0 KEEP + Tmprss13 NO Spont_3 chr9 57596268 57596268 G C exonic Edc3 nonsynonymous SNV NM_153799:c.G1493C:p.G498A exonic Edc3 nonsynonymous SNV uc009pvq.1:c.G944C:p.G315A exonic ENSMUSG00000038957 nonsynonymous SNV ENSMUST00000043990:c.G1493C:p.G498A 9qB NA NA chr9 57596268 TTGxCTG G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229148 0.229173 0.999892 44 2 0 16.910201 0.428571 0.02 -0.131562 8 6 236 182 60 60 0 0 GG 6.917984 23 0 638 0 KEEP + Edc3 YES Spont_3 chrM 4901 4901 G A intergenic "NONE(dist=NONE),NONE(dist=NONE)" NA NA ncRNA_exonic AK163440 NA NA exonic ENSMUSG00000064345 unknown UNKNOWN NA NA NA chrM 4901 CTAxCTA G A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1983 34 2 51.421488 0.04065 0.02 21.279536 826 35 24243 981 60 60 0 0 GG 295.594275 991 1 27360 21 KEEP + NONE NO Spont_3 chrX 121241416 121241416 T G exonic Vmn2r121 nonsynonymous SNV NM_001100616:c.A2515C:p.K839Q exonic Vmn2r121 nonsynonymous SNV uc009vfh.1:c.A874C:p.K292Q exonic ENSMUSG00000072049 nonsynonymous SNV ENSMUST00000096792:c.A2395C:p.K799Q XqE3 "Score=0.907926;Name=No.56970,chr14:52025642" NA chrX 121241416 TCTxTAT T G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 229 11 14 14.045427 0.2 0.02 -0.403405 24 6 686 177 60 43 0 0 TT 46.051087 163 1 4535 28 KEEP - Vmn2r121 NO Spont_3 chrX 20938062 20938062 G A ncRNA_exonic Gm5124 NA NA UTR5 Gm5124 NA NA ncRNA_exonic "ENSMUSG00000051537,ENSMUSG00000091801" NA NA XqA2 NA NA chrX 20938062 GGGxAGT G A Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 140 0 0 97.344868 0.914286 0.02 -0.315248 3 32 91 866 60 60 0 0 GG 24.65826 82 0 2278 0 KEEP + Gm5124 NO Spont_3 chrX 38646604 38646604 A G intergenic "Cypt14(dist=1429823),Gria3(dist=107874)" NA NA intergenic "Cypt14(dist=1429823),Gria3(dist=107427)" NA NA downstream ENSMUSG00000081880 NA NA XqA3.3 "Score=0.937075;Name=No.105006,chr8:78235369" NA chrX 38646604 TCAxAAG A G Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 106 2 3 18.764339 0.318182 0.02 -0.263116 15 7 427 214 60 60 0 0 AA 15.305636 51 0 1400 0 KEEP NA Cypt14 NO Spont_3 chrX 68450519 68450519 G C intergenic "Mamld1(dist=42627),Mtm1(dist=13423)" NA NA intergenic "Mamld1(dist=42627),Mtm1(dist=13423)" NA NA ncRNA_exonic ENSMUSG00000082262 NA NA XqA7.2 "Score=0.975138;Name=No.89590,chr4:111479605" NA chrX 68450519 TCGxCCA G C Ot5148_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index31_CACGAT_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 139 1 0 65.656316 1 0.02 -0.166643 0 19 0 566 0 60 0 0 GG 32.402479 108 0 2961 0 KEEP NA Mamld1 YES Spont_4 chr10 110405543 110405543 C G exonic Zdhhc17 nonsynonymous SNV NM_172554:c.G550C:p.D184H exonic Zdhhc17 nonsynonymous SNV uc007gzu.2:c.G550C:p.D184H exonic ENSMUSG00000035798 nonsynonymous SNV ENSMUST00000041723:c.G550C:p.D184H 10qD1 NA NA chr10 110405543 TATxTAC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 95 0 0 6.717453 0.086957 0.02 -0.411935 42 4 1205 107 60 60 0 0 CC 11.129717 37 0 1058 0 KEEP - Zdhhc17 YES Spont_4 chr10 119423464 119423464 T C exonic Grip1 synonymous SNV NM_130891:c.T1038C:p.P346P exonic Grip1 synonymous SNV uc007heg.1:c.T1041C:p.P347P exonic ENSMUSG00000034813 synonymous SNV ENSMUST00000077871:c.T1041C:p.P347P 10qD2 NA NA chr10 119423464 ACCxCGA T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.69366 0.693668 0.999988 68 0 0 8.196028 0.133333 0.02 -0.263101 26 4 752 114 60 60 0 0 TT 8.095245 27 0 735 0 KEEP + Grip1 NO Spont_4 chr10 119475751 119475751 G C exonic Grip1 nonsynonymous SNV NM_130891:c.G2126C:p.G709A exonic Grip1 nonsynonymous SNV uc007heg.1:c.G2129C:p.G710A exonic ENSMUSG00000034813 nonsynonymous SNV ENSMUST00000130387:c.G1118C:p.G373A 10qD2 NA NA chr10 119475751 CTGxCAA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 144 2 0 96.618732 0.48 0.02 1.135862 39 36 1100 1020 60 60 0 0 GG 15.036105 50 0 1362 0 KEEP + Grip1 YES Spont_4 chr10 127181129 127181129 A T UTR3 Zbtb39 NA NA UTR3 Zbtb39 NA NA UTR3 ENSMUSG00000044617 NA NA 10qD3 NA NA chr10 127181129 GCCxGTC A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 210 0 0 62.906383 0.238938 0.02 2.694846 86 27 2408 770 60 60 0 0 AA 23.157332 77 0 2109 0 KEEP + Zbtb39 NO Spont_4 chr10 127833697 127833697 A T exonic Slc39a5 nonsynonymous SNV NM_028051:c.T1289A:p.L430Q exonic Slc39a5 nonsynonymous SNV uc007hmn.2:c.T1289A:p.L430Q exonic ENSMUSG00000039878 nonsynonymous SNV ENSMUST00000167859:c.T1289A:p.L430Q 10qD3 NA NA chr10 127833697 AGCxGCA A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.81835 0.818465 0.99986 58 0 0 9.990881 0.138889 0.02 -0.315708 31 5 890 139 60 60 0 0 AA 5.714926 19 0 528 0 KEEP - Slc39a5 NO Spont_4 chr10 127929655 127929655 C G intronic Myl6 NA NA intronic Myl6 NA NA intronic ENSMUSG00000090841 NA NA 10qD3 NA NA chr10 127929655 GCTxACC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 217 0 0 108.933364 0.44086 0.02 1.068901 52 41 1510 1171 60 60 0 0 CC 25.869737 86 0 2461 0 KEEP - Myl6 YES Spont_4 chr10 76059247 76059247 G C exonic Col6a2 nonsynonymous SNV NM_146007:c.C2816G:p.A939G exonic Col6a2 nonsynonymous SNV uc007fuu.2:c.C2816G:p.A939G exonic ENSMUSG00000020241 nonsynonymous SNV ENSMUST00000001181:c.C2816G:p.A939G 10qC1 NA NA chr10 76059247 ATGxCGT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 164 0 0 12.776402 0.068627 0.02 2.69261 95 7 2693 205 60 60 0 0 GG 13.534817 45 0 1242 0 KEEP - Col6a2 YES Spont_4 chr10 78212040 78212040 A T exonic Ccdc105 nonsynonymous SNV NM_027630:c.T706A:p.F236I exonic Ccdc105 nonsynonymous SNV uc007fyf.2:c.T706A:p.F236I exonic ENSMUSG00000078442 nonsynonymous SNV ENSMUST00000105383:c.T706A:p.F236I 10qC1 NA NA chr10 78212040 AGAxGTC A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229028 0.229173 0.999366 38 0 0 21.413347 0.533333 0.02 -0.131539 7 8 200 221 60 60 0 0 AA 5.113543 17 0 476 0 KEEP - Ccdc105 NO Spont_4 chr10 80049400 80049400 C G exonic Abhd17a synonymous SNV NM_145421:c.G192C:p.G64G exonic Fam108a synonymous SNV uc007gdv.2:c.G192C:p.G64G exonic ENSMUSG00000003346 synonymous SNV ENSMUST00000003436:c.G192C:p.G64G 10qC1 NA NA chr10 80049400 GCGxCCG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818376 0.818465 0.999892 59 0 0 17.33811 0.222222 0.02 -0.315693 28 8 805 218 60 60 0 0 CC 6.917537 23 0 633 0 KEEP - Abhd17a YES Spont_4 chr10 80712486 80712486 A T exonic Zfr2 synonymous SNV NM_001034895:c.A2289T:p.P763P exonic Zfr2 synonymous SNV uc007ggs.2:c.A2289T:p.P763P exonic ENSMUSG00000034949 synonymous SNV ENSMUST00000092282:c.A1392T:p.P464P 10qC1 NA NA chr10 80712486 CCCxGGG A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 269 0 0 114.008959 0.323944 0.02 2.3418 96 46 2742 1309 60 60 0 0 AA 27.064989 90 0 2456 0 KEEP + Zfr2 NO Spont_4 chr10 82717664 82717664 T G exonic Slc41a2 nonsynonymous SNV NM_177388:c.A1400C:p.K467T exonic Slc41a2 nonsynonymous SNV uc007gkf.1:c.A1400C:p.K467T exonic ENSMUSG00000034591 nonsynonymous SNV ENSMUST00000039956:c.A1400C:p.K467T 10qC1 NA NA chr10 82717664 GACxTAT T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 113 4 0 53.355799 0.442308 0.02 1.141451 29 23 834 579 60 60 0 0 TT 15.023249 50 0 1378 0 KEEP - Slc41a2 NO Spont_4 chr11 100065293 100065293 G C exonic Krt14 nonsynonymous SNV NM_016958:c.C1334G:p.S445C exonic Krt14 nonsynonymous SNV uc007lko.1:c.C683G:p.S228C exonic ENSMUSG00000045545 nonsynonymous SNV ENSMUST00000007272:c.C1334G:p.S445C 11qD NA NA chr11 100065293 CCAxAGG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 75 0 0 14.860166 0.184211 0.02 -0.333219 31 7 873 194 60 60 0 0 GG 10.227611 34 0 970 0 KEEP - Krt14 YES Spont_4 chr11 101285307 101285307 G C exonic Ptges3l nonsynonymous SNV NM_026865:c.C173G:p.A58G exonic 1700113I22Rik nonsynonymous SNV uc007lot.1:c.C173G:p.A58G exonic ENSMUSG00000075528 nonsynonymous SNV ENSMUST00000135860:c.C17G:p.A6G 11qD NA NA chr11 101285307 TTGxCAT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 338 5 0 168.863143 0.432432 0.02 2.280402 84 64 2386 1823 60 60 0 0 GG 41.153755 137 0 3726 0 KEEP - Ptges3l YES Spont_4 chr11 103062381 103062381 C G intronic 1700023F06Rik NA NA intronic 1700023F06Rik NA NA intronic ENSMUSG00000020940 NA NA 11qE1 NA NA chr11 103062381 TCTxTCT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 127 0 0 15.696529 0.123077 0.02 1.116416 57 8 1661 224 60 60 0 0 CC 12.935681 43 0 1233 0 KEEP - 1700023F06Rik YES Spont_4 chr11 105805721 105805721 G C upstream Cyb561 NA NA upstream Cyb561 NA NA UTR5 ENSMUSG00000019590 NA NA 11qE1 NA NA chr11 105805721 TCGxCGC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351693 0.353947 0.993634 34 1 0 59.033773 1 0.02 -0.166489 0 19 0 500 0 60 0 0 GG 3.606296 12 0 317 0 KEEP NA Cyb561 YES Spont_4 chr11 121112139 121112139 C T exonic Narf nonsynonymous SNV NM_026272:c.C1055T:p.A352V exonic Narf nonsynonymous SNV uc007mvq.2:c.C1055T:p.A352V exonic ENSMUSG00000000056 nonsynonymous SNV ENSMUST00000103015:c.C1055T:p.A352V 11qE2 NA NA chr11 121112139 CAGxGTA C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 76 1 0 7.263271 0.105263 0.02 -0.33305 34 4 881 109 60 60 0 0 CC 10.216297 34 0 851 0 KEEP + Narf NO Spont_4 chr11 29607459 29607459 G C exonic Rtn4 nonsynonymous SNV NM_194051:c.G1264C:p.E422Q exonic Rtn4 nonsynonymous SNV uc007ihk.2:c.G1612C:p.E538Q exonic ENSMUSG00000020458 nonsynonymous SNV ENSMUST00000102841:c.G1264C:p.E422Q 11qA3.3 NA NA chr11 29607459 TGTxAAA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 120 0 0 14.741268 0.127273 0.02 1.311196 48 7 1378 205 60 60 0 0 GG 15.342748 51 0 1470 0 KEEP + Rtn4 YES Spont_4 chr11 3032912 3032912 G A exonic Sfi1 stopgain SNV NM_030207:c.C3412T:p.Q1138X exonic "BC049259,Sfi1" stopgain SNV uc007hrv.1:c.C454T:p.Q152X exonic ENSMUSG00000023764 stopgain SNV ENSMUST00000072704:c.C1135T:p.Q379X 11qA1 "Score=0.940309;Name=No.15307,chr5:33066368" NA chr11 3032912 TTTxGTA G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1012 4 0 17.200224 0.032432 0.02 8.801951 358 12 10300 344 60 60 0 0 GG 138.285561 460 0 13086 0 KEEP + Sfi1 NO Spont_4 chr11 49028826 49028826 A G exonic Zfp62 nonsynonymous SNV NM_009562:c.A262G:p.S88G exonic Zfp62 nonsynonymous SNV uc007iqa.1:c.A241G:p.S81G exonic ENSMUSG00000046311 nonsynonymous SNV ENSMUST00000061757:c.A241G:p.S81G 11qB1.2 NA NA chr11 49028826 AAAxGTT A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 108 0 0 7.909165 0.108108 0.02 -0.324481 33 4 942 115 60 60 0 0 AA 15.037854 50 0 1391 0 KEEP + Zfp62 NO Spont_4 chr11 49643405 49643405 G C intronic Gfpt2 NA NA intronic Gfpt2 NA NA intronic ENSMUSG00000020363 NA NA 11qB1.2 NA NA chr11 49643405 GTAxCTG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999956 0.999956 1 181 0 0 20.570451 0.111111 0.02 0.925607 88 11 2462 303 60 60 0 0 GG 16.541842 55 0 1523 0 KEEP + Gfpt2 YES Spont_4 chr11 50669285 50669285 A T exonic Grm6 synonymous SNV NM_173372:c.A939T:p.L313L exonic Grm6 synonymous SNV uc007isu.2:c.A939T:p.L313L exonic ENSMUSG00000000617 synonymous SNV ENSMUST00000000631:c.A939T:p.L313L 11qB1.3 NA NA chr11 50669285 CCTxGAG A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976863 0.976865 0.999997 101 0 0 9.317529 0.090909 0.02 1.212918 50 5 1409 142 60 60 0 0 AA 9.623481 32 0 874 0 KEEP + Grm6 NO Spont_4 chr11 59301168 59301168 T A exonic Zkscan17 synonymous SNV NM_001130529:c.A1098T:p.P366P exonic "Zkscan17,Znf496" synonymous SNV uc007jea.2:c.A690T:p.P230P exonic ENSMUSG00000020472 synonymous SNV ENSMUST00000013262:c.A1158T:p.P386P 11qB1.3 NA NA chr11 59301168 GGCxGGG T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 193 2 0 177.780276 0.567568 0.02 2.613768 48 63 1340 1807 60 60 0 0 TT 18.644544 62 0 1700 0 KEEP - Zkscan17 NO Spont_4 chr11 60291787 60291787 C G exonic Myo15 nonsynonymous SNV NM_001103171:c.C1870G:p.P624A exonic Myo15 nonsynonymous SNV uc007jfz.1:c.C1870G:p.P624A exonic ENSMUSG00000042678 nonsynonymous SNV ENSMUST00000071880:c.C1870G:p.P624A 11qB2 NA NA chr11 60291787 CAGxCAC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 153 0 0 279.982411 0.977528 0.02 1.013389 2 87 53 2427 60 60 0 0 CC 16.514889 55 0 1471 0 KEEP + Myo15 YES Spont_4 chr11 69049721 69049721 C G exonic Gucy2e nonsynonymous SNV NM_008192:c.G427C:p.A143P exonic Gucy2e nonsynonymous SNV uc007jpn.2:c.G427C:p.A143P exonic ENSMUSG00000020890 nonsynonymous SNV ENSMUST00000021259:c.G427C:p.A143P 11qB3 NA NA chr11 69049721 GAGxCAA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 133 0 0 10.995437 0.076923 0.02 1.11133 72 6 1986 173 60 60 0 0 CC 11.729774 39 0 1073 0 KEEP - Gucy2e YES Spont_4 chr11 69213452 69213452 G C exonic Kdm6b nonsynonymous SNV NM_001017426:c.C4892G:p.A1631G exonic Kdm6b nonsynonymous SNV uc007jqd.1:c.C3428G:p.A1143G exonic ENSMUSG00000018476 nonsynonymous SNV ENSMUST00000094077:c.C4892G:p.A1631G 11qB3 NA NA chr11 69213452 AAGxCAT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976862 0.976865 0.999997 88 0 0 11.738878 0.109091 0.02 1.212886 49 6 1405 171 60 60 0 0 GG 8.406694 28 0 766 0 KEEP - Kdm6b YES Spont_4 chr11 70464690 70464690 C T exonic Rnf167 nonsynonymous SNV NM_027445:c.C1018T:p.P340S exonic Rnf167 nonsynonymous SNV uc007jvt.1:c.C1018T:p.P340S exonic ENSMUSG00000040746 nonsynonymous SNV ENSMUST00000037534:c.C1018T:p.P340S 11qB3 NA NA chr11 70464690 TCAxCTC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 562 0 0 34.50781 0.092166 0.02 4.878569 197 20 5562 538 60 60 0 0 CC 73.65831 245 0 6643 0 KEEP + Rnf167 NO Spont_4 chr11 70464691 70464691 C T exonic Rnf167 nonsynonymous SNV NM_027445:c.C1019T:p.P340L exonic Rnf167 nonsynonymous SNV uc007jvt.1:c.C1019T:p.P340L exonic ENSMUSG00000040746 nonsynonymous SNV ENSMUST00000037534:c.C1019T:p.P340L 11qB3 NA NA chr11 70464691 CACxTCC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 563 0 0 34.923681 0.087558 0.02 4.877856 198 19 5707 538 60 60 0 0 CC 74.24391 247 0 6874 0 KEEP + Rnf167 NO Spont_4 chr11 82770175 82770175 T G exonic Slfn5 nonsynonymous SNV NM_183201:c.T383G:p.V128G exonic Slfn5 nonsynonymous SNV uc007kny.1:c.T383G:p.V128G exonic ENSMUSG00000054404 nonsynonymous SNV ENSMUST00000108157:c.T383G:p.V128G 11qC NA NA chr11 82770175 AGGxCAT T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 44 0 0 74.084136 1 0.02 -0.20171 0 22 0 636 0 60 0 0 TT 6.012602 20 0 529 0 KEEP + Slfn5 NO Spont_4 chr11 94426940 94426940 C G exonic Chad nonsynonymous SNV NM_007689:c.C529G:p.L177V exonic Chad nonsynonymous SNV uc007kzd.1:c.C529G:p.L177V exonic ENSMUSG00000039084 nonsynonymous SNV ENSMUST00000040418:c.C529G:p.L177V 11qD NA NA chr11 94426940 TACxTGT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 222 2 0 358.526945 0.975806 0.02 2.295061 3 121 87 3071 60 60 0 0 CC 22.251081 74 0 2087 0 KEEP + Chad YES Spont_4 chr11 95692190 95692190 C G exonic Phospho1 nonsynonymous SNV NM_153104:c.C371G:p.A124G exonic Phospho1 nonsynonymous SNV uc007las.2:c.C371G:p.A124G exonic ENSMUSG00000050860 nonsynonymous SNV ENSMUST00000054173:c.C371G:p.A124G 11qD NA NA chr11 95692190 ATGxCAA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 211 0 0 11.176452 0.066038 0.02 2.550526 99 7 2811 190 60 60 0 0 CC 22.849637 76 0 2073 0 KEEP + Phospho1 YES Spont_4 chr11 96683605 96683605 C G exonic Nfe2l1 nonsynonymous SNV NM_001130453:c.G65C:p.R22P exonic Nfe2l1 nonsynonymous SNV uc007lcs.1:c.G539C:p.R180P exonic ENSMUSG00000038615 nonsynonymous SNV ENSMUST00000107658:c.G539C:p.R180P 11qD NA NA chr11 96683605 TGTxGCC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 175 0 0 7.537191 0.083333 0.02 -0.420616 44 4 1108 116 60 60 0 0 CC 27.238984 91 0 2293 0 KEEP - Nfe2l1 YES Spont_4 chr12 105458437 105458437 C G exonic Serpina3f nonsynonymous SNV NM_001168295:c.C1051G:p.L351V exonic Serpina3f nonsynonymous SNV uc007owx.2:c.C1051G:p.L351V exonic ENSMUSG00000066363 nonsynonymous SNV ENSMUST00000167049:c.C1051G:p.L351V 12qE NA NA chr12 105458437 GTGxTGG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 244 0 13 10.034695 0.0625 0.02 0.951901 90 6 2550 169 60 60 0 0 CC 31.584054 105 0 2957 0 KEEP + Serpina3f YES Spont_4 chr12 105929781 105929781 G C UTR3 Dicer1 NA NA UTR3 Dicer1 NA NA UTR3 ENSMUSG00000041415 NA NA 12qE NA NA chr12 105929781 CTTxCCG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 78 2 0 37.537544 0.451613 0.02 -0.271124 17 14 464 401 60 60 0 0 GG 11.732565 39 0 1122 0 KEEP - Dicer1 YES Spont_4 chr12 109349437 109349437 G T exonic Setd3 nonsynonymous SNV NM_028262:c.C1172A:p.T391N exonic Setd3 nonsynonymous SNV uc007ozk.2:c.C614A:p.T205N exonic ENSMUSG00000056770 nonsynonymous SNV ENSMUST00000085012:c.C614A:p.T205N 12qF1 NA NA chr12 109349437 TCGxTCA G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 60 0 0 39.090113 0.608696 0.02 -0.201679 9 14 247 391 60 60 0 0 GG 8.722662 29 0 809 0 KEEP - Setd3 NO Spont_4 chr12 112342027 112342027 C G intronic Rcor1 NA NA intronic Rcor1 NA NA intronic ENSMUSG00000037896 NA NA 12qF1 NA NA chr12 112342027 AAGxCCA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941612 0.941741 0.999863 74 0 0 11.181153 0.12766 0.02 -0.412108 41 6 1167 161 60 60 0 0 CC 6.000496 20 0 522 0 KEEP + Rcor1 YES Spont_4 chr12 112512739 112512739 C G exonic Amn synonymous SNV NM_033603:c.C465G:p.G155G exonic Amn synonymous SNV uc007pcp.1:c.C465G:p.G155G exonic ENSMUSG00000021278 synonymous SNV ENSMUST00000021707:c.C465G:p.G155G 12qF1 NA NA chr12 112512739 TGGxCCA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 212 1 0 89.576909 0.339623 0.02 2.65752 70 36 1993 1019 60 60 0 0 CC 22.119069 77 1 2115 9 KEEP + Amn YES Spont_4 chr12 115962033 115962033 C A intergenic "Adam6a(dist=1177408),Zfp386(dist=1323902)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076697 stopgain SNV ENSMUST00000103506:c.G298T:p.E100X 12qF2 "Score=0.94022;Name=No.26278,chr12:116081274" NA chr12 115962033 GCTxCAT C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 510 2 44 8.463987 0.041667 0.02 1.931825 138 6 3996 164 60 60 0 0 CC 80.910649 269 0 7629 0 KEEP - Adam6a NO Spont_4 chr12 70398128 70398128 C A exonic Klhdc2 synonymous SNV NM_027117:c.C147A:p.G49G exonic Klhdc2 synonymous SNV uc007nry.2:c.C147A:p.G49G exonic ENSMUSG00000020978 synonymous SNV ENSMUST00000021362:c.C147A:p.G49G 12qC2 NA NA chr12 70398128 CGGxTAC C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.688863 0.693668 0.993072 45 0 0 38.117303 0.5 0.02 -0.263042 15 15 434 400 60 60 0 0 CC 3.308723 11 0 308 0 KEEP + Klhdc2 NO Spont_4 chr12 74822895 74822895 G C intronic Prkch NA NA intronic Prkch NA NA intronic ENSMUSG00000021108 NA NA 12qC3 NA NA chr12 74822895 CGGxCGC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 92 0 0 54.895947 0.575758 0.02 -0.289367 14 19 387 556 60 60 0 0 GG 13.531988 45 0 1216 0 KEEP + Prkch YES Spont_4 chr12 77727972 77727972 C G exonic Sptb nonsynonymous SNV NM_013675:c.G1027C:p.A343P exonic Spnb1 nonsynonymous SNV uc007nyo.1:c.G1027C:p.A343P exonic ENSMUSG00000021061 nonsynonymous SNV ENSMUST00000021458:c.G1027C:p.A343P 12qC3 NA NA chr12 77727972 AGGxCTG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717217 0.717315 0.999863 59 0 0 31.739853 0.387097 0.02 -0.271845 19 12 530 350 60 60 0 0 CC 6.015639 20 0 555 0 KEEP - Sptb YES Spont_4 chr12 81210788 81210788 G C exonic Zfp36l1 nonsynonymous SNV NM_007564:c.C805G:p.P269A exonic Zfp36l1 nonsynonymous SNV uc007oal.1:c.C805G:p.P269A exonic ENSMUSG00000021127 nonsynonymous SNV ENSMUST00000021552:c.C805G:p.P269A 12qC3 "Score=0.957762;Name=No.31973,chrX:35533837" NA chr12 81210788 CAGxCAG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 230 1 0 10.143925 0.058252 0.02 2.401517 97 6 2734 172 60 60 0 0 GG 25.849298 86 0 2344 0 KEEP - Zfp36l1 YES Spont_4 chr12 86581712 86581712 C G intronic Mlh3 NA NA intronic Mlh3 NA NA intronic ENSMUSG00000021245 NA NA 12qD2 NA NA chr12 86581712 ATGxTCG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 108 0 0 45.401597 0.382979 0.02 -0.412149 29 18 818 504 60 60 0 0 CC 15.338561 51 0 1396 0 KEEP - Mlh3 YES Spont_4 chr12 89265848 89265848 T C intergenic "Gm2042(dist=66722),Gm21319(dist=54317)" NA NA ncRNA_intronic AK076896 NA NA ncRNA_exonic ENSMUSG00000092084 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89265848 ATAxTGG T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 365 11 43 13.38529 0.059701 0.02 2.334491 126 8 3466 227 60 60 0 0 TT 54.737132 182 0 4974 0 KEEP - Gm2042 NO Spont_4 chr12 89266473 89266473 C A intergenic "Gm2042(dist=67347),Gm21319(dist=53692)" NA NA ncRNA_intronic AK076896 NA NA intronic ENSMUSG00000092138 NA NA 12qD2 "Score=0.958366;Name=No.26164,chr12:89312203" NA chr12 89266473 AGGxCTT C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 107 3 1 17.051653 0.163265 0.02 -0.429696 41 8 1155 227 60 60 0 0 CC 13.23384 44 0 1211 0 KEEP - Gm2042 NO Spont_4 chr13 101309397 101309397 C G exonic Ocln nonsynonymous SNV NM_008756:c.G542C:p.G181A exonic Ocln nonsynonymous SNV uc007rqy.1:c.G542C:p.G181A exonic ENSMUSG00000021638 nonsynonymous SNV ENSMUST00000022140:c.G542C:p.G181A 13qD1 NA NA chr13 101309397 ATGxCCA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 103 2 0 9.068376 0.131579 0.02 -0.333219 33 5 938 131 60 60 0 0 CC 15.33942 51 0 1413 0 KEEP - Ocln YES Spont_4 chr13 103527940 103527940 C G exonic Mast4 nonsynonymous SNV NM_175171:c.G4999C:p.A1667P exonic Mast4 nonsynonymous SNV uc007rsb.2:c.G4999C:p.A1667P exonic ENSMUSG00000034751 nonsynonymous SNV ENSMUST00000171791:c.G4423C:p.A1475P 13qD1 NA NA chr13 103527940 TGGxCTG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 93 0 0 31.897202 0.304348 0.02 -0.403081 32 14 895 375 60 60 0 0 CC 11.704884 39 0 1077 0 KEEP - Mast4 YES Spont_4 chr13 109461681 109461681 G T intronic Pde4d NA NA intronic Pde4d NA NA intronic ENSMUSG00000021699 NA NA 13qD2.1 NA NA chr13 109461681 GTGxCAA G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 68 0 0 26.631669 0.434783 0.02 -0.201699 13 10 366 287 60 60 0 0 GG 12.285386 41 0 1099 0 KEEP + Pde4d NO Spont_4 chr13 18042651 18042651 C T intergenic "Rala(dist=6600),Yae1d1(dist=35823)" NA NA intergenic "Rala(dist=6600),1600012F09Rik(dist=35823)" NA NA intergenic "ENSMUSG00000008859(dist=6578),ENSMUSG00000075054(dist=35823)" NA NA 13qA2 NA NA chr13 18042651 GCGxGGG C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999998 57 0 0 30.834482 0.611111 0.02 -0.157668 7 11 156 308 60 60 0 0 CC 8.556785 33 1 818 12 KEEP NA Rala NO Spont_4 chr13 23228977 23228977 C G exonic Vmn1r218 nonsynonymous SNV NM_134222:c.C624G:p.H208Q exonic Vmn1r218 nonsynonymous SNV uc007pti.1:c.C624G:p.H208Q exonic ENSMUSG00000060490 nonsynonymous SNV ENSMUST00000074992:c.C624G:p.H208Q 13qA3.1 NA NA chr13 23228977 GCAxCAC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 237 5 0 19.840038 0.131579 0.02 1.128149 66 10 1829 279 60 60 0 0 CC 36.640099 122 0 3326 0 KEEP + Vmn1r218 YES Spont_4 chr14 103705443 103705443 G C exonic Mycbp2 nonsynonymous SNV NM_207215:c.C712G:p.P238A exonic Mycbp2 nonsynonymous SNV uc007uwl.1:c.C712G:p.P238A exonic ENSMUSG00000033004 nonsynonymous SNV ENSMUST00000039876:c.C598G:p.P200A 14qE2.3 NA NA chr14 103705443 CTGxCTG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 274 1 0 162.667155 0.448529 0.02 2.394422 75 61 2129 1742 60 60 0 0 GG 32.137365 107 0 2914 0 KEEP - Mycbp2 YES Spont_4 chr14 10719087 10719087 T G ncRNA_exonic Gm3833 NA NA ncRNA_exonic Gm3833 NA NA ncRNA_exonic ENSMUSG00000089686 NA NA 14qA1 NA NA chr14 10719087 GGTxTGA T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 214 0 1 8.626867 0.070588 0.02 1.048466 79 6 2212 151 60 60 0 0 TT 32.482916 108 0 2981 0 KEEP - Gm3833 NO Spont_4 chr14 121890865 121890865 A G intronic Slc15a1 NA NA UTR5 Slc15a1 NA NA intronic ENSMUSG00000025557 NA NA 14qE5 NA NA chr14 121890865 ATGxAGA A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 135 0 0 43.37609 0.395349 0.02 -0.377081 26 17 741 478 60 60 0 0 AA 21.656717 72 0 2006 0 KEEP - Slc15a1 NO Spont_4 chr14 26471509 26471509 G C intronic Zmiz1 NA NA intronic Zmiz1 NA NA intronic ENSMUSG00000007817 NA NA 14qA3 NA NA chr14 26471509 CGGxCTC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 172 0 0 12.668567 0.075269 0.02 0.879848 86 7 2428 201 60 60 0 0 GG 17.429187 58 0 1550 0 KEEP + Zmiz1 YES Spont_4 chr14 27852375 27852375 G C exonic Il17rd nonsynonymous SNV NM_134437:c.G86C:p.G29A exonic "Il17rd,Sef" nonsynonymous SNV uc007stk.1:c.G86C:p.G29A exonic ENSMUSG00000040717 nonsynonymous SNV ENSMUST00000035336:c.G86C:p.G29A 14qA3 NA NA chr14 27852375 GCGxCTC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 152 0 0 14.867043 0.087912 0.02 0.986805 83 8 2318 228 60 60 0 0 GG 13.831719 46 0 1232 0 KEEP + Il17rd YES Spont_4 chr14 48870329 48870329 G C exonic Peli2 nonsynonymous SNV NM_033602:c.G454C:p.A152P exonic Peli2 nonsynonymous SNV uc007tji.1:c.G154C:p.A52P exonic ENSMUSG00000021846 nonsynonymous SNV ENSMUST00000165560:c.G154C:p.A52P 14qC1 NA NA chr14 48870329 ACAxCAC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 DBSNP COVERED 1 1 1 328 0 0 224.358117 0.593985 0.02 2.377607 54 79 1534 2257 70 70 0 0 GG 51.717095 172 0 4688 0 KEEP + Peli2 YES Spont_4 chr14 51435085 51435085 A C exonic Parp2 nonsynonymous SNV NM_009632:c.A459C:p.K153N exonic Parp2 nonsynonymous SNV uc007tlq.1:c.A459C:p.K153N exonic ENSMUSG00000036023 nonsynonymous SNV ENSMUST00000036126:c.A459C:p.K153N 14qC1 NA NA chr14 51435085 AAAxGAA A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 76 0 0 27.57621 0.413793 0.02 -0.254256 17 12 494 304 60 60 0 0 AA 8.721566 29 0 805 0 KEEP + Parp2 NO Spont_4 chr14 56162839 56162839 C A exonic Pck2 synonymous SNV NM_028994:c.C684A:p.A228A exonic Pck2 synonymous SNV uc007tyx.1:c.C684A:p.A228A exonic ENSMUSG00000040618 synonymous SNV ENSMUST00000048781:c.C684A:p.A228A 14qC3 NA NA chr14 56162839 GGCxCTG C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963773 0.963774 0.999999 94 0 0 69.074202 0.509804 0.02 1.248506 25 26 687 720 60 60 0 0 CC 10.763477 36 0 972 0 KEEP + Pck2 NO Spont_4 chr14 64590282 64590282 C A exonic 4930578I06Rik nonsynonymous SNV NM_026359:c.G677T:p.S226I exonic 4930578I06Rik nonsynonymous SNV uc007uhz.1:c.G677T:p.S226I exonic ENSMUSG00000021961 nonsynonymous SNV ENSMUST00000022532:c.G677T:p.S226I 14qD1 NA NA chr14 64590282 TCAxTGA C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 52 0 0 7.995612 0.148148 0.02 -0.236513 23 4 630 110 60 60 0 0 CC 5.113886 17 0 485 0 KEEP - 4930578I06Rik NO Spont_4 chr14 64694289 64694289 C T UTR3 Prss55 NA NA UTR3 Prss55 NA NA UTR3 ENSMUSG00000034623 NA NA 14qD1 NA NA chr14 64694289 GATxAGA C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522093 0.522161 0.999869 50 0 0 8.515012 0.166667 0.02 -0.210453 20 4 571 113 60 60 0 0 CC 6.310465 21 0 595 0 KEEP - Prss55 NO Spont_4 chr14 70584853 70584853 T A exonic Sorbs3 nonsynonymous SNV NM_001271409:c.A499T:p.S167C exonic Sorbs3 nonsynonymous SNV uc007unk.1:c.A1555T:p.S519C exonic ENSMUSG00000022091 nonsynonymous SNV ENSMUST00000022682:c.A1714T:p.S572C 14qD2 NA NA chr14 70584853 AGCxGGC T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 182 0 0 22.318466 0.114583 0.02 0.951683 85 11 2413 319 70 70 0 0 TT 18.3377 61 0 1669 0 KEEP - Sorbs3 NO Spont_4 chr15 25669136 25669136 C G intronic Myo10 NA NA intronic Myo10 NA NA intronic ENSMUSG00000022272 NA NA 15qB1 NA NA chr15 25669136 TTTxTCC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 178 0 0 19.479289 0.117021 0.02 1.06851 83 11 2371 289 60 60 0 0 CC 18.950134 63 0 1785 0 KEEP + Myo10 YES Spont_4 chr15 34372435 34372435 C G exonic Rpl30 nonsynonymous SNV NM_009083:c.G122C:p.G41A exonic Rpl30 nonsynonymous SNV uc007vlq.2:c.G122C:p.G41A exonic ENSMUSG00000058600 nonsynonymous SNV ENSMUST00000009039:c.G122C:p.G41A 15qB3.1 NA NA chr15 34372435 TTGxCTT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 411 1 0 19.963836 0.054795 0.02 5.155523 207 12 5882 344 60 60 0 0 CC 42.698993 142 0 3921 0 KEEP - Rpl30 YES Spont_4 chr15 74672091 74672091 G C upstream Cyp11b1 NA NA upstream Cyp11b1 NA NA upstream ENSMUSG00000075604 NA NA 15qD3 NA NA chr15 74672091 AAGxACA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967218 0.973965 0.993072 68 0 0 47.150546 0.351852 0.02 1.319999 35 19 1022 533 60 60 0 0 GG 3.309134 11 0 315 0 KEEP NA Cyp11b1 YES Spont_4 chr15 77579798 77579798 C G exonic Apol8 nonsynonymous SNV NM_001081970:c.G1007C:p.G336A exonic Apol8 nonsynonymous SNV uc007woa.2:c.G1007C:p.G336A exonic ENSMUSG00000056656 nonsynonymous SNV ENSMUST00000089450:c.G929C:p.G310A 15qE1 NA NA chr15 77579798 GAGxCTG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 429 2 0 102.837392 0.283019 0.02 3.987606 114 45 3210 1225 60 60 0 0 CC 61.89536 206 0 5634 0 KEEP - Apol8 YES Spont_4 chr15 80786602 80786602 G C intronic Adsl NA NA intronic Adsl NA NA intronic ENSMUSG00000022407 NA NA 15qE1 NA NA chr15 80786602 TCAxTTG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 339 0 0 17.29909 0.052885 0.02 5.153474 197 11 5655 307 60 60 0 0 GG 29.48106 98 0 2807 0 KEEP + Adsl YES Spont_4 chr15 81960547 81960547 G A exonic Ccdc134 nonsynonymous SNV NM_172428:c.G50A:p.G17D exonic Ccdc134 nonsynonymous SNV uc007wye.1:c.G50A:p.G17D exonic ENSMUSG00000068114 nonsynonymous SNV ENSMUST00000089174:c.G50A:p.G17D 15qE1 NA NA chr15 81960547 CTGxCAC G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 158 2 0 10.489813 0.071429 0.02 0.958631 78 6 2205 170 60 60 0 0 GG 14.704046 49 0 1345 0 KEEP + Ccdc134 NO Spont_4 chr15 88932774 88932774 C G exonic Tubgcp6 nonsynonymous SNV NM_001163319:c.G4075C:p.A1359P exonic Tubgcp6 nonsynonymous SNV uc007xfh.2:c.G4075C:p.A1359P exonic ENSMUSG00000051786 nonsynonymous SNV ENSMUST00000063284:c.G1315C:p.A439P 15qE3 NA NA chr15 88932774 TGGxCTC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999108 0.99911 0.999999 127 0 0 103.819332 0.493671 0.02 1.100812 40 39 1124 1090 60 60 0 0 CC 10.481256 35 0 943 0 KEEP - Tubgcp6 YES Spont_4 chr15 88933566 88933566 A C exonic Tubgcp6 nonsynonymous SNV NM_001163319:c.T3633G:p.I1211M exonic Tubgcp6 nonsynonymous SNV uc007xfh.2:c.T3633G:p.I1211M exonic ENSMUSG00000051786 nonsynonymous SNV ENSMUST00000063284:c.T873G:p.I291M 15qE3 NA NA chr15 88933566 CCTxATA A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 663 2 0 38.884015 0.057789 0.02 8.966939 375 23 10275 660 60 60 0 0 AA 60.13059 200 0 5377 0 KEEP - Tubgcp6 NO Spont_4 chr15 89400421 89400421 A T exonic Acr nonsynonymous SNV NM_001205049:c.A529T:p.T177S exonic Acr nonsynonymous SNV uc007xhc.1:c.A529T:p.T177S exonic ENSMUSG00000022622 nonsynonymous SNV ENSMUST00000023295:c.A529T:p.T177S 15qE3 NA NA chr15 89400421 CACxCCT A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995644 0.995687 0.999957 107 0 0 9.437797 0.073529 0.02 1.296024 63 5 1724 148 60 60 0 0 AA 6.698377 25 1 658 7 KEEP + Acr NO Spont_4 chr15 97808836 97808836 G C exonic Col2a1 nonsynonymous SNV NM_001113515:c.C3326G:p.S1109C exonic Col2a1 nonsynonymous SNV uc007xlq.2:c.C3326G:p.S1109C exonic ENSMUSG00000022483 nonsynonymous SNV ENSMUST00000088354:c.C3443G:p.S1148C 15qF1 NA NA chr15 97808836 TTAxAGC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 205 0 0 21.868638 0.113402 0.02 0.943194 86 11 2475 315 60 60 0 0 GG 18.639838 62 0 1771 0 KEEP - Col2a1 YES Spont_4 chr15 98696978 98696978 G C intronic Kmt2d NA NA intronic Mll2 NA NA intronic ENSMUSG00000048154 NA NA 15qF1 NA NA chr15 98696978 AGAxAAC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 134 0 0 36.561443 0.193182 0.02 1.012987 71 17 2087 472 60 60 0 0 GG 12.032367 40 0 1138 0 KEEP - Kmt2d YES Spont_4 chr15 98781003 98781003 G C exonic Tuba1a nonsynonymous SNV NM_011653:c.C818G:p.A273G exonic Tuba1a nonsynonymous SNV uc007xok.1:c.C818G:p.A273G exonic ENSMUSG00000072235 nonsynonymous SNV ENSMUST00000097014:c.C818G:p.A273G 15qF1 "Score=0.983344;Name=No.57823,chr15:98762012" NA chr15 98781003 GGGxCAT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 537 0 105 66.33004 0.177778 0.02 5.403192 148 32 4202 876 53 60 0 0 GG 74.820043 249 0 6868 0 KEEP - Tuba1a YES Spont_4 chr15 99110704 99110704 T G exonic Fam186b nonsynonymous SNV NM_001081254:c.A1171C:p.I391L exonic Fam186b nonsynonymous SNV uc007xpf.1:c.A1171C:p.I391L exonic ENSMUSG00000078907 nonsynonymous SNV ENSMUST00000109100:c.A1171C:p.I391L 15qF1 NA NA chr15 99110704 AGAxTGG T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 243 2 0 84.7002 0.219653 0.02 3.864088 135 38 3667 1061 60 60 0 0 TT 12.629127 42 0 1132 0 KEEP - Fam186b NO Spont_4 chr16 20344751 20344751 C G exonic Abcc5 nonsynonymous SNV NM_013790:c.G3808C:p.A1270P exonic Abcc5 nonsynonymous SNV uc007ypp.1:c.G3808C:p.A1270P exonic ENSMUSG00000022822 nonsynonymous SNV ENSMUST00000079158:c.G3808C:p.A1270P 16qA3 NA NA chr16 20344751 TGGxCAG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138793 0.139832 0.99257 21 0 0 6.901638 0.25 0.02 -0.105217 9 3 247 84 60 60 0 0 CC 2.406377 8 0 224 0 KEEP - Abcc5 YES Spont_4 chr16 88829836 88829836 C T UTR3 Krtap15 NA NA UTR3 Krtap15 NA NA downstream ENSMUSG00000022931 NA NA 16qC3.3 NA NA chr16 88829836 TCCxCAG C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 129 0 0 16.71024 0.126984 0.02 1.241021 55 8 1587 233 60 60 0 0 CC 15.941377 53 0 1473 0 KEEP + Krtap15 NO Spont_4 chr17 12616634 12616634 G C exonic Slc22a3 nonsynonymous SNV NM_011395:c.C1561G:p.P521A exonic Slc22a3 nonsynonymous SNV uc008aku.1:c.C1561G:p.P521A exonic ENSMUSG00000023828 nonsynonymous SNV ENSMUST00000024595:c.C1561G:p.P521A 17qA1 NA NA chr17 12616634 CCGxCAA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 207 6 0 100.418586 0.402062 0.02 0.943035 58 39 1647 1102 60 60 0 0 GG 22.255321 74 0 2056 0 KEEP - Slc22a3 YES Spont_4 chr17 25459352 25459352 G C exonic Prss29 nonsynonymous SNV NM_053260:c.G740C:p.S247T exonic Prss29 nonsynonymous SNV uc008bap.2:c.G740C:p.S247T exonic ENSMUSG00000034039 nonsynonymous SNV ENSMUST00000024993:c.G740C:p.S247T 17qA3.3 NA NA chr17 25459352 TGAxCTG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 145 0 0 7.868698 0.054348 0.02 0.888428 87 5 2481 139 60 60 0 0 GG 11.729249 39 0 1074 0 KEEP + Prss29 YES Spont_4 chr17 28467554 28467554 G C exonic Rpl10a nonsynonymous SNV NM_011287:c.G395C:p.G132A exonic Rpl10a nonsynonymous SNV uc008bqq.2:c.G305C:p.G102A exonic ENSMUSG00000037805 nonsynonymous SNV ENSMUST00000042334:c.G395C:p.G132A 17qA3.3 NA NA chr17 28467554 CTGxCAA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612323 0.612407 0.999863 68 6 12 13.553175 0.222222 0.02 -0.236791 21 6 612 169 60 60 0 0 GG 8.421381 28 0 769 0 KEEP + Rpl10a YES Spont_4 chr17 28913256 28913256 T C exonic Mapk13 nonsynonymous SNV NM_011950:c.T505C:p.F169L exonic Mapk13 nonsynonymous SNV uc008bro.2:c.T505C:p.F169L exonic ENSMUSG00000004864 nonsynonymous SNV ENSMUST00000004986:c.T505C:p.F169L 17qA3.3 NA NA chr17 28913256 GACxTTG T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 182 1 0 49.101842 0.2 0.02 2.613723 88 22 2461 625 60 60 0 0 TT 12.928467 43 0 1174 0 KEEP + Mapk13 NO Spont_4 chr17 31264266 31264266 C G intronic Tff3 NA NA intronic Tff3 NA NA intronic ENSMUSG00000024029 NA NA 17qA3.3 NA NA chr17 31264266 CCAxATG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996634 0.996724 0.999909 104 0 0 43.592837 0.26087 0.02 1.17971 51 18 1400 522 60 60 0 0 CC 7.217981 24 0 653 0 KEEP - Tff3 YES Spont_4 chr17 32458411 32458411 G C UTR3 Akap8l NA NA UTR3 Akap8l NA NA UTR3 ENSMUSG00000002625 NA NA 17qB1 NA NA chr17 32458411 TCGxCCA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994302 0.994422 0.999879 100 0 0 10.250523 0.090909 0.02 1.019077 60 6 1693 161 60 60 0 0 GG 6.582197 22 0 583 0 KEEP - Akap8l YES Spont_4 chr17 33985152 33985152 T G intronic Cd320 NA NA intronic Cd320 NA NA intronic ENSMUSG00000002308 NA NA 17qB1 NA NA chr17 33985152 AACxTGG T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 282 1 0 95.214938 0.27957 0.02 3.260899 134 52 3859 1183 60 60 0 0 TT 24.664599 82 0 2284 0 KEEP + Cd320 NO Spont_4 chr17 34194552 34194552 G C intronic Col11a2 NA NA intronic Col11a2 NA NA intronic ENSMUSG00000024330 NA NA 17qB1 NA NA chr17 34194552 CTGxCTT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 184 1 0 75.030553 0.300971 0.02 2.683808 72 31 2058 876 60 60 0 0 GG 13.773875 46 0 1233 0 KEEP + Col11a2 YES Spont_4 chr17 34349180 34349180 G T exonic Tap2 nonsynonymous SNV NM_011530:c.G1146T:p.M382I exonic Tap2 nonsynonymous SNV uc008cbx.2:c.G1146T:p.M382I exonic "ENSMUSG00000024339,ENSMUSG00000081512" nonsynonymous SNV ENSMUST00000025197:c.G1146T:p.M382I 17qB1 NA NA chr17 34349180 GATxGCC G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 433 0 0 409.887339 0.595142 0.02 5.008192 100 147 2862 4122 60 60 0 0 GG 30.930914 103 0 2888 0 KEEP + Tap2 NO Spont_4 chr17 35089348 35089348 C G ncRNA_exonic 1110038B12Rik NA NA ncRNA_exonic 1110038B12Rik NA NA ncRNA_exonic ENSMUSG00000092203 NA NA 17qB1 NA NA chr17 35089348 CTGxCCA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 171 0 0 8.049904 0.051546 0.02 0.844579 92 5 2619 142 60 60 0 0 CC 16.237742 54 0 1470 0 KEEP - 1110038B12Rik YES Spont_4 chr17 56113795 56113795 G A intronic Shd NA NA intronic Shd NA NA intronic ENSMUSG00000039154 NA NA 17qD NA NA chr17 56113795 AGGxACA G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.953887 0.954491 0.999366 71 0 0 14.381904 0.163265 0.02 -0.429382 41 8 1183 200 60 60 0 0 GG 5.112487 17 0 465 0 KEEP + Shd NO Spont_4 chr17 56158740 56158740 G C exonic Sh3gl1 nonsynonymous SNV NM_001252471:c.C330G:p.F110L exonic Sh3gl1 nonsynonymous SNV uc008daq.1:c.C330G:p.F110L exonic ENSMUSG00000003200 nonsynonymous SNV ENSMUST00000003268:c.C330G:p.F110L 17qD NA NA chr17 56158740 ACCxAAG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 811 5 0 19.319661 0.035714 0.02 9.062571 351 13 8994 374 60 60 0 0 GG 93.671762 312 0 8019 0 KEEP - Sh3gl1 YES Spont_4 chr17 56909189 56909189 C G exonic Dus3l synonymous SNV NM_144858:c.C1872G:p.G624G exonic Dus3l synonymous SNV uc008dde.2:c.C783G:p.G261G exonic ENSMUSG00000007603 synonymous SNV ENSMUST00000007747:c.C1872G:p.G624G 17qD NA NA chr17 56909189 TGGxTTC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 366 2 0 14.578291 0.05102 0.02 3.269558 186 10 5331 269 60 60 0 0 CC 33.689824 112 0 3167 0 KEEP + Dus3l YES Spont_4 chr17 57042099 57042099 G C exonic Mllt1 nonsynonymous SNV NM_022328:c.C433G:p.P145A exonic Mllt1 nonsynonymous SNV uc008ddk.1:c.C433G:p.P145A exonic ENSMUSG00000024212 nonsynonymous SNV ENSMUST00000025053:c.C433G:p.P145A 17qD NA NA chr17 57042099 CGGxCAT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 223 0 0 9.435874 0.041379 0.02 2.217217 139 6 3959 174 60 60 0 0 GG 13.835247 46 0 1263 0 KEEP - Mllt1 YES Spont_4 chr17 69737954 69737954 G C exonic Zbtb14 nonsynonymous SNV NM_009547:c.G1306C:p.A436P exonic Zfp161 nonsynonymous SNV uc008dkt.1:c.G1306C:p.A436P exonic ENSMUSG00000049672 nonsynonymous SNV ENSMUST00000062369:c.G1306C:p.A436P 17qE1.3 "Score=0.993859;Name=No.68050,chr7:100074141" NA chr17 69737954 ATGxCCG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.79851 0.800245 0.997832 63 0 3 46.378237 0.485714 0.02 -0.306942 18 17 514 488 60 60 0 0 GG 5.1131 17 0 468 0 KEEP + Zbtb14 YES Spont_4 chr17 74965213 74965213 G C exonic Birc6 nonsynonymous SNV NM_007566:c.G1126C:p.A376P exonic Birc6 nonsynonymous SNV uc008doe.1:c.G1042C:p.A348P exonic ENSMUSG00000024073 nonsynonymous SNV ENSMUST00000024879:c.G1042C:p.A348P 17qE2 NA NA chr17 74965213 CTGxCAA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 359 0 0 217.346634 0.429319 0.02 3.688106 109 82 3097 2349 60 60 0 0 GG 40.553978 135 0 3657 0 KEEP + Birc6 YES Spont_4 chr17 75937864 75937864 T C exonic Fam98a nonsynonymous SNV NM_133747:c.A1226G:p.H409R exonic Fam98a nonsynonymous SNV uc008doq.1:c.A1226G:p.H409R exonic ENSMUSG00000002017 nonsynonymous SNV ENSMUST00000112507:c.A1226G:p.H409R 17qE2 "Score=0.930233;Name=No.67466,chr5:28144026" NA chr17 75937864 CCAxGAT T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 276 0 0 12.720317 0.048649 0.02 3.365762 176 9 4761 240 60 60 0 0 TT 21.952926 73 0 1958 0 KEEP - Fam98a NO Spont_4 chr18 37966467 37966467 A T exonic Pcdhgc3 nonsynonymous SNV NM_033581:c.A266T:p.N89I exonic Pcdhgc3 nonsynonymous SNV uc008ere.1:c.A266T:p.N89I exonic ENSMUSG00000023036 nonsynonymous SNV ENSMUST00000076807:c.A266T:p.N89I 18qB3 NA NA chr18 37966467 TCAxCGA A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 483 7 0 35.670853 0.095477 0.02 3.439049 180 19 4991 538 60 60 0 0 AA 64.307742 214 0 5715 0 KEEP + Pcdhgc3 NO Spont_4 chr18 46335360 46335360 C A intronic Trim36 NA NA intronic Trim36 NA NA intronic ENSMUSG00000033949 NA NA 18qC NA NA chr18 46335360 ATTxTTT C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 75 2 0 34.672583 0.411765 0.02 -0.306914 20 14 568 380 60 60 0 0 CC 9.625876 32 0 911 0 KEEP - Trim36 NO Spont_4 chr18 4672811 4672811 G C exonic 9430020K01Rik nonsynonymous SNV NM_001081963:c.G574C:p.A192P exonic 9430020K01Rik nonsynonymous SNV uc012ayy.1:c.G574C:p.A192P exonic ENSMUSG00000033960 nonsynonymous SNV ENSMUST00000037029:c.G574C:p.A192P 18qA1 NA NA chr18 4672811 CAGxCAT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 88 0 0 37.116925 0.333333 0.02 -0.403398 30 15 856 424 60 60 0 0 GG 11.108687 37 0 1007 0 KEEP + 9430020K01Rik YES Spont_4 chr18 59114316 59114316 T A splicing Adamts19(NM_175506:exon10:c.1761+2T>A) NA NA splicing Adamts19(uc008ezs.1:exon10:c.1761+2T>A) NA NA splicing ENSMUSG00000053441(ENSMUST00000052907:exon10:c.1761+2T>A) NA NA 18qD3 NA NA chr18 59114316 AGGxAAG T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780976 0.78106 0.999892 65 0 0 24.527694 0.294118 0.02 -0.298132 24 10 653 287 60 60 0 0 TT 6.916171 23 0 611 0 KEEP + Adamts19 NO Spont_4 chr18 60991474 60991474 C G exonic Tcof1 nonsynonymous SNV NM_001198984:c.G1826C:p.S609T exonic Tcof1 nonsynonymous SNV uc012bdn.1:c.G1682C:p.S561T exonic ENSMUSG00000024613 nonsynonymous SNV ENSMUST00000097562:c.G1682C:p.S561T 18qE1 NA NA chr18 60991474 TCAxTGG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 283 0 0 9.353338 0.048387 0.02 2.303094 118 6 3317 169 60 60 0 0 CC 36.696672 122 0 3428 0 KEEP - Tcof1 YES Spont_4 chr18 84838331 84838331 A G exonic Cndp2 nonsynonymous SNV NM_023149:c.T1202C:p.L401P exonic Cndp2 nonsynonymous SNV uc008fut.1:c.T1202C:p.L401P exonic ENSMUSG00000024644 stoploss SNV ENSMUST00000097500:c.T1201C:p.X401R 18qE4 NA NA chr18 84838331 TTCxGGG A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717215 0.717315 0.99986 56 0 0 32.600112 0.451613 0.02 -0.271766 17 14 487 352 60 60 0 0 AA 5.413681 18 0 494 0 KEEP - Cndp2 NO Spont_4 chr19 10787156 10787156 C T exonic Vps37c nonsynonymous SNV NM_181403:c.C491T:p.P164L exonic Vps37c nonsynonymous SNV uc008gqr.1:c.C167T:p.P56L exonic ENSMUSG00000048832 nonsynonymous SNV ENSMUST00000087951:c.C491T:p.P164L 19qA NA NA chr19 10787156 TGCxGGA C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888814 0.888875 0.999931 72 0 0 47.933936 0.45 0.02 -0.359475 22 18 591 513 60 60 0 0 CC 7.212124 24 0 603 0 KEEP + Vps37c NO Spont_4 chr19 3411585 3411585 G T exonic Gal nonsynonymous SNV NM_010253:c.C199A:p.Q67K exonic Gal nonsynonymous SNV uc008fwj.1:c.C199A:p.Q67K exonic ENSMUSG00000024907 nonsynonymous SNV ENSMUST00000025842:c.C199A:p.Q67K 19qA NA NA chr19 3411585 GTTxTAA G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 344 2 0 30.393257 0.10596 0.02 3.859813 135 16 3827 449 60 60 0 0 GG 39.103253 130 0 3675 0 KEEP - Gal NO Spont_4 chr19 40643586 40643586 C G exonic Aldh18a1 nonsynonymous SNV NM_019698:c.G1015C:p.V339L exonic Aldh18a1 nonsynonymous SNV uc008hkw.2:c.G1009C:p.V337L exonic ENSMUSG00000025007 nonsynonymous SNV ENSMUST00000025979:c.G1015C:p.V339L 19qC3 NA NA chr19 40643586 TGAxGTG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351961 0.353947 0.994391 36 0 0 21.202608 0.421053 0.02 -0.166546 11 8 277 230 60 60 0 0 CC 3.907527 13 0 334 0 KEEP - Aldh18a1 YES Spont_4 chr19 43922625 43922625 G C exonic Dnmbp synonymous SNV NM_028029:c.C4701G:p.G1567G exonic Dnmbp synonymous SNV uc008hox.1:c.C2430G:p.G810G exonic ENSMUSG00000025195 synonymous SNV ENSMUST00000026209:c.C4701G:p.G1567G 19qC3 NA NA chr19 43922625 GTAxCCC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 83 0 0 57.298295 0.44 0.02 -0.438451 28 22 793 617 60 60 0 0 GG 8.421884 28 0 785 0 KEEP - Dnmbp YES Spont_4 chr19 46146308 46146308 C T exonic Pprc1 synonymous SNV NM_001081214:c.C4674T:p.V1558V exonic Pprc1 synonymous SNV uc008hsd.1:c.C4674T:p.V1558V exonic ENSMUSG00000055491 synonymous SNV ENSMUST00000062322:c.C4680T:p.V1560V 19qC3 NA NA chr19 46146308 TGTxCAA C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 82 1 0 6.819258 0.114286 0.02 -0.306899 31 4 891 103 60 60 0 0 CC 11.728729 39 0 1089 0 KEEP + Pprc1 NO Spont_4 chr19 5117273 5117273 G C exonic Klc2 nonsynonymous SNV NM_008451:c.C149G:p.A50G exonic Klc2 nonsynonymous SNV uc008gcg.1:c.C149G:p.A50G exonic ENSMUSG00000024862 nonsynonymous SNV ENSMUST00000156717:c.C149G:p.A50G 19qA NA NA chr19 5117273 TCGxCCT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 49 0 0 38.425976 0.56 0.02 -0.219173 11 14 296 392 60 60 0 0 GG 5.10451 17 0 445 0 KEEP - Klc2 YES Spont_4 chr19 56798229 56798229 G C exonic Adrb1 synonymous SNV NM_007419:c.G1368C:p.G456G exonic Adrb1 synonymous SNV uc008hze.2:c.G1368C:p.G456G exonic ENSMUSG00000035283 synonymous SNV ENSMUST00000038949:c.G1368C:p.G456G 19qD2 NA NA chr19 56798229 GGGxCGC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 162 2 0 39.062931 0.242857 0.02 1.179759 53 17 1521 478 60 60 0 0 GG 18.195648 61 0 1591 0 KEEP + Adrb1 YES Spont_4 chr19 58806674 58806674 G C intronic Pnliprp1 NA NA intronic Pnliprp1 NA NA intronic ENSMUSG00000042179 NA NA 19qD2 NA NA chr19 58806674 GGAxCGC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.91302 0.918171 0.994391 59 0 0 7.799754 0.090909 0.02 -0.384456 40 4 1091 117 60 60 0 0 GG 3.910041 13 0 359 0 KEEP + Pnliprp1 YES Spont_4 chr19 6007325 6007325 C A exonic Capn1 synonymous SNV NM_001110504:c.G1092T:p.R364R exonic Capn1 synonymous SNV uc008ggj.2:c.G1092T:p.R364R exonic ENSMUSG00000024942 synonymous SNV ENSMUST00000025891:c.G1092T:p.R364R 19qA NA NA chr19 6007325 ATTxCGG C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999315 0.999317 0.999997 122 0 0 16.798424 0.123457 0.02 0.889377 71 10 2019 250 60 60 0 0 CC 9.623391 32 0 885 0 KEEP - Capn1 NO Spont_4 chr19 61303217 61303217 G C exonic Csf2ra nonsynonymous SNV NM_009970:c.C52G:p.L18V exonic Csf2ra nonsynonymous SNV uc008icj.2:c.C52G:p.L18V exonic ENSMUSG00000059326 nonsynonymous SNV ENSMUST00000076046:c.C52G:p.L18V 19qD3 NA NA chr19 61303217 AGAxCAG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 149 0 0 91.599128 0.426829 0.02 1.074626 47 35 1321 992 60 60 0 0 GG 14.438527 48 0 1354 0 KEEP - Csf2ra YES Spont_4 chr1 129873117 129873117 T C exonic Zranb3 nonsynonymous SNV NM_027678:c.A1541G:p.E514G exonic Zranb3 nonsynonymous SNV uc007cld.1:c.A1541G:p.E514G exonic ENSMUSG00000036086 nonsynonymous SNV ENSMUST00000037426:c.A1541G:p.E514G 1qE4 NA NA chr1 129873117 TTTxCAA T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.99986 40 0 0 30.226534 0.578947 0.02 -0.166598 8 11 226 306 60 60 0 0 TT 5.693708 19 0 503 0 KEEP - Zranb3 NO Spont_4 chr1 135811448 135811448 T A exonic Prelp nonsynonymous SNV NM_054077:c.A535T:p.I179F exonic Prelp nonsynonymous SNV uc007crc.2:c.A535T:p.I179F exonic ENSMUSG00000041577 nonsynonymous SNV ENSMUST00000048432:c.A535T:p.I179F 1qE4 NA NA chr1 135811448 AAAxGAG T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612019 0.612407 0.999366 46 2 0 10.661137 0.192308 0.02 -0.236706 21 5 557 138 60 60 0 0 TT 5.111832 17 0 452 0 KEEP - Prelp NO Spont_4 chr1 137705295 137705295 C G exonic Tnni1 unknown UNKNOWN exonic Tnni1 nonsynonymous SNV uc011wsm.1:c.C362G:p.A121G exonic ENSMUSG00000026418 nonsynonymous SNV ENSMUST00000148201:c.C365G:p.A122G 1qE4 NA NA chr1 137705295 ATGxCAT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 227 2 0 34.680004 0.164948 0.02 0.942849 81 16 2339 459 60 60 0 0 CC 31.576029 105 0 2908 0 KEEP + Tnni1 YES Spont_4 chr1 137967551 137967551 C T exonic Cacna1s synonymous SNV NM_001081023:c.C606T:p.L202L exonic Cacna1s synonymous SNV uc007cuf.1:c.C606T:p.L202L exonic ENSMUSG00000026407 synonymous SNV ENSMUST00000057096:c.C606T:p.L202L 1qE4 NA NA chr1 137967551 GCTxGTC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 227 1 0 103.134402 0.307143 0.02 2.253202 97 43 2406 1201 60 60 0 0 CC 18.922472 63 0 1523 0 KEEP + Cacna1s NO Spont_4 chr1 152301482 152301482 G C exonic Prg4 nonsynonymous SNV NM_021400:c.C2569G:p.P857A exonic Prg4 nonsynonymous SNV uc007cyg.2:c.C2569G:p.P857A exonic ENSMUSG00000006014 nonsynonymous SNV ENSMUST00000111901:c.C1801G:p.P601A 1qG1 NA NA chr1 152301482 TTGxCTT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 186 0 0 134.477145 0.569767 0.02 1.013863 37 49 1028 1367 60 60 0 0 GG 25.245692 84 0 2325 0 KEEP - Prg4 YES Spont_4 chr1 157626597 157626597 C G exonic Qsox1 nonsynonymous SNV NM_001024945:c.G1949C:p.R650T exonic Qsox1 nonsynonymous SNV uc007dbp.1:c.G1949C:p.R650T exonic ENSMUSG00000033684 nonsynonymous SNV ENSMUST00000035325:c.G1949C:p.R650T 1qG3 NA NA chr1 157626597 TCTxTCT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 139 0 0 13.109237 0.08642 0.02 0.986188 74 7 2143 201 60 60 0 0 CC 12.476451 46 1 1308 12 KEEP - Qsox1 YES Spont_4 chr1 157726232 157726232 C G exonic Cep350 nonsynonymous SNV NM_001039184:c.G5766C:p.E1922D exonic Cep350 nonsynonymous SNV uc007dbs.2:c.G5766C:p.E1922D exonic ENSMUSG00000033671 nonsynonymous SNV ENSMUST00000138762:c.G5766C:p.E1922D 1qG3 NA NA chr1 157726232 TCCxTCT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 66 0 0 7.295299 0.148148 0.02 -0.236769 23 4 664 103 60 60 0 0 CC 8.711775 29 0 810 0 KEEP - Cep350 YES Spont_4 chr1 168131788 168131788 C G exonic Mael nonsynonymous SNV NM_175296:c.G1196C:p.S399T exonic Mael nonsynonymous SNV uc007dkk.1:c.G1196C:p.S399T exonic ENSMUSG00000040629 nonsynonymous SNV ENSMUST00000038782:c.G1196C:p.S399T 1qH2.3 NA NA chr1 168131788 ATGxTCT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 143 0 0 16.812054 0.121622 0.02 0.94852 65 9 1852 244 60 60 0 0 CC 18.3504 61 0 1743 0 KEEP - Mael YES Spont_4 chr1 175836360 175836360 G T exonic Mnda nonsynonymous SNV NM_001033450:c.C365A:p.T122N exonic "Ifi204,Mnda" nonsynonymous SNV uc007drw.1:c.C365A:p.T122N exonic ENSMUSG00000026536 nonsynonymous SNV ENSMUST00000009340:c.C365A:p.T122N 1qH3 "Score=0.962806;Name=No.506,chr1:175682831" NA chr1 175836360 GAAxTCT G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 467 48 91 24.174772 0.088608 0.02 3.276806 144 14 4045 380 60 36 0 0 GG 60.158321 200 0 5612 0 KEEP - Mnda NO Spont_4 chr1 176067191 176067191 T C exonic Olfr424 synonymous SNV NM_146721:c.T315C:p.H105H exonic Olfr424 synonymous SNV uc007dst.1:c.T315C:p.H105H exonic ENSMUSG00000051528 synonymous SNV ENSMUST00000053941:c.T315C:p.H105H 1qH3 NA NA chr1 176067191 CCAxTCA T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 170 0 0 124.680546 0.52809 0.02 1.004385 42 47 1146 1290 60 60 0 0 TT 21.951036 73 0 1957 0 KEEP + Olfr424 NO Spont_4 chr1 192882753 192882753 G A exonic Tatdn3 nonsynonymous SNV NM_001163421:c.C202T:p.P68S exonic Tatdn3 nonsynonymous SNV uc007eby.2:c.C202T:p.P68S exonic ENSMUSG00000026632 nonsynonymous SNV ENSMUST00000027945:c.C202T:p.P68S 1qH6 NA NA chr1 192882753 CTGxGTG G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999998 71 0 0 32.806865 0.48 0.02 -0.219237 13 12 366 346 60 60 0 0 GG 9.926461 33 0 927 0 KEEP - Tatdn3 NO Spont_4 chr1 192988403 192988403 T G UTR5 Fam71a NA NA UTR5 Fam71a NA NA UTR5 ENSMUSG00000091017 NA NA 1qH6 NA NA chr1 192988403 TGCxCCT T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 235 0 0 95.144079 0.388889 0.02 2.542337 66 42 1899 1065 60 60 0 0 TT 29.168158 97 0 2667 0 KEEP - Fam71a NO Spont_4 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 48 0 0 18.351126 0.411765 0.02 -0.148667 10 7 269 200 60 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO Spont_4 chr1 25883055 25883055 C A exonic Bai3 nonsynonymous SNV NM_175642:c.G551T:p.G184V exonic Bai3 nonsynonymous SNV uc007amw.2:c.G551T:p.G184V exonic ENSMUSG00000033569 nonsynonymous SNV ENSMUST00000041838:c.G551T:p.G184V 1qA5 NA NA chr1 25883055 CTCxCAT C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 145 0 0 9.147066 0.096154 0.02 1.239466 47 5 1315 139 60 60 0 0 CC 21.647177 72 0 1986 0 KEEP - Bai3 NO Spont_4 chr1 33895574 33895574 G C UTR5 Gm15455 NA NA UTR5 Gm15455 NA NA ncRNA_exonic ENSMUSG00000081402 NA NA 1qB "Score=0.96585;Name=No.1914,chr4:101718929" NA chr1 33895574 CTGxCTC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582867 0.58293 0.999892 56 0 0 28.379133 0.423077 0.02 -0.227259 15 11 400 308 60 60 0 0 GG 6.89587 23 0 605 0 KEEP - Gm15455 YES Spont_4 chr1 72722309 72722309 T G exonic Ankar nonsynonymous SNV NM_176980:c.A1883C:p.N628T exonic Ankar nonsynonymous SNV uc007bku.2:c.A1229C:p.N410T exonic ENSMUSG00000039342 nonsynonymous SNV ENSMUST00000053499:c.A1883C:p.N628T 1qC3 NA NA chr1 72722309 ATGxTAT T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260929 0.260965 0.999863 42 0 0 18.776946 0.4375 0.02 -0.140317 9 7 256 202 60 60 0 0 TT 5.989095 20 0 530 0 KEEP - Ankar NO Spont_4 chr1 75209500 75209500 G C exonic Stk16 synonymous SNV NM_001277992:c.G480C:p.G160G exonic Stk16 synonymous SNV uc007boh.2:c.G480C:p.G160G exonic ENSMUSG00000026201 synonymous SNV ENSMUST00000027401:c.G480C:p.G160G 1qC3 NA NA chr1 75209500 GGGxCAG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693638 0.693668 0.999957 63 0 0 25.057767 0.344828 0.02 -0.262356 19 10 543 284 60 60 0 0 GG 7.820805 26 0 729 0 KEEP + Stk16 YES Spont_4 chr1 82494405 82494405 G C exonic Col4a4 nonsynonymous SNV NM_007735:c.C1777G:p.R593G exonic Col4a4 nonsynonymous SNV uc007brt.1:c.C1777G:p.R593G exonic ENSMUSG00000067158 nonsynonymous SNV ENSMUST00000087050:c.C1777G:p.R593G 1qC5 NA NA chr1 82494405 CTCxTGG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 533 6 0 11.07848 0.040936 0.02 3.874051 164 7 3943 204 60 60 0 0 GG 82.873744 276 0 6629 0 KEEP - Col4a4 YES Spont_4 chr1 87433013 87433013 T G intergenic "NONE(dist=NONE),Sp110(dist=40462)" NA NA intronic Csprs NA NA ncRNA_intronic ENSMUSG00000090186 NA NA 1qC5 "Score=0.987327;Name=No.292,chr1:85009334" NA chr1 87433013 AAAxTTA T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 131 0 21 6.777112 0.085106 0.02 -0.412151 43 4 1209 108 54 32 0 0 TT 16.542095 55 0 1515 0 KEEP + NONE NO Spont_4 chr1 88247526 88247526 T C exonic Ncl synonymous SNV NM_010880:c.A1908G:p.K636K exonic Ncl synonymous SNV uc007bvl.1:c.A1908G:p.K636K exonic ENSMUSG00000026234 synonymous SNV ENSMUST00000027438:c.A1908G:p.K636K 1qD NA NA chr1 88247526 AACxTTG T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 0.999999 81 0 0 6.550936 0.102564 0.02 -0.341874 35 4 1006 102 60 23 0 0 TT 10.828608 36 0 1007 0 KEEP - Ncl NO Spont_4 chr1 88247535 88247535 G A exonic Ncl synonymous SNV NM_010880:c.C1899T:p.D633D exonic Ncl synonymous SNV uc007bvl.1:c.C1899T:p.D633D exonic ENSMUSG00000026234 synonymous SNV ENSMUST00000027438:c.C1899T:p.D633D 1qD NA NA chr1 88247535 TCCxTCA G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 82 0 0 7.138351 0.093023 0.02 -0.376806 39 4 965 110 60 23 0 0 GG 9.910082 33 0 790 0 KEEP - Ncl NO Spont_4 chr1 89051344 89051344 G C exonic Ecel1 nonsynonymous SNV NM_001277925:c.C221G:p.A74G exonic Ecel1 nonsynonymous SNV uc007bwc.1:c.C221G:p.A74G exonic ENSMUSG00000026247 nonsynonymous SNV ENSMUST00000027463:c.C221G:p.A74G 1qD NA NA chr1 89051344 ATGxCGC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973963 0.973965 0.999998 95 0 0 39.295585 0.307692 0.02 1.328753 36 16 1031 456 60 60 0 0 GG 10.159091 34 0 911 0 KEEP - Ecel1 YES Spont_4 chr2 104554481 104554481 G C exonic Pin1rt1 nonsynonymous SNV NM_001033768:c.C462G:p.I154M exonic Pin1-ps1 nonsynonymous SNV uc008lkd.1:c.C462G:p.I154M ncRNA_exonic ENSMUSG00000074997 NA NA 2qE2 NA NA chr2 104554481 GATxATA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 207 0 0 17.75662 0.078125 0.02 2.464754 118 10 3392 282 60 60 0 0 GG 14.731062 49 0 1376 0 KEEP - Pin1rt1 YES Spont_4 chr2 105532925 105532925 C G exonic Pax6 synonymous SNV NM_001244201:c.C948G:p.G316G exonic Pax6 synonymous SNV uc008llc.1:c.C540G:p.G180G exonic ENSMUSG00000027168 synonymous SNV ENSMUST00000173007:c.C345G:p.G115G 2qE3 NA NA chr2 105532925 GGGxCGA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 215 0 0 13.920409 0.073394 0.02 2.532961 101 8 2857 225 60 60 0 0 CC 22.553866 75 0 2063 0 KEEP + Pax6 YES Spont_4 chr2 111290025 111290025 C A exonic Olfr1287 nonsynonymous SNV NM_001011773:c.C727A:p.H243N exonic Olfr1287 nonsynonymous SNV uc008lnn.1:c.C727A:p.H243N exonic ENSMUSG00000063377 nonsynonymous SNV ENSMUST00000075390:c.C727A:p.H243N 2qE3 "Score=0.946331;Name=No.75321,chr2:111205518" NA chr2 111290025 TCCxATA C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 513 3 0 19.146036 0.053571 0.02 4.620941 212 12 6089 337 60 60 0 0 CC 67.962859 226 0 6387 0 KEEP + Olfr1287 NO Spont_4 chr2 11167030 11167030 A C exonic Prkcq nonsynonymous SNV NM_008859:c.A530C:p.H177P exonic Prkcq nonsynonymous SNV uc008iia.1:c.A530C:p.H177P exonic ENSMUSG00000026778 nonsynonymous SNV ENSMUST00000028118:c.A530C:p.H177P 2qA1 NA NA chr2 11167030 GCCxTGA A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 368 0 0 14.280828 0.050847 0.02 3.730513 168 9 4601 254 60 60 0 0 AA 37.282283 124 0 3341 0 KEEP + Prkcq NO Spont_4 chr2 112549442 112549442 T G exonic Ryr3 nonsynonymous SNV NM_177652:c.A9669C:p.K3223N exonic Ryr3 nonsynonymous SNV uc008lpg.1:c.A9669C:p.K3223N exonic ENSMUSG00000057378 nonsynonymous SNV ENSMUST00000080673:c.A9609C:p.K3203N 2qE3 NA NA chr2 112549442 GGCxTTG T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.64127 0.641347 0.999879 56 0 0 14.503106 0.25 0.02 -0.245513 21 7 602 180 60 60 0 0 TT 6.617429 22 0 615 0 KEEP - Ryr3 NO Spont_4 chr2 118742241 118742241 C G exonic Bahd1 nonsynonymous SNV NM_001045523:c.C604G:p.L202V exonic Bahd1 nonsynonymous SNV uc012cbm.1:c.C604G:p.L202V exonic ENSMUSG00000040007 nonsynonymous SNV ENSMUST00000036578:c.C604G:p.L202V 2qE5 NA NA chr2 118742241 AGAxTGG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 74 0 0 48.572263 0.529412 0.02 -0.298136 16 18 452 502 60 60 0 0 CC 9.623434 32 0 882 0 KEEP + Bahd1 YES Spont_4 chr2 120527793 120527793 C G intergenic "Haus2(dist=81239),Cdan1(dist=14097)" NA NA upstream mKIAA1300 NA NA exonic ENSMUSG00000033705 nonsynonymous SNV ENSMUST00000140843:c.C7540G:p.P2514A 2qE5 NA NA chr2 120527793 GTAxCAT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 119 0 0 11.211684 0.096774 0.02 1.151535 56 6 1575 169 60 60 0 0 CC 12.597894 42 0 1141 0 KEEP NA Haus2 YES Spont_4 chr2 120803483 120803483 G C exonic Tmem62 nonsynonymous SNV NM_175285:c.G229C:p.A77P exonic Tmem62 nonsynonymous SNV uc008lxe.1:c.G229C:p.A77P exonic ENSMUSG00000054484 nonsynonymous SNV ENSMUST00000067582:c.G229C:p.A77P 2qE5 NA NA chr2 120803483 CTGxCCT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 95 0 0 41.221209 0.380952 0.02 -0.367998 26 16 720 457 60 60 0 0 GG 12.328048 41 0 1118 0 KEEP + Tmem62 YES Spont_4 chr2 153714854 153714854 A T exonic Bpifb2 nonsynonymous SNV NM_025631:c.A608T:p.E203V exonic Bpil1 nonsynonymous SNV uc008nin.2:c.A608T:p.E203V exonic ENSMUSG00000027481 nonsynonymous SNV ENSMUST00000028983:c.A608T:p.E203V 2qH1 NA NA chr2 153714854 CTGxGTC A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 242 0 0 148.077466 0.491379 0.02 2.373873 59 57 1660 1558 60 60 0 0 AA 28.514062 95 0 2607 0 KEEP + Bpifb2 NO Spont_4 chr2 154093938 154093938 A C intronic Bpifb9a NA NA intronic 4833413D08Rik NA NA intronic ENSMUSG00000067998 NA NA 2qH1 "Score=0.978307;Name=No.75414,chr2:154129632" NA chr2 154093938 GTAxGTT A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 275 3 5 23.660272 0.114504 0.02 2.135126 116 15 3294 367 60 60 0 0 AA 27.07188 90 0 2528 0 KEEP + Bpifb9a NO Spont_4 chr2 174254174 174254174 C G exonic Ctsz nonsynonymous SNV NM_022325:c.G715C:p.A239P exonic Ctsz nonsynonymous SNV uc008ofd.1:c.G715C:p.A239P exonic ENSMUSG00000016256 nonsynonymous SNV ENSMUST00000016400:c.G715C:p.A239P 2qH4 NA NA chr2 174254174 CGGxCTG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 170 0 0 8.636804 0.064103 0.02 1.110632 73 5 2030 143 60 60 0 0 CC 19.250103 64 0 1778 0 KEEP - Ctsz YES Spont_4 chr2 179792447 179792447 C A exonic Ss18l1 synonymous SNV NM_178750:c.C732A:p.S244S exonic Ss18l1 synonymous SNV uc008oic.2:c.C732A:p.S244S exonic ENSMUSG00000039086 synonymous SNV ENSMUST00000041126:c.C732A:p.S244S 2qH4 NA NA chr2 179792447 CTCxCAG C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 134 0 0 10.72156 0.086957 0.02 0.992258 63 6 1799 167 60 60 0 0 CC 12.93305 43 0 1192 0 KEEP + Ss18l1 NO Spont_4 chr2 21748901 21748901 A G exonic Gpr158 nonsynonymous SNV NM_001004761:c.A3184G:p.K1062E exonic Gpr158 nonsynonymous SNV uc008inf.1:c.A3184G:p.K1062E exonic ENSMUSG00000045967 nonsynonymous SNV ENSMUST00000055946:c.A3184G:p.K1062E 2qA3 NA NA chr2 21748901 GACxAGA A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 97 0 0 48.568111 0.395833 0.02 -0.420913 29 19 819 535 60 60 0 0 AA 12.031041 40 0 1104 0 KEEP + Gpr158 NO Spont_4 chr2 28306421 28306421 G C exonic Ppp1r26 nonsynonymous SNV NM_001005420:c.G542C:p.S181T exonic Gm347 nonsynonymous SNV uc008iye.1:c.G542C:p.S181T exonic ENSMUSG00000035829 nonsynonymous SNV ENSMUST00000040324:c.G542C:p.S181T 2qA3 NA NA chr2 28306421 GTAxTGT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 146 0 0 114.649343 0.506024 0.02 1.065724 41 42 1131 1196 60 60 0 0 GG 12.906664 43 0 1140 0 KEEP + Ppp1r26 YES Spont_4 chr2 30328444 30328444 C G exonic Ier5l nonsynonymous SNV NM_030244:c.G1088C:p.G363A exonic Ier5l nonsynonymous SNV uc008jco.1:c.G1088C:p.G363A exonic ENSMUSG00000089762 nonsynonymous SNV ENSMUST00000065134:c.G1088C:p.G363A 2qB NA NA chr2 30328444 GAGxCAA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 264 1 0 165.714422 0.45 0.02 2.458392 77 63 2142 1775 60 60 0 0 CC 26.333971 88 0 2319 0 KEEP - Ier5l YES Spont_4 chr2 34661298 34661298 C G exonic Fbxw2 nonsynonymous SNV NM_001164768:c.G1298C:p.G433A exonic Fbxw2 nonsynonymous SNV uc008jix.2:c.G1298C:p.G433A exonic ENSMUSG00000035949 nonsynonymous SNV ENSMUST00000113077:c.G1103C:p.G368A 2qB NA NA chr2 34661298 AAGxCCG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990857 0.990964 0.999892 104 0 0 69.534974 0.435484 0.02 1.249906 35 27 985 751 60 60 0 0 CC 6.917128 23 0 632 0 KEEP + Fbxw2 YES Spont_4 chr2 34762529 34762529 G C exonic Phf19 synonymous SNV NM_028716:c.C354G:p.G118G exonic Phf19 synonymous SNV uc008jji.1:c.C54G:p.G18G exonic ENSMUSG00000026873 synonymous SNV ENSMUST00000028232:c.C354G:p.G118G 2qB NA NA chr2 34762529 CAGxCCA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 162 0 0 8.849394 0.067568 0.02 1.144581 69 5 1982 144 60 60 0 0 GG 17.379666 58 0 1572 0 KEEP - Phf19 YES Spont_4 chr2 35582989 35582989 A C exonic Dab2ip nonsynonymous SNV NM_001001602:c.A3163C:p.M1055L exonic Dab2ip nonsynonymous SNV uc008jkv.2:c.A2227C:p.M743L exonic ENSMUSG00000026883 nonsynonymous SNV ENSMUST00000028246:c.A2779C:p.M927L 2qB NA NA chr2 35582989 GAGxTGC A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926556 0.92664 0.999909 83 0 0 9.974503 0.111111 0.02 -0.39459 40 5 1110 144 60 60 0 0 AA 7.218269 24 0 658 0 KEEP + Dab2ip NO Spont_4 chr2 37646576 37646576 G A intronic Crb2 NA NA intronic Crb2 NA NA intronic ENSMUSG00000035403 NA NA 2qB NA NA chr2 37646576 CTGxCCT G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 154 0 0 73.326794 0.391892 0.02 2.496427 45 29 1258 810 60 60 0 0 GG 13.453638 45 0 1193 0 KEEP + Crb2 NO Spont_4 chr2 38224444 38224444 C G exonic Lhx2 nonsynonymous SNV NM_010710:c.C1016G:p.A339G exonic Lhx2 nonsynonymous SNV uc008jnk.1:c.C893G:p.A298G exonic ENSMUSG00000000247 nonsynonymous SNV ENSMUST00000000253:c.C1016G:p.A339G 2qB NA NA chr2 38224444 ATGxCAC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99755 0.997553 0.999997 110 0 0 112.869191 0.583333 0.02 1.162458 30 42 841 1141 60 60 0 0 CC 8.33496 28 0 702 0 KEEP + Lhx2 YES Spont_4 chr2 4902284 4902284 C T exonic Ucma nonsynonymous SNV NM_026754:c.C155T:p.A52V exonic Ucma nonsynonymous SNV uc008ife.2:c.C155T:p.A52V exonic ENSMUSG00000026668 nonsynonymous SNV ENSMUST00000027978:c.C155T:p.A52V 2qA1 NA NA chr2 4902284 CAGxGGA C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818376 0.818465 0.999892 76 0 0 35.834292 0.388889 0.02 -0.315583 22 14 561 396 60 60 0 0 CC 6.853627 23 0 594 0 KEEP + Ucma NO Spont_4 chr2 68546998 68546998 G C intronic 4932414N04Rik NA NA intronic 4932414N04Rik NA NA intronic ENSMUSG00000048204 NA NA 2qC2 NA NA chr2 68546998 TGTxAGT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970819 0.97082 0.999999 108 0 0 72.346841 0.5 0.02 1.328708 26 26 759 756 60 60 0 0 GG 10.52904 35 0 1006 0 KEEP + 4932414N04Rik YES Spont_4 chr2 76569331 76569331 T A exonic Ttn stopgain SNV NM_028004:c.A61906T:p.R20636X exonic Ttn stopgain SNV uc008kfo.1:c.A61906T:p.R20636X exonic ENSMUSG00000051747 stopgain SNV ENSMUST00000011934:c.A61906T:p.R20636X 2qC3 NA NA chr2 76569331 TTCxTAT T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999938 0.99994 0.999999 144 0 0 12.037835 0.072165 0.02 0.844561 90 7 2583 196 60 60 0 0 TT 10.528338 35 0 988 0 KEEP - Ttn NO Spont_4 chr2 76737950 76737950 A C intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76737950 AGAxTTT A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.519729 0.522161 0.995343 38 0 0 32.299308 0.5 0.02 -0.210435 12 12 323 338 60 60 0 0 AA 4.184197 14 0 360 0 KEEP - Ttn NO Spont_4 chr2 76777376 76777376 T G intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76777376 GAAxTAA T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909006 0.909069 0.999931 75 0 0 78.169598 0.651163 0.02 -0.37706 15 28 425 769 60 60 0 0 TT 7.519569 25 0 694 0 KEEP - Ttn NO Spont_4 chr2 84513353 84513353 A G intronic Tmx2 NA NA intronic Tmx2 NA NA intronic ENSMUSG00000050043 NA NA 2qD "Score=0.990802;Name=No.66549,chr17:87478051" NA chr2 84513353 TACxTCA A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 267 0 0 17.769936 0.08125 0.02 3.187341 147 13 3996 309 60 60 0 0 AA 25.193451 89 1 2392 14 KEEP - Tmx2 NO Spont_4 chr2 84864283 84864283 C G exonic P2rx3 nonsynonymous SNV NM_145526:c.G375C:p.E125D exonic P2rx3 nonsynonymous SNV uc008kjr.1:c.G375C:p.E125D exonic ENSMUSG00000027071 nonsynonymous SNV ENSMUST00000111616:c.G303C:p.E101D 2qD NA NA chr2 84864283 GCGxTCA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 338 0 0 224.446449 0.491429 0.02 3.947576 89 86 2524 2363 60 60 0 0 CC 33.05418 110 0 3037 0 KEEP - P2rx3 YES Spont_4 chr2 86173387 86173387 T G exonic Olfr1054 nonsynonymous SNV NM_147019:c.A125C:p.N42T exonic Olfr1054 nonsynonymous SNV uc008kmc.1:c.A125C:p.N42T exonic ENSMUSG00000075190 nonsynonymous SNV ENSMUST00000099895:c.A125C:p.N42T 2qD NA NA chr2 86173387 ATGxTGC T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 180 0 0 11.961931 0.082353 0.02 1.048168 78 7 2189 191 60 60 0 0 TT 20.451975 68 0 1868 0 KEEP - Olfr1054 NO Spont_4 chr2 88895022 88895022 G C exonic Olfr1218 nonsynonymous SNV NM_146818:c.C560G:p.A187G exonic Olfr1218 nonsynonymous SNV uc008kqv.1:c.C560G:p.A187G exonic ENSMUSG00000075105 nonsynonymous SNV ENSMUST00000099798:c.C560G:p.A187G 2qE1 NA NA chr2 88895022 CAGxCCA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 219 0 0 9.005427 0.054545 0.02 2.426442 104 6 2878 162 60 60 0 0 GG 27.304506 91 0 2484 0 KEEP - Olfr1218 YES Spont_4 chr2 90844974 90844974 G A exonic Celf1 stopgain SNV NM_001244903:c.G642A:p.W214X exonic Celf1 stopgain SNV uc008ktx.1:c.G642A:p.W214X exonic ENSMUSG00000005506 stopgain SNV ENSMUST00000111448:c.G642A:p.W214X 2qE1 NA NA chr2 90844974 GTGxGGA G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 187 0 0 38.545429 0.2 0.02 1.04809 68 17 1964 489 60 60 0 0 GG 22.860448 76 0 2133 0 KEEP + Celf1 NO Spont_4 chr2 90975257 90975257 C G exonic Mybpc3 unknown UNKNOWN exonic Mybpc3 nonsynonymous SNV uc008kul.1:c.C3336G:p.F1112L exonic ENSMUSG00000002100 nonsynonymous SNV ENSMUST00000028718:c.C3351G:p.F1117L 2qE1 NA NA chr2 90975257 GTTxACG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 194 0 0 130.720677 0.5 0.02 0.969188 47 47 1348 1366 60 60 0 0 CC 21.340796 71 0 2001 0 KEEP + Mybpc3 YES Spont_4 chr2 93688247 93688247 G A exonic Accs nonsynonymous SNV NM_183220:c.C49T:p.P17S exonic Accs nonsynonymous SNV uc008lgj.1:c.C49T:p.P17S exonic ENSMUSG00000040272 nonsynonymous SNV ENSMUST00000041593:c.C49T:p.P17S 2qE1 NA NA chr2 93688247 CTGxTTT G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 190 1 0 14.769424 0.087379 0.02 2.487303 94 9 2626 237 60 60 0 0 GG 17.744954 59 0 1628 0 KEEP - Accs NO Spont_4 chr2 94101571 94101571 A G upstream Mir670 NA NA ncRNA_intronic "AK089118,AK140370" NA NA ncRNA_intronic ENSMUSG00000075020 NA NA 2qE1 NA NA chr2 94101571 TCCxGAA A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 219 1 0 136.045691 0.482143 0.02 2.6051 58 54 1664 1440 60 60 0 0 AA 24.062512 80 0 2222 0 KEEP - Mir670 NO Spont_4 chr3 106900815 106900815 A T intergenic "AI504432(dist=43575),Kcna2(dist=3670)" NA NA ncRNA_exonic AK080695 NA NA UTR3 ENSMUSG00000050179 NA NA 3qF2.3 NA NA chr3 106900815 TTAxGTT A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 78 0 0 9.58139 0.116279 0.02 -0.376826 38 5 1064 139 60 60 0 0 AA 8.72271 29 0 806 0 KEEP + AI504432 NO Spont_4 chr3 122227923 122227923 C G exonic Bcar3 nonsynonymous SNV NM_013867:c.C2041G:p.P681A exonic Bcar3 nonsynonymous SNV uc008req.2:c.C2041G:p.P681A exonic ENSMUSG00000028121 nonsynonymous SNV ENSMUST00000029766:c.C2041G:p.P681A 3qG1 NA NA chr3 122227923 AAGxCCT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 59 1 0 19.855107 0.363636 0.02 -0.192858 14 8 392 223 60 60 0 0 CC 8.719385 29 0 796 0 KEEP + Bcar3 YES Spont_4 chr3 133150263 133150263 T G exonic Tet2 nonsynonymous SNV NM_001040400:c.A1373C:p.H458P exonic Tet2 nonsynonymous SNV uc012cxy.1:c.A1373C:p.H458P exonic ENSMUSG00000040943 nonsynonymous SNV ENSMUST00000041994:c.A1373C:p.H458P 3qG3 NA NA chr3 133150263 TGAxGCT T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 117 0 0 10.561683 0.098361 0.02 1.258654 55 6 1521 162 60 60 0 0 TT 13.187564 44 0 1138 0 KEEP - Tet2 NO Spont_4 chr3 145239485 145239485 G C exonic Znhit6 nonsynonymous SNV NM_001081094:c.G154C:p.A52P exonic Znhit6 nonsynonymous SNV uc008rqo.1:c.G154C:p.A52P exonic ENSMUSG00000074182 nonsynonymous SNV ENSMUST00000098534:c.G154C:p.A52P 3qH2 NA NA chr3 145239485 CTGxCAG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 113 2 0 80.53842 0.537037 0.02 1.319974 25 29 711 829 60 60 0 0 GG 13.525377 45 0 1226 0 KEEP + Znhit6 YES Spont_4 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 63 1 0 8.025203 0.142857 0.02 -0.254308 24 4 681 111 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO Spont_4 chr3 52820947 52820947 C G intronic Cog6 NA NA intronic Cog6 NA NA intronic ENSMUSG00000027742 NA NA 3qC NA NA chr3 52820947 GTCxGCC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 202 0 0 70.045826 0.327273 0.02 2.516628 74 36 1981 831 60 60 0 0 CC 18.907857 63 0 1620 0 KEEP - Cog6 YES Spont_4 chr3 54519469 54519469 A G exonic Supt20 synonymous SNV NM_019995:c.A1440G:p.T480T exonic Fam48a synonymous SNV uc008pfl.1:c.A1440G:p.T480T exonic ENSMUSG00000027751 synonymous SNV ENSMUST00000029315:c.A1437G:p.T479T 3qC NA NA chr3 54519469 CACxGCA A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 319 4 0 141.619489 0.574074 0.02 2.543505 46 62 1282 1442 60 60 0 0 AA 48.118227 160 0 4392 0 KEEP + Supt20 NO Spont_4 chr3 89070663 89070663 A T exonic Dpm3 nonsynonymous SNV NM_026767:c.A8T:p.K3M exonic Dpm3 nonsynonymous SNV uc008pym.1:c.A8T:p.K3M exonic ENSMUSG00000042737 nonsynonymous SNV ENSMUST00000040824:c.A8T:p.K3M 3qF1 NA NA chr3 89070663 CGAxGTT A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 273 4 0 165.457672 0.590476 0.02 2.470183 43 62 1213 1668 60 60 0 0 AA 36.088495 120 0 3298 0 KEEP + Dpm3 NO Spont_4 chr3 94284259 94284259 A C exonic Celf3 nonsynonymous SNV NM_172434:c.A215C:p.K72T exonic Celf3 nonsynonymous SNV uc008qgn.1:c.A215C:p.K72T exonic ENSMUSG00000028137 nonsynonymous SNV ENSMUST00000029784:c.A215C:p.K72T 3qF2.1 NA NA chr3 94284259 AGAxGAC A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 158 0 0 92.007215 0.573529 0.02 1.055416 29 39 829 936 70 60 0 0 AA 20.71306 69 0 1879 0 KEEP + Celf3 NO Spont_4 chr4 109114898 109114898 C G exonic Ttc39a nonsynonymous SNV NM_001145948:c.C1336G:p.L446V exonic Ttc39a nonsynonymous SNV uc008ucj.2:c.C1330G:p.L444V exonic ENSMUSG00000028555 nonsynonymous SNV ENSMUST00000064129:c.C1330G:p.L444V 4qC7 NA NA chr4 109114898 ATGxTGG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 382 0 0 103.715019 0.307143 0.02 2.547838 97 43 2809 1207 60 60 0 0 CC 51.099125 170 0 4792 0 KEEP + Ttc39a YES Spont_4 chr4 117549542 117549542 C G exonic B4galt2 nonsynonymous SNV NM_001253381:c.G902C:p.G301A exonic B4galt2 nonsynonymous SNV uc008ujb.1:c.G902C:p.G301A exonic ENSMUSG00000028541 nonsynonymous SNV ENSMUST00000084325:c.G902C:p.G301A 4qD2.1 NA NA chr4 117549542 CGGxCAA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 388 0 0 267.48594 0.612903 0.02 4.022677 60 95 1703 2672 60 60 0 0 CC 49.188539 164 0 4453 0 KEEP - B4galt2 YES Spont_4 chr4 117563703 117563703 C G exonic Dph2 nonsynonymous SNV NM_026344:c.G281C:p.G94A exonic Dph2 nonsynonymous SNV uc008ujd.1:c.G281C:p.G94A exonic ENSMUSG00000028540 nonsynonymous SNV ENSMUST00000030265:c.G281C:p.G94A 4qD2.1 NA NA chr4 117563703 GCGxCCA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 109 1 0 95.297946 0.57377 0.02 1.259941 26 35 750 968 60 60 0 0 CC 10.826691 36 0 988 0 KEEP - Dph2 YES Spont_4 chr4 118641039 118641039 G T exonic Lao1 nonsynonymous SNV NM_133892:c.G1450T:p.G484W exonic Lao1 nonsynonymous SNV uc008uld.2:c.G1450T:p.G484W exonic ENSMUSG00000024903 nonsynonymous SNV ENSMUST00000058651:c.G1450T:p.G484W 4qD2.1 NA NA chr4 118641039 GCTxGGG G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 163 0 0 14.745958 0.097561 0.02 0.9761 74 8 2133 223 60 60 0 0 GG 18.9503 63 0 1773 0 KEEP + Lao1 NO Spont_4 chr4 122537472 122537472 A G intronic Cap1 NA NA intronic Cap1 NA NA intronic ENSMUSG00000028656 NA NA 4qD2.2 NA NA chr4 122537472 AGGxAGT A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.904836 0.909069 0.995343 61 0 0 74.466562 0.604651 0.02 -0.377096 17 26 481 746 60 60 0 0 AA 4.210711 14 0 385 0 KEEP - Cap1 NO Spont_4 chr4 124392096 124392096 G C upstream Sf3a3 NA NA upstream Sf3a3 NA NA UTR5 ENSMUSG00000028902 NA NA 4qD2.2 NA NA chr4 124392096 CCGxCAG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.19488 0.196312 0.992708 28 0 0 28.427053 0.714286 0.02 -0.122755 4 10 117 273 60 60 0 0 GG 3.00174 10 0 255 0 KEEP NA Sf3a3 YES Spont_4 chr4 125919041 125919041 C T exonic Map7d1 synonymous SNV NM_001145970:c.G450A:p.E150E exonic Mtap7d1 synonymous SNV uc008usz.2:c.G450A:p.E150E exonic ENSMUSG00000028849 synonymous SNV ENSMUST00000061143:c.G450A:p.E150E 4qD2.2 NA NA chr4 125919041 CCGxTCT C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 238 3 0 8.190499 0.054945 0.02 0.897186 86 5 2468 142 60 60 0 0 CC 30.374582 101 0 2812 0 KEEP - Map7d1 NO Spont_4 chr4 128199073 128199073 T G intronic Csmd2 NA NA intronic Csmd2 NA NA intronic ENSMUSG00000028804 NA NA 4qD2.2 NA NA chr4 128199073 TATxGAA T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.259018 0.260965 0.99254 28 0 0 28.569731 0.625 0.02 -0.140301 6 10 171 284 60 60 0 0 TT 2.706886 9 0 248 0 KEEP + Csmd2 NO Spont_4 chr4 129396322 129396322 C G intronic Khdrbs1 NA NA intronic Khdrbs1 NA NA intronic ENSMUSG00000028790 NA NA 4qD2.2 NA NA chr4 129396322 AAAxGCA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 184 0 0 97.431502 0.5 0.02 1.179837 35 35 897 1018 60 60 0 0 CC 24.046342 80 0 2055 0 KEEP - Khdrbs1 YES Spont_4 chr4 132091532 132091532 G A exonic Dnajc8 nonsynonymous SNV NM_172400:c.G32A:p.G11D exonic Dnajc8 nonsynonymous SNV uc012dmi.1:c.G32A:p.G11D exonic ENSMUSG00000054405 nonsynonymous SNV ENSMUST00000067467:c.G32A:p.G11D 4qD2.3 NA NA chr4 132091532 CGGxTGG G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73964 0.739671 0.999957 73 0 0 8.035931 0.129032 0.02 -0.271807 27 4 743 113 60 60 0 0 GG 7.820013 26 0 716 0 KEEP + Dnajc8 NO Spont_4 chr4 132389026 132389026 C G exonic Ppp1r8 nonsynonymous SNV NM_146154:c.G278C:p.G93A exonic Ppp1r8 nonsynonymous SNV uc008vbw.2:c.G278C:p.G93A exonic ENSMUSG00000028882 nonsynonymous SNV ENSMUST00000030702:c.G278C:p.G93A 4qD2.3 NA NA chr4 132389026 GTGxCAT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 115 0 0 81.656498 0.58 0.02 -0.43848 21 29 600 826 60 60 0 0 CC 15.9222 53 0 1467 0 KEEP - Ppp1r8 YES Spont_4 chr4 136231349 136231349 G A exonic Ephb2 nonsynonymous SNV NM_010142:c.C1525T:p.R509W exonic Ephb2 nonsynonymous SNV uc008vim.1:c.C1525T:p.R509W exonic ENSMUSG00000028664 nonsynonymous SNV ENSMUST00000059287:c.C1528T:p.R510W 4qD3 NA NA chr4 136231349 CCCxCAC G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 159 0 0 113.925978 0.531646 0.02 1.002662 37 42 946 1176 60 60 0 0 GG 16.051742 63 1 1553 27 KEEP - Ephb2 NO Spont_4 chr4 138577629 138577629 C G exonic Tmco4 nonsynonymous SNV NM_029857:c.C962G:p.A321G exonic Tmco4 nonsynonymous SNV uc008vlq.1:c.C206G:p.A69G exonic ENSMUSG00000041143 nonsynonymous SNV ENSMUST00000043042:c.C962G:p.A321G 4qD3 NA NA chr4 138577629 ATGxCCT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.580884 0.58293 0.99649 43 0 0 38.582943 0.538462 0.02 -0.228008 12 14 342 397 60 60 0 0 CC 4.512168 15 0 424 0 KEEP + Tmco4 YES Spont_4 chr4 143440819 143440819 C A exonic Gm13103 nonsynonymous SNV NM_177571:c.C267A:p.D89E exonic Gm13103 nonsynonymous SNV uc008vqo.1:c.C267A:p.D89E exonic ENSMUSG00000029451 nonsynonymous SNV ENSMUST00000094522:c.C267A:p.D89E 4qE1 "Score=0.967016;Name=No.86436,chr4:143243188" NA chr4 143440819 AGAxAAC C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 106 0 0 19.817187 0.204545 0.02 -0.385804 35 9 968 252 60 60 0 0 CC 14.739895 49 0 1396 0 KEEP + Gm13103 NO Spont_4 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582561 0.58293 0.999366 51 0 0 33.571 0.5 0.02 -0.227992 13 13 373 352 60 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 NO Spont_4 chr4 148303172 148303172 G C exonic Casz1 nonsynonymous SNV NM_001159344:c.G83C:p.G28A exonic Casz1 nonsynonymous SNV uc008vvl.1:c.G83C:p.G28A exonic ENSMUSG00000028977 nonsynonymous SNV ENSMUST00000060495:c.G83C:p.G28A 4qE2 NA NA chr4 148303172 GCGxCCT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 140 0 0 13.174354 0.1 0.02 1.082443 63 7 1726 197 60 60 0 0 GG 17.432035 58 0 1573 0 KEEP + Casz1 YES Spont_4 chr4 151653316 151653316 G C exonic Gpr153 nonsynonymous SNV NM_178406:c.G83C:p.G28A exonic Gpr153 nonsynonymous SNV uc008wab.1:c.G83C:p.G28A exonic ENSMUSG00000042804 nonsynonymous SNV ENSMUST00000055754:c.G83C:p.G28A 4qE2 NA NA chr4 151653316 GGGxCAT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979514 0.979526 0.999988 89 0 0 92.267028 0.589286 0.02 1.302498 23 33 640 930 60 60 0 0 GG 8.099027 27 0 716 0 KEEP + Gpr153 YES Spont_4 chr4 41070232 41070232 A C intronic Nol6 NA NA intronic Nol6 NA NA intronic ENSMUSG00000028430 NA NA 4qA5 NA NA chr4 41070232 CCAxGTT A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612365 0.612407 0.999931 57 0 0 20.808884 0.346154 0.02 -0.227985 17 9 486 238 60 60 0 0 AA 7.520218 25 0 705 0 KEEP - Nol6 NO Spont_4 chr4 43037497 43037497 C G exonic Pigo nonsynonymous SNV NM_020035:c.G473C:p.G158A exonic Pigo nonsynonymous SNV uc008sov.1:c.G473C:p.G158A exonic ENSMUSG00000028454 nonsynonymous SNV ENSMUST00000098109:c.G473C:p.G158A 4qA5 NA NA chr4 43037497 CTGxCAG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 117 0 0 17.379245 0.145161 0.02 1.250104 53 9 1490 242 60 60 0 0 CC 12.568023 42 0 1116 0 KEEP - Pigo YES Spont_4 chr4 44710470 44710470 G T exonic Pax5 nonsynonymous SNV NM_008782:c.C136A:p.H46N exonic Pax5 nonsynonymous SNV uc008srx.1:c.C136A:p.H46N exonic ENSMUSG00000014030 nonsynonymous SNV ENSMUST00000014174:c.C136A:p.H46N 4qB1 NA NA chr4 44710470 GATxGGC G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 80 0 0 24.340073 0.3125 0.02 -0.280624 22 10 633 282 60 60 0 0 GG 11.431831 38 0 1097 0 KEEP - Pax5 NO Spont_4 chr4 58218719 58218719 G C exonic Svep1 nonsynonymous SNV NM_022814:c.C530G:p.A177G exonic Svep1 nonsynonymous SNV uc008syr.1:c.C530G:p.A177G exonic ENSMUSG00000028369 nonsynonymous SNV ENSMUST00000042850:c.C530G:p.A177G 4qB3 NA NA chr4 58218719 GCGxCTT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 103 0 0 68.357487 0.481481 0.02 1.241149 28 26 793 722 60 60 0 0 GG 11.116723 37 0 1012 0 KEEP - Svep1 YES Spont_4 chr5 111162834 111162834 G C exonic Ep400 synonymous SNV NM_173066:c.C2199G:p.R733R exonic Ep400 synonymous SNV uc008yrh.1:c.C2199G:p.R733R exonic ENSMUSG00000029505 synonymous SNV ENSMUST00000112436:c.C2199G:p.R733R 5qF NA NA chr5 111162834 CGGxCGT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 221 2 0 21.771673 0.102804 0.02 2.648723 96 11 2739 319 60 60 0 0 GG 24.640501 82 0 2205 0 KEEP - Ep400 YES Spont_4 chr5 111185090 111185090 T G exonic Ep400 synonymous SNV NM_029337:c.A661C:p.R221R exonic Ep400 synonymous SNV uc008yrg.1:c.A661C:p.R221R exonic ENSMUSG00000029505 synonymous SNV ENSMUST00000041558:c.A661C:p.R221R 5qF NA NA chr5 111185090 GTCxCCG T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998991 0.998993 0.999998 123 0 0 19.088776 0.141026 0.02 1.011252 67 11 1933 276 60 60 0 0 TT 10.215467 34 0 943 0 KEEP - Ep400 NO Spont_4 chr5 115168346 115168346 G A intronic Tchp NA NA intronic Tchp NA NA intronic ENSMUSG00000002486 NA NA 5qF NA NA chr5 115168346 TGCxTGT G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979438 0.979526 0.999909 88 0 0 8.980714 0.089286 0.02 1.204692 51 5 1220 139 60 60 0 0 GG 7.20689 24 0 565 0 KEEP + Tchp NO Spont_4 chr5 118198827 118198827 G C exonic Ksr2 synonymous SNV NM_001114545:c.G2445C:p.G815G exonic Ksr2 synonymous SNV uc008zfv.2:c.G2418C:p.G806G exonic ENSMUSG00000061578 synonymous SNV ENSMUST00000111949:c.G2445C:p.G815G 5qF NA NA chr5 118198827 TGGxCTC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 538 2 0 19.899724 0.052 0.02 6.472027 237 13 6729 358 60 60 0 0 GG 57.074873 190 0 5217 0 KEEP + Ksr2 YES Spont_4 chr5 125074523 125074523 G C intronic Tctn2 NA NA intronic Tctn2 NA NA intronic ENSMUSG00000029386 NA NA 5qF NA NA chr5 125074523 AAAxAGG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.862707 0.865745 0.99649 56 3 0 32.921592 0.333333 0.02 -0.34203 26 13 752 375 60 60 0 0 GG 4.512549 15 0 432 0 KEEP + Tctn2 YES Spont_4 chr5 125253543 125253543 T C intronic Dnah10 NA NA intronic Dnahc10 NA NA intronic ENSMUSG00000038011 NA NA 5qF NA NA chr5 125253543 GGGxGGG T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 184 0 0 92.221779 0.43 0.02 2.596219 57 43 1569 1015 60 60 0 0 TT 18.343606 61 0 1633 0 KEEP + Dnah10 NO Spont_4 chr5 130731493 130731493 C G UTR5 Tyw1 NA NA UTR5 Tyw1 NA NA UTR5 ENSMUSG00000056310 NA NA 5qG1.3 NA NA chr5 130731493 GCGxCAG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851947 0.851984 0.999957 81 0 0 34.91676 0.368421 0.02 -0.333237 24 14 694 391 60 60 0 0 CC 7.820491 26 0 724 0 KEEP + Tyw1 YES Spont_4 chr5 136537076 136537076 C G exonic Upk3bl nonsynonymous SNV NM_027158:c.C479G:p.A160G exonic 2310043J07Rik nonsynonymous SNV uc008zzr.2:c.C479G:p.A160G exonic ENSMUSG00000006143 nonsynonymous SNV ENSMUST00000122979:c.C185G:p.A62G 5qG2 NA NA chr5 136537076 GTGxCGA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 DBSNP COVERED 0.994422 0.994422 0.999999 142 2 0 61.464579 0.363636 0.02 1.21484 42 24 1191 688 60 60 0 0 CC 14.135295 47 0 1292 0 KEEP + Upk3bl YES Spont_4 chr5 138607262 138607262 T C exonic Mcm7 nonsynonymous SNV NM_008568:c.A1724G:p.E575G exonic Mcm7 nonsynonymous SNV uc009aeu.1:c.A1724G:p.E575G exonic ENSMUSG00000029730 nonsynonymous SNV ENSMUST00000000505:c.A1724G:p.E575G 5qG2 NA NA chr5 138607262 GATxCAG T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 117 9 0 12.0401 0.105263 0.02 1.293691 51 6 1447 175 60 60 0 0 TT 12.331432 41 0 1133 0 KEEP - Mcm7 NO Spont_4 chr5 147337574 147337574 C G intronic Gm3404 NA NA intronic Gm3404 NA NA intronic ENSMUSG00000079091 NA NA 5qG3 "Score=0.959135;Name=No.91065,chr5:147298876" NA chr5 147337574 TTAxTCT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 237 0 0 9.607802 0.061856 0.02 0.737976 91 6 2570 165 60 29 0 0 CC 33.987629 113 0 3161 0 KEEP + Gm3404 YES Spont_4 chr5 30500385 30500385 G C exonic Hadhb nonsynonymous SNV NM_145558:c.G481C:p.V161L exonic Hadhb nonsynonymous SNV uc008wve.1:c.G481C:p.V161L exonic ENSMUSG00000059447 nonsynonymous SNV ENSMUST00000026841:c.G481C:p.V161L 5qB1 NA NA chr5 30500385 GTCxTCG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970819 0.97082 0.999999 114 0 8 34.296072 0.264151 0.02 1.328916 39 14 1006 409 60 60 0 0 GG 12.317818 41 0 1027 0 KEEP + Hadhb YES Spont_4 chr5 35900694 35900694 C G exonic Trmt44 synonymous SNV NM_030208:c.G1923C:p.G641G exonic 2310079F23Rik synonymous SNV uc008xdu.2:c.G1923C:p.G641G exonic ENSMUSG00000029097 synonymous SNV ENSMUST00000030980:c.G1923C:p.G641G 5qB3 NA NA chr5 35900694 GCGxCCA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 99 0 0 17.429419 0.166667 0.02 -0.420936 40 8 1142 230 60 60 0 0 CC 12.329962 41 0 1136 0 KEEP - Trmt44 YES Spont_4 chr5 65841594 65841594 C T UTR3 Smim14 NA NA UTR3 1110003E01Rik NA NA UTR3 ENSMUSG00000037822 NA NA 5qC3.1 NA NA chr5 65841594 AGTxGCT C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 297 4 0 17.124407 0.064935 0.02 3.717948 144 10 3991 284 60 60 0 0 CC 31.564969 105 0 2833 0 KEEP - Smim14 NO Spont_4 chr6 113203689 113203689 A T intronic Mtmr14 NA NA intronic Mtmr14 NA NA intronic ENSMUSG00000030269 NA NA 6qE3 NA NA chr6 113203689 AGAxGTC A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 156 0 0 8.413251 0.069444 0.02 1.063824 67 5 1901 139 60 60 0 0 AA 17.145308 57 0 1595 0 KEEP + Mtmr14 NO Spont_4 chr6 12346628 12346628 A T exonic Thsd7a nonsynonymous SNV NM_001164805:c.T2500A:p.L834I exonic Thsd7a nonsynonymous SNV uc009ayj.2:c.T2500A:p.L834I exonic ENSMUSG00000032625 nonsynonymous SNV ENSMUST00000122369:c.T340A:p.L114I 6qA1 NA NA chr6 12346628 CTAxCTG A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 333 7 0 190.244415 0.486301 0.02 2.280678 75 71 2082 2003 60 60 0 0 AA 36.391228 121 0 3311 0 KEEP - Thsd7a NO Spont_4 chr6 29485762 29485762 C T exonic Irf5 synonymous SNV NM_001252382:c.C801T:p.R267R exonic Irf5 synonymous SNV uc009bdu.1:c.C774T:p.R258R exonic ENSMUSG00000029771 synonymous SNV ENSMUST00000168390:c.C486T:p.R162R 6qA3.3 NA NA chr6 29485762 ACGxGCA C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999994 0.999994 1 214 2 0 101.616997 0.369369 0.02 2.614392 70 41 1821 1138 60 60 0 0 CC 24.025142 80 0 2040 0 KEEP + Irf5 NO Spont_4 chr6 30908630 30908630 G C exonic Klf14 nonsynonymous SNV NM_001135093:c.C68G:p.A23G exonic Klf14 nonsynonymous SNV uc012ejp.1:c.C68G:p.A23G exonic ENSMUSG00000073209 nonsynonymous SNV ENSMUST00000101589:c.C68G:p.A23G 6qA3.3 NA NA chr6 30908630 ACGxCGC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 36 0 0 26.209201 0.6 0.02 -0.131535 6 9 164 263 60 60 0 0 GG 4.810586 16 0 423 0 KEEP - Klf14 YES Spont_4 chr6 30909097 30909097 G C upstream Klf14 NA NA upstream Klf14 NA NA upstream ENSMUSG00000073209 NA NA 6qA3.3 NA NA chr6 30909097 CTGxCCA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739203 0.739671 0.999366 52 1 0 34.114939 0.40625 0.02 -0.2806 19 13 528 373 60 60 0 0 GG 5.112759 17 0 463 0 KEEP NA Klf14 YES Spont_4 chr6 43233157 43233157 T C intronic Arhgef5 NA NA intronic Arhgef5 NA NA intronic ENSMUSG00000033542 NA NA 6qB2.1 NA NA chr6 43233157 CTCxCTT T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522088 0.522161 0.99986 52 0 0 6.30681 0.125 0.02 -0.210491 21 3 616 88 60 60 0 0 TT 5.714719 19 0 528 0 KEEP + Arhgef5 NO Spont_4 chr6 48428732 48428732 T G exonic Sspo nonsynonymous SNV NM_173428:c.T9316G:p.C3106G exonic Sspo nonsynonymous SNV uc009bul.1:c.T3340G:p.C1114G exonic ENSMUSG00000029797 nonsynonymous SNV ENSMUST00000043676:c.T8881G:p.C2961G 6qB2.3 NA NA chr6 48428732 TACxGCC T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 203 2 0 111.632942 0.489362 0.02 0.960868 48 46 1365 1180 60 60 0 0 TT 22.859915 76 0 2118 0 KEEP + Sspo NO Spont_4 chr6 48608798 48608798 T G exonic Gimap8 synonymous SNV NM_212486:c.T1497G:p.S499S exonic "Gimap8,IAN9" nonsynonymous SNV uc012elg.1:c.T1009G:p.C337G exonic ENSMUSG00000064262 synonymous SNV ENSMUST00000167044:c.T1497G:p.S499S 6qB2.3 NA NA chr6 48608798 ATCxGCC T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 97 1 0 55.549795 0.469388 0.02 -0.429549 26 23 732 593 60 60 0 0 TT 12.031032 40 0 1111 0 KEEP + Gimap8 NO Spont_4 chr6 69913569 69913569 T C intergenic "Rprl1(dist=636401),Rpia(dist=802145)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076571 synonymous SNV ENSMUST00000103372:c.A84G:p.P28P 6qC1 NA NA chr6 69913569 GGCxGGA T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865667 0.865745 0.999909 73 2 0 7.912719 0.128205 0.02 -0.341963 34 5 960 120 60 60 0 0 TT 7.218526 24 0 661 0 KEEP + Rprl1 NO Spont_4 chr6 71459875 71459875 C G exonic Rnf103 nonsynonymous SNV NM_009543:c.C1495G:p.L499V exonic Rnf103 nonsynonymous SNV uc009cgv.1:c.C1495G:p.L499V exonic ENSMUSG00000052656 nonsynonymous SNV ENSMUST00000064637:c.C1495G:p.L499V 6qC1 NA NA chr6 71459875 TGGxTTC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999981 0.999981 1 246 0 0 18.397088 0.096154 0.02 2.57784 94 10 2653 279 60 60 0 0 CC 34.264174 114 0 3222 0 KEEP + Rnf103 YES Spont_4 chr6 87531571 87531571 C G exonic Prokr1 nonsynonymous SNV NM_021381:c.G825C:p.R275S exonic Prokr1 nonsynonymous SNV uc009cto.1:c.G825C:p.R275S exonic ENSMUSG00000049409 nonsynonymous SNV ENSMUST00000050887:c.G825C:p.R275S 6qD1 NA NA chr6 87531571 CAGxCTC C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994421 0.994422 0.999999 113 0 0 77.388676 0.46875 0.02 1.214877 34 30 951 823 60 60 0 0 CC 10.463836 35 0 931 0 KEEP - Prokr1 YES Spont_4 chr6 87843917 87843917 C G exonic Copg1 nonsynonymous SNV NM_017477:c.C707G:p.A236G exonic Copg nonsynonymous SNV uc009cug.1:c.C707G:p.A236G exonic ENSMUSG00000030058 nonsynonymous SNV ENSMUST00000113607:c.C707G:p.A236G 6qD1 NA NA chr6 87843917 TGGxCAG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 137 2 0 16.574296 0.115942 0.02 1.18844 61 8 1735 235 60 60 0 0 CC 12.917908 43 0 1174 0 KEEP + Copg1 YES Spont_4 chr7 104497182 104497182 A C UTR3 Kctd21 NA NA UTR3 Kctd21 NA NA UTR3 ENSMUSG00000044952 NA NA 7qE1 NA NA chr7 104497182 GAAxGTT A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 146 1 0 64.980059 0.54 0.02 1.160709 23 27 636 671 60 60 0 0 AA 18.042768 60 0 1678 0 KEEP + Kctd21 NO Spont_4 chr7 109684015 109684015 C A exonic Olfr547 synonymous SNV NM_147079:c.C753A:p.I251I exonic Olfr547 synonymous SNV uc009iru.1:c.C753A:p.I251I exonic ENSMUSG00000073979 synonymous SNV ENSMUST00000098229:c.C753A:p.I251I 7qE3 NA NA chr7 109684015 TATxCTC C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.99986 50 0 0 8.215255 0.166667 0.02 -0.228004 20 4 579 110 60 60 0 0 CC 5.7153 19 0 535 0 KEEP + Olfr547 NO Spont_4 chr7 112010213 112010213 G C exonic Usp17la nonsynonymous SNV NM_007887:c.G1510C:p.E504Q exonic Dub1 nonsynonymous SNV uc009iwz.2:c.G1510C:p.E504Q exonic ENSMUSG00000054568 nonsynonymous SNV ENSMUST00000067695:c.G1510C:p.E504Q 7qE3 "Score=0.925726;Name=No.101555,chr7:110552445" NA chr7 112010213 CAGxAAG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 103 0 0 37.574876 0.319149 0.02 -0.412183 32 15 920 432 60 60 0 0 GG 13.536728 45 0 1277 0 KEEP + Usp17la YES Spont_4 chr7 112124419 112124419 T G exonic Olfr671 nonsynonymous SNV NM_001011755:c.A79C:p.I27L exonic Olfr671 nonsynonymous SNV uc009ixh.1:c.A79C:p.I27L exonic ENSMUSG00000060856 nonsynonymous SNV ENSMUST00000078710:c.A79C:p.I27L 7qE3 NA NA chr7 112124419 AGAxGTG T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 327 0 0 19.103627 0.085271 0.02 2.456302 118 11 3227 301 60 60 0 0 TT 45.406059 151 0 4050 0 KEEP - Olfr671 NO Spont_4 chr7 115302539 115302539 A T exonic Olfr485 nonsynonymous SNV NM_001011810:c.T847A:p.F283I exonic Olfr485 nonsynonymous SNV uc009jca.1:c.T847A:p.F283I ncRNA_exonic ENSMUSG00000070411 NA NA 7qE3 "Score=0.898784;Name=No.101614,chr7:115560636" NA chr7 115302539 AGAxCAC A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 238 0 0 10.570439 0.095238 0.02 1.142766 57 6 1607 163 60 60 0 0 AA 45.079383 150 0 4096 0 KEEP - Olfr485 NO Spont_4 chr7 115708786 115708786 A C exonic Olfr504 stopgain SNV NM_001011858:c.T522G:p.Y174X exonic Olfr504 stopgain SNV uc009jco.1:c.T522G:p.Y174X exonic ENSMUSG00000060105 stopgain SNV ENSMUST00000075595:c.T522G:p.Y174X 7qE3 "Score=0.941164;Name=No.101575,chr7:111782411" NA chr7 115708786 ACAxTAA A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 175 2 1 128.218634 0.560976 0.02 1.07448 36 46 988 1307 60 60 0 0 AA 21.954098 73 0 1993 0 KEEP - Olfr504 NO Spont_4 chr7 118218926 118218926 T A exonic Eif4g2 synonymous SNV NM_001040131:c.A1452T:p.P484P exonic Eif4g2 synonymous SNV uc009jfz.1:c.A1452T:p.P484P exonic ENSMUSG00000005610 synonymous SNV ENSMUST00000106666:c.A1452T:p.P484P 7qF1 NA NA chr7 118218926 TGGxGGA T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 174 0 0 66.031879 0.390625 0.02 1.232279 39 25 1093 727 60 60 0 0 TT 24.054863 80 0 2146 0 KEEP - Eif4g2 NO Spont_4 chr7 120035374 120035374 G C splicing "Tead1(NM_009346:exon11:c.981+1G>C,NM_001166584:exon12:c.1044+1G>C,NM_001166585:exon9:c.969+1G>C)" NA NA splicing "Tead1(uc009jha.2:exon12:c.1044+1G>C,uc009jgx.2:exon11:c.981+1G>C,uc009jgz.2:exon10:c.969+1G>C,uc012fsh.1:exon9:c.969+1G>C)" NA NA splicing "ENSMUSG00000055320(ENSMUST00000084705:exon10:c.969+1G>C,ENSMUST00000069256:exon10:c.981+1G>C,ENSMUST00000164059:exon11:c.1044+1G>C,ENSMUST00000059768:exon12:c.1044+1G>C,ENSMUST00000106638:exon11:c.981+1G>C,ENSMUST00000164363:exon12:c.1044+1G>C,ENSMUST00000170352:exon8:c.906+1G>C,ENSMUST00000165036:exon10:c.981+1G>C,ENSMUST00000171197:exon9:c.807+1G>C,ENSMUST00000168981:exon9:c.918+1G>C)" NA NA 7qF1 NA NA chr7 120035374 GAGxTAA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036637 0.036766 0.99649 22 0 0 15.810518 0.833333 0.02 -0.05262 1 5 27 146 60 60 0 0 GG 4.511609 15 0 414 0 KEEP + Tead1 YES Spont_4 chr7 122633311 122633311 G C exonic Sox6 nonsynonymous SNV NM_001277328:c.C1706G:p.A569G exonic Sox6 nonsynonymous SNV uc009jin.1:c.C1706G:p.A569G exonic ENSMUSG00000051910 nonsynonymous SNV ENSMUST00000169129:c.C1709G:p.A570G 7qF1 NA NA chr7 122633311 CGGxCAT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 114 0 0 60.379522 0.410714 0.02 1.304784 33 23 895 658 60 60 0 0 GG 13.815429 46 0 1217 0 KEEP - Sox6 YES Spont_4 chr7 128081083 128081083 A G intronic Polr3e NA NA intronic Polr3e NA NA intronic ENSMUSG00000030880 NA NA 7qF2 NA NA chr7 128081083 GACxGGG A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 230 2 0 15.7121 0.102804 0.02 2.5506 96 11 2712 258 60 60 0 0 AA 27.669212 92 0 2525 0 KEEP + Polr3e NO Spont_4 chr7 133910084 133910084 G C exonic Gdpd3 nonsynonymous SNV NM_024228:c.G100C:p.A34P exonic Gdpd3 nonsynonymous SNV uc009jso.1:c.G100C:p.A34P exonic ENSMUSG00000030703 nonsynonymous SNV ENSMUST00000032944:c.G100C:p.A34P 7qF3 NA NA chr7 133910084 CGGxCTC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 142 1 0 49.151424 0.272727 0.02 1.119657 56 21 1538 587 60 60 0 0 GG 13.804574 46 0 1226 0 KEEP + Gdpd3 YES Spont_4 chr7 135392909 135392909 C T exonic Tgfb1i1 synonymous SNV NM_009365:c.C564T:p.D188D exonic Tgfb1i1 synonymous SNV uc009jyt.1:c.C429T:p.D143D exonic ENSMUSG00000030782 synonymous SNV ENSMUST00000168825:c.C429T:p.D143D 7qF3 NA NA chr7 135392909 GGAxACC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 99 0 0 6.864924 0.08 0.02 -0.438428 46 4 1286 110 60 60 0 0 CC 11.429905 38 0 1068 0 KEEP + Tgfb1i1 NO Spont_4 chr7 138241186 138241186 A C intronic Dmbt1 NA NA intronic Dmbt1 NA NA intronic "ENSMUSG00000030849,ENSMUSG00000047517" NA NA 7qF3 "Score=0.911931;Name=No.101636,chr7:138230843" NA chr7 138241186 GTAxGTG A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 304 1 0 13.236659 0.083969 0.02 1.373755 120 11 3452 243 60 60 0 0 AA 41.800598 139 0 3877 0 KEEP + Dmbt1 NO Spont_4 chr7 147481818 147481818 T A exonic 5830411N06Rik stopgain SNV NM_001128145:c.T1095A:p.C365X exonic 5830411N06Rik stopgain SNV uc009khl.1:c.T1095A:p.C365X exonic ENSMUSG00000054672 stopgain SNV ENSMUST00000059882:c.T1095A:p.C365X 7qF4 NA NA chr7 147481818 CTGxGCT T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934428 0.934492 0.999931 77 1 0 7.752788 0.088889 0.02 -0.394502 41 4 1135 117 60 60 0 0 TT 7.518589 25 0 677 0 KEEP + 5830411N06Rik NO Spont_4 chr7 148455137 148455137 G C exonic Cdhr5 nonsynonymous SNV NM_028069:c.C1922G:p.A641G exonic Cdhr5 nonsynonymous SNV uc009kkj.2:c.C1922G:p.A641G exonic ENSMUSG00000025497 nonsynonymous SNV ENSMUST00000080654:c.C1922G:p.A641G 7qF5 NA NA chr7 148455137 GAGxCAC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 104 0 0 7.299933 0.081633 0.02 -0.429659 45 4 1265 114 60 60 0 0 GG 12.933959 43 0 1199 0 KEEP - Cdhr5 YES Spont_4 chr7 148458949 148458949 G C exonic Cdhr5 nonsynonymous SNV NM_001114322:c.C854G:p.A285G exonic Cdhr5 nonsynonymous SNV uc009kkj.2:c.C854G:p.A285G exonic ENSMUSG00000025497 nonsynonymous SNV ENSMUST00000080654:c.C854G:p.A285G 7qF5 NA NA chr7 148458949 ATGxCCT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 79 0 0 9.933673 0.119048 0.02 -0.36831 37 5 1044 142 60 60 0 0 GG 8.95754 30 0 792 0 KEEP - Cdhr5 YES Spont_4 chr7 152024754 152024754 C G exonic Fgf3 nonsynonymous SNV NM_008007:c.C142G:p.L48V exonic Fgf3 nonsynonymous SNV uc009kqp.2:c.C142G:p.L48V exonic ENSMUSG00000031074 nonsynonymous SNV ENSMUST00000105898:c.C142G:p.L48V 7qF5 NA NA chr7 152024754 AAGxTCT C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.666177 0.668523 0.99649 58 0 0 13.144247 0.206897 0.02 -0.254322 23 6 663 167 60 60 0 0 CC 4.511698 15 0 417 0 KEEP + Fgf3 YES Spont_4 chr7 19890451 19890451 G A exonic Fosb synonymous SNV NM_008036:c.C756T:p.F252F exonic Fosb synonymous SNV uc009flk.1:c.C756T:p.F252F exonic ENSMUSG00000003545 synonymous SNV ENSMUST00000003640:c.C756T:p.F252F 7qA3 NA NA chr7 19890451 GCCxAAG G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 179 0 0 12.139411 0.072165 0.02 0.836325 90 7 2396 197 60 60 0 0 GG 18.028376 60 0 1528 0 KEEP - Fosb NO Spont_4 chr7 19967589 19967589 G C intronic Ercc2 NA NA intronic Ercc2 NA NA ncRNA_exonic ENSMUSG00000091384 NA NA 7qA3 NA NA chr7 19967589 GCGxCTC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851925 0.851984 0.999931 64 0 0 38.327487 0.394737 0.02 -0.331831 23 15 619 422 60 60 0 0 GG 7.51676 25 0 678 0 KEEP + Ercc2 YES Spont_4 chr7 24539354 24539354 G C exonic Vmn1r174 nonsynonymous SNV NM_207548:c.G425C:p.S142T exonic Vmn1r174 nonsynonymous SNV uc009foj.1:c.G425C:p.S142T exonic ENSMUSG00000090411 nonsynonymous SNV ENSMUST00000167551:c.G425C:p.S142T 7qA3 "Score=0.967701;Name=No.100263,chr7:24462268" NA chr7 24539354 ATAxTTG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 505 0 34 95.707687 0.187234 0.02 5.078589 191 44 5320 1239 60 60 0 0 GG 61.359562 204 0 5701 0 KEEP + Vmn1r174 YES Spont_4 chr7 25218306 25218306 G C exonic Irgc1 nonsynonymous SNV NM_199013:c.C104G:p.P35R exonic Irgc1 nonsynonymous SNV uc009fpo.1:c.C104G:p.P35R exonic ENSMUSG00000062028 nonsynonymous SNV ENSMUST00000164959:c.C104G:p.P35R 7qA3 NA NA chr7 25218306 TGAxGGA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899217 0.899314 0.999892 72 0 0 55.186225 0.536585 0.02 -0.368236 19 22 549 570 60 60 0 0 GG 6.918619 23 0 650 0 KEEP - Irgc1 YES Spont_4 chr7 25866710 25866710 G C exonic Zfp574 nonsynonymous SNV NM_001168506:c.G2137C:p.A713P exonic "BC027703,Zfp574" nonsynonymous SNV uc009frl.1:c.C296G:p.A99G exonic ENSMUSG00000045252 nonsynonymous SNV ENSMUST00000053410:c.G2137C:p.A713P 7qA3 NA NA chr7 25866710 AGAxCCA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.71725 0.717315 0.999909 59 0 0 28.534066 0.387097 0.02 -0.271724 19 12 529 318 60 60 0 0 GG 7.189609 24 0 638 0 KEEP + Zfp574 YES Spont_4 chr7 28275027 28275027 C G UTR3 Sertad1 NA NA UTR3 Sertad1 NA NA UTR3 ENSMUSG00000008384 NA NA 7qA3 NA NA chr7 28275027 GAGxCTG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981953 0.981955 0.999997 105 0 0 36.693054 0.3 0.02 1.293657 35 15 1001 428 60 60 0 0 CC 9.60114 32 0 846 0 KEEP + Sertad1 YES Spont_4 chr7 28712348 28712348 T G intronic 1700049G17Rik NA NA intronic 1700049G17Rik NA NA intronic ENSMUSG00000070709 NA NA 7qA3 "Score=0.918182;Name=No.100311,chr7:28627045" NA chr7 28712348 AGCxTCA T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 211 3 18 15.565973 0.147059 0.02 1.001319 58 10 1653 231 60 60 0 0 TT 38.793183 129 0 3573 0 KEEP - 1700049G17Rik NO Spont_4 chr7 29347708 29347708 G C intronic Pak4 NA NA intronic Pak4 NA NA intronic ENSMUSG00000030602 NA NA 7qA3 NA NA chr7 29347708 TGGxCAC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 124 3 0 23.768964 0.177419 0.02 1.249901 51 11 1439 311 60 60 0 0 GG 12.332332 41 0 1141 0 KEEP - Pak4 YES Spont_4 chr7 31065145 31065145 G C intronic Wdr62 NA NA ncRNA_exonic AK006173 NA NA UTR5 ENSMUSG00000013928 NA NA 7qB1 NA NA chr7 31065145 GGAxTTG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 94 0 0 54.069779 0.5 0.02 -0.368189 21 21 590 567 60 60 0 0 GG 11.430009 38 0 1061 0 KEEP - Wdr62 YES Spont_4 chr7 31418734 31418734 G C exonic Etv2 stopgain SNV NM_007959:c.C927G:p.Y309X exonic Etv2 stopgain SNV uc009gfm.1:c.C927G:p.Y309X exonic ENSMUSG00000006311 stopgain SNV ENSMUST00000108147:c.C927G:p.Y309X 7qB1 NA NA chr7 31418734 TGTxTAC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 249 0 0 17.37102 0.085714 0.02 2.666662 96 9 2651 264 60 60 0 0 GG 33.371911 111 0 3042 0 KEEP - Etv2 YES Spont_4 chr7 36223348 36223348 A C exonic Cep89 nonsynonymous SNV NM_028120:c.A2137C:p.N713H exonic Ccdc123 nonsynonymous SNV uc009gjv.1:c.A2137C:p.N713H exonic ENSMUSG00000023072 nonsynonymous SNV ENSMUST00000079414:c.A2137C:p.N713H 7qB2 NA NA chr7 36223348 AGAxATA A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668463 0.668523 0.999909 59 0 0 7.959773 0.137931 0.02 -0.254312 25 4 706 111 60 60 0 0 AA 7.218956 24 0 668 0 KEEP + Cep89 NO Spont_4 chr7 46435153 46435153 C A intergenic "NONE(dist=NONE),Gm21276(dist=76841)" NA NA intergenic "NONE(dist=NONE),Gm16387(dist=76841)" NA NA intergenic "NONE(dist=NONE),ENSMUSG00000074169(dist=76841)" NA NA 7qB3 "Score=0.980122;Name=No.101108,chr7:39276342" NA chr7 46435153 TGAxCAA C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 43 0 0 7.443717 0.333333 0.02 -0.078915 6 3 161 85 60 46 0 0 CC 9.317588 31 0 830 0 KEEP NA NONE NO Spont_4 chr7 46666266 46666266 T C exonic Gm5114 synonymous SNV NM_177890:c.A528G:p.E176E exonic Gm5114 synonymous SNV uc009gkz.1:c.A528G:p.E176E exonic ENSMUSG00000053742 synonymous SNV ENSMUST00000031488:c.A528G:p.E176E 7qB3 "Score=0.96265;Name=No.101122,chr7:39348778" NA chr7 46666266 GCCxTCC T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 116 1 6 13.903369 0.107692 0.02 1.125183 58 7 1664 202 60 20 0 0 TT 11.430657 38 0 1070 0 KEEP - Gm5114 NO Spont_4 chr7 48413430 48413430 G T intergenic "Gm4884(dist=112758),Gm5592(dist=126267)" NA NA intergenic "Gm4884(dist=112758),Gm5592(dist=126267)" NA NA exonic ENSMUSG00000078737 nonsynonymous SNV ENSMUST00000108009:c.G1336T:p.A446S 7qB3 "Score=0.960073;Name=No.101182,chr7:48449098" NA chr7 48413430 CAGxCCA G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 162 0 8 8.521302 0.066667 0.02 1.028743 70 5 1988 141 60 20 0 0 GG 21.628688 72 0 1916 0 KEEP NA Gm4884 NO Spont_4 chr7 48414080 48414080 A C intergenic "Gm4884(dist=113408),Gm5592(dist=125617)" NA NA intergenic "Gm4884(dist=113408),Gm5592(dist=125617)" NA NA downstream ENSMUSG00000078737 NA NA 7qB3 "Score=0.960073;Name=No.101182,chr7:48449098" NA chr7 48414080 TAGxAAG A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 381 2 7 16.769659 0.064103 0.02 3.691319 146 10 4157 281 60 60 0 0 AA 49.62345 165 0 4571 0 KEEP NA Gm4884 NO Spont_4 chr7 53317214 53317214 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53317214 GGGxACA G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 137 0 0 22.419729 0.192308 0.02 1.241019 42 10 1222 287 70 70 0 0 GG 18.342384 61 0 1708 0 KEEP + Nomo1 NO Spont_4 chr7 53318441 53318441 G A intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53318441 ATGxGTG G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.999859 50 0 0 39.25747 0.518519 0.02 -0.245558 13 14 373 407 60 60 0 0 GG 5.414035 18 0 498 0 KEEP + Nomo1 NO Spont_4 chr7 53323993 53323993 C T intronic Nomo1 NA NA intronic Nomo1 NA NA intronic ENSMUSG00000030835 NA NA 7qB4 NA NA chr7 53323993 TCCxTTG C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.692164 0.693668 0.997832 50 0 0 21.335598 0.3 0.02 -0.263069 21 9 599 250 60 60 0 0 CC 4.813261 16 0 459 0 KEEP + Nomo1 NO Spont_4 chr7 53362372 53362372 T A exonic Abcc8 synonymous SNV NM_011510:c.A4278T:p.S1426S exonic Abcc8 synonymous SNV uc009gyd.1:c.A2253T:p.S751S exonic ENSMUSG00000040136 synonymous SNV ENSMUST00000033123:c.A4278T:p.S1426S 7qB4 NA NA chr7 53362372 GCGxGAA T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999998 91 2 0 7.065022 0.105263 0.02 -0.394553 34 4 940 107 60 60 0 0 TT 10.225011 34 0 917 0 KEEP - Abcc8 NO Spont_4 chr7 53379241 53379241 T C intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53379241 CAGxCCC T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970819 0.97082 0.999999 105 0 0 55.163063 0.396226 0.02 1.427391 32 21 906 606 60 60 0 0 TT 10.526153 35 0 953 0 KEEP - Abcc8 NO Spont_4 chr7 53435158 53435158 G A intronic Abcc8 NA NA intronic Abcc8 NA NA intronic ENSMUSG00000040136 NA NA 7qB4 NA NA chr7 53435158 GCTxGGC G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.420544 0.423478 0.993072 35 0 0 19.670523 0.4 0.02 -0.184121 12 8 323 217 60 60 0 0 GG 3.308892 11 0 311 0 KEEP - Abcc8 NO Spont_4 chr7 53517209 53517209 C A intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53517209 GGCxTGG C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161432 0.162467 0.993634 27 0 0 12.446307 0.416667 0.02 -0.113954 7 5 189 136 60 60 0 0 CC 3.6099 12 0 343 0 KEEP + Otog NO Spont_4 chr7 53521359 53521359 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53521359 AAGxAGG C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 40 0 0 14.576702 0.4 0.02 -0.157841 9 6 261 161 60 60 0 0 CC 5.112895 17 0 479 0 KEEP + Otog NO Spont_4 chr7 53521368 53521368 A G intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53521368 TGAxAGG A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.259501 0.260965 0.994391 35 0 0 12.623241 0.384615 0.02 -0.140307 8 5 224 140 60 60 0 0 AA 3.910533 13 0 367 0 KEEP + Otog NO Spont_4 chr7 53543464 53543464 C T exonic Otog synonymous SNV NM_013624:c.C5226T:p.I1742I exonic Otog synonymous SNV uc009gyk.2:c.C5226T:p.I1742I exonic ENSMUSG00000009487 synonymous SNV ENSMUST00000164538:c.C5226T:p.I1742I 7qB4 NA NA chr7 53543464 CATxGAC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717214 0.717315 0.999859 58 2 0 23.007611 0.322581 0.02 -0.2716 21 10 525 267 60 60 0 0 CC 5.407814 18 0 455 0 KEEP + Otog NO Spont_4 chr7 53553863 53553863 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553863 ATGxATC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990961 0.990964 0.999997 95 0 0 28.595856 0.220339 0.02 1.151567 46 13 1295 359 60 60 0 0 CC 8.420207 28 0 768 0 KEEP + Otog NO Spont_4 chr7 53553865 53553865 T C intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553865 GCAxCCA T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990961 0.990964 0.999997 96 0 0 23.829804 0.186441 0.02 1.249914 48 11 1302 309 60 60 0 0 TT 8.72042 29 0 784 0 KEEP + Otog NO Spont_4 chr7 53553867 53553867 C T intronic Otog NA NA intronic Otog NA NA intronic ENSMUSG00000009487 NA NA 7qB4 NA NA chr7 53553867 ATCxACC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.98954 0.989542 0.999997 97 0 0 22.322186 0.189655 0.02 1.258702 47 11 1313 293 60 60 0 0 CC 9.023407 30 0 837 0 KEEP + Otog NO Spont_4 chr7 53633192 53633192 C G intronic Myod1 NA NA intronic Myod1 NA NA intronic ENSMUSG00000009471 NA NA 7qB4 NA NA chr7 53633192 GTGxGTA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668477 0.668523 0.999931 64 0 0 15.585135 0.241379 0.02 -0.254046 22 7 518 192 60 60 0 0 CC 5.031958 24 1 567 20 KEEP + Myod1 YES Spont_4 chr7 53954822 53954822 T C exonic Saal1 synonymous SNV NM_030233:c.A954G:p.E318E exonic Saal1 synonymous SNV uc009gyu.2:c.A954G:p.E318E exonic ENSMUSG00000006763 synonymous SNV ENSMUST00000143082:c.A954G:p.E318E 7qB4 NA NA chr7 53954822 CTGxTCC T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 143 0 0 10.286883 0.105263 0.02 1.206161 51 6 1440 157 60 60 0 0 TT 17.444287 58 0 1591 0 KEEP - Saal1 NO Spont_4 chr7 53997787 53997787 G T intronic Saa1 NA NA intronic Saa1 NA NA intronic ENSMUSG00000074115 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:54006945" NA chr7 53997787 GGGxCCT G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353909 0.353947 0.999892 49 0 0 29.826851 0.578947 0.02 -0.166606 8 11 230 302 60 60 0 0 GG 6.918436 23 0 646 0 KEEP - Saa1 NO Spont_4 chr7 54008756 54008756 T A intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008756 TTTxGGG T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 79 1 1 19.417257 0.209302 0.02 -0.394618 34 9 965 247 60 60 0 0 TT 9.023745 30 0 836 0 KEEP + Saa2 NO Spont_4 chr7 54008763 54008763 T C intronic Saa2 NA NA intronic Saa2 NA NA intronic ENSMUSG00000057465 NA NA 7qB4 "Score=0.967967;Name=No.101338,chr7:53995454" NA chr7 54008763 TCAxGTT T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 85 1 1 26.061517 0.26087 0.02 -0.420872 34 12 935 318 60 60 0 0 TT 9.006226 30 0 788 0 KEEP + Saa2 NO Spont_4 chr7 54028653 54028653 A G intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54028653 AATxCCA A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 141 4 0 66.192452 0.369863 0.02 1.046417 46 27 1247 742 60 70 0 0 AA 16.527518 55 0 1431 0 KEEP - Hps5 NO Spont_4 chr7 54032439 54032439 T C intronic Hps5 NA NA intronic Hps5 NA NA intronic ENSMUSG00000014418 NA NA 7qB4 NA NA chr7 54032439 CAGxTTA T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 55 0 0 14.807373 0.285714 0.02 -0.192921 15 6 421 174 60 60 0 0 TT 8.420536 28 0 765 0 KEEP - Hps5 NO Spont_4 chr7 54104300 54104300 A G intronic Ldha NA NA intronic Ldha NA NA intronic ENSMUSG00000063229 NA NA 7qB4 NA NA chr7 54104300 AGAxTCA A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.999859 31 0 0 10.377047 0.363636 0.02 -0.105234 7 4 197 116 60 60 0 0 AA 5.411271 18 0 474 0 KEEP + Ldha NO Spont_4 chr7 54441179 54441179 G T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.C863A:p.P288H 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441179 TCAxGTG G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 282 10 2 48.309145 0.179687 0.02 3.637408 105 23 3034 635 60 60 0 0 GG 29.167216 97 0 2750 0 KEEP - Mrgpra6 NO Spont_4 chr7 54441206 54441206 C T UTR3 Mrgpra6 NA NA UTR3 Mrgpra6 NA NA exonic ENSMUSG00000052303 nonsynonymous SNV ENSMUST00000073793:c.G836A:p.S279N 7qB4 "Score=0.906234;Name=No.101339,chr7:54751786" NA chr7 54441206 GCAxTCT C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 258 12 3 29.307492 0.119048 0.02 2.174414 111 15 3092 421 60 37 0 0 CC 25.567853 85 0 2393 0 KEEP - Mrgpra6 NO Spont_4 chr7 54681932 54681932 T A exonic Mrgpra2a nonsynonymous SNV NM_001172588:c.A947T:p.E316V exonic Mrgpra2a nonsynonymous SNV uc009hag.2:c.A947T:p.E316V exonic ENSMUSG00000039854 nonsynonymous SNV ENSMUST00000060569:c.A869T:p.E290V 7qB4 "Score=0.992523;Name=No.101347,chr7:54709200" NA chr7 54681932 GTCxCAG T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 244 0 25 30.882674 0.194444 0.02 1.153339 58 14 1669 396 46 46 0 0 TT 39.094587 130 0 3632 0 KEEP - Mrgpra2a NO Spont_4 chr7 54845102 54845102 G A exonic Mrgpra3 nonsynonymous SNV NM_153067:c.C445T:p.R149C exonic Mrgpra3 nonsynonymous SNV uc009haj.2:c.C445T:p.R149C exonic ENSMUSG00000078698 nonsynonymous SNV ENSMUST00000046797:c.C364T:p.R122C 7qB4 "Score=0.935045;Name=No.101352,chr7:54805085" NA chr7 54845102 GGCxGCA G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 133 1 0 9.879918 0.116279 0.02 -0.412057 38 5 1029 142 60 29 0 0 GG 19.835636 66 0 1688 0 KEEP - Mrgpra3 NO Spont_4 chr7 55236601 55236601 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G621A:p.T207T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G621A:p.T207T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G621A:p.T207T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236601 TTTxGTC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 206 4 3 12.99941 0.094595 0.02 0.864198 67 7 1774 197 60 37 0 0 CC 27.652936 92 0 2412 0 KEEP - Mrgpra4 NO Spont_4 chr7 55236700 55236700 C T exonic Mrgpra4 synonymous SNV NM_153524:c.G522A:p.T174T exonic Mrgpra4 synonymous SNV uc009hak.1:c.G522A:p.T174T exonic ENSMUSG00000067173 synonymous SNV ENSMUST00000087092:c.G522A:p.T174T 7qB4 "Score=0.905385;Name=No.101373,chr7:55157533" NA chr7 55236700 GTTxGTT C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 215 0 0 59.023488 0.377049 0.02 1.127335 38 23 1007 656 60 60 0 0 CC 33.35385 111 0 2837 0 KEEP - Mrgpra4 NO Spont_4 chr7 55276756 55276756 A G exonic Mrgprx1 synonymous SNV NM_207540:c.T612C:p.I204I exonic Mrgprx1 synonymous SNV uc009hal.1:c.T612C:p.I204I exonic ENSMUSG00000070552 synonymous SNV ENSMUST00000094390:c.T612C:p.I204I 7qB4 NA NA chr7 55276756 GAGxATC A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119875 0.120436 0.995343 27 0 0 7.332615 0.272727 0.02 -0.096466 8 3 227 87 60 60 0 0 AA 4.195495 14 0 372 0 KEEP - Mrgprx1 NO Spont_4 chr7 55277022 55277022 T C exonic Mrgprx1 nonsynonymous SNV NM_207540:c.A346G:p.I116V exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.A346G:p.I116V exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.A346G:p.I116V 7qB4 NA NA chr7 55277022 GGAxGCT T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 80 0 0 22.772804 0.282051 0.02 -0.350688 28 11 772 276 60 60 0 0 TT 8.025024 29 1 785 6 KEEP - Mrgprx1 NO Spont_4 chr7 55277271 55277271 C T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.G97A:p.V33I exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.G97A:p.V33I exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.G97A:p.V33I 7qB4 NA NA chr7 55277271 GGAxCAG C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780953 0.78106 0.999863 59 0 0 16.103341 0.25 0.02 -0.29814 21 7 590 196 60 60 0 0 CC 6.015807 20 0 559 0 KEEP - Mrgprx1 NO Spont_4 chr7 55277275 55277275 G T exonic Mrgprx1 nonsynonymous SNV NM_207540:c.C93A:p.F31L exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.C93A:p.F31L exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.C93A:p.F31L 7qB4 NA NA chr7 55277275 CAGxAAG G T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760787 0.760887 0.999869 59 0 0 13.453182 0.222222 0.02 -0.289412 21 6 612 168 60 60 0 0 GG 6.316971 21 0 593 0 KEEP - Mrgprx1 NO Spont_4 chr7 55277282 55277282 A G exonic Mrgprx1 nonsynonymous SNV NM_207540:c.T86C:p.L29P exonic Mrgprx1 nonsynonymous SNV uc009hal.1:c.T86C:p.L29P exonic ENSMUSG00000070552 nonsynonymous SNV ENSMUST00000094390:c.T86C:p.L29P 7qB4 NA NA chr7 55277282 GACxGGG A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780958 0.78106 0.999869 59 0 0 14.581319 0.241379 0.02 -0.298077 22 7 621 182 60 60 0 0 AA 6.315881 21 0 575 0 KEEP - Mrgprx1 NO Spont_4 chr7 55424203 55424203 G C exonic Mrgprb5 synonymous SNV NM_207538:c.C153G:p.V51V exonic Mrgprb5 synonymous SNV uc009ham.1:c.C153G:p.V51V exonic ENSMUSG00000070551 synonymous SNV ENSMUST00000094389:c.C153G:p.V51V 7qB4 NA NA chr7 55424203 TAGxACT G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.691234 0.693668 0.99649 51 3 1 15.763451 0.233333 0.02 -0.263094 23 7 665 195 60 60 0 0 GG 4.512228 15 0 425 0 KEEP - Mrgprb5 YES Spont_4 chr7 55454089 55454089 A G exonic Mrgprb4 synonymous SNV NM_205795:c.T460C:p.L154L exonic Mrgprb4 synonymous SNV uc009han.1:c.T460C:p.L154L exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.T460C:p.L154L 7qB4 NA NA chr7 55454089 ACAxTAG A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229143 0.229173 0.999869 41 0 0 9.731341 0.266667 0.02 -0.131546 11 4 312 116 60 60 0 0 AA 6.31582 21 0 574 0 KEEP - Mrgprb4 NO Spont_4 chr7 55454369 55454369 C T exonic Mrgprb4 synonymous SNV NM_205795:c.G180A:p.R60R exonic Mrgprb4 synonymous SNV uc009han.1:c.G180A:p.R60R exonic ENSMUSG00000070550 synonymous SNV ENSMUST00000094388:c.G180A:p.R60R 7qB4 NA NA chr7 55454369 ATTxCTA C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818408 0.818465 0.999931 70 2 0 8.463612 0.153846 0.02 -0.315705 22 4 635 114 60 60 0 0 CC 7.512868 25 0 693 0 KEEP - Mrgprb4 NO Spont_4 chr7 55644240 55644240 C T exonic Mrgprb8 synonymous SNV NM_207539:c.C288T:p.I96I exonic Mrgprb8 synonymous SNV uc009hao.2:c.C288T:p.I96I exonic ENSMUSG00000050870 synonymous SNV ENSMUST00000056676:c.C288T:p.I96I 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644240 CATxGAC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 200 1 0 53.126948 0.237113 0.02 0.845982 74 23 1885 652 60 60 0 0 CC 19.462916 74 1 1902 26 KEEP + Mrgprb8 NO Spont_4 chr7 55644712 55644712 C T exonic Mrgprb8 nonsynonymous SNV NM_207539:c.C760T:p.P254S exonic Mrgprb8 nonsynonymous SNV uc009hao.2:c.C760T:p.P254S exonic ENSMUSG00000050870 nonsynonymous SNV ENSMUST00000056676:c.C760T:p.P254S 7qB4 "Score=0.909536;Name=No.101375,chr7:55543379" NA chr7 55644712 ATGxCTT C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.69362 0.693668 0.999931 66 0 0 24.97937 0.333333 0.02 -0.263042 20 10 556 285 60 60 0 0 CC 7.519446 25 0 691 0 KEEP + Mrgprb8 NO Spont_4 chr7 55702613 55702613 T C exonic Mrgprb1 nonsynonymous SNV NM_205810:c.A920G:p.K307R exonic Mrgprb1 nonsynonymous SNV uc009hap.1:c.A920G:p.K307R exonic ENSMUSG00000070547 nonsynonymous SNV ENSMUST00000094384:c.A920G:p.K307R 7qB4 NA NA chr7 55702613 AGCxTGA T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 131 0 0 44.750743 0.315789 0.02 1.29369 39 18 1099 516 60 60 0 0 TT 19.550963 65 0 1806 0 KEEP - Mrgprb1 NO Spont_4 chr7 56133457 56133457 T A exonic E2f8 synonymous SNV NM_001013368:c.A306T:p.S102S exonic E2f8 synonymous SNV uc009haz.2:c.A306T:p.S102S exonic ENSMUSG00000046179 synonymous SNV ENSMUST00000058745:c.A306T:p.S102S 7qB4 NA NA chr7 56133457 TCCxGAT T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 148 0 0 44.83839 0.339623 0.02 1.328755 35 18 989 510 60 60 0 0 TT 23.149536 77 0 2102 0 KEEP - E2f8 NO Spont_4 chr7 56803423 56803423 T C exonic Nav2 synonymous SNV NM_175272:c.T3429C:p.S1143S exonic Nav2 synonymous SNV uc009hbm.2:c.T3429C:p.S1143S exonic ENSMUSG00000052512 synonymous SNV ENSMUST00000064395:c.T3429C:p.S1143S 7qB4 NA NA chr7 56803423 CAGxGGG T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818349 0.818465 0.999859 62 0 0 31.523437 0.388889 0.02 -0.31556 22 14 610 353 60 60 0 0 TT 5.405568 18 0 465 0 KEEP + Nav2 NO Spont_4 chr7 57484324 57484324 T G intronic Nell1 NA NA intronic Nell1 NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57484324 GTCxGCT T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552837 0.552887 0.999909 53 1 0 20.082636 0.333333 0.02 -0.219186 16 8 454 229 60 60 0 0 TT 7.217961 24 0 656 0 KEEP + Nell1 NO Spont_4 chr7 57855795 57855795 G A UTR3 4933405O20Rik NA NA UTR3 4933405O20Rik NA NA intronic ENSMUSG00000055409 NA NA 7qB5 NA NA chr7 57855795 AGAxAGT G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.320751 0.322807 0.993634 33 0 0 17.915055 0.388889 0.02 -0.157859 11 7 320 198 60 60 0 0 GG 3.609479 12 0 337 0 KEEP + 4933405O20Rik NO Spont_4 chr7 59116908 59116908 G A exonic Fancf synonymous SNV NM_001115087:c.C717T:p.A239A exonic Fancf synonymous SNV uc012flg.1:c.C717T:p.A239A exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.C717T:p.A239A 7qB5 NA NA chr7 59116908 CTTxGCT G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 155 4 0 47.243499 0.241379 0.02 1.030622 66 21 1871 581 60 60 0 0 GG 13.52681 45 0 1245 0 KEEP - Fancf NO Spont_4 chr7 59117508 59117508 A G exonic Fancf synonymous SNV NM_001115087:c.T117C:p.R39R exonic Fancf synonymous SNV uc012flg.1:c.T117C:p.R39R exonic ENSMUSG00000092118 synonymous SNV ENSMUST00000169357:c.T117C:p.R39R 7qB5 NA NA chr7 59117508 ATAxCGC A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 84 0 0 33.043841 0.419355 0.02 -0.271836 18 13 506 360 60 60 0 0 AA 11.67874 43 1 1166 11 KEEP - Fancf NO Spont_4 chr7 59117648 59117648 C T upstream Fancf NA NA UTR5 Gas2 NA NA UTR5 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59117648 CATxCCG C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 59 0 0 8.66342 0.210526 0.02 -0.184135 15 4 431 110 60 60 0 0 CC 11.067771 37 0 1022 0 KEEP + Fancf NO Spont_4 chr7 59220735 59220735 G A intronic Gas2 NA NA UTR3 Gas2 NA NA UTR3 ENSMUSG00000030498 NA NA 7qB5 NA NA chr7 59220735 TGAxCCT G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 67 0 0 17.716153 0.35 0.02 -0.210461 13 7 365 200 60 60 0 0 GG 10.223343 34 0 926 0 KEEP + Gas2 NO Spont_4 chr7 63027927 63027927 C G exonic Siglech nonsynonymous SNV NM_178706:c.C913G:p.H305D exonic Siglech nonsynonymous SNV uc009hdb.2:c.C865G:p.H289D exonic ENSMUSG00000051504 nonsynonymous SNV ENSMUST00000094360:c.C865G:p.H289D 7qB5 NA NA chr7 63027927 GCAxACG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322767 0.322807 0.999879 47 0 0 6.710885 0.166667 0.02 -0.157853 15 3 425 88 60 60 0 0 CC 6.617305 22 0 614 0 KEEP + Siglech YES Spont_4 chr7 63068956 63068956 A T intronic Tubgcp5 NA NA intronic Tubgcp5 NA NA intronic ENSMUSG00000033790 NA NA 7qB5 NA NA chr7 63068956 TGCxGGC A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 106 2 0 32.222621 0.333333 0.02 -0.341969 26 13 725 368 60 60 0 0 AA 14.738777 49 0 1371 0 KEEP + Tubgcp5 NO Spont_4 chr7 63147515 63147515 G C intronic Cyfip1 NA NA exonic Cyfip1 nonsynonymous SNV uc009hdj.1:c.G1267C:p.G423R exonic ENSMUSG00000030447 nonsynonymous SNV ENSMUST00000168271:c.G1267C:p.G423R 7qB5 NA NA chr7 63147515 ATCxGAG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 0.999999 82 3 0 28.451336 0.4 0.02 -0.271791 18 12 511 315 60 60 0 0 GG 10.824513 36 0 965 0 KEEP + Cyfip1 YES Spont_4 chr7 63327733 63327733 A G exonic Herc2 synonymous SNV NM_010418:c.A258G:p.E86E exonic "Herc2,rjs" synonymous SNV uc009hdw.1:c.A258G:p.E86E exonic ENSMUSG00000030451 synonymous SNV ENSMUST00000041015:c.A144G:p.E48E 7qB5 NA NA chr7 63327733 AGAxGAG A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582923 0.58293 0.999988 63 0 0 19.947791 0.307692 0.02 -0.228013 18 8 514 231 60 60 0 0 AA 8.121873 27 0 763 0 KEEP + Herc2 NO Spont_4 chr7 63440089 63440089 T C intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440089 TGGxTGT T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641263 0.641347 0.999869 53 0 0 11.083081 0.178571 0.02 -0.245492 23 5 627 144 60 60 0 0 TT 6.315743 21 0 572 0 KEEP + Herc2 NO Spont_4 chr7 63440091 63440091 G A intronic Herc2 NA NA intronic Herc2 NA NA intronic ENSMUSG00000030451 NA NA 7qB5 NA NA chr7 63440091 GTTxTGA G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612323 0.612407 0.999863 51 0 0 10.170423 0.185185 0.02 -0.236742 22 5 612 134 60 60 0 0 GG 6.015478 20 0 556 0 KEEP + Herc2 NO Spont_4 chr7 63585644 63585644 G A intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63585644 ATTxAGC G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.12036 0.120436 0.999366 31 0 0 10.185699 0.4 0.02 -0.096446 6 4 164 112 60 60 0 0 GG 5.113871 17 0 485 0 KEEP + Oca2 NO Spont_4 chr7 63612621 63612621 C T intronic Oca2 NA NA intronic Oca2 NA NA intronic ENSMUSG00000030450 NA NA 7qB5 NA NA chr7 63612621 TTAxTCG C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 53 2 0 14.468646 0.352941 0.02 -0.157844 11 6 314 164 60 60 0 0 CC 7.520355 25 0 710 0 KEEP + Oca2 NO Spont_4 chr7 64664132 64664132 T C exonic Gabra5 nonsynonymous SNV NM_176942:c.A1237G:p.T413A exonic "Gabra5,Gm9962" nonsynonymous SNV uc012flm.1:c.T206C:p.V69A exonic "ENSMUSG00000055048,ENSMUSG00000055078" nonsynonymous SNV ENSMUST00000068456:c.A1237G:p.T413A 7qC NA NA chr7 64664132 CAGxCTT T C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387356 0.387407 0.999869 47 0 0 21.170637 0.4 0.02 -0.175399 12 8 344 232 60 60 0 0 TT 6.294901 21 0 554 0 KEEP + Gabra5 NO Spont_4 chr7 64677117 64677117 G A exonic Gabra5 synonymous SNV NM_176942:c.C720T:p.S240S exonic Gabra5 synonymous SNV uc009heb.1:c.C720T:p.S240S exonic ENSMUSG00000055078 synonymous SNV ENSMUST00000068456:c.C720T:p.S240S 7qC NA NA chr7 64677117 TGTxCTG G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851892 0.851984 0.999892 72 0 0 27.131226 0.315789 0.02 -0.3332 26 12 748 317 60 60 0 0 GG 6.919216 23 0 662 0 KEEP - Gabra5 NO Spont_4 chr7 64708281 64708281 C T intronic Gabra5 NA NA intronic Gabra5 NA NA intronic ENSMUSG00000055078 NA NA 7qC NA NA chr7 64708281 ACAxGCC C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717228 0.717315 0.999879 59 3 0 23.846486 0.37037 0.02 -0.271612 17 10 444 268 60 60 0 0 CC 6.614702 22 0 581 0 KEEP - Gabra5 NO Spont_4 chr7 71465995 71465995 C A intronic Mtmr10 NA NA intronic Mtmr10 NA NA intronic ENSMUSG00000030522 NA NA 7qC NA NA chr7 71465995 GTGxGTA C A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999997 82 0 0 7.610507 0.108108 0.02 -0.39456 33 4 898 112 60 60 0 0 CC 9.622974 32 0 864 0 KEEP + Mtmr10 NO Spont_4 chr7 92064620 92064620 T G exonic Olfr290 synonymous SNV NM_146416:c.T330G:p.T110T exonic Olfr290 synonymous SNV uc009ieq.1:c.T330G:p.T110T exonic ENSMUSG00000070459 synonymous SNV ENSMUST00000073468:c.T330G:p.T110T 7qD3 NA NA chr7 92064620 GACxGAA T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 335 0 11 210.984881 0.505618 0.02 3.723093 88 90 2508 2218 60 60 0 0 TT 37.296747 124 0 3441 0 KEEP + Olfr290 NO Spont_4 chr8 111474105 111474105 A C exonic Zfhx3 nonsynonymous SNV NM_007496:c.A7886C:p.E2629A exonic Zfhx3 nonsynonymous SNV uc009nid.1:c.A7886C:p.E2629A exonic ENSMUSG00000038872 nonsynonymous SNV ENSMUST00000043896:c.A7886C:p.E2629A 8qD3 NA NA chr8 111474105 AGGxAAA A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 135 0 0 8.423841 0.060976 0.02 1.074458 77 5 2173 142 60 60 0 0 AA 10.691844 39 1 1072 9 KEEP + Zfhx3 NO Spont_4 chr8 113253076 113253076 G A exonic Mtss1l nonsynonymous SNV NM_198625:c.G622A:p.E208K exonic Mtss1l nonsynonymous SNV uc009nkx.1:c.G622A:p.E208K exonic ENSMUSG00000033763 nonsynonymous SNV ENSMUST00000052457:c.G622A:p.E208K 8qE1 NA NA chr8 113253076 GGCxAGC G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 155 1 0 59.435469 0.338028 0.02 1.171323 47 24 1173 677 60 60 0 0 GG 17.385821 58 0 1489 0 KEEP + Mtss1l NO Spont_4 chr8 125657624 125657624 G C exonic Cpne7 nonsynonymous SNV NM_170684:c.G1415C:p.G472A exonic Cpne7 nonsynonymous SNV uc009nuf.1:c.G1415C:p.G472A exonic ENSMUSG00000034796 nonsynonymous SNV ENSMUST00000037900:c.G1415C:p.G472A 8qE1 NA NA chr8 125657624 TGGxCAA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.914948 0.918171 0.99649 62 0 0 10.103176 0.136364 0.02 -0.385512 38 6 1079 148 60 60 0 0 GG 4.511278 15 0 414 0 KEEP + Cpne7 YES Spont_4 chr8 127317766 127317766 G C UTR5 Trim67 NA NA UTR5 Trim67 NA NA UTR5 ENSMUSG00000036913 NA NA 8qE2 NA NA chr8 127317766 TTGxCTG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 131 0 0 72.057441 0.383562 0.02 1.144835 45 28 1266 798 60 60 0 0 GG 14.434057 48 0 1343 0 KEEP + Trim67 YES Spont_4 chr8 12993854 12993854 T A exonic Mcf2l nonsynonymous SNV NM_001159485:c.T329A:p.L110H exonic Mcf2l nonsynonymous SNV uc009kwp.1:c.T206A:p.L69H exonic ENSMUSG00000031442 nonsynonymous SNV ENSMUST00000145067:c.T206A:p.L69H 8qA1.1 NA NA chr8 12993854 AGCxTGT T A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999998 86 0 0 24.394551 0.268293 0.02 -0.359532 30 11 855 295 60 60 0 0 TT 10.217271 34 0 928 0 KEEP + Mcf2l NO Spont_4 chr8 73303660 73303660 G C exonic Mast3 nonsynonymous SNV NM_199308:c.C3571G:p.P1191A exonic Mast3 nonsynonymous SNV uc009mbp.2:c.C3571G:p.P1191A exonic ENSMUSG00000031833 nonsynonymous SNV ENSMUST00000166004:c.C3571G:p.P1191A 8qB3.3 NA NA chr8 73303660 CGGxCGG G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 267 2 0 143.495115 0.462185 0.02 2.642954 64 55 1819 1530 60 60 0 0 GG 29.078834 97 0 2582 0 KEEP - Mast3 YES Spont_4 chr8 73416398 73416398 C G exonic Slc5a5 nonsynonymous SNV NM_053248:c.G163C:p.A55P exonic Slc5a5 nonsynonymous SNV uc009mbz.2:c.G163C:p.A55P exonic ENSMUSG00000000792 nonsynonymous SNV ENSMUST00000000809:c.G163C:p.A55P 8qB3.3 NA NA chr8 73416398 CCGxCAG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999997 82 0 0 64.096316 0.55814 0.02 -0.376449 19 24 517 655 60 60 0 0 CC 9.55744 32 0 842 0 KEEP - Slc5a5 YES Spont_4 chr8 74381013 74381013 T G intergenic "Fcho1(dist=131433),Zfp709(dist=24954)" NA NA intergenic "AK142664(dist=75792),Zfp709(dist=24954)" NA NA exonic ENSMUSG00000091391 nonsynonymous SNV ENSMUST00000110075:c.A96C:p.Q32H 8qB3.3 "Score=0.985269;Name=No.104213,chr8:73657058" NA chr8 74381013 TCGxTGT T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 801 7 95 21.515252 0.042683 0.02 7.482982 314 14 8775 399 60 60 0 0 TT 88.597742 297 1 8009 6 KEEP NA Fcho1 NO Spont_4 chr8 76273925 76273925 A C intergenic "Large(dist=397470),Isx(dist=1123148)" NA NA intergenic "Large(dist=397470),AK166041(dist=840961)" NA NA downstream ENSMUSG00000047657 NA NA 8qC1 NA NA chr8 76273925 AGGxAAA A C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 192 2 22 8.504767 0.063291 0.02 1.100733 74 5 2103 142 60 60 0 0 AA 26.164225 87 0 2402 0 KEEP NA Large NO Spont_4 chr8 77416516 77416516 G A intronic Isx NA NA intronic Isx NA NA intronic ENSMUSG00000031621 NA NA 8qC1 NA NA chr8 77416516 ACAxTCC G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926556 0.92664 0.999909 73 0 0 36.518019 0.333333 0.02 -0.394568 30 15 848 418 60 60 0 0 GG 7.210589 24 0 676 0 KEEP + Isx NO Spont_4 chr8 97437547 97437547 G C exonic Ccdc102a nonsynonymous SNV NM_001033533:c.C18G:p.S6R exonic Ccdc102a nonsynonymous SNV uc009mxh.2:c.C18G:p.S6R exonic ENSMUSG00000063605 nonsynonymous SNV ENSMUST00000077955:c.C18G:p.S6R 8qD1 NA NA chr8 97437547 CGGxCTC G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926528 0.92664 0.999879 81 0 0 34.664207 0.311111 0.02 -0.39461 31 14 871 401 60 60 0 0 GG 6.617208 22 0 610 0 KEEP - Ccdc102a YES Spont_4 chr8 97541618 97541618 G C UTR5 Gpr97 NA NA UTR5 Gpr97 NA NA UTR5 ENSMUSG00000060470 NA NA 8qD1 NA NA chr8 97541618 TTGxACA G C Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 220 0 0 175.197906 0.552632 0.02 2.587322 51 63 1477 1792 60 60 0 0 GG 24.953525 83 0 2305 0 KEEP + Gpr97 YES Spont_4 chr9 103258300 103258300 A G UTR3 Cdv3 NA NA UTR3 Cdv3 NA NA UTR3 ENSMUSG00000032803 NA NA 9qF1 "Score=0.986007;Name=No.56528,chr14:43797322" NA chr9 103258300 ATAxGAT A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 112 0 0 68.671053 0.5 0.02 -0.438472 25 25 708 718 60 60 0 0 AA 14.117172 47 0 1294 0 KEEP - Cdv3 NO Spont_4 chr9 104064595 104064595 T G intronic Dnajc13 NA NA intronic Dnajc13 NA NA intronic ENSMUSG00000032560 NA NA 9qF1 NA NA chr9 104064595 GAGxCAC T G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 173 2 0 126.835722 0.592105 0.02 1.22575 31 45 885 1277 60 60 0 0 TT 20.442638 68 0 1830 0 KEEP - Dnajc13 NO Spont_4 chr9 110627627 110627627 C G exonic Pth1r nonsynonymous SNV NM_001083936:c.G1039C:p.A347P exonic Pth1r nonsynonymous SNV uc009ruo.1:c.G1039C:p.A347P exonic ENSMUSG00000032492 nonsynonymous SNV ENSMUST00000006005:c.G1039C:p.A347P 9qF2 NA NA chr9 110627627 TGGxCAA C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 493 3 0 27.888742 0.082418 0.02 3.785234 167 15 4732 432 60 60 0 0 CC 65.236802 217 0 5960 0 KEEP - Pth1r YES Spont_4 chr9 119960659 119960659 C G exonic Cx3cr1 nonsynonymous SNV NM_009987:c.G794C:p.S265T exonic Cx3cr1 nonsynonymous SNV uc009sbz.1:c.G794C:p.S265T exonic ENSMUSG00000052336 nonsynonymous SNV ENSMUST00000064165:c.G794C:p.S265T 9qF4 NA NA chr9 119960659 CAAxTGG C G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888864 0.888875 0.999988 80 0 0 57.394573 0.525 0.02 -0.359542 19 21 539 594 60 60 0 0 CC 8.120021 27 0 751 0 KEEP - Cx3cr1 YES Spont_4 chr9 122970834 122970834 A T exonic Tgm4 nonsynonymous SNV NM_177911:c.A1379T:p.Q460L exonic Tgm4 nonsynonymous SNV uc009sfo.1:c.A1379T:p.Q460L exonic ENSMUSG00000025787 nonsynonymous SNV ENSMUST00000026893:c.A1379T:p.Q460L 9qF4 NA NA chr9 122970834 TTCxGAT A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 216 1 0 14.866269 0.087912 0.02 0.888422 83 8 2372 228 60 60 0 0 AA 27.671555 92 0 2548 0 KEEP + Tgm4 NO Spont_4 chr9 14397206 14397206 G A exonic Amotl1 synonymous SNV NM_001081395:c.C1149T:p.G383G exonic Amotl1 synonymous SNV uc009oep.1:c.C1149T:p.G383G exonic ENSMUSG00000013076 synonymous SNV ENSMUST00000013220:c.C1149T:p.G383G 9qA2 NA NA chr9 14397206 GACxCCA G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490475 0.490544 0.999859 50 0 0 16.165073 0.318182 0.02 -0.201583 15 7 379 188 60 60 0 0 GG 5.404802 18 0 437 0 KEEP - Amotl1 NO Spont_4 chr9 20676006 20676006 G A intronic A230050P20Rik NA NA intronic A230050P20Rik NA NA intronic ENSMUSG00000038884 NA NA 9qA3 NA NA chr9 20676006 CCCxTGT G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 99 0 0 6.901676 0.081633 0.02 -0.438355 45 4 1203 110 60 60 0 0 GG 12.024973 40 0 1040 0 KEEP + A230050P20Rik NO Spont_4 chr9 44057974 44057974 A G exonic Pdzd3 nonsynonymous SNV NM_133226:c.T472C:p.C158R exonic Pdzd3 nonsynonymous SNV uc009pch.1:c.T472C:p.C158R exonic ENSMUSG00000032105 nonsynonymous SNV ENSMUST00000034618:c.T472C:p.C158R 9qA5.2 NA NA chr9 44057974 GGCxCAA A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 36 0 0 18.167093 0.4 0.02 -0.175348 12 8 342 202 60 60 0 0 AA 3.607133 12 0 310 0 KEEP - Pdzd3 NO Spont_4 chr9 45718429 45718429 G A intronic Pcsk7 NA NA intronic Pcsk7 NA NA intronic ENSMUSG00000035382 NA NA 9qA5.2 NA NA chr9 45718429 GCTxTAT G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 40 2 0 20.044302 0.444444 0.02 -0.157842 10 8 287 216 60 60 0 0 GG 5.715701 19 0 544 0 KEEP + Pcsk7 NO Spont_4 chrX 149344294 149344294 C T intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA intergenic "Gpr143(dist=101105),Usp51(dist=96718)" NA NA ncRNA_intronic ENSMUSG00000083440 NA NA XqF3 NA NA chrX 149344294 CTGxTGT C T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 214 1 79 30.430655 0.375 0.02 -0.298157 20 12 567 339 60 46 0 0 CC 42.399266 141 0 3913 0 KEEP NA Gpr143 NO Spont_4 chrX 39929780 39929780 A G exonic Tenm1 synonymous SNV NM_011855:c.T4693C:p.L1565L exonic Odz1 synonymous SNV uc009tbc.1:c.T4693C:p.L1565L exonic ENSMUSG00000016150 synonymous SNV ENSMUST00000115058:c.T4672C:p.L1558L XqA4 NA NA chrX 39929780 TCAxGTT A G Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999998 79 0 0 10.725813 0.135135 0.02 -0.324468 32 5 904 147 60 60 0 0 AA 9.926153 33 0 921 0 KEEP - Tenm1 NO Spont_4 chrX 71416159 71416159 G A intergenic "Tex28(dist=2982),Tktl1(dist=6439)" NA NA upstream AK220028 NA NA ncRNA_exonic ENSMUSG00000084131 NA NA XqA7.3 "Score=0.989961;Name=No.107639,chrX:12779671" NA chrX 71416159 ATCxTCC G A Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 179 0 5 7.314823 0.086957 0.02 -0.420681 42 4 1064 113 60 55 0 0 GG 31.482467 105 0 2580 0 KEEP NA Tex28 NO Spont_4 chrX 98645012 98645012 A T intronic Itgb1bp2 NA NA intronic Itgb1bp2 NA NA intronic ENSMUSG00000031312 NA NA XqD NA NA chrX 98645012 TTTxCTT A T Ot9360_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index22_CGTACG_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 90 2 0 7.97789 0.125 0.02 -0.280475 28 4 752 113 60 60 0 0 AA 13.532538 45 0 1206 0 KEEP + Itgb1bp2 NO Spont_5 chr10 126672610 126672610 C T intronic Kif5a NA NA intronic Kif5a NA NA intronic ENSMUSG00000074657 NA NA 10qD3 NA NA chr10 126672610 GCAxGGG C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.999859 28 0 0 13.787142 0.625 0.02 -0.070125 3 5 72 137 37 60 0 0 CC 5.376656 18 0 446 0 KEEP - Kif5a NO Spont_5 chr10 21868339 21868339 C T exonic E030030I06Rik synonymous SNV NM_001254744:c.G480A:p.A160A ncRNA_exonic AK053193 NA NA exonic ENSMUSG00000055657 synonymous SNV ENSMUST00000069372:c.G291A:p.A97A 10qA3 "Score=0.911237;Name=No.11846,chrUn_random:3232827" NA chr10 21868339 CACxGCC C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 37 0 2 18.079105 0.4375 0.02 -0.157749 9 7 221 195 48 60 0 0 CC 5.711334 19 0 496 0 KEEP - E030030I06Rik NO Spont_5 chr10 39667928 39667928 A C exonic G630090E17Rik synonymous SNV NM_001173500:c.T141G:p.G47G exonic G630090E17Rik synonymous SNV uc007ewi.1:c.T141G:p.G47G exonic ENSMUSG00000071335 synonymous SNV ENSMUST00000095749:c.T141G:p.G47G 10qB1 NA NA chr10 39667928 TGCxCCT A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 48 0 0 6.809567 0.625 0.02 -0.068234 3 5 65 69 60 60 0 0 AA 8.132841 29 1 731 5 KEEP - G630090E17Rik NO Spont_5 chr11 101281076 101281076 A G intronic Ptges3l NA NA intronic 1700113I22Rik NA NA intronic ENSMUSG00000075528 NA NA 11qD NA NA chr11 101281076 GGGxGGG A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.456764 0.457757 0.997832 42 0 0 8.53685 0.625 0.02 -0.190161 3 5 76 85 60 60 0 0 AA 4.743552 16 0 395 0 KEEP - Ptges3l NO Spont_5 chr11 114987643 114987643 T C exonic Cd300lf nonsynonymous SNV NM_001169153:c.A167G:p.Q56R exonic Cd300lf nonsynonymous SNV uc007mgn.2:c.A167G:p.Q56R exonic ENSMUSG00000047798 nonsynonymous SNV ENSMUST00000051264:c.A167G:p.Q56R 11qE2 NA NA chr11 114987643 CCTxGGC T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 155 0 0 13.359761 0.163265 0.02 -0.429606 41 8 1138 190 60 37 0 0 TT 27.33057 91 0 2450 0 KEEP - Cd300lf NO Spont_5 chr11 115841985 115841985 C G intronic Itgb4 NA NA intronic Itgb4 NA NA intronic ENSMUSG00000020758 NA NA 11qE2 NA NA chr11 115841985 TGCxCAG C G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139341 0.139832 0.99649 32 3 0 13.243311 0.5 0.02 -0.10516 6 6 162 140 60 60 0 0 CC 4.510838 15 0 409 0 KEEP + Itgb4 NO Spont_5 chr11 118945972 118945972 A G intronic Cbx4 NA NA intronic Cbx4 NA NA intronic ENSMUSG00000039989 NA NA 11qE2 NA NA chr11 118945972 GGGxGGG A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.863868 0.865745 0.997832 65 1 0 9.403549 0.3 0.02 -0.338833 21 9 513 131 60 60 0 1 AA 4.685845 16 0 379 0 KEEP - Cbx4 NO Spont_5 chr11 58867767 58867767 C T exonic Obscn synonymous SNV NM_199152:c.G13926A:p.G4642G exonic Obscn synonymous SNV uc011xvl.1:c.G13923A:p.G4641G exonic ENSMUSG00000061462 synonymous SNV ENSMUST00000081658:c.G5124A:p.G1708G 11qB1.3 NA NA chr11 58867767 GTTxCCC C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 135 13 0 8.853198 0.75 0.02 -0.149077 1 3 29 84 23 25 0 0 CC 34.542327 115 0 3172 0 KEEP - Obscn NO Spont_5 chr11 61303732 61303732 G C exonic Mapk7 synonymous SNV NM_011841:c.C1752G:p.A584A exonic Mapk7 synonymous SNV uc007jho.1:c.C1545G:p.A515A exonic ENSMUSG00000001034 synonymous SNV ENSMUST00000101085:c.C1443G:p.A481A 11qB2 NA NA chr11 61303732 TGGxGCA G C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 77 0 0 7.968067 0.6 0.02 -0.10521 2 3 58 80 60 60 0 0 GG 18.94791 63 0 1748 0 KEEP - Mapk7 NO Spont_5 chr11 70912515 70912515 G T intronic Nlrp1a NA NA intronic Nlrp1a NA NA intronic ENSMUSG00000069830 NA NA 11qB4 NA NA chr11 70912515 CAGxCAG G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 106 0 0 36.567511 0.428571 0.02 -0.306833 20 15 556 398 60 60 0 0 GG 16.496117 55 0 1498 0 KEEP - Nlrp1a NO Spont_5 chr11 70926991 70926991 G A exonic Nlrp1a nonsynonymous SNV NM_001004142:c.C2153T:p.A718V exonic Nlrp1a nonsynonymous SNV uc007jxq.2:c.C2153T:p.A718V exonic ENSMUSG00000069830 nonsynonymous SNV ENSMUST00000108518:c.C2153T:p.A718V 11qB4 NA NA chr11 70926991 CAGxCAG G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 155 0 0 8.196214 0.173913 0.02 -0.201681 19 4 528 109 60 29 0 0 GG 30.387765 105 1 2881 10 KEEP - Nlrp1a NO Spont_5 chr11 70969730 70969730 T A exonic Nlrp1b synonymous SNV NM_001162414:c.A3306T:p.S1102S exonic Nlrp1b synonymous SNV uc007jxs.1:c.A3306T:p.S1102S exonic ENSMUSG00000070390 synonymous SNV ENSMUST00000094046:c.A3297T:p.S1099S 11qB4 NA NA chr11 70969730 CACxGAT T A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 69 1 4 6.511147 0.166667 0.02 -0.15784 15 3 415 86 60 25 0 0 TT 12.322955 41 0 1126 0 KEEP - Nlrp1b NO Spont_5 chr11 72990798 72990798 C T UTR5 Tax1bp3 NA NA UTR5 Tax1bp3 NA NA UTR5 ENSMUSG00000040158 NA NA 11qB4 NA NA chr11 72990798 TTTxGGT C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.978509 0.981955 0.99649 82 9 4 11.245162 0.105263 0.02 1.098032 51 6 1196 167 60 37 0 0 CC 4.500454 15 0 390 0 KEEP + Tax1bp3 NO Spont_5 chr11 76493786 76493786 A T exonic Tusc5 nonsynonymous SNV NM_177709:c.A125T:p.K42M exonic Tusc5 nonsynonymous SNV uc007kfy.2:c.A125T:p.K42M exonic ENSMUSG00000046275 nonsynonymous SNV ENSMUST00000062024:c.A125T:p.K42M 11qB5 NA NA chr11 76493786 CCAxGTC A T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999999 47 0 0 22.913961 0.727273 0.02 -0.096455 3 8 84 219 60 60 0 0 AA 10.527483 35 0 974 0 KEEP + Tusc5 NO Spont_5 chr11 96145433 96145433 T C intronic Hoxb8 NA NA intronic Hoxb8 NA NA intronic ENSMUSG00000056648 NA NA 11qD NA NA chr11 96145433 CCCxCCC T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.959755 0.959859 0.999892 85 0 0 14.043866 0.363636 0.02 -0.435999 21 12 516 178 60 60 0 0 TT 6.042685 22 1 601 5 KEEP + Hoxb8 NO Spont_5 chr11 99839427 99839427 A T intergenic "Krtap9-5(dist=28562),Gm11570(dist=6590)" NA NA intergenic "Krtap9-5(dist=28562),Krtap17-1(dist=15121)" NA NA exonic ENSMUSG00000078254 stopgain SNV ENSMUST00000105051:c.T941A:p.L314X 11qD NA NA chr11 99839427 CCTxAAC A T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 79 0 0 12.793005 0.454545 0.02 -0.096453 6 5 164 137 60 60 0 0 AA 16.839984 56 0 1503 0 KEEP NA Krtap9-5 NO Spont_5 chr12 105455099 105455099 T G exonic "Serpina3f,Serpina3g" synonymous SNV NM_001168295:c.T9G:p.G3G exonic "Serpina3f,Serpina3g" synonymous SNV uc007owx.2:c.T9G:p.G3G exonic ENSMUSG00000066363 synonymous SNV ENSMUST00000167049:c.T9G:p.G3G 12qE NA NA chr12 105455099 TGGxGTC T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 126 0 0 7.494466 0.363636 0.02 -0.197415 14 8 316 101 60 60 0 0 TT 21.416889 74 1 1919 7 KEEP NA Serpina3f NO Spont_5 chr12 110955497 110955497 T G ncRNA_exonic Mir543 NA NA ncRNA_exonic Mir543 NA NA ncRNA_exonic ENSMUSG00000076241 NA NA 12qF1 NA NA chr12 110955497 TTTxCGC T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 74 0 0 18.661257 0.347826 0.02 -0.20165 15 8 415 213 60 60 0 0 TT 14.136657 47 0 1302 0 KEEP + Mir543 NO Spont_5 chr12 92498514 92498514 T C exonic Cep128 nonsynonymous SNV NM_181815:c.A2120G:p.K707R exonic 4930534B04Rik nonsynonymous SNV uc007okl.2:c.A2120G:p.K707R exonic ENSMUSG00000061533 nonsynonymous SNV ENSMUST00000143415:c.A761G:p.K254R 12qD3 NA NA chr12 92498514 AACxTCA T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 71 0 0 15.16958 0.352941 0.02 -0.149068 11 6 301 171 60 60 0 0 TT 13.836115 46 0 1281 0 KEEP - Cep128 NO Spont_5 chr13 100993191 100993191 C A exonic Naip5 nonsynonymous SNV NM_010870:c.G1491T:p.R497S exonic Naip5 nonsynonymous SNV uc007rql.1:c.G1491T:p.R497S exonic ENSMUSG00000071203 nonsynonymous SNV ENSMUST00000049789:c.G1491T:p.R497S 13qD1 "Score=0.971217;Name=No.34881,chr13:101053441" NA chr13 100993191 GAAxCTG C A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 114 1 27 12.451732 0.193548 0.02 -0.271804 25 6 677 162 55 22 0 0 CC 16.972695 66 1 1786 27 KEEP - Naip5 NO Spont_5 chr13 120284178 120284178 A C exonic Gm7120 synonymous SNV NM_001039244:c.A618C:p.I206I exonic Gm7120 synonymous SNV uc007rzl.1:c.A618C:p.I206I exonic ENSMUSG00000074634 synonymous SNV ENSMUST00000099147:c.A549C:p.I183I 13qD2.3 NA NA chr13 120284178 AATxAGC A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 854 1 0 19.858758 1 0.02 -0.052617 0 6 0 170 0 60 0 0 AA 227.63012 757 0 20618 0 KEEP + Gm7120 NO Spont_5 chr13 48686016 48686016 C T exonic Ptpdc1 nonsynonymous SNV NM_207232:c.G314A:p.R105H exonic Ptpdc1 nonsynonymous SNV uc007qii.1:c.G314A:p.R105H exonic ENSMUSG00000038042 nonsynonymous SNV ENSMUST00000035824:c.G314A:p.R105H 13qA5 NA NA chr13 48686016 ATGxGAT C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 62 3 0 9.224344 0.307692 0.02 -0.113965 9 4 237 108 60 37 0 0 CC 12.577498 42 0 1054 0 KEEP - Ptpdc1 NO Spont_5 chr13 76349386 76349386 A T intergenic "Ttc37(dist=23955),Mctp1(dist=173023)" NA NA intergenic "Ttc37(dist=21832),AK136039(dist=44009)" NA NA exonic ENSMUSG00000078966 nonsynonymous SNV ENSMUST00000109592:c.T966A:p.N322K 13qC1 NA NA chr13 76349386 AAAxTTC A T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 152 11 0 8.008044 0.063291 0.02 0.904658 74 5 2013 137 60 37 0 0 AA 22.550625 75 0 1987 0 KEEP NA Ttc37 NO Spont_5 chr14 19158930 19158930 A G exonic Ube2e1 nonsynonymous SNV NM_009455:c.T167C:p.L56P exonic Ube2e1 nonsynonymous SNV uc007shu.1:c.T167C:p.L56P exonic ENSMUSG00000021774 nonsynonymous SNV ENSMUST00000022296:c.T167C:p.L56P 14qA2 NA NA chr14 19158930 GCCxGCT A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 80 6 0 6.302986 0.133333 0.02 -0.263043 26 4 734 95 60 37 0 0 AA 12.931291 43 0 1177 0 KEEP - Ube2e1 NO Spont_5 chr14 32070480 32070480 A G exonic Bap1 nonsynonymous SNV NM_027088:c.A1253G:p.K418R exonic Bap1 nonsynonymous SNV uc007sxh.1:c.A1253G:p.K418R exonic ENSMUSG00000021901 nonsynonymous SNV ENSMUST00000022458:c.A1253G:p.K418R 14qB NA NA chr14 32070480 ACAxGCG A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 31 1 0 15.909743 0.428571 0.02 -0.122776 8 6 228 172 60 60 0 0 AA 4.785826 16 0 419 0 KEEP + Bap1 NO Spont_5 chr14 54080922 54080922 C T intergenic "Olfr1507(dist=965552),A430107P09Rik(dist=204693)" NA NA exonic Gm16452 synonymous SNV uc007tsf.1:c.C39T:p.L13L exonic ENSMUSG00000076830 synonymous SNV ENSMUST00000103641:c.C39T:p.L13L 14qC2 "Score=0.969859;Name=No.53366,chr14:53293662" NA chr14 54080922 GCTxCAG C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 429 5 37 14.56028 0.184211 0.02 -0.333228 31 7 873 191 43 20 0 0 CC 92.886169 309 0 8737 0 KEEP NA Olfr1507 NO Spont_5 chr15 101373175 101373175 C G exonic "Krt82,Krt85" nonsynonymous SNV NM_053249:c.G1229C:p.G410A exonic Krt82 nonsynonymous SNV uc007xtn.2:c.G1229C:p.G410A exonic ENSMUSG00000049548 nonsynonymous SNV ENSMUST00000023713:c.G1229C:p.G410A 15qF2 NA NA chr15 101373175 AGCxCCA C G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 170 4 0 6.873389 0.214286 0.02 -0.122768 11 3 305 86 60 37 0 0 CC 37.536195 125 0 3459 0 KEEP NA Krt82 NO Spont_5 chr15 101641892 101641892 A G exonic Krt2 synonymous SNV NM_010668:c.T1773C:p.G591G exonic Krt2 synonymous SNV uc007xub.1:c.T1773C:p.G591G exonic ENSMUSG00000064201 synonymous SNV ENSMUST00000023712:c.T1773C:p.G591G 15qF2 NA NA chr15 101641892 GGAxCCT A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 63 0 0 10.962619 0.192308 0.02 -0.227795 21 5 530 141 60 60 0 0 AA 8.099563 27 0 676 0 KEEP - Krt2 NO Spont_5 chr15 81700854 81700854 A C exonic Phf5a nonsynonymous SNV NM_026737:c.T151G:p.Y51D exonic Phf5a nonsynonymous SNV uc007wxo.1:c.T151G:p.Y51D exonic ENSMUSG00000061360 nonsynonymous SNV ENSMUST00000023117:c.T151G:p.Y51D 15qE1 NA NA chr15 81700854 CATxGTT A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 67 8 0 7.497801 0.173913 0.02 -0.20167 19 4 534 102 60 37 0 0 AA 15.037267 50 0 1370 0 KEEP - Phf5a NO Spont_5 chr15 81702300 81702300 T C UTR5 Phf5a NA NA UTR5 Phf5a NA NA UTR5 ENSMUSG00000061360 NA NA 15qE1 NA NA chr15 81702300 CTCxTTT T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 77 2 0 14.516901 0.315789 0.02 -0.166611 13 6 361 168 60 37 0 0 TT 16.840768 56 0 1517 0 KEEP - Phf5a NO Spont_5 chr15 94155232 94155232 A G exonic Adamts20 synonymous SNV NM_001164785:c.T3954C:p.G1318G exonic Adamts20 synonymous SNV uc007xje.2:c.T3954C:p.G1318G exonic ENSMUSG00000022449 synonymous SNV ENSMUST00000035342:c.T3954C:p.G1318G 15qE3 NA NA chr15 94155232 ACCxCCG A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054131 0.054137 0.999892 32 1 0 26.311601 1 0.02 -0.070155 0 8 0 225 0 60 0 0 AA 6.880875 23 0 579 0 KEEP - Adamts20 NO Spont_5 chr15 94156492 94156492 A G exonic Adamts20 nonsynonymous SNV NM_001164785:c.T3785C:p.L1262S exonic Adamts20 nonsynonymous SNV uc007xje.2:c.T3785C:p.L1262S exonic ENSMUSG00000022449 nonsynonymous SNV ENSMUST00000035342:c.T3785C:p.L1262S 15qE3 NA NA chr15 94156492 TATxAGG A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 70 1 0 53.5243 1 0.02 -0.140317 0 16 0 459 0 60 0 0 AA 14.431474 48 0 1278 0 KEEP - Adamts20 NO Spont_5 chr15 94385174 94385174 A G exonic Irak4 nonsynonymous SNV NM_029926:c.A548G:p.Q183R exonic Irak4 nonsynonymous SNV uc007xjj.2:c.A548G:p.Q183R exonic ENSMUSG00000059883 nonsynonymous SNV ENSMUST00000074936:c.A548G:p.Q183R 15qE3 NA NA chr15 94385174 AGCxACC A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 86 0 0 20.62825 1 0.02 -0.061338 0 7 0 173 0 60 0 0 AA 17.137941 57 0 1504 0 KEEP + Irak4 NO Spont_5 chr15 94393520 94393520 G C intronic Irak4 NA NA intronic Irak4 NA NA intronic ENSMUSG00000059883 NA NA 15qE3 NA NA chr15 94393520 TAAxTCC G C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 87 1 0 32.463668 1 0.02 -0.113995 0 10 0 277 0 60 0 0 GG 18.043648 60 0 1638 0 KEEP + Irak4 NO Spont_5 chr15 94420193 94420193 T G exonic Twf1 synonymous SNV NM_008971:c.A15C:p.T5T exonic Twf1 synonymous SNV uc007xjl.1:c.A15C:p.T5T exonic ENSMUSG00000022451 synonymous SNV ENSMUST00000023087:c.A15C:p.T5T 15qE3 NA NA chr15 94420193 GCCxGTC T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.967358 0.967425 0.999931 80 0 0 145.027806 1 0.02 1.141838 0 51 0 1208 0 60 0 0 TT 7.217952 24 0 653 0 KEEP - Twf1 NO Spont_5 chr15 95621368 95621368 G A UTR5 Ano6 NA NA UTR5 Ano6 NA NA UTR5 ENSMUSG00000064210 NA NA 15qF1 NA NA chr15 95621368 AGCxGAG G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036762 0.036766 0.999909 32 0 0 19.057477 1 0.02 -0.052608 0 6 0 162 0 60 0 0 GG 7.202737 24 0 540 0 KEEP + Ano6 NO Spont_5 chr15 95621369 95621369 G A UTR5 Ano6 NA NA UTR5 Ano6 NA NA UTR5 ENSMUSG00000064210 NA NA 15qF1 NA NA chr15 95621369 GCGxAGC G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036762 0.036766 0.999892 32 0 0 19.057477 1 0.02 -0.052608 0 6 0 162 0 60 0 0 GG 6.870537 23 0 614 0 KEEP + Ano6 NO Spont_5 chr15 97254962 97254962 C T intergenic "Pced1b(dist=38840),Rpap3(dist=250574)" NA NA intergenic "Fam113b(dist=38840),Rpap3(dist=250574)" NA NA intergenic "ENSMUSG00000044250(dist=38842),ENSMUSG00000022466(dist=250574)" NA NA 15qF1 NA NA chr15 97254962 CCTxTGT C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 76 0 0 31.86252 1 0.02 -0.105217 0 10 0 271 0 60 0 0 CC 17.147709 57 0 1642 0 KEEP NA Pced1b NO Spont_5 chr15 97255137 97255137 A G intergenic "Pced1b(dist=39015),Rpap3(dist=250399)" NA NA intergenic "Fam113b(dist=39015),Rpap3(dist=250399)" NA NA intergenic "ENSMUSG00000044250(dist=39017),ENSMUSG00000022466(dist=250399)" NA NA 15qF1 NA NA chr15 97255137 AGCxGGT A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 0.999997 43 0 0 15.379447 1 0.02 -0.043828 0 5 0 130 0 60 0 0 AA 9.624556 32 0 893 0 KEEP NA Pced1b NO Spont_5 chr16 32755737 32755737 C A exonic Muc4 nonsynonymous SNV NM_080457:c.C5524A:p.H1842N exonic Muc4 nonsynonymous SNV uc012aeq.1:c.C5524A:p.H1842N exonic ENSMUSG00000079620 nonsynonymous SNV ENSMUST00000096106:c.C5524A:p.H1842N 16qB3 "Score=0.914754;Name=No.61897,chr16:32752082" NA chr16 32755737 TCAxATG C A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 256 6 9 23.798738 0.203704 0.02 1.027368 43 11 1196 304 60 29 0 0 CC 53.216363 187 1 5143 28 KEEP + Muc4 NO Spont_5 chr16 32755747 32755747 G A exonic Muc4 nonsynonymous SNV NM_080457:c.G5534A:p.S1845N exonic Muc4 nonsynonymous SNV uc012aeq.1:c.G5534A:p.S1845N exonic ENSMUSG00000079620 nonsynonymous SNV ENSMUST00000096106:c.G5534A:p.S1845N 16qB3 "Score=0.914754;Name=No.61897,chr16:32752082" NA chr16 32755747 CCAxCTT G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 240 5 3 24.462152 0.23913 0.02 1.079969 35 11 989 302 60 29 0 0 GG 51.477198 181 1 4962 27 KEEP + Muc4 NO Spont_5 chr16 36359553 36359553 T A exonic BC100530 nonsynonymous SNV NM_001082546:c.A287T:p.Y96F exonic BC100530 nonsynonymous SNV uc007zcm.1:c.A287T:p.Y96F exonic ENSMUSG00000071561 nonsynonymous SNV ENSMUST00000096089:c.A287T:p.Y96F 16qB3 "Score=0.919905;Name=No.61910,chr16:36321366" NA chr16 36359553 AAGxAGG T A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 359 4 7 28.09343 0.202899 0.02 1.090818 55 14 1460 365 60 60 0 0 TT 65.818634 219 0 5841 0 KEEP - BC100530 NO Spont_5 chr17 34136794 34136794 C T exonic H2-K1 nonsynonymous SNV NM_001001892:c.G219A:p.M73I exonic H2-K1 nonsynonymous SNV uc008cap.1:c.G219A:p.M73I exonic ENSMUSG00000061232 nonsynonymous SNV ENSMUST00000025181:c.G219A:p.M73I 17qB1 "Score=0.916841;Name=No.65635,chr17:35399418" NA chr17 34136794 CTCxATC C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 336 3 1 33.481728 0.190476 0.02 0.949964 68 16 1853 436 60 25 0 0 CC 60.319828 211 1 5916 29 KEEP - H2-K1 NO Spont_5 chr17 34136815 34136815 A G exonic H2-K1 synonymous SNV NM_001001892:c.T198C:p.Y66Y exonic H2-K1 synonymous SNV uc008cap.1:c.T198C:p.Y66Y exonic ENSMUSG00000061232 synonymous SNV ENSMUST00000025181:c.T198C:p.Y66Y 17qB1 "Score=0.916841;Name=No.65635,chr17:35399418" NA chr17 34136815 CTCxTAT A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 341 5 4 37.721347 0.208333 0.02 0.658385 76 20 2056 495 60 25 0 0 AA 61.346542 204 0 5472 0 KEEP - H2-K1 NO Spont_5 chr17 34136821 34136821 C A exonic H2-K1 synonymous SNV NM_001001892:c.G192T:p.P64P exonic H2-K1 synonymous SNV uc008cap.1:c.G192T:p.P64P exonic ENSMUSG00000061232 synonymous SNV ENSMUST00000025181:c.G192T:p.P64P 17qB1 "Score=0.916841;Name=No.65635,chr17:35399418" NA chr17 34136821 TCTxGGA C A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 332 5 4 36.276152 0.189474 0.02 0.862566 77 18 1989 477 60 25 0 0 CC 59.785681 199 0 4961 0 KEEP - H2-K1 NO Spont_5 chr17 35400934 35400934 A T exonic "H2-D1,H2-L" nonsynonymous SNV NM_010380:c.A494T:p.Q165L exonic H2-D1 nonsynonymous SNV uc008chg.1:c.A494T:p.Q165L exonic ENSMUSG00000073411 nonsynonymous SNV ENSMUST00000087173:c.A494T:p.Q165L 17qB1 "Score=0.916841;Name=No.65635,chr17:34130870" NA chr17 35400934 CGCxGAT A T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 249 2 0 10.048165 0.109091 0.02 1.115268 49 6 1314 154 60 37 0 0 AA 45.501614 152 0 3996 0 KEEP NA H2-D1 NO Spont_5 chr17 35479699 35479699 G A exonic H2-Q2 nonsynonymous SNV NM_010392:c.G219A:p.M73I exonic H2-Q2 nonsynonymous SNV uc008chl.1:c.G219A:p.M73I exonic ENSMUSG00000091705 nonsynonymous SNV ENSMUST00000074806:c.G219A:p.M73I 17qB1 "Score=0.917081;Name=No.65657,chr17:35456657" NA chr17 35479699 GATxGAG G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 273 3 1 10.324271 0.147059 0.02 -0.298124 29 5 791 141 60 25 0 0 GG 59.860229 199 0 5622 0 KEEP + H2-Q2 NO Spont_5 chr17 35519871 35519871 C A exonic H2-Q4 nonsynonymous SNV NM_001143689:c.C763A:p.L255M exonic "H2-Gs10,H2-gs10" nonsynonymous SNV uc012arg.1:c.C205A:p.L69M exonic ENSMUSG00000035929 nonsynonymous SNV ENSMUST00000078205:c.C679A:p.L227M 17qB1 "Score=0.969905;Name=No.65659,chr17:35558518" NA chr17 35519871 GCCxTGG C A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 280 4 5 7.261372 0.111111 0.02 -0.315679 32 4 892 108 60 25 0 0 CC 63.453682 211 0 5864 0 KEEP + H2-Q4 NO Spont_5 chr17 35705548 35705548 G A exonic 2300002M23Rik synonymous SNV NM_175148:c.G837A:p.G279G exonic 2300002M23Rik synonymous SNV uc008cib.1:c.G837A:p.G279G exonic ENSMUSG00000039269 synonymous SNV ENSMUST00000044326:c.G837A:p.G279G 17qB1 NA NA chr17 35705548 AGGxACC G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 225 0 14 56.710942 0.187919 0.02 1.879413 121 28 3357 746 60 60 0 0 GG 18.03065 60 0 1611 0 KEEP + 2300002M23Rik NO Spont_5 chr17 35705585 35705585 C A exonic 2300002M23Rik nonsynonymous SNV NM_175148:c.C874A:p.P292T exonic 2300002M23Rik nonsynonymous SNV uc008cib.1:c.C874A:p.P292T exonic ENSMUSG00000039269 nonsynonymous SNV ENSMUST00000044326:c.C874A:p.P292T 17qB1 NA NA chr17 35705585 GGGxCCT C A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 216 0 12 49.280832 0.2 0.02 2.054978 100 25 2713 645 60 57 0 0 CC 17.665804 59 0 1531 0 KEEP + 2300002M23Rik NO Spont_5 chr17 36220723 36220723 T C exonic H2-Bl unknown UNKNOWN exonic H2-Bl synonymous SNV uc012asc.1:c.A276G:p.E92E exonic ENSMUSG00000073406 synonymous SNV ENSMUST00000025333:c.A252G:p.E84E 17qB1 "Score=0.951462;Name=No.65666,chr17:36245854" NA chr17 36220723 TGTxTCC T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 666 7 1 9.805255 0.051282 0.02 2.364744 111 6 3025 172 60 37 0 0 TT 139.426862 464 0 12592 0 KEEP - H2-Bl NO Spont_5 chr17 36302830 36302830 G C intronic Gm8909 NA NA intronic Gm8909 NA NA intronic "ENSMUSG00000073402,ENSMUSG00000092478" NA NA 17qB1 "Score=0.943326;Name=No.65669,chr17:36217153" NA chr17 36302830 GAAxATT G C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 105 8 18 32.459188 0.302326 0.02 -0.377113 30 13 864 377 37 23 0 0 GG 11.857866 49 1 1390 27 KEEP - Gm8909 NO Spont_5 chr18 37502051 37502051 C A exonic Pcdhb7 nonsynonymous SNV NM_053132:c.C585A:p.S195R exonic Pcdhb7 nonsynonymous SNV uc008eps.1:c.C585A:p.S195R exonic ENSMUSG00000045062 nonsynonymous SNV ENSMUST00000053037:c.C585A:p.S195R 18qB3 "Score=0.904557;Name=No.69631,chr18:37560711" NA chr18 37502051 CAGxAAT C A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 114 2 4 14.316535 0.315789 0.02 -0.175384 13 6 370 166 60 43 0 0 CC 24.364526 81 0 2273 0 KEEP + Pcdhb7 NO Spont_5 chr18 37679457 37679457 C T exonic Pcdhb22 synonymous SNV NM_053147:c.C1323T:p.D441D exonic Pcdhb22 synonymous SNV uc012bby.1:c.C1323T:p.D441D exonic ENSMUSG00000073591 synonymous SNV ENSMUST00000097609:c.C1323T:p.D441D 18qB3 NA NA chr18 37679457 CGAxATC C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 271 0 0 7.660496 0.137931 0.02 -0.254285 25 4 687 108 60 37 0 0 CC 59.851719 199 0 5505 0 KEEP + Pcdhb22 NO Spont_5 chr18 37679458 37679458 A G exonic Pcdhb22 nonsynonymous SNV NM_053147:c.A1324G:p.I442V exonic Pcdhb22 nonsynonymous SNV uc012bby.1:c.A1324G:p.I442V exonic ENSMUSG00000073591 nonsynonymous SNV ENSMUST00000097609:c.A1324G:p.I442V 18qB3 NA NA chr18 37679458 GACxTCA A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 268 0 0 8.425397 0.142857 0.02 -0.245446 24 4 643 115 60 37 0 0 AA 58.606683 195 0 5167 0 KEEP + Pcdhb22 NO Spont_5 chr19 31158923 31158923 C G exonic Cstf2t synonymous SNV NM_031249:c.C1368G:p.G456G exonic Cstf2t synonymous SNV uc008her.1:c.C1368G:p.G456G exonic ENSMUSG00000053536 synonymous SNV ENSMUST00000066039:c.C1368G:p.G456G 19qC1 NA NA chr19 31158923 AGGxATG C G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.578582 0.58293 0.99254 34 0 0 16.569842 0.545455 0.02 -0.227994 5 6 139 170 60 60 0 0 CC 2.70711 9 0 252 0 KEEP + Cstf2t NO Spont_5 chr19 44171738 44171738 A G exonic Chuk nonsynonymous SNV NM_001162410:c.T644C:p.I215T exonic Chuk nonsynonymous SNV uc008hpg.2:c.T644C:p.I215T exonic ENSMUSG00000025199 nonsynonymous SNV ENSMUST00000026217:c.T644C:p.I215T 19qC3 NA NA chr19 44171738 GCAxTAC A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.610258 0.612407 0.99649 44 1 1 7.893777 0.148148 0.02 -0.23675 23 4 632 109 60 37 0 0 AA 4.512014 15 0 421 0 KEEP - Chuk NO Spont_5 chr19 44171747 44171747 A G exonic Chuk nonsynonymous SNV NM_001162410:c.T635C:p.F212S exonic Chuk nonsynonymous SNV uc008hpg.2:c.T635C:p.F212S exonic ENSMUSG00000025199 nonsynonymous SNV ENSMUST00000026217:c.T635C:p.F212S 19qC3 NA NA chr19 44171747 TCAxACA A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.693571 0.693668 0.999859 51 1 2 8.096565 0.133333 0.02 -0.263056 26 4 712 113 60 37 0 0 AA 5.414333 18 0 503 0 KEEP - Chuk NO Spont_5 chr19 45524893 45524893 A G intronic Btrc NA NA intronic "Btrc,Fbxw11" NA NA exonic ENSMUSG00000057605 synonymous SNV ENSMUST00000077435:c.T793C:p.L265L 19qC3 NA NA chr19 45524893 GCAxAAT A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 111 0 13 6.311472 0.166667 0.02 -0.157832 15 3 411 84 36 25 0 0 AA 23.157407 77 0 2125 0 KEEP + Btrc NO Spont_5 chr1 175576197 175576197 C T UTR3 Pyhin1 NA NA UTR3 Pyhin1 NA NA UTR3 ENSMUSG00000043263 NA NA 1qH3 "Score=0.944642;Name=No.500,chr1:175432445" NA chr1 175576197 TTGxGGA C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.970808 0.97082 0.999988 94 0 6 12.768023 0.132075 0.02 1.035526 46 7 1220 184 60 29 0 0 CC 8.111993 27 0 667 0 KEEP + Pyhin1 NO Spont_5 chr1 180034226 180034226 C T intergenic "Gm16432(dist=55804),Desi2(dist=83322)" NA NA ncRNA_exonic EG545391 NA NA exonic ENSMUSG00000066667 nonsynonymous SNV ENSMUST00000111149:c.C1048T:p.L350F 1qH4 "Score=0.946144;Name=No.519,chr1:179767643" NA chr1 180034226 GTCxTTA C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 46 0 0 11.557226 0.217391 0.02 -0.201705 18 5 514 144 60 23 0 0 CC 5.109775 17 0 477 0 KEEP NA Gm16432 NO Spont_5 chr1 18124149 18124149 A G exonic Crisp4 nonsynonymous SNV NM_030033:c.T169C:p.S57P exonic Crisp4 nonsynonymous SNV uc007aki.1:c.T169C:p.S57P exonic ENSMUSG00000025774 nonsynonymous SNV ENSMUST00000115340:c.T169C:p.S57P 1qA3 NA NA chr1 18124149 GGGxCAC A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 0.999999 60 0 0 6.839801 0.352941 0.02 -0.148037 11 6 277 88 60 60 0 0 AA 10.521639 35 0 930 0 KEEP - Crisp4 NO Spont_5 chr1 21392603 21392603 T G exonic Kcnq5 nonsynonymous SNV NM_023872:c.A2443C:p.T815P exonic Kcnq5 nonsynonymous SNV uc007alq.2:c.A2443C:p.T815P exonic ENSMUSG00000028033 nonsynonymous SNV ENSMUST00000173058:c.A2113C:p.T705P 1qA4 NA NA chr1 21392603 GAGxTTC T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.490523 0.490544 0.999957 52 0 0 8.296354 0.173913 0.02 -0.201659 19 4 509 110 60 60 0 0 TT 7.814048 26 0 699 0 KEEP - Kcnq5 NO Spont_5 chr1 74441540 74441540 C T exonic Ctdsp1 stopgain SNV NM_153088:c.C601T:p.R201X exonic Ctdsp1 stopgain SNV uc007blz.2:c.C601T:p.R201X exonic ENSMUSG00000026176 stopgain SNV ENSMUST00000027367:c.C601T:p.R201X 1qC3 NA NA chr1 74441540 CGGxGAG C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 164 6 0 27.731447 0.375 0.02 -0.280467 20 12 509 312 60 60 0 0 CC 37.523427 125 0 3034 0 KEEP + Ctdsp1 NO Spont_5 chr1 87532150 87532150 A C exonic Sp140 nonsynonymous SNV NM_001013817:c.A989C:p.N330T exonic Sp140 nonsynonymous SNV uc007buc.1:c.A989C:p.N330T exonic ENSMUSG00000070031 nonsynonymous SNV ENSMUST00000080204:c.A989C:p.N330T 1qC5 "Score=0.981918;Name=No.304,chr1:85061113" NA chr1 87532150 CCAxTCC A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 215 2 33 7.26151 0.111111 0.02 -0.315669 32 4 882 108 57 36 0 0 AA 37.925612 136 1 3710 28 KEEP + Sp140 NO Spont_5 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 282 1 0 27.488417 0.127273 0.02 2.426094 96 14 2516 390 70 70 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO Spont_5 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 291 1 0 19.883781 0.102804 0.02 2.452192 96 11 2681 300 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP NA Ugt1a1 NO Spont_5 chr1 90112715 90112715 C A exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1087A:p.H363N exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1078A:p.H360N exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1081A:p.H361N 1qD NA NA chr1 90112715 GGTxATC C A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999135 0.999768 0.999366 112 1 0 34.252277 0.205128 0.02 0.923555 62 16 1745 438 70 60 0 0 CC 5.106648 17 0 470 0 KEEP NA Ugt1a1 NO Spont_5 chr1 90112835 90112835 C T exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1207T:p.R403C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1198T:p.R400C exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1201T:p.R401C 1qD NA NA chr1 90112835 AAGxGCA C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 200 2 0 59.830347 0.229508 0.02 2.125094 94 28 2546 750 60 60 0 0 CC 18.044386 60 0 1644 0 KEEP NA Ugt1a1 NO Spont_5 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 220 1 0 75.095182 0.261194 0.02 2.216221 99 35 2457 918 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP NA Ugt1a1 NO Spont_5 chr1 90115046 90115046 G T UTR3 "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA ncRNA_exonic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90115046 TCAxTTG G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 171 1 0 20.75714 0.09375 0.02 2.072329 116 12 3200 323 60 60 0 0 GG 12.6295 42 0 1125 0 KEEP NA Ugt1a1 NO Spont_5 chr1 90115146 90115146 C A UTR3 "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA ncRNA_exonic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90115146 TAAxAAT C A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.992708 1 0.992708 170 0 0 31.112099 0.10625 0.02 3.389101 143 17 3920 465 70 70 0 0 CC 3.008419 10 0 289 0 KEEP NA Ugt1a1 NO Spont_5 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 180 0 0 15.727778 0.095745 0.02 0.675735 85 9 2368 243 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO Spont_5 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 232 0 0 20.41716 0.136986 0.02 1.055149 63 10 1707 283 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO Spont_5 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 225 2 0 18.180098 0.176471 0.02 1.052875 42 9 1132 242 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a NO Spont_5 chr1 90142592 90142592 C T exonic Mroh2a synonymous SNV NM_001281466:c.C2586T:p.H862H exonic Heatr7b1 synonymous SNV uc011wov.1:c.C2595T:p.H865H exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.C2586T:p.H862H 1qD NA NA chr1 90142592 CCAxTTG C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 235 2 0 26.932035 0.255319 0.02 -0.412136 35 12 977 328 60 60 0 0 CC 47.181285 157 0 4345 0 KEEP + Mroh2a NO Spont_5 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 198 2 0 37.446358 0.2 0.02 0.949832 68 17 1926 478 60 60 0 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a NO Spont_5 chr1 90147949 90147949 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3319T:p.R1107W exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3328T:p.R1110W exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3319T:p.R1107W 1qD NA NA chr1 90147949 ATGxGGG C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 180 1 0 33.588267 0.190476 0.02 0.959329 68 16 1588 437 60 60 0 0 CC 28.221001 94 0 2168 0 KEEP + Mroh2a NO Spont_5 chr1 90152671 90152671 G A exonic Mroh2a synonymous SNV NM_001281466:c.G4029A:p.L1343L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G4053A:p.L1351L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G4029A:p.L1343L 1qD NA NA chr1 90152671 GCTxGCA G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 267 2 0 26.553959 0.323529 0.02 -0.298115 23 11 632 306 60 60 0 0 GG 54.42771 181 0 5105 0 KEEP + Mroh2a NO Spont_5 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 140 0 0 36.986891 0.285714 0.02 1.20425 40 16 1085 439 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO Spont_5 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.990962 0.990964 0.999998 104 0 0 45.40973 0.322581 0.02 1.053701 42 20 1179 528 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a NO Spont_5 chr1 90161760 90161760 G A exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.C1772T:p.P591L exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc011wow.1:c.C1376T:p.P459L exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000100097:c.C473T:p.P158L 1qD NA NA chr1 90161760 CAGxGCC G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 115 0 0 33.190119 0.223881 0.02 1.107804 52 15 1431 415 60 60 0 0 GG 11.731581 39 0 1104 0 KEEP NA A730008H23Rik NO Spont_5 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 270 2 0 13.504995 0.12963 0.02 1.124044 47 7 1247 192 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP NA A730008H23Rik NO Spont_5 chr2 131038872 131038872 G A UTR3 Ap5s1 NA NA UTR3 2310035K24Rik NA NA UTR3 ENSMUSG00000068264 NA NA 2qF1 NA NA chr2 131038872 CGCxAGT G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 95 0 0 58.07413 1 0.02 -0.157835 0 18 0 495 0 60 0 0 GG 19.780178 66 0 1622 0 KEEP + Ap5s1 NO Spont_5 chr2 146230608 146230608 T G exonic Ralgapa2 nonsynonymous SNV NM_001033348:c.A2809C:p.N937H exonic Ralgapa2 nonsynonymous SNV uc008msj.2:c.A2809C:p.N937H exonic ENSMUSG00000037110 nonsynonymous SNV ENSMUST00000048623:c.A2695C:p.N899H 2qG1 NA NA chr2 146230608 AGTxTGA T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 44 0 0 9.171344 0.285714 0.02 -0.122763 10 4 278 109 60 60 0 0 TT 6.918535 23 0 647 0 KEEP - Ralgapa2 NO Spont_5 chr2 152520280 152520280 A G intronic H13 NA NA intronic H13 NA NA intronic ENSMUSG00000019188 NA NA 2qH1 NA NA chr2 152520280 CTGxCCT A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 122 0 0 26.660681 0.75 0.02 -0.140298 3 9 81 253 60 60 0 0 AA 30.972035 103 0 2778 0 KEEP + H13 NO Spont_5 chr2 162760037 162760037 A G exonic Srsf6 nonsynonymous SNV NM_026499:c.A664G:p.S222G exonic Srsf6 nonsynonymous SNV uc008nsc.2:c.A664G:p.S222G exonic ENSMUSG00000016921 nonsynonymous SNV ENSMUST00000130411:c.A664G:p.S222G 2qH2 NA NA chr2 162760037 AAAxGTC A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 109 0 0 77.796216 0.447761 0.02 1.206002 37 30 1049 835 60 60 0 0 AA 12.33121 41 0 1128 0 KEEP + Srsf6 NO Spont_5 chr2 177102163 177102163 C T intergenic "Gm14405(dist=252056),Gm14420(dist=147284)" NA NA intergenic "AK078446(dist=111014),Gm14420(dist=147284)" NA NA exonic ENSMUSG00000078868 nonsynonymous SNV ENSMUST00000108959:c.G4A:p.D2N 2qH4 "Score=0.947486;Name=No.75465,chr2:174801154" NA chr2 177102163 AATxCTA C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.490538 0.490544 0.999988 55 0 2 22.707556 0.391304 0.02 -0.201684 14 9 388 251 60 60 0 0 CC 8.118489 27 0 752 0 KEEP NA Gm14405 NO Spont_5 chr2 32941538 32941538 G A intronic Garnl3 NA NA UTR5 Garnl3 NA NA UTR5 ENSMUSG00000038860 NA NA 2qB NA NA chr2 32941538 AAAxGAA G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 64 0 0 20.370577 0.4 0.02 -0.184145 12 8 330 224 60 29 0 0 GG 5.70785 19 0 517 0 KEEP - Garnl3 NO Spont_5 chr2 32941539 32941539 G A intronic Garnl3 NA NA UTR5 Garnl3 NA NA UTR5 ENSMUSG00000038860 NA NA 2qB NA NA chr2 32941539 AAGxAAG G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.99986 64 0 0 23.064244 0.428571 0.02 -0.192922 12 9 338 250 60 29 0 0 GG 5.714703 19 0 534 0 KEEP - Garnl3 NO Spont_5 chr2 69584107 69584107 G T exonic Ppig nonsynonymous SNV NM_001081086:c.G946T:p.A316S exonic Ppig nonsynonymous SNV uc008jyl.1:c.G946T:p.A316S exonic ENSMUSG00000042133 nonsynonymous SNV ENSMUST00000040915:c.G946T:p.A316S 2qC2 NA NA chr2 69584107 CCTxCTT G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.995083 0.995084 1 117 10 0 25.342181 0.181818 0.02 1.009811 54 12 1527 332 60 37 0 0 GG 11.129208 37 0 1044 0 KEEP + Ppig NO Spont_5 chr3 138110838 138110838 C T exonic Adh5 synonymous SNV NM_007410:c.C279T:p.Y93Y exonic Adh5 synonymous SNV uc008rnk.1:c.C279T:p.Y93Y exonic ENSMUSG00000028138 synonymous SNV ENSMUST00000005964:c.C279T:p.Y93Y 3qG3 NA NA chr3 138110838 CTAxATC C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 DBSNP COVERED 0.954491 0.954491 1 113 12 0 28.993811 0.265306 0.02 -0.429643 36 13 983 351 60 37 0 0 CC 15.340551 51 0 1434 0 KEEP + Adh5 NO Spont_5 chr3 142054719 142054719 G A exonic Pdlim5 synonymous SNV NM_001190857:c.C54T:p.L18L exonic Pdlim5 synonymous SNV uc012cyt.1:c.C54T:p.L18L exonic ENSMUSG00000028273 synonymous SNV ENSMUST00000058626:c.C54T:p.L18L 3qH1 "Score=0.928523;Name=No.82395,chr4:145167866" NA chr3 142054719 TTGxAGC G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.322767 0.322807 0.999879 49 1 7 8.981448 0.235294 0.02 -0.157849 13 4 369 111 60 45 0 0 GG 6.618362 22 0 632 0 KEEP - Pdlim5 NO Spont_5 chr3 33700278 33700278 G A exonic Ttc14 nonsynonymous SNV NM_025978:c.G449A:p.G150D exonic Ttc14 nonsynonymous SNV uc008oxa.1:c.G440A:p.G147D exonic ENSMUSG00000027677 nonsynonymous SNV ENSMUST00000127513:c.G143A:p.G48D 3qA3 NA NA chr3 33700278 GTGxCAT G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 64 5 0 23.229964 0.294118 0.02 -0.306753 24 10 652 274 60 60 0 0 GG 8.117815 27 0 723 0 KEEP + Ttc14 NO Spont_5 chr3 40771332 40771332 C T exonic Larp1b nonsynonymous SNV NM_001040399:c.C263T:p.P88L exonic Larp1b nonsynonymous SNV uc008pca.1:c.C263T:p.P88L exonic ENSMUSG00000037814 nonsynonymous SNV ENSMUST00000048490:c.C263T:p.P88L 3qB NA NA chr3 40771332 GACxAGA C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 44 3 0 8.138212 0.16 0.02 -0.219217 21 4 583 110 60 37 0 0 CC 5.113365 17 0 475 0 KEEP + Larp1b NO Spont_5 chr3 40771397 40771397 A G exonic Larp1b nonsynonymous SNV NM_001040399:c.A328G:p.T110A exonic Larp1b nonsynonymous SNV uc008pca.1:c.A328G:p.T110A exonic ENSMUSG00000037814 nonsynonymous SNV ENSMUST00000048490:c.A328G:p.T110A 3qB NA NA chr3 40771397 CCAxCGC A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.387161 0.387407 0.999366 34 2 1 8.864156 0.2 0.02 -0.175359 16 4 428 113 60 37 0 0 AA 5.112823 17 0 464 0 KEEP + Larp1b NO Spont_5 chr3 51659988 51659988 T C exonic Maml3 synonymous SNV NM_001004176:c.A1476G:p.Q492Q exonic Maml3 synonymous SNV uc008pef.2:c.A1476G:p.Q492Q exonic ENSMUSG00000061143 synonymous SNV ENSMUST00000082294:c.A111G:p.Q37Q 3qC NA NA chr3 51659988 TTGxTGC T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099086 0.099721 0.993634 23 0 0 11.231342 0.571429 0.02 -0.087622 3 4 86 114 60 60 0 0 TT 3.603562 12 0 303 0 KEEP - Maml3 NO Spont_5 chr3 58380770 58380770 G T exonic Selt unknown UNKNOWN exonic 2810407C02Rik unknown UNKNOWN exonic ENSMUSG00000075700 unknown UNKNOWN 3qD NA NA chr3 58380770 ACCxGGC G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.45615 0.457757 0.99649 37 5 0 11.667604 0.227273 0.02 -0.192838 17 5 432 144 60 37 0 0 GG 4.509541 15 0 395 0 KEEP + Selt NO Spont_5 chr3 87742660 87742660 G A exonic Isg20l2 synonymous SNV NM_177663:c.G957A:p.K319K exonic Isg20l2 synonymous SNV uc008ptj.1:c.G957A:p.K319K exonic ENSMUSG00000048039 synonymous SNV ENSMUST00000055984:c.G957A:p.K319K 3qF1 "Score=0.941803;Name=No.83098,chr6:128925684" NA chr3 87742660 GAAxCAT G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 114 1 0 6.47964 0.1875 0.02 -0.140311 13 3 368 84 60 60 0 0 GG 22.860694 76 0 2140 0 KEEP + Isg20l2 NO Spont_5 chr4 119094598 119094598 C A exonic Ppcs stopgain SNV NM_026494:c.G361T:p.E121X exonic Ppcs stopgain SNV uc008umm.1:c.G361T:p.E121X exonic ENSMUSG00000028636 stopgain SNV ENSMUST00000030385:c.G361T:p.E121X 4qD2.1 "Score=0.96713;Name=No.66946,chr17:8453520" NA chr4 119094598 CTTxGGC C A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 62 0 1 7.661546 0.137931 0.02 -0.254151 25 4 657 108 60 29 0 0 CC 9.009363 30 0 755 0 KEEP - Ppcs NO Spont_5 chr4 130486805 130486805 G A intronic Laptm5 NA NA intronic Laptm5 NA NA intronic ENSMUSG00000028581 NA NA 4qD2.3 NA NA chr4 130486805 CATxGTT G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 62 0 0 49.546726 1 0.02 -0.13154 0 15 0 424 0 60 0 0 GG 12.620996 42 0 1154 0 KEEP + Laptm5 NO Spont_5 chr4 141187809 141187809 A C exonic Plekhm2 nonsynonymous SNV NM_001033150:c.T1621G:p.L541V exonic Plekhm2 nonsynonymous SNV uc008voz.1:c.T1126G:p.L376V exonic ENSMUSG00000028917 nonsynonymous SNV ENSMUST00000030751:c.T1561G:p.L521V 4qE1 NA NA chr4 141187809 GCAxCTG A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.641257 0.641347 0.99986 47 0 0 6.873478 0.214286 0.02 -0.245495 11 3 300 86 60 60 0 0 AA 5.712044 19 0 500 0 KEEP - Plekhm2 NO Spont_5 chr4 143539862 143539862 G T exonic Gm13109 nonsynonymous SNV NM_001126315:c.C574A:p.L192M exonic Gm13109 nonsynonymous SNV uc012dor.1:c.C574A:p.L192M exonic ENSMUSG00000078511 nonsynonymous SNV ENSMUST00000105766:c.C574A:p.L192M 4qE1 "Score=0.959082;Name=No.86431,chr4:143129484" NA chr4 143539862 ACAxGTT G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 109 1 29 7.46146 0.105263 0.02 -0.33324 34 4 967 111 60 36 0 0 GG 12.916323 43 0 1189 0 KEEP - Gm13109 NO Spont_5 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019969 0.019982 0.999366 27 0 0 12.805194 1 0.02 -0.035073 0 4 0 109 0 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 NO Spont_5 chr4 43243060 43243060 A T intronic Unc13b NA NA intronic Unc13b NA NA intronic ENSMUSG00000028456 NA NA 4qA5 NA NA chr4 43243060 CCCxCCT A T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.99986 0.999968 0.999892 132 0 0 7.138026 0.128713 0.02 0.17415 88 13 2093 174 60 60 0 0 AA 6.912241 23 0 605 0 KEEP + Unc13b NO Spont_5 chr4 88322007 88322007 G A downstream Gm13280 NA NA downstream Gm13280 NA NA UTR3 ENSMUSG00000078355 NA NA 4qC4 NA NA chr4 88322007 CATxCAT G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 63 0 0 16.437623 0.6 0.02 -0.087689 4 6 112 165 60 60 0 0 GG 15.944745 53 0 1535 0 KEEP - Gm13280 NO Spont_5 chr4 88496324 88496324 C G exonic Ifna1 nonsynonymous SNV NM_010502:c.C334G:p.L112V exonic Ifna1 nonsynonymous SNV uc008toc.1:c.C334G:p.L112V exonic ENSMUSG00000070903 nonsynonymous SNV ENSMUST00000094972:c.C334G:p.L112V 4qC4 NA NA chr4 88496324 GACxTCC C G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 126 11 20 9.190345 0.5 0.02 -0.078828 4 4 113 97 23 29 0 0 CC 24.89871 92 1 2604 26 KEEP + Ifna1 NO Spont_5 chr5 104483354 104483354 T C exonic Nudt9 synonymous SNV NM_028794:c.T411C:p.N137N exonic Nudt9 synonymous SNV uc008yka.1:c.T411C:p.N137N exonic ENSMUSG00000029310 synonymous SNV ENSMUST00000031250:c.T411C:p.N137N 5qE5 NA NA chr5 104483354 GAAxGGC T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 69 6 0 18.32378 0.5 0.02 -0.122756 7 7 189 192 60 37 0 0 TT 13.82812 46 0 1224 0 KEEP + Nudt9 NO Spont_5 chr5 104483355 104483355 G A exonic Nudt9 nonsynonymous SNV NM_028794:c.G412A:p.G138S exonic Nudt9 nonsynonymous SNV uc008yka.1:c.G412A:p.G138S exonic ENSMUSG00000029310 nonsynonymous SNV ENSMUST00000031250:c.G412A:p.G138S 5qE5 NA NA chr5 104483355 AATxGCC G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 68 6 0 19.141436 0.538462 0.02 -0.114001 6 7 169 197 60 37 0 0 GG 13.536889 45 0 1280 0 KEEP + Nudt9 NO Spont_5 chr5 104483363 104483363 T C exonic Nudt9 synonymous SNV NM_028794:c.T420C:p.Y140Y exonic Nudt9 synonymous SNV uc008yka.1:c.T420C:p.Y140Y exonic ENSMUSG00000029310 synonymous SNV ENSMUST00000031250:c.T420C:p.Y140Y 5qE5 NA NA chr5 104483363 GTAxGAG T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 67 3 0 6.67854 0.3 0.02 -0.087679 7 3 191 79 60 25 0 0 TT 14.435805 48 0 1302 0 KEEP + Nudt9 NO Spont_5 chr5 104490737 104490737 G A exonic Nudt9 synonymous SNV NM_028794:c.G834A:p.A278A exonic Nudt9 synonymous SNV uc008yka.1:c.G834A:p.A278A exonic ENSMUSG00000029310 synonymous SNV ENSMUST00000031250:c.G834A:p.A278A 5qE5 NA NA chr5 104490737 TGCxTGG G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.260929 0.260965 0.999863 38 4 0 11.371342 0.3125 0.02 -0.140221 11 5 271 133 60 37 0 0 GG 6.011923 20 0 516 0 KEEP + Nudt9 NO Spont_5 chr5 105647433 105647433 A G exonic Gbp10 synonymous SNV NM_001039646:c.T1623C:p.H541H exonic Gbp10 synonymous SNV uc008ykz.2:c.T1623C:p.H541H exonic ENSMUSG00000054588 synonymous SNV ENSMUST00000100961:c.T1623C:p.H541H 5qE5 "Score=0.969352;Name=No.90938,chr5:105683326" NA chr5 105647433 GTTxTGG A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 189 0 1 49.745832 0.44186 0.02 -0.377044 24 19 645 535 60 60 0 0 AA 37.797953 126 0 3271 0 KEEP - Gbp10 NO Spont_5 chr5 108244879 108244879 G A exonic Evi5 nonsynonymous SNV NM_007964:c.C1073T:p.A358V exonic Evi5 nonsynonymous SNV uc008ynb.1:c.C1073T:p.A358V exonic ENSMUSG00000011831 nonsynonymous SNV ENSMUST00000011975:c.C941T:p.A314V 5qF NA NA chr5 108244879 AGCxCTA G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 102 0 2 8.270428 0.222222 0.02 -0.157751 14 4 356 105 60 60 0 0 GG 19.749289 66 0 1675 0 KEEP - Evi5 NO Spont_5 chr5 110107523 110107523 G T intergenic "Crlf2(dist=119511),Gm10416(dist=154997)" NA NA intergenic "Crlf2(dist=119511),AK019690(dist=60327)" NA NA intronic ENSMUSG00000072763 NA NA 5qF "Score=0.908568;Name=No.90960,chr5:110153058" NA chr5 110107523 ACAxGAA G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 226 3 4 7.412567 0.114286 0.02 -0.306936 31 4 886 109 60 25 0 0 GG 48.726739 162 0 4619 0 KEEP NA Crlf2 NO Spont_5 chr5 116738478 116738478 G T exonic Ccdc60 nonsynonymous SNV NM_177759:c.C68A:p.S23Y exonic Ccdc60 nonsynonymous SNV uc008zey.1:c.C68A:p.S23Y exonic ENSMUSG00000043913 nonsynonymous SNV ENSMUST00000050178:c.C68A:p.S23Y 5qF NA NA chr5 116738478 CTGxAAA G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.196284 0.196312 0.999859 36 0 0 17.923099 0.5 0.02 -0.122753 7 7 192 188 60 60 0 0 GG 5.414671 18 0 513 0 KEEP - Ccdc60 NO Spont_5 chr5 129527941 129527941 G T exonic Ran nonsynonymous SNV NM_009391:c.G311T:p.W104L exonic Ran nonsynonymous SNV uc008zss.1:c.G311T:p.W104L exonic ENSMUSG00000029430 nonsynonymous SNV ENSMUST00000111343:c.G311T:p.W104L 5qG1.3 "Score=0.989017;Name=No.78336,chr2:41841491" NA chr5 129527941 ACTxGCA G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 106 23 13 23.578279 0.285714 0.02 -0.315697 25 10 710 279 60 37 0 0 GG 17.133675 57 0 1611 0 KEEP + Ran NO Spont_5 chr5 138606318 138606318 C G exonic Mcm7 synonymous SNV NM_008568:c.G1920C:p.S640S exonic Mcm7 synonymous SNV uc009aeu.1:c.G1920C:p.S640S exonic ENSMUSG00000029730 synonymous SNV ENSMUST00000000505:c.G1920C:p.S640S 5qG2 NA NA chr5 138606318 CTTxGAC C G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 67 2 2 10.186721 0.4 0.02 -0.087645 6 4 148 112 60 29 0 0 CC 13.221855 44 0 1124 0 KEEP - Mcm7 NO Spont_5 chr5 144267851 144267851 G A exonic Rac1 synonymous SNV NM_009007:c.C571T:p.L191L exonic Rac1 synonymous SNV uc009akk.1:c.C571T:p.L191L exonic ENSMUSG00000001847 synonymous SNV ENSMUST00000080537:c.C571T:p.L191L 5qG2 "Score=0.966165;Name=No.59813,chr15:93243428" NA chr5 144267851 ACAxCAG G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 DBSNP COVERED 0.998696 0.998696 1 150 0 1 14.424627 0.105263 0.02 0.930889 68 8 1913 217 60 36 0 0 GG 20.15513 67 0 1912 0 KEEP - Rac1 NO Spont_5 chr5 77704320 77704320 G T exonic Rest synonymous SNV NM_011263:c.G945T:p.T315T exonic Rest synonymous SNV uc008xvz.2:c.G945T:p.T315T exonic ENSMUSG00000029249 synonymous SNV ENSMUST00000080359:c.G945T:p.T315T 5qC3.3 NA NA chr5 77704320 AACxCGA G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 66 7 0 20.385276 0.7 0.02 -0.087686 3 7 80 197 60 37 0 0 GG 14.109414 47 0 1182 0 KEEP + Rest NO Spont_5 chr6 122662673 122662673 G A exonic Nanog synonymous SNV NM_028016:c.G444A:p.R148R exonic "Nanog,Nanogpd" synonymous SNV uc009dpp.1:c.G444A:p.R148R exonic ENSMUSG00000012396 synonymous SNV ENSMUST00000012540:c.G444A:p.R148R 6qF2 NA NA chr6 122662673 AAGxATG G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 161 16 0 39.640077 0.4 0.02 -0.350743 24 16 668 437 60 60 0 0 GG 27.371987 91 0 2584 0 KEEP + Nanog NO Spont_5 chr6 129968825 129968825 A T intronic "Klra15,Klra19,Klra22,Klra6" NA NA ncRNA_intronic Ly49A NA NA intronic ENSMUSG00000061769 NA NA 6qF3 NA NA chr6 129968825 AATxAGG A T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 104 0 0 10.224281 0.147059 0.02 -0.306897 29 5 792 140 60 37 0 0 AA 18.644549 62 0 1663 0 KEEP NA Klra15 NO Spont_5 chr6 130009628 130009628 G C exonic "Klra15,Klra18,Klra22,Klra33,Klra4" synonymous SNV NM_001039118:c.C465G:p.V155V exonic "Klra15,Klra18,Klra22,Klra4" synonymous SNV uc009ehb.1:c.C372G:p.V124V exonic ENSMUSG00000079852 synonymous SNV ENSMUST00000169648:c.C375G:p.V125V 6qF3 NA NA chr6 130009628 CATxACG G C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 166 3 13 9.679605 0.102041 0.02 1.247969 44 5 1259 143 60 29 0 0 GG 30.083539 100 0 2879 0 KEEP NA Klra15 NO Spont_5 chr6 130107832 130107832 G T ncRNA_exonic Klra14-ps NA NA exonic Klra14 synonymous SNV uc012etu.1:c.C237A:p.L79L ncRNA_exonic ENSMUSG00000072721 NA NA 6qF3 "Score=0.927638;Name=No.94097,chr6:130012765" NA chr6 130107832 GTTxAGA G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.454419 0.457757 0.992708 68 1 27 28.421717 0.5 0.02 -0.192916 11 11 314 298 45 25 0 0 GG 8.122182 27 0 771 0 KEEP - Klra14-ps NO Spont_5 chr6 130285805 130285805 C T exonic Klra3 nonsynonymous SNV NM_010648:c.G13A:p.E5K exonic "Klra3,Klra9" nonsynonymous SNV uc012etw.1:c.G13A:p.E5K exonic ENSMUSG00000067591 nonsynonymous SNV ENSMUST00000088017:c.G13A:p.E5K 6qF3 "Score=0.942246;Name=No.94105,chr6:130219096" NA chr6 130285805 CCTxTGG C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 214 55 30 33.23983 0.168421 0.02 0.764258 79 16 2257 443 57 29 0 0 CC 29.181258 97 0 2794 0 KEEP - Klra3 NO Spont_5 chr6 37312398 37312398 C T exonic Creb3l2 synonymous SNV NM_178661:c.G543A:p.P181P exonic Creb3l2 synonymous SNV uc009bjf.2:c.G543A:p.P181P exonic ENSMUSG00000038648 synonymous SNV ENSMUST00000041093:c.G543A:p.P181P 6qB1 NA NA chr6 37312398 GTGxGGC C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 110 23 0 68.922341 0.424242 0.02 1.018853 38 28 959 751 60 37 0 0 CC 11.717871 39 0 976 0 KEEP - Creb3l2 NO Spont_5 chr7 126717257 126717257 T C exonic Acsm2 nonsynonymous SNV NM_001177977:c.T655C:p.F219L exonic Acsm2 nonsynonymous SNV uc009jlh.2:c.T580C:p.F194L exonic ENSMUSG00000030945 nonsynonymous SNV ENSMUST00000084647:c.T580C:p.F194L 7qF2 NA NA chr7 126717257 AACxTCA T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999998 53 0 0 9.302049 0.25 0.02 -0.1403 12 4 332 113 60 60 0 0 TT 9.926081 33 0 924 0 KEEP + Acsm2 NO Spont_5 chr7 149687682 149687682 T C ncRNA_intronic Gm14492 NA NA intronic "Gm14492,Tnnt3" NA NA intronic "ENSMUSG00000043795,ENSMUSG00000061723" NA NA 7qF5 NA NA chr7 149687682 CTCxCCC T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 68 0 0 9.035778 0.266667 0.02 -0.315287 11 4 250 109 60 60 0 0 TT 6.111148 28 1 640 20 KEEP - Gm14492 NO Spont_5 chr7 16344197 16344197 G A exonic Obox5 nonsynonymous SNV NM_145709:c.G727A:p.G243S exonic Obox5 nonsynonymous SNV uc009fgj.1:c.G727A:p.G243S exonic ENSMUSG00000074366 nonsynonymous SNV ENSMUST00000098802:c.G727A:p.G243S 7qA2 "Score=0.931896;Name=No.98278,chr7:15248776" NA chr7 16344197 TCTxGTC G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 151 0 4 8.059564 0.111111 0.02 -0.315636 32 4 883 116 60 36 0 0 GG 29.470587 98 0 2769 0 KEEP + Obox5 NO Spont_5 chr7 19017203 19017203 T G exonic Psg28 synonymous SNV NM_054063:c.A12C:p.S4S exonic Psg28 synonymous SNV uc009fjk.2:c.A12C:p.S4S exonic ENSMUSG00000030373 synonymous SNV ENSMUST00000019291:c.A12C:p.S4S 7qA2 "Score=0.956092;Name=No.98795,chr7:18931130" NA chr7 19017203 AGAxGAC T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 158 37 13 10.266701 0.15625 0.02 -0.280594 27 5 740 139 60 23 0 0 TT 33.959122 113 0 3024 0 KEEP - Psg28 NO Spont_5 chr7 19017228 19017228 A G UTR5 Psg28 NA NA UTR5 Psg28 NA NA UTR5 ENSMUSG00000030373 NA NA 7qA2 "Score=0.956092;Name=No.98795,chr7:18931130" NA chr7 19017228 ACTxTAC A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 167 38 14 12.103756 0.171429 0.02 -0.306876 29 6 781 162 60 23 0 0 AA 34.864534 116 0 3057 0 KEEP - Psg28 NO Spont_5 chr7 36413576 36413576 T C intronic Ankrd27 NA NA intronic Ankrd27 NA NA intronic ENSMUSG00000034867 NA NA 7qB2 NA NA chr7 36413576 CTCxCCC T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 81 0 0 9.167458 1 0.02 -0.034812 0 4 0 73 0 60 0 0 TT 18.283435 61 0 1634 0 KEEP + Ankrd27 NO Spont_5 chr7 64846619 64846619 T C UTR5 Gabrb3 NA NA UTR5 Gabrb3 NA NA UTR5 ENSMUSG00000033676 NA NA 7qC NA NA chr7 64846619 CCCxCCC T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 183 2 0 10.276625 0.236364 0.02 1.084238 42 13 1068 171 60 60 0 0 TT 29.908191 102 1 2656 5 KEEP + Gabrb3 NO Spont_5 chr8 119513068 119513068 T C exonic Gcsh nonsynonymous SNV NM_026572:c.A175G:p.T59A exonic Gcsh nonsynonymous SNV uc009not.1:c.A175G:p.T59A exonic ENSMUSG00000034424 nonsynonymous SNV ENSMUST00000040484:c.A175G:p.T59A 8qE1 NA NA chr8 119513068 CTGxCGT T C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 364 4 0 7.343754 0.333333 0.02 -0.078911 6 3 159 84 60 37 0 0 TT 84.480062 281 0 7712 0 KEEP - Gcsh NO Spont_5 chr8 13100285 13100285 T G intronic Pcid2 NA NA intronic Pcid2 NA NA intronic ENSMUSG00000038542 NA NA 8qA1.1 NA NA chr8 13100285 TTCxTCA T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099709 0.099721 0.999879 35 1 0 8.081816 0.4 0.02 -0.087651 6 4 171 91 60 60 0 0 TT 6.617569 22 0 617 0 KEEP - Pcid2 NO Spont_5 chr8 13837485 13837485 C T exonic AF366264 nonsynonymous SNV NM_153093:c.G605A:p.G202E exonic AF366264 nonsynonymous SNV uc012gaa.1:c.G605A:p.G202E exonic ENSMUSG00000057116 nonsynonymous SNV ENSMUST00000071308:c.G605A:p.G202E 8qA1.1 "Score=0.937247;Name=No.11239,chr10:21784576" NA chr8 13837485 CTCxCCT C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 328 1 2 9.405955 0.128205 0.02 -0.359519 34 5 947 135 60 25 0 0 CC 76.073611 253 0 7055 0 KEEP - AF366264 NO Spont_5 chr8 15042187 15042187 C G ncRNA_exonic BB014433 NA NA exonic BB014433 nonsynonymous SNV uc009kzl.1:c.G665C:p.R222P exonic ENSMUSG00000049008 nonsynonymous SNV ENSMUST00000050493:c.G665C:p.R222P 8qA1.1 NA NA chr8 15042187 ACCxGGG C G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.999859 0.999999 0.99986 184 0 27 13.020742 0.081967 0.02 1.649216 112 10 2947 232 30 23 0 0 CC 6.906298 23 0 590 0 KEEP - BB014433 NO Spont_5 chr8 19497717 19497717 T A UTR3 Defb7 NA NA UTR3 Defb7 NA NA UTR3 ENSMUSG00000037790 NA NA 8qA1.3 NA NA chr8 19497717 GAAxTTG T A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043783 0.043787 0.999909 36 0 1 7.654768 0.428571 0.02 -0.061382 4 3 111 83 60 37 0 0 TT 7.216989 24 0 649 0 KEEP + Defb7 NO Spont_5 chr8 19497727 19497727 C T UTR3 Defb7 NA NA UTR3 Defb7 NA NA UTR3 ENSMUSG00000037790 NA NA 8qA1.3 NA NA chr8 19497727 CTCxATG C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054132 0.054137 0.999909 34 0 1 14.385614 0.625 0.02 -0.070159 3 5 87 143 60 37 0 0 CC 7.204487 24 0 675 0 KEEP + Defb7 NO Spont_5 chr8 27268877 27268877 C T UTR5 Thap1 NA NA UTR5 Thap1 NA NA UTR5 ENSMUSG00000037214 NA NA 8qA2 NA NA chr8 27268877 CCCxTTC C T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.994286 0.994422 0.999863 84 6 0 27.085481 0.203125 0.02 1.116791 51 13 1348 349 60 60 0 0 CC 6.013637 20 0 546 0 KEEP + Thap1 NO Spont_5 chr8 27268960 27268960 G A exonic Thap1 nonsynonymous SNV NM_199042:c.G38A:p.R13H exonic Thap1 nonsynonymous SNV uc009lhq.2:c.G38A:p.R13H exonic ENSMUSG00000037214 nonsynonymous SNV ENSMUST00000036807:c.G38A:p.R13H 8qA2 NA NA chr8 27268960 ACCxCTA G A Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 103 0 0 10.254254 0.101695 0.02 1.178221 53 6 1322 158 60 60 0 0 GG 8.142827 36 1 909 25 KEEP + Thap1 NO Spont_5 chr8 74991790 74991790 G T exonic Cherp nonsynonymous SNV NM_138585:c.C1028A:p.P343Q exonic Cherp nonsynonymous SNV uc009mga.1:c.C1028A:p.P343Q exonic ENSMUSG00000052488 nonsynonymous SNV ENSMUST00000079510:c.C1028A:p.P343Q 8qB3.3 NA NA chr8 74991790 TGCxGCT G T Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138793 0.139832 0.99257 20 0 0 13.174151 0.5 0.02 -0.105224 5 5 137 138 60 60 0 0 GG 2.406547 8 0 228 0 KEEP - Cherp NO Spont_5 chr8 87549151 87549151 A C exonic Asna1 nonsynonymous SNV NM_019652:c.T14G:p.V5G exonic Asna1 nonsynonymous SNV uc009mox.1:c.T14G:p.V5G exonic ENSMUSG00000052456 nonsynonymous SNV ENSMUST00000064314:c.T14G:p.V5G 8qC3 NA NA chr8 87549151 GCCxCCC A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.693605 0.693668 0.999909 73 0 0 9.065579 0.37931 0.02 -0.249751 18 11 428 124 60 60 0 0 AA 5.398022 22 2 517 10 KEEP - Asna1 NO Spont_5 chr9 105969313 105969313 A C exonic Col6a4 nonsynonymous SNV NM_026763:c.T3292G:p.L1098V exonic Col6a4 nonsynonymous SNV uc012gzq.1:c.T3292G:p.L1098V exonic ENSMUSG00000032572 nonsynonymous SNV ENSMUST00000035186:c.T3292G:p.L1098V 9qF1 NA NA chr9 105969313 TCAxGAT A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 76 0 0 23.381115 0.454545 0.02 -0.192864 12 10 336 252 60 60 0 0 AA 15.038837 50 0 1390 0 KEEP - Col6a4 NO Spont_5 chr9 37110512 37110512 T G exonic Ccdc15 nonsynonymous SNV NM_001081429:c.A1971C:p.Q657H exonic Ccdc15 nonsynonymous SNV uc009oum.1:c.A1971C:p.Q657H exonic ENSMUSG00000034303 nonsynonymous SNV ENSMUST00000037275:c.A1971C:p.Q657H 9qA4 NA NA chr9 37110512 CACxTGT T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 86 3 0 6.732475 0.272727 0.02 -0.096461 8 3 227 81 60 25 0 0 TT 18.314394 61 0 1663 0 KEEP - Ccdc15 NO Spont_5 chr9 44494191 44494191 A C UTR3 Treh NA NA UTR3 Treh NA NA UTR3 ENSMUSG00000032098 NA NA 9qA5.2 NA NA chr9 44494191 CCCxCCC A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.260049 0.260965 0.99649 38 0 0 9.636805 0.571429 0.02 -0.137746 6 8 143 102 60 60 0 0 AA 4.382667 15 0 334 0 KEEP + Treh NO Spont_5 chr9 45011944 45011944 T G UTR5 Tmprss4 NA NA UTR5 Tmprss4 NA NA UTR5 ENSMUSG00000032091 NA NA 9qA5.2 NA NA chr9 45011944 GGGxGGG T G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 70 1 0 9.116297 0.357143 0.02 -0.253795 9 5 229 107 60 70 0 1 TT 10.955003 37 0 853 0 KEEP - Tmprss4 NO Spont_5 chr9 71372555 71372555 A G intronic Myzap NA NA intronic Gcom1 NA NA intronic "ENSMUSG00000041361,ENSMUSG00000092137" NA NA 9qD NA NA chr9 71372555 GGGxAGA A G Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 86 0 0 7.226271 0.26087 0.02 -0.20953 17 6 467 101 60 60 0 0 AA 12.327944 41 0 1107 0 KEEP - Myzap NO Spont_5 chrX 97171307 97171307 A C exonic Eda nonsynonymous SNV NM_001177937:c.A188C:p.E63A exonic Eda nonsynonymous SNV uc009tvo.1:c.A188C:p.E63A exonic ENSMUSG00000059327 nonsynonymous SNV ENSMUST00000071453:c.A188C:p.E63A XqC3 NA NA chrX 97171307 TAGxGTT A C Spont_bME_2_AGTTCC 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 46 0 0 13.093226 0.454545 0.02 -0.140298 6 5 166 140 60 60 0 0 AA 8.722754 29 0 807 0 KEEP + Eda NO Spont_5 chr10 126627988 126627988 A G UTR3 Dtx3 NA NA UTR3 Dtx3 NA NA UTR3 ENSMUSG00000040415 NA NA 10qD3 NA NA chr10 126627988 AGGxCAG A G Spont_bME_2_AGTTCC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.641346 0.641347 0.999998 77 2 0 40.45609 0.535714 0.02 -0.245504 13 15 343 417 60 60 0 0 AA 9.925187 33 0 914 0 KEEP - Dtx3 NO Spont_5 chr11 98712694 98712694 T G UTR3 Rapgefl1 NA NA UTR3 Rapgefl1 NA NA UTR3 ENSMUSG00000038020 NA NA 11qD NA NA chr11 98712694 ACCxTGC T G Spont_bME_2_AGTTCC Ot5146_Karl-Rudolf.Muhlbauer_300-724_mEx-A_30x_09252012-reads1-index29_CAACTA_L003 0 NOVEL COVERED 0.19521 0.196312 0.994391 27 0 0 13.406384 0.428571 0.02 -0.122727 8 6 223 147 60 60 0 0 TT 3.910971 13 0 376 0 KEEP + Rapgefl1 NO UVC_1 chr10 116514635 116514635 C T exonic Frs2 synonymous SNV NM_177798:c.G345A:p.E115E exonic Frs2 synonymous SNV uc007hct.1:c.G345A:p.E115E exonic ENSMUSG00000020170 synonymous SNV ENSMUST00000020381:c.G345A:p.E115E 10qD2 NA NA chr10 116514635 CGGxTCT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 123 0 0 17.706396 0.75 0.02 -0.070156 2 6 58 168 60 60 0 0 CC 28.565857 95 0 2677 0 KEEP - Frs2 YES UVC_1 chr10 12103966 12103966 T G UTR3 Utrn NA NA UTR3 Utrn NA NA UTR3 ENSMUSG00000019820 NA NA 10qA1 NA NA chr10 12103966 ATGxTGG T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036761 0.036766 0.999879 37 2 0 8.2247 0.5 0.02 -0.052616 3 3 83 86 60 60 0 0 TT 6.616352 22 0 599 0 KEEP - Utrn NO UVC_1 chr10 127293945 127293945 A G exonic Rdh19 nonsynonymous SNV NM_147222:c.A424G:p.I142V exonic Rdh19 nonsynonymous SNV uc007hkt.1:c.A424G:p.I142V exonic ENSMUSG00000054052 nonsynonymous SNV ENSMUST00000077530:c.A424G:p.I142V 10qD3 NA NA chr10 127293945 ATGxTCG A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 238 2 0 11.881218 0.238095 0.02 -0.184151 16 5 444 145 60 60 0 0 AA 55.925757 186 0 5084 0 KEEP + Rdh19 NO UVC_1 chr10 128013110 128013110 T C intronic Erbb3 NA NA intronic Erbb3 NA NA intronic ENSMUSG00000018166 NA NA 10qD3 NA NA chr10 128013110 ACCxTCT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 124 0 0 16.982983 1 0.02 -0.043852 0 5 0 146 0 60 0 0 TT 30.379607 101 0 2814 0 KEEP - Erbb3 NO UVC_1 chr10 128698486 128698486 T G exonic Olfr776 synonymous SNV NM_207559:c.T468G:p.P156P exonic Olfr776 synonymous SNV uc007hpr.1:c.T468G:p.P156P exonic ENSMUSG00000059402 synonymous SNV ENSMUST00000073704:c.T468G:p.P156P 10qD3 NA NA chr10 128698486 CCCxTTA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 200 2 0 6.665652 0.210526 0.02 -0.175329 15 4 431 90 60 60 0 0 TT 44.216336 147 0 4117 0 KEEP + Olfr776 NO UVC_1 chr10 129102813 129102813 A C ncRNA_exonic Mir684-1 NA NA ncRNA_exonic Mir684-1 NA NA intergenic "ENSMUSG00000063452(dist=5014),ENSMUSG00000058513(dist=3804)" NA NA 10qD3 NA NA chr10 129102813 TGTxGGG A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 155 0 46 13.875574 0.5 0.02 -0.087678 5 5 130 145 36 29 0 0 AA 38.451705 128 0 3399 0 KEEP + Mir684-1 NO UVC_1 chr10 129792482 129792482 T G intronic Tespa1 NA NA intronic 5830405N20Rik NA NA intronic ENSMUSG00000034833 NA NA 10qD3 NA NA chr10 129792482 AACxTTT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.994391 21 0 0 8.423561 1 0.02 -0.026268 0 3 0 70 0 60 0 0 TT 3.91064 13 0 369 0 KEEP + Tespa1 NO UVC_1 chr10 28212703 28212703 C T intronic Ptprk NA NA intronic Ptprk NA NA intronic ENSMUSG00000019889 NA NA 10qA4 NA NA chr10 28212703 TTTxTTT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036762 0.036766 0.999892 29 0 0 15.209246 0.833333 0.02 -0.052616 1 5 29 140 60 60 0 0 CC 6.918235 23 0 651 0 KEEP + Ptprk YES UVC_1 chr10 5100705 5100705 G A intergenic "Syne1(dist=91113),Syne1(dist=51129)" NA NA intergenic "Syne1(dist=78549),Syne1(dist=51129)" NA NA exonic ENSMUSG00000019769 nonsynonymous SNV ENSMUST00000056571:c.G11863A:p.E3955K 10qA1 NA NA chr10 5100705 CTAxAGA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.993634 17 0 0 6.452686 1 0.02 -0.017537 0 2 0 55 0 60 0 0 GG 3.609034 12 0 337 0 KEEP NA Syne1 YES UVC_1 chr10 78941252 78941252 A G exonic Vmn2r83 synonymous SNV NM_001104537:c.A588G:p.T196T exonic Vmn2r83 synonymous SNV uc009vab.1:c.A588G:p.T196T exonic ENSMUSG00000091381 synonymous SNV ENSMUST00000167976:c.A588G:p.T196T 10qC1 NA NA chr10 78941252 CACxTCT A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999999 48 0 0 7.423497 0.5 0.02 -0.052606 3 3 85 78 60 60 0 0 AA 10.826975 36 0 978 0 KEEP + Vmn2r83 NO UVC_1 chr10 79499976 79499976 T C exonic Polr2e nonsynonymous SNV NM_025554:c.A386G:p.Q129R exonic Polr2e nonsynonymous SNV uc007gbi.1:c.A386G:p.Q129R exonic ENSMUSG00000004667 nonsynonymous SNV ENSMUST00000004786:c.A386G:p.Q129R 10qC1 NA NA chr10 79499976 AACxGTT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 52 0 0 7.732596 0.375 0.02 -0.070161 5 3 146 86 60 60 0 0 TT 11.128842 37 0 1026 0 KEEP - Polr2e NO UVC_1 chr10 80732294 80732294 G A exonic Apba3 nonsynonymous SNV NM_018758:c.G572A:p.R191Q exonic Apba3 nonsynonymous SNV uc007ggz.2:c.G572A:p.R191Q exonic ENSMUSG00000004931 nonsynonymous SNV ENSMUST00000057798:c.G572A:p.R191Q 10qC1 NA NA chr10 80732294 GCCxGGA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 228 2 0 36.914494 0.75 0.02 -0.140323 4 12 115 351 60 60 0 0 GG 51.099019 170 0 4439 0 KEEP + Apba3 YES UVC_1 chr10 84257366 84257366 G A intronic Rfx4 NA NA intronic Rfx4 NA NA exonic ENSMUSG00000063986 synonymous SNV ENSMUST00000091811:c.C87T:p.N29N 10qC1 NA NA chr10 84257366 GGTxTTC G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 97 0 0 11.519407 0.8 0.02 -0.04384 1 4 28 107 60 60 0 0 GG 24.955535 83 0 2266 0 KEEP + Rfx4 YES UVC_1 chr11 102137745 102137745 G A exonic Asb16 nonsynonymous SNV NM_148953:c.G622A:p.E208K exonic Asb16 nonsynonymous SNV uc007lra.1:c.G622A:p.E208K exonic ENSMUSG00000034768 nonsynonymous SNV ENSMUST00000036467:c.G622A:p.E208K 11qD NA NA chr11 102137745 CAAxAGA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999366 22 0 0 6.452686 1 0.02 -0.017537 0 2 0 55 0 60 0 0 GG 5.114267 17 0 490 0 KEEP + Asb16 YES UVC_1 chr11 102299806 102299806 G A exonic Fam171a2 synonymous SNV NM_199200:c.C1440T:p.F480F exonic Fam171a2 synonymous SNV uc007lrw.1:c.C1440T:p.F480F exonic ENSMUSG00000034685 synonymous SNV ENSMUST00000049057:c.C1440T:p.F480F 11qD NA NA chr11 102299806 GTCxAAG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 46 0 0 8.368821 0.6 0.02 -0.043849 2 3 59 84 60 60 0 0 GG 12.025506 40 0 1074 0 KEEP - Fam171a2 YES UVC_1 chr11 107915247 107915247 T G intronic Prkca NA NA intronic Prkca NA NA intronic ENSMUSG00000050965 NA NA 11qE1 NA NA chr11 107915247 ACCxTGA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 238 0 0 33.338709 0.684211 0.02 -0.166516 6 13 173 323 60 60 0 0 TT 53.239346 177 0 4930 0 KEEP - Prkca NO UVC_1 chr11 109386746 109386746 T C exonic Arsg synonymous SNV NM_028710:c.T504C:p.T168T exonic Arsg synonymous SNV uc007mcn.1:c.T504C:p.T168T exonic ENSMUSG00000020604 synonymous SNV ENSMUST00000106697:c.T504C:p.T168T 11qE1 NA NA chr11 109386746 CACxGAT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 155 0 0 11.312845 0.294118 0.02 -0.149073 12 5 347 134 60 60 0 0 TT 33.97472 113 0 3109 0 KEEP + Arsg NO UVC_1 chr11 110020377 110020377 A G intronic Abca9 NA NA intronic Abca9 NA NA intronic ENSMUSG00000041797 NA NA 11qE1 NA NA chr11 110020377 GCAxGAA A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.01998 0.019982 0.999931 31 0 0 8.853233 0.75 0.02 -0.035076 1 3 28 84 60 60 0 0 AA 7.520178 25 0 705 0 KEEP - Abca9 NO UVC_1 chr11 114644270 114644270 C G intronic Kif19a NA NA intronic Kif19a NA NA intronic ENSMUSG00000010021 NA NA 11qE2 NA NA chr11 114644270 TAGxCAG C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 119 0 0 17.338532 0.6 0.02 -0.087699 4 6 115 174 60 60 0 0 CC 25.4959 85 0 2280 0 KEEP + Kif19a NO UVC_1 chr11 115110942 115110942 T C exonic Grin2c synonymous SNV NM_010350:c.A3663G:p.Q1221Q exonic Grin2c synonymous SNV uc011yhk.1:c.A3663G:p.Q1221Q exonic ENSMUSG00000020734 nonsynonymous SNV ENSMUST00000019007:c.A3430G:p.R1144G 11qE2 NA NA chr11 115110942 CCCxTGT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 65 0 0 7.179719 0.3 0.02 -0.087641 7 3 190 84 60 60 0 0 TT 13.801056 46 0 1252 0 KEEP - Grin2c NO UVC_1 chr11 115450439 115450439 A T exonic Gga3 nonsynonymous SNV NM_001252067:c.T759A:p.D253E exonic Gga3 nonsynonymous SNV uc007mhy.1:c.T759A:p.D253E exonic ENSMUSG00000020740 nonsynonymous SNV ENSMUST00000019135:c.T759A:p.D253E 11qE2 NA NA chr11 115450439 ACGxTCA A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 103 0 1 9.891527 0.333333 0.02 -0.105223 8 4 217 113 60 60 0 0 AA 23.755261 79 0 2109 0 KEEP - Gga3 NO UVC_1 chr11 116465027 116465027 C T exonic Rhbdf2 nonsynonymous SNV NM_001167680:c.G1058A:p.S353N exonic Rhbdf2 nonsynonymous SNV uc007mlu.2:c.G914A:p.S305N exonic ENSMUSG00000020806 nonsynonymous SNV ENSMUST00000103028:c.G1058A:p.S353N 11qE2 NA NA chr11 116465027 TAGxTTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 59 0 0 7.532544 0.375 0.02 -0.070157 5 3 143 84 60 60 0 0 CC 13.232774 44 0 1202 0 KEEP - Rhbdf2 YES UVC_1 chr11 116808532 116808532 C T intronic Mgat5b NA NA intronic Mgat5b NA NA intronic ENSMUSG00000043857 NA NA 11qE2 NA NA chr11 116808532 GTCxCAA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 81 0 0 11.200015 0.5 0.02 -0.070153 4 4 110 117 60 60 0 0 CC 17.398836 58 0 1593 0 KEEP + Mgat5b YES UVC_1 chr11 11702665 11702665 T G exonic Fignl1 nonsynonymous SNV NM_001163360:c.A392C:p.K131T exonic Fignl1 nonsynonymous SNV uc011xro.1:c.A392C:p.K131T exonic ENSMUSG00000035455 nonsynonymous SNV ENSMUST00000171080:c.A392C:p.K131T 11qA1 NA NA chr11 11702665 AATxTCT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 80 0 0 6.572926 0.2 0.02 -0.131538 12 3 336 84 60 60 0 0 TT 15.936066 53 0 1465 0 KEEP - Fignl1 NO UVC_1 chr11 117942097 117942097 C T exonic Dnah17 synonymous SNV NM_001167746:c.G6423A:p.L2141L exonic Dnahc17 synonymous SNV uc007moo.2:c.G6423A:p.L2141L exonic ENSMUSG00000033987 synonymous SNV ENSMUST00000132685:c.G3570A:p.L1190L 11qE2 NA NA chr11 117942097 GTCxAGG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 164 0 0 6.392609 0.176471 0.02 -0.149093 14 3 410 84 60 60 0 0 CC 34.578013 115 0 3236 0 KEEP - Dnah17 YES UVC_1 chr11 118852119 118852119 T G exonic Enpp7 nonsynonymous SNV NM_001030291:c.T775G:p.F259V exonic Enpp7 nonsynonymous SNV uc007mpr.1:c.T775G:p.F259V exonic ENSMUSG00000046697 nonsynonymous SNV ENSMUST00000092373:c.T775G:p.F259V 11qE2 NA NA chr11 118852119 GAGxTCC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 119 0 0 10.622745 0.444444 0.02 -0.078925 5 4 141 114 60 60 0 0 TT 27.068429 90 0 2473 0 KEEP + Enpp7 NO UVC_1 chr11 119303158 119303158 C T intergenic "Mir1932(dist=51283),Endov(dist=49503)" NA NA intergenic "Rnf213(dist=11540),BC075659(dist=19357)" NA NA exonic ENSMUSG00000070327 synonymous SNV ENSMUST00000131035:c.C7878T:p.L2626L 11qE2 NA NA chr11 119303158 TCTxCAT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 144 2 0 34.09058 0.631579 0.02 -0.166622 7 12 203 338 60 60 0 0 CC 31.887588 106 0 3030 0 KEEP NA Mir1932 YES UVC_1 chr11 12153718 12153718 A G exonic Cobl nonsynonymous SNV NM_001282993:c.T2911C:p.S971P exonic Cobl nonsynonymous SNV uc011xrp.1:c.T1339C:p.S447P exonic ENSMUSG00000020173 nonsynonymous SNV ENSMUST00000109650:c.T2740C:p.S914P 11qA1 NA NA chr11 12153718 CTGxGTG A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 89 0 0 8.05485 0.428571 0.02 -0.061393 4 3 118 87 60 60 0 0 AA 19.834885 66 0 1810 0 KEEP - Cobl NO UVC_1 chr11 4840106 4840106 T A exonic Nefh nonsynonymous SNV NM_010904:c.A2515T:p.T839S exonic Nefh nonsynonymous SNV uc007hvm.1:c.A2515T:p.T839S exonic ENSMUSG00000020396 nonsynonymous SNV ENSMUST00000093369:c.A2515T:p.T839S 11qA1 NA NA chr11 4840106 GAGxCTG T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 186 1 0 28.32135 0.407407 0.02 -0.236775 16 11 453 310 60 60 0 0 TT 41.481426 138 0 3694 0 KEEP - Nefh NO UVC_1 chr11 49327809 49327809 T C exonic Olfr1384 nonsynonymous SNV NM_146472:c.T668C:p.V223A exonic Olfr1384 nonsynonymous SNV uc007iqp.2:c.T668C:p.V223A exonic ENSMUSG00000044170 nonsynonymous SNV ENSMUST00000060434:c.T668C:p.V223A 11qB1.2 NA NA chr11 49327809 CAGxGTT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 58 2 0 9.696679 0.5 0.02 -0.07013 4 4 114 102 60 60 0 0 TT 12.929227 43 0 1153 0 KEEP + Olfr1384 NO UVC_1 chr11 49337939 49337939 G A exonic Olfr1383 nonsynonymous SNV NM_207574:c.G713A:p.G238E exonic Olfr1383 nonsynonymous SNV uc007iqq.1:c.G713A:p.G238E exonic ENSMUSG00000057767 nonsynonymous SNV ENSMUST00000077143:c.G713A:p.G238E 11qB1.2 "Score=0.95828;Name=No.12948,chr11:51945016" NA chr11 49337939 TGGxGAC G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 58 0 0 13.145269 0.416667 0.02 -0.105233 7 5 198 143 60 60 0 0 GG 12.031861 40 0 1119 0 KEEP + Olfr1383 YES UVC_1 chr11 53384103 53384103 C T exonic Kif3a synonymous SNV NM_008443:c.C72T:p.L24L exonic Kif3a synonymous SNV uc007iwl.1:c.C72T:p.L24L exonic ENSMUSG00000018395 synonymous SNV ENSMUST00000057330:c.C72T:p.L24L 11qB1.3 NA NA chr11 53384103 TCTxAAT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 68 0 0 10.176847 0.363636 0.02 -0.096468 7 4 204 114 60 60 0 0 CC 14.439421 48 0 1369 0 KEEP + Kif3a YES UVC_1 chr11 58891768 58891768 C T exonic Obscn nonsynonymous SNV NM_001171512:c.G7507A:p.V2503I exonic Obscn nonsynonymous SNV uc007jdb.2:c.G7507A:p.V2503I exonic ENSMUSG00000061462 nonsynonymous SNV ENSMUST00000133040:c.G601A:p.V201I 11qB1.3 NA NA chr11 58891768 TGAxCAG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 130 0 0 21.598827 0.5 0.02 -0.140307 8 8 224 226 60 60 0 0 CC 29.773329 99 0 2709 0 KEEP - Obscn YES UVC_1 chr11 60000340 60000340 A C exonic Rai1 nonsynonymous SNV NM_001037764:c.A1727C:p.D576A exonic Rai1 nonsynonymous SNV uc007jfl.1:c.A1727C:p.D576A exonic ENSMUSG00000062115 nonsynonymous SNV ENSMUST00000090806:c.A1727C:p.D576A 11qB2 NA NA chr11 60000340 GGGxCTG A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 215 4 0 7.083147 0.230769 0.02 -0.113948 10 3 258 87 60 60 0 0 AA 45.126129 151 0 3788 0 KEEP + Rai1 NO UVC_1 chr11 61263794 61263794 C G intronic Rnf112 NA NA intronic Rnf112 NA NA intronic ENSMUSG00000010086 NA NA 11qB2 NA NA chr11 61263794 AGGxCGG C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 195 0 0 11.857231 0.217391 0.02 -0.201702 18 5 515 147 60 60 0 0 CC 45.387752 151 0 4098 0 KEEP - Rnf112 NO UVC_1 chr11 61264471 61264471 T G intronic Rnf112 NA NA exonic Rnf112 nonsynonymous SNV uc007jhk.1:c.A1008C:p.Q336H exonic ENSMUSG00000010086 nonsynonymous SNV ENSMUST00000060255:c.A1008C:p.Q336H 11qB2 NA NA chr11 61264471 AAAxTGT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 92 2 0 7.824317 0.5 0.02 -0.06138 3 3 83 82 60 60 0 0 TT 20.748811 69 0 1865 0 KEEP - Rnf112 NO UVC_1 chr11 65035494 65035494 T C intronic Myocd NA NA intronic Myocd NA NA intronic ENSMUSG00000020542 NA NA 11qB3 NA NA chr11 65035494 CACxAAG T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 80 0 0 10.722934 0.444444 0.02 -0.078926 5 4 141 115 60 60 0 0 TT 19.250468 64 0 1783 0 KEEP - Myocd NO UVC_1 chr11 65761077 65761077 A G exonic Dnah9 nonsynonymous SNV NM_001099633:c.T9395C:p.L3132P exonic Dnahc9 nonsynonymous SNV uc007jlg.1:c.T9395C:p.L3132P exonic ENSMUSG00000056752 nonsynonymous SNV ENSMUST00000080665:c.T9395C:p.L3132P 11qB3 NA NA chr11 65761077 ATCxGGG A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 197 0 0 10.637224 0.333333 0.02 -0.131503 10 5 283 124 60 60 0 0 AA 43.602151 145 0 3982 0 KEEP - Dnah9 NO UVC_1 chr11 70134569 70134569 T C exonic Alox12e synonymous SNV NM_145684:c.A615G:p.K205K exonic Alox12e synonymous SNV uc007jun.1:c.A615G:p.K205K exonic ENSMUSG00000018907 synonymous SNV ENSMUST00000019051:c.A615G:p.K205K 11qB3 NA NA chr11 70134569 TACxTTC T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 80 0 0 20.106216 0.636364 0.02 -0.096465 4 7 115 199 60 60 0 0 TT 16.53664 55 0 1527 0 KEEP - Alox12e NO UVC_1 chr11 75125784 75125784 G A intronic Rpa1 NA NA intronic Rpa1 NA NA intronic ENSMUSG00000000751 NA NA 11qB5 NA NA chr11 75125784 GCTxAGT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 98 0 0 7.824392 0.5 0.02 -0.070147 3 3 83 82 60 60 0 0 GG 24.357949 81 0 2295 0 KEEP - Rpa1 YES UVC_1 chr11 78127091 78127091 A C exonic Spag5 nonsynonymous SNV NM_017407:c.A1595C:p.K532T exonic Spag5 nonsynonymous SNV uc007kiv.2:c.A1595C:p.K532T exonic ENSMUSG00000002055 nonsynonymous SNV ENSMUST00000045026:c.A1595C:p.K532T 11qB5 NA NA chr11 78127091 TCAxAAC A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 71 0 0 13.045734 0.416667 0.02 -0.105223 7 5 192 142 60 60 0 0 AA 15.938028 53 0 1459 0 KEEP + Spag5 NO UVC_1 chr11 84771348 84771348 G A UTR5 Car4 NA NA UTR5 Car4 NA NA UTR5 ENSMUSG00000000805 NA NA 11qC NA NA chr11 84771348 GGTxATT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 138 0 0 9.784687 0.4 0.02 -0.087688 6 4 172 108 60 60 0 0 GG 30.984899 103 0 2946 0 KEEP + Car4 YES UVC_1 chr11 93790929 93790929 T A exonic Mbtd1 nonsynonymous SNV NM_134012:c.T1235A:p.V412E exonic Mbtd1 nonsynonymous SNV uc007kxo.2:c.T1235A:p.V412E exonic ENSMUSG00000059474 nonsynonymous SNV ENSMUST00000063645:c.T1235A:p.V412E 11qD NA NA chr11 93790929 AGGxGCT T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 DBSNP COVERED 0.196312 0.196312 1 118 0 1 6.982417 0.230769 0.02 -0.113998 10 3 277 86 60 60 0 0 TT 27.352949 91 0 2405 0 KEEP + Mbtd1 NO UVC_1 chr11 95831174 95831174 C G exonic Igf2bp1 nonsynonymous SNV NM_009951:c.G1066C:p.A356P exonic Igf2bp1 nonsynonymous SNV uc007lay.2:c.G1066C:p.A356P exonic ENSMUSG00000013415 nonsynonymous SNV ENSMUST00000013559:c.G1066C:p.A356P 11qD NA NA chr11 95831174 CGGxCAC C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 152 1 0 10.391804 0.333333 0.02 -0.105224 8 4 221 118 60 60 0 0 CC 31.147853 104 0 2816 0 KEEP - Igf2bp1 NO UVC_1 chr11 98286584 98286584 T G intronic Erbb2 NA NA intronic Erbb2 NA NA intronic ENSMUSG00000062312 NA NA 11qD NA NA chr11 98286584 GAGxTTG T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139826 0.139832 0.999957 45 1 0 15.948923 0.5 0.02 -0.105227 6 6 167 167 60 60 0 0 TT 5.954701 25 1 686 14 KEEP + Erbb2 NO UVC_1 chr11 98771980 98771980 G T exonic Cdc6 nonsynonymous SNV NM_001025779:c.G555T:p.R185S exonic Cdc6 nonsynonymous SNV uc007lhu.1:c.G555T:p.R185S exonic ENSMUSG00000017499 nonsynonymous SNV ENSMUST00000092706:c.G555T:p.R185S 11qD NA NA chr11 98771980 CAGxAAT G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 86 0 0 20.465507 0.777778 0.02 -0.078921 2 7 59 192 60 60 0 0 GG 19.251423 64 0 1807 0 KEEP + Cdc6 NO UVC_1 chr11 99402655 99402655 T G exonic Krt40 nonsynonymous SNV NM_001039666:c.A543C:p.E181D exonic Krt40 nonsynonymous SNV uc007liy.1:c.A543C:p.E181D exonic ENSMUSG00000059169 nonsynonymous SNV ENSMUST00000074253:c.A543C:p.E181D 11qD NA NA chr11 99402655 CAGxTCG T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 79 0 0 7.354401 0.428571 0.02 -0.061379 4 3 112 80 60 60 0 0 TT 19.844851 66 0 1798 0 KEEP - Krt40 NO UVC_1 chr12 55995331 55995331 C G exonic Baz1a nonsynonymous SNV NM_013815:c.G4620C:p.Q1540H exonic Baz1a nonsynonymous SNV uc007nnz.2:c.G4620C:p.Q1540H exonic ENSMUSG00000035021 nonsynonymous SNV ENSMUST00000038926:c.G4629C:p.Q1543H 12qC1 NA NA chr12 55995331 AACxTGG C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 155 3 6 6.582349 0.230769 0.02 -0.114003 10 3 287 82 60 37 0 0 CC 32.487746 108 0 3069 0 KEEP - Baz1a NO UVC_1 chr12 71557175 71557175 G T intronic Tmx1 NA NA intronic Tmx1 NA NA intronic ENSMUSG00000021072 NA NA 12qC2 NA NA chr12 71557175 TTTxTTA G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024022 0.024074 0.997832 24 0 0 16.281983 1 0.02 -0.043845 0 5 0 139 0 60 0 0 GG 4.811861 16 0 434 0 KEEP + Tmx1 NO UVC_1 chr12 83019298 83019298 T C exonic Pcnx synonymous SNV NM_018814:c.T1251C:p.S417S exonic Pcnx synonymous SNV uc007ocq.1:c.T1251C:p.S417S exonic ENSMUSG00000021140 synonymous SNV ENSMUST00000021567:c.T1251C:p.S417S 12qD1 NA NA chr12 83019298 GTCxGAG T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 68 0 0 6.965433 0.6 0.02 -0.043816 2 3 57 70 60 60 0 0 TT 14.437573 48 0 1332 0 KEEP + Pcnx NO UVC_1 chr12 83596484 83596484 T G intergenic "Sipa1l1(dist=43713),Rgs6(dist=121541)" NA NA intergenic "Sipa1l1(dist=43713),Rgs6(dist=121541)" NA NA intergenic "ENSMUSG00000042700(dist=43715),ENSMUSG00000084705(dist=89861)" NA NA 12qD1 "Score=0.97273;Name=No.25996,chr12:92794346" NA chr12 83596484 AAAxTTC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 95 0 0 10.799413 0.5 0.02 -0.070153 4 4 111 113 60 60 0 0 TT 24.031089 80 0 2163 0 KEEP NA Sipa1l1 NO UVC_1 chr12 86169381 86169381 T C intronic Ltbp2 NA NA intronic Ltbp2 NA NA intronic ENSMUSG00000002020 NA NA 12qD2 NA NA chr12 86169381 ATCxTGA T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 52 0 0 10.822799 0.444444 0.02 -0.078932 5 4 146 116 60 60 0 0 TT 9.321455 31 0 861 0 KEEP - Ltbp2 NO UVC_1 chr12 86630938 86630938 C G exonic Zc2hc1c nonsynonymous SNV NM_172414:c.C418G:p.P140A exonic Fam164c nonsynonymous SNV uc007ogw.2:c.C418G:p.P140A exonic ENSMUSG00000045064 nonsynonymous SNV ENSMUST00000059341:c.C418G:p.P140A 12qD2 NA NA chr12 86630938 TACxCAC C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 47 0 0 13.96711 1 0.02 -0.043743 0 5 0 116 0 60 0 0 CC 11.427063 38 0 1059 0 KEEP + Zc2hc1c NO UVC_1 chr13 103525980 103525980 T G exonic Mast4 nonsynonymous SNV NM_175171:c.A6959C:p.K2320T exonic Mast4 nonsynonymous SNV uc007rsb.2:c.A6959C:p.K2320T exonic ENSMUSG00000034751 nonsynonymous SNV ENSMUST00000171791:c.A6383C:p.K2128T 13qD1 NA NA chr13 103525980 GGCxTCT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 156 2 0 14.910413 0.388889 0.02 -0.157786 11 7 315 168 60 60 0 0 TT 34.555114 115 0 3171 0 KEEP - Mast4 NO UVC_1 chr13 109461179 109461179 A G intronic Pde4d NA NA intronic Pde4d NA NA exonic ENSMUSG00000059751 nonsynonymous SNV ENSMUST00000074680:c.A383G:p.K128R 13qD2.1 NA NA chr13 109461179 TCAxGAC A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 257 0 0 49.798806 0.68 0.02 -0.219246 8 17 234 485 60 60 0 0 AA 57.446748 191 0 5345 0 KEEP + Pde4d NO UVC_1 chr13 117700169 117700169 T C intronic Parp8 NA NA intronic Parp8 NA NA intronic ENSMUSG00000021725 NA NA 13qD2.3 NA NA chr13 117700169 TCAxATT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999997 40 0 0 10.631058 0.571429 0.02 -0.061375 3 4 80 108 60 60 0 0 TT 8.7185 29 0 769 0 KEEP - Parp8 NO UVC_1 chr13 21559275 21559275 T C exonic Nkapl nonsynonymous SNV NM_025719:c.A1036G:p.R346G exonic Nkapl nonsynonymous SNV uc007pqm.2:c.A1036G:p.R346G exonic ENSMUSG00000059395 nonsynonymous SNV ENSMUST00000068235:c.A1036G:p.R346G 13qA3.1 NA NA chr13 21559275 GTCxTAC T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 138 1 0 6.610893 0.166667 0.02 -0.157859 15 3 431 87 60 60 0 0 TT 29.778811 99 0 2773 0 KEEP - Nkapl NO UVC_1 chr13 21703159 21703159 C T exonic Olfr1362 synonymous SNV NM_146744:c.G678A:p.L226L exonic Olfr1362 synonymous SNV uc007pqv.1:c.G678A:p.L226L exonic ENSMUSG00000051258 synonymous SNV ENSMUST00000051874:c.G678A:p.L226L 13qA3.1 NA NA chr13 21703159 CCTxAGC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.02407 0.024074 0.99986 29 0 0 8.268739 0.6 0.02 -0.043847 2 3 58 83 60 60 0 0 CC 5.715675 19 0 543 0 KEEP - Olfr1362 YES UVC_1 chr13 31039342 31039342 C T exonic Hus1b nonsynonymous SNV NM_153072:c.G202A:p.G68S exonic Hus1b nonsynonymous SNV uc007pzf.1:c.G202A:p.G68S exonic ENSMUSG00000076430 nonsynonymous SNV ENSMUST00000102943:c.G202A:p.G68S 13qA3.2 NA NA chr13 31039342 CACxCTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999997 41 0 0 11.848684 0.666667 0.02 -0.052622 2 4 59 116 60 60 0 0 CC 8.722945 29 0 812 0 KEEP - Hus1b YES UVC_1 chr13 33763263 33763263 T G exonic Serpinb6d synonymous SNV NM_001076790:c.T1050G:p.T350T exonic Serpinb6d synonymous SNV uc007qak.1:c.T1050G:p.T350T exonic ENSMUSG00000047889 synonymous SNV ENSMUST00000059637:c.T1050G:p.T350T 13qA3.3 NA NA chr13 33763263 CACxTTC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 198 0 0 14.500091 0.304348 0.02 -0.201644 16 7 456 173 60 60 0 0 TT 42.408128 141 0 3927 0 KEEP + Serpinb6d NO UVC_1 chr13 3853553 3853553 T G intronic Calm5 NA NA intronic Calm5 NA NA ncRNA_exonic ENSMUSG00000060343 NA NA 13qA1 "Score=0.940247;Name=No.32583,chr13:3832156" NA chr13 3853553 TACxTCA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 DBSNP UNCOVERED 0.043787 0.043787 1 72 0 0 7.053576 0.428571 0.02 -0.061378 4 3 119 77 60 60 0 0 TT 16.24313 54 0 1515 0 KEEP + Calm5 NO UVC_1 chr13 41146801 41146801 A C exonic Mak nonsynonymous SNV NM_001145802:c.T336G:p.D112E exonic Mak nonsynonymous SNV uc007qev.2:c.T429G:p.D143E exonic ENSMUSG00000021363 nonsynonymous SNV ENSMUST00000021792:c.T429G:p.D143E 13qA3.3 NA NA chr13 41146801 AAAxTCA A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 62 0 0 7.654768 0.428571 0.02 -0.061382 4 3 111 83 60 60 0 0 AA 13.835793 46 0 1273 0 KEEP - Mak NO UVC_1 chr13 43466100 43466100 A C UTR5 Sirt5 NA NA UTR5 Sirt5 NA NA UTR5 ENSMUSG00000054021 NA NA 13qA4 NA NA chr13 43466100 GGAxGTA A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 135 0 0 6.473449 0.214286 0.02 -0.122769 11 3 311 82 60 60 0 0 AA 30.979032 103 0 2847 0 KEEP + Sirt5 NO UVC_1 chr13 45634432 45634432 C T exonic Gmpr synonymous SNV NM_025508:c.C693T:p.A231A exonic Gmpr synonymous SNV uc007qha.1:c.C693T:p.A231A exonic ENSMUSG00000000253 synonymous SNV ENSMUST00000000260:c.C693T:p.A231A 13qA5 NA NA chr13 45634432 AGCxTTT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 57 0 0 11.548249 0.666667 0.02 -0.05262 2 4 60 113 60 60 0 0 CC 11.731635 39 0 1105 0 KEEP + Gmpr YES UVC_1 chr13 45634434 45634434 T C exonic Gmpr nonsynonymous SNV NM_025508:c.T695C:p.F232S exonic Gmpr nonsynonymous SNV uc007qha.1:c.T695C:p.F232S exonic ENSMUSG00000000253 nonsynonymous SNV ENSMUST00000000260:c.T695C:p.F232S 13qA5 NA NA chr13 45634434 CCTxTGG T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 55 0 0 11.448377 0.666667 0.02 -0.052612 2 4 55 112 60 60 0 0 TT 11.129345 37 0 1036 0 KEEP + Gmpr NO UVC_1 chr13 48918433 48918433 T C exonic Phf2 nonsynonymous SNV NM_011078:c.A674G:p.D225G exonic Phf2 nonsynonymous SNV uc007qim.1:c.A323G:p.D108G exonic ENSMUSG00000038025 nonsynonymous SNV ENSMUST00000035540:c.A674G:p.D225G 13qA5 NA NA chr13 48918433 GCGxCAT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 85 0 0 10.291395 0.333333 0.02 -0.10524 8 4 229 117 60 60 0 0 TT 17.118134 60 1 1646 8 KEEP - Phf2 NO UVC_1 chr13 49900740 49900740 T G intergenic "Iars(dist=71104),Gm906(dist=439810)" NA NA intergenic "Iars(dist=71104),DQ546002(dist=85226)" NA NA exonic ENSMUSG00000069236 nonsynonymous SNV ENSMUST00000091621:c.A581C:p.K194T 13qA5 "Score=0.962249;Name=No.37287,chr3:142625501,No.38544,chr6:83824192" NA chr13 49900740 AGCxTTC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 252 3 2 18.402902 0.636364 0.02 -0.10521 4 7 116 182 60 60 0 0 TT 62.617794 212 1 5874 10 KEEP NA Iars NO UVC_1 chr13 51568146 51568146 A G intronic Shc3 NA NA intronic Shc3 NA NA intronic ENSMUSG00000021448 NA NA 13qA5 NA NA chr13 51568146 GCAxGAG A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 94 2 0 7.843676 0.333333 0.02 -0.078927 6 3 168 89 60 60 0 0 AA 18.34793 61 0 1709 0 KEEP - Shc3 NO UVC_1 chr13 55115869 55115869 C T exonic Hk3 synonymous SNV NM_001206392:c.G282A:p.L94L exonic Hk3 synonymous SNV uc007qpu.1:c.G282A:p.L94L exonic ENSMUSG00000025877 synonymous SNV ENSMUST00000153665:c.G282A:p.L94L 13qB1 NA NA chr13 55115869 ATCxAGG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 71 1 0 13.878564 0.428571 0.02 -0.122354 8 6 230 152 60 60 0 0 CC 13.837983 46 0 1316 0 KEEP - Hk3 YES UVC_1 chr13 61105900 61105900 A G exonic Ctsj synonymous SNV NM_012007:c.T12C:p.T4T exonic Ctsj synonymous SNV uc007qwa.1:c.T12C:p.T4T exonic ENSMUSG00000055298 synonymous SNV ENSMUST00000071526:c.T12C:p.T4T 13qB2 NA NA chr13 61105900 GACxGTA A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 56 0 0 6.572743 0.2 0.02 -0.140323 12 3 351 84 60 60 0 0 AA 11.129298 37 0 1033 0 KEEP - Ctsj NO UVC_1 chr13 64889173 64889173 T A exonic Cntnap3 stopgain SNV NM_001081129:c.A1183T:p.K395X exonic Cntnap3 stopgain SNV uc007qyz.1:c.A1183T:p.K395X exonic ENSMUSG00000033063 stopgain SNV ENSMUST00000091554:c.A1183T:p.K395X 13qB3 NA NA chr13 64889173 TTTxATC T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 76 0 0 19.305564 0.636364 0.02 -0.096454 4 7 111 191 60 60 0 0 TT 16.842162 56 0 1530 0 KEEP - Cntnap3 NO UVC_1 chr13 73626544 73626544 G A exonic Lpcat1 stopgain SNV NM_145376:c.G488A:p.W163X exonic Lpcat1 stopgain SNV uc007rdk.1:c.G488A:p.W163X exonic ENSMUSG00000021608 stopgain SNV ENSMUST00000022099:c.G488A:p.W163X 13qC1 NA NA chr13 73626544 TCTxGGG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 88 0 0 16.048944 0.5 0.02 -0.105232 6 6 169 168 60 60 0 0 GG 16.846582 56 0 1609 0 KEEP + Lpcat1 YES UVC_1 chr13 73626545 73626545 G A exonic Lpcat1 stopgain SNV NM_145376:c.G489A:p.W163X exonic Lpcat1 stopgain SNV uc007rdk.1:c.G489A:p.W163X exonic ENSMUSG00000021608 stopgain SNV ENSMUST00000022099:c.G489A:p.W163X 13qC1 NA NA chr13 73626545 CTGxGGA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 88 0 0 16.849645 0.5 0.02 -0.105239 6 6 169 176 60 60 0 0 GG 16.844354 56 0 1567 0 KEEP + Lpcat1 YES UVC_1 chr13 8569135 8569135 A C exonic Adarb2 nonsynonymous SNV NM_052977:c.A410C:p.K137T exonic Adarb2 nonsynonymous SNV uc007pkf.1:c.A410C:p.K137T exonic ENSMUSG00000052551 nonsynonymous SNV ENSMUST00000165942:c.A311C:p.K104T 13qA1 NA NA chr13 8569135 TGAxGCC A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077325 0.077336 0.999869 33 0 0 6.642537 0.333333 0.02 -0.078904 6 3 168 77 60 60 0 0 AA 6.31572 21 0 580 0 KEEP + Adarb2 NO UVC_1 chr13 93865711 93865711 G T exonic Cmya5 nonsynonymous SNV NM_023821:c.C2823A:p.D941E exonic Cmya5 nonsynonymous SNV uc007rkw.2:c.C2607A:p.D869E exonic ENSMUSG00000047419 nonsynonymous SNV ENSMUST00000062122:c.C2823A:p.D941E 13qC3 NA NA chr13 93865711 CATxTCA G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 99 2 0 12.339165 0.333333 0.02 -0.131538 10 5 280 141 60 60 0 0 GG 21.645196 72 0 2003 0 KEEP - Cmya5 NO UVC_1 chr13 93865749 93865749 T G exonic Cmya5 nonsynonymous SNV NM_023821:c.A2785C:p.N929H exonic Cmya5 nonsynonymous SNV uc007rkw.2:c.A2569C:p.N857H exonic ENSMUSG00000047419 nonsynonymous SNV ENSMUST00000062122:c.A2785C:p.N929H 13qC3 NA NA chr13 93865749 CATxTTG T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 115 2 0 9.471314 0.285714 0.02 -0.122768 10 4 281 112 60 60 0 0 TT 25.518803 85 0 2332 0 KEEP - Cmya5 NO UVC_1 chr13 97912003 97912003 G A intronic Gfm2 NA NA intronic Gfm2 NA NA intronic ENSMUSG00000021666 NA NA 13qD1 NA NA chr13 97912003 CTAxTTA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 69 0 0 6.978539 0.3 0.02 -0.087691 7 3 198 82 60 60 0 0 GG 15.337774 51 0 1384 0 KEEP + Gfm2 YES UVC_1 chr14 121674594 121674594 C A intronic Farp1 NA NA intronic Farp1 NA NA intronic ENSMUSG00000025555 NA NA 14qE5 NA NA chr14 121674594 CTGxAGG C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999999 50 0 0 28.478346 0.9 0.02 -0.087696 1 9 29 256 60 60 0 0 CC 10.507324 35 0 955 0 KEEP + Farp1 NO UVC_1 chr14 20587852 20587852 G T exonic Nid2 synonymous SNV NM_008695:c.G1191T:p.R397R exonic Nid2 synonymous SNV uc007sit.1:c.G1191T:p.R397R exonic ENSMUSG00000021806 synonymous SNV ENSMUST00000022340:c.G1191T:p.R397R 14qA3 NA NA chr14 20587852 GCGxCCG G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 72 0 0 8.024377 0.5 0.02 -0.052617 3 3 86 84 60 60 0 0 GG 15.963389 55 1 1502 5 KEEP + Nid2 NO UVC_1 chr14 22839052 22839052 C G UTR5 1700112E06Rik NA NA UTR5 1700112E06Rik NA NA UTR5 ENSMUSG00000063458 NA NA 14qA3 NA NA chr14 22839052 GCGxCGC C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 68 1 0 23.836126 1 0.02 -0.061392 0 7 0 205 0 60 0 0 CC 13.828102 46 0 1223 0 KEEP + 1700112E06Rik NO UVC_1 chr14 31832077 31832077 A G intronic Gnl3 NA NA intronic Gnl3 NA NA intronic ENSMUSG00000042354 NA NA 14qB NA NA chr14 31832077 ACAxAGC A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 164 0 0 34.948619 0.916667 0.02 -0.105231 1 11 28 312 60 60 0 0 AA 34.883254 116 0 3176 0 KEEP - Gnl3 NO UVC_1 chr14 32084721 32084721 C T exonic Dnah1 synonymous SNV NM_001033668:c.G8688A:p.K2896K exonic Dnahc1 synonymous SNV uc007sxk.2:c.G8688A:p.K2896K exonic ENSMUSG00000019027 synonymous SNV ENSMUST00000048603:c.G8688A:p.K2896K 14qB NA NA chr14 32084721 ATCxTTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999998 53 0 0 40.51875 1 0.02 -0.105241 0 12 0 348 0 60 0 0 CC 10.215573 34 0 948 0 KEEP - Dnah1 YES UVC_1 chr14 47683966 47683966 G A exonic Samd4 nonsynonymous SNV NM_001163433:c.G748A:p.E250K exonic Samd4 nonsynonymous SNV uc007thp.1:c.G787A:p.E263K exonic ENSMUSG00000021838 nonsynonymous SNV ENSMUST00000137543:c.G787A:p.E263K 14qC1 NA NA chr14 47683966 GAGxAAA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 0.999997 42 0 0 12.220527 0.8 0.02 -0.043848 1 4 28 114 60 60 0 0 GG 9.620716 32 0 900 0 KEEP + Samd4 YES UVC_1 chr14 47894385 47894385 C G intronic Wdhd1 NA NA intronic Wdhd1 NA NA intronic ENSMUSG00000037572 NA NA 14qC1 NA NA chr14 47894385 ATGxCCA C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 120 0 0 27.961098 0.75 0.02 -0.105246 3 9 88 266 60 60 0 0 CC 28.551336 95 0 2571 0 KEEP - Wdhd1 NO UVC_1 chr14 61825313 61825313 G A intronic Sacs NA NA intronic Sacs NA NA exonic ENSMUSG00000048279 nonsynonymous SNV ENSMUST00000074447:c.G5970A:p.M1990I 14qD1 NA NA chr14 61825313 CATxAAG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 63 0 0 15.209211 0.833333 0.02 -0.052616 1 5 29 140 60 60 0 0 GG 15.642849 52 0 1486 0 KEEP + Sacs YES UVC_1 chr14 63666444 63666444 C T exonic Defb42 nonsynonymous SNV NM_001034910:c.C44T:p.S15L exonic Defb42 nonsynonymous SNV uc007uhf.2:c.C44T:p.S15L exonic ENSMUSG00000054763 nonsynonymous SNV ENSMUST00000067990:c.C44T:p.S15L 14qD1 NA NA chr14 63666444 CATxATT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 123 0 0 6.432317 0.272727 0.02 -0.096455 8 3 229 78 60 60 0 0 CC 28.276277 94 0 2690 0 KEEP + Defb42 YES UVC_1 chr14 66005267 66005267 T G exonic Zfp395 nonsynonymous SNV NM_199029:c.T347G:p.I116S exonic Zfp395 nonsynonymous SNV uc007ujg.2:c.T347G:p.I116S exonic;splicing ENSMUSG00000034522;ENSMUSG00000034522(ENSMUST00000091349:exon3:c.384+2T>G) nonsynonymous SNV ENSMUST00000066994:c.T347G:p.I116S 14qD1 NA NA chr14 66005267 AGAxTCG T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 72 4 0 7.432576 0.375 0.02 -0.07892 5 3 139 83 60 60 0 0 TT 12.848048 47 1 1257 11 KEEP + Zfp395 NO UVC_1 chr14 69792867 69792867 C G exonic Nkx2-6 nonsynonymous SNV NM_010920:c.C426G:p.F142L exonic Nkx2-6 nonsynonymous SNV uc007umb.2:c.C135G:p.F45L exonic ENSMUSG00000044186 nonsynonymous SNV ENSMUST00000062437:c.C426G:p.F142L 14qD2 NA NA chr14 69792867 CTTxAAG C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999931 31 0 0 6.552865 1 0.02 -0.017538 0 2 0 56 0 60 0 0 CC 7.520604 25 0 715 0 KEEP + Nkx2-6 NO UVC_1 chr15 101477571 101477571 T G ncRNA_exonic Gm5478 NA NA ncRNA_exonic Gm5478 NA NA intergenic "ENSMUSG00000064232(dist=18952),ENSMUSG00000023041(dist=28894)" NA NA 15qF2 NA NA chr15 101477571 AGAxCCT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043781 0.043787 0.999869 31 1 0 11.531822 0.571429 0.02 -0.061388 3 4 83 117 37 60 0 0 TT 6.316119 21 0 577 0 KEEP - Gm5478 NO UVC_1 chr15 101943787 101943787 C T exonic Tenc1 stopgain SNV NM_153533:c.C3352T:p.Q1118X exonic Tenc1 stopgain SNV uc011zzx.1:c.C1858T:p.Q620X exonic ENSMUSG00000037003 stopgain SNV ENSMUST00000046144:c.C3373T:p.Q1125X 15qF3 NA NA chr15 101943787 AACxAAA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 81 4 0 8.257044 0.4 0.02 -0.087273 6 4 171 93 60 60 0 0 CC 18.327323 61 0 1678 0 KEEP + Tenc1 YES UVC_1 chr15 102189720 102189720 C T exonic Sp7 synonymous SNV NM_130458:c.G135A:p.K45K exonic Sp7 synonymous SNV uc007xvm.1:c.G135A:p.K45K exonic ENSMUSG00000060284 synonymous SNV ENSMUST00000078508:c.G135A:p.K45K 15qF3 NA NA chr15 102189720 CTTxTTT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 113 2 0 33.890794 0.631579 0.02 -0.166617 7 12 201 336 60 60 0 0 CC 24.066585 80 0 2297 0 KEEP - Sp7 YES UVC_1 chr15 102888886 102888886 T G intergenic "Hoxc4(dist=21603),D930007P13Rik(dist=64615)" NA NA intergenic "Hoxc4(dist=21603),Smug1(dist=94835)" NA NA intergenic "ENSMUSG00000075394(dist=21612),ENSMUSG00000086435(dist=64615)" NA NA 15qF3 NA NA chr15 102888886 TGCxGAA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036762 0.036766 0.999892 32 0 0 9.74301 0.666667 0.02 -0.052577 2 4 60 95 60 60 0 0 TT 6.918056 23 0 639 0 KEEP NA Hoxc4 NO UVC_1 chr15 50663165 50663165 A G exonic Trps1 nonsynonymous SNV NM_032000:c.T1267C:p.S423P exonic Trps1 nonsynonymous SNV uc011zst.1:c.T406C:p.S136P exonic ENSMUSG00000038679 nonsynonymous SNV ENSMUST00000079553:c.T1144C:p.S382P 15qC NA NA chr15 50663165 GTGxGGA A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16246 0.162467 0.999957 44 0 0 7.282182 0.230769 0.02 -0.114013 10 3 290 89 60 60 0 0 AA 7.81728 26 0 718 0 KEEP - Trps1 NO UVC_1 chr15 71783031 71783031 A C intronic Col22a1 NA NA intronic Col22a1 NA NA intronic ENSMUSG00000079022 NA NA 15qD3 NA NA chr15 71783031 ACCxATT A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 41 0 0 7.843729 0.333333 0.02 -0.078925 6 3 166 89 60 60 0 0 AA 9.021788 30 0 816 0 KEEP - Col22a1 NO UVC_1 chr15 75504773 75504773 C A exonic Top1mt nonsynonymous SNV NM_028404:c.G288T:p.E96D exonic Top1mt nonsynonymous SNV uc007whb.1:c.G288T:p.E96D exonic ENSMUSG00000000934 nonsynonymous SNV ENSMUST00000000958:c.G288T:p.E96D 15qD3 NA NA chr15 75504773 ACAxTCA C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053793 0.054137 0.993634 21 0 0 7.432606 0.375 0.02 -0.070151 5 3 139 83 60 60 0 0 CC 3.609241 12 0 331 0 KEEP - Top1mt NO UVC_1 chr15 75504774 75504774 T C exonic Top1mt nonsynonymous SNV NM_028404:c.A287G:p.E96G exonic Top1mt nonsynonymous SNV uc007whb.1:c.A287G:p.E96G exonic ENSMUSG00000000934 nonsynonymous SNV ENSMUST00000000958:c.A287G:p.E96G 15qD3 NA NA chr15 75504774 CACxCAA T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.053793 0.054137 0.993634 21 0 0 7.332283 0.375 0.02 -0.070158 5 3 147 82 60 60 0 0 TT 3.609591 12 0 336 0 KEEP - Top1mt NO UVC_1 chr15 76492524 76492524 C T intronic Kifc2 NA NA intronic Kifc2 NA NA intronic ENSMUSG00000004187 NA NA 15qD3 NA NA chr15 76492524 TCTxTGT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 57 0 0 10.422455 0.444444 0.02 -0.078929 5 4 147 112 60 60 0 0 CC 12.929683 43 0 1203 0 KEEP + Kifc2 YES UVC_1 chr15 77545670 77545670 C T exonic "Apol7b,Apol7e" nonsynonymous SNV NM_001024848:c.C214T:p.L72F exonic Apol7e nonsynonymous SNV uc007wnx.1:c.C214T:p.L72F exonic ENSMUSG00000071716 nonsynonymous SNV ENSMUST00000096358:c.C214T:p.L72F 15qE1 "Score=0.973609;Name=No.57805,chr15:77228213" NA chr15 77545670 GAGxTCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 150 1 48 7.732619 0.375 0.02 -0.07016 5 3 145 86 37 37 0 0 CC 31.583654 105 0 2956 0 KEEP + Apol7b YES UVC_1 chr15 77545672 77545672 C T exonic "Apol7b,Apol7e" synonymous SNV NM_001024848:c.C216T:p.L72L exonic Apol7e synonymous SNV uc007wnx.1:c.C216T:p.L72L exonic ENSMUSG00000071716 synonymous SNV ENSMUST00000096358:c.C216T:p.L72L 15qE1 "Score=0.973609;Name=No.57805,chr15:77228213" NA chr15 77545672 GCTxCAA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 151 1 48 7.554429 0.428571 0.02 -0.061387 4 3 117 82 37 37 0 0 CC 31.821997 106 0 2977 0 KEEP + Apol7b YES UVC_1 chr15 78115697 78115697 C T exonic Csf2rb2 nonsynonymous SNV NM_007781:c.G1687A:p.E563K exonic Csf2rb2 nonsynonymous SNV uc011zvm.1:c.G1360A:p.E454K exonic ENSMUSG00000071714 nonsynonymous SNV ENSMUST00000096678:c.G1360A:p.E454K 15qE1 "Score=0.911766;Name=No.57810,chr15:78111728" NA chr15 78115697 ATTxAGA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 90 0 2 14.385423 0.625 0.02 -0.078931 3 5 90 143 60 60 0 0 CC 19.547157 65 0 1801 0 KEEP - Csf2rb2 YES UVC_1 chr15 78734779 78734779 T G intronic Sh3bp1 NA NA intronic Sh3bp1 NA NA intronic ENSMUSG00000022436 NA NA 15qE1 NA NA chr15 78734779 CACxGCC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 101 0 0 6.632318 0.272727 0.02 -0.096459 8 3 231 80 60 60 0 0 TT 24.036435 80 0 2162 0 KEEP + Sh3bp1 NO UVC_1 chr15 79496423 79496423 G A intronic Cby1 NA NA intronic Cby1 NA NA intronic ENSMUSG00000022428 NA NA 15qE1 NA NA chr15 79496423 AGGxAAG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 0.999999 45 1 0 16.582416 1 0.02 -0.043848 0 5 0 142 0 60 0 0 GG 10.223658 34 0 959 0 KEEP + Cby1 YES UVC_1 chr15 86197063 86197063 T G exonic Tbc1d22a nonsynonymous SNV NM_145476:c.T1151G:p.I384S exonic Tbc1d22a nonsynonymous SNV uc007xea.1:c.T1151G:p.I384S exonic ENSMUSG00000051864 nonsynonymous SNV ENSMUST00000063414:c.T1151G:p.I384S 15qE2 NA NA chr15 86197063 GGAxTCA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 86 0 0 7.243388 0.333333 0.02 -0.078921 6 3 168 83 60 60 0 0 TT 16.539104 55 0 1490 0 KEEP + Tbc1d22a NO UVC_1 chr15 88952746 88952746 C T exonic Tubgcp6 nonsynonymous SNV NM_001163319:c.G502A:p.E168K exonic Tubgcp6 nonsynonymous SNV uc007xfh.2:c.G502A:p.E168K exonic ENSMUSG00000051786 nonsynonymous SNV ENSMUST00000041656:c.G502A:p.E168K 15qE3 NA NA chr15 88952746 TCTxCTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 38 0 0 7.732514 0.375 0.02 -0.070163 5 3 149 86 60 60 0 0 CC 8.414456 28 0 768 0 KEEP - Tubgcp6 YES UVC_1 chr15 89249531 89249531 T G exonic Cpt1b nonsynonymous SNV NM_009948:c.A1751C:p.K584T exonic Cpt1b nonsynonymous SNV uc007xgr.1:c.A1751C:p.K584T exonic ENSMUSG00000078937 nonsynonymous SNV ENSMUST00000109313:c.A1751C:p.K584T 15qE3 NA NA chr15 89249531 AACxTGC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 121 1 0 6.32538 0.266667 0.02 -0.130971 11 4 312 82 60 60 0 0 TT 25.826307 86 0 2342 0 KEEP - Cpt1b NO UVC_1 chr15 91526773 91526773 G A exonic Lrrk2 nonsynonymous SNV NM_025730:c.G777A:p.M259I exonic Lrrk2 nonsynonymous SNV uc007xhz.1:c.G777A:p.M259I exonic ENSMUSG00000036273 nonsynonymous SNV ENSMUST00000060642:c.G777A:p.M259I 15qE3 NA NA chr15 91526773 CATxAAA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 77 0 0 14.76508 0.375 0.02 -0.140302 10 6 282 165 60 60 0 0 GG 15.041801 50 0 1439 0 KEEP + Lrrk2 YES UVC_1 chr15 97584188 97584188 A G intronic Rapgef3 NA NA intronic Rapgef3 NA NA intronic ENSMUSG00000022469 NA NA 15qF1 NA NA chr15 97584188 CTCxGAC A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 85 0 0 7.030511 0.266667 0.02 -0.131498 11 4 322 89 60 60 0 0 AA 18.031052 60 0 1641 0 KEEP - Rapgef3 NO UVC_1 chr15 97584362 97584362 G C intronic Rapgef3 NA NA intronic Rapgef3 NA NA intronic ENSMUSG00000022469 NA NA 15qF1 NA NA chr15 97584362 AGAxGAG G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 115 2 0 23.425776 0.434783 0.02 -0.20163 13 10 372 255 60 60 0 0 GG 22.558396 75 0 2094 0 KEEP - Rapgef3 NO UVC_1 chr15 98683429 98683429 G A exonic Kmt2d synonymous SNV NM_001033276:c.C6813T:p.P2271P exonic Mll2 synonymous SNV uc007xoc.2:c.C6813T:p.P2271P exonic ENSMUSG00000048154 synonymous SNV ENSMUST00000023741:c.C6813T:p.P2271P 15qF1 NA NA chr15 98683429 GTGxGGG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 117 1 0 8.91451 0.166667 0.02 -0.219242 20 4 567 117 60 60 0 0 GG 22.242993 74 0 2017 0 KEEP - Kmt2d YES UVC_1 chr16 18029340 18029340 T G intergenic "Vpreb2(dist=48167),Dgcr6(dist=23613)" NA NA ncRNA_exonic AK161355 NA NA intergenic "ENSMUSG00000059280(dist=47974),ENSMUSG00000003531(dist=23613)" NA NA 16qA3 NA NA chr16 18029340 TTCxTCC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 71 2 0 9.118942 0.444444 0.02 -0.078885 5 4 145 99 60 60 0 0 TT 17.745984 59 0 1635 0 KEEP + Vpreb2 NO UVC_1 chr16 19260928 19260928 T G intergenic "Hira(dist=290527),Olfr164(dist=24959)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076940 nonsynonymous SNV ENSMUST00000103752:c.A10C:p.T4P 16qA3 "Score=0.927299;Name=No.61859,chr16:19084113" NA chr16 19260928 AAGxCCA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 113 2 0 10.177011 0.363636 0.02 -0.096462 7 4 196 114 60 60 0 0 TT 25.862713 86 0 2341 0 KEEP - Hira NO UVC_1 chr16 22053889 22053889 G A intergenic "Senp2(dist=4547),Igf2bp2(dist=5193)" NA NA intergenic "Senp2(dist=4547),Igf2bp2(dist=5193)" NA NA ncRNA_exonic ENSMUSG00000068487 NA NA 16qB1 NA NA chr16 22053889 GGAxTGC G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 141 0 0 9.001894 0.25 0.02 -0.140305 12 4 338 110 60 60 0 0 GG 30.579651 102 0 2747 0 KEEP NA Senp2 YES UVC_1 chr16 30273190 30273190 A C exonic Lrrc15 synonymous SNV NM_028973:c.T1416G:p.P472P exonic Lrrc15 synonymous SNV uc007ywn.2:c.T1416G:p.P472P exonic ENSMUSG00000052316 synonymous SNV ENSMUST00000064606:c.T1416G:p.P472P 16qB2 NA NA chr16 30273190 TCCxGGG A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 60 0 0 17.008531 0.857143 0.02 -0.068762 1 6 29 154 60 60 0 0 AA 14.136672 47 0 1302 0 KEEP - Lrrc15 NO UVC_1 chr16 32256844 32256844 G A exonic Wdr53 synonymous SNV NM_001185162:c.G780A:p.G260G exonic Wdr53 synonymous SNV uc007yym.2:c.G780A:p.G260G exonic ENSMUSG00000022787 synonymous SNV ENSMUST00000023474:c.G780A:p.G260G 16qB2 "Score=0.951569;Name=No.62250,chr18:84881948" NA chr16 32256844 AGGxAAT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 48 0 0 8.552588 0.75 0.02 -0.035073 1 3 29 81 60 60 0 0 GG 11.4238 38 0 1065 0 KEEP + Wdr53 YES UVC_1 chr16 3949442 3949442 T G exonic Nlrc3 nonsynonymous SNV NM_001081280:c.A2894C:p.N965T exonic Nlrc3 nonsynonymous SNV uc007xzd.1:c.A779C:p.N260T exonic ENSMUSG00000049871 nonsynonymous SNV ENSMUST00000163478:c.A779C:p.N260T 16qA1 NA NA chr16 3949442 GCAxTCT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 119 0 1 6.901448 0.25 0.02 -0.105229 9 3 251 84 60 60 0 0 TT 26.44809 88 0 2376 0 KEEP - Nlrc3 NO UVC_1 chr16 4039811 4039811 G A splicing Dnase1(NM_010061:exon9:c.802-1G>A) NA NA splicing "Dnase1(uc007xzh.1:exon10:c.802-1G>A,uc007xzi.1:exon9:c.679-1G>A,uc007xzj.2:exon9:c.802-1G>A)" NA NA splicing "ENSMUSG00000005980(ENSMUST00000006136:exon9:c.802-1G>A,ENSMUST00000120009:exon10:c.802-1G>A)" NA NA 16qA1 NA NA chr16 4039811 GTAxGCT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 47 0 0 22.328366 0.875 0.02 -0.070161 1 7 29 203 60 60 0 0 GG 9.626195 32 0 910 0 KEEP + Dnase1 YES UVC_1 chr16 4687319 4687319 G A exonic Dnaja3 synonymous SNV NM_001135112:c.G294A:p.L98L exonic Dnaja3 synonymous SNV uc007yab.2:c.G294A:p.L98L exonic ENSMUSG00000004069 synonymous SNV ENSMUST00000060067:c.G294A:p.L98L 16qA1 NA NA chr16 4687319 CCTxGGA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 54 2 0 8.024377 0.5 0.02 -0.052617 3 3 86 84 60 60 0 0 GG 12.934669 43 0 1219 0 KEEP + Dnaja3 YES UVC_1 chr16 65547134 65547134 G A exonic Chmp2b nonsynonymous SNV NM_026879:c.C281T:p.S94F exonic Chmp2b nonsynonymous SNV uc007zqj.1:c.C281T:p.S94F exonic ENSMUSG00000004843 nonsynonymous SNV ENSMUST00000004965:c.C281T:p.S94F 16qC1.3 NA NA chr16 65547134 TGGxAAT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 62 0 0 9.929439 1 0.02 -0.026309 0 3 0 85 0 60 0 0 GG 13.536639 45 0 1278 0 KEEP - Chmp2b YES UVC_1 chr16 90964597 90964597 T A exonic Synj1 nonsynonymous SNV NM_001045515:c.A2006T:p.K669M exonic Synj1 nonsynonymous SNV uc007zwx.2:c.A1991T:p.K664M exonic ENSMUSG00000022973 nonsynonymous SNV ENSMUST00000130813:c.A1991T:p.K664M 16qC3.3 NA NA chr16 90964597 CCCxTGT T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 70 2 0 10.799303 0.5 0.02 -0.070157 4 4 114 113 60 60 0 0 TT 15.63948 52 0 1436 0 KEEP - Synj1 NO UVC_1 chr16 90964638 90964638 A T exonic Synj1 synonymous SNV NM_001045515:c.T1965A:p.V655V exonic Synj1 synonymous SNV uc007zwx.2:c.T1950A:p.V650V exonic ENSMUSG00000022973 synonymous SNV ENSMUST00000130813:c.T1950A:p.V650V 16qC3.3 NA NA chr16 90964638 ATCxACT A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 58 0 0 14.686127 0.625 0.02 -0.070159 3 5 84 146 60 60 0 0 AA 13.199203 44 0 1188 0 KEEP - Synj1 NO UVC_1 chr17 13720500 13720500 C A ncRNA_exonic Smok4a NA NA ncRNA_exonic Smok(Tcr) NA NA UTR3 ENSMUSG00000079711 NA NA 17qA1 "Score=0.969176;Name=No.65332,chr17:13708775" NA chr17 13720500 TCCxCAA C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 66 2 11 13.383675 0.625 0.02 -0.070138 3 5 84 133 60 60 0 0 CC 15.040069 50 0 1403 0 KEEP - Smok4a NO UVC_1 chr17 23447492 23447492 G A exonic Vmn2r114 nonsynonymous SNV NM_001102584:c.C602T:p.S201F exonic Vmn2r114 nonsynonymous SNV uc009vbr.1:c.C602T:p.S201F exonic ENSMUSG00000091945 nonsynonymous SNV ENSMUST00000168033:c.C602T:p.S201F 17qA3.3 "Score=0.947527;Name=No.65593,chr17:23611762" NA chr17 23447492 AAGxATA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 150 3 6 6.882162 0.230769 0.02 -0.122785 10 3 296 85 60 60 0 0 GG 37.587005 125 0 3522 0 KEEP - Vmn2r114 YES UVC_1 chr17 24641574 24641574 G A exonic Caskin1 nonsynonymous SNV NM_027937:c.G2390A:p.G797E exonic Caskin1 nonsynonymous SNV uc008awo.1:c.G2177A:p.G726E exonic ENSMUSG00000033597 nonsynonymous SNV ENSMUST00000115347:c.G2177A:p.G726E 17qA3.3 NA NA chr17 24641574 GGGxACC G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999997 47 0 0 13.24602 0.714286 0.02 -0.061239 2 5 61 127 60 60 0 0 GG 9.623665 32 0 880 0 KEEP + Caskin1 YES UVC_1 chr17 24728363 24728363 T G exonic Pkd1 synonymous SNV NM_013630:c.T10923G:p.G3641G exonic Pkd1 synonymous SNV uc008awv.1:c.T10923G:p.G3641G exonic ENSMUSG00000032855 synonymous SNV ENSMUST00000035565:c.T10923G:p.G3641G 17qA3.3 NA NA chr17 24728363 TGGxTTT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 44 0 0 7.344202 0.333333 0.02 -0.07889 6 3 160 84 60 60 0 0 TT 9.624182 32 0 875 0 KEEP + Pkd1 NO UVC_1 chr17 26097452 26097452 G C exonic Capn15 nonsynonymous SNV NM_015830:c.C2594G:p.A865G exonic Solh nonsynonymous SNV uc008bcz.1:c.C2594G:p.A865G exonic ENSMUSG00000037326 nonsynonymous SNV ENSMUST00000041641:c.C2594G:p.A865G 17qA3.3 NA NA chr17 26097452 GTGxCCC G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 85 0 0 7.44416 0.333333 0.02 -0.078897 6 3 166 85 60 60 0 0 GG 19.243102 64 0 1726 0 KEEP - Capn15 NO UVC_1 chr17 28304065 28304065 C T exonic Scube3 synonymous SNV NM_001004366:c.C2334T:p.F778F exonic Scube3 synonymous SNV uc008bqf.1:c.C1536T:p.F512F exonic ENSMUSG00000038677 synonymous SNV ENSMUST00000074355:c.C2172T:p.F724F 17qA3.3 NA NA chr17 28304065 CTTxTGC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 67 0 0 7.278777 0.3 0.02 -0.087688 7 3 195 85 60 60 0 0 CC 15.340925 51 0 1457 0 KEEP + Scube3 YES UVC_1 chr17 31123461 31123461 G T exonic Umodl1 nonsynonymous SNV NM_177465:c.G2084T:p.S695I exonic Umodl1 nonsynonymous SNV uc008buf.1:c.G2084T:p.S695I exonic ENSMUSG00000054134 nonsynonymous SNV ENSMUST00000066554:c.G2084T:p.S695I 17qA3.3 NA NA chr17 31123461 CCAxTCC G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 67 0 0 19.405307 0.636364 0.02 -0.09646 4 7 116 192 60 60 0 0 GG 12.934364 43 0 1214 0 KEEP + Umodl1 NO UVC_1 chr17 34070477 34070477 C T intronic Rgl2 NA NA intronic Rgl2 NA NA intronic ENSMUSG00000041354 NA NA 17qB1 NA NA chr17 34070477 CTTxCTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 48 0 0 17.305362 0.75 0.02 -0.070148 2 6 58 164 60 60 0 0 CC 11.12995 37 0 1047 0 KEEP + Rgl2 YES UVC_1 chr17 34076695 34076695 C T exonic H2-Ke2 nonsynonymous SNV NM_010385:c.G133A:p.E45K exonic H2-Ke2 nonsynonymous SNV uc008cah.1:c.G133A:p.E45K exonic ENSMUSG00000024309 nonsynonymous SNV ENSMUST00000025163:c.G133A:p.E45K 17qB1 NA NA chr17 34076695 CCTxCTT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 164 2 0 41.695265 0.571429 0.02 -0.254051 12 16 355 424 60 60 0 0 CC 32.126057 107 0 2969 0 KEEP - H2-Ke2 YES UVC_1 chr17 34182694 34182694 C T intronic Col11a2 NA NA intronic Col11a2 NA NA intronic ENSMUSG00000024330 NA NA 17qB1 NA NA chr17 34182694 TGTxTGT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 120 2 0 13.999118 0.555556 0.02 -0.078931 4 5 118 143 60 60 0 0 CC 27.357336 91 0 2556 0 KEEP + Col11a2 YES UVC_1 chr17 34250691 34250691 C T exonic Brd2 synonymous SNV NM_001204973:c.G1659A:p.K553K exonic Brd2 synonymous SNV uc008cbi.1:c.G1659A:p.K553K exonic ENSMUSG00000024335 synonymous SNV ENSMUST00000095347:c.G1521A:p.K507K 17qB1 NA NA chr17 34250691 CTTxTTT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 93 0 0 19.140904 0.538462 0.02 -0.11401 6 7 179 197 60 60 0 0 CC 19.252988 64 0 1833 0 KEEP - Brd2 YES UVC_1 chr17 3427232 3427232 C T exonic Tiam2 nonsynonymous SNV NM_001122998:c.C1729T:p.P577S exonic Tiam2 nonsynonymous SNV uc008aeo.1:c.C1729T:p.P577S exonic ENSMUSG00000023800 nonsynonymous SNV ENSMUST00000072156:c.C1729T:p.P577S 17qA1 NA NA chr17 3427232 GTCxCAG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 99 0 0 10.885532 0.4 0.02 -0.087701 6 4 171 119 60 60 0 0 CC 22.850685 76 0 2106 0 KEEP + Tiam2 YES UVC_1 chr17 35211195 35211195 T A exonic Ly6g6d nonsynonymous SNV NM_033478:c.A118T:p.I40F exonic Ly6g6d nonsynonymous SNV uc008cfn.1:c.A118T:p.I40F exonic ENSMUSG00000073413 nonsynonymous SNV ENSMUST00000007259:c.A118T:p.I40F 17qB1 NA NA chr17 35211195 TGAxCAC T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 317 6 0 7.497863 0.133333 0.02 -0.26306 26 4 724 107 60 60 0 0 TT 71.563574 238 0 6434 0 KEEP - Ly6g6d NO UVC_1 chr17 35576701 35576701 C T intronic "H2-Q7,H2-Q9" NA NA intronic "H2-Q6,H2-Q7,H2-Q9" NA NA intronic ENSMUSG00000060550 NA NA 17qB1 "Score=0.969905;Name=No.65659,chr17:35499753" NA chr17 35576701 CTCxACG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 535 7 17 9.495736 0.151515 0.02 -0.289341 28 5 795 132 60 40 0 0 CC 128.738313 431 1 12191 7 KEEP + H2-Q7 YES UVC_1 chr17 36193279 36193279 C T exonic Gm11127 nonsynonymous SNV NM_001199967:c.G995A:p.R332K exonic Gm11127 nonsynonymous SNV uc008cjz.2:c.G995A:p.R332K exonic ENSMUSG00000079492 nonsynonymous SNV ENSMUST00000113742:c.G995A:p.R332K 17qB1 "Score=0.951462;Name=No.65666,chr17:36245854" NA chr17 36193279 TTTxTCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 179 1 12 21.398157 0.5 0.02 -0.140317 8 8 235 224 60 60 0 0 CC 40.897019 136 0 3875 0 KEEP - Gm11127 YES UVC_1 chr17 46962765 46962765 G A exonic Gltscr1l nonsynonymous SNV NM_001100452:c.C467T:p.S156F exonic BC032203 nonsynonymous SNV uc012aur.1:c.C467T:p.S156F exonic ENSMUSG00000036568 nonsynonymous SNV ENSMUST00000040624:c.C467T:p.S156F 17qC NA NA chr17 46962765 TTAxAAA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 57 0 0 16.63943 0.6 0.02 -0.08767 4 6 109 167 60 60 0 0 GG 12.620096 42 0 1181 0 KEEP - Gltscr1l YES UVC_1 chr17 47928478 47928478 C T exonic Tfeb synonymous SNV NM_011549:c.C1320T:p.P440P exonic Tcfeb synonymous SNV uc008cwf.1:c.C1320T:p.P440P exonic ENSMUSG00000023990 synonymous SNV ENSMUST00000146782:c.C720T:p.P240P 17qC NA NA chr17 47928478 GCCxTCG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 112 0 0 37.621596 0.56 0.02 -0.21917 11 14 314 384 60 60 0 0 CC 23.069731 77 0 2090 0 KEEP + Tfeb YES UVC_1 chr17 49210043 49210043 T G exonic Lrfn2 nonsynonymous SNV NM_027452:c.T826G:p.F276V exonic Lrfn2 nonsynonymous SNV uc008cyd.2:c.T826G:p.F276V exonic ENSMUSG00000040490 nonsynonymous SNV ENSMUST00000046254:c.T826G:p.F276V 17qC NA NA chr17 49210043 TACxTTT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999997 47 0 0 9.591081 0.333333 0.02 -0.105231 8 4 227 110 60 60 0 0 TT 9.323355 31 0 851 0 KEEP + Lrfn2 NO UVC_1 chr17 53552893 53552893 C A exonic Efhb nonsynonymous SNV NM_172497:c.G1888T:p.D630Y exonic Efhb nonsynonymous SNV uc008czm.1:c.G637T:p.D213Y exonic ENSMUSG00000023931 nonsynonymous SNV ENSMUST00000024725:c.G1888T:p.D630Y 17qC NA NA chr17 53552893 CGTxACA C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 50 0 0 10.830798 0.571429 0.02 -0.061385 3 4 87 110 60 60 0 0 CC 11.43169 38 0 1092 0 KEEP - Efhb NO UVC_1 chr17 8454649 8454649 A G intergenic "Ccr6(dist=4655),Mpc1(dist=22029)" NA NA intergenic "Ccr6(dist=4655),Brp44l(dist=22029)" NA NA intergenic "ENSMUSG00000040899(dist=4657),ENSMUSG00000023861(dist=21120)" NA NA 17qA1 "Score=0.96713;Name=No.66946,chr4:119091134" NA chr17 8454649 ACAxAAA A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019833 0.019982 0.99257 12 0 0 9.153718 0.75 0.02 -0.03508 1 3 28 87 60 60 0 0 AA 2.406223 8 0 221 0 KEEP NA Ccr6 NO UVC_1 chr18 22667650 22667650 T G exonic Asxl3 nonsynonymous SNV NM_001167777:c.T730G:p.L244V exonic Asxl3 nonsynonymous SNV uc008efm.2:c.T730G:p.L244V exonic ENSMUSG00000045215 nonsynonymous SNV ENSMUST00000097655:c.T763G:p.L255V 18qA2 NA NA chr18 22667650 ATTxTAC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 127 1 0 6.982351 0.230769 0.02 -0.114002 10 3 280 86 60 60 0 0 TT 25.265125 84 0 2320 0 KEEP + Asxl3 NO UVC_1 chr18 24175843 24175843 A T exonic Zfp191 nonsynonymous SNV NM_021559:c.T510A:p.D170E exonic Zfp191 nonsynonymous SNV uc008egm.1:c.T510A:p.D170E exonic ENSMUSG00000051469 nonsynonymous SNV ENSMUST00000066497:c.T510A:p.D170E 18qA2 "Score=0.963031;Name=No.72256,chrX_random:268453" NA chr18 24175843 AGCxTCC A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999997 34 0 0 6.853261 1 0.02 -0.017541 0 2 0 59 0 60 0 0 AA 8.41962 28 0 756 0 KEEP - Zfp191 NO UVC_1 chr18 24175845 24175845 C T exonic Zfp191 nonsynonymous SNV NM_021559:c.G508A:p.D170N exonic Zfp191 nonsynonymous SNV uc008egm.1:c.G508A:p.D170N exonic ENSMUSG00000051469 nonsynonymous SNV ENSMUST00000066497:c.G508A:p.D170N 18qA2 "Score=0.963031;Name=No.72256,chrX_random:268453" NA chr18 24175845 CATxCAG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999997 34 0 0 6.452686 1 0.02 -0.017537 0 2 0 55 0 60 0 0 CC 8.377254 28 0 776 0 KEEP - Zfp191 YES UVC_1 chr18 38122849 38122849 T C exonic Fchsd1 nonsynonymous SNV NM_175684:c.A1451G:p.E484G exonic Fchsd1 nonsynonymous SNV uc008ero.1:c.A1451G:p.E484G exonic ENSMUSG00000038524 nonsynonymous SNV ENSMUST00000043437:c.A1451G:p.E484G 18qB3 NA NA chr18 38122849 AGCxCAT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 350 3 0 19.891719 0.296296 0.02 -0.236795 19 8 552 232 60 60 0 0 TT 82.668695 275 0 7591 0 KEEP - Fchsd1 NO UVC_1 chr18 53884167 53884167 C T exonic Cep120 synonymous SNV NM_178686:c.G879A:p.K293K exonic Cep120 synonymous SNV uc008exy.1:c.G879A:p.K293K exonic ENSMUSG00000048799 synonymous SNV ENSMUST00000049811:c.G879A:p.K293K 18qD1 NA NA chr18 53884167 GCCxTTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 52 0 0 6.853209 1 0.02 -0.017541 0 2 0 59 0 60 0 0 CC 13.531053 45 0 1264 0 KEEP - Cep120 YES UVC_1 chr18 56686605 56686605 T A UTR3 Aldh7a1 NA NA UTR3 Aldh7a1 NA NA UTR3 ENSMUSG00000053644 NA NA 18qD3 NA NA chr18 56686605 CAGxATC T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 0.999997 45 0 0 13.105693 1 0.02 -0.035077 0 4 0 112 0 60 0 0 TT 8.717907 29 0 763 0 KEEP - Aldh7a1 NO UVC_1 chr19 10787156 10787156 C T exonic Vps37c nonsynonymous SNV NM_181403:c.C491T:p.P164L exonic Vps37c nonsynonymous SNV uc008gqr.1:c.C167T:p.P56L exonic ENSMUSG00000048832 nonsynonymous SNV ENSMUST00000087951:c.C491T:p.P164L 19qA NA NA chr19 10787156 TGCxGGA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043784 0.043787 0.999931 34 0 0 15.265778 0.714286 0.02 -0.061391 2 5 56 147 60 60 0 0 CC 7.212124 24 0 603 0 KEEP + Vps37c YES UVC_1 chr19 11023181 11023181 C T exonic Ccdc86 synonymous SNV NM_023731:c.G543A:p.L181L exonic Ccdc86 synonymous SNV uc008grj.2:c.G543A:p.L181L exonic ENSMUSG00000024732 synonymous SNV ENSMUST00000025639:c.G543A:p.L181L 19qA NA NA chr19 11023181 CTCxAGG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999366 24 0 0 6.953373 1 0.02 -0.017542 0 2 0 60 0 55 0 0 CC 5.113891 17 0 483 0 KEEP - Ccdc86 YES UVC_1 chr19 12993925 12993925 C T exonic Olfr1448 synonymous SNV NM_146701:c.G873A:p.R291R exonic Olfr1448 synonymous SNV uc008gux.1:c.G873A:p.R291R exonic ENSMUSG00000048456 synonymous SNV ENSMUST00000054737:c.G873A:p.R291R 19qA "Score=0.93125;Name=No.72624,chr19:12958160" NA chr19 12993925 GTTxCTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 57 0 0 16.469288 0.545455 0.02 -0.096469 5 6 147 169 60 60 0 0 CC 12.032328 40 0 1136 0 KEEP - Olfr1448 YES UVC_1 chr19 18897854 18897854 A T exonic Trpm6 nonsynonymous SNV NM_153417:c.A2441T:p.E814V exonic Trpm6 nonsynonymous SNV uc008gya.1:c.A2441T:p.E814V exonic ENSMUSG00000024727 nonsynonymous SNV ENSMUST00000040489:c.A2441T:p.E814V 19qB NA NA chr19 18897854 ATGxGAA A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 0.999997 38 0 0 13.406126 1 0.02 -0.03508 0 4 0 115 0 60 0 0 AA 8.396443 28 0 770 0 KEEP + Trpm6 NO UVC_1 chr19 27468770 27468770 T C exonic D19Bwg1357e nonsynonymous SNV NM_177474:c.A1772G:p.K591R exonic D19Bwg1357e nonsynonymous SNV uc008hby.1:c.A1772G:p.K591R exonic ENSMUSG00000041360 nonsynonymous SNV ENSMUST00000076219:c.A1772G:p.K591R 19qC1 NA NA chr19 27468770 GACxTGA T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 287 1 0 6.311463 0.166667 0.02 -0.157858 15 3 437 84 60 60 0 0 TT 58.328863 194 0 5429 0 KEEP - D19Bwg1357e NO UVC_1 chr19 29078283 29078283 C T intronic Cdc37l1 NA NA exonic Gm10136 nonsynonymous SNV uc012bkg.1:c.G50A:p.R17Q exonic ENSMUSG00000063754 nonsynonymous SNV ENSMUST00000075049:c.G50A:p.R17Q 19qC1 NA NA chr19 29078283 TGCxGTT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 81 0 13 11.851723 0.666667 0.02 -0.052591 2 4 44 116 15 29 0 0 CC 20.358318 68 0 1600 0 KEEP - Cdc37l1 YES UVC_1 chr19 41945602 41945602 C A intronic Rrp12 NA NA intronic Rrp12 NA NA intronic ENSMUSG00000035049 NA NA 19qC3 NA NA chr19 41945602 TTCxTAG C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 91 4 0 16.268996 0.545455 0.02 -0.096463 5 6 145 167 60 60 0 0 CC 18.950809 63 0 1787 0 KEEP - Rrp12 NO UVC_1 chr19 44038225 44038225 A C exonic Cpn1 synonymous SNV NM_030703:c.T1107G:p.T369T exonic Cpn1 synonymous SNV uc008hpb.1:c.T315G:p.T105T exonic ENSMUSG00000025196 synonymous SNV ENSMUST00000026210:c.T1107G:p.T369T 19qC3 NA NA chr19 44038225 TGAxGTG A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 104 2 0 6.931913 0.375 0.02 -0.070148 5 3 144 78 60 60 0 0 AA 22.258515 74 0 2065 0 KEEP - Cpn1 NO UVC_1 chr19 44142073 44142073 C T intronic Erlin1 NA NA intronic Erlin1 NA NA intronic ENSMUSG00000025198 NA NA 19qC3 NA NA chr19 44142073 AATxCCT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 103 0 0 13.47405 0.5 0.02 -0.087697 5 5 144 141 60 60 0 0 CC 22.255203 74 0 2098 0 KEEP - Erlin1 YES UVC_1 chr19 46080600 46080600 A C UTR3 Hps6 NA NA UTR3 Hps6 NA NA ncRNA_UTR3 ENSMUSG00000074811 NA NA 19qC3 NA NA chr19 46080600 GCAxTAC A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999997 41 2 0 8.324819 0.5 0.02 -0.052617 3 3 83 87 60 60 0 0 AA 9.623458 32 0 865 0 KEEP + Hps6 NO UVC_1 chr19 5466411 5466411 C T exonic Ctsw synonymous SNV NM_009985:c.G510A:p.Q170Q exonic Ctsw synonymous SNV uc008gdk.2:c.G510A:p.Q170Q exonic ENSMUSG00000024910 synonymous SNV ENSMUST00000025844:c.G510A:p.Q170Q 19qA NA NA chr19 5466411 AAAxTGC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 227 0 0 33.444355 0.666667 0.02 -0.15783 6 12 167 327 60 60 0 0 CC 51.119555 170 0 4748 0 KEEP - Ctsw YES UVC_1 chr19 55573767 55573767 C T exonic Vti1a nonsynonymous SNV NM_016862:c.C533T:p.S178F exonic Vti1a nonsynonymous SNV uc008hxx.1:c.C533T:p.S178F exonic ENSMUSG00000024983 nonsynonymous SNV ENSMUST00000095950:c.C533T:p.S178F 19qD2 NA NA chr19 55573767 GCTxTCG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 94 2 0 7.854711 0.428571 0.02 -0.061391 4 3 118 85 60 60 0 0 CC 18.62874 62 0 1730 0 KEEP + Vti1a YES UVC_1 chr19 56388534 56388534 A T exonic Habp2 nonsynonymous SNV NM_146101:c.A779T:p.K260M exonic Habp2 nonsynonymous SNV uc008hys.1:c.A779T:p.K260M exonic ENSMUSG00000025075 nonsynonymous SNV ENSMUST00000165522:c.A89T:p.K30M 19qD2 NA NA chr19 56388534 GGAxGAC A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 96 0 0 9.30175 0.25 0.02 -0.140318 12 4 348 113 60 60 0 0 AA 20.149746 67 0 1843 0 KEEP + Habp2 NO UVC_1 chr19 6252810 6252810 G T exonic Atg2a nonsynonymous SNV NM_194348:c.G3050T:p.G1017V exonic Atg2a nonsynonymous SNV uc008ghv.1:c.G2267T:p.G756V exonic ENSMUSG00000024773 nonsynonymous SNV ENSMUST00000045351:c.G3050T:p.G1017V 19qA NA NA chr19 6252810 TGGxCCG G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 82 0 0 7.243387 0.333333 0.02 -0.07892 6 3 169 83 60 60 0 0 GG 18.870465 63 0 1653 0 KEEP + Atg2a NO UVC_1 chr19 7000558 7000558 C T exonic Kcnk4 nonsynonymous SNV NM_008431:c.G1112A:p.R371Q exonic Kcnk4 nonsynonymous SNV uc008gjj.1:c.G1112A:p.R371Q exonic ENSMUSG00000024957 nonsynonymous SNV ENSMUST00000025908:c.G1112A:p.R371Q 19qA NA NA chr19 7000558 CCCxGAG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 96 0 0 35.280628 0.705882 0.02 -0.148798 5 12 113 340 60 60 0 0 CC 19.706508 66 0 1600 0 KEEP - Kcnk4 YES UVC_1 chr19 7568869 7568869 C T intronic Atl3 NA NA intronic Atl3 NA NA intronic ENSMUSG00000024759 NA NA 19qA NA NA chr19 7568869 ATCxCCG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 0.999999 58 0 0 11.28475 0.454545 0.02 -0.096371 6 5 173 122 60 60 0 0 CC 10.82268 36 0 988 0 KEEP + Atl3 YES UVC_1 chr19 8878218 8878218 C T exonic Zbtb3 nonsynonymous SNV NM_001098237:c.C704T:p.S235F exonic Zbtb3 nonsynonymous SNV uc008gnb.1:c.C704T:p.S235F exonic ENSMUSG00000071661 nonsynonymous SNV ENSMUST00000088094:c.C704T:p.S235F 19qA NA NA chr19 8878218 TCTxTTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 118 0 0 26.924897 0.818182 0.02 -0.096454 2 9 55 249 60 60 0 0 CC 27.074199 90 0 2582 0 KEEP + Zbtb3 YES UVC_1 chr1 135287345 135287345 T G exonic Sox13 nonsynonymous SNV NM_011439:c.A271C:p.S91R exonic Sox13 nonsynonymous SNV uc007cqk.1:c.A271C:p.S91R exonic ENSMUSG00000070643 nonsynonymous SNV ENSMUST00000094551:c.A271C:p.S91R 1qE4 NA NA chr1 135287345 GGCxTCC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 192 4 0 8.172074 0.15625 0.02 -0.280557 27 5 761 118 60 60 0 0 TT 36.369719 121 0 3318 0 KEEP - Sox13 NO UVC_1 chr1 137967551 137967551 C T exonic Cacna1s synonymous SNV NM_001081023:c.C606T:p.L202L exonic Cacna1s synonymous SNV uc007cuf.1:c.C606T:p.L202L exonic ENSMUSG00000026407 synonymous SNV ENSMUST00000057096:c.C606T:p.L202L 1qE4 NA NA chr1 137967551 GCTxGTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 80 1 0 13.276175 0.5 0.02 -0.087647 5 5 128 139 60 60 0 0 CC 18.922472 63 0 1523 0 KEEP + Cacna1s YES UVC_1 chr1 163031645 163031645 A G exonic Klhl20 nonsynonymous SNV NM_001039482:c.T1073C:p.L358P exonic Klhl20 nonsynonymous SNV uc007dff.1:c.T1073C:p.L358P exonic ENSMUSG00000026705 nonsynonymous SNV ENSMUST00000111611:c.T1073C:p.L358P 1qH2.1 NA NA chr1 163031645 TCAxGAA A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 66 0 0 10.298446 0.5 0.02 -0.070136 4 4 108 108 60 60 0 0 AA 16.230969 54 0 1502 0 KEEP - Klhl20 NO UVC_1 chr1 168876428 168876428 T C intergenic "Fmo9(dist=264452),Gm16701(dist=27726)" NA NA intergenic "Fmo9(dist=264452),BC056189(dist=27726)" NA NA ncRNA_exonic ENSMUSG00000086925 NA NA 1qH2.3 NA NA chr1 168876428 TTCxCGA T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 192 4 26 7.643463 0.333333 0.02 -0.078931 6 3 174 87 50 29 0 0 TT 45.954869 153 0 4212 0 KEEP NA Fmo9 NO UVC_1 chr1 173286846 173286846 G C exonic Pfdn2 nonsynonymous SNV NM_011070:c.G175C:p.D59H exonic Pfdn2 nonsynonymous SNV uc007doc.1:c.G175C:p.D59H exonic ENSMUSG00000006412 nonsynonymous SNV ENSMUST00000006579:c.G157C:p.D53H 1qH3 NA NA chr1 173286846 ATCxATA G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05413 0.054137 0.999863 28 2 0 7.633084 0.375 0.02 -0.070141 5 3 135 85 60 37 0 0 GG 6.012407 20 0 537 0 KEEP + Pfdn2 NO UVC_1 chr1 192882753 192882753 G A exonic Tatdn3 nonsynonymous SNV NM_001163421:c.C202T:p.P68S exonic Tatdn3 nonsynonymous SNV uc007eby.2:c.C202T:p.P68S exonic ENSMUSG00000026632 nonsynonymous SNV ENSMUST00000027945:c.C202T:p.P68S 1qH6 NA NA chr1 192882753 CTGxGTG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 0.999998 49 0 0 8.669257 0.6 0.02 -0.04385 2 3 57 87 60 60 0 0 GG 9.926461 33 0 927 0 KEEP - Tatdn3 YES UVC_1 chr1 195000474 195000474 G T UTR5 A130010J15Rik NA NA UTR5 A130010J15Rik NA NA UTR5 ENSMUSG00000079144 NA NA 1qH6 NA NA chr1 195000474 TGTxGCC G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999892 33 0 0 6.653007 1 0.02 -0.017539 0 2 0 57 0 60 0 0 GG 6.919342 23 0 664 0 KEEP + A130010J15Rik NO UVC_1 chr1 20514304 20514304 T G exonic Pkhd1 nonsynonymous SNV NM_153179:c.A3665C:p.D1222A exonic Pkhd1 nonsynonymous SNV uc007akv.1:c.A3665C:p.D1222A exonic ENSMUSG00000043760 nonsynonymous SNV ENSMUST00000060305:c.A3665C:p.D1222A 1qA4 NA NA chr1 20514304 GGGxCTC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043541 0.043787 0.994391 22 0 0 7.954982 0.428571 0.02 -0.061387 4 3 113 86 60 60 0 0 TT 3.909559 13 0 353 0 KEEP - Pkhd1 NO UVC_1 chr1 36592549 36592549 T G exonic Ankrd23 nonsynonymous SNV NM_153502:c.A5C:p.D2A exonic Ankrd23 nonsynonymous SNV uc007aql.1:c.A5C:p.D2A exonic ENSMUSG00000067653 nonsynonymous SNV ENSMUST00000054665:c.A5C:p.D2A 1qB NA NA chr1 36592549 AAGxCCA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 245 0 0 9.16976 0.190476 0.02 -0.184139 17 4 472 117 60 60 0 0 TT 52.260276 174 0 4709 0 KEEP - Ankrd23 NO UVC_1 chr1 59902494 59902494 A G exonic Bmpr2 nonsynonymous SNV NM_007561:c.A794G:p.E265G exonic Bmpr2 nonsynonymous SNV uc007bdz.1:c.A794G:p.E265G exonic ENSMUSG00000067336 nonsynonymous SNV ENSMUST00000087435:c.A794G:p.E265G 1qC1.3 NA NA chr1 59902494 ACGxGAG A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 57 0 0 8.569019 0.6 0.02 -0.043851 2 3 59 86 60 60 0 0 AA 11.118559 37 0 1013 0 KEEP + Bmpr2 NO UVC_1 chr1 74847446 74847446 A T exonic Wnt10a nonsynonymous SNV NM_009518:c.A716T:p.H239L exonic Wnt10a nonsynonymous SNV uc007bnf.2:c.A716T:p.H239L exonic ENSMUSG00000026167 nonsynonymous SNV ENSMUST00000006718:c.A716T:p.H239L 1qC3 NA NA chr1 74847446 TCCxTGC A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 103 0 0 19.241812 0.538462 0.02 -0.113997 6 7 164 198 60 60 0 0 AA 24.35424 81 0 2142 0 KEEP + Wnt10a NO UVC_1 chr1 87577682 87577682 C T exonic Sp100 nonsynonymous SNV NM_013673:c.C956T:p.S319F exonic Sp100 nonsynonymous SNV uc007bud.1:c.C956T:p.S319F exonic ENSMUSG00000026222 nonsynonymous SNV ENSMUST00000054279:c.C956T:p.S319F 1qC5 NA NA chr1 87577682 GCTxTAT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 57 0 0 13.005551 1 0.02 -0.035076 0 4 0 111 0 60 0 0 CC 13.537368 45 0 1291 0 KEEP + Sp100 YES UVC_1 chr1 89105704 89105704 A G exonic Chrng nonsynonymous SNV NM_009604:c.A719G:p.K240R exonic Chrng nonsynonymous SNV uc007bwh.1:c.A719G:p.K240R exonic ENSMUSG00000026253 nonsynonymous SNV ENSMUST00000113243:c.A563G:p.K188R 1qD NA NA chr1 89105704 GCAxGCC A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 143 2 0 13.023696 0.384615 0.02 -0.114003 8 5 224 144 60 60 0 0 AA 28.868701 96 0 2624 0 KEEP + Chrng NO UVC_1 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 215 0 0 10.587859 0.121951 0.02 -0.377067 36 5 996 148 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO UVC_1 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 218 0 0 10.765709 0.15625 0.02 -0.280643 27 5 783 144 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 YES UVC_1 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 106 0 0 13.964997 0.375 0.02 -0.140229 10 6 258 157 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 NO UVC_1 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 104 0 0 6.373315 0.214286 0.02 -0.122782 11 3 327 81 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO UVC_1 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 215 1 0 9.56583 0.131579 0.02 -0.341984 33 5 920 136 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a YES UVC_1 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999998 51 0 0 7.131979 0.375 0.02 -0.078922 5 3 147 80 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a YES UVC_1 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 91 0 0 9.181564 0.235294 0.02 -0.149073 13 4 361 113 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO UVC_1 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 242 1 0 13.781623 0.24 0.02 -0.227964 19 6 507 169 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP - A730008H23Rik NO UVC_1 chr1 95217297 95217297 C T intronic Pask NA NA intronic Pask NA NA intronic ENSMUSG00000026274 NA NA 1qD NA NA chr1 95217297 CTCxAAA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 DBSNP COVERED 0.490544 0.490544 1 281 0 0 33.208202 0.521739 0.02 -0.20171 11 12 321 344 60 60 0 0 CC 60.757443 202 0 5689 0 KEEP - Pask YES UVC_1 chr1 95217599 95217599 T G exonic Pask synonymous SNV NM_080850:c.A2655C:p.R885R exonic Pask synonymous SNV uc007cdt.2:c.A2655C:p.R885R exonic ENSMUSG00000026274 synonymous SNV ENSMUST00000027493:c.A2655C:p.R885R 1qD NA NA chr1 95217599 TGCxCGA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 88 0 0 7.232467 0.272727 0.02 -0.096472 8 3 233 86 60 60 0 0 TT 18.949352 63 0 1757 0 KEEP - Pask NO UVC_1 chr2 104966611 104966611 C T ncRNA_exonic AI314831 NA NA ncRNA_exonic AI314831 NA NA ncRNA_exonic ENSMUSG00000074987 NA NA 2qE3 NA NA chr2 104966611 TCCxTCG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 85 0 0 13.899022 0.555556 0.02 -0.078926 4 5 115 142 60 60 0 0 CC 18.640284 62 0 1686 0 KEEP - AI314831 YES UVC_1 chr2 112595273 112595273 G T exonic Ryr3 synonymous SNV NM_177652:c.C8298A:p.A2766A exonic Ryr3 synonymous SNV uc008lpg.1:c.C8298A:p.A2766A exonic ENSMUSG00000057378 synonymous SNV ENSMUST00000080673:c.C8238A:p.A2746A 2qE3 NA NA chr2 112595273 CTTxGCC G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 223 0 0 12.320442 0.8 0.02 -0.096463 1 4 29 115 60 60 0 0 GG 53.52022 178 0 5010 0 KEEP - Ryr3 NO UVC_1 chr2 145338546 145338546 C T exonic Slc24a3 synonymous SNV NM_053195:c.C252T:p.S84S exonic Slc24a3 synonymous SNV uc008mrq.1:c.C252T:p.S84S exonic ENSMUSG00000063873 synonymous SNV ENSMUST00000081121:c.C252T:p.S84S 2qG1 NA NA chr2 145338546 ATCxTTG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 78 0 0 8.468875 0.6 0.02 -0.043851 2 3 60 85 60 60 0 0 CC 17.44739 58 0 1652 0 KEEP + Slc24a3 YES UVC_1 chr2 164715160 164715160 T G exonic Pcif1 nonsynonymous SNV NM_146129:c.T1532G:p.F511C exonic Pcif1 nonsynonymous SNV uc008nwp.1:c.T1532G:p.F511C exonic ENSMUSG00000039849 nonsynonymous SNV ENSMUST00000041643:c.T1532G:p.F511C 2qH3 NA NA chr2 164715160 GCTxCGC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 174 0 0 8.680623 0.181818 0.02 -0.192923 18 4 504 113 60 60 0 0 TT 38.464711 128 0 3468 0 KEEP + Pcif1 NO UVC_1 chr2 164838401 164838401 T C exonic Ncoa5 synonymous SNV NM_144892:c.A300G:p.R100R exonic Ncoa5 synonymous SNV uc008nwv.1:c.A300G:p.R100R exonic ENSMUSG00000039804 synonymous SNV ENSMUST00000040381:c.A300G:p.R100R 2qH3 NA NA chr2 164838401 ATCxCGA T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 72 2 0 10.22225 0.444444 0.02 -0.078926 5 4 146 110 60 60 0 0 TT 16.543768 55 0 1540 0 KEEP - Ncoa5 NO UVC_1 chr2 164996332 164996332 T C exonic Cdh22 nonsynonymous SNV NM_174988:c.A332G:p.E111G exonic Cdh22 nonsynonymous SNV uc008nxc.2:c.A332G:p.E111G exonic ENSMUSG00000053166 nonsynonymous SNV ENSMUST00000138643:c.A332G:p.E111G 2qH3 NA NA chr2 164996332 AACxCGT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 116 0 0 12.167542 0.277778 0.02 -0.157851 13 5 369 144 60 60 0 0 TT 25.867021 86 0 2387 0 KEEP - Cdh22 NO UVC_1 chr2 167309920 167309920 G C exonic Spata2 nonsynonymous SNV NM_170756:c.C478G:p.L160V exonic Spata2 nonsynonymous SNV uc008nzs.1:c.C478G:p.L160V exonic ENSMUSG00000047030 nonsynonymous SNV ENSMUST00000057627:c.C478G:p.L160V 2qH3 NA NA chr2 167309920 AGAxCTC G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 DBSNP UNCOVERED 0.099721 0.099721 1 88 0 0 16.938731 0.6 0.02 -0.087685 4 6 109 170 60 60 0 0 GG 19.550915 65 0 1807 0 KEEP - Spata2 NO UVC_1 chr2 181228977 181228977 A G exonic Abhd16b synonymous SNV NM_183181:c.A966G:p.Q322Q exonic Abhd16b synonymous SNV uc008omj.2:c.A966G:p.Q322Q exonic ENSMUSG00000055882 synonymous SNV ENSMUST00000069649:c.A966G:p.Q322Q 2qH4 NA NA chr2 181228977 ACAxGAT A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 127 1 0 9.501784 0.25 0.02 -0.140318 12 4 344 115 60 60 0 0 AA 27.926885 93 0 2561 0 KEEP + Abhd16b NO UVC_1 chr2 25421341 25421341 G A exonic Mamdc4 nonsynonymous SNV NM_001081199:c.C2483T:p.S828F exonic Mamdc4 nonsynonymous SNV uc008iso.1:c.C2483T:p.S828F exonic ENSMUSG00000026941 nonsynonymous SNV ENSMUST00000114221:c.C2234T:p.S745F 2qA3 NA NA chr2 25421341 TCAxAGT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 64 0 0 7.532488 0.375 0.02 -0.070159 5 3 146 84 60 60 0 0 GG 14.739794 49 0 1399 0 KEEP - Mamdc4 YES UVC_1 chr2 25464270 25464270 C T exonic 4921530D09Rik synonymous SNV NM_029859:c.G1530A:p.S510S exonic 4921530D09Rik synonymous SNV uc012bsc.1:c.G1530A:p.S510S exonic ENSMUSG00000026940 synonymous SNV ENSMUST00000028309:c.G1530A:p.S510S 2qA3 NA NA chr2 25464270 CCGxGAA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 131 0 0 12.724776 0.384615 0.02 -0.11396 8 5 208 141 60 60 0 0 CC 29.438702 98 0 2456 0 KEEP - 4921530D09Rik YES UVC_1 chr2 25748696 25748696 C T exonic Kcnt1 synonymous SNV NM_001145403:c.C690T:p.N230N exonic Kcnt1 synonymous SNV uc008itq.1:c.C288T:p.N96N exonic ENSMUSG00000058740 synonymous SNV ENSMUST00000038506:c.C708T:p.N236N 2qA3 NA NA chr2 25748696 CAAxCAG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 79 0 0 11.031216 0.571429 0.02 -0.061384 3 4 84 112 60 60 0 0 CC 18.042438 60 0 1644 0 KEEP + Kcnt1 YES UVC_1 chr2 26212446 26212446 C T intronic Card9 NA NA intronic Card9 NA NA ncRNA_intronic ENSMUSG00000086779 NA NA 2qA3 NA NA chr2 26212446 CTCxTCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 117 1 0 12.223283 0.384615 0.02 -0.113974 8 5 220 136 60 60 0 0 CC 27.372269 91 0 2566 0 KEEP - Card9 YES UVC_1 chr2 26286803 26286803 C G intronic Sec16a NA NA intronic Sec16a NA NA intronic ENSMUSG00000026924 NA NA 2qA3 NA NA chr2 26286803 CTCxCCG C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024071 0.024074 0.999892 29 0 0 8.268542 0.6 0.02 -0.043845 2 3 58 83 60 60 0 0 CC 6.918737 23 0 651 0 KEEP - Sec16a NO UVC_1 chr2 26837161 26837161 A G intronic Adamts13 NA NA intronic Adamts13 NA NA intronic ENSMUSG00000014852 NA NA 2qA3 NA NA chr2 26837161 TTGxGCT A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043785 0.043787 0.999957 38 0 0 11.43154 0.571429 0.02 -0.06139 3 4 86 116 60 60 0 0 AA 7.820491 26 0 725 0 KEEP + Adamts13 NO UVC_1 chr2 26837162 26837162 G C intronic Adamts13 NA NA intronic Adamts13 NA NA intronic ENSMUSG00000014852 NA NA 2qA3 NA NA chr2 26837162 TGAxCTC G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043785 0.043787 0.999957 38 0 0 11.331245 0.571429 0.02 -0.061393 3 4 90 115 60 60 0 0 GG 7.821317 26 0 741 0 KEEP + Adamts13 NO UVC_1 chr2 27863327 27863327 C T exonic Col5a1 synonymous SNV NM_015734:c.C3426T:p.L1142L exonic Col5a1 synonymous SNV uc008ixt.2:c.C3426T:p.L1142L exonic ENSMUSG00000026837 synonymous SNV ENSMUST00000028280:c.C3426T:p.L1142L 2qA3 NA NA chr2 27863327 GCTxCCT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 71 0 0 26.859461 0.75 0.02 -0.105239 3 9 91 255 60 60 0 0 CC 14.739632 49 0 1386 0 KEEP + Col5a1 YES UVC_1 chr2 28690662 28690662 G A exonic Gtf3c4 nonsynonymous SNV NM_172977:c.C577T:p.L193F exonic Gtf3c4 nonsynonymous SNV uc008ize.2:c.C577T:p.L193F exonic ENSMUSG00000035666 nonsynonymous SNV ENSMUST00000037117:c.C577T:p.L193F 2qA3 NA NA chr2 28690662 TGAxGTT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 72 0 0 15.90961 0.428571 0.02 -0.122781 8 6 233 172 60 60 0 0 GG 15.031464 50 0 1405 0 KEEP - Gtf3c4 YES UVC_1 chr2 31261914 31261914 C T intergenic "Ncs1(dist=110923),Ass1(dist=63876)" NA NA intergenic "Ncs1(dist=110923),Hmcn2(dist=31668)" NA NA exonic ENSMUSG00000055632 synonymous SNV ENSMUST00000113532:c.C8007T:p.I2669I 2qB NA NA chr2 31261914 CATxTCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 0.999997 36 0 0 8.853198 0.75 0.02 -0.035078 1 3 29 84 60 60 0 0 CC 7.308039 27 1 768 7 KEEP NA Ncs1 YES UVC_1 chr2 32529136 32529136 C T exonic Eng nonsynonymous SNV NM_001146348:c.C1013T:p.A338V exonic Eng nonsynonymous SNV uc008jgk.2:c.C1016T:p.A339V exonic ENSMUSG00000026814 nonsynonymous SNV ENSMUST00000009705:c.C1016T:p.A339V 2qB NA NA chr2 32529136 CTGxACC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999997 44 0 0 7.132352 0.375 0.02 -0.070146 5 3 139 80 60 60 0 0 CC 9.292176 31 0 828 0 KEEP + Eng YES UVC_1 chr2 73452821 73452821 A C exonic Chn1 nonsynonymous SNV NM_001166604:c.T557G:p.I186S exonic Chn1 nonsynonymous SNV uc009vcb.2:c.T359G:p.I120S exonic ENSMUSG00000056486 nonsynonymous SNV ENSMUST00000070579:c.T359G:p.I120S 2qC3 NA NA chr2 73452821 ATAxTTT A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 77 0 0 14.074882 0.5 0.02 -0.087692 5 5 136 147 60 60 0 0 AA 15.938756 53 0 1430 0 KEEP - Chn1 NO UVC_1 chr2 76589142 76589142 G A exonic Ttn synonymous SNV NM_028004:c.C44482T:p.L14828L exonic Ttn synonymous SNV uc008kfo.1:c.C44482T:p.L14828L exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000011934:c.C44482T:p.L14828L 2qC3 NA NA chr2 76589142 TTAxAGG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 85 1 0 9.984658 0.4 0.02 -0.087699 6 4 179 110 60 60 0 0 GG 20.446748 68 0 1937 0 KEEP - Ttn YES UVC_1 chr2 76592281 76592281 T G exonic Ttn nonsynonymous SNV NM_028004:c.A41558C:p.K13853T exonic Ttn nonsynonymous SNV uc008kfo.1:c.A41558C:p.K13853T exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.A41558C:p.K13853T 2qC3 NA NA chr2 76592281 GCCxTGA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 58 0 0 12.700536 0.833333 0.02 -0.05255 1 5 28 115 60 60 0 0 TT 12.63235 42 0 1162 0 KEEP - Ttn NO UVC_1 chr2 76635745 76635745 A G exonic Ttn nonsynonymous SNV NM_028004:c.T19036C:p.C6346R exonic Ttn nonsynonymous SNV uc008kfo.1:c.T19036C:p.C6346R exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.T19036C:p.C6346R 2qC3 NA NA chr2 76635745 TGCxGTC A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 84 2 0 7.832676 0.375 0.02 -0.070162 5 3 145 87 60 60 0 0 AA 20.145716 67 0 1854 0 KEEP - Ttn NO UVC_1 chr2 76752550 76752550 T G intronic Ttn NA NA intronic Ttn NA NA exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000099980:c.A16211C:p.Y5404S 2qC3 NA NA chr2 76752550 GCGxATC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 50 0 0 8.66944 0.6 0.02 -0.043848 2 3 55 87 60 60 0 0 TT 11.427748 38 0 1022 0 KEEP - Ttn NO UVC_1 chr3 104587627 104587627 C T exonic Ppm1j synonymous SNV NM_027982:c.C1006T:p.L336L exonic Ppm1j synonymous SNV uc008quk.1:c.C1006T:p.L336L exonic ENSMUSG00000002228 synonymous SNV ENSMUST00000002298:c.C1006T:p.L336L 3qF2.2 NA NA chr3 104587627 GAAxTAG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 51 0 0 7.554695 0.428571 0.02 -0.06138 4 3 111 82 60 60 0 0 CC 12.322877 41 0 1132 0 KEEP + Ppm1j YES UVC_1 chr3 107953162 107953162 T C exonic Gpr61 nonsynonymous SNV NM_175470:c.A1100G:p.E367G exonic Gpr61 nonsynonymous SNV uc008qye.1:c.A1100G:p.E367G exonic ENSMUSG00000046793 nonsynonymous SNV ENSMUST00000062028:c.A1100G:p.E367G 3qF2.3 NA NA chr3 107953162 AGCxCCT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 66 0 0 19.698408 0.583333 0.02 -0.105233 5 7 140 199 60 60 0 0 TT 13.806987 46 0 1242 0 KEEP - Gpr61 NO UVC_1 chr3 137884748 137884748 C T exonic Adh7 synonymous SNV NM_009626:c.C90T:p.A30A exonic Adh7 synonymous SNV uc008rnd.2:c.C90T:p.A30A exonic ENSMUSG00000055301 synonymous SNV ENSMUST00000090171:c.C90T:p.A30A 3qG3 NA NA chr3 137884748 GGCxCCA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.997832 23 0 0 6.753119 1 0.02 -0.01754 0 2 0 58 0 60 0 0 CC 4.812859 16 0 450 0 KEEP + Adh7 YES UVC_1 chr3 137884749 137884749 C T exonic Adh7 nonsynonymous SNV NM_009626:c.C91T:p.P31S exonic Adh7 nonsynonymous SNV uc008rnd.2:c.C91T:p.P31S exonic ENSMUSG00000055301 nonsynonymous SNV ENSMUST00000090171:c.C91T:p.P31S 3qG3 NA NA chr3 137884749 GCCxCAC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.997832 23 0 0 6.753148 1 0.02 -0.01754 0 2 0 58 0 60 0 0 CC 4.812912 16 0 451 0 KEEP + Adh7 YES UVC_1 chr3 151155284 151155284 T G exonic Eltd1 synonymous SNV NM_133222:c.T216G:p.A72A exonic Eltd1 synonymous SNV uc008rsj.2:c.T216G:p.A72A exonic ENSMUSG00000039167 synonymous SNV ENSMUST00000046977:c.T216G:p.A72A 3qH3 NA NA chr3 151155284 TGCxGTG T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 170 1 9 33.552408 0.764706 0.02 -0.148955 4 13 116 314 60 60 0 0 TT 40.005994 133 0 3724 0 KEEP + Eltd1 NO UVC_1 chr3 30535204 30535204 T G exonic Lrrc34 nonsynonymous SNV NM_027941:c.A470C:p.N157T exonic Lrrc34 nonsynonymous SNV uc008ovb.1:c.A470C:p.N157T exonic ENSMUSG00000027702 nonsynonymous SNV ENSMUST00000029252:c.A470C:p.N157T 3qA3 NA NA chr3 30535204 GAGxTCA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 92 2 0 7.854865 0.428571 0.02 -0.061385 4 3 112 85 60 60 0 0 TT 21.049039 70 0 1891 0 KEEP - Lrrc34 NO UVC_1 chr3 36537402 36537402 A C exonic Trpc3 nonsynonymous SNV NM_019510:c.T2362G:p.F788V exonic "Trpc3,trp3" nonsynonymous SNV uc008ozu.1:c.T436G:p.F146V exonic ENSMUSG00000027716 nonsynonymous SNV ENSMUST00000029271:c.T2362G:p.F788V 3qB NA NA chr3 36537402 AAAxGTT A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 113 0 0 11.798586 0.375 0.02 -0.138941 10 6 288 136 60 60 0 0 AA 23.461079 78 0 2179 0 KEEP - Trpc3 NO UVC_1 chr3 51494372 51494372 G C exonic Maml3 nonsynonymous SNV NM_001004176:c.C2812G:p.P938A exonic Maml3 nonsynonymous SNV uc008pee.2:c.C874G:p.P292A exonic ENSMUSG00000061143 nonsynonymous SNV ENSMUST00000082294:c.C1447G:p.P483A 3qC NA NA chr3 51494372 TAGxCAA G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 74 0 0 16.749399 0.5 0.02 -0.10524 6 6 172 175 60 60 0 0 GG 16.213957 54 0 1453 0 KEEP - Maml3 NO UVC_1 chr3 64456056 64456056 G T ncRNA_exonic Vmn2r-ps11 NA NA exonic Vmn2r-ps11 nonsynonymous SNV uc008pkg.2:c.C872A:p.A291E ncRNA_exonic ENSMUSG00000074581 NA NA 3qE1 "Score=0.981182;Name=No.81601,chr3:64267157" NA chr3 64456056 ATTxCAA G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 218 2 0 14.030803 0.26087 0.02 -0.201686 17 6 483 169 60 60 0 0 GG 52.324229 174 0 4925 0 KEEP - Vmn2r-ps11 NO UVC_1 chr3 79413751 79413751 T G exonic Etfdh nonsynonymous SNV NM_025794:c.A1252C:p.T418P exonic Etfdh nonsynonymous SNV uc008pnq.2:c.A1252C:p.T418P exonic ENSMUSG00000027809 nonsynonymous SNV ENSMUST00000029386:c.A1252C:p.T418P 3qE3 NA NA chr3 79413751 TAGxTAG T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 DBSNP COVERED 0.322807 0.322807 1 102 0 0 24.573876 0.5 0.02 -0.157848 9 9 251 257 60 60 0 0 TT 21.622707 72 0 1927 0 KEEP - Etfdh NO UVC_1 chr3 88306647 88306647 C G intronic Lmna NA NA intronic Lmna NA NA intronic ENSMUSG00000028063 NA NA 3qF1 NA NA chr3 88306647 GTGxCGG C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 60 0 0 15.609637 0.833333 0.02 -0.052619 1 5 29 144 60 60 0 0 CC 13.788795 46 0 1237 0 KEEP - Lmna NO UVC_1 chr3 92232408 92232408 T A intergenic "Sprr2j-ps(dist=9090),Sprr2k(dist=4096)" NA NA intergenic "Sprr2j-ps(dist=9090),Sprr2k(dist=4096)" NA NA exonic ENSMUSG00000042165 nonsynonymous SNV ENSMUST00000047300:c.A617T:p.N206I 3qF1 NA NA chr3 92232408 GCAxTGG T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999863 25 0 1 6.35232 1 0.02 -0.017535 0 2 0 54 0 60 0 0 TT 6.014867 20 0 545 0 KEEP NA Sprr2j-ps NO UVC_1 chr3 94239985 94239985 C G exonic Oaz3 unknown UNKNOWN exonic Oaz3 nonsynonymous SNV uc008qgh.2:c.G227C:p.C76S exonic ENSMUSG00000028141 nonsynonymous SNV ENSMUST00000029787:c.G230C:p.C77S 3qF2.1 NA NA chr3 94239985 AGGxAGG C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 95 0 0 13.222716 0.357143 0.02 -0.122788 9 5 265 148 60 60 0 0 CC 21.35695 71 0 2017 0 KEEP - Oaz3 NO UVC_1 chr3 94682595 94682595 T G exonic Pogz synonymous SNV NM_001165948:c.T2544G:p.A848A exonic Pogz synonymous SNV uc008qhc.2:c.T2571G:p.A857A exonic ENSMUSG00000038902 synonymous SNV ENSMUST00000107269:c.T2286G:p.A762A 3qF2.1 NA NA chr3 94682595 GGCxTCT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 64 0 0 7.454535 0.428571 0.02 -0.061381 4 3 112 81 60 60 0 0 TT 15.93692 53 0 1466 0 KEEP + Pogz NO UVC_1 chr3 9699531 9699531 C T exonic Pag1 synonymous SNV NM_053182:c.G561A:p.K187K exonic Pag1 synonymous SNV uc008opc.2:c.G363A:p.K121K exonic ENSMUSG00000027508 synonymous SNV ENSMUST00000108384:c.G561A:p.K187K 3qA1 NA NA chr3 9699531 CTCxTTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999999 48 0 0 10.485154 0.4 0.02 -0.087702 6 4 176 115 60 60 0 0 CC 10.528194 35 0 987 0 KEEP - Pag1 YES UVC_1 chr3 99981893 99981893 T G exonic Gdap2 nonsynonymous SNV NM_010269:c.T444G:p.C148W exonic Gdap2 nonsynonymous SNV uc008qqq.1:c.T444G:p.C148W exonic ENSMUSG00000027865 nonsynonymous SNV ENSMUST00000029459:c.T444G:p.C148W 3qF2.2 NA NA chr3 99981893 CTGxTAC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 67 0 0 11.53181 0.571429 0.02 -0.061387 3 4 83 117 60 60 0 0 TT 14.436747 48 0 1319 0 KEEP + Gdap2 NO UVC_1 chr4 106074617 106074617 T A intronic Usp24 NA NA intronic Usp24 NA NA intronic ENSMUSG00000028514 NA NA 4qC7 NA NA chr4 106074617 CTCxTCA T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 98 0 0 11.819355 0.8 0.02 -0.043842 1 4 29 110 60 60 0 0 TT 23.162193 77 0 2170 0 KEEP + Usp24 NO UVC_1 chr4 115192334 115192334 A C exonic Cyp4a10 nonsynonymous SNV NM_010011:c.A289C:p.T97P exonic "Cyp4a10,Cyp4a31" nonsynonymous SNV uc008uew.2:c.A289C:p.T97P exonic ENSMUSG00000066072 nonsynonymous SNV ENSMUST00000058785:c.A289C:p.T97P 4qD1 "Score=0.926879;Name=No.86353,chr4:115226056" NA chr4 115192334 TTAxCTG A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 118 4 0 12.570123 0.5 0.02 -0.087652 5 5 141 132 60 60 0 0 AA 26.166105 87 0 2381 0 KEEP + Cyp4a10 NO UVC_1 chr4 116940779 116940779 G A exonic Tmem53 synonymous SNV NM_026837:c.G462A:p.L154L exonic Tmem53 synonymous SNV uc008uil.1:c.G249A:p.L83L exonic ENSMUSG00000048772 synonymous SNV ENSMUST00000062824:c.G462A:p.L154L 4qD1 NA NA chr4 116940779 CCTxAGG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 125 0 0 9.071089 0.285714 0.02 -0.122774 10 4 291 108 60 60 0 0 GG 30.068977 100 0 2831 0 KEEP + Tmem53 YES UVC_1 chr4 116940781 116940781 G A exonic Tmem53 nonsynonymous SNV NM_026837:c.G464A:p.R155K exonic Tmem53 nonsynonymous SNV uc008uil.1:c.G251A:p.R84K exonic ENSMUSG00000048772 nonsynonymous SNV ENSMUST00000062824:c.G464A:p.R155K 4qD1 NA NA chr4 116940781 TGAxGGC G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 126 0 0 9.471306 0.285714 0.02 -0.122774 10 4 285 112 60 60 0 0 GG 30.078063 100 0 2814 0 KEEP + Tmem53 YES UVC_1 chr4 118407791 118407791 C A exonic Olfr1339 nonsynonymous SNV NM_146852:c.C656A:p.A219D exonic Olfr1339 nonsynonymous SNV uc008ukt.1:c.C656A:p.A219D exonic ENSMUSG00000070820 nonsynonymous SNV ENSMUST00000094832:c.C656A:p.A219D 4qD2.1 NA NA chr4 118407791 TGGxCTC C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 247 0 0 6.49311 0.142857 0.02 -0.184174 18 3 522 88 60 60 0 0 CC 55.257879 184 0 5014 0 KEEP + Olfr1339 NO UVC_1 chr4 119298854 119298854 C T intronic Foxj3 NA NA intronic Foxj3 NA NA intronic ENSMUSG00000032998 NA NA 4qD2.1 NA NA chr4 119298854 CTTxCTG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 227 0 0 22.696344 0.666667 0.02 -0.105232 4 8 116 222 60 60 0 0 CC 50.521432 168 0 4732 0 KEEP + Foxj3 YES UVC_1 chr4 129286357 129286357 T C exonic Dcdc2b nonsynonymous SNV NM_001195730:c.A815G:p.E272G exonic Dcdc2b nonsynonymous SNV uc012dlr.1:c.A815G:p.E272G exonic ENSMUSG00000078552 nonsynonymous SNV ENSMUST00000106037:c.A896G:p.E299G 4qD2.2 NA NA chr4 129286357 TTCxCAT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 141 0 0 7.94354 0.333333 0.02 -0.078935 6 3 176 90 60 60 0 0 TT 31.282524 104 0 2926 0 KEEP - Dcdc2b NO UVC_1 chr4 129695876 129695876 T C intronic Bai2 NA NA intronic Bai2 NA NA intronic ENSMUSG00000028782 NA NA 4qD2.2 NA NA chr4 129695876 GGCxTAC T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 DBSNP COVERED 0.353947 0.353947 1 266 1 0 8.265674 0.210526 0.02 -0.166554 15 4 436 106 60 60 0 0 TT 60.706957 202 0 5583 0 KEEP + Bai2 NO UVC_1 chr4 139211316 139211316 T G exonic Tas1r2 nonsynonymous SNV NM_031873:c.T349G:p.F117V exonic Tas1r2 nonsynonymous SNV uc008vmr.1:c.T349G:p.F117V exonic ENSMUSG00000028738 nonsynonymous SNV ENSMUST00000030510:c.T349G:p.F117V 4qD3 NA NA chr4 139211316 TACxTCC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 84 0 0 26.673079 0.9 0.02 -0.087662 1 9 30 238 60 60 0 0 TT 18.348054 61 0 1700 0 KEEP + Tas1r2 NO UVC_1 chr4 151357722 151357722 C T intronic Thap3 NA NA intronic Thap3 NA NA intronic ENSMUSG00000039759 NA NA 4qE2 NA NA chr4 151357722 GACxACC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 DBSNP UNCOVERED 0.120436 0.120436 1 106 0 0 24.516945 0.727273 0.02 -0.096464 3 8 80 235 60 60 0 0 CC 23.158126 77 0 2138 0 KEEP - Thap3 YES UVC_1 chr4 153376683 153376683 G A exonic Cep104 synonymous SNV NM_177673:c.G2553A:p.E851E exonic BC046331 synonymous SNV uc008wax.1:c.G2553A:p.E851E exonic ENSMUSG00000039523 synonymous SNV ENSMUST00000047497:c.G2553A:p.E851E 4qE2 NA NA chr4 153376683 TGAxAAC G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 56 0 0 16.482304 1 0.02 -0.043847 0 5 0 141 0 60 0 0 GG 12.033517 40 0 1156 0 KEEP + Cep104 YES UVC_1 chr4 155261041 155261041 A C exonic Cpsf3l nonsynonymous SNV NM_028020:c.A902C:p.E301A exonic Cpsf3l nonsynonymous SNV uc008wfh.1:c.A902C:p.E301A exonic ENSMUSG00000029034 nonsynonymous SNV ENSMUST00000030901:c.A902C:p.E301A 4qE2 NA NA chr4 155261041 TTGxGTT A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 100 4 0 7.02225 0.5 0.02 -0.052598 3 3 88 74 60 60 0 0 AA 25.565911 85 0 2367 0 KEEP + Cpsf3l NO UVC_1 chr4 155588495 155588495 C T intergenic "AW011738(dist=8358),2310042D19Rik(dist=1541)" NA NA intergenic "AK044300(dist=4802),2310042D19Rik(dist=1541)" NA NA intergenic "ENSMUSG00000078349(dist=9235),ENSMUSG00000078486(dist=1541)" NA NA 4qE2 NA NA chr4 155588495 CTTxTGG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077329 0.077336 0.999909 35 0 0 13.598602 0.555556 0.02 -0.078928 4 5 119 139 60 60 0 0 CC 7.217733 24 0 672 0 KEEP NA AW011738 YES UVC_1 chr4 34757255 34757255 A G exonic Zfp292 nonsynonymous SNV NM_013889:c.T3052C:p.F1018L exonic Zfp292 nonsynonymous SNV uc008sgn.2:c.T3052C:p.F1018L exonic ENSMUSG00000039967 nonsynonymous SNV ENSMUST00000047950:c.T3052C:p.F1018L 4qA5 NA NA chr4 34757255 AAAxGGT A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 114 0 0 7.43253 0.272727 0.02 -0.096471 8 3 231 88 60 60 0 0 AA 24.962453 83 0 2302 0 KEEP - Zfp292 NO UVC_1 chr4 41710672 41710672 A C intronic Il11ra1 NA NA intronic Il11ra1 NA NA intronic ENSMUSG00000073889 NA NA 4qA5 "Score=0.985371;Name=No.85798,chr4:42632459" NA chr4 41710672 ATAxAAG A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 78 0 0 13.574119 0.5 0.02 -0.087696 5 5 143 142 60 55 0 0 AA 17.719649 59 0 1616 0 KEEP + Il11ra1 NO UVC_1 chr4 43833418 43833418 T C exonic Olfr156 nonsynonymous SNV NM_019474:c.A814G:p.K272E exonic Olfr156 nonsynonymous SNV uc008srb.2:c.A814G:p.K272E exonic ENSMUSG00000059448 nonsynonymous SNV ENSMUST00000079465:c.A814G:p.K272E 4qB1 NA NA chr4 43833418 GTTxGTC T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 139 3 1 6.501385 0.25 0.02 -0.105221 9 3 255 80 60 60 0 0 TT 32.181263 107 0 2934 0 KEEP - Olfr156 NO UVC_1 chr4 47053867 47053867 C T intronic Anks6 NA NA intronic Anks6 NA NA intronic ENSMUSG00000066191 NA NA 4qB1 NA NA chr4 47053867 CCCxGCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 67 0 0 13.706522 1 0.02 -0.035082 0 4 0 118 0 60 0 0 CC 14.427457 48 0 1239 0 KEEP - Anks6 YES UVC_1 chr4 55544543 55544543 C T exonic Klf4 nonsynonymous SNV NM_010637:c.G85A:p.G29R exonic Klf4 nonsynonymous SNV uc008sxk.2:c.G85A:p.G29R exonic ENSMUSG00000003032 nonsynonymous SNV ENSMUST00000129250:c.G58A:p.G20R 4qB3 NA NA chr4 55544543 TTCxCGC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 1 47 0 0 6.552828 1 0.02 -0.017538 0 2 0 56 0 60 0 0 CC 12.6056 42 0 1135 0 KEEP - Klf4 YES UVC_1 chr4 94574480 94574480 T G exonic Eqtn nonsynonymous SNV NM_027089:c.A674C:p.N225T exonic 4930579C15Rik nonsynonymous SNV uc008tsl.2:c.A674C:p.N225T exonic ENSMUSG00000028575 nonsynonymous SNV ENSMUST00000030309:c.A674C:p.N225T 4qC5 NA NA chr4 94574480 GGGxTGA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 68 0 0 7.032603 0.272727 0.02 -0.096459 8 3 223 84 60 60 0 0 TT 13.831846 46 0 1253 0 KEEP - Eqtn NO UVC_1 chr5 104479838 104479838 T A splicing Nudt9(NM_028794:exon2:c.347+2T>A) NA NA splicing Nudt9(uc008yka.1:exon2:c.347+2T>A) NA NA splicing "ENSMUSG00000029310(ENSMUST00000128511:exon3:c.197+2T>A,ENSMUST00000150226:exon2:c.197+2T>A,ENSMUST00000031250:exon2:c.347+2T>A,ENSMUST00000134313:exon2:c.197+2T>A,ENSMUST00000148261:exon2:c.197+2T>A)" NA NA 5qE5 NA NA chr5 104479838 AGGxGAG T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036742 0.036766 0.999366 23 0 0 7.924305 0.5 0.02 -0.052615 3 3 85 83 60 60 0 0 TT 5.094114 17 0 426 0 KEEP + Nudt9 NO UVC_1 chr5 104479839 104479839 G T intronic Nudt9 NA NA intronic Nudt9 NA NA intronic ENSMUSG00000029310 NA NA 5qE5 NA NA chr5 104479839 GGTxAGC G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043759 0.043787 0.999366 24 0 0 10.329742 0.571429 0.02 -0.061379 3 4 90 105 60 60 0 0 GG 5.113041 17 0 472 0 KEEP + Nudt9 NO UVC_1 chr5 105550014 105550014 A T exonic Gbp4 nonsynonymous SNV NM_001256005:c.T1291A:p.S431T exonic Gbp4 nonsynonymous SNV uc008ykx.1:c.T883A:p.S295T exonic ENSMUSG00000079363 nonsynonymous SNV ENSMUST00000100962:c.T1291A:p.S431T 5qE5 NA NA chr5 105550014 CAGxAAA A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 246 6 15 10.948497 0.206897 0.02 -0.25421 23 6 656 145 60 60 0 0 AA 55.929623 186 0 5156 0 KEEP - Gbp4 NO UVC_1 chr5 109602970 109602970 G A exonic Vmn2r13 synonymous SNV NM_001104624:c.C879T:p.I293I exonic Vmn2r13 synonymous SNV uc009vdk.1:c.C879T:p.I293I exonic ENSMUSG00000091635 synonymous SNV ENSMUST00000053253:c.C879T:p.I293I 5qF "Score=0.910389;Name=No.90948,chr5:109318569" NA chr5 109602970 TGTxATC G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 285 35 0 40.19611 0.555556 0.02 -0.236758 12 15 340 411 60 60 0 0 GG 64.678499 215 0 6167 0 KEEP - Vmn2r13 YES UVC_1 chr5 112855728 112855728 A T intronic Sez6l NA NA intronic Sez6l NA NA intronic ENSMUSG00000058153 NA NA 5qF NA NA chr5 112855728 ACAxGAT A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 62 0 0 7.178526 0.3 0.02 -0.087697 7 3 202 84 60 60 0 0 AA 11.12767 37 0 1026 0 KEEP - Sez6l NO UVC_1 chr5 123570449 123570449 G A intronic Rhof NA NA intronic Rhof NA NA ncRNA_intronic ENSMUSG00000066418 NA NA 5qF NA NA chr5 123570449 AGGxGAG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 58 0 0 8.124452 0.5 0.02 -0.052618 3 3 86 85 60 60 0 0 GG 14.720005 49 0 1332 0 KEEP - Rhof YES UVC_1 chr5 135860708 135860708 G A intronic Pom121 NA NA intronic Pom121 NA NA intronic ENSMUSG00000053293 NA NA 5qG2 NA NA chr5 135860708 GAAxGGA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999997 39 0 0 11.031016 0.571429 0.02 -0.061388 3 4 88 112 60 60 0 0 GG 8.423419 28 0 806 0 KEEP - Pom121 YES UVC_1 chr5 135860709 135860709 G A intronic Pom121 NA NA intronic Pom121 NA NA intronic ENSMUSG00000053293 NA NA 5qG2 NA NA chr5 135860709 AAGxGAC G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999997 39 0 0 11.031016 0.571429 0.02 -0.061388 3 4 88 112 60 60 0 0 GG 8.421978 28 0 781 0 KEEP - Pom121 YES UVC_1 chr5 137590002 137590002 G A exonic Trim56 nonsynonymous SNV NM_201373:c.C529T:p.L177F exonic Trim56 nonsynonymous SNV uc009abp.1:c.C529T:p.L177F exonic ENSMUSG00000043279 nonsynonymous SNV ENSMUST00000054384:c.C529T:p.L177F 5qG2 NA NA chr5 137590002 AGAxGGC G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 81 0 0 16.449056 0.5 0.02 -0.10524 6 6 175 172 60 60 0 0 GG 15.641492 52 0 1476 0 KEEP - Trim56 YES UVC_1 chr5 145920491 145920491 G T exonic Ptcd1 synonymous SNV NM_133735:c.C660A:p.P220P exonic Ptcd1 synonymous SNV uc009amh.2:c.C660A:p.P220P exonic ENSMUSG00000029624 synonymous SNV ENSMUST00000031628:c.C660A:p.P220P 5qG2 NA NA chr5 145920491 CCAxGGG G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 71 0 0 7.924365 0.5 0.02 -0.052614 3 3 84 83 60 60 0 0 GG 15.941732 53 0 1487 0 KEEP - Ptcd1 NO UVC_1 chr5 150005719 150005719 G A exonic Uspl1 nonsynonymous SNV NM_001013378:c.G535A:p.D179N exonic Uspl1 nonsynonymous SNV uc009apg.2:c.G493A:p.D165N exonic ENSMUSG00000041264 nonsynonymous SNV ENSMUST00000050472:c.G535A:p.D179N 5qG3 NA NA chr5 150005719 GCTxATG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 0.999998 48 0 0 16.336959 0.6 0.02 -0.087689 4 6 116 164 60 60 0 0 GG 9.92734 33 0 945 0 KEEP + Uspl1 YES UVC_1 chr5 24313512 24313512 T G intronic Rheb NA NA intronic Rheb NA NA intronic ENSMUSG00000028945 NA NA 5qA3 NA NA chr5 24313512 GCCxTCC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 129 0 0 17.135617 0.444444 0.02 -0.157744 10 8 290 187 60 60 0 0 TT 29.476768 98 0 2743 0 KEEP - Rheb NO UVC_1 chr5 30395008 30395008 G A exonic Tyms nonsynonymous SNV NM_021288:c.C434T:p.S145L exonic Tyms nonsynonymous SNV uc008wux.2:c.C434T:p.S145L exonic ENSMUSG00000025747 nonsynonymous SNV ENSMUST00000026846:c.C434T:p.S145L 5qB1 NA NA chr5 30395008 CCTxAAT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 131 0 0 7.032471 0.272727 0.02 -0.149084 8 3 231 84 60 60 0 0 GG 31.287195 104 0 2998 0 KEEP - Tyms YES UVC_1 chr5 31502652 31502652 G A exonic Zfp513 nonsynonymous SNV NM_001177901:c.C749T:p.P250L exonic Zfp513 nonsynonymous SNV uc008wxq.1:c.C251T:p.P84L exonic ENSMUSG00000043059 nonsynonymous SNV ENSMUST00000031562:c.C749T:p.P250L 5qB1 NA NA chr5 31502652 CTGxGAG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 116 5 0 16.309957 0.428571 0.02 -0.122784 8 6 232 176 60 60 0 0 GG 27.050951 90 0 2503 0 KEEP - Zfp513 YES UVC_1 chr5 31552778 31552778 T A intronic Nrbp1 NA NA intronic Nrbp1 NA NA intronic ENSMUSG00000029148 NA NA 5qB1 NA NA chr5 31552778 GGAxAGA T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 45 0 0 10.63551 0.444444 0.02 -0.078598 5 4 119 114 60 60 0 0 TT 8.693854 29 0 732 0 KEEP + Nrbp1 NO UVC_1 chr5 3627601 3627601 G A intronic Pex1 NA NA intronic Pex1 NA NA intronic ENSMUSG00000005907 NA NA 5qA1 NA NA chr5 3627601 GTTxGAA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 65 0 0 7.543436 0.333333 0.02 -0.078928 6 3 172 86 60 60 0 0 GG 14.110017 47 0 1296 0 KEEP + Pex1 YES UVC_1 chr5 36957347 36957347 G A exonic D5Ertd579e unknown UNKNOWN exonic D5Ertd579e synonymous SNV uc012dvj.1:c.C2217T:p.F739F exonic ENSMUSG00000029190 synonymous SNV ENSMUST00000132383:c.C1986T:p.F662F 5qB3 NA NA chr5 36957347 TTTxAAA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 90 0 0 17.536233 0.411765 0.02 -0.149078 10 7 288 192 60 60 0 0 GG 19.253336 64 0 1838 0 KEEP - D5Ertd579e YES UVC_1 chr5 42207695 42207695 T G exonic Bod1l nonsynonymous SNV NM_001081422:c.A7514C:p.K2505T exonic Bod1l nonsynonymous SNV uc008xhd.2:c.A5270C:p.K1757T exonic ENSMUSG00000061755 nonsynonymous SNV ENSMUST00000166922:c.A2804C:p.K935T 5qB3 NA NA chr5 42207695 CATxTGG T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 71 0 0 6.379873 0.1875 0.02 -0.140304 13 3 363 83 60 60 0 0 TT 13.508912 45 0 1228 0 KEEP - Bod1l NO UVC_1 chr5 48628574 48628574 A C exonic Slit2 nonsynonymous SNV NM_178804:c.A2032C:p.T678P exonic Slit2 nonsynonymous SNV uc008xjo.2:c.A2032C:p.T678P exonic ENSMUSG00000031558 nonsynonymous SNV ENSMUST00000033967:c.A2032C:p.T678P 5qB3 NA NA chr5 48628574 GTAxCAG A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 54 0 0 7.654712 0.428571 0.02 -0.061383 4 3 112 83 60 60 0 0 AA 12.631457 42 0 1143 0 KEEP + Slit2 NO UVC_1 chr5 64675338 64675338 G A intronic Tbc1d1 NA NA exonic Tbc1d1 synonymous SNV uc008xmm.1:c.G2025A:p.E675E exonic ENSMUSG00000029174 synonymous SNV ENSMUST00000147348:c.G2025A:p.E675E 5qC3.1 NA NA chr5 64675338 AGAxCAA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 129 0 0 21.198013 0.5 0.02 -0.140312 8 8 232 222 60 60 0 0 GG 26.532286 91 1 2536 7 KEEP + Tbc1d1 YES UVC_1 chr5 66194845 66194845 A T intronic N4bp2 NA NA intronic N4bp2 NA NA intronic ENSMUSG00000037795 NA NA 5qC3.1 NA NA chr5 66194845 AAAxAAC A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139831 0.139832 0.999997 44 0 0 7.572656 0.4 0.02 -0.104983 6 4 169 86 60 60 0 0 AA 8.417612 28 0 755 0 KEEP + N4bp2 NO UVC_1 chr5 73151539 73151539 A C intronic Tec NA NA intronic Tec NA NA intronic ENSMUSG00000029217 NA NA 5qC3.2 NA NA chr5 73151539 TCAxATA A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 57 0 0 6.978545 0.3 0.02 -0.087691 7 3 197 82 60 60 0 0 AA 13.535074 45 0 1247 0 KEEP - Tec NO UVC_1 chr5 92468350 92468350 T C exonic Cdkl2 nonsynonymous SNV NM_001276315:c.A82G:p.R28G exonic Cdkl2 nonsynonymous SNV uc008ycd.1:c.A82G:p.R28G exonic ENSMUSG00000029403 nonsynonymous SNV ENSMUST00000069937:c.A82G:p.R28G 5qE2 NA NA chr5 92468350 TTCxTCC T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 152 1 0 6.36196 0.15 0.02 -0.175395 17 3 485 86 60 60 0 0 TT 30.982189 103 0 2892 0 KEEP - Cdkl2 NO UVC_1 chr6 100182892 100182892 T A exonic Rybp nonsynonymous SNV NM_019743:c.A403T:p.T135S exonic Rybp nonsynonymous SNV uc009dbw.1:c.A403T:p.T135S exonic ENSMUSG00000072872 nonsynonymous SNV ENSMUST00000101118:c.A403T:p.T135S 6qD3 "Score=0.99493;Name=No.38626,chr13:66108826" NA chr6 100182892 TTGxTGT T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 456 2 0 8.514986 0.166667 0.02 -0.210455 20 4 554 113 60 60 0 0 TT 104.054699 346 0 9470 0 KEEP - Rybp NO UVC_1 chr6 115974931 115974931 C A exonic Tmcc1 synonymous SNV NM_177412:c.G1524T:p.L508L exonic Tmcc1 synonymous SNV uc009djo.2:c.G564T:p.L188L exonic ENSMUSG00000030126 synonymous SNV ENSMUST00000172510:c.G177T:p.L59L 6qE3 NA NA chr6 115974931 ATTxAGC C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 53 6 0 9.77656 0.363636 0.02 -0.105234 7 4 201 110 60 37 0 0 CC 11.726571 39 0 1104 0 KEEP - Tmcc1 NO UVC_1 chr6 121790095 121790095 T C exonic Mug1 nonsynonymous SNV NM_008645:c.T104C:p.V35A exonic Mug1 nonsynonymous SNV uc009dor.1:c.T104C:p.V35A exonic ENSMUSG00000059908 nonsynonymous SNV ENSMUST00000032228:c.T104C:p.V35A 6qF1 "Score=0.919883;Name=No.94032,chr6:122085334" NA chr6 121790095 TGGxCCC T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 122 0 0 13.292908 0.454545 0.02 -0.096454 6 5 166 142 60 60 0 0 TT 28.839646 96 0 2572 0 KEEP + Mug1 NO UVC_1 chr6 12274576 12274576 A C intronic Thsd7a NA NA intronic Thsd7a NA NA intronic ENSMUSG00000032625 NA NA 6qA1 NA NA chr6 12274576 GAAxCTG A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 139 3 0 10.957641 0.217391 0.02 -0.201682 18 5 500 138 60 60 0 0 AA 30.076587 100 0 2769 0 KEEP - Thsd7a NO UVC_1 chr6 124655570 124655570 T C exonic Emg1 synonymous SNV NM_013536:c.A375G:p.R125R exonic Emg1 synonymous SNV uc009drg.2:c.A375G:p.R125R exonic ENSMUSG00000004268 synonymous SNV ENSMUST00000004379:c.A375G:p.R125R 6qF2 NA NA chr6 124655570 AATxCGA T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 57 0 0 7.743615 0.333333 0.02 -0.078927 6 3 169 88 60 60 0 0 TT 11.730316 39 0 1081 0 KEEP - Emg1 NO UVC_1 chr6 125113383 125113383 T G exonic Gapdh nonsynonymous SNV NM_008084:c.A95C:p.N32T exonic Gapdh nonsynonymous SNV uc009dts.1:c.A95C:p.N32T exonic ENSMUSG00000057666 nonsynonymous SNV ENSMUST00000073605:c.A95C:p.N32T 6qF3 "Score=0.995708;Name=No.94506,chr7:59002088" NA chr6 125113383 TCGxTGA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 389 6 131 7.001409 0.25 0.02 -0.105232 9 3 253 85 60 29 0 0 TT 94.945341 316 0 8513 0 KEEP - Gapdh NO UVC_1 chr6 128316134 128316134 A C exonic Foxm1 nonsynonymous SNV NM_008021:c.A412C:p.T138P exonic Foxm1 nonsynonymous SNV uc009edl.1:c.A412C:p.T138P exonic ENSMUSG00000001517 nonsynonymous SNV ENSMUST00000112148:c.A412C:p.T138P 6qF3 NA NA chr6 128316134 GAGxCGT A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 1 74 0 0 8.814797 0.571429 0.02 -0.060021 3 4 80 91 60 60 0 0 AA 17.443629 58 0 1581 0 KEEP + Foxm1 NO UVC_1 chr6 132157592 132157592 A G exonic Prb1 synonymous SNV NM_198669:c.T1095C:p.P365P exonic Prb1 synonymous SNV uc009ejc.1:c.T1095C:p.P365P exonic ENSMUSG00000067543 synonymous SNV ENSMUST00000087853:c.T1095C:p.P365P 6qG1 "Score=0.940298;Name=No.94151,chr6:132309379" NA chr6 132157592 CTGxGGA A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 416 2 5 9.101896 0.25 0.02 -0.140304 12 4 341 111 60 60 0 0 AA 97.622127 334 1 9052 25 KEEP - Prb1 NO UVC_1 chr6 41080161 41080161 T C intergenic "2210010C04Rik(dist=94653),Try4(dist=172110)" NA NA exonic TCRB13-3-3 nonsynonymous SNV uc009boc.2:c.T16C:p.F6L exonic ENSMUSG00000076470 nonsynonymous SNV ENSMUST00000103271:c.T16C:p.F6L 6qB1 NA NA chr6 41080161 CTCxTCT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 107 1 0 13.774423 0.5 0.02 -0.087698 5 5 142 144 60 60 0 0 TT 24.662883 82 0 2279 0 KEEP + 2210010C04Rik NO UVC_1 chr6 41630642 41630642 T G exonic Trpv5 nonsynonymous SNV NM_001007572:c.A13C:p.T5P exonic Trpv5 nonsynonymous SNV uc009bqd.1:c.A13C:p.T5P exonic ENSMUSG00000036899 nonsynonymous SNV ENSMUST00000031901:c.A13C:p.T5P 6qB2.1 NA NA chr6 41630642 GAGxTTT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 86 0 0 9.884844 0.4 0.02 -0.087691 6 4 170 109 60 60 0 0 TT 18.912189 63 0 1706 0 KEEP - Trpv5 NO UVC_1 chr6 70613655 70613655 C T intergenic "Rprl1(dist=1336487),Rpia(dist=102059)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076599 nonsynonymous SNV ENSMUST00000103400:c.C125T:p.S42F 6qC1 "Score=0.949188;Name=No.93940,chr6:70458876" NA chr6 70613655 TATxCTG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 284 0 11 15.225605 0.166667 0.02 -0.368336 35 7 1007 201 60 60 0 0 CC 64.046459 213 0 5971 0 KEEP + Rprl1 YES UVC_1 chr6 83352650 83352650 G A intronic Tet3 NA NA intronic Tet3 NA NA intronic ENSMUSG00000034832 NA NA 6qC3 NA NA chr6 83352650 ACGxACA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 92 0 0 72.381578 1 0.02 -0.192924 0 22 0 619 0 60 0 0 GG 15.942907 53 0 1503 0 KEEP - Tet3 YES UVC_1 chr6 87629181 87629181 G A ncRNA_intronic 1810020O05Rik NA NA ncRNA_exonic AK042791 NA NA ncRNA_exonic ENSMUSG00000071332 NA NA 6qD1 NA NA chr6 87629181 CTGxAGT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 68 0 0 44.878056 0.933333 0.02 -0.131545 1 14 29 398 60 60 0 0 GG 12.324285 41 0 1151 0 KEEP + 1810020O05Rik YES UVC_1 chr6 91430705 91430705 C T exonic Tmem43 nonsynonymous SNV NM_028766:c.C574T:p.L192F exonic Tmem43 nonsynonymous SNV uc009cyc.1:c.C574T:p.L192F exonic ENSMUSG00000030095 nonsynonymous SNV ENSMUST00000032183:c.C574T:p.L192F 6qD1 NA NA chr6 91430705 TTTxTCT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 156 0 0 27.821957 0.407407 0.02 -0.236736 16 11 446 305 60 60 0 0 CC 32.15464 107 0 2984 0 KEEP + Tmem43 YES UVC_1 chr6 92748055 92748055 C T exonic Adamts9 nonsynonymous SNV NM_175314:c.G3227A:p.G1076D exonic Adamts9 nonsynonymous SNV uc009czc.2:c.G1361A:p.G454D exonic ENSMUSG00000030022 nonsynonymous SNV ENSMUST00000167391:c.G3227A:p.G1076D 6qD1 NA NA chr6 92748055 GCGxCTG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 106 0 0 8.224486 0.5 0.02 -0.052621 3 3 88 86 60 60 0 0 CC 26.160512 87 0 2391 0 KEEP - Adamts9 YES UVC_1 chr6 95076929 95076929 C T exonic Kbtbd8 nonsynonymous SNV NM_001102670:c.C1564T:p.L522F exonic Kbtbd8 nonsynonymous SNV uc009czx.2:c.C1564T:p.L522F exonic ENSMUSG00000030031 nonsynonymous SNV ENSMUST00000119582:c.C1564T:p.L522F 6qD2 NA NA chr6 95076929 GTTxTTT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054131 0.054137 0.999892 35 0 0 10.899177 0.5 0.02 -0.070163 4 4 120 114 60 60 0 0 CC 6.918041 23 0 651 0 KEEP + Kbtbd8 YES UVC_1 chr7 107065473 107065473 C T intronic Xrra1 NA NA intronic Xrra1 NA NA intronic ENSMUSG00000035211 NA NA 7qE2 NA NA chr7 107065473 CCTxTTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 116 2 0 7.332312 0.375 0.02 -0.070157 5 3 146 82 60 60 0 0 CC 25.869062 86 0 2445 0 KEEP + Xrra1 YES UVC_1 chr7 107584285 107584285 G A exonic C2cd3 unknown UNKNOWN exonic C2cd3 nonsynonymous SNV uc009imy.1:c.G3184A:p.G1062R exonic ENSMUSG00000047248 nonsynonymous SNV ENSMUST00000119647:c.G3184A:p.G1062R 7qE3 NA NA chr7 107584285 TTTxGAA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 80 0 0 16.837899 0.6 0.02 -0.087694 4 6 114 169 60 60 0 0 GG 16.846982 56 0 1618 0 KEEP + C2cd3 YES UVC_1 chr7 109862489 109862489 A G exonic Olfr33 nonsynonymous SNV NM_147073:c.T437C:p.V146A exonic Olfr33 nonsynonymous SNV uc009isj.1:c.T437C:p.V146A exonic ENSMUSG00000066273 nonsynonymous SNV ENSMUST00000084817:c.T437C:p.V146A 7qE3 NA NA chr7 109862489 ATGxCAT A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 153 0 0 6.772866 0.2 0.02 -0.131537 12 3 335 86 60 60 0 0 AA 33.361827 111 0 3024 0 KEEP - Olfr33 NO UVC_1 chr7 111297530 111297530 T G exonic Ubqlnl nonsynonymous SNV NM_198624:c.A1273C:p.I425L exonic Ubqlnl nonsynonymous SNV uc009ivl.1:c.A1273C:p.I425L exonic ENSMUSG00000051437 nonsynonymous SNV ENSMUST00000059121:c.A1273C:p.I425L 7qE3 NA NA chr7 111297530 GGAxCAT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 55 0 0 13.774779 0.5 0.02 -0.087691 5 5 137 144 60 60 0 0 TT 12.919831 43 0 1148 0 KEEP - Ubqlnl NO UVC_1 chr7 116024946 116024946 A G exonic Olfr518 nonsynonymous SNV NM_146306:c.T173C:p.L58P exonic Olfr518 nonsynonymous SNV uc009jcz.1:c.T173C:p.L58P exonic ENSMUSG00000046431 nonsynonymous SNV ENSMUST00000059617:c.T173C:p.L58P 7qE3 NA NA chr7 116024946 ATCxGGG A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 224 4 0 18.203356 0.470588 0.02 -0.14901 9 8 262 195 60 60 0 0 AA 49.873571 170 1 4665 11 KEEP - Olfr518 NO UVC_1 chr7 12738493 12738493 A T exonic Vmn1r78 nonsynonymous SNV NM_134208:c.A681T:p.K227N exonic Vmn1r78 nonsynonymous SNV uc009fdu.1:c.A681T:p.K227N exonic ENSMUSG00000061602 nonsynonymous SNV ENSMUST00000078039:c.A681T:p.K227N 7qA1 NA NA chr7 12738493 AAAxGTC A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 53 0 0 7.832669 0.375 0.02 -0.070161 5 3 145 87 60 60 0 0 AA 11.430738 38 0 1073 0 KEEP + Vmn1r78 NO UVC_1 chr7 133815528 133815528 T C intronic Ccdc101 NA NA intronic Ccdc101 NA NA intronic ENSMUSG00000030714 NA NA 7qF3 NA NA chr7 133815528 CACxGTT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 183 2 0 8.301673 0.25 0.02 -0.140301 12 4 351 103 60 60 0 0 TT 39.398023 131 0 3624 0 KEEP + Ccdc101 NO UVC_1 chr7 136742648 136742648 G A exonic Wdr11 nonsynonymous SNV NM_172255:c.G308A:p.G103E exonic Wdr11 nonsynonymous SNV uc009jzm.2:c.G308A:p.G103E exonic ENSMUSG00000042055 nonsynonymous SNV ENSMUST00000084519:c.G308A:p.G103E 7qF3 NA NA chr7 136742648 CCGxAGT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 108 0 0 10.799195 0.5 0.02 -0.070159 4 4 117 113 60 60 0 0 GG 25.267986 84 0 2387 0 KEEP + Wdr11 YES UVC_1 chr7 138711769 138711769 G A exonic Bub3 synonymous SNV NM_009774:c.G648A:p.K216K exonic Bub3 synonymous SNV uc009kbq.1:c.G648A:p.K216K exonic ENSMUSG00000066979 synonymous SNV ENSMUST00000084502:c.G648A:p.K216K 7qF3 "Score=0.932374;Name=No.68052,chr17:72606081" NA chr7 138711769 GAAxAAG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 68 0 0 7.823916 0.5 0.02 -0.052616 3 3 89 82 60 60 0 0 GG 16.846621 56 0 1609 0 KEEP + Bub3 YES UVC_1 chr7 147824400 147824400 T C exonic Olfr61 nonsynonymous SNV NM_146964:c.T799C:p.Y267H exonic Olfr61 nonsynonymous SNV uc009khx.1:c.T799C:p.Y267H exonic ENSMUSG00000066124 nonsynonymous SNV ENSMUST00000084456:c.T799C:p.Y267H 7qF5 NA NA chr7 147824400 AGCxACA T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 318 2 0 22.393942 0.310345 0.02 -0.254316 20 9 566 259 60 60 0 0 TT 76.391063 254 0 6957 0 KEEP + Olfr61 NO UVC_1 chr7 15249790 15249790 T G exonic Gm4745 nonsynonymous SNV NM_001038676:c.T279G:p.N93K exonic Gm4745 nonsynonymous SNV uc009fge.1:c.T279G:p.N93K exonic ENSMUSG00000055942 nonsynonymous SNV ENSMUST00000069740:c.T279G:p.N93K 7qA1 "Score=0.931896;Name=No.98278,chr7:16342271" NA chr7 15249790 AAAxTTT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 99 0 0 7.332727 0.272727 0.02 -0.096459 8 3 220 87 60 60 0 0 TT 24.057013 80 0 2149 0 KEEP + Gm4745 NO UVC_1 chr7 16678186 16678186 A T splicing Zfp541(NM_001099277:exon13:c.3512-2A>T) NA NA splicing "Zfp541(uc009fgv.1:exon13:c.3512-2A>T,uc012fab.1:exon11:c.3329-2A>T)" NA NA splicing "ENSMUSG00000078796(ENSMUST00000163604:exon11:c.3329-2A>T,ENSMUST00000108509:exon13:c.3512-2A>T)" NA NA 7qA2 NA NA chr7 16678186 GGCxGGT A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 129 0 0 15.909628 0.428571 0.02 -0.122782 8 6 234 172 60 60 0 0 AA 29.156721 97 0 2641 0 KEEP + Zfp541 NO UVC_1 chr7 19979313 19979313 T A intronic Ercc2 NA NA intronic Ercc2 NA NA intronic ENSMUSG00000030400 NA NA 7qA3 NA NA chr7 19979313 GACxTCC T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 89 0 0 9.491225 0.333333 0.02 -0.105217 8 4 219 109 60 60 0 0 TT 20.445794 68 0 1847 0 KEEP + Ercc2 NO UVC_1 chr7 25697830 25697830 C A intronic Arhgef1 NA NA intronic Arhgef1 NA NA intronic ENSMUSG00000040940 NA NA 7qA3 NA NA chr7 25697830 GGGxACT C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 62 0 0 9.791085 0.333333 0.02 -0.105238 8 4 232 112 60 60 0 0 CC 13.535128 45 0 1275 0 KEEP + Arhgef1 NO UVC_1 chr7 28042428 28042428 G C exonic Adck4 nonsynonymous SNV NM_133770:c.G1486C:p.A496P exonic Adck4 nonsynonymous SNV uc009fvp.1:c.G514C:p.A172P exonic ENSMUSG00000003762 nonsynonymous SNV ENSMUST00000108378:c.G1486C:p.A496P 7qA3 NA NA chr7 28042428 GGGxCTT G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 207 2 0 19.043816 0.375 0.02 -0.209446 15 9 411 217 60 60 0 0 GG 45.334129 151 0 4091 0 KEEP + Adck4 NO UVC_1 chr7 30114000 30114000 C T intronic Sipa1l3 NA NA exonic Sipa1l3 nonsynonymous SNV uc009gbt.1:c.G776A:p.G259E intronic ENSMUSG00000030583 NA NA 7qB1 NA NA chr7 30114000 TACxCAC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 78 0 0 26.306167 0.692308 0.02 -0.113997 4 9 112 255 60 60 0 0 CC 16.188874 54 0 1441 0 KEEP - Sipa1l3 YES UVC_1 chr7 46618522 46618522 G A intergenic "Gm21276(dist=98618),Gm5114(dist=44142)" NA NA intergenic "Gm16387(dist=98618),Gm5114(dist=44142)" NA NA intergenic "ENSMUSG00000070060(dist=79019),ENSMUSG00000053742(dist=44142)" NA NA 7qB3 "Score=0.975242;Name=No.101147,chr7:46467404" NA chr7 46618522 AAAxGGG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 510 1 24 18.226771 0.210526 0.02 -0.333224 30 8 851 229 60 48 0 0 GG 118.272782 396 1 11149 7 KEEP NA Gm21276 YES UVC_1 chr7 46664321 46664321 T A exonic Gm5114 nonsynonymous SNV NM_177890:c.A1243T:p.N415Y exonic Gm5114 nonsynonymous SNV uc009gkz.1:c.A1243T:p.N415Y exonic ENSMUSG00000053742 nonsynonymous SNV ENSMUST00000031488:c.A1243T:p.N415Y 7qB3 "Score=0.96265;Name=No.101122,chr7:39348778" NA chr7 46664321 TGTxTAG T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 285 0 51 26.330375 0.458333 0.02 -0.210127 13 11 362 283 57 57 0 0 TT 62.528705 208 0 5724 0 KEEP - Gm5114 NO UVC_1 chr7 48446858 48446858 A G intergenic "Gm4884(dist=146186),Gm5592(dist=92839)" NA NA intergenic "Gm4884(dist=146186),Gm5592(dist=92839)" NA NA intergenic "ENSMUSG00000078737(dist=33192),ENSMUSG00000049062(dist=55533)" NA NA 7qB3 "Score=0.965278;Name=No.83501,chr3:54285345" NA chr7 48446858 AAAxTAT A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 169 0 0 6.692587 0.176471 0.02 -0.157827 14 3 386 87 60 29 0 0 AA 39.096046 130 0 3536 0 KEEP NA Gm4884 NO UVC_1 chr7 48446888 48446888 G A intergenic "Gm4884(dist=146216),Gm5592(dist=92809)" NA NA intergenic "Gm4884(dist=146216),Gm5592(dist=92809)" NA NA intergenic "ENSMUSG00000078737(dist=33222),ENSMUSG00000049062(dist=55503)" NA NA 7qB3 "Score=0.965278;Name=No.83501,chr3:54285345" NA chr7 48446888 TATxGAA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 154 0 0 6.473433 0.214286 0.02 -0.131537 11 3 312 82 60 29 0 0 GG 37.302209 124 0 3540 0 KEEP NA Gm4884 YES UVC_1 chr7 52632579 52632579 G C exonic Snrnp70 nonsynonymous SNV NM_009224:c.C735G:p.S245R exonic Snrnp70 nonsynonymous SNV uc009guw.1:c.C735G:p.S245R exonic ENSMUSG00000063511 nonsynonymous SNV ENSMUST00000074575:c.C735G:p.S245R 7qB4 NA NA chr7 52632579 TCGxCTT G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 110 0 0 6.982192 0.230769 0.02 -0.114013 10 3 293 86 60 60 0 0 GG 26.156596 87 0 2370 0 KEEP - Snrnp70 NO UVC_1 chr7 52778413 52778413 G C exonic Ppp1r15a nonsynonymous SNV NM_008654:c.C1924G:p.P642A exonic Ppp1r15a nonsynonymous SNV uc009gvt.2:c.C1924G:p.P642A exonic ENSMUSG00000040435 nonsynonymous SNV ENSMUST00000167273:c.C1924G:p.P642A 7qB4 NA NA chr7 52778413 TGGxAAG G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 67 0 0 7.645171 0.333333 0.02 -0.078862 6 3 164 87 60 60 0 0 GG 15.580487 52 0 1453 0 KEEP + Ppp1r15a NO UVC_1 chr7 5835905 5835905 G A exonic Vmn1r64 synonymous SNV NM_207544:c.C240T:p.P80P exonic Vmn1r64 synonymous SNV uc009fal.1:c.C240T:p.P80P exonic ENSMUSG00000058399 synonymous SNV ENSMUST00000078475:c.C240T:p.P80P 7qA1 NA NA chr7 5835905 CCTxGGA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 156 0 0 12.423086 0.384615 0.02 -0.114002 8 5 230 138 60 60 0 0 GG 37.901933 126 0 3573 0 KEEP - Vmn1r64 YES UVC_1 chr7 5835906 5835906 G A exonic Vmn1r64 nonsynonymous SNV NM_207544:c.C239T:p.P80L exonic Vmn1r64 nonsynonymous SNV uc009fal.1:c.C239T:p.P80L exonic ENSMUSG00000058399 nonsynonymous SNV ENSMUST00000078475:c.C239T:p.P80L 7qA1 NA NA chr7 5835906 CTGxGAA G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162467 0.162467 1 158 0 0 12.723279 0.384615 0.02 -0.114008 8 5 232 141 60 60 0 0 GG 38.186545 127 0 3529 0 KEEP - Vmn1r64 YES UVC_1 chr7 5960687 5960687 T G exonic Vmn1r65 nonsynonymous SNV NM_030738:c.A149C:p.N50T exonic Vmn1r65 nonsynonymous SNV uc009fam.1:c.A149C:p.N50T exonic ENSMUSG00000066850 nonsynonymous SNV ENSMUST00000086338:c.A149C:p.N50T 7qA1 NA NA chr7 5960687 AAAxTAT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 1 47 0 0 8.569329 0.6 0.02 -0.043847 2 3 55 86 60 60 0 0 TT 11.428656 38 0 1037 0 KEEP - Vmn1r65 NO UVC_1 chr7 94103092 94103092 T G exonic Vmn2r78 nonsynonymous SNV NM_001105189:c.T1967G:p.F656C exonic Vmn2r78 nonsynonymous SNV uc012for.1:c.T1967G:p.F656C exonic ENSMUSG00000091962 nonsynonymous SNV ENSMUST00000170835:c.T1967G:p.F656C 7qD3 "Score=0.908333;Name=No.101517,chr7:93959464" NA chr7 94103092 TGTxCAC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 176 1 0 11.981172 0.238095 0.02 -0.184154 16 5 445 146 60 60 0 0 TT 42.362511 141 0 3852 0 KEEP + Vmn2r78 NO UVC_1 chr8 108047098 108047098 G C exonic Hsd11b2 nonsynonymous SNV NM_008289:c.G940C:p.A314P exonic Hsd11b2 nonsynonymous SNV uc009nde.1:c.G940C:p.A314P exonic ENSMUSG00000031891 nonsynonymous SNV ENSMUST00000034363:c.G940C:p.A314P 8qD3 NA NA chr8 108047098 ATGxCAT G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 69 0 0 11.748736 0.666667 0.02 -0.052619 2 4 57 115 60 60 0 0 GG 16.841425 56 0 1529 0 KEEP + Hsd11b2 NO UVC_1 chr8 108789350 108789350 C T exonic Smpd3 nonsynonymous SNV NM_021491:c.G470A:p.R157K exonic Smpd3 nonsynonymous SNV uc009nfx.1:c.G470A:p.R157K exonic ENSMUSG00000031906 nonsynonymous SNV ENSMUST00000067512:c.G470A:p.R157K 8qD3 NA NA chr8 108789350 ATTxTCT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 123 0 0 12.522414 0.357143 0.02 -0.12278 9 5 263 141 60 60 0 0 CC 27.074262 90 0 2572 0 KEEP - Smpd3 YES UVC_1 chr8 119481947 119481947 C T exonic Atmin synonymous SNV NM_177700:c.C2445T:p.V815V exonic Atmin synonymous SNV uc009nop.2:c.C2445T:p.V815V exonic ENSMUSG00000047388 synonymous SNV ENSMUST00000055162:c.C2151T:p.V717V 8qE1 NA NA chr8 119481947 TGTxTCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 47 0 0 10.522592 0.444444 0.02 -0.078928 5 4 145 113 60 60 0 0 CC 9.024904 30 0 860 0 KEEP + Atmin YES UVC_1 chr8 119481948 119481948 T C exonic Atmin nonsynonymous SNV NM_177700:c.T2446C:p.S816P exonic Atmin nonsynonymous SNV uc009nop.2:c.T2446C:p.S816P exonic ENSMUSG00000047388 nonsynonymous SNV ENSMUST00000055162:c.T2152C:p.S718P 8qE1 NA NA chr8 119481948 GTCxCCA T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 49 0 0 10.923066 0.444444 0.02 -0.078928 5 4 141 117 60 60 0 0 TT 9.324624 31 0 867 0 KEEP + Atmin NO UVC_1 chr8 127988247 127988247 A C exonic Sipa1l2 nonsynonymous SNV NM_001081337:c.T2903G:p.F968C exonic Sipa1l2 nonsynonymous SNV uc009nye.1:c.T2903G:p.F968C exonic ENSMUSG00000001995 nonsynonymous SNV ENSMUST00000047850:c.T2903G:p.F968C 8qE2 NA NA chr8 127988247 TCAxAGT A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 59 0 0 12.650362 0.625 0.02 -0.069833 3 5 83 126 60 60 0 0 AA 13.173033 44 0 1208 0 KEEP - Sipa1l2 NO UVC_1 chr8 20020448 20020448 G T upstream "2610005L07Rik,6820431F20Rik" NA NA upstream Gm10348 NA NA upstream ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020448 CGCxCCC G T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 182 0 11 6.511515 0.166667 0.02 -0.157803 15 3 405 86 60 60 0 0 GG 42.394179 141 0 3747 0 KEEP NA 2610005L07Rik NO UVC_1 chr8 23221628 23221628 A C intronic Nek5 NA NA intronic Nek5 NA NA intronic ENSMUSG00000037738 NA NA 8qA2 NA NA chr8 23221628 GCAxCTC A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 126 0 0 13.193072 0.454545 0.02 -0.096464 6 5 170 141 60 60 0 0 AA 25.950814 89 1 2445 7 KEEP - Nek5 NO UVC_1 chr8 23229308 23229308 T G exonic Nek5 nonsynonymous SNV NM_177898:c.A206C:p.N69T exonic Nek5 nonsynonymous SNV uc009lco.1:c.A206C:p.N69T exonic ENSMUSG00000037738 nonsynonymous SNV ENSMUST00000067722:c.A206C:p.N69T 8qA2 NA NA chr8 23229308 CCGxTCT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 131 0 0 12.422685 0.357143 0.02 -0.122765 9 5 249 140 60 60 0 0 TT 29.803814 101 1 2785 5 KEEP - Nek5 NO UVC_1 chr8 28221596 28221596 T C exonic Gpr124 nonsynonymous SNV NM_054044:c.T791C:p.L264P exonic Gpr124 nonsynonymous SNV uc009lhx.2:c.T791C:p.L264P exonic ENSMUSG00000031486 nonsynonymous SNV ENSMUST00000033876:c.T770C:p.L257P 8qA2 NA NA chr8 28221596 GCCxGCC T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036742 0.036766 0.999366 29 0 0 8.424645 0.5 0.02 -0.052623 3 3 89 88 60 60 0 0 TT 5.112468 17 0 464 0 KEEP + Gpr124 NO UVC_1 chr8 46037226 46037226 A G exonic Fat1 synonymous SNV NM_001081286:c.A1659G:p.E553E exonic Fat1 synonymous SNV uc009lon.2:c.A1659G:p.E553E exonic ENSMUSG00000070047 synonymous SNV ENSMUST00000093529:c.A1659G:p.E553E 8qB1.1 NA NA chr8 46037226 CGAxGTC A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 85 2 0 6.579814 0.1875 0.02 -0.140291 13 3 358 85 60 60 0 0 AA 18.621097 62 0 1686 0 KEEP + Fat1 NO UVC_1 chr8 46037335 46037335 A G exonic Fat1 nonsynonymous SNV NM_001081286:c.A1768G:p.T590A exonic Fat1 nonsynonymous SNV uc009lon.2:c.A1768G:p.T590A exonic ENSMUSG00000070047 nonsynonymous SNV ENSMUST00000093529:c.A1768G:p.T590A 8qB1.1 NA NA chr8 46037335 ATAxCCA A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 100 0 0 6.972823 0.2 0.02 -0.131535 12 3 332 88 60 60 0 0 AA 21.042754 70 0 1860 0 KEEP + Fat1 NO UVC_1 chr8 47082137 47082137 C T exonic Ufsp2 nonsynonymous SNV NM_138668:c.C1381T:p.L461F exonic Ufsp2 nonsynonymous SNV uc009lpq.1:c.C1048T:p.L350F exonic ENSMUSG00000031634 nonsynonymous SNV ENSMUST00000034051:c.C1381T:p.L461F 8qB1.1 NA NA chr8 47082137 GCTxTTT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036765 0.036766 0.999988 36 0 0 7.924915 0.5 0.02 -0.052601 3 3 80 83 60 60 0 0 CC 8.121601 27 0 768 0 KEEP + Ufsp2 YES UVC_1 chr8 70038275 70038275 C T intergenic "Nat2(dist=11798),Nat3(dist=9478)" NA NA intergenic "Nat2(dist=11798),Nat3(dist=9478)" NA NA exonic ENSMUSG00000030735 synonymous SNV ENSMUST00000032981:c.G1215A:p.K405K 8qB3.3 NA NA chr8 70038275 AAGxTTC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 67 0 8 7.432541 0.375 0.02 -0.070153 5 3 142 83 60 37 0 0 CC 13.837013 46 0 1299 0 KEEP NA Nat2 YES UVC_1 chr8 72609020 72609020 G C exonic Hapln4 nonsynonymous SNV NM_177900:c.G464C:p.G155A exonic Hapln4 nonsynonymous SNV uc009lyr.1:c.G464C:p.G155A exonic ENSMUSG00000007594 nonsynonymous SNV ENSMUST00000007738:c.G464C:p.G155A 8qB3.3 NA NA chr8 72609020 TCGxCAT G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 126 0 0 11.199733 0.5 0.02 -0.070159 4 4 113 117 60 60 0 0 GG 27.939618 93 0 2522 0 KEEP + Hapln4 NO UVC_1 chr8 72929949 72929949 C T intronic Crtc1 NA NA intronic Crtc1 NA NA intronic ENSMUSG00000003575 NA NA 8qB3.3 NA NA chr8 72929949 ATCxCAC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 151 0 0 21.09992 0.421053 0.02 -0.166615 11 8 308 229 60 60 0 0 CC 34.589699 115 0 3208 0 KEEP - Crtc1 YES UVC_1 chr8 72929950 72929950 C T intronic Crtc1 NA NA intronic Crtc1 NA NA intronic ENSMUSG00000003575 NA NA 8qB3.3 NA NA chr8 72929950 TCCxACA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 151 0 0 20.298982 0.421053 0.02 -0.166615 11 8 314 221 60 60 0 0 CC 34.579513 115 0 3216 0 KEEP - Crtc1 YES UVC_1 chr8 95518528 95518528 C T intronic Slc6a2 NA NA intronic Slc6a2 NA NA intronic ENSMUSG00000055368 NA NA 8qC5 NA NA chr8 95518528 TGCxTCA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036761 0.036766 0.999869 30 0 0 11.948802 0.666667 0.02 -0.052623 2 4 59 117 60 60 0 0 CC 6.315432 21 0 578 0 KEEP + Slc6a2 YES UVC_1 chr8 97000414 97000414 T G exonic Nlrc5 nonsynonymous SNV NM_001033207:c.T1241G:p.V414G exonic Nlrc5 nonsynonymous SNV uc009mwj.2:c.T545G:p.V182G ncRNA_exonic ENSMUSG00000074151 NA NA 8qC5 NA NA chr8 97000414 CAGxCAC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 101 0 0 12.473491 0.3125 0.02 -0.140164 11 5 298 144 60 60 0 0 TT 23.45685 78 0 2122 0 KEEP + Nlrc5 NO UVC_1 chr8 97563735 97563735 C T intronic Gpr97 NA NA intronic Gpr97 NA NA intronic ENSMUSG00000060470 NA NA 8qD1 NA NA chr8 97563735 CCTxCCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120436 0.120436 1 63 0 0 9.776903 0.363636 0.02 -0.096452 7 4 198 110 60 60 0 0 CC 12.913565 43 0 1186 0 KEEP + Gpr97 YES UVC_1 chr8 97862740 97862740 G C intronic Usb1 NA NA intronic AA960436 NA NA intronic ENSMUSG00000031792 NA NA 8qD1 NA NA chr8 97862740 TCAxTTC G C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 69 0 0 14.786292 0.625 0.02 -0.070158 3 5 83 147 60 60 0 0 GG 15.310511 51 0 1366 0 KEEP + Usb1 NO UVC_1 chr8 98221102 98221102 C T intergenic "Gins3(dist=52143),Ndrg4(dist=5835)" NA NA exonic Ndrg4 nonsynonymous SNV uc009mys.2:c.C46T:p.L16F exonic ENSMUSG00000036564 nonsynonymous SNV ENSMUST00000041318:c.C46T:p.L16F 8qD1 NA NA chr8 98221102 CTGxTCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 282 0 0 13.95685 0.3 0.02 -0.175391 14 6 406 164 60 60 0 0 CC 66.138021 220 0 6102 0 KEEP + Gins3 YES UVC_1 chr8_random 690820 690820 G A intergenic "Tsnax(dist=89305),NONE(dist=NONE)" NA NA intergenic "Tsnax(dist=89305),AK029792(dist=56894)" NA NA downstream ENSMUSG00000074455 NA NA NA "Score=0.989584;Name=No.105235,chr8_random:819725" NA chr8_random 690820 TTAxACT G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 745 1 117 8.437415 0.16 0.02 -0.219263 21 4 624 113 46 37 0 0 GG 192.514543 640 0 18378 0 KEEP NA Tsnax YES UVC_1 chr9 109225738 109225738 T G exonic Fbxw28 nonsynonymous SNV NM_001177419:c.A1303C:p.S435R exonic Fbxw28 nonsynonymous SNV uc009rsg.2:c.A1303C:p.S435R exonic ENSMUSG00000079284 nonsynonymous SNV ENSMUST00000112040:c.A1303C:p.S435R 9qF2 "Score=0.928854;Name=No.105615,chr9:109159899" NA chr9 109225738 AACxCGC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 225 1 2 8.665783 0.277778 0.02 -0.157785 13 5 379 109 60 60 0 0 TT 55.304684 184 0 5119 0 KEEP - Fbxw28 NO UVC_1 chr9 109281358 109281358 T A exonic Fbxw22 nonsynonymous SNV NM_001014395:c.A1358T:p.N453I exonic Fbxw22 nonsynonymous SNV uc012hbd.1:c.A941T:p.N314I exonic ENSMUSG00000070324 nonsynonymous SNV ENSMUST00000080626:c.A1358T:p.N453I 9qF2 "Score=0.91713;Name=No.105620,chr9:109195425" NA chr9 109281358 GGGxTGG T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 457 1 0 36.01162 0.416667 0.02 -0.31536 21 15 589 395 60 60 0 0 TT 102.245123 340 0 9284 0 KEEP - Fbxw22 NO UVC_1 chr9 109728855 109728855 C A intronic Spink8 NA NA intronic Spink8 NA NA intronic ENSMUSG00000050074 NA NA 9qF2 NA NA chr9 109728855 CCTxAGT C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 84 2 0 7.554484 0.428571 0.02 -0.070157 4 3 117 82 60 60 0 0 CC 20.757719 69 0 1989 0 KEEP + Spink8 NO UVC_1 chr9 20718326 20718326 G A intronic Dnmt1 NA NA intronic Dnmt1 NA NA intronic ENSMUSG00000004099 NA NA 9qA3 NA NA chr9 20718326 CCTxAAG G A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999997 42 1 0 15.108857 0.833333 0.02 -0.052616 1 5 30 139 60 60 0 0 GG 8.724378 29 0 837 0 KEEP - Dnmt1 YES UVC_1 chr9 20896318 20896318 T G exonic Raver1 nonsynonymous SNV NM_027911:c.A104C:p.E35A exonic Raver1 nonsynonymous SNV uc009okd.1:c.A104C:p.E35A exonic ENSMUSG00000010205 nonsynonymous SNV ENSMUST00000115486:c.A104C:p.E35A 9qA3 NA NA chr9 20896318 AACxCTT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 DBSNP COVERED 0.229173 0.229173 1 114 2 0 17.134252 0.466667 0.02 -0.131505 8 7 230 183 60 60 0 0 TT 22.852445 76 0 2079 0 KEEP - Raver1 NO UVC_1 chr9 21760486 21760486 T G intronic Swsap1 NA NA intronic 2310047B19Rik NA NA intronic ENSMUSG00000051238 NA NA 9qA3 "Score=0.969399;Name=No.80171,chr2:104396814" NA chr9 21760486 CAAxGGC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 67 0 0 7.632844 0.375 0.02 -0.07015 5 3 138 85 60 60 0 0 TT 14.421753 48 0 1259 0 KEEP + Swsap1 NO UVC_1 chr9 30910461 30910461 C T exonic St14 synonymous SNV NM_011176:c.G1113A:p.K371K exonic St14 synonymous SNV uc009ori.1:c.G1113A:p.K371K exonic ENSMUSG00000031995 synonymous SNV ENSMUST00000034478:c.G1113A:p.K371K 9qA4 NA NA chr9 30910461 TACxTTG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077327 0.077336 0.999892 41 0 0 10.999441 0.5 0.02 -0.078929 4 4 116 115 60 60 0 0 CC 6.916906 23 0 639 0 KEEP - St14 YES UVC_1 chr9 31666410 31666410 T C exonic Barx2 nonsynonymous SNV NM_013800:c.A406G:p.K136E exonic Barx2 nonsynonymous SNV uc009oru.1:c.A406G:p.K136E exonic ENSMUSG00000032033 nonsynonymous SNV ENSMUST00000116615:c.A406G:p.K136E 9qA4 NA NA chr9 31666410 GTTxCTT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 114 2 0 7.09227 0.176471 0.02 -0.149082 14 3 394 91 60 60 0 0 TT 25.56454 85 0 2347 0 KEEP - Barx2 NO UVC_1 chr9 37580788 37580788 T C exonic Olfr875 synonymous SNV NM_146749:c.T543C:p.L181L exonic Olfr875 synonymous SNV uc009ovm.2:c.T543C:p.L181L exonic ENSMUSG00000058628 synonymous SNV ENSMUST00000080634:c.T543C:p.L181L 9qA4 NA NA chr9 37580788 TCTxCCC T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 313 0 0 41.080704 0.454545 0.02 -0.289405 18 15 508 438 60 60 0 0 TT 70.869434 236 0 6463 0 KEEP + Olfr875 NO UVC_1 chr9 44568024 44568024 C T intronic Arcn1 NA NA intronic Arcn1 NA NA intronic ENSMUSG00000032096 NA NA 9qA5.2 NA NA chr9 44568024 AATxCAG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 60 0 0 22.062203 0.571429 0.02 -0.122773 6 8 172 224 60 60 0 0 CC 12.63431 42 0 1195 0 KEEP - Arcn1 YES UVC_1 chr9 49316852 49316852 C T intronic Ncam1 NA NA intronic Ncam1 NA NA intronic ENSMUSG00000039542 NA NA 9qA5.3 NA NA chr9 49316852 TTCxCAG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999909 27 0 0 10.029581 1 0.02 -0.02631 0 3 0 86 0 60 0 0 CC 7.184818 24 0 653 0 KEEP - Ncam1 YES UVC_1 chr9 54509495 54509495 C A UTR5 Acsbg1 NA NA UTR5 Acsbg1 NA NA UTR5 ENSMUSG00000032281 NA NA 9qA5.3 NA NA chr9 54509495 CACxGAA C A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043787 0.043787 0.999999 46 0 0 15.268766 0.714286 0.02 -0.061367 2 5 45 147 60 60 0 0 CC 10.812048 36 0 859 0 KEEP - Acsbg1 NO UVC_1 chr9 61255308 61255308 C G intronic Tle3 NA NA intronic Tle3 NA NA intronic ENSMUSG00000032280 NA NA 9qB NA NA chr9 61255308 TCGxCGG C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 135 2 0 6.779538 0.1875 0.02 -0.140307 13 3 373 87 60 60 0 0 CC 27.029257 90 0 2433 0 KEEP + Tle3 NO UVC_1 chr9 64349308 64349308 T C intronic Megf11 NA NA intronic Megf11 NA NA intronic ENSMUSG00000036466 NA NA 9qC NA NA chr9 64349308 CTGxCTT T C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 211 0 0 8.895438 0.173913 0.02 -0.201702 19 4 540 116 60 60 0 0 TT 47.76864 159 0 4266 0 KEEP + Megf11 NO UVC_1 chr9 7102292 7102292 A G intronic Dync2h1 NA NA ncRNA_intronic Dnchc2 NA NA intronic ENSMUSG00000047193 NA NA 9qA1 NA NA chr9 7102292 AAAxGAA A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019969 0.019982 0.999366 26 0 0 13.906724 1 0.02 -0.035084 0 4 0 120 0 60 0 0 AA 5.113627 17 0 477 0 KEEP - Dync2h1 NO UVC_1 chr9 75009273 75009273 T G exonic Myo5a nonsynonymous SNV NM_010864:c.T1949G:p.L650R exonic Myo5a nonsynonymous SNV uc009qrr.1:c.T1949G:p.L650R exonic ENSMUSG00000034593 nonsynonymous SNV ENSMUST00000123128:c.T1949G:p.L650R 9qD NA NA chr9 75009273 CCCxTAA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 191 0 0 8.670825 0.285714 0.02 -0.122761 10 4 290 104 60 60 0 0 TT 43.313908 144 0 4027 0 KEEP + Myo5a NO UVC_1 chr9 75235916 75235916 T G exonic Mapk6 nonsynonymous SNV NM_015806:c.A2106C:p.K702N exonic Mapk6 nonsynonymous SNV uc009qsd.1:c.A2106C:p.K702N exonic ENSMUSG00000042688 nonsynonymous SNV ENSMUST00000049355:c.A2106C:p.K702N 9qD NA NA chr9 75235916 AGAxTTC T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 102 0 13 6.773393 0.214286 0.02 -0.122769 11 3 308 85 60 36 0 0 TT 21.068171 77 1 2085 19 KEEP - Mapk6 NO UVC_1 chr9 88815934 88815934 A T intergenic "9330159M07Rik(dist=62226),Bcl2a1a(dist=35824)" NA NA intergenic "AK076783(dist=37542),Bcl2a1a(dist=35824)" NA NA ncRNA_intronic ENSMUSG00000091564 NA NA 9qE3.1 "Score=0.985162;Name=No.105539,chr9:89041145" NA chr9 88815934 AAAxTGT A T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 112 0 15 6.706756 0.25 0.02 -0.1049 9 3 230 82 37 36 0 0 AA 25.260224 84 0 2294 0 KEEP NA 9330159M07Rik NO UVC_1 chrX 123348819 123348819 C T exonic 4932411N23Rik synonymous SNV NM_177705:c.G1194A:p.E398E exonic 4932411N23Rik synonymous SNV uc009ueq.1:c.G1194A:p.E398E exonic ENSMUSG00000058670 synonymous SNV ENSMUST00000081074:c.G1194A:p.E398E XqE3 NA NA chrX 123348819 ATTxTCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 1 59 0 0 17.505925 0.75 0.02 -0.070154 2 6 59 166 60 60 0 0 CC 12.63497 42 0 1207 0 KEEP - 4932411N23Rik YES UVC_1 chrX 12717232 12717232 C T intronic Usp9x NA NA intronic Usp9x NA NA intronic ENSMUSG00000031010 NA NA XqA1.1 NA NA chrX 12717232 TTTxAGA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 56 2 0 15.144772 0.833333 0.02 -0.052463 1 5 13 139 60 60 0 0 CC 12.634567 42 0 1198 0 KEEP + Usp9x YES UVC_1 chrX 165656895 165656895 T G intronic Arhgap6 NA NA intronic Arhgap6 NA NA intronic ENSMUSG00000031355 NA NA XqF5 NA NA chrX 165656895 TAGxTTT T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 1 238 0 0 8.324791 0.5 0.02 -0.052618 3 3 84 87 60 60 0 0 TT 56.234302 187 0 5077 0 KEEP + Arhgap6 NO UVC_1 chrX 34945238 34945238 A G exonic Rhox2e nonsynonymous SNV NM_001085348:c.A74G:p.K25R exonic Rhox2e nonsynonymous SNV uc009syy.1:c.A74G:p.K25R exonic ENSMUSG00000063709 nonsynonymous SNV ENSMUST00000072167:c.A74G:p.K25R XqA3.3 "Score=0.987539;Name=No.112628,chrX:34820573" NA chrX 34945238 TAAxGAC A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL COVERED 0.196312 0.196312 1 138 0 10 6.773506 0.214286 0.02 -0.12276 11 3 311 85 60 37 0 0 AA 31.583667 105 0 2942 0 KEEP + Rhox2e NO UVC_1 chrX 35984373 35984373 A C exonic C1galt1c1 nonsynonymous SNV NM_021550:c.T922G:p.L308V exonic C1galt1c1 nonsynonymous SNV uc009tag.2:c.T922G:p.L308V exonic ENSMUSG00000048970 nonsynonymous SNV ENSMUST00000168425:c.T922G:p.L308V XqA3.3 NA NA chrX 35984373 GTAxGAA A C Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 54 0 0 7.143328 0.333333 0.02 -0.078921 6 3 169 82 60 60 0 0 AA 12.031374 40 0 1110 0 KEEP - C1galt1c1 NO UVC_1 chrX 47923455 47923455 C T ncRNA_exonic 6720401G13Rik NA NA ncRNA_exonic 6720401G13Rik NA NA ncRNA_intronic ENSMUSG00000085396 NA NA XqA5 NA NA chrX 47923455 AATxCCA C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0 0 0.999988 38 0 0 6.653007 1 0.02 -0.017539 0 2 0 57 0 60 0 0 CC 8.118227 27 0 750 0 KEEP - 6720401G13Rik YES UVC_1 chrX 71143183 71143183 A G exonic Arhgap4 nonsynonymous SNV NM_001162424:c.T1696C:p.S566P exonic Arhgap4 nonsynonymous SNV uc009tnb.2:c.T628C:p.S210P exonic ENSMUSG00000031389 nonsynonymous SNV ENSMUST00000114406:c.T1195C:p.S399P XqA7.3 NA NA chrX 71143183 CTGxGTC A G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024074 0.024074 0.999998 44 0 0 8.368793 0.6 0.02 -0.043849 2 3 59 84 60 60 0 0 AA 9.925291 33 0 912 0 KEEP - Arhgap4 NO UVC_1 chrX 7137418 7137418 C T exonic Ppp1r3f nonsynonymous SNV NM_138605:c.G1534A:p.E512K exonic Ppp1r3f nonsynonymous SNV uc009slj.1:c.G1534A:p.E512K exonic ENSMUSG00000039556 nonsynonymous SNV ENSMUST00000045924:c.G1534A:p.E512K XqA1.1 NA NA chrX 7137418 CCTxCCC C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019982 0.019982 1 76 1 0 8.853085 0.75 0.02 -0.035079 1 3 30 84 60 60 0 0 CC 17.446516 58 0 1637 0 KEEP - Ppp1r3f YES UVC_1 chrX 71482562 71482562 T G exonic Flna nonsynonymous SNV NM_010227:c.A2843C:p.N948T exonic Flna nonsynonymous SNV uc009tny.1:c.A2843C:p.N948T exonic ENSMUSG00000031328 nonsynonymous SNV ENSMUST00000033699:c.A2843C:p.N948T XqA7.3 NA NA chrX 71482562 ACAxTGA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077336 0.077336 1 80 0 0 7.443431 0.333333 0.02 -0.078924 6 3 169 85 60 60 0 0 TT 17.718611 59 0 1601 0 KEEP - Flna NO UVC_1 chrX 71518209 71518209 C T intronic Rpl10 NA NA intronic Rpl10 NA NA intronic ENSMUSG00000008682 NA NA XqA7.3 NA NA chrX 71518209 TTGxTCT C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019979 0.019982 0.999879 30 0 0 9.528715 1 0.02 -0.035072 0 3 0 81 0 60 0 0 CC 6.618215 22 0 630 0 KEEP + Rpl10 YES UVC_1 chrX 71518210 71518210 T A intronic Rpl10 NA NA intronic Rpl10 NA NA intronic ENSMUSG00000008682 NA NA XqA7.3 NA NA chrX 71518210 TGCxCTG T A Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019979 0.019982 0.999879 30 0 0 9.528762 1 0.02 -0.035072 0 3 0 81 0 60 0 0 TT 6.617735 22 0 619 0 KEEP + Rpl10 NO UVC_1 chrX 71518211 71518211 C T intronic Rpl10 NA NA intronic Rpl10 NA NA intronic ENSMUSG00000008682 NA NA XqA7.3 NA NA chrX 71518211 GCTxTGG C T Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.019979 0.019982 0.999879 30 0 0 9.729119 1 0.02 -0.035076 0 3 0 83 0 60 0 0 CC 6.618617 22 0 638 0 KEEP + Rpl10 YES UVC_1 chrX 7206967 7206967 T G exonic Cacna1f nonsynonymous SNV NM_019582:c.T4340G:p.F1447C exonic Cacna1f nonsynonymous SNV uc012hei.1:c.T686G:p.F229C exonic ENSMUSG00000031142 nonsynonymous SNV ENSMUST00000156047:c.T488G:p.F163C XqA1.1 NA NA chrX 7206967 ACTxTGA T G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099721 0.099721 1 111 2 0 32.864206 1 0.02 -0.087692 0 10 0 281 0 60 0 0 TT 25.857788 86 0 2375 0 KEEP + Cacna1f NO UVC_1 chrX 96342839 96342839 C G exonic Efnb1 nonsynonymous SNV NM_010110:c.C1011G:p.S337R exonic Efnb1 nonsynonymous SNV uc009tvi.1:c.C1011G:p.S337R exonic ENSMUSG00000031217 nonsynonymous SNV ENSMUST00000052839:c.C1011G:p.S337R XqC3 NA NA chrX 96342839 GAGxCCG C G Ot9356_Rerun_Karl-Rudolf.Muehlbauer_301-276_rc_mEx_1.0G_07082013-reads1-index18_GTCCGC_L004 7-E185-R-P_1 0 NOVEL UNCOVERED 0.036766 0.036766 0.999997 38 0 0 13.667733 0.833333 0.02 -0.052296 1 5 29 125 60 60 0 0 CC 9.323427 31 0 856 0 KEEP + Efnb1 NO UVC_2 chr10 105279884 105279884 A C exonic Ccdc59 synonymous SNV NM_025602:c.A441C:p.P147P exonic Ccdc59 synonymous SNV uc007gyp.1:c.A441C:p.P147P exonic ENSMUSG00000019897 synonymous SNV ENSMUST00000020049:c.A441C:p.P147P 10qD1 NA NA chr10 105279884 GCCxGAA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.29196 0.292001 0.999859 41 0 0 16.934545 0.411765 0.02 -0.149066 10 7 301 186 60 60 0 0 AA 5.41401 18 0 498 0 KEEP + Ccdc59 NO UVC_2 chr10 109153509 109153509 T A intronic Nav3 NA NA intronic Nav3 NA NA intronic ENSMUSG00000020181 NA NA 10qD1 NA NA chr10 109153509 GACxAAG T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139812 0.139832 0.99986 35 0 0 16.046652 0.5 0.02 -0.105225 6 6 183 168 60 60 0 0 TT 5.714566 19 0 526 0 KEEP - Nav3 NO UVC_2 chr10 114588355 114588355 G A intronic Tph2 NA NA intronic Tph2 NA NA intronic ENSMUSG00000006764 NA NA 10qD2 NA NA chr10 114588355 AGAxAAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668451 0.668523 0.999892 54 0 0 46.272804 0.551724 0.02 -0.254258 13 16 384 473 60 60 0 0 GG 6.918272 23 0 654 0 KEEP - Tph2 YES UVC_2 chr10 115944230 115944230 G A exonic Cnot2 nonsynonymous SNV NM_028082:c.C130T:p.P44S exonic Cnot2 nonsynonymous SNV uc007hca.2:c.C130T:p.P44S exonic ENSMUSG00000020166 nonsynonymous SNV ENSMUST00000164088:c.C130T:p.P44S 10qD2 NA NA chr10 115944230 TTGxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693667 0.693668 0.999998 70 1 0 29.786018 0.366667 0.02 -0.263125 19 11 570 331 60 60 0 0 GG 9.925467 33 0 926 0 KEEP - Cnot2 YES UVC_2 chr10 116232744 116232744 G A intronic Myrfl NA NA intronic Gm239 NA NA intronic ENSMUSG00000034057 NA NA 10qD2 NA NA chr10 116232744 TGGxTTG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 94 2 0 81.37999 0.608696 0.02 -0.403439 18 28 539 814 60 60 0 0 GG 12.630265 42 0 1140 0 KEEP - Myrfl YES UVC_2 chr10 116493036 116493036 T C intronic Cct2 NA NA intronic Cct2 NA NA intronic ENSMUSG00000034024 NA NA 10qD2 NA NA chr10 116493036 TTTxCCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760818 0.760887 0.999909 62 0 0 22.697147 0.272727 0.02 -0.289417 24 9 715 268 60 60 0 0 TT 7.217171 24 0 657 0 KEEP - Cct2 NO UVC_2 chr10 118296905 118296905 G A exonic Dyrk2 synonymous SNV NM_001014390:c.C1503T:p.C501C exonic Dyrk2 synonymous SNV uc007hea.1:c.C1503T:p.C501C exonic ENSMUSG00000028630 synonymous SNV ENSMUST00000004281:c.C1503T:p.C501C 10qD2 NA NA chr10 118296905 ATCxCAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 102 0 0 10.278085 0.111111 0.02 -0.393891 40 5 1064 147 60 60 0 0 GG 14.42901 48 0 1253 0 KEEP - Dyrk2 YES UVC_2 chr10 118654967 118654967 A T intronic Cand1 NA NA intronic Cand1 NA NA intronic ENSMUSG00000020114 NA NA 10qD2 NA NA chr10 118654967 TACxCCC A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 145 2 0 36.649354 0.285714 0.02 -0.429778 35 14 1049 427 60 60 0 0 AA 20.148942 67 0 1809 0 KEEP - Cand1 NO UVC_2 chr10 122457541 122457541 A T intronic Mon2 NA NA intronic Mon2 NA NA intronic ENSMUSG00000034602 NA NA 10qD2 NA NA chr10 122457541 AAAxAGG A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835714 0.835716 0.999997 70 0 0 60.634073 0.594595 0.02 -0.324439 15 22 449 610 60 60 0 0 AA 9.324295 31 0 861 0 KEEP - Mon2 NO UVC_2 chr10 126441789 126441789 G A exonic Avil nonsynonymous SNV NM_009635:c.G103A:p.G35S exonic Avil nonsynonymous SNV uc007hhl.2:c.G103A:p.G35S exonic ENSMUSG00000025432 nonsynonymous SNV ENSMUST00000129173:c.G103A:p.G35S 10qD3 NA NA chr10 126441789 CACxGCA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 57 0 0 6.606962 0.125 0.02 -0.210429 21 3 580 91 60 60 0 0 GG 7.512689 25 0 634 0 KEEP + Avil YES UVC_2 chr10 126733187 126733187 A G UTR3 Ddit3 NA NA UTR3 Ddit3 NA NA UTR3 ENSMUSG00000025408 NA NA 10qD3 NA NA chr10 126733187 TGTxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 203 0 0 39.000964 0.228571 0.02 1.278593 54 16 1507 477 60 60 0 0 AA 30.302813 104 1 2736 8 KEEP + Ddit3 NO UVC_2 chr10 126976743 126976743 A T exonic Lrp1 nonsynonymous SNV NM_008512:c.T13241A:p.V4414D exonic Lrp1 nonsynonymous SNV uc007hjx.1:c.T13241A:p.V4414D exonic ENSMUSG00000040249 nonsynonymous SNV ENSMUST00000049149:c.T13241A:p.V4414D 10qD3 NA NA chr10 126976743 CTAxCAA A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 394 1 0 75.905631 0.202532 0.02 4.390044 126 32 3676 952 60 60 0 0 AA 52.02543 173 0 4711 0 KEEP - Lrp1 NO UVC_2 chr10 127096477 127096477 T C intronic Stat6 NA NA intronic Stat6 NA NA intronic ENSMUSG00000002147 NA NA 10qD3 NA NA chr10 127096477 CCTxCCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 422 0 0 97.660451 0.308333 0.02 2.929767 83 37 2463 1122 60 60 0 0 TT 70.027745 233 0 6372 0 KEEP + Stat6 NO UVC_2 chr10 127179942 127179942 T G exonic Zbtb39 nonsynonymous SNV NM_198035:c.T1328G:p.F443C exonic Zbtb39 nonsynonymous SNV uc007hkl.1:c.T1328G:p.F443C exonic ENSMUSG00000044617 nonsynonymous SNV ENSMUST00000054287:c.T1328G:p.F443C 10qD3 NA NA chr10 127179942 TCTxTCC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 67 0 0 8.658134 0.111111 0.02 -0.315709 32 4 939 122 60 60 0 0 TT 9.02319 30 0 831 0 KEEP + Zbtb39 NO UVC_2 chr10 128386243 128386243 T C exonic Itga7 nonsynonymous SNV NM_008398:c.T2384C:p.V795A exonic Itga7 nonsynonymous SNV uc007hpa.1:c.T2384C:p.V795A exonic ENSMUSG00000025348 nonsynonymous SNV ENSMUST00000074708:c.T2396C:p.V799A 10qD3 NA NA chr10 128386243 CGGxCTC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 277 2 0 61.530759 0.240741 0.02 2.838132 82 26 2365 750 60 60 0 0 TT 39.989796 133 0 3585 0 KEEP + Itga7 NO UVC_2 chr10 129890735 129890735 G A exonic Vmn2r86 synonymous SNV NM_001103365:c.C346T:p.L116L exonic Vmn2r86 synonymous SNV uc009vad.1:c.C346T:p.L116L exonic ENSMUSG00000092162 synonymous SNV ENSMUST00000170257:c.C346T:p.L116L 10qD3 "Score=0.932;Name=No.6058,chr10:129821815" NA chr10 129890735 CCAxATT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 188 0 0 71.405132 0.355263 0.02 1.225598 49 27 1493 800 60 60 0 0 GG 29.171378 97 0 2769 0 KEEP - Vmn2r86 YES UVC_2 chr10 14437051 14437051 T G ncRNA_intronic 1700016L04Rik NA NA ncRNA_intronic AK006045 NA NA intronic ENSMUSG00000019867 NA NA 10qA2 NA NA chr10 14437051 AGCxTAC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 214 1 0 53.578125 0.338235 0.02 1.197444 45 23 1356 615 60 60 0 0 TT 32.483175 108 0 3015 0 KEEP + 1700016L04Rik NO UVC_2 chr10 14489966 14489966 G A exonic Nmbr synonymous SNV NM_008703:c.G777A:p.E259E exonic Nmbr nonsynonymous SNV uc011xam.1:c.G428A:p.R143K exonic ENSMUSG00000019865 synonymous SNV ENSMUST00000020015:c.G777A:p.E259E 10qA2 NA NA chr10 14489966 GGAxACA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 247 0 0 124.394427 0.530864 0.02 1.181829 38 43 1125 1282 60 60 0 0 GG 39.398885 131 0 3743 0 KEEP + Nmbr YES UVC_2 chr10 17562779 17562779 G A exonic Txlnb synonymous SNV NM_138628:c.G1551A:p.E517E exonic Txlnb synonymous SNV uc007elv.1:c.G1551A:p.E517E exonic ENSMUSG00000039891 synonymous SNV ENSMUST00000037964:c.G1551A:p.E517E 10qA2 NA NA chr10 17562779 AGAxTTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 261 1 0 141.41376 0.592593 0.02 1.280739 33 48 986 1423 60 60 0 0 GG 45.392665 151 0 4226 0 KEEP + Txlnb YES UVC_2 chr10 18504340 18504340 G A exonic Gm4922 synonymous SNV NM_177706:c.C439T:p.L147L exonic Gm4922 synonymous SNV uc007emq.1:c.C439T:p.L147L exonic ENSMUSG00000044624 synonymous SNV ENSMUST00000055107:c.C439T:p.L147L 10qA3 NA NA chr10 18504340 TTAxGTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 137 0 0 106.589276 0.537313 0.02 1.304619 31 36 913 1095 60 60 0 0 GG 17.748613 59 0 1686 0 KEEP + Gm4922 YES UVC_2 chr10 20158565 20158565 G A exonic Pde7b synonymous SNV NM_013875:c.C444T:p.F148F exonic Pde7b synonymous SNV uc007eoa.2:c.C123T:p.F41F exonic ENSMUSG00000019990 synonymous SNV ENSMUST00000164195:c.C600T:p.F200F 10qA3 NA NA chr10 20158565 CTTxAAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162465 0.162467 0.999988 51 0 0 10.339307 0.307692 0.02 -0.113295 9 4 258 119 60 60 0 0 GG 8.109438 27 0 747 0 KEEP - Pde7b YES UVC_2 chr10 21716827 21716827 C T exonic Sgk1 synonymous SNV NM_001161847:c.C624T:p.H208H exonic Sgk1 synonymous SNV uc007eow.2:c.C747T:p.H249H exonic ENSMUSG00000019970 synonymous SNV ENSMUST00000124350:c.C624T:p.H208H 10qA3 NA NA chr10 21716827 GCAxATC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 189 0 0 8.620213 0.066667 0.02 1.037433 70 5 2085 142 60 60 0 0 CC 25.56686 85 0 2401 0 KEEP + Sgk1 YES UVC_2 chr10 22831493 22831493 A C intronic Eya4 NA NA intronic Eya4 NA NA intronic ENSMUSG00000010461 NA NA 10qA3 NA NA chr10 22831493 AACxGGG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 129 0 0 34.032339 0.340426 0.02 -0.412044 31 16 955 395 60 60 0 0 AA 17.747206 59 0 1655 0 KEEP - Eya4 NO UVC_2 chr10 24525657 24525657 G A intronic Enpp3 NA NA intronic Enpp3 NA NA intronic ENSMUSG00000019989 NA NA 10qA4 NA NA chr10 24525657 TTAxACA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 105 0 0 39.609084 0.451613 0.02 -0.271908 17 14 522 422 60 60 0 0 GG 15.629748 52 0 1461 0 KEEP - Enpp3 YES UVC_2 chr10 24525681 24525681 G C exonic Enpp3 nonsynonymous SNV NM_134005:c.C932G:p.A311G exonic Enpp3 nonsynonymous SNV uc007era.1:c.C932G:p.A311G exonic ENSMUSG00000019989 nonsynonymous SNV ENSMUST00000020169:c.C932G:p.A311G 10qA4 NA NA chr10 24525681 TCAxCTT G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 104 0 0 21.904233 0.25 0.02 -0.315704 27 9 791 264 60 60 0 0 GG 15.629807 52 0 1455 0 KEEP - Enpp3 NO UVC_2 chr10 3211981 3211981 C T exonic Cnksr3 nonsynonymous SNV NM_172546:c.C907T:p.P303S exonic Cnksr3 nonsynonymous SNV uc007efc.1:c.C184T:p.P62S exonic ENSMUSG00000015202 nonsynonymous SNV ENSMUST00000150282:c.C184T:p.P62S 10qA1 NA NA chr10 3211981 GCCxCAC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 97 0 0 40.056339 0.482759 0.02 -0.263103 15 14 438 421 60 60 0 0 CC 14.602769 52 1 1447 9 KEEP + Cnksr3 YES UVC_2 chr10 36694564 36694564 T G exonic Hdac2 nonsynonymous SNV NM_008229:c.T7G:p.Y3D exonic Hdac2 nonsynonymous SNV uc007eve.1:c.T7G:p.Y3D exonic ENSMUSG00000019777 nonsynonymous SNV ENSMUST00000019911:c.T7G:p.Y3D 10qB1 NA NA chr10 36694564 GCGxACA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.120419 0.120436 0.99986 34 2 0 13.694413 0.454545 0.02 -0.096439 6 5 159 146 60 60 0 0 TT 5.709345 19 0 485 0 KEEP + Hdac2 NO UVC_2 chr10 40791316 40791316 A G exonic Gpr6 synonymous SNV NM_199058:c.T75C:p.A25A exonic Gpr6 synonymous SNV uc011xcz.1:c.T75C:p.A25A exonic ENSMUSG00000046922 synonymous SNV ENSMUST00000061796:c.T75C:p.A25A 10qB1 NA NA chr10 40791316 TGTxGCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 105 0 0 39.079332 0.348837 0.02 -0.377107 28 15 809 440 60 60 0 0 AA 13.468638 45 0 1167 0 KEEP - Gpr6 NO UVC_2 chr10 40791317 40791317 G A exonic Gpr6 nonsynonymous SNV NM_199058:c.C74T:p.A25V exonic Gpr6 nonsynonymous SNV uc011xcz.1:c.C74T:p.A25V exonic ENSMUSG00000046922 nonsynonymous SNV ENSMUST00000061796:c.C74T:p.A25V 10qB1 NA NA chr10 40791317 GTAxCCG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 101 0 0 37.265212 0.357143 0.02 -0.36815 27 15 746 420 60 60 0 0 GG 13.23336 44 0 1221 0 KEEP - Gpr6 YES UVC_2 chr10 41276627 41276627 G A intronic Ccdc162 NA NA intronic Ccdc162 NA NA intronic ENSMUSG00000075225 NA NA 10qB2 NA NA chr10 41276627 CCTxAGG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 47 0 0 19.637675 0.466667 0.02 -0.131568 8 7 248 208 60 60 0 0 GG 7.52093 25 0 720 0 KEEP - Ccdc162 YES UVC_2 chr10 5118922 5118922 G A intergenic "Syne1(dist=109330),Syne1(dist=32912)" NA NA intergenic "Syne1(dist=96766),Syne1(dist=32912)" NA NA exonic ENSMUSG00000019769 nonsynonymous SNV ENSMUST00000056571:c.G14884A:p.E4962K 10qA1 NA NA chr10 5118922 CTGxAGC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 47 0 0 18.202529 0.28 0.02 -0.219278 18 7 549 213 60 60 0 0 GG 5.113895 17 0 483 0 KEEP NA Syne1 YES UVC_2 chr10 57961910 57961910 T G intronic Ccdc138 NA NA intronic Ccdc138 NA NA intronic ENSMUSG00000038010 NA NA 10qB4 NA NA chr10 57961910 TTCxTGG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 211 3 0 64.065149 0.367089 0.02 1.100883 50 29 1520 728 60 60 0 0 TT 29.17749 97 0 2721 0 KEEP + Ccdc138 NO UVC_2 chr10 59342393 59342393 T C UTR5 Dnajb12 NA NA UTR5 "Dnajb12,mDj10" NA NA UTR5 ENSMUSG00000020109 NA NA 10qB4 NA NA chr10 59342393 GCCxCCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 77 0 0 6.441781 0.242424 0.02 -0.282999 25 8 655 105 60 60 0 0 TT 8.729101 31 1 812 5 KEEP + Dnajb12 NO UVC_2 chr10 59899502 59899502 G C exonic Cdh23 synonymous SNV NM_001252635:c.C1635G:p.V545V exonic Cdh23 synonymous SNV uc007fev.1:c.C1635G:p.V545V exonic ENSMUSG00000012819 synonymous SNV ENSMUST00000073242:c.C1641G:p.V547V 10qB4 NA NA chr10 59899502 CCGxACC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353901 0.353947 0.999869 47 0 0 26.854967 0.526316 0.02 -0.166588 9 10 274 278 60 60 0 0 GG 6.317074 21 0 595 0 KEEP - Cdh23 NO UVC_2 chr10 60235133 60235133 G A exonic Unc5b synonymous SNV NM_029770:c.C1968T:p.T656T exonic Unc5b synonymous SNV uc007ffd.1:c.C957T:p.T319T exonic ENSMUSG00000020099 synonymous SNV ENSMUST00000105458:c.C1935T:p.T645T 10qB4 NA NA chr10 60235133 GAGxGTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 73 0 0 29.731581 0.315789 0.02 -0.33325 26 12 783 343 60 60 0 0 GG 8.420866 28 0 767 0 KEEP - Unc5b YES UVC_2 chr10 62084205 62084205 G A exonic Ddx50 nonsynonymous SNV NM_053183:c.C1813T:p.L605F exonic Ddx50 nonsynonymous SNV uc007fhp.1:c.C1813T:p.L605F exonic ENSMUSG00000020076 nonsynonymous SNV ENSMUST00000171983:c.C1618T:p.L540F 10qB4 NA NA chr10 62084205 TAAxTTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 125 1 0 95.426736 0.6 0.02 1.41012 22 33 660 958 60 60 0 0 GG 15.943489 53 0 1513 0 KEEP - Ddx50 YES UVC_2 chr10 74106619 74106619 A G exonic Pcdh15 unknown UNKNOWN exonic Pcdh15 nonsynonymous SNV uc011xgd.1:c.A1609G:p.K537E exonic ENSMUSG00000052613 nonsynonymous SNV ENSMUST00000152819:c.A733G:p.K245E 10qB5.3 NA NA chr10 74106619 GTGxAAG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.999859 48 1 0 43.497569 0.555556 0.02 -0.236795 12 15 354 444 60 60 0 0 AA 5.414368 18 0 504 0 KEEP + Pcdh15 NO UVC_2 chr10 74598670 74598670 T A exonic Bcr nonsynonymous SNV NM_001081412:c.T1781A:p.V594E exonic Bcr nonsynonymous SNV uc007fqb.2:c.T1781A:p.V594E exonic ENSMUSG00000009681 nonsynonymous SNV ENSMUST00000164107:c.T1781A:p.V594E 10qC1 NA NA chr10 74598670 TTGxGGA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 183 2 0 12.498456 0.1 0.02 1.365998 54 6 1576 181 60 60 0 0 TT 28.560498 95 0 2554 0 KEEP + Bcr NO UVC_2 chr10 74598699 74598699 G C exonic Bcr nonsynonymous SNV NM_001081412:c.G1810C:p.A604P exonic Bcr nonsynonymous SNV uc007fqb.2:c.G1810C:p.A604P exonic ENSMUSG00000009681 nonsynonymous SNV ENSMUST00000164107:c.G1810C:p.A604P 10qC1 NA NA chr10 74598699 ACTxCAG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 170 2 0 12.886821 0.107143 0.02 1.40103 50 6 1483 183 60 60 0 0 GG 27.372509 91 0 2560 0 KEEP + Bcr NO UVC_2 chr10 74617724 74617724 A G exonic Bcr synonymous SNV NM_001081412:c.A2316G:p.L772L exonic Bcr synonymous SNV uc007fqb.2:c.A2316G:p.L772L exonic ENSMUSG00000009681 synonymous SNV ENSMUST00000164107:c.A2316G:p.L772L 10qC1 NA NA chr10 74617724 ACTxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 121 0 0 12.613907 0.125 0.02 -0.420958 42 6 1212 176 60 60 0 0 AA 13.960031 55 1 1439 24 KEEP + Bcr NO UVC_2 chr10 75854964 75854964 A C exonic Pcnt nonsynonymous SNV NM_001282992:c.T5111G:p.L1704W exonic Pcnt nonsynonymous SNV uc007fuj.1:c.T2363G:p.L788W exonic ENSMUSG00000001151 nonsynonymous SNV ENSMUST00000001179:c.T5111G:p.L1704W 10qC1 NA NA chr10 75854964 GCCxAGG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 287 1 0 23.374768 0.100917 0.02 2.927332 98 11 2900 336 60 60 0 0 AA 41.487006 138 0 3785 0 KEEP - Pcnt NO UVC_2 chr10 75920662 75920662 A C exonic 2610028H24Rik nonsynonymous SNV NM_029816:c.A608C:p.E203A exonic 2610028H24Rik nonsynonymous SNV uc007fun.2:c.A608C:p.E203A exonic ENSMUSG00000009114 nonsynonymous SNV ENSMUST00000092406:c.A608C:p.E203A 10qC1 NA NA chr10 75920662 CTGxAAA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 58 0 0 11.366934 0.277778 0.02 -0.157856 13 5 389 136 60 60 0 0 AA 9.625333 32 0 892 0 KEEP + 2610028H24Rik NO UVC_2 chr10 76042766 76042766 G A exonic Ftcd nonsynonymous SNV NM_080845:c.G488A:p.G163D exonic Ftcd nonsynonymous SNV uc007fut.2:c.G488A:p.G163D exonic ENSMUSG00000001155 nonsynonymous SNV ENSMUST00000001183:c.G488A:p.G163D 10qC1 NA NA chr10 76042766 TTGxCCC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 159 0 0 52.145917 0.291667 0.02 1.260796 51 21 1496 610 60 60 0 0 GG 20.748172 69 0 1895 0 KEEP + Ftcd YES UVC_2 chr10 77646885 77646885 A G exonic Pwp2 nonsynonymous SNV NM_029546:c.T49C:p.C17R exonic "Pwp2,wdp103" nonsynonymous SNV uc007fxk.1:c.T49C:p.C17R exonic ENSMUSG00000032834 nonsynonymous SNV ENSMUST00000042556:c.T49C:p.C17R 10qC1 NA NA chr10 77646885 CACxCCG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 138 0 0 15.071654 0.159091 0.02 -0.385882 37 7 1077 201 60 60 0 0 AA 21.941062 73 0 1938 0 KEEP - Pwp2 NO UVC_2 chr10 77982848 77982848 C A intergenic "Pdxk(dist=55155),Ilvbl(dist=54397)" NA NA intergenic "Pdxk(dist=55155),Ilvbl(dist=54397)" NA NA exonic ENSMUSG00000071186 nonsynonymous SNV ENSMUST00000095474:c.C497A:p.T166N 10qC1 NA NA chr10 77982848 AGAxCTG C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 340 1 0 129.554255 0.34965 0.02 2.629186 93 50 2768 1459 60 60 0 0 CC 48.629776 162 0 4412 0 KEEP NA Pdxk NO UVC_2 chr10 78446932 78446932 T C exonic Olfr1352 synonymous SNV NM_147071:c.T396C:p.Y132Y exonic Olfr1352 synonymous SNV uc007fyl.2:c.T396C:p.Y132Y exonic ENSMUSG00000046493 synonymous SNV ENSMUST00000058991:c.T396C:p.Y132Y 10qC1 NA NA chr10 78446932 TTAxACT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 144 0 0 39.034797 0.253968 0.02 1.339787 47 16 1334 469 60 60 0 0 TT 22.251204 74 0 1960 0 KEEP + Olfr1352 NO UVC_2 chr10 79150810 79150810 G A UTR3 Cdc34 NA NA UTR3 Cdc34 NA NA UTR3 ENSMUSG00000020307 NA NA 10qC1 NA NA chr10 79150810 CACxTCC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 164 0 0 36.766123 0.216216 0.02 1.144946 58 16 1561 459 60 60 0 0 GG 22.237092 74 0 1905 0 KEEP + Cdc34 YES UVC_2 chr10 79221989 79221989 G A intronic Rnf126 NA NA intronic Rnf126 NA NA intronic ENSMUSG00000035890 NA NA 10qC1 NA NA chr10 79221989 AGAxGAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 88 2 0 57.400725 0.5 0.02 -0.350771 20 20 584 599 60 60 0 0 GG 11.129176 37 0 1034 0 KEEP - Rnf126 YES UVC_2 chr10 79594757 79594757 C G exonic Dos nonsynonymous SNV NM_001195268:c.G1373C:p.S458T exonic Dos nonsynonymous SNV uc007gbw.1:c.G572C:p.S191T exonic ENSMUSG00000035640 nonsynonymous SNV ENSMUST00000105368:c.G572C:p.S191T 10qC1 NA NA chr10 79594757 GAGxTAT C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 213 0 0 17.568774 0.09 0.02 2.898601 91 9 2711 264 60 60 0 0 CC 28.848526 96 0 2634 0 KEEP - Dos NO UVC_2 chr10 79804142 79804142 G A exonic Adamtsl5 nonsynonymous SNV NM_001113548:c.C1216T:p.R406W exonic Adamtsl5 nonsynonymous SNV uc011xir.1:c.C1216T:p.R406W exonic ENSMUSG00000043822 nonsynonymous SNV ENSMUST00000095446:c.C1216T:p.R406W 10qC1 NA NA chr10 79804142 CCCxCAC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 206 2 0 37.665657 0.213333 0.02 1.33411 59 16 1476 469 60 60 0 0 GG 30.249444 101 0 2428 0 KEEP - Adamtsl5 YES UVC_2 chr10 80129923 80129923 T C exonic Mknk2 nonsynonymous SNV NM_021462:c.A1168G:p.K390E exonic Mknk2 nonsynonymous SNV uc007gee.1:c.A1168G:p.K390E exonic ENSMUSG00000020190 nonsynonymous SNV ENSMUST00000105337:c.A682G:p.K228E 10qC1 NA NA chr10 80129923 GCTxGGA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851881 0.851984 0.999879 69 2 0 34.715179 0.368421 0.02 -0.333235 24 14 715 389 60 60 0 0 TT 6.617126 22 0 609 0 KEEP - Mknk2 NO UVC_2 chr10 80328343 80328343 C A intronic Sppl2b NA NA intronic "3110056O03Rik,Sppl2b" NA NA intronic ENSMUSG00000035206 NA NA 10qC1 NA NA chr10 80328343 GCTxTCC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 260 2 0 49.753839 0.188525 0.02 2.518506 99 23 2961 644 60 60 0 0 CC 31.858468 106 0 2972 0 KEEP + Sppl2b NO UVC_2 chr10 80328409 80328409 C A exonic Sppl2b nonsynonymous SNV NM_175195:c.C1212A:p.D404E exonic "3110056O03Rik,Sppl2b" nonsynonymous SNV uc007gff.1:c.C753A:p.D251E exonic ENSMUSG00000035206 nonsynonymous SNV ENSMUST00000035597:c.C1212A:p.D404E 10qC1 NA NA chr10 80328409 TGAxCGG C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 276 2 0 63.172974 0.217742 0.02 2.697096 97 27 2864 785 60 60 0 0 CC 35.172445 117 0 3201 0 KEEP + Sppl2b NO UVC_2 chr10 80494431 80494431 C A exonic Slc39a3 synonymous SNV NM_134135:c.G225T:p.L75L exonic Slc39a3 synonymous SNV uc007gfq.1:c.G225T:p.L75L exonic ENSMUSG00000046822 synonymous SNV ENSMUST00000168076:c.G225T:p.L75L 10qC1 NA NA chr10 80494431 GCTxAGC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582905 0.58293 0.999957 54 0 0 27.1478 0.384615 0.02 -0.228023 16 10 480 299 60 60 0 0 CC 7.821344 26 0 746 0 KEEP - Slc39a3 NO UVC_2 chr10 80724720 80724720 G A exonic Matk nonsynonymous SNV NM_010768:c.G1010A:p.G337D exonic Matk nonsynonymous SNV uc007ggt.1:c.G890A:p.G297D exonic ENSMUSG00000004933 nonsynonymous SNV ENSMUST00000105328:c.G890A:p.G297D 10qC1 NA NA chr10 80724720 AAGxCAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 194 0 0 154.321459 0.504587 0.02 2.828403 54 55 1606 1609 60 60 0 0 GG 23.158029 77 0 2124 0 KEEP + Matk YES UVC_2 chr10 80732294 80732294 G A exonic Apba3 nonsynonymous SNV NM_018758:c.G572A:p.R191Q exonic Apba3 nonsynonymous SNV uc007ggz.2:c.G572A:p.R191Q exonic ENSMUSG00000004931 nonsynonymous SNV ENSMUST00000057798:c.G572A:p.R191Q 10qC1 NA NA chr10 80732294 GCCxGGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 389 3 0 210.956059 0.471338 0.02 4.398744 83 74 2307 2228 60 60 0 0 GG 51.099019 170 0 4439 0 KEEP + Apba3 YES UVC_2 chr10 89973438 89973438 T C exonic Anks1b unknown UNKNOWN exonic Anks1b synonymous SNV uc011xlm.1:c.T1854C:p.S618S exonic ENSMUSG00000058589 synonymous SNV ENSMUST00000099368:c.T1854C:p.S618S 10qC2 NA NA chr10 89973438 GTCxCCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 94 0 0 27.428698 0.305556 0.02 -0.315538 25 11 747 318 60 60 0 0 TT 13.23417 44 0 1225 0 KEEP + Anks1b NO UVC_2 chr10 89973628 89973628 G A exonic Anks1b unknown UNKNOWN exonic Anks1b nonsynonymous SNV uc011xlm.1:c.G2044A:p.E682K exonic ENSMUSG00000058589 nonsynonymous SNV ENSMUST00000099368:c.G2044A:p.E682K 10qC2 NA NA chr10 89973628 CTTxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 58 0 0 31.83815 0.387097 0.02 -0.271904 19 12 589 351 60 60 0 0 GG 7.521015 25 0 722 0 KEEP + Anks1b YES UVC_2 chr10 94310255 94310255 G A intronic Plxnc1 NA NA intronic Plxnc1 NA NA intronic ENSMUSG00000074785 NA NA 10qC2 NA NA chr10 94310255 CAAxGGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 79 1 0 65.77333 0.65625 0.02 -0.280681 11 21 331 647 60 60 0 0 GG 11.426871 38 0 1055 0 KEEP - Plxnc1 YES UVC_2 chr10 95004262 95004262 A G intronic Ube2n NA NA ncRNA_intronic Ubc13 NA NA intronic ENSMUSG00000074781 NA NA 10qC2 "Score=0.996457;Name=No.10419,chr5:76660935" NA chr10 95004262 GTTxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 88 0 0 29.393292 0.354839 0.02 -0.271838 20 11 569 329 60 60 0 0 AA 14.70781 49 0 1277 0 KEEP + Ube2n NO UVC_2 chr10 97072105 97072105 G A exonic Kera nonsynonymous SNV NM_008438:c.G691A:p.E231K exonic Kera nonsynonymous SNV uc007gxa.1:c.G691A:p.E231K exonic ENSMUSG00000019932 nonsynonymous SNV ENSMUST00000105286:c.G691A:p.E231K 10qC3 NA NA chr10 97072105 CCTxAAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 117 0 0 65.442987 0.522727 0.02 -0.385921 21 23 647 677 60 60 0 0 GG 17.44838 58 0 1668 0 KEEP + Kera YES UVC_2 chr10 98457313 98457313 A G exonic Atp2b1 nonsynonymous SNV NM_026482:c.A1001G:p.Q334R exonic Atp2b1 nonsynonymous SNV uc007gxf.2:c.A1001G:p.Q334R exonic ENSMUSG00000019943 nonsynonymous SNV ENSMUST00000020107:c.A1001G:p.Q334R 10qC3 NA NA chr10 98457313 TGCxACC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522098 0.522161 0.999879 53 0 0 15.247474 0.291667 0.02 -0.210446 17 7 505 182 60 60 0 0 AA 6.615762 22 0 597 0 KEEP + Atp2b1 NO UVC_2 chr10 99981487 99981487 T G exonic Cep290 nonsynonymous SNV NM_146009:c.T2798G:p.L933R exonic Cep290 nonsynonymous SNV uc011xmr.1:c.T2798G:p.L933R exonic ENSMUSG00000019971 nonsynonymous SNV ENSMUST00000099316:c.T2777G:p.L926R 10qD1 NA NA chr10 99981487 AACxTGG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229028 0.229173 0.999366 34 0 0 6.97245 0.2 0.02 -0.131565 12 3 364 88 60 60 0 0 TT 5.113687 17 0 478 0 KEEP + Cep290 NO UVC_2 chr11 100940128 100940128 T G intronic Hsd17b1 NA NA intronic Hsd17b1 NA NA intronic ENSMUSG00000019301 NA NA 11qD NA NA chr11 100940128 CGAxAGG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967292 0.967425 0.999863 76 1 0 13.391058 0.115385 0.02 1.535108 46 6 1310 186 60 60 0 0 TT 4.252192 19 1 507 13 KEEP + Hsd17b1 NO UVC_2 chr11 101275217 101275217 G A intronic Aarsd1 NA NA intronic Aarsd1 NA NA intronic ENSMUSG00000075528 NA NA 11qD NA NA chr11 101275217 CCCxTCT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 229 4 0 42.766482 0.222222 0.02 1.173604 63 18 1586 528 60 60 1 0 GG 33.605057 112 0 2756 0 KEEP - Aarsd1 YES UVC_2 chr11 102342841 102342841 T C exonic Gpatch8 nonsynonymous SNV NM_001159492:c.A1184G:p.H395R exonic Gpatch8 nonsynonymous SNV uc007lsb.2:c.A542G:p.H181R exonic ENSMUSG00000034621 nonsynonymous SNV ENSMUST00000143842:c.A1184G:p.H395R 11qE1 NA NA chr11 102342841 TAGxGGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 188 0 0 68.705179 0.308511 0.02 0.969572 65 29 1857 801 60 60 0 0 TT 24.030816 80 0 2080 0 KEEP - Gpatch8 NO UVC_2 chr11 104581768 104581768 C T intergenic "Itgb3(dist=49983),Efcab3(dist=371765)" NA NA intergenic "Itgb3(dist=49983),Efcab3(dist=346381)" NA NA exonic ENSMUSG00000040838 nonsynonymous SNV ENSMUST00000148007:c.C902T:p.S301F 11qE1 NA NA chr11 104581768 TCTxCAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934491 0.934492 0.999999 85 0 0 154.863401 0.978261 0.02 -0.403462 1 45 31 1355 60 60 0 0 CC 10.829743 36 0 1028 0 KEEP NA Itgb3 YES UVC_2 chr11 105209146 105209146 C G intronic Mrc2 NA NA intronic Mrc2 NA NA intronic ENSMUSG00000020695 NA NA 11qE1 NA NA chr11 105209146 GGGxTAC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 240 2 0 254.437959 0.95 0.02 1.289467 4 76 119 2251 60 60 0 0 CC 36.873056 123 0 3287 0 KEEP + Mrc2 NO UVC_2 chr11 106032266 106032266 A G splicing "Strada(NM_001252448:exon9:c.581+2T>C,NM_001252449:exon7:c.470+2T>C,NM_028126:exon7:c.470+2T>C)" NA NA splicing "Strada(uc007lyf.1:exon7:c.470+2T>C,uc007lyg.1:exon9:c.581+2T>C,uc011ygi.1:exon7:c.470+2T>C)" NA NA splicing "ENSMUSG00000069631(ENSMUST00000063715:exon6:c.470+2T>C,ENSMUST00000106871:exon8:c.581+2T>C,ENSMUST00000007444:exon9:c.581+2T>C,ENSMUST00000103072:exon7:c.470+2T>C,ENSMUST00000152008:exon8:c.470+2T>C)" NA NA 11qE1 NA NA chr11 106032266 CACxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 92 2 0 13.77458 0.179487 0.02 -0.342022 32 7 955 184 60 60 0 0 AA 12.327536 41 0 1096 0 KEEP - Strada NO UVC_2 chr11 106116036 106116036 A G intronic Ftsj3 NA NA intronic Ftsj3 NA NA intronic ENSMUSG00000020706 NA NA 11qE1 NA NA chr11 106116036 AGGxAGA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 94 0 0 43.626877 0.347826 0.02 -0.403453 30 16 894 489 60 60 0 0 AA 11.74034 41 1 1099 5 KEEP - Ftsj3 NO UVC_2 chr11 106173681 106173681 G T exonic Cd79b synonymous SNV NM_008339:c.C501A:p.L167L exonic Cd79b synonymous SNV uc007lyt.2:c.C501A:p.L167L exonic ENSMUSG00000040592 synonymous SNV ENSMUST00000044228:c.C681A:p.L227L 11qE1 NA NA chr11 106173681 GATxAGG G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760805 0.760887 0.999892 65 0 0 16.136548 0.212121 0.02 -0.289398 26 7 772 202 60 60 0 0 GG 6.919166 23 0 662 0 KEEP - Cd79b NO UVC_2 chr11 109996829 109996829 A C intronic Abca9 NA NA intronic Abca9 NA NA intronic ENSMUSG00000041797 NA NA 11qE1 NA NA chr11 109996829 AGTxCAG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.95449 0.954491 0.999999 86 0 0 8.196672 0.081633 0.02 -0.429718 45 4 1293 123 60 60 0 0 AA 10.525004 35 0 934 0 KEEP - Abca9 NO UVC_2 chr11 116050865 116050865 T C exonic Acox1 synonymous SNV NM_001271898:c.A294G:p.E98E exonic Acox1 synonymous SNV uc007mkm.1:c.A294G:p.E98E exonic ENSMUSG00000020777 nonsynonymous SNV ENSMUST00000148601:c.A25G:p.T9A 11qE2 NA NA chr11 116050865 AGGxTCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.420544 0.423478 0.993072 33 0 0 18.034555 0.333333 0.02 -0.184179 14 7 414 205 60 60 0 0 TT 3.308248 11 0 300 0 KEEP - Acox1 NO UVC_2 chr11 116158855 116158855 G C intronic Exoc7 NA NA UTR5 Exoc7 NA NA intronic ENSMUSG00000020792 NA NA 11qE2 NA NA chr11 116158855 ACAxTGG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 152 0 0 21.341281 0.166667 0.02 1.169453 50 10 1465 283 60 60 0 0 GG 20.453863 68 0 1926 0 KEEP - Exoc7 NO UVC_2 chr11 116630548 116630548 C T exonic St6galnac1 synonymous SNV NM_011371:c.G252A:p.K84K exonic St6galnac1 synonymous SNV uc007mme.1:c.G252A:p.K84K exonic ENSMUSG00000009588 synonymous SNV ENSMUST00000009732:c.G252A:p.K84K 11qE2 "Score=0.955491;Name=No.13049,chr11:116600300" NA chr11 116630548 TTTxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 313 0 0 397.498624 0.966667 0.02 2.81355 4 116 120 3498 60 60 0 0 CC 45.092012 153 1 4373 8 KEEP - St6galnac1 YES UVC_2 chr11 116807885 116807885 T G exonic Mgat5b nonsynonymous SNV NM_172948:c.T619G:p.F207V exonic Mgat5b nonsynonymous SNV uc007mmu.1:c.T619G:p.F207V exonic ENSMUSG00000043857 nonsynonymous SNV ENSMUST00000054088:c.T619G:p.F207V 11qE2 NA NA chr11 116807885 TGGxTCT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 111 0 0 148.36164 1 0.02 -0.385837 0 44 0 1274 0 60 0 0 TT 14.631966 51 1 1354 6 KEEP + Mgat5b NO UVC_2 chr11 118123410 118123410 T C exonic Usp36 nonsynonymous SNV NM_001033528:c.A3200G:p.K1067R exonic Usp36 nonsynonymous SNV uc007mot.2:c.A2681G:p.K894R exonic ENSMUSG00000033909 nonsynonymous SNV ENSMUST00000092382:c.A3200G:p.K1067R 11qE2 NA NA chr11 118123410 CTCxTCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 87 2 0 19.525488 0.210526 0.02 -0.333302 30 8 910 242 60 60 0 0 TT 12.031189 40 0 1115 0 KEEP - Usp36 NO UVC_2 chr11 118136287 118136287 T C exonic Usp36 nonsynonymous SNV NM_001033528:c.A1018G:p.T340A exonic Usp36 nonsynonymous SNV uc007mot.2:c.A499G:p.T167A exonic ENSMUSG00000033909 nonsynonymous SNV ENSMUST00000092382:c.A1018G:p.T340A 11qE2 NA NA chr11 118136287 TGGxGAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 589 4 0 174.993666 0.344828 0.02 5.663848 133 70 3825 1984 60 60 0 0 TT 85.69122 289 1 7609 10 KEEP - Usp36 NO UVC_2 chr11 118890084 118890084 A G exonic Cbx2 nonsynonymous SNV NM_007623:c.A1160G:p.N387S exonic Cbx2 nonsynonymous SNV uc007mpt.1:c.A1160G:p.N387S exonic ENSMUSG00000025577 nonsynonymous SNV ENSMUST00000026662:c.A1160G:p.N387S 11qE2 NA NA chr11 118890084 CAAxCAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 98 2 0 38.731494 0.388889 0.02 -0.315743 22 14 650 425 60 60 0 0 AA 15.638999 52 0 1419 0 KEEP + Cbx2 NO UVC_2 chr11 119403914 119403914 A T exonic Nptx1 nonsynonymous SNV NM_008730:c.T1172A:p.V391E exonic Nptx1 nonsynonymous SNV uc007mqv.1:c.T1172A:p.V391E exonic ENSMUSG00000025582 nonsynonymous SNV ENSMUST00000026670:c.T1172A:p.V391E 11qE2 NA NA chr11 119403914 TACxCCT A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 87 0 0 29.665915 0.307692 0.02 -0.341675 27 12 767 344 60 60 0 0 AA 11.700623 39 0 980 0 KEEP - Nptx1 NO UVC_2 chr11 120208151 120208151 T G intronic Actg1 NA NA intronic Actg1 NA NA intronic ENSMUSG00000062825 NA NA 11qE2 "Score=0.994048;Name=No.15302,chr4:103235990" NA chr11 120208151 CATxTAG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 79 0 0 11.122641 0.147059 0.02 -0.298211 29 5 873 149 60 60 0 0 TT 10.527898 35 0 980 0 KEEP - Actg1 NO UVC_2 chr11 120628466 120628466 C G intergenic "Cbr2(dist=35131),Rfng(dist=13593)" NA NA intergenic "AK195902(dist=3329),Rfng(dist=13593)" NA NA ncRNA_exonic ENSMUSG00000083618 NA NA 11qE2 NA NA chr11 120628466 CCAxCCA C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.098994 0.099721 0.992708 31 0 5 30.28011 0.9 0.02 -0.087712 1 9 30 274 46 60 0 0 CC 3.608948 12 0 326 0 KEEP NA Cbr2 NO UVC_2 chr11 121703803 121703803 C T exonic Ptchd3 nonsynonymous SNV NM_029049:c.C2204T:p.P735L exonic Ptchd3 nonsynonymous SNV uc007mwf.2:c.C2204T:p.P735L exonic ENSMUSG00000039198 nonsynonymous SNV ENSMUST00000036690:c.C2204T:p.P735L 11qE2 NA NA chr11 121703803 TTCxCTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781058 0.78106 0.999997 65 0 0 114.678947 0.970588 0.02 -0.298222 1 33 29 1009 60 60 0 0 CC 8.72319 29 0 813 0 KEEP + Ptchd3 YES UVC_2 chr11 12278164 12278164 G A exonic Cobl synonymous SNV NM_001282993:c.C444T:p.T148T exonic Cobl synonymous SNV uc007ibd.2:c.C444T:p.T148T exonic ENSMUSG00000020173 synonymous SNV ENSMUST00000046755:c.C444T:p.T148T 11qA1 NA NA chr11 12278164 CTTxGTT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.45615 0.457757 0.99649 42 0 0 9.38015 0.181818 0.02 -0.192929 18 4 531 120 60 60 0 0 GG 4.51231 15 0 427 0 KEEP - Cobl YES UVC_2 chr11 18918218 18918218 A G intronic Meis1 NA NA intronic Meis1 NA NA intronic ENSMUSG00000020160 NA NA 11qA3.1 NA NA chr11 18918218 AATxCGT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 175 2 0 39.709738 0.231884 0.02 1.385962 53 16 1531 483 60 60 0 0 AA 20.749793 69 0 1853 0 KEEP - Meis1 NO UVC_2 chr11 3046175 3046175 G A exonic Sfi1 nonsynonymous SNV NM_030207:c.C1462T:p.R488C exonic Sfi1 nonsynonymous SNV uc007hrs.1:c.C448T:p.R150C exonic ENSMUSG00000023764 nonsynonymous SNV ENSMUST00000093407:c.C778T:p.R260C 11qA1 NA NA chr11 3046175 AACxCAC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1464 2 0 28.3544 0.043165 0.02 10.641376 399 18 10503 519 70 70 0 0 GG 259.730689 865 0 21325 0 KEEP + Sfi1 YES UVC_2 chr11 30761413 30761413 A G exonic Psme4 synonymous SNV NM_134013:c.A4881G:p.S1627S exonic Psme4 synonymous SNV uc007ihx.1:c.A4881G:p.S1627S exonic ENSMUSG00000040850 synonymous SNV ENSMUST00000041231:c.A4881G:p.S1627S 11qA4 NA NA chr11 30761413 GTCxCTA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 58 0 0 19.762072 0.347826 0.02 -0.210479 15 8 447 224 60 60 0 0 AA 8.420911 28 0 760 0 KEEP + Psme4 NO UVC_2 chr11 32642519 32642519 C T exonic Fbxw11 nonsynonymous SNV NM_001271349:c.C1426T:p.H476Y exonic Fbxw11 nonsynonymous SNV uc007ika.1:c.C1426T:p.H476Y exonic ENSMUSG00000020271 nonsynonymous SNV ENSMUST00000082313:c.C1567T:p.H523Y 11qA4 NA NA chr11 32642519 TCCxATG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 121 1 0 117.339961 0.971429 0.02 -0.306989 1 34 31 1031 60 60 0 0 CC 21.947363 73 0 2052 0 KEEP + Fbxw11 YES UVC_2 chr11 3292945 3292945 C T exonic Limk2 nonsynonymous SNV NM_010718:c.G91A:p.E31K exonic Limk2 nonsynonymous SNV uc007hsu.1:c.G91A:p.E31K exonic ENSMUSG00000020451 nonsynonymous SNV ENSMUST00000101638:c.G91A:p.E31K 11qA1 NA NA chr11 3292945 CTTxATT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 46 2 0 54.725788 1 0.02 -0.149097 0 16 0 471 0 60 0 0 CC 6.317675 21 0 607 0 KEEP - Limk2 YES UVC_2 chr11 33101418 33101418 T C exonic Tlx3 nonsynonymous SNV NM_019916:c.A737G:p.D246G exonic Tlx3 nonsynonymous SNV uc007ikg.2:c.A737G:p.D246G exonic ENSMUSG00000040610 nonsynonymous SNV ENSMUST00000037746:c.A737G:p.D246G 11qA4 NA NA chr11 33101418 GCGxCGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 97 2 0 8.937237 0.16 0.02 -0.219237 21 4 604 118 60 60 0 0 TT 15.601877 52 0 1356 0 KEEP - Tlx3 NO UVC_2 chr11 48883319 48883319 G C intronic Olfr56 NA NA intronic Olfr56 NA NA ncRNA_exonic ENSMUSG00000083178 NA NA 11qB1.2 "Score=0.929308;Name=No.12938,chr11:48724729" NA chr11 48883319 CCTxGAC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 81 0 1 71.453801 0.6 0.02 -0.35082 16 24 479 717 60 60 0 0 GG 10.819749 36 0 1005 0 KEEP + Olfr56 NO UVC_2 chr11 50079587 50079587 T G exonic Maml1 nonsynonymous SNV NM_175334:c.A1262C:p.N421T exonic Maml1 nonsynonymous SNV uc007isd.2:c.A1262C:p.N421T exonic ENSMUSG00000050567 nonsynonymous SNV ENSMUST00000059458:c.A1262C:p.N421T 11qB1.3 NA NA chr11 50079587 GGAxTCT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993701 0.993703 0.999999 110 0 0 209.119868 0.96875 0.02 1.421218 2 62 42 1832 60 60 0 0 TT 10.490146 35 0 929 0 KEEP + Maml1 NO UVC_2 chr11 51416343 51416343 A G exonic Phykpl stoploss SNV NM_028398:c.A1404G:p.X468W exonic Agxt2l2 stoploss SNV uc007ity.1:c.A1404G:p.X468W exonic ENSMUSG00000020359 stoploss SNV ENSMUST00000167797:c.A1404G:p.X468W 11qB1.3 NA NA chr11 51416343 TTGxCAC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.93449 0.934492 0.999997 83 0 0 23.814009 0.217391 0.02 -0.403436 36 10 1052 295 60 60 0 0 AA 9.32262 31 0 836 0 KEEP + Phykpl NO UVC_2 chr11 53277658 53277658 C T exonic Shroom1 nonsynonymous SNV NM_027917:c.C902T:p.P301L exonic Shroom1 nonsynonymous SNV uc007iwb.1:c.C902T:p.P301L exonic ENSMUSG00000018387 nonsynonymous SNV ENSMUST00000018531:c.C902T:p.P301L 11qB1.3 NA NA chr11 53277658 GTCxCTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 127 0 0 221.481613 0.970149 0.02 1.394722 2 65 61 1944 60 60 0 0 CC 14.679173 49 0 1298 0 KEEP + Shroom1 YES UVC_2 chr11 53942565 53942565 G C exonic P4ha2 nonsynonymous SNV NM_001136076:c.G1387C:p.A463P exonic P4ha2 nonsynonymous SNV uc007ixj.2:c.G1387C:p.A463P exonic ENSMUSG00000018906 nonsynonymous SNV ENSMUST00000174616:c.G1387C:p.A463P 11qB1.3 NA NA chr11 53942565 GAAxCTG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 176 2 0 48.51009 0.292308 0.02 1.322072 46 19 1392 565 60 60 0 0 GG 24.118933 84 1 2337 10 KEEP + P4ha2 NO UVC_2 chr11 58941621 58941621 C T exonic Obscn nonsynonymous SNV NM_001171512:c.G2792A:p.G931E exonic Obscn nonsynonymous SNV uc007jdb.2:c.G2792A:p.G931E exonic ENSMUSG00000061462 nonsynonymous SNV ENSMUST00000047441:c.G2792A:p.G931E 11qB1.3 NA NA chr11 58941621 TCCxCAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 206 13 95 43.532246 0.823529 0.02 -0.35079 3 14 82 403 23 36 0 0 CC 36.388763 121 0 3337 0 KEEP - Obscn YES UVC_2 chr11 58943128 58943128 C T exonic Obscn nonsynonymous SNV NM_199152:c.G2591A:p.G864E exonic Obscn nonsynonymous SNV uc011xvl.1:c.G2591A:p.G864E exonic ENSMUSG00000061462 nonsynonymous SNV ENSMUST00000052872:c.G2591A:p.G864E 11qB1.3 NA NA chr11 58943128 TCCxCAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 181 32 40 25.003249 0.171875 0.02 1.225867 53 11 1536 325 60 36 0 0 CC 27.652525 92 0 2517 0 KEEP - Obscn YES UVC_2 chr11 59568528 59568528 C T exonic Mprip synonymous SNV NM_012027:c.C2077T:p.L693L exonic Mprip synonymous SNV uc007jes.2:c.C292T:p.L98L exonic ENSMUSG00000005417 synonymous SNV ENSMUST00000133861:c.C2035T:p.L679L 11qB1.3 NA NA chr11 59568528 CTTxTAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.25975 0.260965 0.995343 34 0 0 55.226419 1 0.02 -0.140332 0 16 0 476 0 60 0 0 CC 4.211605 14 0 402 0 KEEP + Mprip YES UVC_2 chr11 60533331 60533331 T A exonic Flii nonsynonymous SNV NM_022009:c.A1640T:p.Y547F exonic Flii nonsynonymous SNV uc007jgh.1:c.A1640T:p.Y547F exonic ENSMUSG00000002812 nonsynonymous SNV ENSMUST00000002889:c.A1640T:p.Y547F 11qB2 NA NA chr11 60533331 CAGxAGT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 175 0 0 8.602484 0.050505 0.02 0.9262 94 5 2675 148 60 60 0 0 TT 18.282455 61 0 1586 0 KEEP - Flii NO UVC_2 chr11 6520893 6520893 T G exonic Tbrg4 nonsynonymous SNV NM_001130457:c.A581C:p.K194T exonic Tbrg4 nonsynonymous SNV uc007hyz.2:c.A581C:p.K194T exonic ENSMUSG00000000384 nonsynonymous SNV ENSMUST00000000394:c.A581C:p.K194T 11qA1 NA NA chr11 6520893 TCCxTCA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 90 0 0 36.609491 0.355556 0.02 -0.403355 29 16 870 417 60 60 0 0 TT 11.128613 37 0 1025 0 KEEP - Tbrg4 NO UVC_2 chr11 68740192 68740192 C T exonic Odf4 synonymous SNV NM_145746:c.G174A:p.L58L exonic Odf4 synonymous SNV uc007joj.2:c.G174A:p.L58L exonic ENSMUSG00000032921 synonymous SNV ENSMUST00000038932:c.G174A:p.L58L 11qB3 NA NA chr11 68740192 GAGxAGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 132 0 0 38.864682 0.269841 0.02 1.232764 46 17 1349 467 60 60 0 0 CC 17.444619 58 0 1606 0 KEEP - Odf4 YES UVC_2 chr11 69500637 69500637 C T intronic "BC096441,Tnfsf12" NA NA intronic "BC096441,Tnfsf12" NA NA ncRNA_intronic ENSMUSG00000085890 NA NA 11qB3 NA NA chr11 69500637 CCTxATC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 117 0 0 223.706382 0.985075 0.02 1.304577 1 66 30 1945 60 60 0 0 CC 13.837983 46 0 1317 0 KEEP - BC096441 YES UVC_2 chr11 69729586 69729586 C G exonic Gps2 nonsynonymous SNV NM_019726:c.C776G:p.A259G exonic Gps2 nonsynonymous SNV uc007jsp.1:c.C776G:p.A259G exonic ENSMUSG00000023170 nonsynonymous SNV ENSMUST00000057884:c.C776G:p.A259G 11qB3 NA NA chr11 69729586 ATGxCAA C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 259 0 0 65.328993 0.228814 0.02 2.749641 91 27 2685 800 60 60 0 0 CC 33.964571 113 0 3064 0 KEEP + Gps2 NO UVC_2 chr11 70163046 70163046 C T exonic Alox15 synonymous SNV NM_009660:c.G810A:p.K270K exonic Alox15 synonymous SNV uc007juo.1:c.G810A:p.K270K exonic ENSMUSG00000018924 synonymous SNV ENSMUST00000019068:c.G810A:p.K270K 11qB3 NA NA chr11 70163046 TACxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.519729 0.522161 0.995343 44 0 0 84.941753 1 0.02 -0.210512 0 24 0 735 0 60 0 0 CC 4.211485 14 0 399 0 KEEP - Alox15 YES UVC_2 chr11 70163047 70163047 T C exonic Alox15 nonsynonymous SNV NM_009660:c.A809G:p.K270R exonic Alox15 nonsynonymous SNV uc007juo.1:c.A809G:p.K270R exonic ENSMUSG00000018924 nonsynonymous SNV ENSMUST00000019068:c.A809G:p.K270R 11qB3 NA NA chr11 70163047 ACCxTGA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.520328 0.522161 0.99649 45 0 0 85.141937 1 0.02 -0.210513 0 24 0 737 0 60 0 0 TT 4.512228 15 0 425 0 KEEP - Alox15 NO UVC_2 chr11 7069664 7069664 T C exonic Adcy1 synonymous SNV NM_009622:c.T3303C:p.P1101P exonic Adcy1 synonymous SNV uc007hzf.1:c.T3303C:p.P1101P exonic ENSMUSG00000020431 synonymous SNV ENSMUST00000020706:c.T3303C:p.P1101P 11qA1 NA NA chr11 7069664 CCCxCCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.03676 0.036766 0.999859 27 0 0 21.460657 1 0.02 -0.052629 0 6 0 186 0 60 0 0 TT 5.414214 18 0 501 0 KEEP + Adcy1 NO UVC_2 chr11 7069666 7069666 C T exonic Adcy1 nonsynonymous SNV NM_009622:c.C3305T:p.P1102L exonic Adcy1 nonsynonymous SNV uc007hzf.1:c.C3305T:p.P1102L exonic ENSMUSG00000020431 nonsynonymous SNV ENSMUST00000020706:c.C3305T:p.P1102L 11qA1 NA NA chr11 7069666 CTCxAGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.03676 0.036766 0.999859 27 0 0 20.359398 1 0.02 -0.052621 0 6 0 175 0 60 0 0 CC 5.414721 18 0 513 0 KEEP + Adcy1 YES UVC_2 chr11 72949489 72949489 A C UTR3 Gsg2 NA NA UTR3 Gsg2 NA NA UTR3 ENSMUSG00000050107 NA NA 11qB4 NA NA chr11 72949489 CTAxGTT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 54 0 0 42.89293 1 0.02 -0.113995 0 13 0 367 0 60 0 0 AA 9.023665 30 0 838 0 KEEP + Gsg2 NO UVC_2 chr11 77282772 77282772 A G exonic Coro6 nonsynonymous SNV NM_139129:c.A1156G:p.S386G exonic Coro6 nonsynonymous SNV uc007kgt.1:c.A1156G:p.S386G exonic ENSMUSG00000020836 nonsynonymous SNV ENSMUST00000052515:c.A1156G:p.S386G 11qB5 NA NA chr11 77282772 GCCxGCG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 145 0 0 12.550988 0.193548 0.02 1.33746 25 6 756 163 60 60 0 0 AA 23.697649 79 0 2139 0 KEEP + Coro6 NO UVC_2 chr11 77822905 77822905 A G exonic Phf12 synonymous SNV NM_174852:c.A324G:p.K108K exonic Phf12 synonymous SNV uc007khr.2:c.A312G:p.K104K exonic ENSMUSG00000037791 synonymous SNV ENSMUST00000049167:c.A324G:p.K108K 11qB5 NA NA chr11 77822905 GAAxCGA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 115 1 0 16.536324 0.212121 0.02 -0.289411 26 7 762 206 60 60 0 0 AA 20.44634 68 0 1849 0 KEEP + Phf12 NO UVC_2 chr11 77993492 77993492 T G exonic Tlcd1 nonsynonymous SNV NM_026708:c.T404G:p.V135G exonic Tlcd1 nonsynonymous SNV uc007kij.1:c.T404G:p.V135G exonic ENSMUSG00000019437 nonsynonymous SNV ENSMUST00000092879:c.T404G:p.V135G 11qB5 NA NA chr11 77993492 TTGxTGG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 323 2 0 12.144673 0.049296 0.02 2.530184 135 7 3994 209 60 60 0 0 TT 42.983432 143 0 3911 0 KEEP + Tlcd1 NO UVC_2 chr11 79053853 79053853 T C exonic Wsb1 synonymous SNV NM_001042565:c.A492G:p.K164K exonic Wsb1 synonymous SNV uc007kkh.1:c.A492G:p.K164K exonic ENSMUSG00000017677 synonymous SNV ENSMUST00000017821:c.A1218G:p.K406K 11qB5 NA NA chr11 79053853 CAGxTTT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 418 0 0 111.301187 0.302817 0.02 2.637886 99 43 2912 1286 60 60 0 0 TT 60.613956 205 1 5594 9 KEEP - Wsb1 NO UVC_2 chr11 83898246 83898246 T C exonic Tada2a nonsynonymous SNV NM_172562:c.A1042G:p.S348G exonic Tada2a nonsynonymous SNV uc007kqf.1:c.A1042G:p.S348G exonic ENSMUSG00000018651 nonsynonymous SNV ENSMUST00000141852:c.A460G:p.S154G 11qC NA NA chr11 83898246 GACxCAG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 73 0 0 11.780797 0.238095 0.02 -0.184176 16 5 479 144 60 60 0 0 TT 11.67028 43 1 1156 11 KEEP - Tada2a NO UVC_2 chr11 84126371 84126371 T C exonic Acaca nonsynonymous SNV NM_133360:c.T4445C:p.M1482T exonic Acaca nonsynonymous SNV uc007kql.1:c.T4445C:p.M1482T exonic ENSMUSG00000020532 nonsynonymous SNV ENSMUST00000020843:c.T4445C:p.M1482T 11qC NA NA chr11 84126371 TCAxGGA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 127 0 0 21.04594 0.232558 0.02 -0.377081 33 10 974 264 60 60 0 0 TT 19.241206 64 0 1704 0 KEEP + Acaca NO UVC_2 chr11 84991888 84991888 A G exonic 1700125H20Rik nonsynonymous SNV NM_028589:c.A559G:p.M187V exonic 1700125H20Rik nonsynonymous SNV uc011ybo.1:c.A229G:p.M77V exonic ENSMUSG00000018479 nonsynonymous SNV ENSMUST00000100681:c.A229G:p.M77V 11qC NA NA chr11 84991888 AAGxTGC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 110 0 0 61.34872 0.418182 0.02 1.401445 32 23 894 666 60 60 0 0 AA 14.131779 47 0 1252 0 KEEP + 1700125H20Rik NO UVC_2 chr11 86114351 86114351 A G intronic Med13 NA NA intronic Med13 NA NA ncRNA_intronic ENSMUSG00000085208 NA NA 11qC NA NA chr11 86114351 CCTxCAA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760834 0.760887 0.999931 66 1 0 25.380565 0.30303 0.02 -0.289412 23 10 665 294 60 60 0 0 AA 7.50721 25 0 644 0 KEEP + Med13 NO UVC_2 chr11 88843240 88843240 C T exonic Coil nonsynonymous SNV NM_016706:c.C1112T:p.S371F exonic Coil nonsynonymous SNV uc007kwa.1:c.C1112T:p.S371F exonic ENSMUSG00000033983 nonsynonymous SNV ENSMUST00000036649:c.C1103T:p.S368F 11qC NA NA chr11 88843240 CTTxTGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 125 0 0 240.371796 0.946667 0.02 1.333282 4 71 123 2133 60 60 0 0 CC 11.419765 38 0 1079 0 KEEP + Coil YES UVC_2 chr11 93782794 93782794 A C exonic Mbtd1 nonsynonymous SNV NM_134012:c.A609C:p.L203F exonic Mbtd1 nonsynonymous SNV uc007kxo.2:c.A609C:p.L203F exonic ENSMUSG00000059474 nonsynonymous SNV ENSMUST00000107852:c.A609C:p.L203F 11qD NA NA chr11 93782794 ATTxGCA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353915 0.353947 0.999909 47 0 0 7.363974 0.210526 0.02 -0.166621 15 4 462 97 60 60 0 0 AA 7.219264 24 0 674 0 KEEP + Mbtd1 NO UVC_2 chr11 94427134 94427134 C T exonic Chad synonymous SNV NM_007689:c.C723T:p.F241F exonic Chad synonymous SNV uc007kzd.1:c.C723T:p.F241F exonic ENSMUSG00000039084 synonymous SNV ENSMUST00000040418:c.C723T:p.F241F 11qD NA NA chr11 94427134 CTTxGGT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 75 0 0 88.258378 0.962963 0.02 -0.236791 1 26 22 777 60 60 0 0 CC 12.294979 41 0 1024 0 KEEP + Chad YES UVC_2 chr11 94884576 94884576 T G exonic Samd14 nonsynonymous SNV NM_146025:c.T826G:p.S276A exonic Samd14 nonsynonymous SNV uc007kzt.1:c.T826G:p.S276A exonic ENSMUSG00000047181 nonsynonymous SNV ENSMUST00000055947:c.T826G:p.S276A 11qD NA NA chr11 94884576 GAAxCTA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 124 7 0 146.690047 1 0.02 -0.377101 0 43 0 1262 0 60 0 0 TT 19.222086 64 0 1729 0 KEEP + Samd14 NO UVC_2 chr11 96123092 96123092 C T ncRNA_intronic Gm53 NA NA exonic AK078566 synonymous SNV uc007lbm.1:c.C192T:p.L64L exonic ENSMUSG00000078706 unknown UNKNOWN 11qD NA NA chr11 96123092 CCTxGGT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 100 0 0 137.361349 0.97561 0.02 -0.368366 1 40 22 1203 60 60 0 0 CC 12.316123 41 0 1005 0 KEEP + Gm53 YES UVC_2 chr11 96615342 96615342 C T intronic Skap1 NA NA intronic Skap1 NA NA intronic ENSMUSG00000057058 NA NA 11qD NA NA chr11 96615342 TTTxAGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 86 0 0 97.046605 1 0.02 -0.245583 0 28 0 837 0 60 0 0 CC 12.033505 40 0 1153 0 KEEP + Skap1 YES UVC_2 chr11 98283510 98283510 C T intronic Erbb2 NA NA intronic Erbb2 NA NA intronic ENSMUSG00000062312 NA NA 11qD NA NA chr11 98283510 AGCxATG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 131 0 0 154.416545 0.923077 0.02 1.436428 4 48 122 1377 60 60 0 0 CC 18.048635 60 0 1702 0 KEEP + Erbb2 YES UVC_2 chr11 98315699 98315699 C T intronic Grb7 NA NA intronic Grb7 NA NA intronic ENSMUSG00000019312 NA NA 11qD NA NA chr11 98315699 TTTxCTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 101 0 0 176.630627 0.962963 0.02 1.50876 2 52 49 1555 60 60 0 1 CC 11.985032 40 0 1090 0 KEEP + Grb7 YES UVC_2 chr11 99006737 99006737 T G exonic Ccr7 nonsynonymous SNV NM_007719:c.A672C:p.Q224H exonic Ccr7 nonsynonymous SNV uc007lih.1:c.A672C:p.Q224H exonic ENSMUSG00000037944 nonsynonymous SNV ENSMUST00000103134:c.A672C:p.Q224H 11qD NA NA chr11 99006737 CACxTGG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 204 2 0 81.426901 0.492754 0.02 1.090294 35 34 1052 860 60 60 0 0 TT 30.058106 100 0 2765 0 KEEP - Ccr7 NO UVC_2 chr11 99735388 99735388 C T downstream Krtap9-1 NA NA downstream Krtap9-1 NA NA downstream ENSMUSG00000070335 NA NA 11qD NA NA chr11 99735388 TGCxTTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 186 0 0 36.561311 0.205479 0.02 1.252129 58 15 1689 455 60 60 0 0 CC 27.057079 90 0 2530 0 KEEP NA Krtap9-1 YES UVC_2 chr11 99735389 99735389 T C downstream Krtap9-1 NA NA downstream Krtap9-1 NA NA downstream ENSMUSG00000070335 NA NA 11qD NA NA chr11 99735389 GCCxTTT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 186 0 0 39.854444 0.213333 0.02 1.333292 59 16 1780 491 60 60 0 0 TT 26.770067 89 0 2487 0 KEEP NA Krtap9-1 NO UVC_2 chr12 104026584 104026584 T A exonic Btbd7 nonsynonymous SNV NM_172806:c.A2132T:p.K711M exonic Btbd7 nonsynonymous SNV uc007our.1:c.A2132T:p.K711M exonic ENSMUSG00000041702 nonsynonymous SNV ENSMUST00000045652:c.A2132T:p.K711M 12qE NA NA chr12 104026584 AACxTGT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522093 0.522161 0.999869 50 0 0 8.914291 0.166667 0.02 -0.210493 20 4 594 117 60 60 0 0 TT 6.316776 21 0 589 0 KEEP - Btbd7 NO UVC_2 chr12 104240179 104240179 G A exonic Unc79 nonsynonymous SNV NM_001081017:c.G612A:p.M204I exonic Unc79 nonsynonymous SNV uc007oux.2:c.G81A:p.M27I exonic ENSMUSG00000021198 nonsynonymous SNV ENSMUST00000085079:c.G81A:p.M27I 12qE NA NA chr12 104240179 AATxGCT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 122 1 0 86.536363 0.557692 0.02 1.535127 23 29 680 882 60 60 0 0 GG 17.735112 59 0 1649 0 KEEP + Unc79 YES UVC_2 chr12 105056153 105056153 G A intergenic "Serpina1d(dist=44310),Serpina1a(dist=35352)" NA NA intronic "Serpina1a,Serpina1b" NA NA ncRNA_exonic ENSMUSG00000090555 NA NA 12qE "Score=0.950074;Name=No.26211,chr12:105178920" NA chr12 105056153 GTCxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 116 2 13 169.322329 1 0.02 -0.438466 0 50 0 1455 0 60 0 0 GG 15.611393 52 0 1308 0 KEEP - Serpina1d YES UVC_2 chr12 105092989 105092989 T C exonic Serpina1a synonymous SNV NM_009243:c.A939G:p.G313G exonic Serpina1a synonymous SNV uc007owh.1:c.A939G:p.G313G exonic ENSMUSG00000066366 synonymous SNV ENSMUST00000085056:c.A939G:p.G313G 12qE "Score=0.956227;Name=No.26212,chr12:105126513" NA chr12 105092989 TTCxCCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 119 0 24 27.544194 0.234043 0.02 -0.412221 36 11 1082 334 60 29 0 0 TT 18.347878 61 0 1698 0 KEEP - Serpina1a NO UVC_2 chr12 106887307 106887307 A G exonic Atg2b synonymous SNV NM_029654:c.T3099C:p.R1033R exonic Atg2b synonymous SNV uc007oyp.1:c.T3099C:p.R1033R exonic ENSMUSG00000041341 synonymous SNV ENSMUST00000041055:c.T3099C:p.R1033R 12qE NA NA chr12 106887307 GGAxCGA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55282 0.552887 0.999879 48 0 0 14.28096 0.24 0.02 -0.219238 19 6 548 174 60 60 0 0 AA 6.612061 22 0 585 0 KEEP - Atg2b NO UVC_2 chr12 109346751 109346751 A C intronic Setd3 NA NA intronic Setd3 NA NA intronic ENSMUSG00000056770 NA NA 12qF1 NA NA chr12 109346751 CAAxGTA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 80 0 0 10.882248 0.178571 0.02 -0.24558 23 5 693 142 60 60 0 0 AA 13.535201 45 0 1250 0 KEEP - Setd3 NO UVC_2 chr12 109550338 109550338 C A exonic Hhipl1 nonsynonymous SNV NM_001044380:c.C714A:p.F238L exonic Hhipl1 nonsynonymous SNV uc007ozn.1:c.C714A:p.F238L exonic ENSMUSG00000021260 nonsynonymous SNV ENSMUST00000021685:c.C714A:p.F238L 12qF1 NA NA chr12 109550338 CTTxCTG C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 116 0 0 9.634908 0.087719 0.02 1.293581 52 5 1580 146 60 60 0 0 CC 13.873743 51 1 1407 13 KEEP + Hhipl1 NO UVC_2 chr12 111930408 111930408 T C exonic Hsp90aa1 nonsynonymous SNV NM_010480:c.A2008G:p.T670A exonic Hsp90aa1 nonsynonymous SNV uc007pbq.1:c.A1975G:p.T659A exonic ENSMUSG00000021270 nonsynonymous SNV ENSMUST00000021698:c.A2008G:p.T670A 12qF1 NA NA chr12 111930408 CAGxTTC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 121 0 27 39.768011 0.357143 0.02 -0.368367 27 15 801 445 60 60 0 0 TT 17.443016 58 0 1573 0 KEEP - Hsp90aa1 NO UVC_2 chr12 113071586 113071586 A C exonic Ppp1r13b nonsynonymous SNV NM_011625:c.T2336G:p.L779R exonic Ppp1r13b nonsynonymous SNV uc007pec.1:c.T1856G:p.L619R exonic ENSMUSG00000021285 nonsynonymous SNV ENSMUST00000084938:c.T1967G:p.L656R 12qF1 NA NA chr12 113071586 GGAxGTG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 147 0 0 40.758767 0.25641 0.02 1.208531 58 20 1753 505 60 60 0 0 AA 15.593283 52 0 1408 0 KEEP - Ppp1r13b NO UVC_2 chr12 114215516 114215516 T G exonic Btbd6 nonsynonymous SNV NM_201646:c.T521G:p.L174R exonic Btbd6 nonsynonymous SNV uc007pfo.1:c.T521G:p.L174R exonic ENSMUSG00000002803 nonsynonymous SNV ENSMUST00000002880:c.T521G:p.L174R 12qF1 NA NA chr12 114215516 ATCxTGC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.976858 0.976865 0.999992 104 0 0 48.267141 0.363636 0.02 1.410076 35 20 1057 544 60 60 0 0 TT 12.332019 41 0 1138 0 KEEP + Btbd6 NO UVC_2 chr12 114545085 114545085 T G intergenic "Tmem121(dist=117352),Adam6b(dist=182691)" NA NA ncRNA_exonic abParts NA NA exonic ENSMUSG00000076613 unknown UNKNOWN 12qF1 NA NA chr12 114545085 TTGxTGA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 149 3 0 31.977767 0.206349 0.02 1.330879 50 13 1458 397 60 60 0 0 TT 19.84997 66 0 1803 0 KEEP - Tmem121 NO UVC_2 chr12 117686193 117686193 T C exonic Ncapg2 nonsynonymous SNV NM_133762:c.T3124C:p.C1042R exonic Ncapg2 nonsynonymous SNV uc007pht.1:c.T3124C:p.C1042R exonic ENSMUSG00000042029 nonsynonymous SNV ENSMUST00000084828:c.T3124C:p.C1042R 12qF2 NA NA chr12 117686193 AGGxGTT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291969 0.292001 0.999892 46 0 0 19.507305 0.470588 0.02 -0.149062 9 8 269 208 60 60 0 0 TT 6.909605 23 0 609 0 KEEP + Ncapg2 NO UVC_2 chr12 119369518 119369518 C T exonic Dnah11 nonsynonymous SNV NM_010060:c.G2287A:p.E763K exonic Dnahc11 nonsynonymous SNV uc007pie.1:c.G2287A:p.E763K exonic ENSMUSG00000018581 nonsynonymous SNV ENSMUST00000084806:c.G2287A:p.E763K 12qF2 NA NA chr12 119369518 ATTxCAC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.970814 0.97082 0.999993 105 0 0 35.791944 0.264151 0.02 1.427313 39 14 1181 424 60 60 0 0 CC 12.630522 42 0 1175 0 KEEP - Dnah11 YES UVC_2 chr12 119427856 119427856 T C intronic Dnah11 NA NA intronic Dnahc11 NA NA intronic ENSMUSG00000018581 NA NA 12qF2 NA NA chr12 119427856 TCTxACC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999998 72 0 0 23.495096 0.310345 0.02 -0.254288 20 9 557 270 60 60 0 0 TT 10.224959 34 0 924 0 KEEP - Dnah11 NO UVC_2 chr12 17240578 17240578 A T intergenic "Kcnf1(dist=56884),Pdia6(dist=32823)" NA NA intergenic "Kcnf1(dist=56884),Pdia6(dist=32823)" NA NA intergenic "ENSMUSG00000051726(dist=56884),ENSMUSG00000020571(dist=32773)" NA NA 12qA1.1 NA NA chr12 17240578 AAAxGTA A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 273 0 31 124.800244 0.516854 0.02 1.013768 43 46 1280 1297 60 60 0 0 AA 38.798021 129 0 3578 0 KEEP NA Kcnf1 NO UVC_2 chr12 17240579 17240579 G A intergenic "Kcnf1(dist=56885),Pdia6(dist=32822)" NA NA intergenic "Kcnf1(dist=56885),Pdia6(dist=32822)" NA NA intergenic "ENSMUSG00000051726(dist=56885),ENSMUSG00000020571(dist=32772)" NA NA 12qA1.1 NA NA chr12 17240579 AAAxTAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 278 0 31 124.447433 0.516854 0.02 1.013216 43 46 1267 1293 60 60 0 0 GG 40.304686 134 0 3736 0 KEEP NA Kcnf1 YES UVC_2 chr12 25638996 25638996 G A intronic Mboat2 NA NA intronic Mboat2 NA NA intronic ENSMUSG00000020646 NA NA 12qA1.3 NA NA chr12 25638996 GTAxACT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668442 0.668523 0.999879 50 0 0 9.968423 0.222222 0.02 -0.254364 14 4 427 122 60 60 0 0 GG 6.612886 22 0 624 0 KEEP + Mboat2 YES UVC_2 chr12 29279765 29279765 T A exonic Colec11 synonymous SNV NM_027866:c.A576T:p.S192S exonic Colec11 synonymous SNV uc007nfr.1:c.A576T:p.S192S exonic ENSMUSG00000036655 synonymous SNV ENSMUST00000036136:c.A576T:p.S192S 12qA2 NA NA chr12 29279765 GTAxGAA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 167 2 0 36.35173 0.16 0.02 2.863527 84 16 2448 478 60 60 0 0 TT 16.824356 56 0 1482 0 KEEP - Colec11 NO UVC_2 chr12 31869848 31869848 A C ncRNA_exonic 6030469F06Rik NA NA intergenic "Fam110c(dist=105043),Lamb1-1(dist=80311)" NA NA exonic ENSMUSG00000073142 nonsynonymous SNV ENSMUST00000101508:c.A361C:p.S121R 12qA2 NA NA chr12 31869848 GCAxGTG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.83568 0.835716 0.999957 67 0 0 16.231025 0.216216 0.02 -0.324485 29 8 885 208 60 60 0 0 AA 7.82089 26 0 731 0 KEEP NA 6030469F06Rik NO UVC_2 chr12 31953896 31953896 G A intronic Lamb1 NA NA intronic "Lamb1,Lamb1-1" NA NA intronic ENSMUSG00000002900 NA NA 12qA2 NA NA chr12 31953896 ATGxACC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 100 0 0 21.930844 0.257143 0.02 -0.306922 26 9 772 263 60 60 0 0 GG 16.845992 56 0 1594 0 KEEP + Lamb1 YES UVC_2 chr12 32020332 32020332 A G exonic Dld nonsynonymous SNV NM_007861:c.T874C:p.S292P exonic Dld nonsynonymous SNV uc007nhg.2:c.T874C:p.S292P exonic ENSMUSG00000020664 nonsynonymous SNV ENSMUST00000002980:c.T874C:p.S292P 12qA3 NA NA chr12 32020332 ACGxCAC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 80 0 0 20.462221 0.266667 0.02 -0.26313 22 8 662 242 60 60 0 0 AA 12.331792 41 0 1134 0 KEEP - Dld NO UVC_2 chr12 32345674 32345674 A C exonic Cog5 nonsynonymous SNV NM_001163126:c.A187C:p.K63Q exonic Cog5 nonsynonymous SNV uc007nhs.1:c.A187C:p.K63Q exonic ENSMUSG00000035933 nonsynonymous SNV ENSMUST00000036862:c.A187C:p.K63Q 12qA3 NA NA chr12 32345674 GCAxAAC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 69 1 0 14.604303 0.25 0.02 -0.210379 18 6 523 176 60 60 0 0 AA 11.12852 37 0 1025 0 KEEP + Cog5 NO UVC_2 chr12 34049308 34049308 A G intronic Atxn7l1 NA NA exonic Atxn7l1 nonsynonymous SNV uc007nis.2:c.A250G:p.T84A exonic ENSMUSG00000020564 unknown UNKNOWN 12qA3 NA NA chr12 34049308 CTAxCCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 195 0 0 37.633294 0.179775 0.02 1.111625 73 16 2144 482 60 60 0 0 AA 24.308066 81 0 2181 0 KEEP + Atxn7l1 NO UVC_2 chr12 58644294 58644294 G A exonic Foxa1 synonymous SNV NM_008259:c.C126T:p.N42N exonic Foxa1 synonymous SNV uc007nps.1:c.C126T:p.N42N exonic ENSMUSG00000035451 synonymous SNV ENSMUST00000044380:c.C126T:p.N42N 12qC1 NA NA chr12 58644294 GGAxTTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.81669 0.818465 0.997832 61 0 0 13.721195 0.166667 0.02 -0.315743 30 6 889 179 60 60 0 0 GG 4.804328 16 0 425 0 KEEP - Foxa1 YES UVC_2 chr12 66250189 66250189 G T exonic Mis18bp1 nonsynonymous SNV NM_172578:c.C1787A:p.P596H exonic C79407 nonsynonymous SNV uc007nrg.1:c.C1787A:p.P596H exonic ENSMUSG00000047534 nonsynonymous SNV ENSMUST00000052201:c.C1787A:p.P596H 12qC1 NA NA chr12 66250189 CAAxGTA G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 118 0 0 104.839147 0.660377 0.02 1.517706 18 35 539 1029 60 60 0 0 GG 15.340263 51 0 1439 0 KEEP - Mis18bp1 NO UVC_2 chr12 71557175 71557175 G T intronic Tmx1 NA NA intronic Tmx1 NA NA intronic ENSMUSG00000021072 NA NA 12qC2 NA NA chr12 71557175 TTTxTTA G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291368 0.292001 0.997832 38 0 0 53.577634 0.941176 0.02 -0.149095 1 16 28 476 60 60 0 0 GG 4.811861 16 0 434 0 KEEP + Tmx1 NO UVC_2 chr12 72000427 72000427 C T exonic Frmd6 synonymous SNV NM_028127:c.C1641T:p.D547D exonic Frmd6 synonymous SNV uc007ntx.1:c.C1551T:p.D517D exonic ENSMUSG00000048285 synonymous SNV ENSMUST00000061386:c.C1551T:p.D517D 12qC3 "Score=0.97189;Name=No.6642,chr10:89593163" NA chr12 72000427 CGAxATC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 146 2 4 89.157883 0.673913 0.02 -0.403337 15 31 446 870 60 60 0 0 CC 23.763742 79 0 2238 0 KEEP + Frmd6 YES UVC_2 chr12 72212424 72212424 G A UTR5 Tomm20l NA NA UTR5 Tomm20l NA NA UTR5 ENSMUSG00000021078 NA NA 12qC3 NA NA chr12 72212424 AGGxCAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.489481 0.490544 0.997832 45 0 0 21.712267 0.533333 0.02 -0.201703 7 8 214 224 60 60 0 0 GG 4.812561 16 0 445 0 KEEP + Tomm20l YES UVC_2 chr12 73046154 73046154 A G intronic Daam1 NA NA intronic Daam1 NA NA intronic ENSMUSG00000034574 NA NA 12qC3 NA NA chr12 73046154 TCTxCTT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 66 0 0 18.163647 0.269231 0.02 -0.228029 19 7 549 214 60 60 0 0 AA 9.620497 32 0 847 0 KEEP + Daam1 NO UVC_2 chr12 73260902 73260902 C T exonic Ccdc175 nonsynonymous SNV NM_028687:c.G556A:p.E186K exonic 4930403N07Rik nonsynonymous SNV uc007nvh.2:c.G556A:p.E186K exonic ENSMUSG00000021086 nonsynonymous SNV ENSMUST00000021494:c.G556A:p.E186K 12qC3 NA NA chr12 73260902 CTTxCAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.641343 0.641347 0.999993 79 0 0 26.745507 0.357143 0.02 -0.245581 18 10 542 299 60 60 0 0 CC 12.61746 42 0 1159 0 KEEP - Ccdc175 YES UVC_2 chr12 73260903 73260903 C T exonic Ccdc175 synonymous SNV NM_028687:c.G555A:p.L185L exonic 4930403N07Rik synonymous SNV uc007nvh.2:c.G555A:p.L185L exonic ENSMUSG00000021086 synonymous SNV ENSMUST00000021494:c.G555A:p.L185L 12qC3 NA NA chr12 73260903 TTCxAAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 77 0 0 26.241257 0.37037 0.02 -0.236808 17 10 512 292 60 60 0 0 CC 12.633408 42 0 1189 0 KEEP - Ccdc175 YES UVC_2 chr12 73578297 73578297 G A exonic Lrrc9 synonymous SNV NM_001142728:c.G2289A:p.K763K exonic Lrrc9 synonymous SNV uc007nvm.2:c.G2292A:p.K764K exonic ENSMUSG00000021090 synonymous SNV ENSMUST00000066073:c.G2178A:p.K726K 12qC3 NA NA chr12 73578297 GAAxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 0.999998 55 0 0 23.414859 0.533333 0.02 -0.131563 7 8 210 241 60 60 0 0 GG 9.922607 33 0 928 0 KEEP + Lrrc9 YES UVC_2 chr12 77390875 77390875 A G intronic Mthfd1 NA NA intronic Mthfd1 NA NA intronic ENSMUSG00000021048 NA NA 12qC3 NA NA chr12 77390875 TTCxCAG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 82 0 0 22.598597 0.272727 0.02 -0.289364 24 9 679 267 60 60 0 0 AA 10.525056 35 0 942 0 KEEP + Mthfd1 NO UVC_2 chr12 8020742 8020742 A C exonic Apob nonsynonymous SNV NM_009693:c.A11801C:p.D3934A exonic Apob nonsynonymous SNV uc007mzf.2:c.A11801C:p.D3934A exonic ENSMUSG00000020609 nonsynonymous SNV ENSMUST00000171239:c.A962C:p.D321A 12qA1.1 NA NA chr12 8020742 GGGxCTG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490477 0.490544 0.999863 45 0 0 14.734606 0.26087 0.02 -0.201473 17 6 488 176 60 60 0 0 AA 6.014939 20 0 545 0 KEEP + Apob NO UVC_2 chr12 82521738 82521738 G A exonic Adam4 synonymous SNV NM_009620:c.C1095T:p.G365G exonic Adam4 synonymous SNV uc007ocd.1:c.C1095T:p.G365G exonic ENSMUSG00000072972 synonymous SNV ENSMUST00000085319:c.C1095T:p.G365G 12qD1 "Score=0.921395;Name=No.25994,chr12:82476104" NA chr12 82521738 ACAxCCT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 126 0 0 135.569589 0.733333 0.02 1.365945 16 44 476 1297 60 60 0 0 GG 15.641107 52 0 1452 0 KEEP - Adam4 YES UVC_2 chr12 85001295 85001295 A G exonic Rbm25 nonsynonymous SNV NM_027349:c.A764G:p.Y255C exonic Rbm25 nonsynonymous SNV uc011yoq.1:c.A152G:p.Y51C exonic ENSMUSG00000010608 nonsynonymous SNV ENSMUST00000048155:c.A764G:p.Y255C 12qD1 NA NA chr12 85001295 CTTxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 128 2 0 27.661565 0.261905 0.02 -0.368329 31 11 892 329 60 60 0 0 AA 18.633597 62 0 1623 0 KEEP + Rbm25 NO UVC_2 chr12 85009226 85009226 A G exonic Rbm25 nonsynonymous SNV NM_027349:c.A1330G:p.K444E exonic Rbm25 nonsynonymous SNV uc011yoq.1:c.A718G:p.K240E exonic ENSMUSG00000010608 nonsynonymous SNV ENSMUST00000048155:c.A1330G:p.K444E 12qD1 NA NA chr12 85009226 CGAxAAC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 96 0 0 24.631529 0.333333 0.02 -0.236783 18 9 527 278 60 60 0 0 AA 16.242652 54 0 1505 0 KEEP + Rbm25 NO UVC_2 chr12 85331440 85331440 C T intronic Acot2 NA NA intronic Acot2 NA NA intronic ENSMUSG00000021226 NA NA 12qD1 NA NA chr12 85331440 TCCxCAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 132 0 0 64.08047 0.347826 0.02 1.386275 45 24 1333 720 60 60 0 0 CC 14.736741 49 0 1360 0 KEEP + Acot2 YES UVC_2 chr12 85331441 85331441 C T intronic Acot2 NA NA intronic Acot2 NA NA intronic ENSMUSG00000021226 NA NA 12qD1 NA NA chr12 85331441 CCCxAGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 132 0 0 63.989912 0.347826 0.02 1.287004 45 24 1340 719 60 60 0 0 CC 15.040489 50 0 1415 0 KEEP + Acot2 YES UVC_2 chr12 85713235 85713235 T C exonic Coq6 synonymous SNV NM_172582:c.T1062C:p.F354F exonic Coq6 synonymous SNV uc007ofc.2:c.T189C:p.F63F exonic ENSMUSG00000021235 synonymous SNV ENSMUST00000021661:c.T1062C:p.F354F 12qD1 NA NA chr12 85713235 CTTxCCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 196 0 0 63.027331 0.285714 0.02 1.155407 60 24 1813 734 60 60 0 0 TT 29.724788 99 0 2686 0 KEEP + Coq6 NO UVC_2 chr12 85780531 85780531 G A exonic Aldh6a1 nonsynonymous SNV NM_134042:c.C562T:p.P188S exonic Aldh6a1 nonsynonymous SNV uc007ofk.1:c.C562T:p.P188S exonic ENSMUSG00000021238 nonsynonymous SNV ENSMUST00000085192:c.C562T:p.P188S 12qD1 NA NA chr12 85780531 CAGxAAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 33 0 0 29.666976 0.588235 0.02 -0.149109 7 10 216 299 60 60 0 0 GG 4.211174 14 0 395 0 KEEP - Aldh6a1 YES UVC_2 chr12 85944415 85944415 A G intronic Abcd4 NA NA intronic Abcd4 NA NA intronic ENSMUSG00000021240 NA NA 12qD1 NA NA chr12 85944415 GTCxCTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457707 0.457757 0.999892 48 0 0 13.767207 0.272727 0.02 -0.192792 16 6 440 165 60 60 0 0 AA 6.905828 23 0 578 0 KEEP - Abcd4 NO UVC_2 chr12 86487816 86487816 C T exonic Rps6kl1 synonymous SNV NM_146244:c.G480A:p.K160K exonic Rps6kl1 synonymous SNV uc007ogn.2:c.G480A:p.K160K exonic ENSMUSG00000019235 synonymous SNV ENSMUST00000085176:c.G450A:p.K150K 12qD2 NA NA chr12 86487816 CTTxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 63 1 0 17.702297 0.304348 0.02 -0.201702 16 7 478 205 60 60 0 0 CC 9.325933 31 0 894 0 KEEP - Rps6kl1 YES UVC_2 chr12 86630938 86630938 C G exonic Zc2hc1c nonsynonymous SNV NM_172414:c.C418G:p.P140A exonic Fam164c nonsynonymous SNV uc007ogw.2:c.C418G:p.P140A exonic ENSMUSG00000045064 nonsynonymous SNV ENSMUST00000059341:c.C418G:p.P140A 12qD2 NA NA chr12 86630938 TACxCAC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 79 0 0 107.394282 1 0.02 -0.322322 0 36 0 904 0 60 0 0 CC 11.427063 38 0 1059 0 KEEP + Zc2hc1c NO UVC_2 chr12 88043313 88043313 G C exonic Angel1 nonsynonymous SNV NM_144524:c.C1922G:p.A641G exonic Angel1 nonsynonymous SNV uc011ypj.1:c.C1922G:p.A641G exonic ENSMUSG00000021257 nonsynonymous SNV ENSMUST00000021682:c.C1922G:p.A641G 12qD2 NA NA chr12 88043313 TTGxCAG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 32 0 0 7.173007 0.214286 0.02 -0.122793 11 3 331 89 60 60 0 0 GG 4.512121 15 0 423 0 KEEP - Angel1 NO UVC_2 chr12 88103523 88103523 C T exonic Gm6772 synonymous SNV NM_001195767:c.C1326T:p.I442I exonic Gm6772 synonymous SNV uc011ypk.1:c.C1326T:p.I442I exonic ENSMUSG00000059114 synonymous SNV ENSMUST00000095527:c.C1293T:p.I431I 12qD2 NA NA chr12 88103523 TATxCTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457701 0.457757 0.999879 52 0 0 28.187186 0.454545 0.02 -0.192953 12 10 361 300 60 60 0 0 CC 6.617932 22 0 624 0 KEEP + Gm6772 YES UVC_2 chr12 88791503 88791503 G A exonic Snw1 nonsynonymous SNV NM_025507:c.C1576T:p.H526Y exonic Snw1 nonsynonymous SNV uc007ojf.1:c.C1576T:p.H526Y exonic ENSMUSG00000021039 nonsynonymous SNV ENSMUST00000021428:c.C1576T:p.H526Y 12qD2 NA NA chr12 88791503 CATxTTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 162 0 0 47.833344 0.327586 0.02 1.284826 39 19 1187 547 60 60 0 0 GG 24.650917 82 0 2310 0 KEEP - Snw1 YES UVC_2 chr12 88858443 88858443 C T UTR3 Gm8300 NA NA UTR3 Gm8300 NA NA UTR3 ENSMUSG00000079034 NA NA 12qD2 "Score=0.964934;Name=No.26049,chr12:89137957" NA chr12 88858443 ATCxTAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 371 7 7 55.281383 0.173913 0.02 2.62042 114 24 3443 715 60 60 0 0 CC 61.353502 204 0 5747 0 KEEP + Gm8300 YES UVC_2 chr12 89114698 89114698 G A intronic Gm2016 NA NA intronic Gm2016 NA NA intronic "ENSMUSG00000071217,ENSMUSG00000079029,ENSMUSG00000091835" NA NA 12qD2 "Score=0.974387;Name=No.26102,chr12:89486986" NA chr12 89114698 ATAxATT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457701 0.457757 0.999879 75 0 30 12.366468 0.227273 0.02 -0.192915 17 5 499 151 36 36 0 0 GG 11.732512 39 0 1121 0 KEEP + Gm2016 YES UVC_2 chr12 89559631 89559631 C T ncRNA_exonic Gm5039 NA NA exonic Eif1ax nonsynonymous SNV uc007ojt.1:c.G295A:p.E99K intronic ENSMUSG00000072905 NA NA 12qD3 "Score=0.946597;Name=No.26160,chr12:89251683" NA chr12 89559631 CTTxATC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 306 0 49 70.263161 0.282828 0.02 2.82887 71 28 2162 825 36 36 0 0 CC 49.014431 163 0 4611 0 KEEP - Gm5039 YES UVC_2 chr13 101086392 101086392 C T exonic "Naip6,Naip7" nonsynonymous SNV NM_010871:c.G115A:p.E39K exonic "Naip6,Naip7" nonsynonymous SNV uc007rqn.1:c.G115A:p.E39K exonic ENSMUSG00000078942 nonsynonymous SNV ENSMUST00000042220:c.G115A:p.E39K 13qD1 "Score=0.971217;Name=No.34881,chr13:100982499" NA chr13 101086392 CTTxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 703 3 12 96.974065 0.17284 0.02 5.474998 201 42 6066 1255 60 60 0 0 CC 108.877853 362 0 10391 0 KEEP - Naip6 YES UVC_2 chr13 101425129 101425129 T C exonic Taf9 nonsynonymous SNV NM_001015889:c.T124C:p.F42L exonic Taf9 nonsynonymous SNV uc007rri.1:c.T124C:p.F42L exonic ENSMUSG00000052293 nonsynonymous SNV ENSMUST00000084721:c.T124C:p.F42L 13qD1 "Score=0.970385;Name=No.38790,chr6:115588070" NA chr13 101425129 GAGxTTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 123 0 6 51.753609 0.387755 0.02 -0.438519 30 19 890 569 60 60 0 0 TT 20.44879 68 0 1862 0 KEEP + Taf9 NO UVC_2 chr13 105911486 105911486 C T exonic 4933425L06Rik synonymous SNV NM_025751:c.C1743T:p.T581T exonic 4933425L06Rik synonymous SNV uc007rtq.1:c.C1743T:p.T581T exonic ENSMUSG00000021718 synonymous SNV ENSMUST00000022232:c.C1743T:p.T581T 13qD1 NA NA chr13 105911486 GACxTCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 157 3 0 29.705509 0.222222 0.02 1.418554 42 12 1261 364 60 60 0 0 CC 23.143978 77 0 2162 0 KEEP + 4933425L06Rik YES UVC_2 chr13 113278823 113278823 C T exonic Il6st nonsynonymous SNV NM_010560:c.C764T:p.S255F exonic Il6st nonsynonymous SNV uc007rwg.2:c.C764T:p.S255F exonic ENSMUSG00000021756 nonsynonymous SNV ENSMUST00000070731:c.C764T:p.S255F 13qD2.2 NA NA chr13 113278823 AGTxTGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 62 0 0 34.406893 0.48 0.02 -0.219274 13 12 392 362 60 60 0 0 CC 9.325862 31 0 891 0 KEEP + Il6st YES UVC_2 chr13 117700169 117700169 T C intronic Parp8 NA NA intronic Parp8 NA NA intronic ENSMUSG00000021725 NA NA 13qD2.3 NA NA chr13 117700169 TCAxATT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 55 0 0 27.958512 0.47619 0.02 -0.18418 11 10 322 295 60 60 0 0 TT 8.7185 29 0 769 0 KEEP - Parp8 NO UVC_2 chr13 11894129 11894129 T A exonic Ryr2 nonsynonymous SNV NM_023868:c.A1772T:p.E591V exonic Ryr2 nonsynonymous SNV uc007plf.1:c.A1751T:p.E584V exonic ENSMUSG00000021313 nonsynonymous SNV ENSMUST00000170156:c.A1751T:p.E584V 13qA1 NA NA chr13 11894129 CCTxCTT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162114 0.162467 0.997832 30 0 0 13.023281 0.384615 0.02 -0.114018 8 5 241 144 60 60 0 0 TT 4.812503 16 0 444 0 KEEP - Ryr2 NO UVC_2 chr13 12331857 12331857 A G intronic Mtr NA NA intronic Mtr NA NA intronic ENSMUSG00000021311 NA NA 13qA1 NA NA chr13 12331857 ACTxATT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423476 0.423478 0.999997 57 0 0 12.880713 0.238095 0.02 -0.184187 16 5 472 155 60 60 0 0 AA 8.995004 30 0 781 0 KEEP - Mtr NO UVC_2 chr13 13556038 13556038 A G exonic Nid1 nonsynonymous SNV NM_010917:c.A275G:p.Y92C exonic Nid1 nonsynonymous SNV uc007pmf.2:c.A275G:p.Y92C exonic ENSMUSG00000005397 nonsynonymous SNV ENSMUST00000005532:c.A275G:p.Y92C 13qA1 NA NA chr13 13556038 AATxCCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 117 0 0 48.271511 0.395833 0.02 -0.420725 29 19 800 532 60 60 0 0 AA 15.629483 52 0 1358 0 KEEP + Nid1 NO UVC_2 chr13 13726891 13726891 T C exonic Lyst nonsynonymous SNV NM_010748:c.T878C:p.L293P exonic Lyst nonsynonymous SNV uc007pmh.1:c.T878C:p.L293P exonic ENSMUSG00000019726 nonsynonymous SNV ENSMUST00000050664:c.T878C:p.L293P 13qA1 NA NA chr13 13726891 TCCxAGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999997 71 0 0 35.400684 0.342105 0.02 -0.333301 25 13 752 398 60 60 0 0 TT 8.421659 28 0 773 0 KEEP + Lyst NO UVC_2 chr13 13740826 13740826 T C exonic Lyst nonsynonymous SNV NM_010748:c.T4115C:p.I1372T exonic Lyst nonsynonymous SNV uc007pmi.1:c.T4115C:p.I1372T exonic ENSMUSG00000019726 nonsynonymous SNV ENSMUST00000050664:c.T4115C:p.I1372T 13qA1 NA NA chr13 13740826 GTAxTCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 97 2 0 28.225857 0.305556 0.02 -0.315738 25 11 736 326 60 60 0 0 TT 13.53395 45 0 1228 0 KEEP + Lyst NO UVC_2 chr13 19213108 19213108 T A intronic Amph NA NA intronic Amph NA NA intronic ENSMUSG00000021314 NA NA 13qA2 NA NA chr13 19213108 GGAxTTT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 72 0 0 20.543118 0.285714 0.02 -0.245552 20 8 565 240 60 60 0 0 TT 11.427613 38 0 1021 0 KEEP + Amph NO UVC_2 chr13 22256550 22256550 G C intergenic "Vmn1r189(dist=62016),Vmn1r191(dist=14005)" NA NA intergenic "Vmn1r189(dist=62016),Vmn1r191(dist=14005)" NA NA ncRNA_exonic ENSMUSG00000083319 NA NA 13qA3.1 "Score=0.955531;Name=No.13335,chr11:17845728" NA chr13 22256550 CTTxTGT G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 193 0 0 71.857347 0.282828 0.02 1.123076 71 28 2054 841 60 60 0 0 GG 22.857213 76 0 2093 0 KEEP NA Vmn1r189 NO UVC_2 chr13 22420370 22420370 C T exonic Vmn1r197 synonymous SNV NM_134244:c.C591T:p.A197A exonic Vmn1r197 synonymous SNV uc007psm.1:c.C591T:p.A197A exonic ENSMUSG00000069294 synonymous SNV ENSMUST00000091734:c.C591T:p.A197A 13qA3.1 NA NA chr13 22420370 GGCxAGT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 480 2 0 12.265644 0.049645 0.02 2.54765 134 7 4053 210 60 60 0 0 CC 78.429427 264 1 7379 8 KEEP + Vmn1r197 YES UVC_2 chr13 23713727 23713727 T C exonic Hist1h1e nonsynonymous SNV NM_015787:c.A640G:p.T214A exonic Hist1h1e nonsynonymous SNV uc007puj.2:c.A640G:p.T214A exonic ENSMUSG00000051627 nonsynonymous SNV ENSMUST00000062045:c.A640G:p.T214A 13qA3.1 NA NA chr13 23713727 CGGxTTT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52183 0.522161 0.999366 46 0 0 40.496129 0.583333 0.02 -0.210475 10 14 291 409 60 60 0 0 TT 5.111518 17 0 447 0 KEEP - Hist1h1e NO UVC_2 chr13 23836961 23836961 C G exonic Hist1h3c nonsynonymous SNV NM_175653:c.G406C:p.A136P exonic Hist1h3c nonsynonymous SNV uc007pur.1:c.G406C:p.A136P exonic ENSMUSG00000069310 nonsynonymous SNV ENSMUST00000091752:c.G406C:p.A136P 13qA3.1 NA NA chr13 23836961 ATGxCCT C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 75 0 0 10.882075 0.238095 0.02 -0.219099 16 5 480 135 60 60 0 0 CC 12.318097 41 0 1100 0 KEEP - Hist1h3c NO UVC_2 chr13 24788381 24788381 T G exonic Fam65b synonymous SNV NM_001080381:c.T1194G:p.T398T exonic Fam65b synonymous SNV uc007pwd.1:c.T1194G:p.T398T exonic ENSMUSG00000036006 synonymous SNV ENSMUST00000038477:c.T1194G:p.T398T 13qA3.1 NA NA chr13 24788381 CACxTTC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 295 0 0 210.679678 0.609375 0.02 2.662333 50 78 1501 2107 60 60 0 0 TT 39.681736 132 0 3638 0 KEEP + Fam65b NO UVC_2 chr13 27529111 27529111 A G intronic Prl8a6 NA NA intronic Prl8a6 NA NA intronic ENSMUSG00000021345 NA NA 13qA3.1 NA NA chr13 27529111 AAGxTGG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 74 4 0 33.391828 0.40625 0.02 -0.280331 19 13 558 366 60 60 0 0 AA 10.213115 34 0 905 0 KEEP - Prl8a6 NO UVC_2 chr13 34838972 34838972 G C exonic Fam50b nonsynonymous SNV NM_138746:c.G561C:p.E187D exonic Fam50b nonsynonymous SNV uc007qbl.1:c.G561C:p.E187D exonic ENSMUSG00000038246 nonsynonymous SNV ENSMUST00000039605:c.G561C:p.E187D 13qA3.3 NA NA chr13 34838972 CGAxAAG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.384723 0.387407 0.993072 32 0 0 27.349305 0.5 0.02 -0.175353 10 10 289 286 60 60 0 0 GG 3.308932 11 0 311 0 KEEP + Fam50b NO UVC_2 chr13 37139308 37139308 C T exonic F13a1 synonymous SNV NM_001166391:c.G48A:p.P16P exonic F13a1 synonymous SNV uc007qcn.2:c.G48A:p.P16P exonic ENSMUSG00000039109 synonymous SNV ENSMUST00000037491:c.G48A:p.P16P 13qA3.3 NA NA chr13 37139308 GGGxGGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 120 0 0 51.417025 0.304348 0.02 1.287606 48 21 1246 598 60 60 0 0 CC 12.618347 42 0 1039 0 KEEP - F13a1 YES UVC_2 chr13 3912113 3912113 C T splicing Net1(NM_019671:exon3:c.195+1G>A) NA NA splicing Net1(uc007pje.1:exon3:c.195+1G>A) NA NA splicing ENSMUSG00000021215(ENSMUST00000091853:exon3:c.195+1G>A) NA NA 13qA1 NA NA chr13 3912113 TCAxCAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387407 0.387407 1 92 1 0 59.679084 0.947368 0.02 -0.175404 1 18 31 528 60 60 0 0 CC 16.54236 55 0 1523 0 KEEP - Net1 YES UVC_2 chr13 3912114 3912114 C T exonic Net1 synonymous SNV NM_019671:c.G195A:p.L65L exonic Net1 synonymous SNV uc007pje.1:c.G195A:p.L65L exonic ENSMUSG00000021215 synonymous SNV ENSMUST00000091853:c.G195A:p.L65L 13qA1 NA NA chr13 3912114 CACxAAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 91 1 0 56.927827 0.944444 0.02 -0.166644 1 17 31 505 60 60 0 0 CC 16.536206 55 0 1563 0 KEEP - Net1 YES UVC_2 chr13 46910588 46910588 C G exonic Kif13a synonymous SNV NM_010617:c.G1146C:p.S382S exonic Kif13a synonymous SNV uc007qhn.1:c.G1146C:p.S382S exonic ENSMUSG00000021375 synonymous SNV ENSMUST00000056978:c.G1146C:p.S382S 13qA5 NA NA chr13 46910588 CTGxGAG C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 88 0 0 27.026126 0.305556 0.02 -0.315592 25 11 693 314 60 60 0 0 CC 12.308757 41 0 1084 0 KEEP - Kif13a NO UVC_2 chr13 49381057 49381057 T C intronic Fgd3 NA NA intronic Fgd3 NA NA intronic ENSMUSG00000037946 NA NA 13qA5 NA NA chr13 49381057 CCAxACT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522114 0.522161 0.999909 56 0 0 9.217398 0.166667 0.02 -0.210158 20 4 529 120 60 60 0 0 TT 7.156237 24 0 562 0 KEEP - Fgd3 NO UVC_2 chr13 55262471 55262471 G A intronic Fgfr4 NA NA intronic Fgfr4 NA NA intronic ENSMUSG00000005320 NA NA 13qB1 NA NA chr13 55262471 AACxAGC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119761 0.120436 0.994391 28 0 0 24.917618 0.727273 0.02 -0.096465 3 8 80 239 60 60 0 0 GG 3.893304 13 0 306 0 KEEP + Fgfr4 YES UVC_2 chr13 58960602 58960602 G C exonic Ntrk2 nonsynonymous SNV NM_001025074:c.G656C:p.S219T exonic Ntrk2 nonsynonymous SNV uc007quk.1:c.G656C:p.S219T exonic ENSMUSG00000055254 nonsynonymous SNV ENSMUST00000109839:c.G440C:p.S147T 13qB1 NA NA chr13 58960602 GCAxTGT G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 89 0 0 28.625812 0.305556 0.02 -0.315744 25 11 739 330 60 60 0 0 GG 12.331517 41 0 1135 0 KEEP + Ntrk2 NO UVC_2 chr13 64000685 64000685 T C exonic Ercc6l2 synonymous SNV NM_001013608:c.T4488C:p.S1496S exonic 0610007P08Rik synonymous SNV uc007qye.2:c.T4488C:p.S1496S exonic ENSMUSG00000021470 synonymous SNV ENSMUST00000039944:c.T4488C:p.S1496S 13qB3 NA NA chr13 64000685 CAGxACC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 44 0 0 33.40635 0.48 0.02 -0.219249 13 12 376 352 60 60 0 0 TT 5.111324 17 0 449 0 KEEP + Ercc6l2 NO UVC_2 chr13 65136871 65136871 C A exonic Spata31d1c synonymous SNV NM_001083890:c.C918A:p.P306P exonic 4932441B19Rik synonymous SNV uc007qzb.1:c.C918A:p.P306P exonic ENSMUSG00000074849 synonymous SNV ENSMUST00000099427:c.C918A:p.P306P 13qB3 NA NA chr13 65136871 CCCxTAT C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 294 2 0 81.970996 0.3 0.02 2.820298 77 33 2311 954 60 60 0 0 CC 42.711644 142 0 4036 0 KEEP + Spata31d1c NO UVC_2 chr13 70743058 70743058 A G exonic BC018507 synonymous SNV NM_144837:c.T3786C:p.H1262H exonic BC018507 synonymous SNV uc007rcx.2:c.T2634C:p.H878H exonic ENSMUSG00000034525 synonymous SNV ENSMUST00000043493:c.T3786C:p.H1262H 13qC1 NA NA chr13 70743058 GTGxTGC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 82 0 0 19.147869 0.228571 0.02 -0.315744 27 8 807 235 60 60 0 0 AA 11.127798 37 0 1011 0 KEEP - BC018507 NO UVC_2 chr13 74297736 74297736 T G exonic Slc9a3 nonsynonymous SNV NM_001081060:c.T1409G:p.L470R exonic Slc9a3 nonsynonymous SNV uc007res.1:c.T1409G:p.L470R exonic ENSMUSG00000036123 nonsynonymous SNV ENSMUST00000036208:c.T1409G:p.L470R 13qC1 NA NA chr13 74297736 AGCxCAA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877707 0.877708 0.999999 81 0 0 8.558693 0.105263 0.02 -0.350842 34 4 1024 122 60 60 0 0 TT 10.527471 35 0 974 0 KEEP + Slc9a3 NO UVC_2 chr13 74299221 74299221 C T exonic Slc9a3 synonymous SNV NM_001081060:c.C1579T:p.L527L exonic Slc9a3 synonymous SNV uc007res.1:c.C1579T:p.L527L exonic ENSMUSG00000036123 synonymous SNV ENSMUST00000036208:c.C1579T:p.L527L 13qC1 NA NA chr13 74299221 ATCxTGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522105 0.522161 0.999892 53 0 0 53.715837 0.708333 0.02 -0.21051 7 17 213 519 60 60 0 0 CC 6.918747 23 0 653 0 KEEP + Slc9a3 YES UVC_2 chr13 74498246 74498246 T G exonic Lrrc14b nonsynonymous SNV NM_001033042:c.A1489C:p.T497P exonic Lrrc14b nonsynonymous SNV uc007rfe.1:c.A1489C:p.T497P exonic ENSMUSG00000021579 nonsynonymous SNV ENSMUST00000022064:c.A1489C:p.T497P 13qC1 NA NA chr13 74498246 CAGxTTT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 103 0 0 23.918991 0.192308 0.02 1.436115 42 10 1232 302 60 60 0 0 TT 13.83315 46 0 1247 0 KEEP - Lrrc14b NO UVC_2 chr14 105523887 105523887 C G exonic Rbm26 synonymous SNV NM_134077:c.G2574C:p.G858G exonic Rbm26 synonymous SNV uc007uxj.1:c.G354C:p.G118G exonic ENSMUSG00000022119 synonymous SNV ENSMUST00000172122:c.G324C:p.G108G 14qE2.3 NA NA chr14 105523887 ATGxCCA C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 56 2 0 29.150521 0.5 0.02 -0.175398 10 10 288 304 60 60 0 0 CC 8.70639 29 0 779 0 KEEP - Rbm26 NO UVC_2 chr14 119067606 119067606 T C exonic Abcc4 nonsynonymous SNV NM_001033336:c.A269G:p.K90R exonic Abcc4 nonsynonymous SNV uc007uyv.2:c.A269G:p.K90R exonic ENSMUSG00000032849 nonsynonymous SNV ENSMUST00000036554:c.A269G:p.K90R 14qE4 NA NA chr14 119067606 GACxTCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16171 0.162467 0.995343 32 0 0 23.753251 0.615385 0.02 -0.11402 5 8 151 237 60 60 0 0 TT 4.211487 14 0 398 0 KEEP - Abcc4 NO UVC_2 chr14 122372759 122372759 C T intronic Ubac2 NA NA intronic Ubac2 NA NA intronic ENSMUSG00000041765 NA NA 14qE5 NA NA chr14 122372759 TGGxGTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 64 0 0 25.541761 0.37037 0.02 -0.236758 17 10 481 285 60 60 0 0 CC 9.621954 32 0 853 0 KEEP + Ubac2 YES UVC_2 chr14 15673124 15673124 A C intronic Nek10 NA NA intronic Nek10 NA NA intronic ENSMUSG00000042567 NA NA 14qA2 NA NA chr14 15673124 AAGxTTG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.71725 0.717315 0.999909 60 0 0 11.740479 0.16129 0.02 -0.271818 26 5 739 153 60 60 0 0 AA 7.198087 24 0 637 0 KEEP + Nek10 NO UVC_2 chr14 25021515 25021515 C G intronic Dlg5 NA NA intronic Dlg5 NA NA intronic ENSMUSG00000021782 NA NA 14qA3 NA NA chr14 25021515 GCAxTCA C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 65 0 0 53.519639 0.62069 0.02 -0.254258 11 18 317 533 60 60 0 0 CC 8.120797 27 0 745 0 KEEP - Dlg5 NO UVC_2 chr14 31829435 31829435 T C ncRNA_exonic Snord19 NA NA ncRNA_exonic Snord19 NA NA ncRNA_exonic ENSMUSG00000077797 NA NA 14qB NA NA chr14 31829435 TGGxAAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 110 2 0 41.395756 0.307692 0.02 1.535052 36 16 1042 477 60 60 0 0 TT 13.831401 46 0 1230 0 KEEP - Snord19 NO UVC_2 chr14 32054074 32054074 A G exonic Phf7 synonymous SNV NM_027949:c.T384C:p.G128G exonic Phf7 synonymous SNV uc007sxf.1:c.T384C:p.G128G exonic ENSMUSG00000021902 synonymous SNV ENSMUST00000022459:c.T384C:p.G128G 14qB NA NA chr14 32054074 GCAxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 77 0 0 19.348269 0.228571 0.02 -0.306947 27 8 781 237 60 60 0 0 AA 9.624524 32 0 879 0 KEEP - Phf7 NO UVC_2 chr14 32360579 32360579 T C intronic Colq NA NA intronic Colq NA NA intronic ENSMUSG00000057606 NA NA 14qB NA NA chr14 32360579 CCAxCTT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.908987 0.909069 0.999909 75 2 0 17.53986 0.190476 0.02 -0.377104 34 8 997 226 60 60 0 0 TT 7.217952 24 0 653 0 KEEP - Colq NO UVC_2 chr14 33648784 33648784 T A exonic Fam170b nonsynonymous SNV NM_001164485:c.T389A:p.F130Y exonic Fam170b nonsynonymous SNV uc011ziq.1:c.T389A:p.F130Y exonic ENSMUSG00000078127 nonsynonymous SNV ENSMUST00000104926:c.T389A:p.F130Y 14qB NA NA chr14 33648784 GCTxTGA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987942 0.987943 0.999999 102 0 0 70.401916 0.457627 0.02 1.169093 32 27 950 752 60 60 0 0 TT 10.525446 35 0 946 0 KEEP + Fam170b NO UVC_2 chr14 33904131 33904131 G A exonic Wdfy4 synonymous SNV NM_001146022:c.C4735T:p.L1579L exonic Wdfy4 synonymous SNV uc007szk.2:c.C4735T:p.L1579L exonic ENSMUSG00000051506 synonymous SNV ENSMUST00000061753:c.C4735T:p.L1579L 14qB NA NA chr14 33904131 GCAxGAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 59 0 0 40.495832 0.583333 0.02 -0.210488 10 14 303 409 60 60 0 0 GG 9.625263 32 0 894 0 KEEP - Wdfy4 YES UVC_2 chr14 35235912 35235912 A G exonic Bmpr1a synonymous SNV NM_009758:c.T1000C:p.L334L exonic Bmpr1a synonymous SNV uc007tax.1:c.T1000C:p.L334L exonic ENSMUSG00000021796 synonymous SNV ENSMUST00000165280:c.T1000C:p.L334L 14qB NA NA chr14 35235912 CTAxCTT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 123 0 0 11.202455 0.128205 0.02 -0.342056 34 5 1007 153 60 60 0 0 AA 19.241332 64 0 1738 0 KEEP - Bmpr1a NO UVC_2 chr14 41807872 41807872 A T exonic Fam213a nonsynonymous SNV NM_027464:c.T598A:p.S200T exonic 5730469M10Rik nonsynonymous SNV uc007tci.1:c.T598A:p.S200T exonic ENSMUSG00000021792 nonsynonymous SNV ENSMUST00000153830:c.T631A:p.S211T 14qB NA NA chr14 41807872 CAGxGAG A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 83 0 0 27.996892 0.555556 0.02 -0.15786 8 10 245 286 60 60 0 0 AA 14.43833 48 0 1345 0 KEEP - Fam213a NO UVC_2 chr14 44023155 44023155 C A exonic 1700001F09Rik nonsynonymous SNV NM_027940:c.G372T:p.K124N exonic 1700001F09Rik nonsynonymous SNV uc007tcz.1:c.G372T:p.K124N exonic ENSMUSG00000072603 nonsynonymous SNV ENSMUST00000095918:c.G372T:p.K124N 14qC1 "Score=0.984157;Name=No.51054,chr14:42268032" NA chr14 44023155 CTCxTTC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 597 2 113 42.702353 0.129252 0.02 2.495244 128 19 3836 582 29 23 0 0 CC 121.522711 404 0 11550 0 KEEP - 1700001F09Rik NO UVC_2 chr14 44023156 44023156 T G exonic 1700001F09Rik nonsynonymous SNV NM_027940:c.A371C:p.K124T exonic 1700001F09Rik nonsynonymous SNV uc007tcz.1:c.A371C:p.K124T exonic ENSMUSG00000072603 nonsynonymous SNV ENSMUST00000095918:c.A371C:p.K124T 14qC1 "Score=0.984157;Name=No.51054,chr14:42268032" NA chr14 44023156 TCCxTCC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 595 3 113 38.988684 0.127517 0.02 2.083901 130 19 3845 546 29 23 0 0 TT 119.898225 399 0 10946 0 KEEP - 1700001F09Rik NO UVC_2 chr14 4503904 4503904 G A intergenic "Gm5796(dist=359502),Gm3264(dist=30127)" NA NA intronic Gm2897 NA NA intronic ENSMUSG00000091379 NA NA 14qA1 "Score=0.982936;Name=No.45087,chr14:7223366" NA chr14 4503904 GAAxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 602 16 247 23.082837 0.141026 0.02 1.199393 67 11 2026 316 22 22 0 0 GG 111.291631 370 0 10563 0 KEEP + Gm5796 YES UVC_2 chr14 47636146 47636146 A C exonic Samd4 nonsynonymous SNV NM_001163433:c.A88C:p.I30L exonic Samd4 nonsynonymous SNV uc007thp.1:c.A391C:p.I131L exonic ENSMUSG00000021838 nonsynonymous SNV ENSMUST00000125113:c.A88C:p.I30L 14qC1 NA NA chr14 47636146 TTGxTCC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 78 0 0 8.259666 0.137931 0.02 -0.263035 25 4 714 114 60 60 0 0 AA 11.39337 38 0 1016 0 KEEP + Samd4 NO UVC_2 chr14 49315554 49315554 C T ncRNA_intronic Otx2os1 NA NA ncRNA_intronic Otx2os1 NA NA downstream ENSMUSG00000093204 NA NA 14qC1 NA NA chr14 49315554 GGCxTTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 589 2 187 138.086902 0.522222 0.02 1.202146 43 47 1230 1427 60 60 0 0 CC 111.873087 372 0 10568 0 KEEP + Otx2os1 YES UVC_2 chr14 52036419 52036419 T C exonic Vmn2r88 nonsynonymous SNV NM_011686:c.T1582C:p.F528L exonic Vmn2r88 nonsynonymous SNV uc009vao.1:c.T1582C:p.F528L exonic ENSMUSG00000000606 nonsynonymous SNV ENSMUST00000159674:c.T1423C:p.F475L 14qC1 "Score=0.907926;Name=No.56970,chrX:121240954" NA chr14 52036419 GGAxTCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999862 0.999862 1 428 31 0 49.807404 0.235955 0.02 1.201905 68 21 1963 609 60 60 0 0 TT 84.487668 281 0 7610 0 KEEP + Vmn2r88 NO UVC_2 chr14 52473862 52473862 T G exonic "Ear6,Ear7" nonsynonymous SNV NM_017385:c.T190G:p.L64V exonic "Ear6,Ear7" nonsynonymous SNV uc011zkd.1:c.T190G:p.L64V exonic ENSMUSG00000062148 nonsynonymous SNV ENSMUST00000169070:c.T190G:p.L64V 14qC2 "Score=0.907973;Name=No.53116,chr14:44498867" NA chr14 52473862 GGCxTAA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 221 1 0 91.93135 0.546875 0.02 1.322225 29 35 886 944 60 60 0 0 TT 41.506004 138 0 3834 0 KEEP + Ear6 NO UVC_2 chr14 52847164 52847164 T C intronic Chd8 NA NA intronic Chd8 NA NA intronic ENSMUSG00000053754 NA NA 14qC2 NA NA chr14 52847164 ATGxTAG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457715 0.457757 0.999909 51 0 0 17.464325 0.318182 0.02 -0.192876 15 7 429 201 60 60 0 0 TT 7.21084 24 0 641 0 KEEP - Chd8 NO UVC_2 chr14 53373215 53373215 T A intergenic "Olfr1507(dist=257845),A430107P09Rik(dist=912400)" NA NA intronic Gm10905 NA NA intronic ENSMUSG00000076768 NA NA 14qC2 "Score=0.969859;Name=No.53366,chr14:54000000" NA chr14 53373215 TTCxTCC T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 176 2 0 7.69343 0.068966 0.02 1.383444 54 4 1656 121 60 29 0 0 TT 30.681172 102 0 2853 0 KEEP + Olfr1507 NO UVC_2 chr14 54837631 54837631 C T intergenic "A430107P09Rik(dist=549621),Dad1(dist=17529)" NA NA intronic "Gm16914,TCR-alphachain,Tcra" NA NA upstream;downstream "ENSMUSG00000076927;ENSMUSG00000076925,ENSMUSG00000076926" NA NA 14qC2 NA NA chr14 54837631 ACCxTCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.16246 0.162467 0.999957 47 0 0 24.597834 0.666667 0.02 -0.114025 4 8 124 241 60 60 0 0 CC 7.819688 26 0 731 0 KEEP + A430107P09Rik YES UVC_2 chr14 54878918 54878918 G C UTR5 Abhd4 NA NA intronic Abhd4 NA NA UTR5 ENSMUSG00000040997 NA NA 14qC2 NA NA chr14 54878918 CTGxCGT G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 169 0 0 53.395534 0.384615 0.02 1.436161 32 20 926 589 60 60 0 0 GG 26.343232 88 0 2351 0 KEEP + Abhd4 NO UVC_2 chr14 55087404 55087404 T G exonic Lrp10 nonsynonymous SNV NM_022993:c.T1213G:p.F405V exonic Lrp10 nonsynonymous SNV uc007twd.1:c.T1213G:p.F405V exonic ENSMUSG00000022175 nonsynonymous SNV ENSMUST00000022782:c.T1213G:p.F405V 14qC3 NA NA chr14 55087404 AACxTCC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899252 0.899314 0.999931 70 0 0 24.31157 0.285714 0.02 -0.368218 30 12 886 295 60 60 0 0 TT 7.512662 25 0 686 0 KEEP + Lrp10 NO UVC_2 chr14 55262834 55262834 C T exonic Acin1 nonsynonymous SNV NM_001242605:c.G1220A:p.R407H exonic Acin1 nonsynonymous SNV uc007twr.2:c.G1220A:p.R407H exonic "ENSMUSG00000022185,ENSMUSG00000091306" nonsynonymous SNV ENSMUST00000169818:c.C139T:p.R47W 14qC3 NA NA chr14 55262834 TCAxGGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 113 0 0 44.63505 0.470588 0.02 -0.297887 18 16 423 472 60 60 0 0 CC 17.422071 58 0 1403 0 KEEP - Acin1 YES UVC_2 chr14 55272289 55272289 T A ncRNA_exonic 4930579G18Rik NA NA intronic Acin1 NA NA ncRNA_exonic ENSMUSG00000040840 NA NA 14qC3 NA NA chr14 55272289 AAAxGGT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 56 0 0 6.935357 0.157895 0.02 -0.166469 16 3 442 91 70 60 0 0 TT 8.673135 29 0 724 0 KEEP - 4930579G18Rik NO UVC_2 chr14 55526899 55526899 C A exonic Slc22a17 nonsynonymous SNV NM_021551:c.G629T:p.G210V exonic Slc22a17 nonsynonymous SNV uc007txk.2:c.G986T:p.G329V exonic ENSMUSG00000022199 nonsynonymous SNV ENSMUST00000050772:c.G629T:p.G210V 14qC3 NA NA chr14 55526899 CCTxCCA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353723 0.353947 0.999366 44 0 0 12.330936 0.263158 0.02 -0.16662 14 5 414 147 60 60 0 0 CC 5.113911 17 0 483 0 KEEP - Slc22a17 NO UVC_2 chr14 55610752 55610752 T C exonic Myh7 nonsynonymous SNV NM_080728:c.A425G:p.Y142C exonic Myh7 nonsynonymous SNV uc007txv.1:c.A425G:p.Y142C exonic ENSMUSG00000053093 nonsynonymous SNV ENSMUST00000102803:c.A425G:p.Y142C 14qC3 NA NA chr14 55610752 CGGxAGG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 82 0 9 17.632307 0.259259 0.02 -0.245462 20 7 559 210 60 60 0 0 TT 11.724103 39 0 1012 0 KEEP - Myh7 NO UVC_2 chr14 60657836 60657836 C T exonic Atp8a2 nonsynonymous SNV NM_015803:c.G436A:p.A146T exonic Atp8a2 nonsynonymous SNV uc007uet.1:c.G436A:p.A146T exonic ENSMUSG00000021983 nonsynonymous SNV ENSMUST00000080368:c.G436A:p.A146T 14qD1 NA NA chr14 60657836 CTGxTGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 123 0 0 53.626885 0.487179 0.02 -0.342061 20 19 607 563 60 60 0 0 CC 19.844109 66 0 1855 0 KEEP - Atp8a2 YES UVC_2 chr14 60997284 60997284 G A exonic Amer2 synonymous SNV NM_001164705:c.G90A:p.K30K exonic Fam123a synonymous SNV uc007ufb.2:c.G90A:p.K30K exonic ENSMUSG00000021986 synonymous SNV ENSMUST00000022561:c.G90A:p.K30K 14qD1 NA NA chr14 60997284 CAAxAAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 74 0 0 25.16474 0.428571 0.02 -0.192969 12 9 372 271 60 60 0 0 GG 11.129506 37 0 1053 0 KEEP + Amer2 YES UVC_2 chr14 6107777 6107777 G T intergenic "Gm3383(dist=174224),Gm3494(dist=343957)" NA NA intronic "Gm10406,Gm2897" NA NA intronic ENSMUSG00000090643 NA NA 14qA1 "Score=0.974713;Name=No.41865,chr14:3130473" NA chr14 6107777 TTTxTCA G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1098 119 53 14.305044 0.032609 0.02 6.834438 267 9 8013 272 60 37 0 0 GG 196.441344 653 0 18786 0 KEEP - Gm3383 NO UVC_2 chr14 61831544 61831544 T G intronic Sacs NA NA intronic Sacs NA NA exonic ENSMUSG00000048279 nonsynonymous SNV ENSMUST00000074447:c.T12201G:p.I4067M 14qD1 NA NA chr14 61831544 TATxCCC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 70 2 0 9.479736 0.181818 0.02 -0.192963 18 4 542 121 60 60 0 0 TT 12.329329 41 0 1126 0 KEEP + Sacs NO UVC_2 chr14 65918041 65918041 T G exonic Fbxo16 nonsynonymous SNV NM_015795:c.T526G:p.F176V exonic Fbxo16 nonsynonymous SNV uc007ujc.1:c.T523G:p.F175V exonic ENSMUSG00000034532 nonsynonymous SNV ENSMUST00000043554:c.T526G:p.F176V 14qD1 NA NA chr14 65918041 GAAxTCA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 161 0 0 86.359714 0.58 0.02 -0.438529 21 29 612 873 60 60 0 0 TT 27.026527 90 0 2395 0 KEEP + Fbxo16 NO UVC_2 chr14 67635450 67635450 A C exonic Ppp2r2a nonsynonymous SNV NM_028032:c.T1105G:p.F369V exonic "Ppp2r2a,Ppp2r2d" nonsynonymous SNV uc007uku.2:c.T1105G:p.F369V exonic ENSMUSG00000022052 nonsynonymous SNV ENSMUST00000089230:c.T1291G:p.F431V 14qD1 NA NA chr14 67635450 CGAxCAT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 65 0 0 14.050252 0.193548 0.02 -0.271875 25 6 732 178 60 60 0 0 AA 7.518305 25 0 673 0 KEEP - Ppp2r2a NO UVC_2 chr14 68295529 68295529 T C exonic Cdca2 nonsynonymous SNV NM_001110162:c.A2337G:p.I779M exonic Cdca2 nonsynonymous SNV uc007ulb.2:c.A2337G:p.I779M exonic ENSMUSG00000048922 nonsynonymous SNV ENSMUST00000049543:c.A1854G:p.I618M 14qD1 NA NA chr14 68295529 TTTxATA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 200 1 0 47.378164 0.228916 0.02 1.146744 64 19 1867 577 60 60 0 0 TT 30.673191 102 0 2732 0 KEEP - Cdca2 NO UVC_2 chr14 70586750 70586750 G C exonic Sorbs3 synonymous SNV NM_001271409:c.C324G:p.P108P exonic Sorbs3 synonymous SNV uc007unk.1:c.C1380G:p.P460P exonic ENSMUSG00000022091 synonymous SNV ENSMUST00000022682:c.C1539G:p.P513P 14qD2 NA NA chr14 70586750 TGTxGGC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 445 0 0 58.261105 0.140097 0.02 6.14948 178 29 5367 808 60 60 0 0 GG 55.024547 183 0 5152 0 KEEP - Sorbs3 NO UVC_2 chr14 70624134 70624134 T C exonic Ppp3cc nonsynonymous SNV NM_008915:c.A1301G:p.K434R exonic Ppp3cc nonsynonymous SNV uc011znz.1:c.A797G:p.K266R exonic ENSMUSG00000022092 nonsynonymous SNV ENSMUST00000022685:c.A1301G:p.K434R 14qD2 NA NA chr14 70624134 TGCxTTC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 175 0 0 29.790061 0.154762 0.02 1.146649 71 13 2152 393 70 60 0 0 TT 18.649347 62 0 1739 0 KEEP - Ppp3cc NO UVC_2 chr14 75739307 75739307 T C intronic Zc3h13 NA NA intronic Zc3h13 NA NA intronic ENSMUSG00000022000 NA NA 14qD3 NA NA chr14 75739307 TAGxATA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 81 0 0 16.748175 0.189189 0.02 -0.32451 30 7 879 212 60 60 0 0 TT 11.12606 37 0 983 0 KEEP + Zc3h13 NO UVC_2 chr14 75992816 75992816 C T exonic Spert synonymous SNV NM_001164139:c.G51A:p.K17K exonic Spert synonymous SNV uc011zoo.1:c.G51A:p.K17K exonic ENSMUSG00000034913 synonymous SNV ENSMUST00000164082:c.G51A:p.K17K 14qD3 NA NA chr14 75992816 GGTxTTA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 0.999999 80 2 0 22.741539 0.28125 0.02 -0.280474 23 9 683 267 60 60 0 0 CC 10.829801 36 0 1034 0 KEEP - Spert YES UVC_2 chr14 76110324 76110324 T A intronic Cog3 NA NA intronic Cog3 NA NA intronic ENSMUSG00000034893 NA NA 14qD3 NA NA chr14 76110324 ATGxTTG T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 49 0 0 63.592521 0.904762 0.02 -0.184192 2 19 59 574 60 60 0 0 TT 6.014184 20 0 540 0 KEEP - Cog3 NO UVC_2 chr14 79960532 79960532 T C intronic Elf1 NA NA intronic Elf1 NA NA intronic ENSMUSG00000036461 NA NA 14qD3 NA NA chr14 79960532 TTCxCGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981954 0.981955 0.999999 106 0 0 86.582476 0.526316 0.02 1.491157 27 30 834 894 60 60 0 0 TT 10.527918 35 0 981 0 KEEP + Elf1 NO UVC_2 chr14 80417933 80417933 C T intronic Olfm4 NA NA intronic Olfm4 NA NA intronic ENSMUSG00000022026 NA NA 14qD3 NA NA chr14 80417933 CTTxCTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 218 0 0 73.871244 0.329412 0.02 1.146947 57 28 1739 839 60 60 0 0 CC 29.480217 98 0 2796 0 KEEP + Olfm4 YES UVC_2 chr14 8742263 8742263 A G exonic Flnb nonsynonymous SNV NM_134080:c.A4202G:p.Y1401C exonic Flnb nonsynonymous SNV uc007sek.1:c.A4202G:p.Y1401C exonic ENSMUSG00000025278 nonsynonymous SNV ENSMUST00000052678:c.A4202G:p.Y1401C 14qA1 NA NA chr14 8742263 CGTxCGG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 135 1 0 37.09234 0.263158 0.02 1.491224 42 15 1213 442 60 60 0 0 AA 17.140407 57 0 1517 0 KEEP + Flnb NO UVC_2 chr14 87874560 87874560 G A exonic Tdrd3 synonymous SNV NM_001253755:c.G408A:p.K136K exonic Tdrd3 synonymous SNV uc007uuf.2:c.G408A:p.K136K exonic ENSMUSG00000022019 synonymous SNV ENSMUST00000163714:c.G129A:p.K43K 14qE1 NA NA chr14 87874560 AAAxAAC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 170 0 0 135.469024 0.625 0.02 1.359624 27 45 831 1347 60 60 0 0 GG 23.161092 77 0 2183 0 KEEP + Tdrd3 YES UVC_2 chr14 9184658 9184658 A G exonic Oit1 nonsynonymous SNV NM_146050:c.T520C:p.F174L exonic Oit1 nonsynonymous SNV uc007sfd.1:c.T520C:p.F174L exonic ENSMUSG00000021749 nonsynonymous SNV ENSMUST00000022269:c.T520C:p.F174L 14qA1 NA NA chr14 9184658 GGAxGCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.289978 0.292001 0.993072 30 0 0 10.131063 0.266667 0.02 -0.149109 11 4 335 120 60 60 0 0 AA 3.30809 11 0 302 0 KEEP - Oit1 NO UVC_2 chr14 99486956 99486956 C A exonic Dis3 nonsynonymous SNV NM_028315:c.G1500T:p.L500F exonic Dis3 nonsynonymous SNV uc007uuw.1:c.G1500T:p.L500F exonic ENSMUSG00000033166 nonsynonymous SNV ENSMUST00000042471:c.G1500T:p.L500F 14qE2.2 NA NA chr14 99486956 CTCxAAG C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 56 4 0 19.377448 0.4375 0.02 -0.140321 9 7 263 208 60 60 0 0 CC 9.325085 31 0 877 0 KEEP - Dis3 NO UVC_2 chr15 100090308 100090308 T C exonic Atf1 nonsynonymous SNV NM_007497:c.T728C:p.V243A exonic Atf1 nonsynonymous SNV uc007xqs.1:c.T728C:p.V243A exonic ENSMUSG00000023027 nonsynonymous SNV ENSMUST00000023769:c.T728C:p.V243A 15qF1 "Score=0.979061;Name=No.61460,chrX:51185497" NA chr15 100090308 GTGxTGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161897 0.162467 0.99649 29 0 1 7.382183 0.230769 0.02 -0.114013 10 3 293 90 60 60 0 0 TT 4.810737 16 0 433 0 KEEP + Atf1 NO UVC_2 chr15 100947358 100947358 G C exonic Ankrd33 nonsynonymous SNV NM_144790:c.G194C:p.G65A exonic Ankrd33 nonsynonymous SNV uc007xsk.1:c.G194C:p.G65A exonic ENSMUSG00000047034 nonsynonymous SNV ENSMUST00000050450:c.G164C:p.G55A 15qF2 NA NA chr15 100947358 CTGxCCT G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 61 0 0 23.89928 0.36 0.02 -0.219271 16 9 480 267 60 60 0 0 GG 8.953498 30 0 775 0 KEEP + Ankrd33 NO UVC_2 chr15 101244393 101244393 C T intronic Krt7 NA NA intronic Krt7 NA NA intronic ENSMUSG00000023039 NA NA 15qF2 NA NA chr15 101244393 ACCxCTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.999859 37 0 0 20.998415 0.533333 0.02 -0.131402 7 8 209 217 60 60 0 0 CC 5.413913 18 0 500 0 KEEP + Krt7 YES UVC_2 chr15 101400737 101400737 T C exonic Krt75 nonsynonymous SNV NM_133357:c.A892G:p.N298D exonic Krt75 nonsynonymous SNV uc007xtp.1:c.A892G:p.N298D exonic ENSMUSG00000022986 nonsynonymous SNV ENSMUST00000042957:c.A892G:p.N298D 15qF2 NA NA chr15 101400737 GGTxCTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 98 0 0 44.941713 0.4 0.02 -0.350843 24 16 723 490 60 60 0 0 TT 14.437571 48 0 1333 0 KEEP - Krt75 NO UVC_2 chr15 101400738 101400738 C T exonic Krt75 synonymous SNV NM_133357:c.G891A:p.Q297Q exonic Krt75 synonymous SNV uc007xtp.1:c.G891A:p.Q297Q exonic ENSMUSG00000022986 synonymous SNV ENSMUST00000042957:c.G891A:p.Q297Q 15qF2 NA NA chr15 101400738 GTTxTGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 97 0 0 41.671017 0.384615 0.02 -0.342078 24 15 732 458 60 60 0 0 CC 13.838421 46 0 1324 0 KEEP - Krt75 YES UVC_2 chr15 101632632 101632632 C T exonic Krt73 nonsynonymous SNV NM_212485:c.G97A:p.A33T exonic Krt73 nonsynonymous SNV uc007xua.1:c.G97A:p.A33T exonic ENSMUSG00000063661 nonsynonymous SNV ENSMUST00000063292:c.G97A:p.A33T 15qF2 NA NA chr15 101632632 CTGxCCG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 232 0 0 155.032317 0.604651 0.02 1.236868 34 52 1023 1553 60 60 0 0 CC 34.887099 116 0 3202 0 KEEP - Krt73 YES UVC_2 chr15 101718609 101718609 C T exonic Krt76 synonymous SNV NM_001033177:c.G1194A:p.E398E exonic Krt76 synonymous SNV uc007xue.1:c.G1194A:p.E398E exonic ENSMUSG00000075402 synonymous SNV ENSMUST00000100179:c.G1194A:p.E398E 15qF3 NA NA chr15 101718609 AATxTCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.580884 0.58293 0.99649 44 0 0 27.447304 0.384615 0.02 -0.228045 16 10 484 302 60 60 0 0 CC 4.511859 15 0 423 0 KEEP - Krt76 YES UVC_2 chr15 102333949 102333949 A G exonic Map3k12 synonymous SNV NM_009582:c.T1110C:p.D370D exonic Map3k12 synonymous SNV uc007xwd.2:c.T1110C:p.D370D exonic ENSMUSG00000023050 synonymous SNV ENSMUST00000023812:c.T1110C:p.D370D 15qF3 NA NA chr15 102333949 ACCxTCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 68 0 0 12.951731 0.225806 0.02 -0.271803 24 7 702 168 60 60 0 0 AA 9.311032 31 0 824 0 KEEP - Map3k12 NO UVC_2 chr15 102844729 102844729 C A exonic Hoxc5 nonsynonymous SNV NM_175730:c.C217A:p.R73S exonic Hoxc5 nonsynonymous SNV uc007xxe.1:c.C217A:p.R73S exonic ENSMUSG00000022485 nonsynonymous SNV ENSMUST00000001709:c.C217A:p.R73S 15qF3 NA NA chr15 102844729 GACxGCC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 69 0 0 19.741674 0.36 0.02 -0.217674 16 9 411 226 60 60 0 0 CC 9.275879 31 0 712 0 KEEP + Hoxc5 NO UVC_2 chr15 103078894 103078894 G A exonic Nfe2 nonsynonymous SNV NM_008685:c.C1100T:p.T367I exonic Nfe2 nonsynonymous SNV uc007xxu.1:c.C1100T:p.T367I exonic ENSMUSG00000058794 nonsynonymous SNV ENSMUST00000134554:c.C1100T:p.T367I 15qF3 NA NA chr15 103078894 TTGxTTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 110 0 0 45.850738 0.369565 0.02 -0.41223 29 17 868 509 60 60 0 0 GG 12.331512 41 0 1138 0 KEEP - Nfe2 YES UVC_2 chr15 103178368 103178368 T G exonic Itga5 synonymous SNV NM_010577:c.A2694C:p.R898R exonic Itga5 synonymous SNV uc007xyb.2:c.A2694C:p.R898R exonic ENSMUSG00000000555 synonymous SNV ENSMUST00000023128:c.A2694C:p.R898R 15qF3 NA NA chr15 103178368 CTCxCGT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 141 2 0 80.816753 0.484375 0.02 1.232385 33 31 995 853 60 60 0 0 TT 16.84385 56 0 1562 0 KEEP - Itga5 NO UVC_2 chr15 10422902 10422902 C T intronic Rad1 NA NA UTR3 Rad1 NA NA intronic ENSMUSG00000022248 NA NA 15qA1 NA NA chr15 10422902 TCTxCCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 267 2 0 124.165192 0.52439 0.02 1.26312 39 43 1189 1283 60 60 0 0 CC 40.896547 136 0 3862 0 KEEP + Rad1 YES UVC_2 chr15 30261881 30261881 C T exonic Ctnnd2 nonsynonymous SNV NM_008729:c.C154T:p.L52F exonic Ctnnd2 nonsynonymous SNV uc007vjz.1:c.C154T:p.L52F exonic ENSMUSG00000022240 nonsynonymous SNV ENSMUST00000081728:c.C154T:p.L52F 15qB2 NA NA chr15 30261881 ATCxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.899307 0.899314 0.999992 94 0 0 74.210184 0.595238 0.02 -0.368356 17 25 511 746 60 60 0 0 CC 12.333205 41 0 1162 0 KEEP + Ctnnd2 YES UVC_2 chr15 31387055 31387055 A G UTR3 March6 NA NA UTR3 March6 NA NA exonic ENSMUSG00000039100 synonymous SNV ENSMUST00000043826:c.T1965C:p.I655I 15qB2 NA NA chr15 31387055 CACxATA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 98 0 0 24.2654 0.23913 0.02 -0.40316 35 11 1029 300 60 60 0 0 AA 11.703381 39 0 1047 0 KEEP - March6 NO UVC_2 chr15 33616751 33616751 A C exonic Tspyl5 nonsynonymous SNV NM_001085421:c.T802G:p.L268V exonic Tspyl5 nonsynonymous SNV uc007vld.1:c.T802G:p.L268V exonic ENSMUSG00000038984 nonsynonymous SNV ENSMUST00000042021:c.T802G:p.L268V 15qB3.1 NA NA chr15 33616751 TCAxTAC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 108 0 0 51.281996 0.327869 0.02 1.357182 41 20 1209 585 60 60 0 0 AA 12.629602 42 0 1136 0 KEEP - Tspyl5 NO UVC_2 chr15 34442816 34442816 T G intronic Pop1 NA NA intronic Pop1 NA NA intronic ENSMUSG00000022325 NA NA 15qB3.1 NA NA chr15 34442816 GTGxCTT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 171 0 0 30.158047 0.178082 0.02 1.252138 60 13 1738 388 60 60 0 0 TT 22.85672 76 0 2071 0 KEEP + Pop1 NO UVC_2 chr15 35527237 35527237 T G exonic Vps13b nonsynonymous SNV NM_177151:c.T3167G:p.I1056S exonic Vps13b nonsynonymous SNV uc007vmh.2:c.T3167G:p.I1056S exonic ENSMUSG00000037646 nonsynonymous SNV ENSMUST00000022887:c.T14G:p.I5S 15qB3.1 NA NA chr15 35527237 TTAxCGC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387356 0.387407 0.999869 46 0 0 12.702075 0.25 0.02 -0.175413 15 5 447 152 60 60 0 0 TT 6.315327 21 0 567 0 KEEP + Vps13b NO UVC_2 chr15 5126770 5126770 G A exonic Prkaa1 nonsynonymous SNV NM_001013367:c.G1106A:p.R369Q exonic Prkaa1 nonsynonymous SNV uc007vct.1:c.G1106A:p.R369Q exonic ENSMUSG00000050697 nonsynonymous SNV ENSMUST00000051186:c.G1106A:p.R369Q 15qA1 NA NA chr15 5126770 CTCxGCC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909066 0.909069 0.999997 84 0 0 37.297942 0.325581 0.02 -0.377078 29 14 817 424 60 60 0 0 GG 9.320871 31 0 831 0 KEEP + Prkaa1 YES UVC_2 chr15 60751723 60751723 C T exonic A1bg nonsynonymous SNV NM_001081067:c.G610A:p.E204K exonic A1bg nonsynonymous SNV uc007vyd.1:c.G610A:p.E204K exonic ENSMUSG00000022347 nonsynonymous SNV ENSMUST00000096418:c.G610A:p.E204K 15qD1 NA NA chr15 60751723 GTTxACC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 98 0 0 74.652471 0.509804 0.02 1.444869 25 26 755 776 60 60 0 0 CC 11.732568 39 0 1124 0 KEEP - A1bg YES UVC_2 chr15 66744465 66744465 T C exonic Wisp1 nonsynonymous SNV NM_018865:c.T424C:p.Y142H exonic Wisp1 nonsynonymous SNV uc007wau.1:c.T424C:p.Y142H exonic ENSMUSG00000005124 nonsynonymous SNV ENSMUST00000005255:c.T424C:p.Y142H 15qD2 NA NA chr15 66744465 AGGxACA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 136 0 0 53.047337 0.31746 0.02 1.438671 43 20 1208 606 60 60 0 0 TT 18.031944 60 0 1559 0 KEEP + Wisp1 NO UVC_2 chr15 6726042 6726042 C T intronic Rictor NA NA intronic Rictor NA NA intronic ENSMUSG00000050310 NA NA 15qA1 NA NA chr15 6726042 CTTxATT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760854 0.760887 0.999957 67 2 0 22.497146 0.272727 0.02 -0.289441 24 9 732 266 60 60 0 0 CC 7.821893 26 0 752 0 KEEP + Rictor YES UVC_2 chr15 71782742 71782742 T C intronic Col22a1 NA NA intronic Col22a1 NA NA intronic ENSMUSG00000079022 NA NA 15qD3 NA NA chr15 71782742 AAAxACT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 204 4 0 35.846138 0.238806 0.02 1.304884 51 16 1461 442 60 60 0 0 TT 30.370422 101 0 2681 0 KEEP - Col22a1 NO UVC_2 chr15 71783031 71783031 A C intronic Col22a1 NA NA intronic Col22a1 NA NA intronic ENSMUSG00000079022 NA NA 15qD3 NA NA chr15 71783031 ACCxATT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973962 0.973965 0.999997 88 0 0 72.607944 0.471698 0.02 1.517465 28 25 842 766 60 60 0 0 AA 9.021788 30 0 816 0 KEEP - Col22a1 NO UVC_2 chr15 75955565 75955565 C T exonic BC024139 synonymous SNV NM_001142968:c.G678A:p.E226E exonic BC024139 synonymous SNV uc007wip.2:c.G678A:p.E226E exonic ENSMUSG00000044361 synonymous SNV ENSMUST00000054022:c.G678A:p.E226E 15qD3 NA NA chr15 75955565 CCCxTCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 104 0 0 61.079677 0.512195 0.02 -0.359605 20 21 596 634 60 60 0 0 CC 13.82433 46 0 1277 0 KEEP - BC024139 YES UVC_2 chr15 76004555 76004555 G A exonic Plec synonymous SNV NM_011117:c.C11764T:p.L3922L exonic Plec synonymous SNV uc007wir.2:c.C11677T:p.L3893L exonic ENSMUSG00000022565 synonymous SNV ENSMUST00000023226:c.C11677T:p.L3893L 15qD3 NA NA chr15 76004555 CCAxCTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993701 0.993703 0.999998 107 0 0 39.306852 0.25 0.02 1.232232 48 16 1438 473 60 60 0 0 GG 10.213858 34 0 939 0 KEEP - Plec YES UVC_2 chr15 76021728 76021728 A T exonic Plec nonsynonymous SNV NM_011117:c.T856A:p.S286T exonic Plec nonsynonymous SNV uc007wir.2:c.T769A:p.S257T exonic ENSMUSG00000022565 nonsynonymous SNV ENSMUST00000023226:c.T769A:p.S257T 15qD3 NA NA chr15 76021728 GGGxTGA A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999996 0.999996 1 213 0 0 60.345876 0.230088 0.02 2.784873 87 26 2512 744 60 60 0 0 AA 22.502522 75 0 1990 0 KEEP - Plec NO UVC_2 chr15 76165236 76165236 A G exonic Gpaa1 nonsynonymous SNV NM_010331:c.A1847G:p.N616S exonic Gpaa1 nonsynonymous SNV uc007wjr.1:c.A1847G:p.N616S exonic ENSMUSG00000022561 nonsynonymous SNV ENSMUST00000172281:c.A1667G:p.N556S 15qD3 NA NA chr15 76165236 GGAxTGT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 148 2 0 52.792001 0.318182 0.02 1.31339 45 21 1304 607 60 60 0 0 AA 21.317924 71 0 1903 0 KEEP + Gpaa1 NO UVC_2 chr15 76202634 76202634 C T exonic Tssk5 synonymous SNV NM_183099:c.G1014A:p.R338R exonic Tssk5 synonymous SNV uc007wka.1:c.G1014A:p.R338R exonic ENSMUSG00000060794 synonymous SNV ENSMUST00000071119:c.G1014A:p.R338R 15qD3 NA NA chr15 76202634 ATGxCTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119875 0.120436 0.995343 30 0 0 10.776964 0.363636 0.02 -0.09648 7 4 209 120 60 60 0 0 CC 4.211107 14 0 391 0 KEEP - Tssk5 YES UVC_2 chr15 76881552 76881552 C T exonic Apol6 nonsynonymous SNV NM_001163621:c.C590T:p.S197L exonic Apol6 nonsynonymous SNV uc007wmz.2:c.C590T:p.S197L exonic ENSMUSG00000033576 nonsynonymous SNV ENSMUST00000127957:c.C590T:p.S197L 15qD3 NA NA chr15 76881552 CCTxAGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 111 0 0 112.291705 0.655172 0.02 1.383513 20 38 603 1104 60 60 0 0 CC 14.740588 49 0 1403 0 KEEP + Apol6 YES UVC_2 chr15 77594271 77594271 A C exonic Myh9 nonsynonymous SNV NM_022410:c.T5434G:p.L1812V exonic Myh9 nonsynonymous SNV uc007woc.1:c.T5434G:p.L1812V exonic ENSMUSG00000022443 nonsynonymous SNV ENSMUST00000016771:c.T5434G:p.L1812V 15qE1 NA NA chr15 77594271 CCAxGGC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 247 0 0 52.276504 0.205128 0.02 2.56093 93 24 2808 666 60 60 0 0 AA 31.566629 105 0 2902 0 KEEP - Myh9 NO UVC_2 chr15 78115697 78115697 C T exonic Csf2rb2 nonsynonymous SNV NM_007781:c.G1687A:p.E563K exonic Csf2rb2 nonsynonymous SNV uc011zvm.1:c.G1360A:p.E454K exonic ENSMUSG00000071714 nonsynonymous SNV ENSMUST00000096678:c.G1360A:p.E454K 15qE1 "Score=0.911766;Name=No.57810,chr15:78111728" NA chr15 78115697 ATTxAGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 141 0 2 18.026103 0.153846 0.02 1.365978 44 8 1326 239 60 60 0 0 CC 19.547157 65 0 1801 0 KEEP - Csf2rb2 YES UVC_2 chr15 78711558 78711558 T G intronic Gga1 NA NA intronic Gga1 NA NA intronic ENSMUSG00000033128 NA NA 15qE1 NA NA chr15 78711558 AGGxGGC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999999 65 0 0 9.070775 0.190476 0.02 -0.184057 17 4 477 116 60 60 0 0 TT 10.520343 35 0 936 0 KEEP + Gga1 NO UVC_2 chr15 78865654 78865654 T A intronic Gcat NA NA intronic Gcat NA NA intronic ENSMUSG00000006378 NA NA 15qE1 NA NA chr15 78865654 TACxTCT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 91 0 0 8.575454 0.125 0.02 -0.280675 28 4 850 119 60 60 0 0 TT 13.836293 46 0 1288 0 KEEP + Gcat NO UVC_2 chr15 78916845 78916845 C T intronic Eif3l NA NA intronic Eif3l NA NA intronic ENSMUSG00000033047 NA NA 15qE1 NA NA chr15 78916845 CTGxTTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260928 0.260965 0.999859 43 0 0 8.802352 0.25 0.02 -0.140259 12 4 337 108 60 60 0 0 CC 5.41467 18 0 512 0 KEEP + Eif3l YES UVC_2 chr15 79081792 79081792 C T exonic Slc16a8 synonymous SNV NM_020516:c.G1245A:p.K415K exonic Slc16a8 synonymous SNV uc007wta.1:c.G1245A:p.K415K exonic ENSMUSG00000032988 synonymous SNV ENSMUST00000039752:c.G1245A:p.K415K 15qE1 NA NA chr15 79081792 GTTxTTA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963771 0.963774 0.999997 89 0 0 88.600854 0.588235 0.02 1.543804 21 30 634 893 60 60 0 0 CC 9.023922 30 0 854 0 KEEP - Slc16a8 YES UVC_2 chr15 79207455 79207455 C G intronic Tmem184b NA NA intronic Tmem184b NA NA intronic ENSMUSG00000009035 NA NA 15qE1 NA NA chr15 79207455 AAGxCCC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 96 0 0 20.003366 0.25 0.02 -0.280655 24 8 713 240 60 60 0 0 CC 14.433488 48 0 1301 0 KEEP - Tmem184b NO UVC_2 chr15 79496423 79496423 G A intronic Cby1 NA NA intronic Cby1 NA NA intronic ENSMUSG00000022428 NA NA 15qE1 NA NA chr15 79496423 AGGxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668522 0.668523 0.999999 71 1 0 17.302621 0.25 0.02 -0.254363 21 7 643 208 60 60 0 0 GG 10.223658 34 0 959 0 KEEP + Cby1 YES UVC_2 chr15 81479973 81479973 C T exonic Ep300 stopgain SNV NM_177821:c.C5800T:p.Q1934X exonic Ep300 stopgain SNV uc007wws.1:c.C5800T:p.Q1934X exonic ENSMUSG00000055024 stopgain SNV ENSMUST00000068387:c.C5800T:p.Q1934X 15qE1 NA NA chr15 81479973 ATTxAGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 103 0 0 85.593005 0.555556 0.02 1.418576 24 30 739 874 60 60 0 0 CC 12.930616 43 0 1216 0 KEEP + Ep300 YES UVC_2 chr15 8177356 8177356 A G exonic 2410089E03Rik nonsynonymous SNV NM_001162906:c.A6107G:p.H2036R exonic 2410089E03Rik nonsynonymous SNV uc007ven.2:c.A6107G:p.H2036R exonic ENSMUSG00000039801 nonsynonymous SNV ENSMUST00000110617:c.A6107G:p.H2036R 15qA1 NA NA chr15 8177356 TGCxTGG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 67 0 0 12.953439 0.222222 0.02 -0.271855 21 6 616 163 60 60 0 0 AA 8.421055 28 0 764 0 KEEP + 2410089E03Rik NO UVC_2 chr15 8177364 8177364 C T exonic 2410089E03Rik nonsynonymous SNV NM_001162906:c.C6115T:p.L2039F exonic 2410089E03Rik nonsynonymous SNV uc007ven.2:c.C6115T:p.L2039F exonic ENSMUSG00000039801 nonsynonymous SNV ENSMUST00000110617:c.C6115T:p.L2039F 15qA1 NA NA chr15 8177364 CTTxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 67 0 0 35.602007 0.464286 0.02 -0.271888 15 13 455 378 60 60 0 0 CC 8.422613 28 0 802 0 KEEP + 2410089E03Rik YES UVC_2 chr15 8177365 8177365 T A exonic 2410089E03Rik nonsynonymous SNV NM_001162906:c.T6116A:p.L2039H exonic 2410089E03Rik nonsynonymous SNV uc007ven.2:c.T6116A:p.L2039H exonic ENSMUSG00000039801 nonsynonymous SNV ENSMUST00000110617:c.T6116A:p.L2039H 15qA1 NA NA chr15 8177365 TTCxTCA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717313 0.717315 0.999997 66 0 0 35.402044 0.464286 0.02 -0.271888 15 13 455 376 60 60 0 0 TT 8.388245 28 0 769 0 KEEP + 2410089E03Rik NO UVC_2 chr15 81872469 81872469 A G UTR3 Nhp2l1 NA NA UTR3 Nhp2l1 NA NA UTR3 ENSMUSG00000063480 NA NA 15qE1 "Score=0.992248;Name=No.58170,chr17:35472975" NA chr15 81872469 AGTxCAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 266 0 70 9.936045 0.073529 0.02 1.287225 63 5 1796 153 57 23 0 0 AA 46.007046 153 0 4058 0 KEEP - Nhp2l1 NO UVC_2 chr15 82622876 82622876 G T intronic Cyp2d26 NA NA intronic Cyp2d26 NA NA intronic ENSMUSG00000022445 NA NA 15qE1 NA NA chr15 82622876 CAGxCCC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099505 0.099721 0.997832 29 0 0 7.480408 0.3 0.02 -0.087616 7 3 198 87 60 60 0 0 GG 4.512027 15 0 421 0 KEEP - Cyp2d26 NO UVC_2 chr15 84533183 84533183 A G exonic Prr5 nonsynonymous SNV NM_146061:c.A730G:p.I244V exonic Prr5 nonsynonymous SNV uc007xcf.1:c.A730G:p.I244V exonic ENSMUSG00000036106 nonsynonymous SNV ENSMUST00000065499:c.A730G:p.I244V 15qE2 NA NA chr15 84533183 GATxTCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 116 0 0 35.427475 0.269231 0.02 1.535082 38 14 1087 419 60 60 0 0 AA 15.93746 53 0 1411 0 KEEP + Prr5 NO UVC_2 chr15 84770217 84770217 T C exonic Nup50 nonsynonymous SNV NM_016714:c.T1340C:p.V447A exonic Nup50 nonsynonymous SNV uc007xcq.1:c.T1340C:p.V447A exonic ENSMUSG00000016619 nonsynonymous SNV ENSMUST00000165443:c.T1340C:p.V447A 15qE2 NA NA chr15 84770217 GGGxGAA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.800025 0.800245 0.999725 75 0 0 13.341641 0.205882 0.02 -0.306523 27 7 751 175 60 60 0 0 TT 9.921337 33 0 887 0 KEEP + Nup50 NO UVC_2 chr15 84968548 84968548 C T intronic Ribc2 NA NA intronic Ribc2 NA NA intronic ENSMUSG00000022431 NA NA 15qE2 NA NA chr15 84968548 CTTxCCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552886 0.552887 0.999997 63 0 0 15.08336 0.24 0.02 -0.219087 19 6 565 182 60 60 0 0 CC 9.024372 30 0 849 0 KEEP + Ribc2 YES UVC_2 chr15 85374099 85374099 C T exonic Wnt7b synonymous SNV NM_001163633:c.G369A:p.K123K exonic Wnt7b synonymous SNV uc007xde.2:c.G582A:p.K194K exonic ENSMUSG00000022382 synonymous SNV ENSMUST00000023015:c.G570A:p.K190K 15qE2 NA NA chr15 85374099 TACxTTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260399 0.260965 0.997832 37 0 0 16.878191 0.4 0.02 -0.140338 9 6 271 184 60 60 0 0 CC 4.792715 16 0 431 0 KEEP - Wnt7b YES UVC_2 chr15 85958041 85958041 T G exonic Gramd4 nonsynonymous SNV NM_001205353:c.T869G:p.L290R exonic Gramd4 nonsynonymous SNV uc007xdv.2:c.T944G:p.L315R exonic ENSMUSG00000035900 nonsynonymous SNV ENSMUST00000088931:c.T944G:p.L315R 15qE2 NA NA chr15 85958041 TTCxGAG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9484 0.948402 0.999998 94 0 0 24.430535 0.229167 0.02 -0.420959 37 11 1109 304 60 60 0 0 TT 10.226298 34 0 938 0 KEEP + Gramd4 NO UVC_2 chr15 86122631 86122631 C T exonic Tbc1d22a synonymous SNV NM_145476:c.C702T:p.L234L exonic Tbc1d22a synonymous SNV uc007xea.1:c.C702T:p.L234L exonic ENSMUSG00000051864 synonymous SNV ENSMUST00000063414:c.C702T:p.L234L 15qE2 NA NA chr15 86122631 TCTxTCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 126 0 0 40.806198 0.405405 0.02 -0.324531 22 15 676 445 60 60 0 0 CC 22.863123 76 0 2182 0 KEEP + Tbc1d22a YES UVC_2 chr15 88521732 88521732 A G exonic Brd1 synonymous SNV NM_001033274:c.T3027C:p.P1009P exonic Brd1 synonymous SNV uc007xej.2:c.T816C:p.P272P exonic ENSMUSG00000022387 synonymous SNV ENSMUST00000109380:c.T2634C:p.P878P 15qE3 NA NA chr15 88521732 GGCxGGT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 147 0 0 25.396984 0.203704 0.02 1.418548 43 11 1315 320 60 60 0 0 AA 24.664155 82 0 2284 0 KEEP - Brd1 NO UVC_2 chr15 88531156 88531156 T C intronic Brd1 NA NA exonic Brd1 synonymous SNV uc007xel.2:c.A2511G:p.P837P exonic ENSMUSG00000022387 synonymous SNV ENSMUST00000023022:c.A2511G:p.P837P 15qE3 NA NA chr15 88531156 CCAxGGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161555 0.162467 0.994391 29 0 0 14.661783 0.461538 0.02 -0.113976 7 6 204 157 60 60 0 0 TT 3.909682 13 0 353 0 KEEP - Brd1 NO UVC_2 chr15 88614587 88614587 T C UTR3 Zbed4 NA NA UTR3 Zbed4 NA NA UTR3 ENSMUSG00000034333 NA NA 15qE3 "Score=0.987994;Name=No.27205,chr12:45718893" NA chr15 88614587 CAGxCAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 136 2 7 40.783204 0.296296 0.02 1.418566 38 16 1132 474 60 60 0 0 TT 18.639538 62 0 1663 0 KEEP + Zbed4 NO UVC_2 chr15 88694839 88694839 A G exonic Pim3 nonsynonymous SNV NM_145478:c.A710G:p.D237G exonic Pim3 nonsynonymous SNV uc007xeq.1:c.A710G:p.D237G exonic ENSMUSG00000035828 nonsynonymous SNV ENSMUST00000042818:c.A710G:p.D237G 15qE3 NA NA chr15 88694839 ACGxCAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 107 3 0 33.366764 0.276596 0.02 -0.412233 34 13 1017 392 60 60 0 0 AA 14.434713 48 0 1294 0 KEEP + Pim3 NO UVC_2 chr15 89098910 89098910 A G intronic Ppp6r2 NA NA intronic Ppp6r2 NA NA intronic ENSMUSG00000036561 NA NA 15qE3 NA NA chr15 89098910 AGCxCTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 60 1 0 6.982406 0.181818 0.02 -0.192926 18 4 542 96 60 60 0 0 AA 7.51895 25 0 683 0 KEEP + Ppp6r2 NO UVC_2 chr15 91729873 91729873 A T exonic Muc19 nonsynonymous SNV NM_207243:c.A3439T:p.I1147F exonic Muc19 nonsynonymous SNV uc007xie.1:c.A3439T:p.I1147F exonic ENSMUSG00000044021 nonsynonymous SNV ENSMUST00000160242:c.A3439T:p.I1147F 15qE3 NA NA chr15 91729873 GTCxTTG A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999997 59 2 0 36.392606 0.631579 0.02 -0.166644 7 12 206 361 60 60 0 0 AA 9.31371 31 0 826 0 KEEP + Muc19 NO UVC_2 chr15 93216743 93216743 A G intronic Zcrb1 NA NA intronic Zcrb1 NA NA intronic ENSMUSG00000022635 NA NA 15qE3 NA NA chr15 93216743 AATxAAA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 143 0 0 45.382716 0.303571 0.02 1.499929 39 17 1166 522 60 60 0 0 AA 22.257383 74 0 2044 0 KEEP - Zcrb1 NO UVC_2 chr15 96201343 96201343 A C exonic Arid2 nonsynonymous SNV NM_175251:c.A2905C:p.T969P exonic Arid2 nonsynonymous SNV uc007xkd.2:c.A2905C:p.T969P exonic ENSMUSG00000033237 nonsynonymous SNV ENSMUST00000058749:c.A2335C:p.T779P 15qF1 NA NA chr15 96201343 ATAxCTC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 225 0 0 53.192665 0.269231 0.02 1.181918 57 21 1636 629 60 70 0 0 AA 31.59802 107 1 2869 5 KEEP + Arid2 NO UVC_2 chr15 97795257 97795257 C T intronic Tmem106c NA NA ncRNA_exonic AK177749 NA NA intronic ENSMUSG00000052369 NA NA 15qF1 NA NA chr15 97795257 CCCxCCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 44 1 0 53.672511 0.73913 0.02 -0.201716 6 17 177 513 60 60 0 0 CC 5.10913 17 0 452 0 KEEP + Tmem106c YES UVC_2 chr15 97795258 97795258 C T intronic Tmem106c NA NA ncRNA_exonic AK177749 NA NA intronic ENSMUSG00000052369 NA NA 15qF1 NA NA chr15 97795258 CCCxCTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 44 1 0 52.570679 0.73913 0.02 -0.201691 6 17 175 502 60 60 0 0 CC 5.112179 17 0 459 0 KEEP + Tmem106c YES UVC_2 chr15 97795433 97795433 C T exonic Tmem106c synonymous SNV NM_001252153:c.C153T:p.T51T exonic Tmem106c synonymous SNV uc007xlm.1:c.C153T:p.T51T exonic ENSMUSG00000052369 synonymous SNV ENSMUST00000064200:c.C153T:p.T51T 15qF1 NA NA chr15 97795433 CACxTGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260399 0.260965 0.997832 36 0 0 30.973079 0.625 0.02 -0.140335 6 10 174 308 60 60 0 0 CC 4.813305 16 0 459 0 KEEP + Tmem106c YES UVC_2 chr15 98635848 98635848 T C exonic Ddn nonsynonymous SNV NM_001013741:c.A1993G:p.T665A exonic Ddn nonsynonymous SNV uc007xny.1:c.A1993G:p.T665A exonic ENSMUSG00000059213 nonsynonymous SNV ENSMUST00000075444:c.A1993G:p.T665A 15qF1 NA NA chr15 98635848 GGGxGTT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800236 0.800245 0.999988 68 0 0 8.161943 0.142857 0.02 -0.306877 30 5 884 120 60 60 0 0 TT 8.119797 27 0 728 0 KEEP - Ddn NO UVC_2 chr15 98669727 98669727 G C exonic Kmt2d nonsynonymous SNV NM_001033276:c.C15918G:p.F5306L exonic Mll2 nonsynonymous SNV uc007xoc.2:c.C15918G:p.F5306L exonic ENSMUSG00000048154 nonsynonymous SNV ENSMUST00000023741:c.C15918G:p.F5306L 15qF1 NA NA chr15 98669727 GGTxAAG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 129 2 0 84.171841 0.5 0.02 1.482389 29 29 888 878 60 60 0 0 GG 16.537287 55 0 1548 0 KEEP - Kmt2d NO UVC_2 chr15 98780507 98780507 A G exonic Tuba1a synonymous SNV NM_011653:c.T1314C:p.D438D exonic Tuba1a synonymous SNV uc007xok.1:c.T1314C:p.D438D exonic ENSMUSG00000072235 synonymous SNV ENSMUST00000097014:c.T1314C:p.D438D 15qF1 "Score=0.983344;Name=No.57823,chr15:98762012" NA chr15 98780507 AGAxTCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999622 0.999622 1 380 1 77 16.011644 0.094118 0.02 1.146771 77 8 2252 237 60 60 0 0 AA 68.241678 227 0 6154 0 KEEP - Tuba1a NO UVC_2 chr16 13836742 13836742 T C intronic Pdxdc1 NA NA intronic Pdxdc1 NA NA intronic ENSMUSG00000022680 NA NA 16qA1 NA NA chr16 13836742 TGGxAGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 82 2 0 24.875311 0.333333 0.02 -0.26301 20 10 570 284 60 60 0 0 TT 12.930253 43 0 1145 0 KEEP - Pdxdc1 NO UVC_2 chr16 16321717 16321717 T A exonic Dnm1l nonsynonymous SNV NM_001276341:c.A1205T:p.D402V exonic Dnm1l nonsynonymous SNV uc007yik.1:c.A1205T:p.D402V exonic ENSMUSG00000022789 nonsynonymous SNV ENSMUST00000023477:c.A1499T:p.D500V 16qA2 NA NA chr16 16321717 AAGxCGG T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 118 2 0 43.901575 0.421053 0.02 -0.333235 22 16 630 475 60 60 0 0 TT 17.139278 57 0 1545 0 KEEP - Dnm1l NO UVC_2 chr16 20372271 20372271 T C exonic Abcc5 nonsynonymous SNV NM_013790:c.A2401G:p.T801A exonic Abcc5 nonsynonymous SNV uc007ypp.1:c.A2401G:p.T801A exonic ENSMUSG00000022822 nonsynonymous SNV ENSMUST00000079158:c.A2401G:p.T801A 16qA3 NA NA chr16 20372271 CAGxAGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 315 0 0 112.719015 0.376147 0.02 3.116659 68 41 1944 1245 60 60 0 0 TT 48.920891 163 0 4287 0 KEEP - Abcc5 NO UVC_2 chr16 20630833 20630833 C T intronic Ece2 NA NA intronic Ece2 NA NA intronic ENSMUSG00000022842 NA NA 16qB1 NA NA chr16 20630833 TTGxGCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 185 0 0 91.138115 0.52459 0.02 1.357328 29 32 800 942 60 60 0 0 CC 26.443548 88 0 2301 0 KEEP + Ece2 YES UVC_2 chr16 20741675 20741675 G A intronic Chrd NA NA intronic Chrd NA NA intronic ENSMUSG00000006958 NA NA 16qB1 NA NA chr16 20741675 AGTxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 57 0 0 15.064682 0.272727 0.02 -0.192967 16 6 492 178 60 60 0 0 GG 9.625604 32 0 909 0 KEEP + Chrd YES UVC_2 chr16 21153534 21153534 G C exonic 2310042E22Rik nonsynonymous SNV NM_025634:c.C357G:p.S119R exonic 2310042E22Rik nonsynonymous SNV uc007yrf.2:c.C357G:p.S119R ncRNA_exonic ENSMUSG00000090356 NA NA 16qB1 "Score=0.949272;Name=No.61873,chr16:21053744" NA chr16 21153534 CTGxCTC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 80 0 30 30.267927 0.588235 0.02 -0.149107 7 10 207 305 36 60 0 0 GG 13.514106 45 0 1222 0 KEEP - 2310042E22Rik NO UVC_2 chr16 31948699 31948699 C T UTR5 Ncbp2 NA NA UTR5 Ncbp2 NA NA UTR5 ENSMUSG00000022774 NA NA 16qB2 NA NA chr16 31948699 CTCxCGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.227464 0.229173 0.99254 25 0 0 19.939191 0.466667 0.02 -0.131538 8 7 231 211 60 60 0 0 CC 2.707024 9 0 249 0 KEEP + Ncbp2 YES UVC_2 chr16 38573392 38573392 A T intronic Tmem39a NA NA intronic Tmem39a NA NA ncRNA_exonic ENSMUSG00000091238 NA NA 16qB4 NA NA chr16 38573392 GGTxAGT A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 77 0 0 23.01014 0.346154 0.02 -0.228028 17 9 505 260 60 60 0 0 AA 12.633114 42 0 1169 0 KEEP + Tmem39a NO UVC_2 chr16 38573394 38573394 G A intronic Tmem39a NA NA intronic Tmem39a NA NA ncRNA_exonic ENSMUSG00000091238 NA NA 16qB4 NA NA chr16 38573394 TAAxTCT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 75 0 0 22.710411 0.346154 0.02 -0.227969 17 9 480 257 60 60 0 0 GG 11.72935 39 0 1065 0 KEEP + Tmem39a YES UVC_2 chr16 44259675 44259675 G A exonic Sidt1 synonymous SNV NM_198034:c.C1728T:p.S576S exonic Sidt1 synonymous SNV uc007zhd.1:c.C1728T:p.S576S exonic ENSMUSG00000022696 synonymous SNV ENSMUST00000127567:c.C582T:p.S194S 16qB4 NA NA chr16 44259675 GAAxGAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 74 0 0 30.799406 0.44 0.02 -0.219272 14 11 424 330 60 60 0 0 GG 11.430769 38 0 1074 0 KEEP - Sidt1 YES UVC_2 chr16 5216957 5216957 G A intronic AU021092 NA NA intronic AU021092 NA NA intronic ENSMUSG00000051669 NA NA 16qA1 NA NA chr16 5216957 TGGxAGG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139529 0.139832 0.997832 28 0 0 10.391168 0.333333 0.02 -0.105251 8 4 243 118 60 60 0 0 GG 4.812712 16 0 448 0 KEEP - AU021092 YES UVC_2 chr16 72933524 72933524 G A exonic Robo1 nonsynonymous SNV NM_019413:c.G607A:p.G203S exonic Robo1 nonsynonymous SNV uc007zra.1:c.G607A:p.G203S exonic ENSMUSG00000022883 nonsynonymous SNV ENSMUST00000023600:c.G607A:p.G203S 16qC3.1 NA NA chr16 72933524 GTTxGCA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 41 1 0 19.723795 0.5 0.02 -0.122794 7 7 218 206 60 60 0 0 GG 6.918986 23 0 657 0 KEEP + Robo1 YES UVC_2 chr16 72933525 72933525 G A exonic Robo1 nonsynonymous SNV NM_019413:c.G608A:p.G203D exonic Robo1 nonsynonymous SNV uc007zra.1:c.G608A:p.G203D exonic ENSMUSG00000022883 nonsynonymous SNV ENSMUST00000023600:c.G608A:p.G203D 16qC3.1 NA NA chr16 72933525 TTGxCAC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.19629 0.196312 0.999892 41 1 0 19.524028 0.5 0.02 -0.122788 7 7 210 204 60 60 0 0 GG 6.855731 23 0 612 0 KEEP + Robo1 YES UVC_2 chr16 73904652 73904652 G C exonic Robo2 nonsynonymous SNV NM_175549:c.C4033G:p.H1345D exonic Robo2 nonsynonymous SNV uc007zrf.1:c.C1897G:p.H633D exonic ENSMUSG00000052516 nonsynonymous SNV ENSMUST00000117200:c.C3907G:p.H1303D 16qC3.1 NA NA chr16 73904652 GATxAGG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291981 0.292001 0.999931 53 0 0 15.968888 0.352941 0.02 -0.14911 11 6 340 179 60 60 0 0 GG 7.520607 25 0 714 0 KEEP - Robo2 NO UVC_2 chr16 76292956 76292956 T C exonic Nrip1 nonsynonymous SNV NM_173440:c.A1957G:p.K653E exonic Nrip1 nonsynonymous SNV uc007zrx.1:c.A1957G:p.K653E exonic ENSMUSG00000048490 nonsynonymous SNV ENSMUST00000054178:c.A1957G:p.K653E 16qC3.1 NA NA chr16 76292956 GTTxGCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 87 0 0 14.827142 0.166667 0.02 -0.368355 35 7 1055 197 60 60 0 0 TT 11.70358 39 0 1049 0 KEEP - Nrip1 NO UVC_2 chr16 87946966 87946966 C T exonic Grik1 synonymous SNV NM_010348:c.G1572A:p.E524E exonic Grik1 synonymous SNV uc007zur.2:c.G1572A:p.E524E exonic ENSMUSG00000022935 synonymous SNV ENSMUST00000023652:c.G1461A:p.E487E 16qC3.3 NA NA chr16 87946966 TTTxTCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522155 0.522161 0.999988 55 0 0 51.811415 0.708333 0.02 -0.210479 7 17 216 500 60 60 0 0 CC 8.121844 27 0 768 0 KEEP + Grik1 YES UVC_2 chr16 87996121 87996121 T C intronic Grik1 NA NA intronic Grik1 NA NA intronic ENSMUSG00000022935 NA NA 16qC3.3 NA NA chr16 87996121 GAGxGGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 52 0 0 17.117148 0.388889 0.02 -0.157744 11 7 304 190 60 60 0 0 TT 8.119877 27 0 728 0 KEEP - Grik1 NO UVC_2 chr16 90805798 90805798 A G intronic Urb1 NA NA intronic Urb1 NA NA intronic ENSMUSG00000039929 NA NA 16qC3.3 NA NA chr16 90805798 TTAxGAG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.024059 0.024074 0.999366 25 0 0 7.967574 0.6 0.02 -0.043841 2 3 62 80 60 60 0 0 AA 5.113662 17 0 478 0 KEEP - Urb1 NO UVC_2 chr16 91025875 91025875 A G exonic Paxbp1 nonsynonymous SNV NM_026110:c.T1795C:p.C599R exonic Gcfc1 nonsynonymous SNV uc012aih.1:c.T1795C:p.C599R exonic ENSMUSG00000022974 nonsynonymous SNV ENSMUST00000118522:c.T1795C:p.C599R 16qC3.3 NA NA chr16 91025875 TGCxGTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.290976 0.292001 0.99649 33 0 0 11.212516 0.294118 0.02 -0.14909 12 5 370 133 60 60 0 0 AA 4.511666 15 0 415 0 KEEP - Paxbp1 NO UVC_2 chr16 91659158 91659158 T C exonic Son nonsynonymous SNV NM_019973:c.T4547C:p.M1516T exonic Son nonsynonymous SNV uc012aii.1:c.T3977C:p.M1326T exonic ENSMUSG00000022961 nonsynonymous SNV ENSMUST00000114036:c.T4547C:p.M1516T 16qC3.3 NA NA chr16 91659158 GAAxGAA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457692 0.457757 0.99986 46 0 0 26.585666 0.454545 0.02 -0.192938 12 10 353 284 60 60 0 0 TT 5.713702 19 0 509 0 KEEP + Son NO UVC_2 chr16 92644406 92644406 C T exonic Runx1 synonymous SNV NM_001111023:c.G717A:p.Q239Q exonic Runx1 synonymous SNV uc007zzi.2:c.G717A:p.Q239Q exonic ENSMUSG00000022952 synonymous SNV ENSMUST00000168195:c.G717A:p.Q239Q 16qC4 NA NA chr16 92644406 CATxTGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999948 0.999948 1 237 2 0 134.856736 0.479592 0.02 1.131623 51 47 1511 1419 60 60 0 0 CC 31.265188 104 0 2928 0 KEEP - Runx1 YES UVC_2 chr16 93919842 93919842 C A exonic Cldn14 synonymous SNV NM_001165925:c.G360T:p.L120L exonic Cldn14 synonymous SNV uc012aiq.1:c.G360T:p.L120L exonic ENSMUSG00000047109 synonymous SNV ENSMUST00000169391:c.G360T:p.L120L 16qC4 NA NA chr16 93919842 CCCxAGC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552537 0.552887 0.999366 45 0 0 45.458113 0.625 0.02 -0.219274 9 15 271 452 60 60 0 0 CC 5.108926 17 0 461 0 KEEP - Cldn14 NO UVC_2 chr16 93919843 93919843 A G exonic Cldn14 nonsynonymous SNV NM_001165925:c.T359C:p.L120P exonic Cldn14 nonsynonymous SNV uc012aiq.1:c.T359C:p.L120P exonic ENSMUSG00000047109 nonsynonymous SNV ENSMUST00000169391:c.T359C:p.L120P 16qC4 NA NA chr16 93919843 CCCxGCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 46 0 0 44.055064 0.625 0.02 -0.219249 9 15 272 438 60 60 0 0 AA 5.413552 18 0 491 0 KEEP - Cldn14 NO UVC_2 chr16 97769060 97769060 T G exonic Mx2 synonymous SNV NM_013606:c.T825G:p.G275G ncRNA_exonic Mx2 NA NA exonic ENSMUSG00000023341 synonymous SNV ENSMUST00000024112:c.T825G:p.G275G 16qC4 "Score=0.939452;Name=No.61953,chr16:97675593" NA chr16 97769060 AGGxCAG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 109 0 0 62.38738 0.468085 0.02 -0.412223 25 22 747 660 60 60 0 0 TT 16.240079 54 0 1474 0 KEEP + Mx2 NO UVC_2 chr17 12344796 12344796 C G exonic Agpat4 synonymous SNV NM_026644:c.C159G:p.L53L exonic Agpat4 synonymous SNV uc008akm.1:c.C159G:p.L53L exonic ENSMUSG00000023827 synonymous SNV ENSMUST00000170858:c.C159G:p.L53L 17qA1 NA NA chr17 12344796 ACTxTGC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229141 0.229173 0.99986 34 0 0 37.66208 0.8 0.02 -0.131555 3 12 88 352 60 60 0 0 CC 4.267582 18 1 508 10 KEEP + Agpat4 NO UVC_2 chr17 12598041 12598041 T C exonic Plg nonsynonymous SNV NM_008877:c.T1591C:p.C531R exonic Plg nonsynonymous SNV uc008akt.2:c.T1591C:p.C531R exonic ENSMUSG00000059481 nonsynonymous SNV ENSMUST00000014578:c.T1591C:p.C531R 17qA1 NA NA chr17 12598041 TACxGCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 90 0 0 17.43786 0.333333 0.02 -0.208931 16 8 473 203 60 60 0 0 TT 15.620988 52 0 1408 0 KEEP + Plg NO UVC_2 chr17 19658905 19658905 C T exonic Vmn2r100 synonymous SNV NM_001104562:c.C576T:p.Y192Y exonic Vmn2r100 synonymous SNV uc009vbe.1:c.C576T:p.Y192Y exonic ENSMUSG00000091859 synonymous SNV ENSMUST00000166081:c.C576T:p.Y192Y 17qA3.2 NA NA chr17 19658905 CTAxCAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 314 0 0 163.181008 0.787879 0.02 1.313334 14 52 419 1532 60 60 0 0 CC 57.140993 190 0 5260 0 KEEP + Vmn2r100 YES UVC_2 chr17 20415390 20415390 C G exonic Vmn2r106 nonsynonymous SNV NM_001104568:c.G1222C:p.A408P exonic Vmn2r106 nonsynonymous SNV uc009vbk.1:c.G1222C:p.A408P exonic ENSMUSG00000091656 nonsynonymous SNV ENSMUST00000167464:c.G1222C:p.A408P 17qA3.2 NA NA chr17 20415390 GAGxCAG C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260933 0.260965 0.999879 42 0 0 7.279029 0.1875 0.02 -0.140335 13 3 389 92 60 60 0 0 CC 6.616527 22 0 601 0 KEEP - Vmn2r106 NO UVC_2 chr17 23496162 23496162 C T intronic Vmn2r115 NA NA intronic Vmn2r115 NA NA intronic ENSMUSG00000091076 NA NA 17qA3.3 "Score=0.924606;Name=No.65595,chr17:23572303" NA chr17 23496162 TTTxATT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 116 0 5 135.3053 0.823529 0.02 1.374695 9 42 275 1256 60 60 0 0 CC 15.643301 52 0 1494 0 KEEP + Vmn2r115 YES UVC_2 chr17 23496748 23496748 T A exonic Vmn2r115 nonsynonymous SNV NM_001104579:c.T2227A:p.S743T exonic Vmn2r115 nonsynonymous SNV uc009vbs.1:c.T2227A:p.S743T exonic ENSMUSG00000091076 nonsynonymous SNV ENSMUST00000168175:c.T2227A:p.S743T 17qA3.3 "Score=0.924606;Name=No.65595,chr17:23572303" NA chr17 23496748 GGTxCAG T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 418 3 10 23.999176 0.093525 0.02 4.174787 126 13 3749 365 60 60 0 0 TT 70.682505 235 0 6518 0 KEEP + Vmn2r115 NO UVC_2 chr17 23538324 23538324 G A exonic Vmn2r116 nonsynonymous SNV NM_001104580:c.G2064A:p.M688I exonic Vmn2r116 nonsynonymous SNV uc009vbt.1:c.G2064A:p.M688I exonic ENSMUSG00000090966 nonsynonymous SNV ENSMUST00000164856:c.G2064A:p.M688I 17qA3.3 "Score=0.944468;Name=No.65598,chr17:23591249" NA chr17 23538324 GATxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 458 0 0 49.646673 0.141975 0.02 4.159158 139 23 4261 674 60 60 0 0 GG 67.381169 224 0 6413 0 KEEP + Vmn2r116 YES UVC_2 chr17 24181271 24181271 A C exonic Prss27 nonsynonymous SNV NM_175440:c.A290C:p.K97T exonic Prss27 nonsynonymous SNV uc008aug.1:c.A290C:p.K97T exonic ENSMUSG00000050762 nonsynonymous SNV ENSMUST00000059482:c.A290C:p.K97T 17qA3.3 NA NA chr17 24181271 TGAxGCT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 162 0 0 183.213989 0.861111 0.02 1.162404 10 62 298 1663 60 60 0 0 AA 21.65603 72 0 1993 0 KEEP + Prss27 NO UVC_2 chr17 24642481 24642481 A C exonic Caskin1 synonymous SNV NM_027937:c.A3297C:p.R1099R exonic Caskin1 synonymous SNV uc008awo.1:c.A3084C:p.R1028R exonic ENSMUSG00000033597 synonymous SNV ENSMUST00000115347:c.A3084C:p.R1028R 17qA3.3 NA NA chr17 24642481 CCGxCAA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.640941 0.641347 0.999366 45 0 0 17.802857 0.25 0.02 -0.245581 21 7 623 213 60 60 0 0 AA 5.110168 17 0 446 0 KEEP + Caskin1 NO UVC_2 chr17 24839319 24839319 T C exonic Tbl3 nonsynonymous SNV NM_145396:c.A1442G:p.D481G exonic Tbl3 nonsynonymous SNV uc012amp.1:c.A1034G:p.D345G exonic ENSMUSG00000040688 nonsynonymous SNV ENSMUST00000126319:c.A1442G:p.D481G 17qA3.3 NA NA chr17 24839319 ATGxCCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 123 1 0 30.602025 0.324324 0.02 -0.324422 25 12 724 350 60 60 0 0 TT 21.352746 71 0 1929 0 KEEP - Tbl3 NO UVC_2 chr17 24856959 24856959 A C upstream "Rps2,Snhg9,Snora64,Snora78" NA NA upstream "Gm10653,Rps2,Snhg9,Snora64,Snora78" NA NA UTR5 ENSMUSG00000044533 NA NA 17qA3.3 NA NA chr17 24856959 AAGxCGC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 99 0 0 89.617122 0.870968 0.02 -0.289379 4 27 104 819 60 60 0 0 AA 15.654681 54 1 1407 5 KEEP NA Rps2 NO UVC_2 chr17 25513785 25513785 C T intronic Cacna1h NA NA intronic Cacna1h NA NA intronic ENSMUSG00000024112 NA NA 17qA3.3 NA NA chr17 25513785 TCCxCTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 50 0 0 71.344568 0.954545 0.02 -0.192945 1 21 30 631 60 60 0 0 CC 7.466616 25 0 644 0 KEEP - Cacna1h YES UVC_2 chr17 25513786 25513786 C T intronic Cacna1h NA NA intronic Cacna1h NA NA intronic ENSMUSG00000024112 NA NA 17qA3.3 NA NA chr17 25513786 CCCxTTA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457725 0.457757 0.999931 50 0 0 70.043532 0.954545 0.02 -0.192932 1 21 29 618 60 60 0 0 CC 7.507942 25 0 686 0 KEEP - Cacna1h YES UVC_2 chr17 25628395 25628395 G A exonic Sstr5 synonymous SNV NM_001191008:c.C804T:p.I268I exonic Sstr5 synonymous SNV uc012anh.1:c.C804T:p.I268I exonic ENSMUSG00000050824 synonymous SNV ENSMUST00000165183:c.C804T:p.I268I 17qA3.3 NA NA chr17 25628395 GACxATG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 100 0 0 15.743374 0.166667 0.02 -0.366488 35 7 865 206 60 60 0 0 GG 14.416971 48 0 1171 0 KEEP - Sstr5 YES UVC_2 chr17 28499302 28499302 C T intronic Tulp1 NA NA intronic Tulp1 NA NA intronic ENSMUSG00000037446 NA NA 17qA3.3 NA NA chr17 28499302 GCGxCCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 555 2 0 15.807703 0.059603 0.02 4.155825 142 9 4249 263 60 60 0 0 CC 97.148246 323 0 8908 0 KEEP - Tulp1 YES UVC_2 chr17 30921088 30921088 A C exonic Dnah8 nonsynonymous SNV NM_013811:c.A10815C:p.K3605N exonic Dnahc8 nonsynonymous SNV uc008bua.1:c.A10815C:p.K3605N exonic ENSMUSG00000033826 nonsynonymous SNV ENSMUST00000035963:c.A10815C:p.K3605N 17qA3.3 NA NA chr17 30921088 GAAxGTC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 102 0 0 27.070298 0.333333 0.02 -0.315691 24 12 730 313 60 60 0 0 AA 16.242979 54 0 1511 0 KEEP + Dnah8 NO UVC_2 chr17 30950053 30950053 T C exonic Dnah8 nonsynonymous SNV NM_013811:c.T12401C:p.V4134A exonic Dnahc8 nonsynonymous SNV uc008bua.1:c.T12401C:p.V4134A exonic ENSMUSG00000033826 nonsynonymous SNV ENSMUST00000035963:c.T12401C:p.V4134A 17qA3.3 NA NA chr17 30950053 CAGxTAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162364 0.162467 0.999366 30 0 0 13.42358 0.384615 0.02 -0.114018 8 5 237 148 60 60 0 0 TT 5.112614 17 0 461 0 KEEP + Dnah8 NO UVC_2 chr17 31046145 31046145 G T intronic Glp1r NA NA intronic Glp1r NA NA intronic ENSMUSG00000024027 NA NA 17qA3.3 NA NA chr17 31046145 TCAxAGG G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 356 1 0 60.741751 0.307692 0.02 1.109388 54 24 1657 702 60 60 0 0 GG 67.070728 223 0 6312 0 KEEP + Glp1r NO UVC_2 chr17 32335445 32335445 T C exonic Brd4 synonymous SNV NM_020508:c.A3747G:p.P1249P exonic Brd4 synonymous SNV uc008bwa.2:c.A3747G:p.P1249P exonic ENSMUSG00000024002 synonymous SNV ENSMUST00000003726:c.A3750G:p.P1250P 17qB1 NA NA chr17 32335445 GGAxGGG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 96 0 0 33.626636 0.388889 0.02 -0.315676 22 14 648 374 60 60 0 0 TT 14.733887 49 0 1303 0 KEEP - Brd4 NO UVC_2 chr17 32766854 32766854 T C exonic Gm9705 synonymous SNV NM_001100187:c.T750C:p.T250T exonic Gm9705 synonymous SNV uc008bxj.1:c.T750C:p.T250T exonic ENSMUSG00000062464 synonymous SNV ENSMUST00000077639:c.T750C:p.T250T 17qB1 "Score=0.936421;Name=No.65620,chr17:32672828" NA chr17 32766854 CACxGCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 270 1 4 9.556527 0.060606 0.02 0.925296 93 6 2796 165 60 60 0 0 TT 42.692511 142 0 3877 0 KEEP + Gm9705 NO UVC_2 chr17 33779132 33779132 T C exonic Pram1 synonymous SNV NM_001002842:c.T1581C:p.S527S exonic Pram1 synonymous SNV uc008byz.1:c.T1020C:p.S340S exonic ENSMUSG00000032739 synonymous SNV ENSMUST00000052079:c.T1581C:p.S527S 17qB1 NA NA chr17 33779132 TAGxATC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 176 2 0 35.706736 0.25 0.02 1.465228 45 15 1291 432 60 60 0 0 TT 27.059909 90 0 2391 0 KEEP + Pram1 NO UVC_2 chr17 34160239 34160239 C T exonic Ring1 nonsynonymous SNV NM_009066:c.G238A:p.G80R exonic Ring1 nonsynonymous SNV uc008cas.2:c.G238A:p.G80R exonic ENSMUSG00000024325 nonsynonymous SNV ENSMUST00000025183:c.G238A:p.G80R 17qB1 NA NA chr17 34160239 ACCxGCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999919 0.999919 1 187 0 0 69.564978 0.284211 0.02 1.158226 68 27 1830 813 60 60 0 0 CC 21.039959 70 0 1812 0 KEEP - Ring1 YES UVC_2 chr17 34948586 34948586 G C exonic C4a unknown UNKNOWN exonic C4a nonsynonymous SNV uc008cdm.2:c.C623G:p.A208G ncRNA_exonic ENSMUSG00000015451 NA NA 17qB1 "Score=0.953125;Name=No.65650,chr17:34847295" NA chr17 34948586 GTGxCTG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 180 0 0 70.563367 0.303371 0.02 1.102837 62 27 1823 814 60 60 0 0 GG 25.53177 85 0 2266 0 KEEP - C4a NO UVC_2 chr17 35989541 35989541 C T exonic Mdc1 nonsynonymous SNV NM_001010833:c.C3035T:p.S1012F exonic Mdc1 nonsynonymous SNV uc008cir.1:c.C3035T:p.S1012F exonic ENSMUSG00000061607 nonsynonymous SNV ENSMUST00000082337:c.C3035T:p.S1012F 17qB1 NA NA chr17 35989541 GGTxCTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 103 0 0 139.581861 0.865385 0.02 1.517895 7 45 209 1271 60 60 0 0 CC 11.960769 40 0 1064 0 KEEP + Mdc1 YES UVC_2 chr17 36254862 36254862 A T intronic H2-T10 NA NA intronic "H2-T10,H2-T22,H2-t9" NA NA intronic ENSMUSG00000079491 NA NA 17qB1 "Score=0.951462;Name=No.65666,chr17:36166595" NA chr17 36254862 TCAxAAC A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 305 0 7 19.11632 0.092593 0.02 2.44323 98 10 2927 288 60 60 0 0 AA 52.290523 174 0 4775 0 KEEP - H2-T10 NO UVC_2 chr17 36598992 36598992 T G intronic H2-M10.4 NA NA intronic H2-M10.4 NA NA intronic ENSMUSG00000048231 NA NA 17qB1 NA NA chr17 36598992 CCCxTCA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 136 0 0 117.559009 0.844444 0.02 -0.39459 7 38 212 1079 60 60 0 0 TT 23.156439 77 0 2122 0 KEEP - H2-M10.4 NO UVC_2 chr17 38219235 38219235 C A exonic Olfr131 nonsynonymous SNV NM_146867:c.G687T:p.K229N exonic Olfr131 nonsynonymous SNV uc008cnx.1:c.G687T:p.K229N exonic ENSMUSG00000043312 nonsynonymous SNV ENSMUST00000059560:c.G687T:p.K229N 17qB1 NA NA chr17 38219235 TATxTTT C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 132 0 0 40.78336 0.246377 0.02 1.287025 52 17 1577 494 60 60 0 0 CC 15.335933 51 0 1444 0 KEEP - Olfr131 NO UVC_2 chr17 45798529 45798529 G C intronic Tmem63b NA NA intronic Tmem63b NA NA intronic ENSMUSG00000036026 NA NA 17qB3 NA NA chr17 45798529 AGGxAGG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.290641 0.292001 0.995343 31 0 0 9.881029 0.235294 0.02 -0.14911 13 4 397 120 60 60 0 0 GG 4.201929 14 0 381 0 KEEP - Tmem63b NO UVC_2 chr17 45798533 45798533 G A intronic Tmem63b NA NA intronic Tmem63b NA NA intronic ENSMUSG00000036026 NA NA 17qB3 NA NA chr17 45798533 AGGxACA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.25975 0.260965 0.995343 31 0 0 10.20145 0.25 0.02 -0.140343 12 4 371 122 60 60 0 0 GG 4.211017 14 0 391 0 KEEP - Tmem63b YES UVC_2 chr17 45802202 45802202 A G exonic Tmem63b nonsynonymous SNV NM_198167:c.T1432C:p.F478L exonic Tmem63b nonsynonymous SNV uc012auh.1:c.T1432C:p.F478L exonic ENSMUSG00000036026 nonsynonymous SNV ENSMUST00000113523:c.T1432C:p.F478L 17qB3 NA NA chr17 45802202 AGAxCTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 141 0 0 8.784466 0.089286 0.02 1.302436 51 5 1490 137 60 60 0 0 AA 18.340321 61 0 1651 0 KEEP - Tmem63b NO UVC_2 chr17 46809387 46809387 G A exonic Rrp36 synonymous SNV NM_144857:c.C249T:p.V83V exonic Rrp36 synonymous SNV uc008ctv.1:c.C132T:p.V44V exonic ENSMUSG00000023971 synonymous SNV ENSMUST00000024766:c.C249T:p.V83V 17qC NA NA chr17 46809387 GGCxACC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 97 1 0 48.000635 0.375 0.02 -0.420816 30 18 800 532 60 60 0 0 GG 13.519446 45 0 1117 0 KEEP - Rrp36 YES UVC_2 chr17 53792442 53792442 G C exonic Kat2b synonymous SNV NM_001190846:c.G1218C:p.L406L exonic Kat2b synonymous SNV uc008czp.2:c.G1452C:p.L484L exonic ENSMUSG00000000708 synonymous SNV ENSMUST00000000724:c.G1452C:p.L484L 17qC NA NA chr17 53792442 CCTxAAC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 81 0 0 6.311396 0.09375 0.02 -0.30679 29 3 852 92 60 60 0 0 GG 11.732425 39 0 1119 0 KEEP + Kat2b NO UVC_2 chr17 54421095 54421095 A C exonic Slc5a7 nonsynonymous SNV NM_022025:c.T848G:p.V283G exonic Slc5a7 nonsynonymous SNV uc008czy.1:c.T848G:p.V283G exonic ENSMUSG00000023945 nonsynonymous SNV ENSMUST00000095712:c.T848G:p.V283G 17qC NA NA chr17 54421095 ATCxCCA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 50 3 0 50.326772 0.9375 0.02 -0.14033 1 15 31 448 60 60 0 0 AA 6.913827 23 0 597 0 KEEP - Slc5a7 NO UVC_2 chr17 56208389 56208389 A G exonic Ubxn6 synonymous SNV NM_024432:c.T1194C:p.C398C exonic Ubxn6 synonymous SNV uc008dat.1:c.T1194C:p.C398C exonic ENSMUSG00000019578 synonymous SNV ENSMUST00000019722:c.T1194C:p.C398C 17qD NA NA chr17 56208389 CCCxCAC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 66 0 0 12.247054 0.214286 0.02 -0.24555 22 6 654 157 60 60 0 0 AA 8.721467 29 0 785 0 KEEP + Ubxn6 NO UVC_2 chr17 56755461 56755461 A G exonic Lonp1 nonsynonymous SNV NM_028782:c.T1868C:p.L623P exonic Lonp1 nonsynonymous SNV uc008dco.1:c.T422C:p.L141P exonic ENSMUSG00000041168 nonsynonymous SNV ENSMUST00000047226:c.T1868C:p.L623P 17qD NA NA chr17 56755461 AATxGCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 236 2 0 56.376463 0.20339 0.02 2.947319 94 24 2779 708 60 60 0 0 AA 24.993173 91 1 2489 22 KEEP - Lonp1 NO UVC_2 chr17 56761933 56761933 T C exonic Lonp1 nonsynonymous SNV NM_028782:c.A526G:p.T176A exonic Lonp1 nonsynonymous SNV uc008dcp.1:c.A526G:p.T176A exonic ENSMUSG00000041168 nonsynonymous SNV ENSMUST00000047226:c.A526G:p.T176A 17qD NA NA chr17 56761933 CCGxATG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 206 0 0 63.733896 0.32 0.02 1.333316 51 24 1487 727 60 60 0 0 TT 32.474163 108 0 2869 0 KEEP - Lonp1 NO UVC_2 chr17 57394426 57394426 T C intronic Trip10 NA NA intronic Trip10 NA NA intronic ENSMUSG00000019487 NA NA 17qD NA NA chr17 57394426 CTCxCCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888837 0.888875 0.999957 74 0 0 30.961549 0.292683 0.02 -0.359616 29 12 885 360 60 60 0 0 TT 7.819761 26 0 718 0 KEEP + Trip10 NO UVC_2 chr17 57541385 57541385 C G exonic Emr1 nonsynonymous SNV NM_010130:c.C152G:p.T51S exonic Emr1 nonsynonymous SNV uc008det.2:c.C152G:p.T51S exonic ENSMUSG00000004730 nonsynonymous SNV ENSMUST00000004850:c.C152G:p.T51S 17qD NA NA chr17 57541385 ACAxCAC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 141 0 0 31.531814 0.254902 0.02 1.444928 38 13 1127 379 60 60 0 0 CC 20.751731 69 0 1912 0 KEEP + Emr1 NO UVC_2 chr17 71740786 71740786 C T exonic Smchd1 nonsynonymous SNV NM_028887:c.G3334A:p.D1112N exonic Smchd1 nonsynonymous SNV uc008dmh.1:c.G3334A:p.D1112N exonic ENSMUSG00000024054 nonsynonymous SNV ENSMUST00000024850:c.G1147A:p.D383N 17qE1.3 NA NA chr17 71740786 CATxAGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 86 2 0 10.525621 0.135135 0.02 -0.324538 32 5 992 145 60 60 0 0 CC 12.633672 42 0 1196 0 KEEP - Smchd1 YES UVC_2 chr17 74965346 74965346 T C exonic Birc6 nonsynonymous SNV NM_007566:c.T1259C:p.L420P exonic Birc6 nonsynonymous SNV uc008doe.1:c.T1175C:p.L392P exonic ENSMUSG00000024073 nonsynonymous SNV ENSMUST00000024879:c.T1175C:p.L392P 17qE2 NA NA chr17 74965346 AACxCAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 171 1 0 211.466844 0.822785 0.02 1.199278 14 65 426 1965 60 60 0 0 TT 22.558973 75 0 2095 0 KEEP + Birc6 NO UVC_2 chr17 75010752 75010752 A G exonic Birc6 nonsynonymous SNV NM_007566:c.A5678G:p.Y1893C exonic Birc6 nonsynonymous SNV uc012axh.1:c.A71G:p.Y24C exonic ENSMUSG00000024073 nonsynonymous SNV ENSMUST00000024879:c.A5594G:p.Y1865C 17qE2 NA NA chr17 75010752 ACTxCGG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 114 0 0 24.545515 0.232558 0.02 -0.377111 33 10 955 299 60 60 0 0 AA 15.600967 52 0 1355 0 KEEP + Birc6 NO UVC_2 chr17 79024047 79024047 C T intronic Vit NA NA intronic Vit NA NA intronic ENSMUSG00000024076 NA NA 17qE3 NA NA chr17 79024047 ATCxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 116 0 0 143.019947 0.69697 0.02 1.412546 20 46 591 1387 60 60 0 0 CC 11.130263 37 0 1052 0 KEEP + Vit YES UVC_2 chr17 83877130 83877130 G T exonic Eml4 nonsynonymous SNV NM_199466:c.G2254T:p.G752C exonic Eml4 nonsynonymous SNV uc008drx.2:c.G2254T:p.G752C exonic ENSMUSG00000032624 nonsynonymous SNV ENSMUST00000049503:c.G2254T:p.G752C 17qE4 NA NA chr17 83877130 ACTxGTG G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 128 4 0 33.13115 0.254902 0.02 1.44485 38 13 1155 395 60 60 0 0 GG 18.342221 61 0 1713 0 KEEP + Eml4 NO UVC_2 chr17 8534717 8534717 A G exonic Prr18 nonsynonymous SNV NM_178774:c.A839G:p.E280G exonic Prr18 nonsynonymous SNV uc008ajo.1:c.A815G:p.E272G exonic ENSMUSG00000055945 nonsynonymous SNV ENSMUST00000069742:c.A839G:p.E280G 17qA1 NA NA chr17 8534717 CCGxGTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899312 0.899314 0.999997 93 0 0 16.005077 0.170732 0.02 -0.36838 34 7 1039 208 60 60 0 1 AA 9.612545 32 0 859 0 KEEP + Prr18 NO UVC_2 chr18 12347665 12347665 C T intronic 3110002H16Rik NA NA intronic 3110002H16Rik NA NA intronic ENSMUSG00000024410 NA NA 18qA1 NA NA chr18 12347665 CTTxCAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 134 0 0 100.229915 0.486111 0.02 1.260679 37 35 1136 1052 60 60 0 0 CC 16.497731 55 0 1529 0 KEEP + 3110002H16Rik YES UVC_2 chr18 12726141 12726141 A C intronic Lama3 NA NA intronic Lama3 NA NA intronic ENSMUSG00000024421 NA NA 18qA1 NA NA chr18 12726141 CCAxCTG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.32057 0.322807 0.993072 32 0 0 15.687034 0.333333 0.02 -0.157866 12 6 354 178 60 60 0 0 AA 3.308624 11 0 305 0 KEEP + Lama3 NO UVC_2 chr18 24049419 24049419 A T exonic Mapre2 nonsynonymous SNV NM_153058:c.A968T:p.Q323L exonic Mapre2 nonsynonymous SNV uc008egf.2:c.A968T:p.Q323L exonic ENSMUSG00000024277 nonsynonymous SNV ENSMUST00000025127:c.A968T:p.Q323L 18qA2 NA NA chr18 24049419 AGCxGGA A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 73 2 0 11.517493 0.166667 0.02 -0.263139 25 5 768 150 60 60 0 0 AA 11.125866 37 0 1010 0 KEEP + Mapre2 NO UVC_2 chr18 34477375 34477375 T C exonic Apc nonsynonymous SNV NM_007462:c.T7669C:p.S2557P exonic Apc nonsynonymous SNV uc008eke.2:c.T7669C:p.S2557P exonic ENSMUSG00000005871 nonsynonymous SNV ENSMUST00000079362:c.T7669C:p.S2557P 18qB1 NA NA chr18 34477375 TCGxCCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 76 0 0 30.737093 0.272727 0.02 -0.385518 32 12 904 362 60 60 0 0 TT 8.720815 29 0 786 0 KEEP + Apc NO UVC_2 chr18 34595033 34595033 A C intronic Pkd2l2 NA NA intronic Pkd2l2 NA NA intronic ENSMUSG00000014503 NA NA 18qB1 NA NA chr18 34595033 TTAxTTC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668515 0.668523 0.999988 65 0 0 11.600775 0.172414 0.02 -0.254092 24 5 684 150 60 60 0 0 AA 8.116357 27 0 716 0 KEEP + Pkd2l2 NO UVC_2 chr18 34811316 34811316 C G exonic Cdc23 nonsynonymous SNV NM_178347:c.G46C:p.A16P exonic Cdc23 nonsynonymous SNV uc008elb.1:c.G46C:p.A16P exonic ENSMUSG00000024370 nonsynonymous SNV ENSMUST00000025228:c.G46C:p.A16P 18qB1 NA NA chr18 34811316 CCGxCGT C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 221 2 0 147.065125 0.541667 0.02 1.051129 44 52 1200 1510 60 60 2 0 CC 27.362796 91 0 2483 0 KEEP - Cdc23 NO UVC_2 chr18 35374245 35374245 A G splicing Lrrtm2(NM_178005:exon2:c.4+2T>C) NA NA splicing Lrrtm2(uc008ema.1:exon2:c.4+2T>C) NA NA splicing ENSMUSG00000071862(ENSMUST00000091636:exon2:c.4+2T>C) NA NA 18qB1 NA NA chr18 35374245 CTTxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 126 4 0 11.086894 0.121951 0.02 -0.377118 36 5 1049 153 60 60 0 0 AA 16.537322 55 0 1478 0 KEEP + Lrrtm2 NO UVC_2 chr18 35953204 35953204 A G intronic Ube2d2a NA NA intronic Ube2d2 NA NA intronic ENSMUSG00000091896 NA NA 18qB2 NA NA chr18 35953204 TGAxGAG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 68 0 0 18.301844 0.304348 0.02 -0.201741 16 7 494 211 60 60 0 0 AA 9.625708 32 0 900 0 KEEP + Ube2d2a NO UVC_2 chr18 36447323 36447323 C T exonic Pura nonsynonymous SNV NM_008989:c.C508T:p.R170C exonic Pura nonsynonymous SNV uc008enh.2:c.C508T:p.R170C exonic ENSMUSG00000043991 nonsynonymous SNV ENSMUST00000051301:c.C508T:p.R170C 18qB2 NA NA chr18 36447323 ATCxGCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.691234 0.693668 0.99649 46 0 0 33.358844 0.4 0.02 -0.26305 18 12 508 364 60 60 0 0 CC 4.507722 15 0 384 0 KEEP + Pura YES UVC_2 chr18 36784840 36784840 C T exonic Ankhd1 synonymous SNV NM_175375:c.C2932T:p.L978L exonic Ankhd1 synonymous SNV uc008env.2:c.C2932T:p.L978L exonic ENSMUSG00000024483 synonymous SNV ENSMUST00000006205:c.C2932T:p.L978L 18qB2 NA NA chr18 36784840 GGGxTAT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 109 2 0 31.144194 0.236364 0.02 1.40988 42 13 1223 380 60 60 0 0 CC 13.225371 44 0 1215 0 KEEP + Ankhd1 YES UVC_2 chr18 36846338 36846338 C A intronic E230025N22Rik NA NA intronic E230025N22Rik NA NA intronic ENSMUSG00000044719 NA NA 18qB2 NA NA chr18 36846338 CTCxTCA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 108 2 0 64.842421 0.594595 0.02 -0.333293 15 22 458 652 60 60 0 0 CC 15.642006 52 0 1467 0 KEEP - E230025N22Rik NO UVC_2 chr18 36899001 36899001 C T intronic Tmco6 NA NA exonic Tmco6 nonsynonymous SNV uc008eoh.1:c.C883T:p.H295Y intronic ENSMUSG00000006850 NA NA 18qB2 NA NA chr18 36899001 ATCxATT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 135 0 0 94.704351 0.52381 0.02 1.339611 30 33 916 979 60 60 0 0 CC 16.245364 54 0 1559 0 KEEP + Tmco6 YES UVC_2 chr18 36915391 36915391 T C exonic Ik nonsynonymous SNV NM_011879:c.T1396C:p.Y466H exonic Ik nonsynonymous SNV uc008eok.2:c.T1393C:p.Y465H exonic ENSMUSG00000024474 nonsynonymous SNV ENSMUST00000007042:c.T1396C:p.Y466H 18qB2 NA NA chr18 36915391 GATxATA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 200 0 0 31.943631 0.159091 0.02 1.219421 74 14 2146 420 60 60 0 0 TT 24.63307 82 0 2205 0 KEEP + Ik NO UVC_2 chr18 37460831 37460831 A C exonic Pcdhb3 nonsynonymous SNV NM_053128:c.A195C:p.Q65H exonic Pcdhb3 nonsynonymous SNV uc008epo.1:c.A195C:p.Q65H exonic ENSMUSG00000045498 nonsynonymous SNV ENSMUST00000051754:c.A195C:p.Q65H 18qB3 NA NA chr18 37460831 TCAxGCT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 90 0 0 12.386975 0.142857 0.02 -0.368383 36 6 1103 170 60 60 0 0 AA 12.023775 40 0 1092 0 KEEP + Pcdhb3 NO UVC_2 chr18 37516267 37516267 C T exonic Pcdhb8 nonsynonymous SNV NM_053133:c.C1343T:p.P448L exonic Pcdhb8 nonsynonymous SNV uc008ept.1:c.C1343T:p.P448L exonic ENSMUSG00000045876 nonsynonymous SNV ENSMUST00000051163:c.C1343T:p.P448L 18qB3 NA NA chr18 37516267 CTCxTGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 450 1 0 281.311693 0.545455 0.02 4.231996 80 96 2379 2882 60 60 0 0 CC 67.356628 224 0 6289 0 KEEP + Pcdhb8 YES UVC_2 chr18 37641783 37641783 C T UTR3 Pcdhb16 NA NA UTR3 Pcdhb16 NA NA UTR3 ENSMUSG00000047910 NA NA 18qB3 NA NA chr18 37641783 ATTxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 62 0 0 40.24889 0.5 0.02 -0.245585 14 14 426 420 60 60 0 0 CC 8.414064 28 0 791 0 KEEP + Pcdhb16 YES UVC_2 chr18 37908080 37908080 A G exonic Pcdhga10 synonymous SNV NM_033593:c.A1239G:p.V413V exonic Pcdhga10 synonymous SNV uc008eqz.1:c.A1239G:p.V413V ncRNA_exonic ENSMUSG00000085906 NA NA 18qB3 NA NA chr18 37908080 GGTxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 216 0 0 30.245296 0.138614 0.02 2.998215 87 14 2419 412 60 60 0 0 AA 30.30686 101 0 2638 0 KEEP + Pcdhga10 NO UVC_2 chr18 37923159 37923159 C T exonic Pcdhgb8 unknown UNKNOWN exonic Pcdhgb8 nonsynonymous SNV uc008erc.2:c.C1627T:p.L543F ncRNA_intronic ENSMUSG00000085906 NA NA 18qB3 NA NA chr18 37923159 TCGxTCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693593 0.693668 0.999892 56 0 0 59.641 0.666667 0.02 -0.263095 10 20 300 584 60 60 0 0 CC 6.917149 23 0 637 0 KEEP + Pcdhgb8 YES UVC_2 chr18 46767456 46767456 T C exonic Eif1a nonsynonymous SNV NM_010120:c.T103C:p.Y35H exonic Eif1a nonsynonymous SNV uc008evs.2:c.T103C:p.Y35H exonic ENSMUSG00000057561 nonsynonymous SNV ENSMUST00000078079:c.T103C:p.Y35H 18qC NA NA chr18 46767456 GAGxATG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 399 2 0 31.256151 0.103896 0.02 4.128906 138 16 3895 459 60 60 0 0 TT 55.768363 189 1 4878 9 KEEP + Eif1a NO UVC_2 chr18 50051203 50051203 T C exonic Dmxl1 synonymous SNV NM_001081371:c.T5289C:p.N1763N exonic Dmxl1 synonymous SNV uc008ewn.1:c.T5289C:p.N1763N exonic ENSMUSG00000037416 synonymous SNV ENSMUST00000041772:c.T5289C:p.N1763N 18qD1 NA NA chr18 50051203 AAAxGCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 184 2 0 20.415985 0.144737 0.02 1.127023 65 11 1935 288 60 60 0 0 TT 24.950241 83 0 2243 0 KEEP + Dmxl1 NO UVC_2 chr18 5063495 5063495 C T exonic Svil stopgain SNV NM_153153:c.C2767T:p.Q923X exonic Svil stopgain SNV uc012aza.1:c.C1555T:p.Q519X exonic ENSMUSG00000024236 stopgain SNV ENSMUST00000127297:c.C2425T:p.Q809X 18qA1 NA NA chr18 5063495 GTTxAAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760885 0.760887 0.999997 70 0 0 34.991838 0.393939 0.02 -0.289442 20 13 614 384 60 60 0 0 CC 9.626323 32 0 919 0 KEEP + Svil YES UVC_2 chr18 52650119 52650119 C T exonic Srfbp1 nonsynonymous SNV NM_026040:c.C1163T:p.P388L exonic Srfbp1 nonsynonymous SNV uc008exd.1:c.C1163T:p.P388L exonic ENSMUSG00000024528 nonsynonymous SNV ENSMUST00000025406:c.C1163T:p.P388L 18qD1 NA NA chr18 52650119 CCCxAGT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899311 0.899314 0.999997 84 1 0 11.031022 0.119048 0.02 -0.368379 37 5 1114 153 60 60 0 0 CC 8.723478 29 0 825 0 KEEP + Srfbp1 YES UVC_2 chr18 52689013 52689013 G T UTR5 Lox NA NA ncRNA_UTR5 Lox NA NA UTR5 ENSMUSG00000024529 NA NA 18qD1 NA NA chr18 52689013 GGAxGAC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926509 0.92664 0.999859 68 0 0 18.27535 0.177778 0.02 -0.394581 37 8 1071 236 60 60 0 0 GG 5.412532 18 0 489 0 KEEP - Lox NO UVC_2 chr18 56656931 56656931 C G intronic Gramd3 NA NA intronic Gramd3 NA NA intronic ENSMUSG00000001700 NA NA 18qD3 NA NA chr18 56656931 TAAxCCA C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.737075 0.739671 0.99649 51 0 0 50.303345 0.53125 0.02 -0.280669 15 17 442 518 60 60 0 0 CC 4.509783 15 0 397 0 KEEP + Gramd3 NO UVC_2 chr18 63187484 63187484 A G intronic Piezo2 NA NA intronic Fam38b NA NA intronic ENSMUSG00000041482 NA NA 18qE1 NA NA chr18 63187484 CCAxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941627 0.941741 0.999879 76 0 0 15.553894 0.148936 0.02 -0.412192 40 7 1168 208 60 60 0 0 AA 6.617233 22 0 611 0 KEEP - Piezo2 NO UVC_2 chr18 66156306 66156306 A G intronic Lman1 NA NA intronic Lman1 NA NA intronic ENSMUSG00000041891 NA NA 18qE1 NA NA chr18 66156306 TAGxTCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 72 0 0 14.455048 0.222222 0.02 -0.236653 21 6 608 178 60 60 1 0 AA 9.818766 33 0 773 0 KEEP - Lman1 NO UVC_2 chr18 69835321 69835321 A G intronic Tcf4 NA NA intronic Tcf4 NA NA intronic ENSMUSG00000053477 NA NA 18qE2 NA NA chr18 69835321 CACxCTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693593 0.693668 0.999892 61 0 0 11.447109 0.2 0.02 -0.263062 24 6 706 151 60 60 0 0 AA 6.917374 23 0 629 0 KEEP + Tcf4 NO UVC_2 chr18 71606097 71606097 C T exonic Dcc synonymous SNV NM_007831:c.G2058A:p.L686L exonic Dcc synonymous SNV uc008fop.1:c.G2058A:p.L686L exonic ENSMUSG00000060534 synonymous SNV ENSMUST00000073379:c.G2058A:p.L686L 18qE2 NA NA chr18 71606097 CTCxAAT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043692 0.043787 0.997832 27 0 0 11.731466 0.571429 0.02 -0.061398 3 4 93 119 60 60 0 0 CC 4.812727 16 0 456 0 KEEP - Dcc YES UVC_2 chr18 74729461 74729461 G A exonic Myo5b nonsynonymous SNV NM_201600:c.G68A:p.R23H exonic Myo5b nonsynonymous SNV uc008fpo.1:c.G68A:p.R23H exonic ENSMUSG00000025885 nonsynonymous SNV ENSMUST00000074157:c.G68A:p.R23H 18qE2 NA NA chr18 74729461 GGCxCTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959856 0.959859 0.999997 93 0 0 20.166424 0.18 0.02 -0.438225 41 9 1103 261 60 60 0 0 GG 9.016728 30 0 767 0 KEEP + Myo5b YES UVC_2 chr18 75160778 75160778 T G intronic Rpl17 NA NA intronic Rpl17 NA NA intronic ENSMUSG00000062328 NA NA 18qE3 NA NA chr18 75160778 AGCxGTT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 411 5 0 103.201543 0.263736 0.02 3.973184 134 48 4078 1259 70 60 0 0 TT 50.530865 168 0 4664 0 KEEP + Rpl17 NO UVC_2 chr18 77097948 77097948 T C exonic Skor2 nonsynonymous SNV NM_001109743:c.T625C:p.W209R exonic Skor2 nonsynonymous SNV uc008fqq.1:c.T625C:p.W209R exonic ENSMUSG00000091519 nonsynonymous SNV ENSMUST00000166956:c.T625C:p.W209R 18qE3 NA NA chr18 77097948 TCCxGGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 170 0 0 85.166772 0.466667 0.02 1.333543 40 35 1205 910 60 60 0 0 TT 22.225379 74 0 1998 0 KEEP + Skor2 NO UVC_2 chr18 82770598 82770598 G A intronic Zfp236 NA NA intronic Zfp236 NA NA intronic ENSMUSG00000041258 NA NA 18qE3 NA NA chr18 82770598 ACTxCCC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693573 0.693668 0.999863 59 0 0 16.463244 0.233333 0.02 -0.263108 23 7 694 202 60 60 0 0 GG 6.016715 20 0 575 0 KEEP - Zfp236 YES UVC_2 chr19 10787156 10787156 C T exonic Vps37c nonsynonymous SNV NM_181403:c.C491T:p.P164L exonic Vps37c nonsynonymous SNV uc008gqr.1:c.C167T:p.P56L exonic ENSMUSG00000048832 nonsynonymous SNV ENSMUST00000087951:c.C491T:p.P164L 19qA NA NA chr19 10787156 TGCxGGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851925 0.851984 0.999931 66 0 0 31.135824 0.315789 0.02 -0.333174 26 12 722 357 60 60 0 0 CC 7.212124 24 0 603 0 KEEP + Vps37c YES UVC_2 chr19 11407699 11407699 C T exonic Ms4a7 nonsynonymous SNV NM_001025610:c.G145A:p.G49R exonic Ms4a7 nonsynonymous SNV uc008grz.1:c.G145A:p.G49R exonic ENSMUSG00000024672 nonsynonymous SNV ENSMUST00000025574:c.G244A:p.G82R 19qA NA NA chr19 11407699 CTCxAAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 129 0 0 44.774816 0.293103 0.02 1.581512 41 17 1257 519 60 60 0 0 CC 13.536996 45 0 1283 0 KEEP - Ms4a7 YES UVC_2 chr19 12699190 12699190 T C exonic Gm4952 synonymous SNV NM_001013762:c.T471C:p.S157S exonic Gm4952 synonymous SNV uc008gug.2:c.T471C:p.S157S exonic ENSMUSG00000071633 synonymous SNV ENSMUST00000092931:c.T471C:p.S157S 19qA NA NA chr19 12699190 ATCxGGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 207 2 0 93.210279 0.521739 0.02 1.278403 33 36 999 968 60 60 0 0 TT 30.979028 103 0 2845 0 KEEP + Gm4952 NO UVC_2 chr19 12959199 12959199 A C exonic Olfr1445 nonsynonymous SNV NM_146699:c.A827C:p.Y276S exonic Olfr1445 nonsynonymous SNV uc008gus.1:c.A827C:p.Y276S exonic ENSMUSG00000045126 nonsynonymous SNV ENSMUST00000049624:c.A827C:p.Y276S 19qA "Score=0.93125;Name=No.72624,chr19:12993889" NA chr19 12959199 TCTxTAC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 95 0 0 40.579805 0.348837 0.02 -0.37713 28 15 813 455 60 60 0 0 AA 14.133856 47 0 1257 0 KEEP + Olfr1445 NO UVC_2 chr19 16239292 16239292 C T ncRNA_exonic E030024N20Rik NA NA ncRNA_exonic E030024N20Rik NA NA ncRNA_exonic ENSMUSG00000057990 NA NA 19qA NA NA chr19 16239292 TGAxCAT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 142 0 0 55.974347 0.354839 0.02 1.348682 40 22 1195 630 60 60 0 0 CC 21.01976 70 0 1921 0 KEEP + E030024N20Rik YES UVC_2 chr19 25243983 25243983 C T exonic Dock8 synonymous SNV NM_028785:c.C4335T:p.I1445I exonic Dock8 synonymous SNV uc008hba.1:c.C4335T:p.I1445I exonic ENSMUSG00000052085 synonymous SNV ENSMUST00000025831:c.C4335T:p.I1445I 19qB NA NA chr19 25243983 CATxATC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 66 0 0 33.122881 0.5 0.02 -0.227443 13 13 384 348 60 60 0 0 CC 9.927557 33 0 951 0 KEEP + Dock8 YES UVC_2 chr19 29078283 29078283 C T intronic Cdc37l1 NA NA exonic Gm10136 nonsynonymous SNV uc012bkg.1:c.G50A:p.R17Q exonic ENSMUSG00000063754 nonsynonymous SNV ENSMUST00000075049:c.G50A:p.R17Q 19qC1 NA NA chr19 29078283 TGCxGTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 129 0 13 30.135549 0.255319 0.02 -0.411964 35 12 886 360 60 60 0 0 CC 20.358318 68 0 1600 0 KEEP - Cdc37l1 YES UVC_2 chr19 30161851 30161851 A C intronic Uhrf2 NA NA intronic Uhrf2 NA NA intronic ENSMUSG00000024817 NA NA 19qC1 NA NA chr19 30161851 TGTxCAA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138793 0.139832 0.99257 21 0 0 8.880072 0.333333 0.02 -0.104991 8 4 230 103 60 60 0 0 AA 2.405681 8 0 213 0 KEEP + Uhrf2 NO UVC_2 chr19 34159258 34159258 C T exonic Lipn synonymous SNV NM_027340:c.C1122T:p.N374N exonic Lipn synonymous SNV uc008hfz.1:c.C1122T:p.N374N exonic ENSMUSG00000024770 synonymous SNV ENSMUST00000025682:c.C1122T:p.N374N 19qC1 NA NA chr19 34159258 GAAxCAT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 62 0 0 37.412734 0.666667 0.02 -0.183684 7 14 210 366 60 60 0 0 CC 11.73061 39 0 1085 0 KEEP + Lipn YES UVC_2 chr19 38358578 38358578 C T intronic Lgi1 NA NA intronic Lgi1 NA NA intronic ENSMUSG00000067242 NA NA 19qC3 NA NA chr19 38358578 GTTxTCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 139 0 0 99.705202 0.53125 0.02 1.330831 30 34 913 1027 60 60 0 0 CC 19.55413 65 0 1866 0 KEEP + Lgi1 YES UVC_2 chr19 38878975 38878975 T C exonic Noc3l nonsynonymous SNV NM_021315:c.A1300G:p.K434E exonic Noc3l nonsynonymous SNV uc008hjr.2:c.A1300G:p.K434E exonic ENSMUSG00000024999 nonsynonymous SNV ENSMUST00000025963:c.A1300G:p.K434E 19qC3 NA NA chr19 38878975 TTTxCAC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 148 0 0 15.450001 0.109375 0.02 1.330829 57 7 1722 217 60 60 0 0 TT 20.453511 68 0 1895 0 KEEP - Noc3l NO UVC_2 chr19 38878977 38878977 A C exonic Noc3l nonsynonymous SNV NM_021315:c.T1298G:p.V433G exonic Noc3l nonsynonymous SNV uc008hjr.2:c.T1298G:p.V433G exonic ENSMUSG00000024999 nonsynonymous SNV ENSMUST00000025963:c.T1298G:p.V433G 19qC3 NA NA chr19 38878977 TTCxCTT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 150 0 0 15.101458 0.111111 0.02 1.339643 56 7 1653 213 60 60 0 0 AA 20.744167 69 0 1848 0 KEEP - Noc3l NO UVC_2 chr19 38882049 38882049 C A exonic Noc3l synonymous SNV NM_021315:c.G1092T:p.L364L exonic Noc3l synonymous SNV uc008hjr.2:c.G1092T:p.L364L exonic ENSMUSG00000024999 synonymous SNV ENSMUST00000025963:c.G1092T:p.L364L 19qC3 NA NA chr19 38882049 AATxAGT C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 132 0 0 37.225159 0.267857 0.02 1.401005 41 15 1253 442 60 60 0 0 CC 18.349541 61 0 1745 0 KEEP - Noc3l NO UVC_2 chr19 38884817 38884817 G A exonic Noc3l nonsynonymous SNV NM_021315:c.C826T:p.P276S exonic Noc3l nonsynonymous SNV uc008hjr.2:c.C826T:p.P276S exonic ENSMUSG00000024999 nonsynonymous SNV ENSMUST00000025963:c.C826T:p.P276S 19qC3 NA NA chr19 38884817 GAGxCCG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522125 0.522161 0.999931 56 2 0 6.71601 0.125 0.02 -0.20909 21 3 601 92 60 60 0 0 GG 7.518578 25 0 686 0 KEEP - Noc3l YES UVC_2 chr19 4108694 4108694 C T exonic Pitpnm1 nonsynonymous SNV NM_008851:c.C1970T:p.S657F exonic Pitpnm1 nonsynonymous SNV uc008fyo.2:c.C1970T:p.S657F exonic ENSMUSG00000024851 nonsynonymous SNV ENSMUST00000100022:c.C1970T:p.S657F 19qA NA NA chr19 4108694 CCTxTGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996233 0.996233 1 163 0 0 79.245036 0.42029 0.02 1.287037 40 29 1180 858 60 60 0 0 CC 22.532504 75 0 2073 0 KEEP + Pitpnm1 YES UVC_2 chr19 4142789 4142789 C G exonic Gpr152 nonsynonymous SNV NM_206973:c.C328G:p.L110V exonic Gpr152 nonsynonymous SNV uc008fyx.1:c.C328G:p.L110V exonic ENSMUSG00000044724 nonsynonymous SNV ENSMUST00000096338:c.C328G:p.L110V 19qA NA NA chr19 4142789 TTCxTGT C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 266 0 0 71.102536 0.323232 0.02 0.925421 67 32 2022 829 60 60 0 0 CC 40.006733 133 0 3740 0 KEEP + Gpr152 NO UVC_2 chr19 41941202 41941202 A G exonic Rrp12 nonsynonymous SNV NM_199447:c.T3625C:p.Y1209H exonic Rrp12 nonsynonymous SNV uc008hmk.1:c.T3625C:p.Y1209H exonic ENSMUSG00000035049 nonsynonymous SNV ENSMUST00000038677:c.T3625C:p.Y1209H 19qC3 NA NA chr19 41941202 GGTxCCG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 91 0 0 19.150087 0.228571 0.02 -0.306822 27 8 765 235 60 60 0 0 AA 11.124263 37 0 969 0 KEEP - Rrp12 NO UVC_2 chr19 42676708 42676708 A G exonic Loxl4 nonsynonymous SNV NM_001164311:c.T1552C:p.S518P exonic Loxl4 nonsynonymous SNV uc008hns.2:c.T1549C:p.S517P exonic ENSMUSG00000025185 nonsynonymous SNV ENSMUST00000171432:c.T1549C:p.S517P 19qC3 NA NA chr19 42676708 GGGxACA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 173 0 0 75.844476 0.397059 0.02 1.379889 41 27 1218 828 60 60 0 0 AA 23.159735 77 0 2133 0 KEEP - Loxl4 NO UVC_2 chr19 4281117 4281117 C T intronic Ankrd13d NA NA intronic Ankrd13d NA NA intronic ENSMUSG00000005986 NA NA 19qA NA NA chr19 4281117 CCCxAAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 177 0 0 50.264367 0.322034 0.02 1.374705 40 19 1200 573 60 60 0 0 CC 28.813706 96 0 2687 0 KEEP - Ankrd13d YES UVC_2 chr19 4365840 4365840 T C intronic Kdm2a NA NA intronic Kdm2a NA NA intronic ENSMUSG00000054611 NA NA 19qA NA NA chr19 4365840 TCAxTTA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 262 0 0 60.181395 0.291139 0.02 1.199285 56 23 1667 699 60 60 0 0 TT 45.416962 151 0 4180 0 KEEP - Kdm2a NO UVC_2 chr19 43897634 43897634 C T exonic Abcc2 nonsynonymous SNV NM_013806:c.C3047T:p.S1016F exonic Abcc2 nonsynonymous SNV uc008how.1:c.C3047T:p.S1016F exonic ENSMUSG00000025194 nonsynonymous SNV ENSMUST00000026208:c.C3047T:p.S1016F 19qC3 NA NA chr19 43897634 CTTxTCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 55 0 0 25.117381 0.45 0.02 -0.175378 11 9 327 268 60 60 0 0 CC 7.307861 27 1 770 7 KEEP + Abcc2 YES UVC_2 chr19 46334139 46334139 C T exonic Gbf1 synonymous SNV NM_178930:c.C864T:p.P288P exonic Gbf1 synonymous SNV uc008hsq.1:c.C540T:p.P180P exonic ENSMUSG00000025224 synonymous SNV ENSMUST00000026254:c.C864T:p.P288P 19qC3 NA NA chr19 46334139 TCCxTGT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291988 0.292001 0.999957 48 0 0 16.569333 0.352941 0.02 -0.149109 11 6 331 185 60 60 0 0 CC 7.818918 26 0 722 0 KEEP + Gbf1 YES UVC_2 chr19 46728971 46728971 A G exonic Wbp1l nonsynonymous SNV NM_001177813:c.A809G:p.D270G exonic "D19Wsu162e,Opal1" nonsynonymous SNV uc008htw.2:c.A872G:p.D291G exonic ENSMUSG00000047731 nonsynonymous SNV ENSMUST00000059990:c.A803G:p.D268G 19qC3 NA NA chr19 46728971 ACGxTGA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 168 1 0 35.461969 0.211268 0.02 1.467555 56 15 1647 442 60 60 0 0 AA 22.982569 81 1 2191 12 KEEP + Wbp1l NO UVC_2 chr19 55265975 55265975 C T exonic Tectb synonymous SNV NM_009348:c.C732T:p.F244F exonic Tectb synonymous SNV uc008hxm.1:c.C732T:p.F244F exonic ENSMUSG00000024979 synonymous SNV ENSMUST00000025936:c.C732T:p.F244F 19qD2 NA NA chr19 55265975 TTTxCAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 170 4 0 50.234289 0.327586 0.02 1.383459 39 19 1190 571 60 60 0 0 CC 24.658183 82 0 2299 0 KEEP + Tectb YES UVC_2 chr19 55892260 55892260 C T exonic Tcf7l2 stopgain SNV NM_001142918:c.C388T:p.Q130X exonic Tcf7l2 stopgain SNV uc008hya.2:c.C388T:p.Q130X exonic ENSMUSG00000024985 stopgain SNV ENSMUST00000041717:c.C388T:p.Q130X 19qD2 NA NA chr19 55892260 CTTxAGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 84 0 0 50.392889 0.566667 0.02 -0.263138 13 17 405 512 60 60 0 0 CC 12.930017 43 0 1221 0 KEEP + Tcf7l2 YES UVC_2 chr19 5695217 5695217 A G exonic Map3k11 nonsynonymous SNV NM_022012:c.A799G:p.T267A exonic Map3k11 nonsynonymous SNV uc008get.1:c.A799G:p.T267A exonic ENSMUSG00000004054 nonsynonymous SNV ENSMUST00000004156:c.A799G:p.T267A 19qA NA NA chr19 5695217 ATTxCTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 160 0 0 39.35674 0.213333 0.02 1.423832 59 16 1684 486 60 60 0 0 AA 21.03953 70 0 1844 0 KEEP + Map3k11 NO UVC_2 chr19 57004722 57004722 C T exonic Afap1l2 nonsynonymous SNV NM_001177797:c.G436A:p.E146K exonic Afap1l2 nonsynonymous SNV uc008hzn.2:c.G436A:p.E146K exonic ENSMUSG00000025083 nonsynonymous SNV ENSMUST00000118800:c.G436A:p.E146K 19qD2 NA NA chr19 57004722 ACTxGTA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 37 0 0 38.633746 0.857143 0.02 -0.122766 2 12 51 354 60 60 0 0 CC 4.809783 16 0 427 0 KEEP - Afap1l2 YES UVC_2 chr19 60848778 60848778 T C exonic Eif3a synonymous SNV NM_010123:c.A1794G:p.E598E exonic Eif3a synonymous SNV uc008ibx.1:c.A1794G:p.E598E exonic ENSMUSG00000024991 synonymous SNV ENSMUST00000025955:c.A1794G:p.E598E 19qD3 NA NA chr19 60848778 AGCxTCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.999862 0.999862 1 206 0 0 50.775601 0.230769 0.02 1.292177 70 21 2102 621 60 60 0 0 TT 26.758741 89 0 2459 0 KEEP - Eif3a NO UVC_2 chr19 6109485 6109485 C T exonic Naaladl1 synonymous SNV NM_001009546:c.C1074T:p.I358I exonic Naaladl1 synonymous SNV uc008ghk.1:c.C1074T:p.I358I exonic ENSMUSG00000054999 synonymous SNV ENSMUST00000044451:c.C1074T:p.I358I 19qA NA NA chr19 6109485 CATxCAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 128 0 0 57.362486 0.396226 0.02 1.427315 32 21 977 628 60 60 0 0 CC 16.543226 55 0 1543 0 KEEP + Naaladl1 YES UVC_2 chr19 6109486 6109486 C T exonic Naaladl1 stopgain SNV NM_001009546:c.C1075T:p.Q359X exonic Naaladl1 stopgain SNV uc008ghk.1:c.C1075T:p.Q359X exonic ENSMUSG00000054999 stopgain SNV ENSMUST00000044451:c.C1075T:p.Q359X 19qA NA NA chr19 6109486 ATCxAGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 129 0 0 55.263864 0.396226 0.02 1.427425 32 21 929 607 60 60 0 0 CC 16.54304 55 0 1543 0 KEEP + Naaladl1 YES UVC_2 chr19 7051447 7051447 T C intronic Ppp1r14b NA NA intronic Ppp1r14b NA NA intronic ENSMUSG00000056612 NA NA 19qA NA NA chr19 7051447 GCCxCTC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322761 0.322807 0.99986 43 0 0 9.568564 0.222222 0.02 -0.157873 14 4 420 118 60 60 0 0 TT 5.715235 19 0 534 0 KEEP + Ppp1r14b NO UVC_2 chr19 7076923 7076923 C T exonic Fermt3 stopgain SNV NM_153795:c.G1331A:p.W444X exonic Fermt3 stopgain SNV uc008gkd.2:c.G1331A:p.W444X exonic ENSMUSG00000024965 stopgain SNV ENSMUST00000040772:c.G1331A:p.W444X 19qA NA NA chr19 7076923 ATCxACT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.95449 0.954491 0.999999 91 0 0 61.654872 0.44898 0.02 -0.429764 27 22 806 658 60 60 0 0 CC 10.797101 36 0 979 0 KEEP - Fermt3 YES UVC_2 chr19 9029857 9029857 T C intronic Tut1 NA NA intronic Tut1 NA NA intronic ENSMUSG00000071645 NA NA 19qA NA NA chr19 9029857 ACGxCTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 144 0 0 55.004447 0.333333 0.02 1.339638 42 21 1232 624 60 60 0 0 TT 19.247989 64 0 1741 0 KEEP + Tut1 NO UVC_2 chr19 9037314 9037314 T A splicing Tut1(NM_197993:exon5:c.1169+2T>A) NA NA exonic;splicing Tut1;Tut1(uc008goh.1:exon5:c.1169+2T>A) nonsynonymous SNV uc008gog.1:c.T1171A:p.Y391N splicing ENSMUSG00000071645(ENSMUST00000096239:exon5:c.1169+2T>A) NA NA 19qA NA NA chr19 9037314 CGGxACT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.99986 51 0 0 6.550176 0.12 0.02 -0.219205 22 3 609 91 60 60 0 1 TT 5.712139 19 0 495 0 KEEP + Tut1 NO UVC_2 chr19 9078234 9078234 A G exonic Ahnak synonymous SNV NM_009643:c.A2391G:p.E797E exonic Ahnak synonymous SNV uc008goj.1:c.A2391G:p.E797E exonic ENSMUSG00000069833 synonymous SNV ENSMUST00000088050:c.A1596G:p.E532E 19qA NA NA chr19 9078234 AGAxGGG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 199 0 0 45.578027 0.228916 0.02 1.164222 64 19 1941 559 60 60 0 0 AA 30.077823 100 0 2783 0 KEEP + Ahnak NO UVC_2 chr19 9086245 9086245 A G exonic Ahnak nonsynonymous SNV NM_009643:c.A10402G:p.M3468V exonic Ahnak nonsynonymous SNV uc008goj.1:c.A10402G:p.M3468V exonic ENSMUSG00000069833 nonsynonymous SNV ENSMUST00000092956:c.A10402G:p.M3468V 19qA "Score=0.951474;Name=No.72597,chr19:9083079" NA chr19 9086245 AGCxTGC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 128 0 0 28.253789 0.302326 0.02 -0.37698 30 13 887 335 60 60 0 0 AA 21.039066 70 0 1871 0 KEEP + Ahnak NO UVC_2 chr19 9209272 9209272 T A intronic Asrgl1 NA NA intronic Asrgl1 NA NA intronic ENSMUSG00000024654 NA NA 19qA NA NA chr19 9209272 TAAxTTA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 148 2 0 40.737505 0.301887 0.02 1.3287 37 16 1087 472 60 60 0 0 TT 21.649405 72 0 1943 0 KEEP - Asrgl1 NO UVC_2 chr1 108850223 108850223 T C intronic Serpinb12 NA NA intronic Serpinb12 NA NA intronic ENSMUSG00000059956 NA NA 1qE2.1 NA NA chr1 108850223 CTCxGTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423472 0.423478 0.999988 49 0 0 21.355448 0.380952 0.02 -0.184194 13 8 402 236 60 60 0 0 TT 8.12113 27 0 755 0 KEEP + Serpinb12 NO UVC_2 chr1 109274179 109274179 C G exonic Serpinb11 nonsynonymous SNV NM_025867:c.C707G:p.A236G exonic Serpinb11 nonsynonymous SNV uc007chl.1:c.C707G:p.A236G exonic ENSMUSG00000026327 nonsynonymous SNV ENSMUST00000027566:c.C707G:p.A236G 1qE2.1 NA NA chr1 109274179 ATGxCAA C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 151 0 0 36.518245 0.358974 0.02 -0.34198 25 14 746 409 60 60 0 0 CC 24.963404 83 0 2284 0 KEEP + Serpinb11 NO UVC_2 chr1 109348163 109348163 T A intronic Serpinb7 NA NA intronic Serpinb7 NA NA intronic ENSMUSG00000067001 NA NA 1qE2.1 NA NA chr1 109348163 GTTxCCA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.05402 0.054137 0.997832 28 0 0 27.112611 1 0.02 -0.070162 0 8 0 233 0 60 0 0 TT 4.812246 16 0 440 0 KEEP + Serpinb7 NO UVC_2 chr1 120361075 120361075 C T intronic Clasp1 NA NA intronic Clasp1 NA NA intronic ENSMUSG00000064302 NA NA 1qE2.3 NA NA chr1 120361075 TCCxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 64 2 0 40.1752 1 0.02 -0.104928 0 12 0 345 0 60 0 0 CC 12.618637 42 0 1174 0 KEEP + Clasp1 YES UVC_2 chr1 129914204 129914204 T G exonic Zranb3 nonsynonymous SNV NM_027678:c.A780C:p.E260D exonic Zranb3 nonsynonymous SNV uc007cld.1:c.A780C:p.E260D exonic ENSMUSG00000036086 nonsynonymous SNV ENSMUST00000037426:c.A780C:p.E260D 1qE4 NA NA chr1 129914204 AACxTCA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292001 0.292001 1 83 0 0 42.731495 0.823529 0.02 -0.149077 3 14 91 395 60 60 0 0 TT 15.64106 52 0 1452 0 KEEP - Zranb3 NO UVC_2 chr1 133246088 133246088 A G exonic Srgap2 nonsynonymous SNV NM_001081011:c.T997C:p.Y333H exonic Srgap2 nonsynonymous SNV uc011wrq.1:c.T997C:p.Y333H exonic ENSMUSG00000026425 nonsynonymous SNV ENSMUST00000097588:c.T997C:p.Y333H 1qE4 NA NA chr1 133246088 TGTxCAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 82 0 0 19.364457 0.266667 0.02 -0.262975 22 8 622 231 60 60 0 0 AA 12.022638 40 0 1030 0 KEEP - Srgap2 NO UVC_2 chr1 135801708 135801708 C T exonic Optc nonsynonymous SNV NM_001160421:c.G230A:p.G77E exonic Optc nonsynonymous SNV uc007cqy.2:c.G230A:p.G77E exonic ENSMUSG00000010311 nonsynonymous SNV ENSMUST00000010455:c.G71A:p.G24E 1qE4 NA NA chr1 135801708 TCCxCTA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 64 0 0 81.064661 1 0.02 -0.201738 0 23 0 701 0 60 0 0 CC 10.829046 36 0 1014 0 KEEP - Optc YES UVC_2 chr1 136209102 136209102 A G intronic Ppfia4 NA NA intronic Ppfia4 NA NA intronic ENSMUSG00000026458 NA NA 1qE4 NA NA chr1 136209102 AGGxGGC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353909 0.353947 0.999892 44 0 0 19.109547 0.368421 0.02 -0.166635 12 7 350 212 60 60 0 0 AA 6.917352 23 0 633 0 KEEP - Ppfia4 NO UVC_2 chr1 136443578 136443578 C G exonic 4931440L10Rik nonsynonymous SNV NM_001145300:c.G22C:p.G8R exonic 4931440L10Rik nonsynonymous SNV uc011wsf.1:c.G22C:p.G8R exonic ENSMUSG00000046367 nonsynonymous SNV ENSMUST00000052911:c.G22C:p.G8R 1qE4 NA NA chr1 136443578 TGCxTGT C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 88 0 0 117.460285 0.972973 0.02 -0.324463 1 36 30 1023 60 60 0 0 CC 14.740786 49 0 1406 0 KEEP - 4931440L10Rik NO UVC_2 chr1 137967551 137967551 C T exonic Cacna1s synonymous SNV NM_001081023:c.C606T:p.L202L exonic Cacna1s synonymous SNV uc007cuf.1:c.C606T:p.L202L exonic ENSMUSG00000026407 synonymous SNV ENSMUST00000057096:c.C606T:p.L202L 1qE4 NA NA chr1 137967551 GCTxGTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 132 1 0 175.844221 0.963636 0.02 1.409929 2 53 48 1543 60 60 0 0 CC 18.922472 63 0 1523 0 KEEP + Cacna1s YES UVC_2 chr1 156052397 156052397 A G exonic Zfp648 nonsynonymous SNV NM_001204908:c.A1171G:p.N391D intergenic "AK154552(dist=87316),AK019628(dist=36254)" NA NA exonic ENSMUSG00000066797 nonsynonymous SNV ENSMUST00000086195:c.A1171G:p.N391D 1qG3 NA NA chr1 156052397 TCTxACC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612405 0.612407 0.999997 63 0 0 27.680179 0.37037 0.02 -0.235432 17 10 461 306 60 60 0 0 AA 8.961084 30 0 767 0 KEEP NA Zfp648 NO UVC_2 chr1 162016230 162016230 A G exonic Tnn nonsynonymous SNV NM_177839:c.T4615C:p.F1539L exonic Tnn nonsynonymous SNV uc007dee.2:c.T4615C:p.F1539L exonic ENSMUSG00000026725 nonsynonymous SNV ENSMUST00000131919:c.T3823C:p.F1275L 1qH2.1 NA NA chr1 162016230 CAAxCGG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 77 0 0 24.399578 0.36 0.02 -0.219271 16 9 475 272 60 60 0 0 AA 12.629585 42 0 1132 0 KEEP - Tnn NO UVC_2 chr1 164569788 164569788 C T exonic Myoc nonsynonymous SNV NM_010865:c.C394T:p.L132F exonic Myoc nonsynonymous SNV uc007dgm.2:c.C394T:p.L132F exonic ENSMUSG00000026697 nonsynonymous SNV ENSMUST00000028020:c.C394T:p.L132F 1qH2.1 NA NA chr1 164569788 CTCxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.32057 0.322807 0.993072 30 0 0 63.781369 1 0.02 -0.157884 0 18 0 552 0 60 0 0 CC 3.308851 11 0 310 0 KEEP + Myoc YES UVC_2 chr1 164913282 164913282 C T intronic Fmo3 NA NA intronic Fmo3 NA NA intronic ENSMUSG00000026691 NA NA 1qH2.1 NA NA chr1 164913282 CTTxCAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 74 1 0 82.020256 0.96 0.02 -0.228048 1 24 31 724 60 60 0 0 CC 13.836626 46 0 1289 0 KEEP - Fmo3 YES UVC_2 chr1 164954640 164954640 C T exonic Mroh9 synonymous SNV NM_030071:c.G2610A:p.E870E exonic 4921528O07Rik synonymous SNV uc007dhg.2:c.G2610A:p.E870E exonic ENSMUSG00000071890 synonymous SNV ENSMUST00000096608:c.G2610A:p.E870E 1qH2.1 NA NA chr1 164954640 CTTxTCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 82 0 0 95.434095 0.878788 0.02 -0.28944 4 29 124 869 60 60 0 0 CC 12.635199 42 0 1210 0 KEEP - Mroh9 YES UVC_2 chr1 175146005 175146005 T C exonic Olfr1404 synonymous SNV NM_146881:c.T222C:p.Y74Y exonic Olfr1404 synonymous SNV uc007drd.2:c.T222C:p.Y74Y exonic ENSMUSG00000049456 synonymous SNV ENSMUST00000056592:c.T222C:p.Y74Y 1qH3 NA NA chr1 175146005 CTAxACC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 175 2 0 43.637725 0.278689 0.02 1.45612 44 17 1269 512 60 60 0 0 TT 27.661541 92 0 2420 0 KEEP + Olfr1404 NO UVC_2 chr1 177818967 177818967 A G exonic Exo1 nonsynonymous SNV NM_012012:c.A518G:p.D173G exonic Exo1 nonsynonymous SNV uc007dtu.2:c.A518G:p.D173G exonic ENSMUSG00000039748 nonsynonymous SNV ENSMUST00000039725:c.A518G:p.D173G 1qH4 NA NA chr1 177818967 CTGxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.95449 0.954491 0.999999 96 0 0 146.73337 0.918367 0.02 -0.429705 4 45 116 1313 60 60 0 0 AA 10.82153 36 0 973 0 KEEP + Exo1 NO UVC_2 chr1 182524273 182524273 C A exonic Parp1 nonsynonymous SNV NM_007415:c.C2254A:p.L752M exonic Parp1 nonsynonymous SNV uc007dwi.1:c.C2254A:p.L752M exonic ENSMUSG00000026496 nonsynonymous SNV ENSMUST00000027777:c.C2254A:p.L752M 1qH4 NA NA chr1 182524273 CTCxTGA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 75 0 0 65.693211 0.954545 0.02 -0.191755 1 21 30 576 60 60 0 0 CC 12.928953 43 0 1210 0 KEEP + Parp1 NO UVC_2 chr1 183122023 183122023 A G exonic Wdr26 nonsynonymous SNV NM_145514:c.T967C:p.F323L exonic Wdr26 nonsynonymous SNV uc007dxf.2:c.T967C:p.F323L exonic ENSMUSG00000038733 nonsynonymous SNV ENSMUST00000111053:c.T586C:p.F196L 1qH4 NA NA chr1 183122023 GAAxCTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291997 0.292001 0.999988 50 0 0 12.713406 0.294118 0.02 -0.149096 12 5 350 148 60 60 0 0 AA 8.118602 27 0 726 0 KEEP - Wdr26 NO UVC_2 chr1 191984877 191984877 T C exonic Prox1 nonsynonymous SNV NM_008937:c.A1249G:p.I417V exonic Prox1 nonsynonymous SNV uc007ebb.1:c.A1249G:p.I417V exonic ENSMUSG00000010175 nonsynonymous SNV ENSMUST00000010319:c.A1249G:p.I417V 1qH6 NA NA chr1 191984877 GAAxGAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 198 0 0 106.735173 0.645161 0.02 1.24998 22 40 654 1052 60 60 0 0 TT 34.584116 115 0 3105 0 KEEP - Prox1 NO UVC_2 chr1 26744177 26744177 A G exonic 4931408C20Rik nonsynonymous SNV NM_001033764:c.T95C:p.M32T exonic 4931408C20Rik nonsynonymous SNV uc007amz.2:c.T95C:p.M32T exonic ENSMUSG00000073722 nonsynonymous SNV ENSMUST00000097801:c.T95C:p.M32T 1qA5 NA NA chr1 26744177 CACxTAA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 246 5 0 23.459256 0.179104 0.02 1.20604 55 12 1611 314 60 60 0 0 AA 44.209341 147 0 3981 0 KEEP - 4931408C20Rik NO UVC_2 chr1 34246572 34246572 T A exonic Dst nonsynonymous SNV NM_134448:c.T6400A:p.S2134T exonic Dst nonsynonymous SNV uc007aoi.1:c.T6400A:p.S2134T exonic ENSMUSG00000026131 nonsynonymous SNV ENSMUST00000097785:c.T6400A:p.S2134T 1qB NA NA chr1 34246572 TCTxCAA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.582927 0.58293 0.999994 83 0 0 36.273008 0.5 0.02 -0.228038 13 13 393 379 60 60 0 0 TT 13.234824 44 0 1227 0 KEEP + Dst NO UVC_2 chr1 52179491 52179491 C T exonic Stat1 synonymous SNV NM_001205313:c.C54T:p.V18V exonic Stat1 synonymous SNV uc007axy.1:c.C54T:p.V18V exonic ENSMUSG00000026104 synonymous SNV ENSMUST00000070968:c.C54T:p.V18V 1qC1.1 NA NA chr1 52179491 GGTxCAC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 70 2 0 55.122457 1 0.02 -0.140304 0 16 0 475 0 60 0 0 CC 13.456579 45 0 1209 0 KEEP + Stat1 YES UVC_2 chr1 59259840 59259840 G C exonic Als2 synonymous SNV NM_001159948:c.C1899G:p.G633G exonic Als2 synonymous SNV uc007bdm.2:c.C1899G:p.G633G exonic ENSMUSG00000026024 synonymous SNV ENSMUST00000027178:c.C1899G:p.G633G 1qC1.3 NA NA chr1 59259840 TCGxCCA G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 150 2 0 52.482065 0.37037 0.02 1.418579 34 20 1017 584 60 60 0 0 GG 26.138805 87 0 2352 0 KEEP - Als2 NO UVC_2 chr1 63778605 63778605 C A exonic Fastkd2 nonsynonymous SNV NM_172422:c.C545A:p.S182Y exonic Fastkd2 nonsynonymous SNV uc007bgk.2:c.C545A:p.S182Y exonic ENSMUSG00000025962 nonsynonymous SNV ENSMUST00000027103:c.C545A:p.S182Y 1qC2 NA NA chr1 63778605 TATxTGA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 84 0 0 105.240323 0.916667 0.02 -0.315686 3 33 93 940 60 60 0 0 CC 13.233459 44 0 1244 0 KEEP + Fastkd2 NO UVC_2 chr1 63784413 63784413 T C exonic Fastkd2 nonsynonymous SNV NM_172422:c.T1133C:p.L378P exonic Fastkd2 nonsynonymous SNV uc007bgl.2:c.T1133C:p.L378P exonic ENSMUSG00000025962 nonsynonymous SNV ENSMUST00000087369:c.T1100C:p.L367P 1qC2 NA NA chr1 63784413 ACCxCCG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 77 0 0 20.747681 0.307692 0.02 -0.228037 18 8 542 239 60 60 0 0 TT 12.030995 40 0 1106 0 KEEP + Fastkd2 NO UVC_2 chr1 64969001 64969001 C A exonic Plekhm3 nonsynonymous SNV NM_001039493:c.G669T:p.K223N exonic Plekhm3 nonsynonymous SNV uc007bha.1:c.G669T:p.K223N exonic ENSMUSG00000051344 nonsynonymous SNV ENSMUST00000097713:c.G669T:p.K223N 1qC2 NA NA chr1 64969001 GTTxTTC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851982 0.851984 0.999998 79 1 0 108.353117 0.894737 0.02 -0.33326 4 34 124 977 60 60 0 0 CC 10.227769 34 0 966 0 KEEP - Plekhm3 NO UVC_2 chr1 67051454 67051454 C G exonic Lancl1 synonymous SNV NM_001190985:c.G960C:p.G320G exonic Lancl1 synonymous SNV uc007biw.2:c.G960C:p.G320G exonic ENSMUSG00000026000 synonymous SNV ENSMUST00000113979:c.G960C:p.G320G 1qC3 NA NA chr1 67051454 CAGxCCG C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 76 1 0 87.567943 0.928571 0.02 -0.245584 2 26 61 783 60 60 0 0 CC 11.426427 38 0 1033 0 KEEP - Lancl1 NO UVC_2 chr1 68352449 68352449 C T exonic Erbb4 nonsynonymous SNV NM_010154:c.G1686A:p.M562I exonic Erbb4 nonsynonymous SNV uc007bjb.1:c.G1686A:p.M562I exonic ENSMUSG00000062209 nonsynonymous SNV ENSMUST00000097703:c.G1686A:p.M562I 1qC3 NA NA chr1 68352449 TTCxATT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 86 4 0 91.916097 0.931034 0.02 -0.254362 2 27 58 822 60 60 0 0 CC 12.634695 42 0 1201 0 KEEP - Erbb4 YES UVC_2 chr1 74782431 74782431 C A intronic Cyp27a1 NA NA intronic Cyp27a1 NA NA intronic ENSMUSG00000026170 NA NA 1qC3 NA NA chr1 74782431 TTCxACG C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423477 0.423478 0.999997 61 2 0 73.711024 1 0.02 -0.184194 0 21 0 637 0 60 0 0 CC 9.325205 31 0 879 0 KEEP + Cyp27a1 NO UVC_2 chr1 74967170 74967170 C T exonic Ccdc108 synonymous SNV NM_001039495:c.G2394A:p.Q798Q exonic Ccdc108 synonymous SNV uc007bnj.1:c.G2394A:p.Q798Q exonic ENSMUSG00000047021 synonymous SNV ENSMUST00000094844:c.G2394A:p.Q798Q 1qC3 NA NA chr1 74967170 GCTxTGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 97 0 0 107.804146 0.969697 0.02 -0.289391 1 32 31 945 60 60 0 0 CC 15.341394 51 0 1464 0 KEEP - Ccdc108 YES UVC_2 chr1 75484499 75484499 C A exonic Obsl1 nonsynonymous SNV NM_178884:c.G4852T:p.A1618S exonic Obsl1 nonsynonymous SNV uc007bpn.2:c.G4852T:p.A1618S exonic ENSMUSG00000026211 nonsynonymous SNV ENSMUST00000064469:c.G2749T:p.A917S 1qC4 NA NA chr1 75484499 GCGxAGG C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322807 0.322807 1 76 0 0 53.503442 0.888889 0.02 -0.15788 2 16 59 486 60 60 0 0 CC 14.439487 48 0 1369 0 KEEP - Obsl1 NO UVC_2 chr1 85271650 85271650 G T intergenic "C130026I21Rik(dist=4509),NONE(dist=NONE)" NA NA ncRNA_intronic AK163333 NA NA ncRNA_intronic ENSMUSG00000079455 NA NA 1qC5 "Score=0.988931;Name=No.600,chr1_random:697004" NA chr1 85271650 TTTxCCT G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 186 2 90 14.349677 0.193548 0.02 -0.271909 25 6 764 181 20 20 0 0 GG 31.267465 104 0 2950 0 KEEP - C130026I21Rik NO UVC_2 chr1 87577682 87577682 C T exonic Sp100 nonsynonymous SNV NM_013673:c.C956T:p.S319F exonic Sp100 nonsynonymous SNV uc007bud.1:c.C956T:p.S319F exonic ENSMUSG00000026222 nonsynonymous SNV ENSMUST00000054279:c.C956T:p.S319F 1qC5 NA NA chr1 87577682 GCTxTAT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 83 0 0 89.892845 1 0.02 -0.228038 0 26 0 775 0 60 0 0 CC 13.537368 45 0 1291 0 KEEP + Sp100 YES UVC_2 chr1 87923057 87923057 G T exonic Spata3 nonsynonymous SNV NM_001122732:c.G542T:p.G181V exonic Spata3 nonsynonymous SNV uc007but.2:c.G370T:p.A124S exonic ENSMUSG00000026226 nonsynonymous SNV ENSMUST00000153247:c.G370T:p.A124S 1qC5 NA NA chr1 87923057 GTGxCTC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999995 0.999995 1 414 0 0 10.592594 0.053097 0.02 2.694676 107 6 3175 179 60 60 0 0 GG 70.676913 235 0 6470 0 KEEP + Spata3 NO UVC_2 chr1 89050816 89050816 C A exonic Ecel1 nonsynonymous SNV NM_001277925:c.G749T:p.S250I exonic Ecel1 nonsynonymous SNV uc007bwc.1:c.G749T:p.S250I exonic ENSMUSG00000026247 nonsynonymous SNV ENSMUST00000027463:c.G749T:p.S250I 1qD NA NA chr1 89050816 AGGxTGA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 87 0 0 110.974865 0.970588 0.02 -0.298194 1 33 29 972 29 60 0 0 CC 12.570796 42 0 1151 0 KEEP - Ecel1 NO UVC_2 chr1 89089497 89089497 G C exonic Chrnd nonsynonymous SNV NM_021600:c.G595C:p.E199Q exonic Chrnd nonsynonymous SNV uc007bwg.1:c.G268C:p.E90Q exonic ENSMUSG00000026251 nonsynonymous SNV ENSMUST00000086943:c.G673C:p.E225Q 1qD NA NA chr1 89089497 ATCxAGT G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 71 2 0 25.364729 0.428571 0.02 -0.184198 12 9 373 273 60 60 0 0 GG 12.033445 40 0 1151 0 KEEP + Chrnd NO UVC_2 chr1 90108542 90108542 T G UTR5 Ugt1a1 NA NA UTR5 Ugt1a1 NA NA ncRNA_UTR5 ENSMUSG00000089960 NA NA 1qD NA NA chr1 90108542 GAGxAGA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 359 0 0 42.544533 0.125 0.02 4.276427 140 20 3994 591 70 60 0 0 TT 42.68332 142 0 3711 0 KEEP + Ugt1a1 NO UVC_2 chr1 90112363 90112363 C T intronic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" NA NA UTR3 Ugt1a6 NA NA ncRNA_intronic ENSMUSG00000092220 NA NA 1qD NA NA chr1 90112363 CCCxTGT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 382 0 0 48.399628 0.123596 0.02 4.106683 156 22 4648 668 60 60 0 0 CC 42.698246 142 0 3993 0 KEEP + Ugt1a1 YES UVC_2 chr1 90112715 90112715 C A exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1087A:p.H363N exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1078A:p.H360N exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1081A:p.H361N 1qD NA NA chr1 90112715 GGTxATC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9339 0.934492 0.999366 68 0 0 23.231678 0.227273 0.02 -0.403463 34 10 1042 287 60 60 0 0 CC 5.106648 17 0 470 0 KEEP + Ugt1a1 NO UVC_2 chr1 90112835 90112835 C T exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.C1207T:p.R403C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.C1198T:p.R400C exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.C1201T:p.R401C 1qD NA NA chr1 90112835 AAGxGCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 134 0 0 20.478071 0.176471 0.02 1.34637 42 9 1179 265 60 60 0 0 CC 18.044386 60 0 1644 0 KEEP + Ugt1a1 YES UVC_2 chr1 90112848 90112848 G C exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV NM_013701:c.G1220C:p.R407P exonic "Ugt1a1,Ugt1a10,Ugt1a2,Ugt1a5,Ugt1a6a,Ugt1a6b,Ugt1a7c,Ugt1a9" nonsynonymous SNV uc007bya.1:c.G1211C:p.R404P exonic "ENSMUSG00000054545,ENSMUSG00000089675,ENSMUSG00000089943,ENSMUSG00000089960,ENSMUSG00000090124,ENSMUSG00000090145,ENSMUSG00000090165,ENSMUSG00000090171,ENSMUSG00000090175" nonsynonymous SNV ENSMUST00000014263:c.G1214C:p.R405P 1qD NA NA chr1 90112848 CTCxGGG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 151 0 0 26.491111 0.20339 0.02 1.276269 47 12 1277 337 60 60 0 0 GG 18.92984 63 0 1585 0 KEEP + Ugt1a1 NO UVC_2 chr1 90137284 90137284 G T exonic Mroh2a nonsynonymous SNV NM_001281466:c.G1765T:p.G589C exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.G1774T:p.G592C exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.G1765T:p.G589C 1qD NA NA chr1 90137284 GAAxGCC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 198 2 0 32.408936 0.15 0.02 1.015147 85 15 2547 436 60 60 0 0 GG 21.357292 71 0 2027 0 KEEP + Mroh2a NO UVC_2 chr1 90138193 90138193 A C exonic Mroh2a nonsynonymous SNV NM_001281466:c.A2005C:p.I669L exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.A2014C:p.I672L exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.A2005C:p.I669L 1qD NA NA chr1 90138193 CAGxTCG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 300 0 0 18.056424 0.096154 0.02 2.6708 94 10 2768 275 60 60 0 0 AA 39.678652 132 0 3547 0 KEEP + Mroh2a NO UVC_2 chr1 90139267 90139267 G A exonic Mroh2a synonymous SNV NM_001281466:c.G2181A:p.L727L exonic Heatr7b1 synonymous SNV uc011wov.1:c.G2190A:p.L730L exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.G2181A:p.L727L 1qD NA NA chr1 90139267 ACTxTGT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 364 1 0 22.997953 0.076471 0.02 3.854604 157 13 4638 367 60 60 0 0 GG 41.479878 138 0 3823 0 KEEP + Mroh2a YES UVC_2 chr1 90142592 90142592 C T exonic Mroh2a synonymous SNV NM_001281466:c.C2586T:p.H862H exonic Heatr7b1 synonymous SNV uc011wov.1:c.C2595T:p.H865H exonic ENSMUSG00000079429 synonymous SNV ENSMUST00000113130:c.C2586T:p.H862H 1qD NA NA chr1 90142592 CCAxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 335 2 0 17.159021 0.07377 0.02 2.617896 113 9 3351 268 60 60 0 0 CC 47.181285 157 0 4345 0 KEEP + Mroh2a YES UVC_2 chr1 90145105 90145105 G A intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90145105 TCTxTGT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 118 0 0 7.912471 0.102564 0.02 -0.412205 35 4 1041 116 60 60 0 0 GG 15.641541 52 0 1481 0 KEEP + Mroh2a YES UVC_2 chr1 90147940 90147940 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3310T:p.L1104F exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3319T:p.L1107F exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3310T:p.L1104F 1qD NA NA chr1 90147940 TTCxTCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 233 0 0 28.631822 0.13 0.02 2.758323 87 13 2602 392 70 60 0 0 CC 31.282293 104 0 2959 0 KEEP + Mroh2a YES UVC_2 chr1 90147949 90147949 C T exonic Mroh2a nonsynonymous SNV NM_001281466:c.C3319T:p.R1107W exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.C3328T:p.R1110W exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.C3319T:p.R1107W 1qD NA NA chr1 90147949 ATGxGGG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 210 0 0 23.57999 0.127907 0.02 2.62318 75 11 1939 326 70 60 0 0 CC 28.221001 94 0 2168 0 KEEP + Mroh2a YES UVC_2 chr1 90153329 90153329 T C exonic Mroh2a nonsynonymous SNV NM_001281466:c.T4358C:p.V1453A exonic Heatr7b1 nonsynonymous SNV uc011wov.1:c.T4382C:p.V1461A exonic ENSMUSG00000079429 nonsynonymous SNV ENSMUST00000113130:c.T4358C:p.V1453A 1qD NA NA chr1 90153329 AGGxCCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 162 0 0 27.304608 0.171429 0.02 1.278273 58 12 1709 355 60 60 0 0 TT 22.226655 74 0 1983 0 KEEP + Mroh2a NO UVC_2 chr1 90154258 90154258 C T intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90154258 TGGxAGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959857 0.959859 0.999998 95 0 0 35.185189 0.3 0.02 -0.438249 35 15 1034 413 60 60 0 0 CC 9.924726 33 0 905 0 KEEP + Mroh2a YES UVC_2 chr1 90155329 90155329 C G intronic Mroh2a NA NA intronic Heatr7b1 NA NA intronic ENSMUSG00000079429 NA NA 1qD NA NA chr1 90155329 TGAxCCT C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 177 0 0 21.943516 0.140845 0.02 2.863448 61 10 1833 297 60 60 0 0 CC 19.853035 66 0 1857 0 KEEP + Mroh2a NO UVC_2 chr1 90156074 90156074 T A UTR3 Hjurp NA NA UTR3 "A730008H23Rik,Hjurp" NA NA UTR3 ENSMUSG00000044783 NA NA 1qD NA NA chr1 90156074 GAGxTAA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999993 0.999993 1 191 0 0 24.775672 0.109091 0.02 2.819716 98 12 2868 355 60 60 0 0 TT 17.136682 57 0 1540 0 KEEP + Hjurp NO UVC_2 chr1 90161760 90161760 G A exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.C1772T:p.P591L exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc011wow.1:c.C1376T:p.P459L exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000100097:c.C473T:p.P158L 1qD NA NA chr1 90161760 CAGxGCC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 89 0 0 19.725461 0.210526 0.02 -0.342073 30 8 911 244 60 60 0 0 GG 11.731581 39 0 1104 0 KEEP - A730008H23Rik YES UVC_2 chr1 90171625 90171625 A T exonic "A730008H23Rik,Hjurp" nonsynonymous SNV NM_172505:c.T211A:p.Y71N exonic "A730008H23Rik,Hjurp" nonsynonymous SNV uc007bym.2:c.T211A:p.Y71N exonic ENSMUSG00000044783 nonsynonymous SNV ENSMUST00000054674:c.T211A:p.Y71N 1qD NA NA chr1 90171625 TGTxTTC A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 350 2 0 24.8067 0.098361 0.02 2.688512 110 12 3135 361 60 60 0 0 AA 52.578618 175 0 4596 0 KEEP - A730008H23Rik NO UVC_2 chr1_random 632158 632158 C A intergenic "Hhipl2(dist=221757),NONE(dist=NONE)" NA NA intergenic "Gm16026(dist=41068),AK163333(dist=140000)" NA NA intergenic "ENSMUSG00000079791(dist=5172),ENSMUSG00000079194(dist=95329)" NA NA NA "Score=0.987079;Name=No.74901,chr1_random:697004" NA chr1_random 632158 CTCxTTT C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.077335 0.077336 0.999997 107 1 51 10.52352 0.444444 0.02 -0.078876 5 4 135 113 37 37 0 0 CC 19.553563 65 0 1856 0 KEEP NA Hhipl2 NO UVC_2 chr2 101483093 101483093 A G exonic Rag1 synonymous SNV NM_009019:c.T1860C:p.V620V exonic Rag1 synonymous SNV uc008lhk.1:c.T1860C:p.V620V exonic ENSMUSG00000061311 synonymous SNV ENSMUST00000078494:c.T1860C:p.V620V 2qE2 NA NA chr2 101483093 ACGxACG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 576 0 0 95.122369 0.225434 0.02 4.249586 134 39 4029 1166 60 60 0 0 AA 100.66669 335 0 9167 0 KEEP - Rag1 NO UVC_2 chr2 101483141 101483141 A G exonic Rag1 synonymous SNV NM_009019:c.T1812C:p.D604D exonic Rag1 synonymous SNV uc008lhk.1:c.T1812C:p.D604D exonic ENSMUSG00000061311 synonymous SNV ENSMUST00000078494:c.T1812C:p.D604D 2qE2 NA NA chr2 101483141 CACxTCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 827 3 0 137.181042 0.291304 0.02 5.158097 163 67 4770 1655 60 60 0 0 AA 136.93055 456 0 12089 0 KEEP - Rag1 NO UVC_2 chr2 103114157 103114157 A T intronic Ehf NA NA intronic Ehf NA NA intronic ENSMUSG00000012350 NA NA 2qE2 NA NA chr2 103114157 ATGxCAC A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918169 0.918171 0.999998 84 0 0 36.027259 0.318182 0.02 -0.385903 30 14 893 413 60 60 0 0 AA 10.219673 34 0 915 0 KEEP - Ehf NO UVC_2 chr2 103832781 103832781 C T intergenic "Lmo2(dist=10746),Fbxo3(dist=35175)" NA NA ncRNA_exonic AK076716 NA NA exonic ENSMUSG00000046085 nonsynonymous SNV ENSMUST00000056170:c.G313A:p.D105N 2qE2 NA NA chr2 103832781 AATxGCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612327 0.612407 0.999869 50 2 0 36.782023 0.481481 0.02 -0.236787 14 13 416 387 60 60 0 0 CC 6.31683 21 0 593 0 KEEP - Lmo2 YES UVC_2 chr2 105649488 105649488 G A exonic Elp4 nonsynonymous SNV NM_023876:c.C856T:p.L286F exonic Elp4 nonsynonymous SNV uc008lld.1:c.C856T:p.L286F exonic ENSMUSG00000027167 nonsynonymous SNV ENSMUST00000028588:c.C502T:p.L168F 2qE3 NA NA chr2 105649488 GAAxAAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 55 0 0 48.676213 0.882353 0.02 -0.149094 2 15 62 442 60 60 0 0 GG 7.9102 29 1 836 7 KEEP - Elp4 YES UVC_2 chr2 111784949 111784949 G A exonic Olfr1307 synonymous SNV NM_001011787:c.C663T:p.I221I exonic Olfr1307 synonymous SNV uc008lod.1:c.C663T:p.I221I exonic ENSMUSG00000074953 synonymous SNV ENSMUST00000099606:c.C663T:p.I221I 2qE3 NA NA chr2 111784949 TATxATA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 373 0 0 288.22514 0.690647 0.02 2.565297 43 96 1315 2798 60 60 0 0 GG 57.147924 190 0 5440 0 KEEP - Olfr1307 YES UVC_2 chr2 111996172 111996172 G A exonic Olfr1318 stopgain SNV NM_001011802:c.G63A:p.W21X exonic Olfr1318 stopgain SNV uc008lon.2:c.G63A:p.W21X exonic ENSMUSG00000049758 stopgain SNV ENSMUST00000058176:c.G63A:p.W21X 2qE3 "Score=0.946877;Name=No.75325,chr2:111981629" NA chr2 111996172 ATGxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 147 0 0 118.005029 0.609375 0.02 1.330832 25 39 760 1180 60 60 0 0 GG 20.749429 69 0 1954 0 KEEP + Olfr1318 YES UVC_2 chr2 112595273 112595273 G T exonic Ryr3 synonymous SNV NM_177652:c.C8298A:p.A2766A exonic Ryr3 synonymous SNV uc008lpg.1:c.C8298A:p.A2766A exonic ENSMUSG00000057378 synonymous SNV ENSMUST00000080673:c.C8238A:p.A2746A 2qE3 NA NA chr2 112595273 CTTxGCC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999835 0.999835 1 310 1 0 219.659818 0.970149 0.02 1.103011 2 65 60 1926 60 60 0 0 GG 53.52022 178 0 5010 0 KEEP - Ryr3 NO UVC_2 chr2 117945685 117945685 A G exonic Thbs1 nonsynonymous SNV NM_011580:c.A2062G:p.I688V exonic Thbs1 nonsynonymous SNV uc008lrq.1:c.A2062G:p.I688V exonic ENSMUSG00000040152 nonsynonymous SNV ENSMUST00000039559:c.A2062G:p.I688V 2qE5 NA NA chr2 117945685 GGCxTCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800243 0.800245 0.999997 69 0 0 20.47617 0.285714 0.02 -0.306887 25 10 737 248 60 60 0 0 AA 9.022073 30 0 810 0 KEEP + Thbs1 NO UVC_2 chr2 119179043 119179043 A T exonic Chac1 nonsynonymous SNV NM_026929:c.A389T:p.Y130F exonic Chac1 nonsynonymous SNV uc008lts.2:c.A389T:p.Y130F exonic ENSMUSG00000027313 nonsynonymous SNV ENSMUST00000028780:c.A389T:p.Y130F 2qE5 NA NA chr2 119179043 TTTxTCC A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999317 0.999317 1 229 0 0 74.779783 0.345679 0.02 1.181777 53 28 1538 841 60 60 0 0 AA 34.234685 114 0 3014 0 KEEP + Chac1 NO UVC_2 chr2 119855832 119855832 C G exonic Jmjd7 nonsynonymous SNV NM_001114637:c.C103G:p.P35A exonic Jmjd7 nonsynonymous SNV uc008luy.2:c.C103G:p.P35A exonic ENSMUSG00000033852 nonsynonymous SNV ENSMUST00000044675:c.C103G:p.P35A 2qE5 NA NA chr2 119855832 GAGxCCC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 162 0 0 43.742311 0.24 0.02 1.22566 57 18 1672 531 60 60 0 0 CC 20.737196 69 0 1882 0 KEEP + Jmjd7 NO UVC_2 chr2 121163587 121163587 C T exonic Ppip5k1 nonsynonymous SNV NM_178795:c.G2069A:p.R690Q exonic Ppip5k1 nonsynonymous SNV uc008lyp.1:c.G437A:p.R146Q exonic ENSMUSG00000033526 nonsynonymous SNV ENSMUST00000110624:c.G2069A:p.R690Q 2qE5 NA NA chr2 121163587 TCCxGAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612406 0.612407 0.999998 65 0 0 27.743826 0.37037 0.02 -0.236752 17 10 460 307 60 60 0 0 CC 9.918752 33 0 855 0 KEEP - Ppip5k1 YES UVC_2 chr2 121891258 121891258 G A exonic Spg11 synonymous SNV NM_145531:c.C5214T:p.F1738F exonic Spg11 synonymous SNV uc008mac.2:c.C5214T:p.F1738F exonic ENSMUSG00000033396 synonymous SNV ENSMUST00000036450:c.C5214T:p.F1738F 2qE5 NA NA chr2 121891258 AGAxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 32 0 0 16.865313 0.461538 0.02 -0.122792 7 6 210 179 60 60 0 0 GG 4.512722 15 0 436 0 KEEP - Spg11 YES UVC_2 chr2 122004340 122004340 G A exonic Trim69 nonsynonymous SNV NM_080510:c.G1144A:p.E382K exonic Trim69 nonsynonymous SNV uc008mah.1:c.G1144A:p.E382K exonic ENSMUSG00000033368 nonsynonymous SNV ENSMUST00000036089:c.G1144A:p.E382K 2qE5 NA NA chr2 122004340 TGGxAAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 103 2 1 93.432315 0.645833 0.02 -0.420995 17 31 518 922 60 60 0 0 GG 12.633026 42 0 1184 0 KEEP + Trim69 YES UVC_2 chr2 122280977 122280977 G A exonic Slc28a2 synonymous SNV NM_172980:c.G1215A:p.R405R exonic Slc28a2 synonymous SNV uc008mat.1:c.G1215A:p.R405R exonic ENSMUSG00000027219 synonymous SNV ENSMUST00000110524:c.G1215A:p.R405R 2qE5 "Score=0.915092;Name=No.75338,chr2:122338591" NA chr2 122280977 GAGxAAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 109 0 4 33.551608 0.270833 0.02 -0.437239 35 13 994 395 60 60 0 0 GG 11.732104 39 0 1112 0 KEEP + Slc28a2 YES UVC_2 chr2 125186865 125186865 T G intronic Fbn1 NA NA intronic Fbn1 NA NA intronic ENSMUSG00000027204 NA NA 2qF1 NA NA chr2 125186865 GCCxCTG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 193 0 0 50.723406 0.32 0.02 1.135905 51 24 1561 597 60 60 0 0 TT 27.974633 93 0 2612 0 KEEP - Fbn1 NO UVC_2 chr2 125189551 125189551 A C intronic Fbn1 NA NA intronic Fbn1 NA NA intronic ENSMUSG00000027204 NA NA 2qF1 NA NA chr2 125189551 AAGxGGA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 87 1 0 18.160872 0.347826 0.02 -0.201293 15 8 424 208 60 60 0 0 AA 15.314179 51 0 1405 0 KEEP - Fbn1 NO UVC_2 chr2 127068811 127068811 A G intronic Ciao1 NA NA intronic Ciao1 NA NA intronic ENSMUSG00000003662 NA NA 2qF1 NA NA chr2 127068811 ATGxCTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 100 0 0 26.690355 0.314286 0.02 -0.306734 24 11 661 309 60 60 0 0 AA 14.121522 47 0 1231 0 KEEP - Ciao1 NO UVC_2 chr2 129444162 129444162 A T intronic Sirpa NA NA intronic Sirpa NA NA intronic ENSMUSG00000037902 NA NA 2qF1 NA NA chr2 129444162 CGTxCAT A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 109 0 0 42.709823 0.363636 0.02 -0.385832 28 16 796 476 60 60 0 0 AA 17.138178 57 0 1496 0 KEEP + Sirpa NO UVC_2 chr2 129927523 129927523 G A exonic AU015228 nonsynonymous SNV NM_001033197:c.G1264A:p.E422K exonic AU015228 nonsynonymous SNV uc008mih.1:c.G1264A:p.E422K ncRNA_exonic ENSMUSG00000074804 NA NA 2qF1 NA NA chr2 129927523 GAAxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999999 0.999999 1 351 2 0 235.555939 0.639344 0.02 2.912173 44 78 1337 2330 60 60 0 0 GG 51.743797 172 0 4955 0 KEEP + AU015228 YES UVC_2 chr2 130266285 130266285 A G exonic Vps16 nonsynonymous SNV NM_030559:c.A1301G:p.Y434C exonic "Vps16,mVps16" nonsynonymous SNV uc008mjb.2:c.A41G:p.Y14C exonic ENSMUSG00000027411 nonsynonymous SNV ENSMUST00000110271:c.A275G:p.Y92C 2qF1 NA NA chr2 130266285 ACTxCCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 151 0 0 53.050578 0.314286 0.02 1.377853 48 22 1379 615 60 60 0 0 AA 20.734564 69 0 1783 0 KEEP + Vps16 NO UVC_2 chr2 150669137 150669137 T C exonic Abhd12 nonsynonymous SNV NM_024465:c.A563G:p.E188G exonic Abhd12 nonsynonymous SNV uc008muo.2:c.A563G:p.E188G exonic ENSMUSG00000032046 nonsynonymous SNV ENSMUST00000056149:c.A563G:p.E188G 2qG3 NA NA chr2 150669137 AGCxCCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 61 0 0 21.760772 0.363636 0.02 -0.192718 14 8 413 242 60 60 0 0 TT 8.420684 28 0 773 0 KEEP - Abhd12 NO UVC_2 chr2 152839736 152839736 C T intronic Pdrg1 NA NA intronic Pdrg1 NA NA intronic ENSMUSG00000027472 NA NA 2qH1 NA NA chr2 152839736 TGTxGCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 179 0 0 49.936869 0.311475 0.02 1.348527 42 19 1179 573 60 60 0 0 CC 26.406907 88 0 2338 0 KEEP - Pdrg1 YES UVC_2 chr2 153758492 153758492 C T UTR3 Bpifb3 NA NA UTR3 Rya3 NA NA UTR3 ENSMUSG00000068008 NA NA 2qH1 NA NA chr2 153758492 GCTxTCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999998 71 0 0 26.847096 0.384615 0.02 -0.228025 16 10 478 296 60 60 0 0 CC 9.927566 33 0 949 0 KEEP + Bpifb3 YES UVC_2 chr2 154060490 154060490 T C intronic Bpifb5 NA NA intronic BC018465 NA NA intronic ENSMUSG00000038572 NA NA 2qH1 NA NA chr2 154060490 GCCxTTT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 167 2 0 150.128455 0.705882 0.02 1.394942 20 48 580 1451 60 60 0 0 TT 21.35598 71 0 1988 0 KEEP + Bpifb5 NO UVC_2 chr2 154196406 154196406 G A exonic Cdk5rap1 synonymous SNV NM_025876:c.C267T:p.L89L exonic Cdk5rap1 synonymous SNV uc008njb.1:c.C267T:p.L89L exonic ENSMUSG00000027487 synonymous SNV ENSMUST00000028990:c.C267T:p.L89L 2qH1 NA NA chr2 154196406 CGAxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.228676 0.229173 0.997832 36 2 0 34.369632 0.733333 0.02 -0.131548 4 11 114 329 60 60 0 0 GG 4.81307 16 0 457 0 KEEP - Cdk5rap1 YES UVC_2 chr2 154703475 154703475 T C exonic Eif2s2 synonymous SNV NM_026030:c.A609G:p.K203K exonic Eif2s2 synonymous SNV uc008njw.1:c.A609G:p.K203K exonic ENSMUSG00000074656 synonymous SNV ENSMUST00000099173:c.A609G:p.K203K 2qH1 NA NA chr2 154703475 AGGxTTC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 237 0 0 115.363871 0.415842 0.02 2.898774 59 42 1698 1251 60 60 0 0 TT 29.212795 101 1 2691 10 KEEP - Eif2s2 NO UVC_2 chr2 154893103 154893103 G A exonic Ahcy nonsynonymous SNV NM_016661:c.C251T:p.T84I exonic Ahcy nonsynonymous SNV uc008nka.2:c.C251T:p.T84I exonic ENSMUSG00000027597 nonsynonymous SNV ENSMUST00000054607:c.C251T:p.T84I 2qH1 NA NA chr2 154893103 TGAxTAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09903 0.099721 0.993072 25 0 0 25.341374 0.8 0.02 -0.087707 2 8 60 237 60 60 0 0 GG 3.3086 11 0 306 0 KEEP - Ahcy YES UVC_2 chr2 155034978 155034978 T C intronic Itch NA NA intronic Itch NA NA intronic ENSMUSG00000027598 NA NA 2qH1 NA NA chr2 155034978 GTGxTTA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668436 0.668523 0.999869 51 0 0 21.099609 0.275862 0.02 -0.254359 21 8 627 247 60 60 0 0 TT 6.315002 21 0 576 0 KEEP + Itch NO UVC_2 chr2 155641633 155641633 T C exonic Mmp24 nonsynonymous SNV NM_010808:c.T1706C:p.V569A exonic Mmp24 nonsynonymous SNV uc008nlj.1:c.T1706C:p.V569A exonic ENSMUSG00000027612 nonsynonymous SNV ENSMUST00000029141:c.T1706C:p.V569A 2qH1 NA NA chr2 155641633 ACGxGCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999956 0.999956 1 220 0 0 7.980368 0.060606 0.02 0.926979 93 6 2697 149 60 60 0 0 TT 31.872327 106 0 2841 0 KEEP + Mmp24 NO UVC_2 chr2 156847258 156847258 G A exonic 9830001H06Rik synonymous SNV NM_001164663:c.C3486T:p.S1162S exonic 9830001H06Rik synonymous SNV uc008nol.2:c.C3486T:p.S1162S exonic ENSMUSG00000055485 synonymous SNV ENSMUST00000069098:c.C3486T:p.S1162S 2qH1 NA NA chr2 156847258 GGAxGAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 88 0 0 67.93366 0.709677 0.02 -0.271479 9 22 262 656 60 60 0 0 GG 15.641066 52 0 1450 0 KEEP - 9830001H06Rik YES UVC_2 chr2 156917343 156917343 C T intronic Tldc2 NA NA intronic Gm1332 NA NA intronic ENSMUSG00000074628 NA NA 2qH1 NA NA chr2 156917343 TTTxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 253 0 0 83.713795 0.313725 0.02 2.880998 70 32 2103 960 60 60 0 0 CC 35.784446 119 0 3381 0 KEEP + Tldc2 YES UVC_2 chr2 157055679 157055679 G T exonic Mroh8 nonsynonymous SNV NM_001039557:c.C1641A:p.S547R exonic 4922505G16Rik nonsynonymous SNV uc008nou.2:c.C1641A:p.S547R exonic ENSMUSG00000074627 nonsynonymous SNV ENSMUST00000099137:c.C1374A:p.S458R 2qH1 NA NA chr2 157055679 GTGxCTG G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 33 0 0 23.563057 0.571429 0.02 -0.122796 6 8 185 239 60 60 0 0 GG 4.477616 15 0 401 0 KEEP - Mroh8 NO UVC_2 chr2 157834160 157834160 G T exonic Tti1 synonymous SNV NM_029282:c.C894A:p.V298V exonic Tti1 synonymous SNV uc008npj.1:c.C894A:p.V298V exonic ENSMUSG00000027650 synonymous SNV ENSMUST00000109522:c.C894A:p.V298V 2qH1 NA NA chr2 157834160 GGAxACA G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 176 0 0 47.191518 0.25974 0.02 1.10954 57 20 1729 568 60 60 0 0 GG 24.367201 81 0 2321 0 KEEP - Tti1 NO UVC_2 chr2 161381325 161381325 G A intronic Ptprt NA NA intronic Ptprt NA NA intronic ENSMUSG00000053141 NA NA 2qH2 NA NA chr2 161381325 GATxGGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 84 0 0 89.446049 0.674419 0.02 -0.377149 14 29 420 874 60 60 0 0 GG 10.223557 34 0 946 0 KEEP - Ptprt YES UVC_2 chr2 164081871 164081871 G T exonic Svs3b nonsynonymous SNV NM_173377:c.C265A:p.L89M exonic Svs3b nonsynonymous SNV uc008nud.1:c.C265A:p.L89M exonic ENSMUSG00000050383 nonsynonymous SNV ENSMUST00000063132:c.C265A:p.L89M 2qH3 "Score=0.958333;Name=No.75421,chr2:164113606" NA chr2 164081871 TCAxTTC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 565 0 11 184.279557 0.331797 0.02 5.666329 145 72 4227 2098 60 60 0 0 GG 80.38859 276 1 7579 24 KEEP - Svs3b NO UVC_2 chr2 164081967 164081967 C T exonic Svs3b nonsynonymous SNV NM_173377:c.G169A:p.E57K exonic Svs3b nonsynonymous SNV uc008nud.1:c.G169A:p.E57K exonic ENSMUSG00000050383 nonsynonymous SNV ENSMUST00000063132:c.G169A:p.E57K 2qH3 "Score=0.958333;Name=No.75421,chr2:164113606" NA chr2 164081967 CCTxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 447 0 0 152.012347 0.312169 0.02 4.011662 130 59 3960 1748 60 60 0 0 CC 65.555041 218 0 6199 0 KEEP - Svs3b YES UVC_2 chr2 165340925 165340925 C G exonic Slc2a10 nonsynonymous SNV NM_130451:c.C1004G:p.A335G exonic Slc2a10 nonsynonymous SNV uc008nxv.1:c.C1004G:p.A335G exonic ENSMUSG00000027661 nonsynonymous SNV ENSMUST00000029196:c.C1004G:p.A335G 2qH3 NA NA chr2 165340925 ATGxCAG C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999804 0.999804 1 200 0 0 40.48315 0.191011 0.02 1.211956 72 17 2088 512 60 60 0 0 CC 25.264023 84 0 2315 0 KEEP + Slc2a10 NO UVC_2 chr2 165942642 165942642 G T intronic Sulf2 NA NA intronic Sulf2 NA NA intronic ENSMUSG00000006800 NA NA 2qH3 NA NA chr2 165942642 TGTxGCC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 124 2 0 86.26333 0.517241 0.02 1.365932 28 30 843 894 60 70 0 0 GG 15.318182 51 0 1398 0 KEEP - Sulf2 NO UVC_2 chr2 168760787 168760787 T C exonic Zfp64 synonymous SNV NM_009564:c.A681G:p.R227R exonic Zfp64 synonymous SNV uc008obj.1:c.A681G:p.R227R exonic ENSMUSG00000027551 synonymous SNV ENSMUST00000045842:c.A681G:p.R227R 2qH3 NA NA chr2 168760787 GGGxCGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 131 0 0 19.226421 0.210526 0.02 -0.333234 30 8 863 239 60 60 0 0 TT 16.513202 55 0 1419 0 KEEP - Zfp64 NO UVC_2 chr2 173545454 173545454 T C intronic 1700010B08Rik NA NA intronic 1700010B08Rik NA NA intronic ENSMUSG00000057047 NA NA 2qH4 NA NA chr2 173545454 GAGxCGA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 108 0 0 18.824982 0.153846 0.02 1.436088 44 8 1322 247 60 60 0 0 TT 12.330914 41 0 1122 0 KEEP + 1700010B08Rik NO UVC_2 chr2 19399437 19399437 A G exonic 4921504E06Rik synonymous SNV NM_027600:c.T1470C:p.T490T exonic 4921504E06Rik synonymous SNV uc008imi.1:c.T1470C:p.T490T exonic ENSMUSG00000026734 synonymous SNV ENSMUST00000062060:c.T1470C:p.T490T 2qA3 NA NA chr2 19399437 ACCxGTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229157 0.229173 0.999931 53 0 0 9.731094 0.266667 0.02 -0.131555 11 4 334 116 60 60 0 0 AA 7.520087 25 0 703 0 KEEP - 4921504E06Rik NO UVC_2 chr2 20710057 20710057 G A exonic Etl4 synonymous SNV NM_001177631:c.G2811A:p.K937K exonic Etl4 synonymous SNV uc008imt.1:c.G1932A:p.K644K exonic ENSMUSG00000036617 synonymous SNV ENSMUST00000114606:c.G1965A:p.K655K 2qA3 NA NA chr2 20710057 GAAxGCA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.259062 0.260965 0.992708 36 2 0 10.201485 0.25 0.02 -0.140341 12 4 368 122 60 60 0 0 GG 3.008359 10 0 288 0 KEEP + Etl4 YES UVC_2 chr2 25077819 25077819 A G UTR3 Tubb4b NA NA UTR3 Tubb2c NA NA UTR3 ENSMUSG00000036752 NA NA 2qA3 "Score=0.9819;Name=No.78300,chr5:7179300" NA chr2 25077819 ACTxAGA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 86 0 0 45.201734 0.484848 0.02 -0.298169 17 16 498 475 60 60 0 0 AA 14.698672 49 0 1281 0 KEEP - Tubb4b NO UVC_2 chr2 25208854 25208854 T C intronic Dpp7 NA NA intronic Dpp7 NA NA intronic ENSMUSG00000026958 NA NA 2qA3 NA NA chr2 25208854 AACxCCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.833904 0.835716 0.997832 57 0 0 38.127006 0.378378 0.02 -0.324323 23 14 674 421 60 60 0 0 TT 4.810659 16 0 438 0 KEEP - Dpp7 NO UVC_2 chr2 25464759 25464759 G T intronic 4921530D09Rik NA NA exonic Kiaa1984 nonsynonymous SNV uc008isv.2:c.C889A:p.H297N ncRNA_intronic ENSMUSG00000052403 NA NA 2qA3 NA NA chr2 25464759 TGTxGCC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73962 0.739671 0.999931 64 0 0 39.454296 0.4375 0.02 -0.280673 18 14 546 423 60 60 0 0 GG 7.520913 25 0 720 0 KEEP - 4921530D09Rik NO UVC_2 chr2 25876992 25876992 G A exonic Ubac1 synonymous SNV NM_133835:c.C63T:p.A21A exonic Ubac1 synonymous SNV uc008itz.2:c.C63T:p.A21A exonic ENSMUSG00000036352 synonymous SNV ENSMUST00000036509:c.C63T:p.A21A 2qA3 NA NA chr2 25876992 GTCxGCT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490234 0.490544 0.999366 48 0 0 24.73063 0.409091 0.02 -0.201684 13 9 368 269 60 60 0 0 GG 5.107171 17 0 430 0 KEEP - Ubac1 YES UVC_2 chr2 26833959 26833959 A T intronic Adamts13 NA NA intronic Adamts13 NA NA intronic ENSMUSG00000014852 NA NA 2qA3 NA NA chr2 26833959 CCCxTAA A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 136 0 0 38.360662 0.258621 0.02 1.383475 43 15 1273 456 60 60 0 0 AA 18.92966 63 0 1672 0 KEEP + Adamts13 NO UVC_2 chr2 26949012 26949012 G A intronic Adamtsl2 NA NA intronic Adamtsl2 NA NA intronic ENSMUSG00000036040 NA NA 2qA3 NA NA chr2 26949012 GGAxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612399 0.612407 0.999988 59 0 0 23.910261 0.346154 0.02 -0.23682 17 9 519 269 60 60 0 0 GG 8.121833 27 0 764 0 KEEP + Adamtsl2 YES UVC_2 chr2 27242039 27242039 C T exonic Vav2 nonsynonymous SNV NM_009500:c.G292A:p.D98N exonic Vav2 nonsynonymous SNV uc008ixh.1:c.G292A:p.D98N exonic ENSMUSG00000009621 nonsynonymous SNV ENSMUST00000056176:c.G292A:p.D98N 2qA3 NA NA chr2 27242039 GGTxGAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 205 0 0 44.22002 0.25 0.02 1.261489 54 18 1354 532 60 60 0 0 CC 29.727932 99 0 2402 0 KEEP - Vav2 YES UVC_2 chr2 27806976 27806976 A C exonic Col5a1 nonsynonymous SNV NM_015734:c.A1088C:p.D363A exonic Col5a1 nonsynonymous SNV uc008ixt.2:c.A1088C:p.D363A exonic ENSMUSG00000026837 nonsynonymous SNV ENSMUST00000028280:c.A1088C:p.D363A 2qA3 NA NA chr2 27806976 CTGxCCA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 113 0 0 39.277531 0.326531 0.02 -0.429432 33 16 979 451 60 60 0 0 AA 15.605626 52 0 1411 0 KEEP + Col5a1 NO UVC_2 chr2 27817588 27817588 T C exonic Col5a1 nonsynonymous SNV NM_015734:c.T1576C:p.F526L exonic Col5a1 nonsynonymous SNV uc008ixt.2:c.T1576C:p.F526L exonic ENSMUSG00000026837 nonsynonymous SNV ENSMUST00000028280:c.T1576C:p.F526L 2qA3 NA NA chr2 27817588 CGGxTTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 168 2 0 53.238483 0.338983 0.02 1.572941 39 20 1117 601 60 60 0 0 TT 22.552945 75 0 2027 0 KEEP + Col5a1 NO UVC_2 chr2 27869637 27869637 G C exonic Col5a1 nonsynonymous SNV NM_015734:c.G4025C:p.G1342A exonic Col5a1 nonsynonymous SNV uc008ixt.2:c.G4025C:p.G1342A exonic ENSMUSG00000026837 nonsynonymous SNV ENSMUST00000028280:c.G4025C:p.G1342A 2qA3 NA NA chr2 27869637 TGGxCTT G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 135 1 0 27.941599 0.181818 0.02 1.304718 54 12 1576 358 60 60 0 0 GG 14.734373 49 0 1335 0 KEEP + Col5a1 NO UVC_2 chr2 29745274 29745274 G C UTR5 Odf2 NA NA UTR5 Odf2 NA NA UTR5 ENSMUSG00000026790 NA NA 2qB NA NA chr2 29745274 CTGxCCA G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195886 0.196312 0.997832 30 0 0 7.173217 0.214286 0.02 -0.122777 11 3 320 89 60 60 0 0 GG 4.81241 16 0 442 0 KEEP + Odf2 NO UVC_2 chr2 31267379 31267379 T A intergenic "Ncs1(dist=116388),Ass1(dist=58411)" NA NA intergenic "Ncs1(dist=116388),Hmcn2(dist=26203)" NA NA exonic ENSMUSG00000055632 nonsynonymous SNV ENSMUST00000113532:c.T8759A:p.V2920E 2qB NA NA chr2 31267379 CTGxGTC T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322107 0.322807 0.997832 35 0 0 39.562619 0.722222 0.02 -0.157725 5 13 146 380 60 60 0 0 TT 4.810653 16 0 423 0 KEEP NA Ncs1 NO UVC_2 chr2 32082423 32082423 T C intronic Prrc2b NA NA intronic Prrc2b NA NA intronic ENSMUSG00000039262 NA NA 2qB NA NA chr2 32082423 GTCxCTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 86 0 0 42.337374 0.432432 0.02 -0.32446 21 16 637 457 60 60 0 0 TT 13.225798 44 0 1217 0 KEEP + Prrc2b NO UVC_2 chr2 33499953 33499953 G C ncRNA_exonic C130021I20Rik NA NA ncRNA_exonic "AK081497,AK147796" NA NA ncRNA_exonic ENSMUSG00000052951 NA NA 2qB NA NA chr2 33499953 TGAxGGG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 106 0 0 35.790731 0.314815 0.02 1.311478 37 17 1103 423 60 60 0 0 GG 12.934026 43 0 1214 0 KEEP + C130021I20Rik NO UVC_2 chr2 34630595 34630595 T C exonic Hspa5 nonsynonymous SNV NM_022310:c.T1247C:p.V416A exonic Hspa5 nonsynonymous SNV uc008jit.2:c.T1247C:p.V416A exonic ENSMUSG00000026864 nonsynonymous SNV ENSMUST00000100171:c.T1247C:p.V416A 2qB NA NA chr2 34630595 TGGxACT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.38494 0.387407 0.993634 38 0 0 15.757587 0.3 0.02 -0.1754 14 6 398 182 60 60 0 0 TT 3.608433 12 0 320 0 KEEP + Hspa5 NO UVC_2 chr2 35028658 35028658 A G exonic Cep110 nonsynonymous SNV NM_030000:c.A4745G:p.Y1582C exonic Cep110 nonsynonymous SNV uc008jjx.1:c.A2663G:p.Y888C exonic ENSMUSG00000057110 nonsynonymous SNV ENSMUST00000136047:c.A2033G:p.Y678C 2qB NA NA chr2 35028658 AGTxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.611079 0.612407 0.997832 47 0 0 14.653683 0.222222 0.02 -0.236748 21 6 589 180 60 60 0 0 AA 4.811714 16 0 431 0 KEEP + Cep110 NO UVC_2 chr2 36106816 36106816 C A exonic Ptgs1 nonsynonymous SNV NM_008969:c.C1754A:p.P585Q exonic Ptgs1 nonsynonymous SNV uc008jll.1:c.C1754A:p.P585Q exonic ENSMUSG00000047250 nonsynonymous SNV ENSMUST00000164028:c.C1412A:p.P471Q 2qB NA NA chr2 36106816 TGCxAGA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 99 1 0 85.542784 0.666667 0.02 -0.368379 14 28 423 838 60 60 0 0 CC 14.40824 48 0 1334 0 KEEP + Ptgs1 NO UVC_2 chr2 37234453 37234453 A G exonic Rc3h2 synonymous SNV NM_001100591:c.T2520C:p.G840G exonic Rc3h2 synonymous SNV uc008jmq.1:c.T2520C:p.G840G exonic ENSMUSG00000075376 synonymous SNV ENSMUST00000100143:c.T2520C:p.G840G 2qB NA NA chr2 37234453 GGTxCCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 129 1 0 24.314153 0.217391 0.02 -0.403421 36 10 1040 300 60 60 0 0 AA 22.252831 74 0 1976 0 KEEP - Rc3h2 NO UVC_2 chr2 37292227 37292227 A G exonic Zbtb26 nonsynonymous SNV NM_199025:c.T283C:p.F95L exonic Zbtb26 nonsynonymous SNV uc008jmu.1:c.T316C:p.F106L exonic ENSMUSG00000050714 nonsynonymous SNV ENSMUST00000067043:c.T283C:p.F95L 2qB NA NA chr2 37292227 GGAxTTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 187 0 0 49.705744 0.298507 0.02 1.304609 47 20 1378 579 60 60 0 0 AA 27.639202 92 0 2474 0 KEEP - Zbtb26 NO UVC_2 chr2 37646643 37646643 G A exonic Crb2 synonymous SNV NM_001163566:c.G1977A:p.T659T exonic Crb2 synonymous SNV uc008jnf.2:c.G1977A:p.T659T exonic ENSMUSG00000035403 synonymous SNV ENSMUST00000050372:c.G1977A:p.T659T 2qB NA NA chr2 37646643 CACxAGC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 113 2 0 60.343143 0.575 0.02 -0.349914 17 23 457 613 60 60 0 0 GG 13.606621 48 0 919 0 KEEP + Crb2 YES UVC_2 chr2 38708273 38708273 T C ncRNA_exonic Mir181a-2 NA NA ncRNA_exonic Mir181a-2 NA NA ncRNA_exonic ENSMUSG00000065423 NA NA 2qB NA NA chr2 38708273 CGCxGTC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.161341 0.162467 0.993072 27 0 0 8.922998 0.307692 0.02 -0.114007 9 4 277 105 60 60 0 0 TT 3.306564 11 0 296 0 KEEP - Mir181a-2 NO UVC_2 chr2 41101559 41101559 T A exonic Lrp1b nonsynonymous SNV NM_053011:c.A5260T:p.N1754Y exonic Lrp1b nonsynonymous SNV uc008jon.1:c.A5260T:p.N1754Y exonic ENSMUSG00000049252 nonsynonymous SNV ENSMUST00000052550:c.A5353T:p.N1785Y 2qB NA NA chr2 41101559 CATxTCC T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 58 0 0 14.364131 0.230769 0.02 -0.228042 20 6 602 176 60 60 0 0 TT 8.721674 29 0 800 0 KEEP - Lrp1b NO UVC_2 chr2 49550339 49550339 G A exonic Kif5c nonsynonymous SNV NM_008449:c.G553A:p.D185N exonic Kif5c nonsynonymous SNV uc008jpy.1:c.G553A:p.D185N exonic ENSMUSG00000026764 nonsynonymous SNV ENSMUST00000028102:c.G553A:p.D185N 2qC1.1 NA NA chr2 49550339 ATCxATG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 76 2 0 41.387014 0.538462 0.02 -0.228001 12 14 328 425 60 60 0 0 GG 12.01146 40 0 1009 0 KEEP + Kif5c YES UVC_2 chr2 51808336 51808336 G A exonic Nmi nonsynonymous SNV NM_001141948:c.C410T:p.S137F exonic Nmi nonsynonymous SNV uc008jqn.2:c.C410T:p.S137F exonic ENSMUSG00000026946 nonsynonymous SNV ENSMUST00000028314:c.C410T:p.S137F 2qC1.1 NA NA chr2 51808336 GCAxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 128 1 0 40.33743 0.301887 0.02 1.409809 37 16 1117 468 60 60 0 0 GG 18.651835 62 0 1784 0 KEEP - Nmi YES UVC_2 chr2 60072560 60072560 T A exonic March7 nonsynonymous SNV NM_020575:c.T1122A:p.F374L exonic March7 nonsynonymous SNV uc008jtx.1:c.T1122A:p.F374L exonic ENSMUSG00000026977 nonsynonymous SNV ENSMUST00000067542:c.T1122A:p.F374L 2qC1.1 NA NA chr2 60072560 TTTxAAC T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641345 0.641347 0.999997 64 0 0 20.14252 0.285714 0.02 -0.245576 20 8 590 236 60 60 0 0 TT 9.021484 30 0 812 0 KEEP + March7 NO UVC_2 chr2 69299305 69299305 G A intronic Lrp2 NA NA intronic Lrp2 NA NA intronic ENSMUSG00000027070 NA NA 2qC2 NA NA chr2 69299305 CGGxAGC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 80 0 0 41.937064 0.416667 0.02 -0.315748 21 15 630 454 60 60 0 0 GG 10.82875 36 0 1012 0 KEEP - Lrp2 YES UVC_2 chr2 69534930 69534930 A G exonic Fastkd1 nonsynonymous SNV NM_177244:c.T1873C:p.F625L exonic Fastkd1 nonsynonymous SNV uc012bwq.1:c.T787C:p.F263L exonic ENSMUSG00000027086 nonsynonymous SNV ENSMUST00000073152:c.T1873C:p.F625L 2qC2 NA NA chr2 69534930 GGAxCTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 67 0 0 20.561077 0.347826 0.02 -0.201683 15 8 442 232 60 60 0 0 AA 10.821388 36 0 969 0 KEEP - Fastkd1 NO UVC_2 chr2 69543473 69543473 G T intronic Fastkd1 NA NA UTR3 Fastkd1 NA NA intronic ENSMUSG00000027086 NA NA 2qC2 NA NA chr2 69543473 AAAxACT G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 144 0 0 43.894243 0.272727 0.02 1.313312 48 18 1465 521 60 60 0 0 GG 17.137038 57 0 1612 0 KEEP - Fastkd1 NO UVC_2 chr2 69550347 69550347 A T exonic Fastkd1 nonsynonymous SNV NM_177244:c.T172A:p.F58I exonic Fastkd1 nonsynonymous SNV uc008jyh.1:c.T172A:p.F58I exonic ENSMUSG00000027086 nonsynonymous SNV ENSMUST00000073152:c.T172A:p.F58I 2qC2 NA NA chr2 69550347 TAAxCGC A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 123 0 0 30.470085 0.27907 0.02 -0.377127 31 12 916 358 60 60 0 0 AA 19.54793 65 0 1764 0 KEEP - Fastkd1 NO UVC_2 chr2 70588497 70588497 T C exonic Tlk1 nonsynonymous SNV NM_172664:c.A634G:p.T212A exonic Tlk1 nonsynonymous SNV uc008jzt.1:c.A634G:p.T212A exonic ENSMUSG00000041997 nonsynonymous SNV ENSMUST00000038584:c.A634G:p.T212A 2qC2 NA NA chr2 70588497 GAGxGAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999998 64 0 0 16.748198 0.291667 0.02 -0.210412 17 7 482 197 60 60 0 0 TT 10.219679 34 0 891 0 KEEP - Tlk1 NO UVC_2 chr2 71664473 71664473 C G exonic Itga6 nonsynonymous SNV NM_001277970:c.C1013G:p.P338R exonic Itga6 nonsynonymous SNV uc008kbe.1:c.C128G:p.P43R exonic ENSMUSG00000027111 nonsynonymous SNV ENSMUST00000028522:c.C1013G:p.P338R 2qC2 NA NA chr2 71664473 CTCxACA C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 77 0 0 17.808837 0.32 0.02 -0.227998 17 8 513 208 60 60 0 0 CC 11.721737 39 0 1081 0 KEEP + Itga6 NO UVC_2 chr2 76650322 76650322 C T exonic Ttn nonsynonymous SNV NM_028004:c.G14944A:p.G4982R exonic Ttn nonsynonymous SNV uc008kfp.1:c.G1864A:p.G622R exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000011934:c.G14944A:p.G4982R 2qC3 NA NA chr2 76650322 GCCxTTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999998 90 0 0 54.087206 0.377358 0.02 1.427371 33 20 970 598 60 60 0 0 CC 9.917301 33 0 916 0 KEEP - Ttn YES UVC_2 chr2 76705449 76705449 T A intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76705449 CTCxATA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 82 0 0 92.155032 0.681818 0.02 -0.394648 14 30 411 898 60 60 0 0 TT 9.324132 31 0 859 0 KEEP - Ttn NO UVC_2 chr2 76706003 76706003 C T intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76706003 TAGxTCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 118 0 0 42.540322 0.309091 0.02 1.409805 38 17 1136 492 60 60 0 0 CC 13.820821 46 0 1266 0 KEEP - Ttn YES UVC_2 chr2 76706005 76706005 C T intronic Ttn NA NA intronic Ttn NA NA intronic ENSMUSG00000051747 NA NA 2qC3 NA NA chr2 76706005 GCTxTCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 118 0 0 41.937275 0.301887 0.02 1.526232 37 16 1134 484 60 60 0 0 CC 13.838044 46 0 1320 0 KEEP - Ttn YES UVC_2 chr2 76752586 76752586 C A intronic Ttn NA NA intronic Ttn NA NA exonic ENSMUSG00000051747 nonsynonymous SNV ENSMUST00000099980:c.G16175T:p.S5392I 2qC3 NA NA chr2 76752586 CTGxTTA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.874453 0.877708 0.996292 74 0 0 27.631837 0.275 0.02 -0.350831 29 11 873 326 60 60 0 0 CC 8.122277 27 0 772 0 KEEP - Ttn NO UVC_2 chr2 76752588 76752588 T C intronic Ttn NA NA intronic Ttn NA NA exonic ENSMUSG00000051747 synonymous SNV ENSMUST00000099980:c.A16173G:p.L5391L 2qC3 NA NA chr2 76752588 GCTxAAA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877705 0.877708 0.999997 75 0 0 28.632173 0.275 0.02 -0.350822 29 11 849 336 60 60 0 0 TT 8.4202 28 0 752 0 KEEP - Ttn NO UVC_2 chr2 76887634 76887634 A C splicing Ccdc141(NM_001025576:exon13:c.1899+2T>G) NA NA splicing "Ccdc141(uc012bxr.1:exon13:c.1899+2T>G,uc012bxs.1:exon13:c.1899+2T>G,uc008kfv.2:exon12:c.1704+2T>G)" NA NA splicing "ENSMUSG00000044033(ENSMUST00000049544:exon13:c.1899+2T>G,ENSMUST00000028406:exon12:c.1704+2T>G,ENSMUST00000164114:exon13:c.1899+2T>G)" NA NA 2qC3 NA NA chr2 76887634 CTCxCCA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.387406 0.387407 0.999997 59 0 0 18.816464 0.35 0.02 -0.175405 13 7 380 211 60 60 0 0 AA 9.322798 31 0 839 0 KEEP - Ccdc141 NO UVC_2 chr2 83781222 83781222 G C exonic Zswim2 synonymous SNV NM_027964:c.C114G:p.G38G exonic Zswim2 synonymous SNV uc008kif.1:c.C114G:p.G38G exonic ENSMUSG00000034552 synonymous SNV ENSMUST00000038223:c.C114G:p.G38G 2qD NA NA chr2 83781222 GGGxCCG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948402 0.948402 1 152 0 0 39.010954 0.3125 0.02 -0.420945 33 15 977 448 60 60 0 0 GG 22.557268 75 0 2067 0 KEEP - Zswim2 NO UVC_2 chr2 84455424 84455424 G A exonic Ctnnd1 synonymous SNV NM_001085449:c.C1122T:p.T374T exonic Ctnnd1 synonymous SNV uc008kiu.1:c.C984T:p.T328T exonic ENSMUSG00000034101 synonymous SNV ENSMUST00000111675:c.C456T:p.T152T 2qD NA NA chr2 84455424 CAGxGTT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926638 0.92664 0.999997 81 0 0 34.255085 0.288889 0.02 -0.394697 32 13 961 398 60 60 0 0 GG 9.625128 32 0 890 0 KEEP - Ctnnd1 YES UVC_2 chr2 86818049 86818049 G A exonic Olfr1100 synonymous SNV NM_146594:c.C903T:p.I301I exonic Olfr1100 synonymous SNV uc008kne.1:c.C903T:p.I301I exonic ENSMUSG00000070875 synonymous SNV ENSMUST00000094913:c.C903T:p.I301I 2qD NA NA chr2 86818049 ATGxATA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 65 0 0 62.037126 0.689655 0.02 -0.254359 9 20 273 603 60 60 0 0 GG 8.422962 28 0 796 0 KEEP - Olfr1100 YES UVC_2 chr2 87053276 87053276 T A exonic Olfr1113 nonsynonymous SNV NM_207565:c.T226A:p.F76I exonic Olfr1113 nonsynonymous SNV uc008knq.1:c.T226A:p.F76I exonic ENSMUSG00000070857 nonsynonymous SNV ENSMUST00000079966:c.T226A:p.F76I 2qD "Score=0.894879;Name=No.75250,chr2:87081742" NA chr2 87053276 TACxTTT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 308 2 0 292.441542 0.723881 0.02 2.700247 37 97 1111 2806 60 60 0 0 TT 43.606664 145 0 4004 0 KEEP + Olfr1113 NO UVC_2 chr2 87149725 87149725 G A exonic Olfr1118 nonsynonymous SNV NM_207632:c.G778A:p.G260R exonic Olfr1118-ps nonsynonymous SNV uc008knt.1:c.G778A:p.G260R exonic ENSMUSG00000089732 nonsynonymous SNV ENSMUST00000090717:c.G778A:p.G260R 2qD NA NA chr2 87149725 GAAxGAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 212 0 0 134.385899 0.60274 0.02 1.350813 29 44 868 1347 60 60 0 0 GG 30.983193 103 0 2906 0 KEEP + Olfr1118 YES UVC_2 chr2 87331031 87331031 G A exonic Pramel7 synonymous SNV NM_178250:c.C816T:p.L272L exonic Pramel7 synonymous SNV uc008koa.1:c.C816T:p.L272L exonic ENSMUSG00000025839 synonymous SNV ENSMUST00000026957:c.C816T:p.L272L 2qD "Score=0.917642;Name=No.8982,chr10:43873246" NA chr2 87331031 AGTxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693666 0.693668 0.999997 70 0 0 52.213622 0.6 0.02 -0.263116 12 18 370 524 60 60 0 0 GG 9.326148 31 0 898 0 KEEP - Pramel7 YES UVC_2 chr2 87708604 87708604 C T exonic Olfr1152 nonsynonymous SNV NM_001011834:c.C455T:p.A152V exonic Olfr1152 nonsynonymous SNV uc008kov.1:c.C455T:p.A152V exonic ENSMUSG00000045225 nonsynonymous SNV ENSMUST00000051058:c.C455T:p.A152V 2qD NA NA chr2 87708604 TTGxCAT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 105 0 0 23.608473 0.2 0.02 -0.438519 40 10 1193 297 60 60 0 0 CC 14.736544 49 0 1341 0 KEEP + Olfr1152 YES UVC_2 chr2 89089061 89089061 G A exonic Olfr1228 synonymous SNV NM_146971:c.C789T:p.V263V exonic Olfr1228 synonymous SNV uc008krd.1:c.C789T:p.V263V exonic ENSMUSG00000075096 synonymous SNV ENSMUST00000099789:c.C789T:p.V263V 2qE1 NA NA chr2 89089061 TGGxACA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 96 0 0 43.640629 0.432432 0.02 -0.324512 21 16 631 470 60 60 0 0 GG 14.944129 50 0 1370 0 KEEP - Olfr1228 YES UVC_2 chr2 89458115 89458115 T C exonic Olfr1248 nonsynonymous SNV NM_146791:c.A233G:p.K78R exonic Olfr1248 nonsynonymous SNV uc008krt.2:c.A233G:p.K78R exonic ENSMUSG00000075080 nonsynonymous SNV ENSMUST00000099770:c.A233G:p.K78R 2qE1 "Score=0.905786;Name=No.75260,chr2:89496677" NA chr2 89458115 AACxTGG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 212 2 55 63.462638 0.363636 0.02 1.413019 42 24 1250 708 36 36 0 0 TT 34.587829 115 0 3201 0 KEEP - Olfr1248 NO UVC_2 chr2 90687751 90687751 A G intronic Mtch2 NA NA intronic Mtch2 NA NA intronic ENSMUSG00000027282 NA NA 2qE1 NA NA chr2 90687751 CCAxCTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 153 0 0 47.2727 0.279412 0.02 1.29581 49 19 1435 557 60 60 0 0 AA 21.651714 72 0 1943 0 KEEP + Mtch2 NO UVC_2 chr2 91452934 91452934 A G exonic Ckap5 nonsynonymous SNV NM_001165989:c.A5095G:p.T1699A exonic Ckap5 nonsynonymous SNV uc008kwf.1:c.A169G:p.T57A exonic ENSMUSG00000040549 nonsynonymous SNV ENSMUST00000111337:c.A4915G:p.T1639A 2qE1 NA NA chr2 91452934 GCAxCAG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995687 0.995687 1 229 0 0 25.083696 0.161765 0.02 1.2958 57 11 1670 329 60 60 0 0 AA 37.283041 124 0 3357 0 KEEP + Ckap5 NO UVC_2 chr3 100860193 100860193 G A exonic Ptgfrn synonymous SNV NM_011197:c.C2025T:p.L675L exonic Ptgfrn synonymous SNV uc008qre.1:c.C2025T:p.L675L exonic ENSMUSG00000027864 synonymous SNV ENSMUST00000102694:c.C2025T:p.L675L 3qF2.2 NA NA chr3 100860193 GGAxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 131 0 0 110.214717 0.606557 0.02 1.357511 24 37 702 1103 60 60 0 0 GG 18.649808 62 0 1762 0 KEEP - Ptgfrn YES UVC_2 chr3 101235188 101235188 G A exonic Igsf3 synonymous SNV NM_207205:c.G894A:p.V298V exonic Igsf3 synonymous SNV uc008qrg.2:c.G894A:p.V298V exonic ENSMUSG00000042035 synonymous SNV ENSMUST00000043983:c.G894A:p.V298V 3qF2.2 NA NA chr3 101235188 GGTxGAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997162 0.997163 0.999999 112 0 0 121.421202 0.605634 0.02 1.368562 28 43 804 1216 60 60 0 0 GG 10.829848 36 0 1032 0 KEEP + Igsf3 YES UVC_2 chr3 101988493 101988493 G A intronic Vangl1 NA NA intronic Vangl1 NA NA intronic ENSMUSG00000027860 NA NA 3qF2.2 NA NA chr3 101988493 AGAxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291816 0.292001 0.999366 37 0 0 16.169058 0.352941 0.02 -0.149112 11 6 339 181 60 60 0 0 GG 5.113269 17 0 482 0 KEEP - Vangl1 YES UVC_2 chr3 103884063 103884063 C A exonic Magi3 stopgain SNV NM_001159354:c.G1024T:p.G342X exonic Magi3 stopgain SNV uc008qua.2:c.G1024T:p.G342X exonic ENSMUSG00000052539 stopgain SNV ENSMUST00000064371:c.G1024T:p.G342X 3qF2.2 "Score=0.992686;Name=No.59095,chr15:25108868" NA chr3 103884063 CTCxATC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 103 0 11 8.634205 0.129032 0.02 -0.271906 27 4 822 119 60 60 0 0 CC 13.83757 46 0 1308 0 KEEP - Magi3 NO UVC_2 chr3 103884064 103884064 A T exonic Magi3 nonsynonymous SNV NM_001159354:c.T1023A:p.D341E exonic Magi3 nonsynonymous SNV uc008qua.2:c.T1023A:p.D341E exonic ENSMUSG00000052539 nonsynonymous SNV ENSMUST00000064371:c.T1023A:p.D341E 3qF2.2 "Score=0.992686;Name=No.59095,chr15:25108868" NA chr3 103884064 TCCxTCT A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 103 0 11 8.434542 0.129032 0.02 -0.271893 27 4 805 117 60 60 0 0 AA 13.834316 46 0 1249 0 KEEP - Magi3 NO UVC_2 chr3 104598330 104598330 T C exonic Mov10 nonsynonymous SNV NM_008619:c.A2836G:p.T946A exonic Mov10 nonsynonymous SNV uc008qum.2:c.A2836G:p.T946A exonic ENSMUSG00000002227 nonsynonymous SNV ENSMUST00000002297:c.A2836G:p.T946A 3qF2.2 "Score=0.939505;Name=No.1188,chr1:4516026" NA chr3 104598330 CGGxATA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552828 0.552887 0.999892 53 0 0 19.511127 0.32 0.02 -0.219158 17 8 479 225 60 60 0 0 TT 6.914678 23 0 603 0 KEEP - Mov10 NO UVC_2 chr3 104628090 104628090 C T intronic Capza1 NA NA intronic Capza1 NA NA intronic ENSMUSG00000070372 NA NA 3qF2.2 NA NA chr3 104628090 GATxAGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 121 0 0 70.604613 0.385714 0.02 1.278277 43 27 1310 780 60 60 0 0 CC 12.928287 43 0 1219 0 KEEP - Capza1 YES UVC_2 chr3 106570820 106570820 G A intronic Cd53 NA NA intronic Cd53 NA NA intronic ENSMUSG00000040747 NA NA 3qF2.3 NA NA chr3 106570820 AGAxGAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043583 0.043787 0.995343 24 0 0 11.83209 0.571429 0.02 -0.06139 3 4 85 120 60 60 0 0 GG 4.211579 14 0 401 0 KEEP - Cd53 YES UVC_2 chr3 108830051 108830051 G A intronic Fam102b NA NA intronic Fam102b NA NA intronic ENSMUSG00000040339 NA NA 3qF3 NA NA chr3 108830051 CAAxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999997 58 0 0 18.815363 0.388889 0.02 -0.157874 11 7 332 207 60 60 0 0 GG 9.616807 32 0 898 0 KEEP - Fam102b YES UVC_2 chr3 112956414 112956414 G A intronic Amy2b NA NA intronic Amy2b NA NA ncRNA_intronic ENSMUSG00000083079 NA NA 3qF3 NA NA chr3 112956414 GTTxGGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 120 0 0 25.144897 0.232558 0.02 -0.377153 33 10 993 305 60 60 0 0 GG 18.948315 63 0 1755 0 KEEP - Amy2b YES UVC_2 chr3 116031474 116031474 G A exonic Cdc14a nonsynonymous SNV NM_001173553:c.C614T:p.T205I exonic Cdc14a nonsynonymous SNV uc012cwq.1:c.C614T:p.T205I exonic ENSMUSG00000033502 nonsynonymous SNV ENSMUST00000106491:c.C614T:p.T205I 3qG1 NA NA chr3 116031474 GGGxTGC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260964 0.260965 0.999997 52 0 0 18.373985 0.4375 0.02 -0.140273 9 7 258 198 60 60 0 0 GG 8.419334 28 0 753 0 KEEP - Cdc14a YES UVC_2 chr3 121985270 121985270 T C exonic Dnttip2 synonymous SNV NM_153806:c.T1932C:p.G644G exonic Dnttip2 synonymous SNV uc008rep.1:c.T1932C:p.G644G exonic ENSMUSG00000039756 synonymous SNV ENSMUST00000035776:c.T1932C:p.G644G 3qG1 NA NA chr3 121985270 CGGxAAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457701 0.457757 0.999879 51 0 0 9.180175 0.181818 0.02 -0.192934 18 4 517 118 60 60 0 0 TT 6.615505 22 0 586 0 KEEP + Dnttip2 NO UVC_2 chr3 126645571 126645571 G A exonic Ank2 nonsynonymous SNV NM_001034168:c.C419T:p.S140F exonic Ank2 nonsynonymous SNV uc008rgt.1:c.C419T:p.S140F exonic ENSMUSG00000032826 nonsynonymous SNV ENSMUST00000106395:c.C6590T:p.S2197F 3qG2 NA NA chr3 126645571 GTGxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 140 0 0 57.694701 0.30137 0.02 1.251902 51 22 1549 666 60 60 0 0 GG 16.509078 55 0 1523 0 KEEP - Ank2 YES UVC_2 chr3 129002096 129002096 T G intronic Enpep NA NA intronic Enpep NA NA intronic ENSMUSG00000028024 NA NA 3qG3 NA NA chr3 129002096 GAGxACT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.488823 0.490544 0.99649 45 0 0 6.466268 0.130435 0.02 -0.201684 20 3 573 89 60 60 0 0 TT 4.510803 15 0 402 0 KEEP - Enpep NO UVC_2 chr3 130252146 130252146 A G exonic Col25a1 synonymous SNV NM_198711:c.A1053G:p.G351G exonic Col25a1 synonymous SNV uc008riz.1:c.A480G:p.G160G exonic ENSMUSG00000058897 synonymous SNV ENSMUST00000077479:c.A645G:p.G215G 3qG3 NA NA chr3 130252146 TGGxGCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641259 0.641347 0.999863 56 2 0 41.075192 0.518519 0.02 -0.245248 13 14 371 425 60 60 0 0 AA 6.014677 20 0 547 0 KEEP + Col25a1 NO UVC_2 chr3 130337500 130337500 C T exonic Etnppl nonsynonymous SNV NM_027907:c.C1405T:p.L469F exonic Agxt2l1 nonsynonymous SNV uc008rjb.2:c.C1405T:p.L469F exonic ENSMUSG00000019232 nonsynonymous SNV ENSMUST00000072271:c.C1405T:p.L469F 3qG3 NA NA chr3 130337500 AACxTTA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.076843 0.077336 0.993634 27 0 0 8.243486 0.333333 0.02 -0.078943 6 3 184 93 60 60 0 0 CC 3.610047 12 0 346 0 KEEP + Etnppl YES UVC_2 chr3 142224696 142224696 G T intronic Gbp3 NA NA intronic "Gbp1,Gbp3" NA NA intronic ENSMUSG00000028268 NA NA 3qH1 NA NA chr3 142224696 CTGxGTT G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.19488 0.196312 0.992708 27 0 0 12.822375 0.357143 0.02 -0.12279 9 5 273 144 60 60 0 0 GG 3.008038 10 0 281 0 KEEP + Gbp3 NO UVC_2 chr3 142267034 142267034 C T intronic Gbp2b NA NA intronic Gbp1 NA NA intronic ENSMUSG00000028269 NA NA 3qH1 NA NA chr3 142267034 TTCxTTA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818465 0.818465 1 108 0 0 42.54384 0.416667 0.02 -0.315566 21 15 615 460 60 60 0 0 CC 16.532602 55 0 1541 0 KEEP + Gbp2b YES UVC_2 chr3 154749690 154749690 T C exonic Fpgt nonsynonymous SNV NM_029330:c.A1663G:p.I555V exonic Fpgt nonsynonymous SNV uc008ruu.1:c.A1663G:p.I555V exonic ENSMUSG00000053870 nonsynonymous SNV ENSMUST00000066568:c.A1663G:p.I555V 3qH4 NA NA chr3 154749690 GGAxGGA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 80 0 0 25.887717 0.354839 0.02 -0.271815 20 11 588 294 60 60 0 0 TT 12.628869 42 0 1120 0 KEEP - Fpgt NO UVC_2 chr3 15543039 15543039 C T exonic Sirpb1b synonymous SNV NM_001173460:c.G645A:p.L215L exonic Sirpb1b synonymous SNV uc008oqy.1:c.G564A:p.L188L exonic ENSMUSG00000078781 synonymous SNV ENSMUST00000091319:c.G645A:p.L215L 3qA1 "Score=0.971974;Name=No.81402,chr3:15714059" NA chr3 15543039 TTCxAAC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 194 0 18 94.829739 0.4375 0.02 1.290198 45 35 1358 1020 60 60 0 0 CC 26.756671 89 0 2499 0 KEEP - Sirpb1b YES UVC_2 chr3 157209600 157209600 T C intronic Zranb2 NA NA intronic Zranb2 NA NA intronic ENSMUSG00000028180 NA NA 3qH4 NA NA chr3 157209600 TAGxGCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423422 0.423478 0.999869 53 0 0 17.03395 0.333333 0.02 -0.18417 14 7 417 195 60 60 0 0 TT 6.315702 21 0 570 0 KEEP + Zranb2 NO UVC_2 chr3 159572664 159572664 T C exonic Wls nonsynonymous SNV NM_026582:c.T851C:p.V284A exonic Wls nonsynonymous SNV uc008rwc.1:c.T851C:p.V284A exonic ENSMUSG00000028173 nonsynonymous SNV ENSMUST00000068952:c.T851C:p.V284A 3qH4 NA NA chr3 159572664 CTGxGGA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999768 0.999768 1 167 1 0 77.307156 0.363636 0.02 1.120511 56 32 1654 871 60 60 0 0 TT 18.945789 63 0 1693 0 KEEP + Wls NO UVC_2 chr3 22114202 22114202 A T UTR3 Tbl1xr1 NA NA UTR3 Tbl1xr1 NA NA UTR3 ENSMUSG00000027630 NA NA 3qA3 NA NA chr3 22114202 AGTxTAT A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948316 0.948402 0.999909 75 0 0 61.818615 0.458333 0.02 -0.420956 26 22 736 657 60 60 0 0 AA 7.216117 24 0 628 0 KEEP + Tbl1xr1 NO UVC_2 chr3 27955501 27955501 T A intronic Pld1 NA NA intronic Pld1 NA NA intronic ENSMUSG00000027695 NA NA 3qA3 NA NA chr3 27955501 TTTxACC T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.351366 0.353947 0.992708 30 0 0 12.731352 0.263158 0.02 -0.166601 14 5 383 151 60 60 0 0 TT 3.00763 10 0 274 0 KEEP + Pld1 NO UVC_2 chr3 32635630 32635630 C T exonic Mrpl47 nonsynonymous SNV NM_029017:c.G32A:p.R11K exonic Mrpl47 nonsynonymous SNV uc008owp.2:c.G32A:p.R11K exonic ENSMUSG00000037531 nonsynonymous SNV ENSMUST00000043966:c.G32A:p.R11K 3qA3 NA NA chr3 32635630 CTTxTAC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 44 2 0 9.563013 0.210526 0.02 -0.166633 15 4 445 119 60 37 0 0 CC 5.414696 18 0 514 0 KEEP - Mrpl47 YES UVC_2 chr3 32635643 32635643 C G exonic Mrpl47 nonsynonymous SNV NM_029017:c.G19C:p.V7L exonic Mrpl47 nonsynonymous SNV uc008owp.2:c.G19C:p.V7L exonic ENSMUSG00000037531 nonsynonymous SNV ENSMUST00000043966:c.G19C:p.V7L 3qA3 NA NA chr3 32635643 CCAxTAG C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.386047 0.387407 0.99649 39 2 0 9.164245 0.2 0.02 -0.175343 16 4 455 116 60 37 0 0 CC 4.511758 15 0 418 0 KEEP - Mrpl47 NO UVC_2 chr3 32635654 32635654 G A exonic Mrpl47 nonsynonymous SNV NM_029017:c.C8T:p.A3V exonic Mrpl47 nonsynonymous SNV uc008owp.2:c.C8T:p.A3V exonic ENSMUSG00000037531 nonsynonymous SNV ENSMUST00000043966:c.C8T:p.A3V 3qA3 NA NA chr3 32635654 GTCxCAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.385234 0.387407 0.994391 37 2 0 9.171468 0.2 0.02 -0.17475 16 4 400 116 60 37 0 0 GG 3.909238 13 0 350 0 KEEP - Mrpl47 YES UVC_2 chr3 36537380 36537380 C T exonic Trpc3 nonsynonymous SNV NM_019510:c.G2384A:p.R795K exonic "Trpc3,trp3" nonsynonymous SNV uc008ozu.1:c.G458A:p.R153K exonic ENSMUSG00000027716 nonsynonymous SNV ENSMUST00000029271:c.G2384A:p.R795K 3qB NA NA chr3 36537380 AGTxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 196 2 0 135.744506 0.575 0.02 1.190512 34 46 1055 1375 60 60 0 0 CC 26.164486 87 0 2478 0 KEEP - Trpc3 YES UVC_2 chr3 49560581 49560581 A G exonic Pcdh18 nonsynonymous SNV NM_130448:c.T206C:p.M69T exonic Pcdh18 nonsynonymous SNV uc008pdg.2:c.T185C:p.M62T exonic ENSMUSG00000037892 nonsynonymous SNV ENSMUST00000035931:c.T206C:p.M69T 3qC NA NA chr3 49560581 GGCxTGG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 232 1 0 19.05601 0.166667 0.02 1.116802 55 11 1591 267 60 60 0 0 AA 42.652503 142 0 3747 0 KEEP - Pcdh18 NO UVC_2 chr3 51070763 51070763 A G exonic Elf2 synonymous SNV NM_023502:c.T264C:p.N88N exonic "ELF2,Elf2" synonymous SNV uc008pdo.1:c.T84C:p.N28N exonic ENSMUSG00000037174 synonymous SNV ENSMUST00000108051:c.T84C:p.N28N 3qC NA NA chr3 51070763 AGCxTTA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 131 2 0 29.403448 0.224138 0.02 1.284877 45 13 1320 366 60 60 0 0 AA 15.917216 53 0 1394 0 KEEP - Elf2 NO UVC_2 chr3 53393701 53393701 T A exonic Frem2 nonsynonymous SNV NM_172862:c.A5313T:p.E1771D exonic Frem2 nonsynonymous SNV uc008pey.1:c.A5313T:p.E1771D exonic ENSMUSG00000037016 nonsynonymous SNV ENSMUST00000091137:c.A5313T:p.E1771D 3qC NA NA chr3 53393701 GTCxTCG T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522139 0.522161 0.999957 62 1 0 27.090458 0.416667 0.02 -0.210502 14 10 428 294 60 60 0 0 TT 7.820698 26 0 727 0 KEEP - Frem2 NO UVC_2 chr3 59014013 59014013 G A exonic P2ry13 nonsynonymous SNV NM_028808:c.C265T:p.L89F exonic P2ry13 nonsynonymous SNV uc008piq.2:c.C265T:p.L89F exonic ENSMUSG00000036362 nonsynonymous SNV ENSMUST00000040622:c.C265T:p.L89F 3qD NA NA chr3 59014013 CAAxGTG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739669 0.739671 0.999997 68 0 0 14.658026 0.1875 0.02 -0.280669 26 6 780 185 60 60 0 0 GG 8.422353 28 0 786 0 KEEP + P2ry13 YES UVC_2 chr3 59134108 59134108 T C exonic Igsf10 nonsynonymous SNV NM_001162884:c.A2573G:p.D858G exonic Igsf10 nonsynonymous SNV uc008piu.2:c.A2573G:p.D858G exonic ENSMUSG00000036334 nonsynonymous SNV ENSMUST00000039419:c.A2573G:p.D858G 3qD NA NA chr3 59134108 AAAxCAG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 133 0 0 36.664169 0.211268 0.02 1.269676 56 15 1632 454 60 60 0 0 TT 15.012593 50 0 1362 0 KEEP - Igsf10 NO UVC_2 chr3 64210094 64210094 T A exonic Vmn2r4 nonsynonymous SNV NM_001104615:c.A1120T:p.I374F exonic Vmn2r4 nonsynonymous SNV uc009vcl.1:c.A1120T:p.I374F exonic ENSMUSG00000092049 nonsynonymous SNV ENSMUST00000170280:c.A1120T:p.I374F 3qE1 "Score=0.951111;Name=No.81594,chr3:64518136" NA chr3 64210094 GGAxAGA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 184 0 0 167.47212 0.643678 0.02 1.129392 31 56 898 1654 60 60 0 0 TT 26.462454 88 0 2350 0 KEEP - Vmn2r4 NO UVC_2 chr3 64307689 64307689 G A exonic Vmn2r5 nonsynonymous SNV NM_001104618:c.C1118T:p.P373L exonic Vmn2r5 nonsynonymous SNV uc009vcm.1:c.C1118T:p.P373L exonic ENSMUSG00000068999 nonsynonymous SNV ENSMUST00000170270:c.C1118T:p.P373L 3qE1 "Score=0.981182;Name=No.81601,chr3:64415719" NA chr3 64307689 TCAxGTA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 411 0 0 131.051459 0.324503 0.02 4.451043 102 49 3088 1490 60 60 0 0 GG 63.773163 212 0 6049 0 KEEP - Vmn2r5 YES UVC_2 chr3 69822557 69822557 A G exonic Otol1 nonsynonymous SNV NM_001018031:c.A142G:p.S48G exonic Otol1 nonsynonymous SNV uc008pmo.2:c.A142G:p.S48G exonic ENSMUSG00000027788 nonsynonymous SNV ENSMUST00000053013:c.A142G:p.S48G 3qE2 NA NA chr3 69822557 TCCxGTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 87 2 0 12.30226 0.25 0.02 -0.210426 18 6 548 153 60 60 0 0 AA 15.941596 53 0 1474 0 KEEP + Otol1 NO UVC_2 chr3 79404323 79404323 T C splicing Ppid(NM_026352:exon7:c.894+2T>C) NA NA splicing Ppid(uc008pnp.1:exon7:c.894+2T>C) NA NA splicing ENSMUSG00000027804(ENSMUST00000029382:exon7:c.894+2T>C) NA NA 3qE3 NA NA chr3 79404323 AGGxAAG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 151 4 0 55.231487 0.375 0.02 1.401191 35 21 982 613 70 60 0 0 TT 22.250025 74 0 1948 0 KEEP + Ppid NO UVC_2 chr3 80535944 80535944 A G intronic Gria2 NA NA intronic Gria2 NA NA intronic ENSMUSG00000033981 NA NA 3qE3 NA NA chr3 80535944 AAAxCAG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 83 0 0 40.517709 0.333333 0.02 -0.394688 30 15 891 458 60 60 0 0 AA 9.324605 31 0 865 0 KEEP - Gria2 NO UVC_2 chr3 80544973 80544973 A C exonic Gria2 nonsynonymous SNV NM_001039195:c.T377G:p.I126S exonic Gria2 nonsynonymous SNV uc008pnz.1:c.T236G:p.I79S exonic ENSMUSG00000033981 nonsynonymous SNV ENSMUST00000075316:c.T377G:p.I126S 3qE3 NA NA chr3 80544973 TGGxTGA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 92 0 0 22.680855 0.243243 0.02 -0.324516 28 9 828 273 60 60 0 0 AA 13.834991 46 0 1260 0 KEEP - Gria2 NO UVC_2 chr3 80715891 80715891 A T exonic Glrb nonsynonymous SNV NM_010298:c.T121A:p.S41T exonic Glrb nonsynonymous SNV uc012cqq.1:c.T121A:p.S41T exonic ENSMUSG00000028020 nonsynonymous SNV ENSMUST00000165668:c.T121A:p.S41T 3qE3 NA NA chr3 80715891 ACGxTGG A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.99986 44 0 0 14.706752 0.285714 0.02 -0.184177 15 6 443 173 60 60 0 0 AA 5.714085 19 0 517 0 KEEP - Glrb NO UVC_2 chr3 84781486 84781486 T C UTR3 Fbxw7 NA NA UTR3 Fbxw7 NA NA UTR3 ENSMUSG00000028086 NA NA 3qF1 NA NA chr3 84781486 TTGxCCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909067 0.909069 0.999998 87 0 0 11.176773 0.116279 0.02 -0.377106 38 5 1108 155 60 60 0 0 TT 10.193018 34 0 908 0 KEEP - Fbxw7 NO UVC_2 chr3 87194188 87194188 G A intronic Fcrl1 NA NA intronic Fcrl1 NA NA intronic ENSMUSG00000059994 NA NA 3qF1 NA NA chr3 87194188 TAAxCCG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582929 0.58293 0.999997 59 2 0 25.084982 0.473684 0.02 -0.227999 10 9 287 265 60 60 0 0 GG 8.99743 30 0 816 0 KEEP + Fcrl1 YES UVC_2 chr3 88699633 88699633 A G exonic Gon4l nonsynonymous SNV NM_027389:c.A3628G:p.T1210A exonic Gon4l nonsynonymous SNV uc008pxb.1:c.A3016G:p.T1006A exonic ENSMUSG00000054199 nonsynonymous SNV ENSMUST00000107496:c.A349G:p.T117A 3qF1 "Score=0.981023;Name=No.81678,chr3:88589362" NA chr3 88699633 GTGxCAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 240 1 96 37.625786 0.267857 0.02 1.302384 41 15 1200 446 36 36 0 0 AA 34.888576 116 0 3187 0 KEEP + Gon4l NO UVC_2 chr3 89231024 89231024 T C intronic Shc1 NA NA intronic Shc1 NA NA intronic ENSMUSG00000042626 NA NA 3qF1 "Score=0.980283;Name=No.70154,chr18:8415288" NA chr3 89231024 CCGxTGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 134 0 0 25.617824 0.189655 0.02 1.383497 47 11 1386 326 60 60 0 0 TT 19.845317 66 0 1784 0 KEEP + Shc1 NO UVC_2 chr3 89564885 89564885 G A exonic Chrnb2 synonymous SNV NM_009602:c.C1044T:p.F348F exonic Chrnb2 synonymous SNV uc008qaa.2:c.C1044T:p.F348F exonic ENSMUSG00000027950 synonymous SNV ENSMUST00000029562:c.C1044T:p.F348F 3qF1 NA NA chr3 89564885 CAGxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99911 0.99911 1 165 0 0 84.810402 0.392405 0.02 1.199365 48 31 1447 930 60 60 0 0 GG 19.549041 65 0 1841 0 KEEP - Chrnb2 YES UVC_2 chr3 89756611 89756611 G A exonic Atp8b2 synonymous SNV NM_001081182:c.C1020T:p.I340I exonic Atp8b2 synonymous SNV uc008qah.1:c.C162T:p.I54I exonic ENSMUSG00000060671 synonymous SNV ENSMUST00000069805:c.C1077T:p.I359I 3qF1 NA NA chr3 89756611 TGAxATG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918168 0.918171 0.999997 83 1 0 30.729914 0.272727 0.02 -0.38591 32 12 961 362 60 60 0 0 GG 8.722936 29 0 826 0 KEEP - Atp8b2 YES UVC_2 chr3 89825237 89825237 T A exonic Ubap2l nonsynonymous SNV NM_001165987:c.A1415T:p.D472V exonic Ubap2l nonsynonymous SNV uc008qar.1:c.A128T:p.D43V exonic ENSMUSG00000042520 nonsynonymous SNV ENSMUST00000080538:c.A1415T:p.D472V 3qF1 NA NA chr3 89825237 TTGxCTG T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 85 1 0 13.321815 0.166667 0.02 -0.315735 30 6 886 175 60 60 0 0 TT 10.821322 36 0 967 0 KEEP - Ubap2l NO UVC_2 chr3 92388274 92388274 G T exonic Smcp unknown UNKNOWN exonic Smcp unknown UNKNOWN exonic ENSMUSG00000074435 nonsynonymous SNV ENSMUST00000098888:c.C187A:p.P63T 3qF1 NA NA chr3 92388274 CTGxACA G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 169 0 0 13.589256 0.094595 0.02 1.144564 67 7 2028 203 60 60 0 0 GG 22.540467 75 0 2098 0 KEEP - Smcp NO UVC_2 chr3 93248220 93248220 T C exonic Tchh synonymous SNV NM_001163098:c.T1044C:p.R348R exonic Tchh synonymous SNV uc012cti.1:c.T1044C:p.R348R exonic ENSMUSG00000052415 synonymous SNV ENSMUST00000064257:c.T1044C:p.R348R 3qF2.1 NA NA chr3 93248220 GCGxGAG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 127 2 1 39.694579 0.435897 0.02 -0.350618 22 17 642 432 60 60 0 0 TT 17.17073 65 1 1739 22 KEEP + Tchh NO UVC_2 chr3 94239985 94239985 C G exonic Oaz3 unknown UNKNOWN exonic Oaz3 nonsynonymous SNV uc008qgh.2:c.G227C:p.C76S exonic ENSMUSG00000028141 nonsynonymous SNV ENSMUST00000029787:c.G230C:p.C77S 3qF2.1 NA NA chr3 94239985 AGGxAGG C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 160 0 0 140.304342 0.597403 0.02 1.315824 31 46 905 1409 60 60 0 0 CC 21.35695 71 0 2017 0 KEEP - Oaz3 NO UVC_2 chr3 94578302 94578302 G A exonic Cgn synonymous SNV NM_001037711:c.C1404T:p.L468L exonic Cgn synonymous SNV uc008qgy.2:c.C1404T:p.L468L exonic ENSMUSG00000068876 synonymous SNV ENSMUST00000090846:c.C1404T:p.L468L 3qF2.1 NA NA chr3 94578302 TAAxAGT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 169 2 0 61.816016 0.365079 0.02 1.339598 40 23 1229 688 60 60 0 0 GG 22.863505 76 0 2187 0 KEEP - Cgn YES UVC_2 chr3 96592594 96592594 C T exonic Rnf115 nonsynonymous SNV NM_026406:c.C772T:p.P258S exonic Rnf115 nonsynonymous SNV uc008qoe.2:c.C772T:p.P258S exonic ENSMUSG00000028098 nonsynonymous SNV ENSMUST00000029740:c.C772T:p.P258S 3qF2.1 NA NA chr3 96592594 GTGxCCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 102 0 0 50.519189 0.580645 0.02 -0.280577 13 18 386 511 60 60 0 0 CC 15.941618 53 0 1473 0 KEEP + Rnf115 YES UVC_2 chr3 97011099 97011099 G A exonic Bcl9 nonsynonymous SNV NM_029933:c.C3131T:p.P1044L exonic Bcl9 nonsynonymous SNV uc008qos.1:c.C3131T:p.P1044L exonic ENSMUSG00000038256 nonsynonymous SNV ENSMUST00000166341:c.C3131T:p.P1044L 3qF2.1 NA NA chr3 97011099 TTGxGCG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423459 0.423478 0.999957 55 0 0 50.824562 0.761905 0.02 -0.184189 5 16 149 482 60 60 0 0 GG 7.724248 26 0 684 0 KEEP - Bcl9 YES UVC_2 chr3 97398011 97398011 A G exonic Chd1l nonsynonymous SNV NM_026539:c.T641C:p.V214A exonic Chd1l nonsynonymous SNV uc008qow.1:c.T641C:p.V214A exonic ENSMUSG00000028089 nonsynonymous SNV ENSMUST00000029730:c.T641C:p.V214A 3qF2.2 NA NA chr3 97398011 TCCxCGA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865624 0.865745 0.999859 61 0 0 11.598447 0.153846 0.02 -0.341918 33 6 953 160 60 60 0 0 AA 5.403507 18 0 468 0 KEEP - Chd1l NO UVC_2 chr4 111599797 111599797 A G exonic Skint8 nonsynonymous SNV NM_001100466:c.A14G:p.E5G exonic Skint8 nonsynonymous SNV uc008udl.1:c.A14G:p.E5G exonic ENSMUSG00000078599 nonsynonymous SNV ENSMUST00000106572:c.A14G:p.E5G 4qD1 NA NA chr4 111599797 CTGxGTT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999984 0.999984 1 340 4 0 82.513901 0.307692 0.02 2.963474 72 32 2170 951 60 60 0 0 AA 57.108088 190 0 5279 0 KEEP + Skint8 NO UVC_2 chr4 116673216 116673216 T G exonic Hectd3 synonymous SNV NM_175244:c.T1740G:p.G580G exonic Hectd3 synonymous SNV uc008uht.1:c.T1740G:p.G580G exonic ENSMUSG00000046861 synonymous SNV ENSMUST00000050067:c.T1740G:p.G580G 4qD1 NA NA chr4 116673216 TGGxGAG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 74 0 0 31.859656 0.458333 0.02 -0.210491 13 11 374 338 60 60 0 0 TT 10.553724 37 1 995 5 KEEP + Hectd3 NO UVC_2 chr4 118900684 118900684 T C exonic AU022252 nonsynonymous SNV NM_001012400:c.A230G:p.K77R exonic AU022252 nonsynonymous SNV uc008ulo.2:c.A230G:p.K77R exonic ENSMUSG00000078584 nonsynonymous SNV ENSMUST00000141112:c.A230G:p.K77R 4qD2.1 NA NA chr4 118900684 AGCxTGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.07733 0.077336 0.999931 42 0 0 11.623071 0.444444 0.02 -0.078944 5 4 154 124 60 60 0 0 TT 7.519424 25 0 692 0 KEEP - AU022252 NO UVC_2 chr4 118917093 118917093 C T intronic Lepre1 NA NA intronic Lepre1 NA NA intronic ENSMUSG00000028641 NA NA 4qD2.1 NA NA chr4 118917093 AATxCAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 90 2 0 90.410251 0.931034 0.02 -0.26278 2 27 61 807 60 60 0 0 CC 15.621578 52 0 1414 0 KEEP + Lepre1 YES UVC_2 chr4 120208395 120208395 T G exonic Slfnl1 nonsynonymous SNV NM_177570:c.T1078G:p.S360A exonic Slfnl1 nonsynonymous SNV uc012dkj.1:c.T1075G:p.S359A exonic ENSMUSG00000047518 nonsynonymous SNV ENSMUST00000062990:c.T1078G:p.S360A 4qD2.2 NA NA chr4 120208395 CTGxCGG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 127 0 0 55.237268 0.465116 0.02 -0.377098 23 20 683 586 60 60 0 0 TT 19.850521 66 0 1813 0 KEEP + Slfnl1 NO UVC_2 chr4 123132202 123132202 A G intronic Macf1 NA NA intronic Macf1 NA NA intronic ENSMUSG00000028649 NA NA 4qD2.2 NA NA chr4 123132202 ACTxCTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09971 0.099721 0.999892 39 0 0 8.480317 0.3 0.02 -0.087635 7 3 190 97 70 60 0 0 AA 6.90697 23 0 583 0 KEEP - Macf1 NO UVC_2 chr4 128422328 128422328 A G exonic Phc2 nonsynonymous SNV NM_001195083:c.A236G:p.D79G exonic Phc2 nonsynonymous SNV uc008uvk.2:c.A236G:p.D79G exonic ENSMUSG00000028796 nonsynonymous SNV ENSMUST00000106079:c.A236G:p.D79G 4qD2.2 NA NA chr4 128422328 AGGxCCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229145 0.229173 0.999879 40 0 0 13.039131 0.333333 0.02 -0.131558 10 5 294 148 60 60 0 0 AA 6.616621 22 0 601 0 KEEP + Phc2 NO UVC_2 chr4 129167831 129167831 G A exonic Tssk3 nonsynonymous SNV NM_080442:c.C20T:p.S7F exonic Tssk3 nonsynonymous SNV uc008uxc.1:c.C20T:p.S7F exonic ENSMUSG00000000411 nonsynonymous SNV ENSMUST00000000421:c.C20T:p.S7F 4qD2.2 NA NA chr4 129167831 TTGxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.22917 0.229173 0.999988 49 0 0 19.739243 0.466667 0.02 -0.13153 8 7 234 209 60 60 0 0 GG 8.119869 27 0 752 0 KEEP - Tssk3 YES UVC_2 chr4 129631745 129631745 G C intergenic "E330017L17Rik(dist=45505),1700003M07Rik(dist=5873)" NA NA intergenic "AK054344(dist=45369),AK005651(dist=5873)" NA NA intronic ENSMUSG00000028784 NA NA 4qD2.2 NA NA chr4 129631745 CCAxTTG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 154 2 0 36.42896 0.318182 0.02 -0.38585 30 14 874 417 60 60 0 0 GG 25.564794 85 0 2331 0 KEEP NA E330017L17Rik NO UVC_2 chr4 131335096 131335096 T C intronic Ptpru NA NA intronic Ptpru NA NA intronic ENSMUSG00000028909 NA NA 4qD2.3 NA NA chr4 131335096 CTGxGGA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.522157 0.522161 0.999992 76 0 0 39.239763 0.625 0.02 -0.210327 9 15 263 390 60 60 0 0 TT 12.025146 40 0 1070 0 KEEP - Ptpru NO UVC_2 chr4 131800881 131800881 T A intronic Gmeb1 NA NA intronic Gmeb1 NA NA ncRNA_exonic ENSMUSG00000084105 NA NA 4qD2.3 NA NA chr4 131800881 TTTxAAG T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 99 15 0 25.857971 0.344828 0.02 -0.38587 19 10 554 292 60 60 0 0 TT 15.638643 52 0 1410 0 KEEP - Gmeb1 NO UVC_2 chr4 131923823 131923823 A G exonic Phactr4 nonsynonymous SNV NM_001161797:c.T1649C:p.L550P exonic Phactr4 nonsynonymous SNV uc008vbh.2:c.T1649C:p.L550P exonic ENSMUSG00000066043 nonsynonymous SNV ENSMUST00000084170:c.T1649C:p.L550P 4qD2.3 NA NA chr4 131923823 ATCxGCG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 142 2 0 30.219126 0.333333 0.02 -0.34201 26 13 781 348 60 60 0 0 AA 24.959384 83 0 2250 0 KEEP - Phactr4 NO UVC_2 chr4 134881148 134881148 T C exonic Srrm1 nonsynonymous SNV NM_001130477:c.A1829G:p.Y610C exonic Srrm1 nonsynonymous SNV uc008vgg.2:c.A1577G:p.Y526C exonic ENSMUSG00000028809 nonsynonymous SNV ENSMUST00000105861:c.A1802G:p.Y601C 4qD3 NA NA chr4 134881148 GAGxATC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 45 0 0 27.209057 0.692308 0.02 -0.113992 4 9 107 264 60 60 0 0 TT 8.684061 29 0 738 0 KEEP - Srrm1 NO UVC_2 chr4 135607233 135607233 A G intronic Rpl11 NA NA UTR3 Rpl11 NA NA intronic ENSMUSG00000059291 NA NA 4qD3 NA NA chr4 135607233 AGAxGTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 239 1 0 67.930185 0.390625 0.02 1.330836 39 25 1190 746 60 60 0 0 AA 39.404159 131 0 3676 0 KEEP - Rpl11 NO UVC_2 chr4 135895890 135895890 A G exonic Hnrnpr nonsynonymous SNV NM_001277122:c.A1543G:p.N515D exonic Hnrnpr nonsynonymous SNV uc008via.1:c.A1543G:p.N515D exonic ENSMUSG00000066037 nonsynonymous SNV ENSMUST00000084219:c.A1846G:p.N616D 4qD3 "Score=0.983883;Name=No.2014,chr1:78779072" NA chr4 135895890 TACxATA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 99 1 32 6.511042 0.166667 0.02 -0.16664 15 3 453 86 36 29 0 0 AA 17.745024 59 0 1618 0 KEEP + Hnrnpr NO UVC_2 chr4 137114961 137114961 A G intronic Hspg2 NA NA intronic Hspg2 NA NA intronic ENSMUSG00000028763 NA NA 4qD3 NA NA chr4 137114961 GGTxGGG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641289 0.641347 0.999909 53 0 0 26.755 0.392857 0.02 -0.244847 17 11 521 297 60 60 0 0 AA 7.217381 24 0 648 0 KEEP + Hspg2 NO UVC_2 chr4 137743967 137743967 A C exonic Eif4g3 nonsynonymous SNV NM_001256195:c.A3673C:p.T1225P exonic Eif4g3 nonsynonymous SNV uc008vkf.1:c.A331C:p.T111P exonic ENSMUSG00000028760 nonsynonymous SNV ENSMUST00000140796:c.A1978C:p.T660P 4qD3 NA NA chr4 137743967 GCCxCGC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490475 0.490544 0.999859 47 0 0 9.194995 0.173913 0.02 -0.201731 19 4 570 119 60 60 0 0 AA 5.41363 18 0 491 0 KEEP + Eif4g3 NO UVC_2 chr4 141593464 141593464 T C exonic Tmem51 nonsynonymous SNV NM_145402:c.A197G:p.Y66C exonic Tmem51 nonsynonymous SNV uc008vpr.1:c.A197G:p.Y66C exonic ENSMUSG00000040616 nonsynonymous SNV ENSMUST00000036572:c.A197G:p.Y66C 4qE1 NA NA chr4 141593464 ACGxACG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 205 2 0 54.840221 0.388889 0.02 1.517602 33 21 961 605 60 60 0 0 TT 34.528417 115 0 3009 0 KEEP - Tmem51 NO UVC_2 chr4 144893001 144893001 C T exonic Tnfrsf8 nonsynonymous SNV NM_009401:c.G131A:p.C44Y exonic Tnfrsf8 nonsynonymous SNV uc008vrv.1:c.G131A:p.C44Y exonic ENSMUSG00000028602 nonsynonymous SNV ENSMUST00000030339:c.G131A:p.C44Y 4qE1 NA NA chr4 144893001 CAGxAGT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322602 0.322807 0.999366 44 0 0 60.978436 1 0.02 -0.157864 0 18 0 524 0 60 0 0 CC 5.113899 17 0 484 0 KEEP - Tnfrsf8 YES UVC_2 chr4 153390090 153390090 A G exonic Lrrc47 nonsynonymous SNV NM_201226:c.A947G:p.N316S exonic Lrrc47 nonsynonymous SNV uc008way.1:c.A947G:p.N316S exonic ENSMUSG00000029028 nonsynonymous SNV ENSMUST00000030894:c.A947G:p.N316S 4qE2 NA NA chr4 153390090 AGAxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 93 1 0 43.813014 0.414634 0.02 -0.359275 24 17 684 478 60 60 0 0 AA 12.93206 43 0 1170 0 KEEP + Lrrc47 NO UVC_2 chr4 154041719 154041719 G T exonic Actrt2 nonsynonymous SNV NM_028513:c.C68A:p.A23E exonic Actrt2 nonsynonymous SNV uc008wca.2:c.C68A:p.A23E exonic ENSMUSG00000051276 nonsynonymous SNV ENSMUST00000060062:c.C68A:p.A23E 4qE2 NA NA chr4 154041719 CCTxCCT G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 70 0 0 9.26916 0.190476 0.02 -0.184188 17 4 510 118 60 60 0 0 GG 12.631304 42 0 1161 0 KEEP - Actrt2 NO UVC_2 chr4 155276437 155276437 C T exonic Acap3 unknown UNKNOWN exonic Acap3 nonsynonymous SNV uc008wfj.1:c.C1031T:p.S344L exonic ENSMUSG00000029033 nonsynonymous SNV ENSMUST00000079031:c.C1028T:p.S343L 4qE2 NA NA chr4 155276437 ACTxGGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865744 0.865745 0.999999 82 0 0 11.10471 0.128205 0.02 -0.341757 34 5 916 152 60 60 0 0 CC 10.513002 35 0 890 0 KEEP + Acap3 YES UVC_2 chr4 33082775 33082775 A G splicing Rragd(NM_027491:exon2:c.146-2A>G) NA NA splicing Rragd(uc008sfl.1:exon2:c.146-2A>G) NA NA splicing "ENSMUSG00000028278(ENSMUST00000098190:exon2:c.146-2A>G,ENSMUST00000029946:exon3:c.311-2A>G)" NA NA 4qA5 NA NA chr4 33082775 TGCxGTT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099086 0.099721 0.993634 23 0 0 11.670911 0.5 0.02 -0.087672 5 5 150 123 60 60 0 0 AA 3.609246 12 0 330 0 KEEP + Rragd NO UVC_2 chr4 34899201 34899201 G A UTR3 Mob3b NA NA downstream Mobkl2b NA NA UTR3 ENSMUSG00000073910 NA NA 4qA5 NA NA chr4 34899201 AAAxCTG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139181 0.139832 0.995343 31 0 0 26.557975 0.75 0.02 -0.105227 3 9 91 252 60 60 0 0 GG 4.210781 14 0 386 0 KEEP NA Mob3b YES UVC_2 chr4 40770701 40770701 G A exonic B4galt1 nonsynonymous SNV NM_022305:c.C422T:p.P141L exonic B4galt1 nonsynonymous SNV uc008shw.1:c.C422T:p.P141L exonic ENSMUSG00000028413 nonsynonymous SNV ENSMUST00000030121:c.C422T:p.P141L 4qA5 NA NA chr4 40770701 ATGxGGC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 0.999999 62 0 0 21.96363 0.347826 0.02 -0.201725 15 8 446 246 60 60 0 0 GG 10.825595 36 0 987 0 KEEP - B4galt1 YES UVC_2 chr4 41455593 41455593 T C exonic 1110017D15Rik nonsynonymous SNV NM_001048005:c.A350G:p.N117S exonic "1110017D15Rik,Smrp1" nonsynonymous SNV uc008six.1:c.A350G:p.N117S exonic ENSMUSG00000028441 nonsynonymous SNV ENSMUST00000030152:c.A350G:p.N117S 4qA5 NA NA chr4 41455593 TAGxTGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 171 1 0 45.291356 0.34 0.02 1.642947 33 17 970 511 60 60 0 0 TT 27.922013 93 0 2511 0 KEEP - 1110017D15Rik NO UVC_2 chr4 41740555 41740555 C G intergenic "Ccl27a(dist=19506),Gm3893(dist=22739)" NA NA intronic Ccl27a NA NA upstream ENSMUSG00000084194 NA NA 4qA5 "Score=0.98628;Name=No.85803,chr4:42564258" NA chr4 41740555 AGGxTCC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 115 4 11 21.230291 0.257143 0.02 -0.30689 26 9 764 256 40 32 0 0 CC 17.445161 58 0 1614 0 KEEP - Ccl27a NO UVC_2 chr4 46485137 46485137 A C UTR3 Anp32b NA NA UTR3 Anp32b NA NA UTR3 ENSMUSG00000028333 NA NA 4qB1 NA NA chr4 46485137 CCCxCCC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.352705 0.353947 0.99649 39 0 5 6.592742 0.176471 0.02 -0.166621 14 3 404 86 36 36 0 0 AA 5.095475 17 0 413 0 KEEP + Anp32b NO UVC_2 chr4 47053867 47053867 C T intronic Anks6 NA NA intronic Anks6 NA NA intronic ENSMUSG00000066191 NA NA 4qB1 NA NA chr4 47053867 CCCxGCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 99 0 0 106.760483 0.96875 0.02 -0.289384 1 31 23 939 60 60 0 0 CC 14.427457 48 0 1239 0 KEEP - Anks6 YES UVC_2 chr4 49667297 49667297 T G intronic Rnf20 NA NA intronic Rnf20 NA NA intronic ENSMUSG00000028309 NA NA 4qB1 NA NA chr4 49667297 AGGxCTG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 130 0 0 26.081759 0.174603 0.02 1.339633 52 11 1536 335 60 60 0 0 TT 14.733559 49 0 1325 0 KEEP + Rnf20 NO UVC_2 chr4 53799091 53799091 A G UTR3 Tal2 NA NA UTR3 Tal2 NA NA UTR3 ENSMUSG00000028417 NA NA 4qB2 NA NA chr4 53799091 GGTxTGA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999989 0.999989 1 394 2 0 50.701264 0.205607 0.02 2.649221 85 22 2344 638 60 60 0 0 AA 64.927036 216 0 5657 0 KEEP + Tal2 NO UVC_2 chr4 56811544 56811544 G C exonic Ikbkap nonsynonymous SNV NM_026079:c.C289G:p.L97V exonic Ikbkap nonsynonymous SNV uc012del.1:c.C289G:p.L97V exonic ENSMUSG00000028431 nonsynonymous SNV ENSMUST00000030140:c.C289G:p.L97V 4qB3 NA NA chr4 56811544 TGAxATT G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.963774 0.963774 1 154 2 0 50.338571 0.372549 0.02 1.543791 32 19 976 559 60 60 0 0 GG 21.96109 73 0 2102 0 KEEP - Ikbkap NO UVC_2 chr4 57722890 57722890 T G exonic Palm2 nonsynonymous SNV NM_172868:c.T962G:p.V321G exonic Palm2 nonsynonymous SNV uc008syh.1:c.T134G:p.V45G exonic ENSMUSG00000090053 nonsynonymous SNV ENSMUST00000102904:c.T962G:p.V321G 4qB3 NA NA chr4 57722890 CAGxGAC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 72 0 0 11.554659 0.142857 0.02 -0.31571 30 5 867 154 60 60 0 0 TT 8.411901 28 0 735 0 KEEP + Palm2 NO UVC_2 chr4 69918342 69918342 T C intronic Cdk5rap2 NA NA intronic Cdk5rap2 NA NA intronic ENSMUSG00000039298 NA NA 4qC2 NA NA chr4 69918342 GGGxTTT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 82 0 0 11.769518 0.185185 0.02 -0.23674 22 5 617 150 60 60 0 0 TT 10.824341 36 0 960 0 KEEP - Cdk5rap2 NO UVC_2 chr4 82618053 82618053 T G exonic Frem1 nonsynonymous SNV NM_177863:c.A3092C:p.K1031T exonic Frem1 nonsynonymous SNV uc008tkm.2:c.A3092C:p.K1031T exonic ENSMUSG00000059049 nonsynonymous SNV ENSMUST00000071708:c.A3092C:p.K1031T 4qC3 NA NA chr4 82618053 GACxTAT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260937 0.260965 0.999892 44 0 0 10.468597 0.3125 0.02 -0.14028 11 5 328 124 60 60 0 0 TT 6.908827 23 0 627 0 KEEP - Frem1 NO UVC_2 chr4 83087865 83087865 C T exonic Snapc3 synonymous SNV NM_029949:c.C795T:p.D265D exonic Snapc3 synonymous SNV uc012dgp.1:c.C333T:p.D111D exonic ENSMUSG00000028483 synonymous SNV ENSMUST00000030206:c.C795T:p.D265D 4qC3 NA NA chr4 83087865 AGAxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 79 0 0 71.17679 0.69697 0.02 -0.298216 10 23 307 690 60 60 0 0 CC 12.006345 43 1 1204 8 KEEP + Snapc3 YES UVC_2 chr4 98049875 98049875 C G exonic Tm2d1 nonsynonymous SNV NM_053157:c.G53C:p.G18A exonic Tm2d1 nonsynonymous SNV uc008tua.1:c.G53C:p.G18A exonic ENSMUSG00000028563 nonsynonymous SNV ENSMUST00000030292:c.G53C:p.G18A 4qC6 NA NA chr4 98049875 AGGxCCG C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.09971 0.099721 0.999892 38 0 0 10.398194 0.5 0.02 -0.087685 4 4 119 109 60 60 0 0 CC 6.911592 23 0 599 0 KEEP - Tm2d1 NO UVC_2 chr4 98121122 98121122 T C intronic Inadl NA NA intronic Inadl NA NA exonic ENSMUSG00000061859 synonymous SNV ENSMUST00000107030:c.T1761C:p.I587I 4qC6 NA NA chr4 98121122 CATxCGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 59 0 0 40.783309 0.538462 0.02 -0.228039 12 14 363 419 60 60 0 0 TT 8.661918 29 0 761 0 KEEP + Inadl NO UVC_2 chr5 102295254 102295254 A T exonic Wdfy3 synonymous SNV NM_172882:c.T7950A:p.S2650S exonic Wdfy3 synonymous SNV uc008yis.2:c.T7950A:p.S2650S exonic ENSMUSG00000043940 synonymous SNV ENSMUST00000174598:c.T8004A:p.S2668S 5qE4 NA NA chr5 102295254 CACxGAC A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322762 0.322807 0.999863 45 0 0 29.399495 0.555556 0.02 -0.157871 8 10 240 300 60 60 0 0 AA 6.015825 20 0 558 0 KEEP - Wdfy3 NO UVC_2 chr5 104244085 104244085 A C exonic Aff1 nonsynonymous SNV NM_001080798:c.A1150C:p.K384Q exonic Aff1 nonsynonymous SNV uc008yjt.1:c.A1126C:p.K376Q exonic ENSMUSG00000029313 nonsynonymous SNV ENSMUST00000031256:c.A1150C:p.K384Q 5qE5 NA NA chr5 104244085 ACAxAGG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 171 0 0 43.157947 0.269841 0.02 1.4386 46 17 1382 510 60 60 0 0 AA 24.663445 82 0 2267 0 KEEP + Aff1 NO UVC_2 chr5 104421830 104421830 C A intronic Hsd17b11 NA NA intronic Hsd17b11 NA NA intronic ENSMUSG00000029311 NA NA 5qE5 NA NA chr5 104421830 TGCxACT C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582848 0.58293 0.99986 50 0 0 55.513949 0.692308 0.02 -0.228045 8 18 243 539 60 60 0 0 CC 5.715143 19 0 532 0 KEEP - Hsd17b11 NO UVC_2 chr5 106037523 106037523 G A exonic Lrrc8c nonsynonymous SNV NM_133897:c.G2144A:p.C715Y exonic Lrrc8c nonsynonymous SNV uc008ylf.1:c.G2144A:p.C715Y exonic ENSMUSG00000054720 nonsynonymous SNV ENSMUST00000067924:c.G2144A:p.C715Y 5qE5 NA NA chr5 106037523 CTTxTAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 96 1 0 50.421682 0.413043 0.02 -0.403353 27 19 788 549 60 60 0 0 GG 13.233949 44 0 1229 0 KEEP + Lrrc8c YES UVC_2 chr5 107065877 107065877 A G exonic Zfp644 nonsynonymous SNV NM_026856:c.T1822C:p.Y608H exonic Zfp644 nonsynonymous SNV uc008ylp.1:c.T1432C:p.Y478H exonic ENSMUSG00000049606 nonsynonymous SNV ENSMUST00000045466:c.T1822C:p.Y608H 5qE5 NA NA chr5 107065877 AATxCTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 102 0 0 26.701315 0.211538 0.02 1.436314 41 11 1135 331 60 60 0 0 AA 12.328234 41 0 1081 0 KEEP - Zfp644 NO UVC_2 chr5 107066557 107066557 C T exonic Zfp644 nonsynonymous SNV NM_026856:c.G1142A:p.R381H exonic Zfp644 nonsynonymous SNV uc008ylp.1:c.G752A:p.R251H exonic ENSMUSG00000049606 nonsynonymous SNV ENSMUST00000045466:c.G1142A:p.R381H 5qE5 NA NA chr5 107066557 GTGxGAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.42342 0.423478 0.999863 43 0 0 15.307855 0.285714 0.02 -0.184136 15 6 409 179 60 60 0 0 CC 5.982666 20 0 477 0 KEEP - Zfp644 YES UVC_2 chr5 107067391 107067391 A G exonic Zfp644 nonsynonymous SNV NM_026856:c.T308C:p.V103A exonic Zfp644 nonsynonymous SNV uc008ylq.1:c.T308C:p.V103A exonic ENSMUSG00000049606 nonsynonymous SNV ENSMUST00000155495:c.T233C:p.V78A 5qE5 NA NA chr5 107067391 GGAxCAG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888779 0.888875 0.999892 65 0 0 31.362549 0.292683 0.02 -0.359576 29 12 839 364 60 60 0 0 AA 6.9176 23 0 632 0 KEEP - Zfp644 NO UVC_2 chr5 107325001 107325001 A C exonic Hfm1 nonsynonymous SNV NM_177873:c.T1787G:p.V596G exonic Hfm1 nonsynonymous SNV uc012eai.1:c.T1787G:p.V596G exonic ENSMUSG00000043410 nonsynonymous SNV ENSMUST00000117588:c.T1787G:p.V596G 5qE5 NA NA chr5 107325001 TCAxCCA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 118 0 0 21.369802 0.236842 0.02 -0.332752 29 9 825 261 60 60 0 0 AA 15.636808 52 0 1417 0 KEEP - Hfm1 NO UVC_2 chr5 107403953 107403953 T G intronic Cdc7 NA NA intronic Cdc7 NA NA exonic ENSMUSG00000029283 nonsynonymous SNV ENSMUST00000129938:c.T920G:p.F307C 5qE5 NA NA chr5 107403953 ACTxCAC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 142 0 0 32.905527 0.25 0.02 1.535042 39 13 1171 394 60 60 0 0 TT 19.549349 65 0 1805 0 KEEP + Cdc7 NO UVC_2 chr5 108332684 108332684 G A splicing Rpl5(NM_016980:exon5:c.325-1G>A) NA NA splicing Rpl5(uc008ynh.2:exon5:c.325-1G>A) NA NA splicing "ENSMUSG00000058558(ENSMUST00000082223:exon5:c.325-1G>A,ENSMUST00000153590:exon5:c.175-1G>A)" NA NA 5qF NA NA chr5 108332684 ATAxCTT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 228 0 3 27.958234 0.179104 0.02 1.305005 55 12 1569 359 60 60 0 0 GG 36.665641 122 0 3394 0 KEEP + Rpl5 YES UVC_2 chr5 108999157 108999157 A G splicing "Gak(NM_001282051:exon28:c.3333+2T>C,NM_001282052:exon27:c.3180+2T>C,NM_153569:exon28:c.3816+2T>C)" NA NA exonic;splicing "Gak;Gak(uc008yog.1:exon9:c.1224+2T>C,uc008yoh.1:exon28:c.3816+2T>C,uc008yoi.1:exon28:c.3333+2T>C,uc008yoj.1:exon27:c.3180+2T>C)" nonsynonymous SNV uc008yok.1:c.T3182C:p.V1061A splicing "ENSMUSG00000062234(ENSMUST00000156110:exon11:c.1723+2T>C,ENSMUST00000112579:exon27:c.3669+2T>C,ENSMUST00000135225:exon27:c.3673+2T>C,ENSMUST00000046603:exon28:c.3816+2T>C)" NA NA 5qF NA NA chr5 108999157 CCTxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 106 2 0 9.976633 0.106383 0.02 -0.41191 42 5 1169 145 60 60 0 0 AA 12.327405 41 0 1078 0 KEEP - Gak NO UVC_2 chr5 109226928 109226928 G A exonic Vmn2r8 nonsynonymous SNV NM_001104620:c.C1831T:p.P611S exonic Vmn2r8 nonsynonymous SNV uc009vdf.1:c.C1831T:p.P611S exonic ENSMUSG00000090961 nonsynonymous SNV ENSMUST00000172140:c.C1831T:p.P611S 5qF "Score=0.923619;Name=No.90941,chr5:109264334" NA chr5 109226928 TGGxAGT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 548 2 122 181.072776 0.360215 0.02 4.14406 119 67 3615 2019 60 60 0 0 GG 85.727761 285 0 8083 0 KEEP - Vmn2r8 YES UVC_2 chr5 109882379 109882379 G A exonic Vmn2r17 synonymous SNV NM_001104628:c.G2523A:p.E841E exonic Vmn2r17 synonymous SNV uc009vdo.1:c.G2523A:p.E841E exonic ENSMUSG00000091879 synonymous SNV ENSMUST00000171841:c.G2523A:p.E841E 5qF "Score=0.933443;Name=No.2651,chr1:197112556" NA chr5 109882379 GGAxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760887 0.760887 1 88 0 0 46.004206 0.484848 0.02 -0.28945 17 16 522 483 60 60 0 0 GG 14.828542 52 1 1480 7 KEEP + Vmn2r17 YES UVC_2 chr5 111017368 111017368 A C exonic Galnt9 nonsynonymous SNV NM_198306:c.A530C:p.N177T exonic Galnt9 nonsynonymous SNV uc008yqz.2:c.A530C:p.N177T exonic ENSMUSG00000033316 nonsynonymous SNV ENSMUST00000040001:c.A530C:p.N177T 5qF NA NA chr5 111017368 TCAxCCA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 125 0 0 28.392348 0.214286 0.02 1.401027 44 12 1306 353 60 60 0 0 AA 16.24025 54 0 1475 0 KEEP + Galnt9 NO UVC_2 chr5 111102548 111102548 A G exonic Ep400 nonsynonymous SNV NM_173066:c.T7649C:p.V2550A exonic Ep400 nonsynonymous SNV uc008yrf.1:c.T3554C:p.V1185A exonic ENSMUSG00000029505 nonsynonymous SNV ENSMUST00000112436:c.T7649C:p.V2550A 5qF NA NA chr5 111102548 GATxCCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 114 0 0 34.261294 0.259259 0.02 1.418623 40 14 1160 410 60 60 0 0 AA 14.730291 49 0 1296 0 KEEP - Ep400 NO UVC_2 chr5 113190403 113190403 G A exonic Myo18b stopgain SNV NM_028901:c.C5893T:p.Q1965X exonic Myo18b stopgain SNV uc008ytr.2:c.C5893T:p.Q1965X exonic ENSMUSG00000072720 stopgain SNV ENSMUST00000086617:c.C5893T:p.Q1965X 5qF NA NA chr5 113190403 CCTxAAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 112 0 0 57.504308 0.512821 0.02 -0.342065 19 20 577 597 60 70 0 0 GG 18.937704 63 0 1779 0 KEEP - Myo18b YES UVC_2 chr5 114495627 114495627 C T exonic Svop nonsynonymous SNV NM_026805:c.G592A:p.A198T exonic Svop nonsynonymous SNV uc008yzb.1:c.G592A:p.A198T exonic ENSMUSG00000042078 nonsynonymous SNV ENSMUST00000058472:c.G592A:p.A198T 5qF NA NA chr5 114495627 CGGxGTA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 133 1 0 56.624337 0.47619 0.02 -0.368212 22 20 572 597 60 60 0 0 CC 21.03352 70 0 1754 0 KEEP - Svop YES UVC_2 chr5 114803822 114803822 T A intronic Myo1h NA NA intronic Myo1h NA NA intronic ENSMUSG00000066952 NA NA 5qF NA NA chr5 114803822 TTCxTTT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888873 0.888875 0.999998 81 0 0 7.813373 0.102564 0.02 -0.359576 35 4 1050 115 60 60 0 0 TT 7.050501 33 1 918 27 KEEP + Myo1h NO UVC_2 chr5 115124017 115124017 G A intronic Gltp NA NA intronic Gltp NA NA intronic ENSMUSG00000011884 NA NA 5qF NA NA chr5 115124017 CCCxGGG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 166 0 0 66.834436 0.378788 0.02 1.3054 41 25 1018 739 60 60 0 0 GG 24.236971 81 0 1864 0 KEEP - Gltp YES UVC_2 chr5 115124018 115124018 G A intronic Gltp NA NA intronic Gltp NA NA intronic ENSMUSG00000011884 NA NA 5qF NA NA chr5 115124018 CCGxGGT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 166 0 0 68.313585 0.378788 0.02 1.403591 41 25 1209 754 60 60 0 0 GG 24.298058 81 0 2215 0 KEEP - Gltp YES UVC_2 chr5 115203349 115203349 G A intronic Git2 NA NA intronic Git2 NA NA intronic ENSMUSG00000041890 NA NA 5qF NA NA chr5 115203349 CCAxATA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73967 0.739671 0.999998 72 0 0 39.153773 0.4375 0.02 -0.280678 18 14 554 420 60 60 0 0 GG 9.927591 33 0 949 0 KEEP - Git2 YES UVC_2 chr5 119043315 119043315 T C intronic Med13l NA NA intronic Med13l NA NA intronic ENSMUSG00000018076 NA NA 5qF NA NA chr5 119043315 AACxATT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612321 0.612407 0.999859 49 0 0 30.221734 0.407407 0.02 -0.236818 16 11 485 329 60 60 0 0 TT 5.414541 18 0 508 0 KEEP + Med13l NO UVC_2 chr5 120578294 120578294 T G exonic Rbm19 nonsynonymous SNV NM_028762:c.T1372G:p.Y458D exonic Rbm19 nonsynonymous SNV uc008zha.1:c.T1372G:p.Y458D exonic ENSMUSG00000029594 nonsynonymous SNV ENSMUST00000031590:c.T1372G:p.Y458D 5qF NA NA chr5 120578294 GCCxATG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 162 0 0 12.027223 0.081081 0.02 1.243202 68 6 2002 182 60 60 0 0 TT 19.846556 66 0 1771 0 KEEP - Rbm19 NO UVC_2 chr5 120935863 120935863 A T intronic Plbd2 NA NA intronic Plbd2 NA NA intronic ENSMUSG00000029598 NA NA 5qF NA NA chr5 120935863 GAGxGCA A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.779366 0.78106 0.997832 57 0 0 45.522643 0.470588 0.02 -0.298209 18 16 547 481 60 60 0 0 AA 4.812645 16 0 446 0 KEEP - Plbd2 NO UVC_2 chr5 121365894 121365894 A T exonic Oas1d nonsynonymous SNV NM_133893:c.A407T:p.K136M exonic Oas1d nonsynonymous SNV uc008zik.2:c.A407T:p.K136M exonic ENSMUSG00000032623 nonsynonymous SNV ENSMUST00000044224:c.A407T:p.K136M 5qF "Score=0.899322;Name=No.90992,chr5:121235715" NA chr5 121365894 TCAxGCT A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 120 0 0 96.664337 0.566667 0.02 1.366142 26 34 785 983 60 60 0 0 AA 14.730431 49 0 1354 0 KEEP + Oas1d NO UVC_2 chr5 122910014 122910014 G A exonic Atp2a2 synonymous SNV NM_001110140:c.C2289T:p.L763L exonic Atp2a2 synonymous SNV uc008zli.2:c.C2289T:p.L763L exonic ENSMUSG00000029467 synonymous SNV ENSMUST00000031423:c.C2298T:p.L766L 5qF NA NA chr5 122910014 GATxAGG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 107 2 0 59.830324 0.567568 0.02 -0.324392 16 21 472 608 60 60 0 0 GG 16.243938 54 0 1542 0 KEEP - Atp2a2 YES UVC_2 chr5 123565129 123565129 T C exonic Tmem120b nonsynonymous SNV NM_001039723:c.T700C:p.Y234H exonic Tmem120b nonsynonymous SNV uc012edc.1:c.T583C:p.Y195H exonic ENSMUSG00000054434 nonsynonymous SNV ENSMUST00000160344:c.T337C:p.Y113H 5qF NA NA chr5 123565129 CAGxACT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693573 0.693668 0.999863 56 0 0 11.617964 0.166667 0.02 -0.263075 25 5 711 151 60 60 0 0 TT 6.013885 20 0 529 0 KEEP + Tmem120b NO UVC_2 chr5 124217758 124217758 A G intronic Kntc1 NA NA intronic Kntc1 NA NA intronic ENSMUSG00000029414 NA NA 5qF NA NA chr5 124217758 ATCxTGT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 76 0 0 9.080058 0.230769 0.02 -0.22662 20 6 593 123 60 60 0 0 AA 11.729586 39 0 1065 0 KEEP + Kntc1 NO UVC_2 chr5 124736351 124736351 G A intronic Mphosph9 NA NA intronic Mphosph9 NA NA intronic ENSMUSG00000038126 NA NA 5qF NA NA chr5 124736351 TATxGAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 106 0 0 53.574618 0.642857 0.02 -0.26219 10 18 283 529 60 60 0 0 GG 17.748914 59 0 1694 0 KEEP - Mphosph9 YES UVC_2 chr5 125983534 125983534 T C intronic Aacs NA NA intronic Aacs NA NA intronic ENSMUSG00000029482 NA NA 5qG1.1 NA NA chr5 125983534 CTGxCCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865743 0.865745 0.999998 78 0 0 8.511253 0.102564 0.02 -0.342051 35 4 1029 122 60 60 0 0 TT 9.924094 33 0 892 0 KEEP + Aacs NO UVC_2 chr5 131950995 131950995 G A exonic Auts2 unknown UNKNOWN exonic Auts2 synonymous SNV uc008zuv.1:c.C1260T:p.I420I exonic ENSMUSG00000029673 synonymous SNV ENSMUST00000061007:c.C1260T:p.I420I 5qG2 NA NA chr5 131950995 GGAxATG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717266 0.717315 0.999931 62 0 0 69.055913 0.766667 0.02 -0.27155 7 23 199 652 60 60 0 0 GG 7.51878 25 0 690 0 KEEP - Auts2 YES UVC_2 chr5 134878008 134878008 C T exonic Gtf2ird1 nonsynonymous SNV NM_001081462:c.G1063A:p.V355M exonic Gtf2ird1 nonsynonymous SNV uc008zvt.1:c.G1063A:p.V355M exonic ENSMUSG00000023079 nonsynonymous SNV ENSMUST00000073161:c.G1063A:p.V355M 5qG2 NA NA chr5 134878008 GCAxGCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 180 2 0 30.479718 0.208955 0.02 1.305084 53 14 1349 387 60 60 0 0 CC 27.640035 92 0 2271 0 KEEP - Gtf2ird1 YES UVC_2 chr5 134978546 134978546 T C exonic Clip2 synonymous SNV NM_001039162:c.A2169G:p.S723S exonic Clip2 synonymous SNV uc008zwj.1:c.A2169G:p.S723S exonic ENSMUSG00000063146 synonymous SNV ENSMUST00000036999:c.A2169G:p.S723S 5qG2 NA NA chr5 134978546 CAGxGAG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 99 0 0 16.826561 0.205128 0.02 -0.341989 31 8 907 216 60 60 0 0 TT 15.036485 50 0 1347 0 KEEP - Clip2 NO UVC_2 chr5 135133113 135133113 G A exonic Limk1 nonsynonymous SNV NM_010717:c.C1924T:p.H642Y exonic Limk1 nonsynonymous SNV uc008zws.1:c.C1828T:p.H610Y exonic ENSMUSG00000029674 nonsynonymous SNV ENSMUST00000111233:c.C1900T:p.H634Y 5qG2 NA NA chr5 135133113 GGTxGGC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 141 0 0 77.414436 0.453125 0.02 1.430566 35 29 957 827 60 60 0 0 GG 16.791636 56 0 1522 0 KEEP - Limk1 YES UVC_2 chr5 135152454 135152454 T G intronic Limk1 NA NA intronic Limk1 NA NA exonic ENSMUSG00000072573 synonymous SNV ENSMUST00000100641:c.T21G:p.P7P 5qG2 NA NA chr5 135152454 GCCxCTG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 145 0 0 8.453662 0.070423 0.02 1.171123 66 5 1971 139 60 60 0 0 TT 16.232353 54 0 1484 0 KEEP - Limk1 NO UVC_2 chr5 135702446 135702446 T C exonic Baz1b nonsynonymous SNV NM_011714:c.T2936C:p.V979A exonic Baz1b nonsynonymous SNV uc008zxz.2:c.T2936C:p.V979A exonic ENSMUSG00000002748 nonsynonymous SNV ENSMUST00000002825:c.T2936C:p.V979A 5qG2 NA NA chr5 135702446 CTGxGGA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 50 0 0 45.43158 0.64 0.02 -0.219231 9 16 267 449 60 60 0 0 TT 5.412796 18 0 484 0 KEEP + Baz1b NO UVC_2 chr5 135860038 135860038 T C splicing Pom121(NM_148932:exon8:c.1290-2A>G) NA NA splicing Pom121(uc008zyi.1:exon8:c.1290-2A>G) NA NA splicing "ENSMUSG00000053293(ENSMUST00000065638:exon8:c.1290-2A>G,ENSMUST00000111171:exon8:c.1290-2A>G)" NA NA 5qG2 NA NA chr5 135860038 CTCxGTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999973 0.999973 1 193 0 0 83.106467 0.366337 0.02 2.997873 64 37 1932 943 60 60 0 0 TT 21.65515 72 0 1980 0 KEEP - Pom121 NO UVC_2 chr5 137972810 137972810 A G intronic Gnb2 NA NA intronic Gnb2 NA NA UTR5 ENSMUSG00000029713 NA NA 5qG2 NA NA chr5 137972810 AGCxCTA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 98 1 0 18.451358 0.230769 0.02 -0.341718 30 9 862 233 60 60 0 0 AA 11.707825 39 0 1029 0 KEEP - Gnb2 NO UVC_2 chr5 142929967 142929967 A T exonic Foxk1 synonymous SNV NM_199068:c.A1623T:p.T541T exonic Foxk1 synonymous SNV uc009aio.1:c.A1623T:p.T541T exonic ENSMUSG00000056493 synonymous SNV ENSMUST00000072837:c.A1623T:p.T541T 5qG2 NA NA chr5 142929967 CACxGCC A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 99 0 0 37.658928 0.319149 0.02 -0.411809 32 15 967 433 60 60 0 0 AA 12.632063 42 0 1157 0 KEEP + Foxk1 NO UVC_2 chr5 144686791 144686791 G C exonic Pms2 nonsynonymous SNV NM_008886:c.G1846C:p.E616Q exonic Pms2 nonsynonymous SNV uc009akz.1:c.G1846C:p.E616Q exonic ENSMUSG00000079109 nonsynonymous SNV ENSMUST00000148011:c.G1846C:p.E616Q 5qG2 NA NA chr5 144686791 CTCxAGT G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 98 0 0 88.583128 0.717949 0.02 -0.342028 11 28 312 853 60 60 0 0 GG 14.730547 49 0 1308 0 KEEP + Pms2 NO UVC_2 chr5 151342802 151342802 C T exonic Brca2 nonsynonymous SNV NM_001081001:c.C3455T:p.S1152F exonic Brca2 nonsynonymous SNV uc009aty.1:c.C3455T:p.S1152F exonic ENSMUSG00000041147 nonsynonymous SNV ENSMUST00000044620:c.C3455T:p.S1152F 5qG3 NA NA chr5 151342802 CCTxTGT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818463 0.818465 0.999998 77 1 0 54.645744 0.527778 0.02 -0.315729 17 19 521 564 60 60 0 0 CC 9.927557 33 0 949 0 KEEP + Brca2 YES UVC_2 chr5 20402509 20402509 A G exonic Rsbn1l nonsynonymous SNV NM_001080977:c.T1850C:p.V617A exonic Rsbn1l nonsynonymous SNV uc008wod.1:c.T1850C:p.V617A exonic ENSMUSG00000039968 nonsynonymous SNV ENSMUST00000036489:c.T1850C:p.V617A 5qA3 NA NA chr5 20402509 TCAxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 91 0 0 36.636376 0.4 0.02 -0.306738 21 14 615 402 60 60 0 0 AA 13.83338 46 0 1245 0 KEEP - Rsbn1l NO UVC_2 chr5 27980246 27980246 G A exonic Dpp6 nonsynonymous SNV NM_001136060:c.G1081A:p.E361K exonic Dpp6 nonsynonymous SNV uc008wtq.1:c.G292A:p.E98K exonic ENSMUSG00000061576 nonsynonymous SNV ENSMUST00000071500:c.G1084A:p.E362K 5qB1 NA NA chr5 27980246 CATxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.941741 0.941741 1 161 0 0 44.552117 0.361702 0.02 -0.412234 30 17 923 498 60 60 0 0 GG 24.969724 83 0 2397 0 KEEP + Dpp6 YES UVC_2 chr5 28533796 28533796 C G exonic Cnpy1 nonsynonymous SNV NM_175651:c.G278C:p.S93T exonic Cnpy1 nonsynonymous SNV uc008wtx.1:c.G278C:p.S93T exonic ENSMUSG00000044681 nonsynonymous SNV ENSMUST00000117098:c.G278C:p.S93T 5qB1 NA NA chr5 28533796 AGGxTGG C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.49048 0.490544 0.999869 47 0 0 21.36315 0.347826 0.02 -0.201731 15 8 450 240 60 60 0 0 CC 6.016372 20 0 569 0 KEEP - Cnpy1 NO UVC_2 chr5 30678638 30678638 G A intronic Otof NA NA intronic Otof NA NA intronic ENSMUSG00000062372 NA NA 5qB1 NA NA chr5 30678638 AGGxAGC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 84 0 0 54.443714 0.475 0.02 -0.350834 21 19 628 574 60 60 0 0 GG 11.423535 38 0 1037 0 KEEP - Otof YES UVC_2 chr5 30678972 30678972 T C intronic Otof NA NA intronic Otof NA NA intronic ENSMUSG00000062372 NA NA 5qB1 NA NA chr5 30678972 GGGxCAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.9982 0.9982 1 163 0 0 29.60909 0.216667 0.02 1.244512 47 13 1353 370 70 60 0 0 TT 25.22718 84 0 2190 0 KEEP - Otof NO UVC_2 chr5 33172935 33172935 C G exonic Prr14l nonsynonymous SNV NM_194340:c.G1864C:p.A622P exonic C330019G07Rik nonsynonymous SNV uc008wzy.2:c.G1864C:p.A622P exonic ENSMUSG00000054280 nonsynonymous SNV ENSMUST00000120129:c.G1864C:p.A622P 5qB1 "Score=0.952801;Name=No.92092,chr8_random:321865" NA chr5 33172935 CAGxTGC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 103 0 0 17.97405 0.16 0.02 -0.43854 42 8 1262 237 60 60 0 0 CC 13.222497 44 0 1213 0 KEEP - Prr14l NO UVC_2 chr5 33178263 33178263 A G splicing Prr14l(NM_194340:exon5:c.544+2T>C) NA NA splicing C330019G07Rik(uc008wzy.2:exon5:c.544+2T>C) NA NA splicing ENSMUSG00000054280(ENSMUST00000120129:exon5:c.544+2T>C) NA NA 5qB1 NA NA chr5 33178263 CATxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.162466 0.162467 0.999997 48 2 0 10.924163 0.307692 0.02 -0.114013 9 4 256 125 60 60 0 0 AA 8.720879 29 0 775 0 KEEP - Prr14l NO UVC_2 chr5 33593684 33593684 A C exonic Ctbp1 synonymous SNV NM_001198859:c.T585G:p.A195A exonic Ctbp1 synonymous SNV uc008xal.2:c.T363G:p.A121A exonic ENSMUSG00000037373 synonymous SNV ENSMUST00000079746:c.T585G:p.A195A 5qB1 NA NA chr5 33593684 AAAxGCC A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322784 0.322807 0.999931 56 0 0 13.285172 0.333333 0.02 -0.157836 12 6 362 154 60 60 0 0 AA 7.512122 25 0 678 0 KEEP - Ctbp1 NO UVC_2 chr5 36326988 36326988 T C intronic Afap1 NA NA intronic Afap1 NA NA intronic ENSMUSG00000029094 NA NA 5qB3 NA NA chr5 36326988 TTTxGGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 114 0 0 9.158789 0.142857 0.02 -0.306936 30 5 890 130 60 60 0 0 TT 18.347358 61 0 1685 0 KEEP + Afap1 NO UVC_2 chr5 40005872 40005872 G A exonic Hs3st1 synonymous SNV NM_010474:c.C666T:p.D222D exonic Hs3st1 synonymous SNV uc008xgy.2:c.C666T:p.D222D exonic ENSMUSG00000051022 synonymous SNV ENSMUST00000053116:c.C666T:p.D222D 5qB3 NA NA chr5 40005872 GCGxTCG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 147 0 0 47.266986 0.345455 0.02 1.508792 36 19 1054 536 60 60 0 0 GG 22.812678 76 0 2031 0 KEEP - Hs3st1 YES UVC_2 chr5 50351559 50351559 G A exonic Gpr125 synonymous SNV NM_133911:c.C3885T:p.V1295V exonic Gpr125 synonymous SNV uc008xjz.2:c.C3885T:p.V1295V exonic ENSMUSG00000029090 synonymous SNV ENSMUST00000030971:c.C3885T:p.V1295V 5qB3 NA NA chr5 50351559 AGTxACG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 198 0 0 74.611916 0.349398 0.02 1.1643 54 29 1632 841 60 60 0 0 GG 27.312398 91 0 2574 0 KEEP - Gpr125 YES UVC_2 chr5 5249156 5249156 G A exonic Cdk14 nonsynonymous SNV NM_011074:c.C196T:p.P66S exonic Cdk14 nonsynonymous SNV uc008wih.2:c.C58T:p.P20S exonic ENSMUSG00000028926 nonsynonymous SNV ENSMUST00000115450:c.C58T:p.P20S 5qA1 NA NA chr5 5249156 CAGxAAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 99 1 0 74.812789 0.595238 0.02 -0.37714 17 25 517 752 60 60 0 0 GG 12.634376 42 0 1194 0 KEEP - Cdk14 YES UVC_2 chr5 63006276 63006276 A G exonic Arap2 nonsynonymous SNV NM_178407:c.T4457C:p.L1486P exonic Arap2 nonsynonymous SNV uc008xma.2:c.T4457C:p.L1486P exonic ENSMUSG00000037999 nonsynonymous SNV ENSMUST00000076623:c.T4457C:p.L1486P 5qC3.1 NA NA chr5 63006276 CCAxGAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.899314 0.899314 1 135 0 0 50.329754 0.428571 0.02 -0.368386 24 18 733 542 60 60 0 0 AA 18.947735 63 0 1749 0 KEEP - Arap2 NO UVC_2 chr5 63030284 63030284 G A intronic Arap2 NA NA intronic Arap2 NA NA intronic ENSMUSG00000037999 NA NA 5qC3.1 NA NA chr5 63030284 GAGxACA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 68 0 0 27.990938 0.416667 0.02 -0.210513 14 10 433 303 60 60 0 0 GG 11.129733 37 0 1052 0 KEEP - Arap2 YES UVC_2 chr5 72660646 72660646 A G exonic Atp10d unknown UNKNOWN exonic Atp10d nonsynonymous SNV uc008xrh.2:c.A2954G:p.K985R ncRNA_exonic ENSMUSG00000046808 NA NA 5qC3.2 NA NA chr5 72660646 GCAxACT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 47 2 0 48.946464 0.64 0.02 -0.219156 9 16 237 484 60 60 0 0 AA 5.413568 18 0 494 0 KEEP + Atp10d NO UVC_2 chr5 74608274 74608274 A G splicing Scfd2(NM_001114660:exon9:c.1962+2T>C) NA NA splicing Scfd2(uc008xtk.2:exon9:c.1962+2T>C) NA NA splicing "ENSMUSG00000062110(ENSMUST00000072857:exon9:c.1962+2T>C,ENSMUST00000121330:exon8:c.1827+2T>C)" NA NA 5qC3.3 NA NA chr5 74608274 AGTxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 170 0 0 15.225941 0.122807 0.02 1.392472 50 7 1409 211 60 60 0 0 AA 26.098424 87 0 2273 0 KEEP - Scfd2 NO UVC_2 chr5 87092532 87092532 G A exonic Tmprss11bnl synonymous SNV NM_177024:c.C567T:p.S189S exonic Tmprss11bnl synonymous SNV uc008xxu.1:c.C567T:p.S189S exonic ENSMUSG00000035861 synonymous SNV ENSMUST00000038448:c.C567T:p.S189S 5qE1 NA NA chr5 87092532 AGTxGAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.979526 0.979526 1 178 1 0 97.568579 0.589286 0.02 1.499994 23 33 678 983 60 60 0 0 GG 29.757861 99 0 2784 0 KEEP - Tmprss11bnl YES UVC_2 chr5 87903919 87903919 A T exonic Ugt2a2 nonsynonymous SNV NM_001024148:c.T214A:p.F72I exonic Ugt2a2 nonsynonymous SNV uc008xyj.2:c.T214A:p.F72I exonic ENSMUSG00000029268 nonsynonymous SNV ENSMUST00000079811:c.T214A:p.F72I 5qE1 NA NA chr5 87903919 CAAxATT A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.948399 0.948402 0.999997 86 0 0 7.436046 0.083333 0.02 -0.420995 44 4 1315 115 60 60 0 0 AA 9.324216 31 0 860 0 KEEP - Ugt2a2 NO UVC_2 chr5 87946388 87946388 G A exonic Sult1b1 synonymous SNV NM_019878:c.C711T:p.P237P exonic Sult1b1 synonymous SNV uc008xym.1:c.C711T:p.P237P exonic ENSMUSG00000029269 synonymous SNV ENSMUST00000120150:c.C711T:p.P237P 5qE1 NA NA chr5 87946388 CAGxGGG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760886 0.760887 0.999999 82 2 0 29.225994 0.333333 0.02 -0.289441 22 11 661 331 60 60 0 0 GG 10.828561 36 0 1006 0 KEEP - Sult1b1 YES UVC_2 chr5 87946389 87946389 G A exonic Sult1b1 nonsynonymous SNV NM_019878:c.C710T:p.P237L exonic Sult1b1 nonsynonymous SNV uc008xym.1:c.C710T:p.P237L exonic ENSMUSG00000029269 nonsynonymous SNV ENSMUST00000120150:c.C710T:p.P237L 5qE1 NA NA chr5 87946389 AGGxGGT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.781059 0.78106 0.999999 84 2 0 29.453222 0.323529 0.02 -0.298221 23 11 700 335 60 60 0 0 GG 10.828494 36 0 1004 0 KEEP - Sult1b1 YES UVC_2 chr5 90112188 90112188 A G exonic Adamts3 nonsynonymous SNV NM_001081401:c.T3028C:p.C1010R exonic Adamts3 nonsynonymous SNV uc008yaq.2:c.T3028C:p.C1010R exonic ENSMUSG00000043635 nonsynonymous SNV ENSMUST00000061427:c.T3028C:p.C1010R 5qE1 NA NA chr5 90112188 GGCxGGG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 80 0 0 49.986398 0.633333 0.02 -0.263012 11 19 326 495 60 60 0 0 AA 12.631417 42 0 1143 0 KEEP - Adamts3 NO UVC_2 chr5 92484028 92484028 T C exonic G3bp2 nonsynonymous SNV NM_001080795:c.A1129G:p.R377G exonic G3bp2 nonsynonymous SNV uc008yci.1:c.A1129G:p.R377G exonic ENSMUSG00000029405 nonsynonymous SNV ENSMUST00000113127:c.A1129G:p.R377G 5qE2 NA NA chr5 92484028 CTCxTGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918107 0.918171 0.999931 78 0 0 46.67746 0.395349 0.02 -0.385926 26 17 788 511 60 60 0 0 TT 7.519402 25 0 694 0 KEEP - G3bp2 NO UVC_2 chr5 92640141 92640141 C A ncRNA_exonic U90926 NA NA ncRNA_exonic U90926 NA NA exonic ENSMUSG00000029409 stopgain SNV ENSMUST00000031356:c.G127T:p.E43X 5qE2 NA NA chr5 92640141 ATTxACA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490544 0.490544 1 71 0 0 6.767704 0.130435 0.02 -0.201418 20 3 597 92 60 60 0 0 CC 11.731467 39 0 1108 0 KEEP - U90926 NO UVC_2 chr6 100598326 100598326 G A intronic Shq1 NA NA intronic Shq1 NA NA intronic ENSMUSG00000035378 NA NA 6qD3 NA NA chr6 100598326 ATTxGCT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818462 0.818465 0.999997 77 0 0 19.836987 0.222222 0.02 -0.315752 28 8 836 243 60 60 0 0 GG 8.700589 29 0 787 0 KEEP - Shq1 YES UVC_2 chr6 101490569 101490569 T G intergenic "Pdzrn3(dist=162678),Gm9871(dist=233674)" NA NA intergenic "Pdzrn3(dist=162678),Gm9871(dist=233674)" NA NA exonic ENSMUSG00000056743 nonsynonymous SNV ENSMUST00000071059:c.T274G:p.F92V 6qD3 NA NA chr6 101490569 TTAxTTC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.693668 0.693668 1 87 1 0 22.935944 0.3 0.02 -0.263108 21 9 612 266 60 60 0 0 TT 12.930362 43 0 1173 0 KEEP NA Pdzrn3 NO UVC_2 chr6 106740858 106740858 A G exonic Crbn nonsynonymous SNV NM_021449:c.T661C:p.Y221H exonic Crbn nonsynonymous SNV uc009dda.1:c.T661C:p.Y221H exonic ENSMUSG00000005362 nonsynonymous SNV ENSMUST00000013882:c.T661C:p.Y221H 6qE1 NA NA chr6 106740858 AATxCTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 68 0 0 22.25449 0.363636 0.02 -0.192953 14 8 407 247 60 60 0 0 AA 12.028263 40 0 1069 0 KEEP - Crbn NO UVC_2 chr6 115972128 115972128 G C exonic Tmcc1 nonsynonymous SNV NM_177412:c.C1927G:p.R643G exonic Tmcc1 nonsynonymous SNV uc009djo.2:c.C967G:p.R323G exonic ENSMUSG00000030126 nonsynonymous SNV ENSMUST00000172510:c.C580G:p.R194G 6qE3 NA NA chr6 115972128 GCCxGTC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998093 0.9982 0.999892 102 7 0 7.562453 0.088889 0.02 1.245161 41 4 1036 115 60 60 0 0 GG 6.911889 23 0 585 0 KEEP - Tmcc1 NO UVC_2 chr6 115974931 115974931 C A exonic Tmcc1 synonymous SNV NM_177412:c.G1524T:p.L508L exonic Tmcc1 synonymous SNV uc009djo.2:c.G564T:p.L188L exonic ENSMUSG00000030126 synonymous SNV ENSMUST00000172510:c.G177T:p.L59L 6qE3 NA NA chr6 115974931 ATTxAGC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 105 26 0 107.193684 0.544118 0.02 1.234424 31 37 928 1099 60 37 0 0 CC 11.726571 39 0 1104 0 KEEP - Tmcc1 NO UVC_2 chr6 115992933 115992933 C G exonic Tmcc1 nonsynonymous SNV NM_177412:c.G1455C:p.R485S exonic Tmcc1 nonsynonymous SNV uc009djo.2:c.G495C:p.R165S exonic ENSMUSG00000030126 nonsynonymous SNV ENSMUST00000172510:c.G108C:p.R36S 6qE3 NA NA chr6 115992933 GTCxCTC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 103 12 0 33.591863 0.264151 0.02 1.330879 39 14 1169 402 60 37 0 0 CC 12.629469 42 0 1148 0 KEEP - Tmcc1 NO UVC_2 chr6 118362125 118362125 A G intronic Bms1 NA NA intronic Bms1 NA NA intronic ENSMUSG00000030138 NA NA 6qF1 NA NA chr6 118362125 AGGxAAG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668521 0.668523 0.999997 62 0 0 33.083644 0.413793 0.02 -0.254293 17 12 504 359 60 60 0 0 AA 8.421733 28 0 774 0 KEEP - Bms1 NO UVC_2 chr6 123335278 123335278 A C downstream Vmn2r20 NA NA downstream Vmn2r20 NA NA downstream ENSMUSG00000090280 NA NA 6qF2 NA NA chr6 123335278 GGAxGTT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 175 0 1 66.275589 0.355263 0.02 1.127569 49 27 1459 749 57 57 0 0 AA 22.256062 74 0 2050 0 KEEP NA Vmn2r20 NO UVC_2 chr6 125057614 125057614 T C exonic Chd4 synonymous SNV NM_145979:c.T2229C:p.A743A exonic Chd4 synonymous SNV uc009dtm.1:c.T2250C:p.A750A exonic ENSMUSG00000063870 synonymous SNV ENSMUST00000056889:c.T2229C:p.A743A 6qF2 NA NA chr6 125057614 GGCxGAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.52216 0.522161 0.999997 62 2 0 10.055024 0.208333 0.02 -0.210414 19 5 561 130 60 60 0 0 TT 9.323759 31 0 854 0 KEEP + Chd4 NO UVC_2 chr6 125607224 125607224 G A exonic Vwf nonsynonymous SNV NM_011708:c.G6463A:p.A2155T exonic Vwf nonsynonymous SNV uc009duu.1:c.G1063A:p.A355T exonic ENSMUSG00000001930 nonsynonymous SNV ENSMUST00000001995:c.G6463A:p.A2155T 6qF3 NA NA chr6 125607224 ATCxCTC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 288 0 0 72.166587 0.244094 0.02 2.573405 96 31 2443 880 60 60 0 0 GG 36.62003 122 0 2993 0 KEEP + Vwf YES UVC_2 chr6 127039240 127039240 T C exonic 9630033F20Rik nonsynonymous SNV NM_177003:c.A352G:p.T118A exonic 9630033F20Rik nonsynonymous SNV uc009dvq.2:c.A352G:p.T118A exonic ENSMUSG00000038028 nonsynonymous SNV ENSMUST00000039913:c.A352G:p.T118A 6qF3 NA NA chr6 127039240 GGGxGAA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999992 0.999992 1 265 0 0 75.823684 0.311321 0.02 2.856303 73 33 2074 886 60 60 1 0 TT 31.183941 104 0 2695 0 KEEP - 9630033F20Rik NO UVC_2 chr6 135682477 135682477 T C exonic Grin2b nonsynonymous SNV NM_008171:c.A4088G:p.N1363S exonic Grin2b nonsynonymous SNV uc009elq.1:c.A4088G:p.N1363S exonic ENSMUSG00000030209 nonsynonymous SNV ENSMUST00000053880:c.A4088G:p.N1363S 6qG1 NA NA chr6 135682477 TTGxTGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 196 1 0 41.383341 0.226667 0.02 1.234492 58 17 1686 507 60 60 0 0 TT 30.070186 100 0 2696 0 KEEP - Grin2b NO UVC_2 chr6 136765448 136765448 G A intronic Wbp11 NA NA intronic Wbp11 NA NA intronic ENSMUSG00000030216 NA NA 6qG1 NA NA chr6 136765448 CTCxCCC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.780953 0.78106 0.999863 56 0 0 11.067905 0.15625 0.02 -0.297905 27 5 662 147 60 60 0 0 GG 6.006147 20 0 473 0 KEEP - Wbp11 YES UVC_2 chr6 141793962 141793962 T G exonic Slco1a4 nonsynonymous SNV NM_030687:c.A28C:p.T10P exonic Slco1a4 nonsynonymous SNV uc009eos.1:c.A28C:p.T10P exonic ENSMUSG00000030237 nonsynonymous SNV ENSMUST00000032364:c.A28C:p.T10P 6qG2 NA NA chr6 141793962 GGGxTGC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999998 0.999998 1 391 9 0 76.251375 0.260504 0.02 2.740659 88 31 2615 911 60 60 0 0 TT 61.349825 204 0 5586 0 KEEP - Slco1a4 NO UVC_2 chr6 145182876 145182876 T C exonic Kras nonsynonymous SNV NM_021284:c.A182G:p.Q61R exonic "Kras,Nras" nonsynonymous SNV uc009erh.2:c.A182G:p.Q61R exonic ENSMUSG00000030265 nonsynonymous SNV ENSMUST00000111709:c.A182G:p.Q61R 6qG3 NA NA chr6 145182876 TCTxGAC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.38738 0.387407 0.999931 50 1 0 7.864492 0.2 0.02 -0.175393 16 4 481 103 60 60 0 0 TT 7.217605 24 0 650 0 KEEP - Kras NO UVC_2 chr6 148186355 148186355 C T exonic Tmtc1 synonymous SNV NM_198967:c.G2790A:p.E930E exonic Tmtc1 synonymous SNV uc009eti.2:c.G2676A:p.E892E exonic ENSMUSG00000030306 synonymous SNV ENSMUST00000100772:c.G2676A:p.E892E 6qG3 NA NA chr6 148186355 CCTxTCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 97 0 0 94.805105 0.789474 0.02 -0.333214 8 30 236 890 60 60 0 0 CC 12.634748 42 0 1202 0 KEEP - Tmtc1 YES UVC_2 chr6 17508790 17508790 C T exonic Met nonsynonymous SNV NM_008591:c.C3416T:p.S1139L exonic Met nonsynonymous SNV uc009azr.1:c.C3416T:p.S1139L exonic ENSMUSG00000009376 nonsynonymous SNV ENSMUST00000080469:c.C3416T:p.S1139L 6qA2 NA NA chr6 17508790 TCTxACT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 81 0 0 49.797189 0.566667 0.02 -0.271827 13 17 384 506 60 60 0 0 CC 11.123437 37 0 1048 0 KEEP + Met YES UVC_2 chr6 28838053 28838053 A G intronic Snd1 NA NA intronic Snd1 NA NA intronic ENSMUSG00000001424 NA NA 6qA3.3 NA NA chr6 28838053 ACCxCTT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.994422 0.994422 1 192 2 0 31.763022 0.242424 0.02 1.21492 50 16 1478 400 60 60 0 0 AA 28.862723 96 0 2581 0 KEEP + Snd1 NO UVC_2 chr6 29396984 29396984 T C exonic Flnc nonsynonymous SNV NM_001081185:c.T3109C:p.Y1037H exonic Flnc nonsynonymous SNV uc009bdn.1:c.T3109C:p.Y1037H exonic ENSMUSG00000068699 nonsynonymous SNV ENSMUST00000065090:c.T3109C:p.Y1037H 6qA3.3 NA NA chr6 29396984 CCTxACA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998465 0.998465 1 147 0 0 54.410151 0.28 0.02 1.333415 54 21 1548 637 60 60 0 0 TT 18.945273 63 0 1693 0 KEEP + Flnc NO UVC_2 chr6 31013010 31013010 T C upstream;downstream Mir29a;Mir29b-1 NA NA upstream;downstream Mir29a;Mir29b-1 NA NA upstream;downstream ENSMUSG00000065610;ENSMUSG00000065604 NA NA 6qA3.3 NA NA chr6 31013010 AAGxAGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.94839 0.948402 0.999988 81 0 0 29.706113 0.25 0.02 -0.420913 36 12 1016 357 60 60 0 0 TT 8.118217 27 0 715 0 KEEP NA Mir29a NO UVC_2 chr6 38008842 38008842 C T exonic Atp6v0a4 synonymous SNV NM_080467:c.G1791A:p.K597K exonic Atp6v0a4 synonymous SNV uc009bjp.2:c.G1791A:p.K597K exonic ENSMUSG00000038600 synonymous SNV ENSMUST00000040259:c.G1791A:p.K597K 6qB1 NA NA chr6 38008842 CCAxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999997 66 1 0 14.14648 0.214286 0.02 -0.245553 22 6 641 176 60 60 0 0 CC 9.323897 31 0 856 0 KEEP - Atp6v0a4 YES UVC_2 chr6 38078569 38078569 T C exonic D630045J12Rik nonsynonymous SNV NM_194061:c.A5575G:p.M1859V exonic "D630045J12Rik,mKIAA1549" nonsynonymous SNV uc009bjr.2:c.A823G:p.M275V exonic ENSMUSG00000063455 nonsynonymous SNV ENSMUST00000117556:c.A4738G:p.M1580V 6qB1 NA NA chr6 38078569 GCAxGTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.043633 0.043787 0.99649 27 0 0 7.254126 0.428571 0.02 -0.061377 4 3 115 79 60 60 0 0 TT 4.51106 15 0 405 0 KEEP - D630045J12Rik NO UVC_2 chr6 41811826 41811826 A T intronic Sval2 NA NA intronic Sval2 NA NA UTR5 ENSMUSG00000014104 NA NA 6qB2.1 NA NA chr6 41811826 TCCxATA A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 81 0 0 47.126469 0.571429 0.02 -0.245583 12 16 362 478 60 60 0 0 AA 11.42967 38 0 1052 0 KEEP + Sval2 NO UVC_2 chr6 4469347 4469347 T C splicing Col1a2(NM_007743:exon16:c.810+2T>C) NA NA splicing Col1a2(uc009avm.1:exon16:c.810+2T>C) NA NA splicing "ENSMUSG00000029661(ENSMUST00000031668:exon16:c.810+2T>C,ENSMUST00000169615:exon15:c.507+2T>C)" NA NA 6qA1 NA NA chr6 4469347 AGGxAAA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 150 0 0 35.51271 0.318182 0.02 -0.403015 30 14 866 408 60 60 0 0 TT 22.551676 75 0 2008 0 KEEP + Col1a2 NO UVC_2 chr6 48388881 48388881 T A exonic Zfp467 stopgain SNV NM_001085415:c.A835T:p.K279X exonic Zfp467 stopgain SNV uc009buj.1:c.A229T:p.K77X exonic ENSMUSG00000068551 stopgain SNV ENSMUST00000114560:c.A835T:p.K279X 6qB2.3 NA NA chr6 48388881 GTTxCTC T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 184 1 0 156.052712 0.632184 0.02 1.129315 32 55 960 1547 60 60 0 0 TT 24.297842 81 0 2200 0 KEEP - Zfp467 NO UVC_2 chr6 56087444 56087444 G A exonic Pde1c nonsynonymous SNV NM_001159952:c.C1450T:p.P484S exonic Pde1c nonsynonymous SNV uc009cbd.2:c.C1366T:p.P456S exonic ENSMUSG00000004347 nonsynonymous SNV ENSMUST00000164037:c.C1450T:p.P484S 6qB3 NA NA chr6 56087444 TGGxAGC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 82 0 0 8.823768 0.142857 0.02 -0.245596 24 4 739 119 60 60 0 0 GG 12.634096 42 0 1189 0 KEEP - Pde1c YES UVC_2 chr6 56975072 56975072 C T exonic Vmn1r7 nonsynonymous SNV NM_001166710:c.G196A:p.E66K exonic Vmn1r7 nonsynonymous SNV uc012emm.1:c.G196A:p.E66K exonic ENSMUSG00000061481 nonsynonymous SNV ENSMUST00000075534:c.G196A:p.E66K 6qB3 "Score=0.940863;Name=No.93687,chr6:56985812" NA chr6 56975072 ACTxAAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99993 0.99993 1 390 4 173 9.258782 0.064935 0.02 1.050251 72 5 2197 149 60 36 0 0 CC 71.262045 237 0 6741 0 KEEP - Vmn1r7 YES UVC_2 chr6 65042480 65042480 G A intronic Smarcad1 NA NA intronic Smarcad1 NA NA intronic ENSMUSG00000029920 NA NA 6qC1 NA NA chr6 65042480 TTTxATT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865745 0.865745 1 84 0 0 56.305352 0.512821 0.02 -0.342022 19 20 576 585 60 60 0 0 GG 11.432056 38 0 1100 0 KEEP + Smarcad1 YES UVC_2 chr6 66503747 66503747 C A exonic Vmn1r32 nonsynonymous SNV NM_134170:c.G38T:p.G13V exonic Vmn1r32 nonsynonymous SNV uc009cep.1:c.G38T:p.G13V exonic ENSMUSG00000062905 nonsynonymous SNV ENSMUST00000079584:c.G38T:p.G13V 6qC1 NA NA chr6 66503747 AGTxCAA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 151 0 0 43.7345 0.276923 0.02 1.22349 47 18 1397 518 60 60 0 0 CC 24.664456 82 0 2297 0 KEEP - Vmn1r32 NO UVC_2 chr6 66503748 66503748 C T exonic Vmn1r32 nonsynonymous SNV NM_134170:c.G37A:p.G13R exonic Vmn1r32 nonsynonymous SNV uc009cep.1:c.G37A:p.G13R exonic ENSMUSG00000062905 nonsynonymous SNV ENSMUST00000079584:c.G37A:p.G13R 6qC1 NA NA chr6 66503748 GTCxAAC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 149 0 0 41.190932 0.261538 0.02 1.223438 48 17 1451 493 60 60 0 0 CC 24.06637 80 0 2294 0 KEEP - Vmn1r32 YES UVC_2 chr6 67242580 67242580 A G exonic Il12rb2 nonsynonymous SNV NM_008354:c.T2242C:p.Y748H exonic Il12rb2 nonsynonymous SNV uc009cfo.1:c.T2242C:p.Y748H exonic ENSMUSG00000018341 nonsynonymous SNV ENSMUST00000117441:c.T1240C:p.Y414H 6qC1 NA NA chr6 67242580 AGTxGCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 121 0 0 34.961597 0.241379 0.02 1.383509 44 14 1287 422 60 60 0 0 AA 14.433468 48 0 1300 0 KEEP - Il12rb2 NO UVC_2 chr6 82863644 82863644 A G exonic Sema4f synonymous SNV NM_011350:c.T2175C:p.S725S exonic Sema4f synonymous SNV uc012enu.1:c.T1467C:p.S489S exonic ENSMUSG00000000627 synonymous SNV ENSMUST00000000641:c.T2175C:p.S725S 6qC3 NA NA chr6 82863644 AGGxGAG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641346 0.641347 0.999999 78 2 0 20.342107 0.285714 0.02 -0.245584 20 8 612 238 60 60 0 0 AA 10.525387 35 0 953 0 KEEP - Sema4f NO UVC_2 chr6 83348552 83348552 C A intronic Tet3 NA NA UTR3 Tet3 NA NA intronic ENSMUSG00000034832 NA NA 6qC3 NA NA chr6 83348552 ACCxTAC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999998 68 0 0 48.590778 0.695652 0.02 -0.201723 7 16 212 471 60 60 0 0 CC 9.914844 33 0 919 0 KEEP - Tet3 NO UVC_2 chr6 83352650 83352650 G A intronic Tet3 NA NA intronic Tet3 NA NA intronic ENSMUSG00000034832 NA NA 6qC3 NA NA chr6 83352650 ACGxACA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 137 0 0 210.894539 0.96875 0.02 1.429777 2 62 62 1852 60 60 0 0 GG 15.942907 53 0 1503 0 KEEP - Tet3 YES UVC_2 chr6 87629181 87629181 G A ncRNA_intronic 1810020O05Rik NA NA ncRNA_exonic AK042791 NA NA ncRNA_exonic ENSMUSG00000071332 NA NA 6qD1 NA NA chr6 87629181 CTGxAGT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 86 0 0 101.252043 0.967742 0.02 -0.280423 1 30 30 889 60 60 0 0 GG 12.324285 41 0 1151 0 KEEP + 1810020O05Rik YES UVC_2 chr6 93636560 93636560 G A intronic Magi1 NA NA intronic Magi1 NA NA intronic ENSMUSG00000045095 NA NA 6qD1 NA NA chr6 93636560 GAAxCAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 90 0 0 30.869763 0.27907 0.02 -0.377151 31 12 939 362 60 60 0 0 GG 11.430948 38 0 1078 0 KEEP - Magi1 YES UVC_2 chr6 94450470 94450470 T C intronic Slc25a26 NA NA intronic Slc25a26 NA NA intronic ENSMUSG00000045100 NA NA 6qD2 NA NA chr6 94450470 GGGxGGG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 162 0 0 33.212256 0.231884 0.02 1.278434 53 16 1539 418 60 60 0 0 TT 22.544046 75 0 1978 0 KEEP + Slc25a26 NO UVC_2 chr7 107454103 107454103 A T exonic P4ha3 nonsynonymous SNV NM_177161:c.A857T:p.Q286L exonic P4ha3 nonsynonymous SNV uc012fqc.1:c.A443T:p.Q148L exonic ENSMUSG00000051048 nonsynonymous SNV ENSMUST00000138465:c.A458T:p.Q153L 7qE3 NA NA chr7 107454103 TTCxGAG A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 76 0 0 48.006827 0.615385 0.02 -0.228043 10 16 303 479 60 60 0 0 AA 12.031212 40 0 1111 0 KEEP + P4ha3 NO UVC_2 chr7 10756164 10756164 T C exonic Vmn2r52 nonsynonymous SNV NM_001105191:c.A1096G:p.N366D exonic Vmn2r52 nonsynonymous SNV uc012eyq.1:c.A1096G:p.N366D exonic ENSMUSG00000091930 nonsynonymous SNV ENSMUST00000164918:c.A1096G:p.N366D 7qA1 "Score=0.907661;Name=No.96176,chr7:5427857" NA chr7 10756164 AGTxACA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 87 0 0 41.156454 0.482759 0.02 -0.254357 15 14 441 432 60 60 0 0 TT 15.638537 52 0 1412 0 KEEP - Vmn2r52 NO UVC_2 chr7 110335720 110335720 G A exonic Olfr592 nonsynonymous SNV NM_207556:c.G604A:p.G202S exonic Olfr592 nonsynonymous SNV uc009ith.1:c.G604A:p.G202S exonic ENSMUSG00000073956 nonsynonymous SNV ENSMUST00000098207:c.G604A:p.G202S 7qE3 NA NA chr7 110335720 TATxGCC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.934492 0.934492 1 110 4 0 153.345118 1 0.02 -0.394654 0 45 0 1319 0 60 0 0 GG 16.538234 55 0 1561 0 KEEP + Olfr592 YES UVC_2 chr7 111820045 111820045 C T exonic Olfr659 synonymous SNV NM_147050:c.C828T:p.C276C exonic Olfr659 synonymous SNV uc009iwv.1:c.C828T:p.C276C exonic ENSMUSG00000073922 synonymous SNV ENSMUST00000098170:c.C828T:p.C276C 7qE3 NA NA chr7 111820045 TTGxCTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.976865 0.976865 1 164 0 0 40.132143 0.290909 0.02 1.4098 39 16 1172 469 60 60 0 0 CC 26.142597 87 0 2368 0 KEEP + Olfr659 YES UVC_2 chr7 112074010 112074010 G T exonic Olfr668 nonsynonymous SNV NM_147059:c.C267A:p.F89L exonic Olfr668 nonsynonymous SNV uc009ixe.1:c.C267A:p.F89L ncRNA_exonic ENSMUSG00000057770 NA NA 7qE3 NA NA chr7 112074010 ATTxAAC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 157 0 0 90.341168 0.464789 0.02 1.368374 38 33 1171 959 60 60 0 0 GG 23.1584 77 0 2189 0 KEEP - Olfr668 NO UVC_2 chr7 114988449 114988449 T G exonic Olfr470 nonsynonymous SNV NM_146425:c.A797C:p.K266T exonic Olfr470 nonsynonymous SNV uc009jbn.1:c.A797C:p.K266T exonic ENSMUSG00000066243 nonsynonymous SNV ENSMUST00000084757:c.A797C:p.K266T 7qE3 "Score=0.945181;Name=No.101613,chr7:114962103" NA chr7 114988449 GATxTGG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 334 2 1 251.624005 0.926829 0.02 1.271982 6 76 171 2247 60 60 0 0 TT 60.796636 206 1 5678 10 KEEP - Olfr470 NO UVC_2 chr7 115098486 115098486 T C exonic Olfr474 synonymous SNV NM_146495:c.T330C:p.S110S exonic Olfr474 synonymous SNV uc009jbq.1:c.T330C:p.S110S exonic ENSMUSG00000072312 synonymous SNV ENSMUST00000054434:c.T330C:p.S110S 7qE3 NA NA chr7 115098486 ATCxGAG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999678 0.999678 1 220 0 0 96.215872 0.430233 0.02 1.137986 49 37 1490 1041 60 60 0 0 TT 34.889766 116 0 3204 0 KEEP + Olfr474 NO UVC_2 chr7 117190504 117190504 A C exonic Ipo7 nonsynonymous SNV NM_181517:c.A1595C:p.K532T exonic Ipo7 nonsynonymous SNV uc009jeu.1:c.A1595C:p.K532T exonic ENSMUSG00000066232 nonsynonymous SNV ENSMUST00000084731:c.A1595C:p.K532T 7qF1 NA NA chr7 117190504 CTAxAGA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229142 0.229173 0.999863 38 1 0 7.275419 0.2 0.02 -0.131316 12 3 346 91 60 60 0 0 AA 6.015799 20 0 557 0 KEEP + Ipo7 NO UVC_2 chr7 119492917 119492917 A T exonic Mical2 nonsynonymous SNV NM_177282:c.A2405T:p.Y802F exonic Mical2 nonsynonymous SNV uc009jgn.2:c.A2405T:p.Y802F exonic ENSMUSG00000038244 nonsynonymous SNV ENSMUST00000050149:c.A2405T:p.Y802F 7qF1 NA NA chr7 119492917 TTTxCTG A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.522161 0.522161 1 90 0 0 21.182984 0.333333 0.02 -0.210479 16 8 458 240 60 60 0 0 AA 15.635087 52 0 1377 0 KEEP + Mical2 NO UVC_2 chr7 128102273 128102273 G A exonic Cdr2 nonsynonymous SNV NM_007672:c.C542T:p.T181I exonic Cdr2 nonsynonymous SNV uc012ftc.1:c.C542T:p.T181I exonic ENSMUSG00000030878 nonsynonymous SNV ENSMUST00000033169:c.C542T:p.T181I 7qF2 NA NA chr7 128102273 GAAxTGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 216 0 0 264.229138 0.963855 0.02 1.164276 3 80 91 2317 60 60 0 0 GG 35.486597 118 0 3200 0 KEEP - Cdr2 YES UVC_2 chr7 129257845 129257845 T A exonic Palb2 nonsynonymous SNV NM_001081238:c.A2728T:p.M910L exonic Palb2 nonsynonymous SNV uc012fth.1:c.A568T:p.M190L exonic ENSMUSG00000044702 nonsynonymous SNV ENSMUST00000063587:c.A568T:p.M190L 7qF3 NA NA chr7 129257845 TCAxGAT T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 77 0 0 48.532239 0.64 0.02 -0.219232 9 16 264 480 60 60 0 0 TT 11.12782 37 0 1007 0 KEEP - Palb2 NO UVC_2 chr7 133268056 133268056 A G intronic Xpo6 NA NA intronic Xpo6 NA NA intronic ENSMUSG00000000131 NA NA 7qF3 NA NA chr7 133268056 ACAxCAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 0.999999 60 0 0 18.809219 0.368421 0.02 -0.16664 12 7 351 209 60 60 0 0 AA 10.826353 36 0 970 0 KEEP - Xpo6 NO UVC_2 chr7 133700351 133700351 T C exonic Eif3c nonsynonymous SNV NM_146200:c.A1460G:p.Y487C exonic Eif3c nonsynonymous SNV uc009jrw.1:c.A1460G:p.Y487C exonic ENSMUSG00000030738 nonsynonymous SNV ENSMUST00000032992:c.A1460G:p.Y487C 7qF3 NA NA chr7 133700351 AGGxAGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 103 0 0 70.797225 0.657143 0.02 -0.30698 12 23 352 696 60 60 0 0 TT 15.332724 51 0 1338 0 KEEP - Eif3c NO UVC_2 chr7 134472198 134472198 G C exonic Itgal nonsynonymous SNV NM_001253872:c.G3053C:p.C1018S exonic Itgal nonsynonymous SNV uc009juy.1:c.G3050C:p.C1017S exonic ENSMUSG00000030830 nonsynonymous SNV ENSMUST00000118405:c.G1862C:p.C621S 7qF3 NA NA chr7 134472198 GCTxTCC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.73962 0.739671 0.999931 63 0 0 33.243692 0.375 0.02 -0.28024 20 12 565 367 60 60 0 0 GG 7.519941 25 0 703 0 KEEP + Itgal NO UVC_2 chr7 13489022 13489022 C T UTR5 Zscan22 NA NA UTR5 Zscan22 NA NA UTR5 ENSMUSG00000054715 NA NA 7qA1 NA NA chr7 13489022 ATTxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 75 2 0 85.966015 0.928571 0.02 -0.245571 2 26 61 767 60 60 0 0 CC 11.417742 38 0 1062 0 KEEP + Zscan22 YES UVC_2 chr7 135587315 135587315 A G intronic Tial1 NA NA intronic Tial1 NA NA intronic ENSMUSG00000030846 NA NA 7qF3 NA NA chr7 135587315 ACAxCTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 86 2 0 45.743346 0.432432 0.02 -0.324495 21 16 609 491 60 60 0 0 AA 11.730637 39 0 1083 0 KEEP - Tial1 NO UVC_2 chr7 13845969 13845969 C A exonic 6330408A02Rik nonsynonymous SNV NM_177312:c.G1608T:p.R536S exonic 6330408A02Rik nonsynonymous SNV uc012ezk.1:c.G300T:p.R100S exonic ENSMUSG00000070814 nonsynonymous SNV ENSMUST00000108532:c.G1608T:p.R536S 7qA1 NA NA chr7 13845969 TACxCTA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 272 2 0 122.026053 0.478261 0.02 1.085309 48 44 1437 1287 60 60 0 0 CC 44.503031 148 0 4109 0 KEEP - 6330408A02Rik NO UVC_2 chr7 140842222 140842222 A G exonic 2700050L05Rik nonsynonymous SNV NM_178115:c.A1318G:p.T440A exonic 2700050L05Rik nonsynonymous SNV uc009kdb.2:c.A1216G:p.T406A exonic ENSMUSG00000039990 nonsynonymous SNV ENSMUST00000051169:c.A1216G:p.T406A 7qF3 NA NA chr7 140842222 ACGxCTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 145 0 0 43.541295 0.4 0.02 -0.359596 24 16 711 476 60 60 0 0 AA 24.658108 82 0 2224 0 KEEP + 2700050L05Rik NO UVC_2 chr7 147287570 147287570 T G splicing Fuom(NM_026928:exon3:c.86-2A>C) NA NA splicing "1810014F10Rik(uc009kgu.1:exon3:c.86-2A>C,uc009kgw.1:exon3:c.86-2A>C)" NA NA splicing "ENSMUSG00000025466(ENSMUST00000120034:exon3:c.86-2A>C,ENSMUST00000148716:exon3:c.86-2A>C,ENSMUST00000026539:exon3:c.86-2A>C,ENSMUST00000142105:exon3:c.71-2A>C,ENSMUST00000128527:exon3:c.39-2A>C,ENSMUST00000097968:exon3:c.86-2A>C,ENSMUST00000121115:exon3:c.86-2A>C)" NA NA 7qF4 NA NA chr7 147287570 GACxGGA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 89 0 0 18.580769 0.333333 0.02 -0.219234 16 8 479 214 60 60 0 0 TT 13.820338 46 0 1256 0 KEEP - Fuom NO UVC_2 chr7 148975718 148975718 T G intronic Muc5ac NA NA intronic Muc5ac NA NA intronic ENSMUSG00000037974 NA NA 7qF5 NA NA chr7 148975718 AGCxTTT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 145 0 0 109.466524 0.945946 0.02 -0.324174 2 35 57 962 60 60 0 0 TT 25.56353 85 0 2324 0 KEEP + Muc5ac NO UVC_2 chr7 150761828 150761828 A G exonic Cars synonymous SNV NM_001252593:c.T777C:p.G259G exonic Cars synonymous SNV uc009kpo.1:c.T777C:p.G259G exonic ENSMUSG00000010755 synonymous SNV ENSMUST00000105909:c.T777C:p.G259G 7qF5 NA NA chr7 150761828 ATAxCCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 209 0 0 45.033744 0.276923 0.02 1.322145 47 18 1380 531 60 60 0 0 AA 35.189867 117 0 3223 0 KEEP - Cars NO UVC_2 chr7 16489151 16489151 A C exonic Crxos1 nonsynonymous SNV NM_001145190:c.A295C:p.S99R exonic "Crxos1,Egam-1c" nonsynonymous SNV uc012ezz.1:c.A295C:p.S99R exonic ENSMUSG00000074365 nonsynonymous SNV ENSMUST00000171280:c.A295C:p.S99R 7qA2 NA NA chr7 16489151 AGAxGTT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998867 0.998867 1 232 1 8 39.988891 0.25974 0.02 1.020031 57 20 1741 496 60 60 0 0 AA 39.702809 132 0 3672 0 KEEP + Crxos1 NO UVC_2 chr7 17381487 17381487 C T exonic Slc1a5 synonymous SNV NM_009201:c.C1410T:p.I470I exonic Slc1a5 synonymous SNV uc009fib.1:c.C1410T:p.I470I exonic ENSMUSG00000001918 synonymous SNV ENSMUST00000108496:c.C1410T:p.I470I 7qA2 NA NA chr7 17381487 GATxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 99 0 0 141.757725 0.976744 0.02 -0.377115 1 42 31 1238 60 60 0 0 CC 12.633025 42 0 1189 0 KEEP + Slc1a5 YES UVC_2 chr7 17591463 17591463 T C exonic Ppp5c nonsynonymous SNV NM_011155:c.A1301G:p.Y434C exonic Ppp5c nonsynonymous SNV uc009fiq.2:c.A1301G:p.Y434C exonic ENSMUSG00000003099 nonsynonymous SNV ENSMUST00000003183:c.A1301G:p.Y434C 7qA2 NA NA chr7 17591463 TCGxAGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353898 0.353947 0.999863 41 0 0 21.799859 0.421053 0.02 -0.166636 11 8 321 236 60 60 0 0 TT 6.013679 20 0 526 0 KEEP - Ppp5c NO UVC_2 chr7 17795782 17795782 C T exonic Psg29 synonymous SNV NM_054064:c.C867T:p.L289L exonic Psg29 synonymous SNV uc012fam.1:c.C867T:p.L289L exonic ENSMUSG00000023159 synonymous SNV ENSMUST00000075934:c.C867T:p.L289L 7qA2 NA NA chr7 17795782 TCTxCTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.967425 0.967425 1 134 2 0 161.0065 0.923077 0.02 1.536442 4 48 98 1438 60 60 0 0 CC 20.092218 67 0 1877 0 KEEP + Psg29 YES UVC_2 chr7 19662035 19662035 C T exonic Dmwd synonymous SNV NM_010058:c.C417T:p.R139R exonic Dmwd synonymous SNV uc012fax.1:c.C417T:p.R139R exonic ENSMUSG00000030410 synonymous SNV ENSMUST00000032570:c.C417T:p.R139R 7qA3 NA NA chr7 19662035 CCGxAGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 96 2 0 37.471962 0.466667 0.02 -0.263087 16 14 484 398 60 60 0 0 CC 14.439275 48 0 1364 0 KEEP + Dmwd YES UVC_2 chr7 19742858 19742858 C T exonic Gipr synonymous SNV NM_001080815:c.G1242A:p.E414E exonic Gipr synonymous SNV uc009fkw.1:c.G1242A:p.E414E exonic ENSMUSG00000030406 synonymous SNV ENSMUST00000094790:c.G1242A:p.E414E 7qA3 NA NA chr7 19742858 CTGxTCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 90 0 0 29.271285 0.333333 0.02 -0.324402 24 12 698 335 60 60 0 0 CC 15.630641 52 0 1419 0 KEEP - Gipr YES UVC_2 chr7 24962772 24962772 G C exonic Zfp114 nonsynonymous SNV NM_001029933:c.G19C:p.A7P exonic Zfp114 nonsynonymous SNV uc012ffh.1:c.G22C:p.A8P exonic ENSMUSG00000068962 nonsynonymous SNV ENSMUST00000108440:c.G22C:p.A8P 7qA3 NA NA chr7 24962772 GAGxCAG G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.877708 0.877708 1 143 0 18 24.260764 0.263158 0.02 -0.350817 28 10 847 290 60 60 0 1 GG 26.14323 87 0 2375 0 KEEP + Zfp114 NO UVC_2 chr7 26455566 26455566 A G exonic Tmem91 nonsynonymous SNV NM_177102:c.T299C:p.V100A exonic Tmem91 nonsynonymous SNV uc009ftk.2:c.T299C:p.V100A exonic ENSMUSG00000061702 nonsynonymous SNV ENSMUST00000079439:c.T299C:p.V100A 7qA3 NA NA chr7 26455566 AATxCCG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 90 0 0 44.502155 0.555556 0.02 -0.236766 12 15 334 454 60 60 0 0 AA 15.569808 52 0 1322 0 KEEP - Tmem91 NO UVC_2 chr7 29164201 29164201 T C exonic Zfp36 nonsynonymous SNV NM_011756:c.A16G:p.I6V exonic Zfp36 nonsynonymous SNV uc009fys.1:c.A16G:p.I6V exonic ENSMUSG00000044786 nonsynonymous SNV ENSMUST00000051241:c.A16G:p.I6V 7qA3 NA NA chr7 29164201 AGAxGGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 1 141 0 0 21.837887 0.3125 0.02 -0.280586 22 10 648 257 60 60 0 0 TT 25.262804 84 0 2284 0 KEEP - Zfp36 NO UVC_2 chr7 29605150 29605150 A G intronic Hnrnpl NA NA intronic Hnrnpl NA NA intronic ENSMUSG00000015165 NA NA 7qA3 NA NA chr7 29605150 GCTxAAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054133 0.054137 0.999931 42 0 0 9.025136 0.5 0.02 -0.070168 3 3 86 94 60 60 0 0 AA 7.518479 25 0 676 0 KEEP + Hnrnpl NO UVC_2 chr7 29696592 29696592 T C exonic Actn4 nonsynonymous SNV NM_021895:c.A739G:p.I247V exonic Actn4 nonsynonymous SNV uc009gah.1:c.A739G:p.I247V exonic ENSMUSG00000054808 nonsynonymous SNV ENSMUST00000068045:c.A739G:p.I247V 7qA3 NA NA chr7 29696592 CGAxGTC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 136 2 0 56.52435 0.55814 0.02 -0.376599 19 24 549 579 60 60 0 0 TT 24.046904 80 0 2145 0 KEEP - Actn4 NO UVC_2 chr7 31640604 31640604 C A exonic Ffar3 synonymous SNV NM_001033316:c.G309T:p.T103T exonic Ffar3 synonymous SNV uc009ggp.1:c.G309T:p.T103T exonic ENSMUSG00000019429 synonymous SNV ENSMUST00000094583:c.G309T:p.T103T 7qB1 NA NA chr7 31640604 CGCxGTC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457755 0.457757 0.999997 56 0 0 70.861941 0.954545 0.02 -0.19294 1 21 22 626 60 60 0 0 CC 8.708042 29 0 681 0 KEEP - Ffar3 NO UVC_2 chr7 31839289 31839289 C T intronic Fxyd1 NA NA intronic Fxyd1 NA NA intronic ENSMUSG00000036570 NA NA 7qB1 NA NA chr7 31839289 CCAxATG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 75 0 0 19.547372 0.307692 0.02 -0.228015 18 8 527 227 60 60 0 0 CC 11.701927 39 0 1034 0 KEEP - Fxyd1 YES UVC_2 chr7 48299948 48299948 G A exonic Gm4884 nonsynonymous SNV NM_183166:c.G1970A:p.R657Q exonic Gm4884 nonsynonymous SNV uc009glj.1:c.G1970A:p.R657Q exonic ENSMUSG00000048312 nonsynonymous SNV ENSMUST00000164422:c.G1970A:p.R657Q 7qB3 "Score=0.936278;Name=No.101148,chr7:46467598" NA chr7 48299948 GGCxATC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 191 1 1 7.594833 0.068966 0.02 1.285096 54 4 1507 120 60 36 0 0 GG 35.75561 119 0 3099 0 KEEP + Gm4884 YES UVC_2 chr7 4989910 4989910 C T intronic Zfp784 NA NA intronic Zfp784 NA NA intronic ENSMUSG00000043290 NA NA 7qA1 NA NA chr7 4989910 CCCxGGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.138789 0.139832 0.99254 23 0 0 32.92126 0.833333 0.02 -0.105252 2 10 58 305 60 60 0 0 CC 2.705766 9 0 239 0 KEEP - Zfp784 YES UVC_2 chr7 51357737 51357737 A C exonic Klk1b21 synonymous SNV NM_010642:c.A4C:p.R2R exonic Klk1b21 synonymous SNV uc009goh.1:c.A4C:p.R2R exonic ENSMUSG00000066516 synonymous SNV ENSMUST00000085455:c.A4C:p.R2R 7qB4 NA NA chr7 51357737 ATGxGGT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 128 26 12 77.691911 0.5 0.02 1.250027 31 31 953 816 60 60 0 0 AA 14.739193 49 0 1375 0 KEEP + Klk1b21 NO UVC_2 chr7 51791065 51791065 G A intronic Pold1 NA NA intronic Pold1 NA NA intronic ENSMUSG00000038644 NA NA 7qB4 NA NA chr7 51791065 CACxCAC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.800245 0.800245 1 92 0 0 51.460328 0.514286 0.02 -0.306877 17 18 445 534 60 60 0 0 GG 11.412811 38 0 946 0 KEEP - Pold1 YES UVC_2 chr7 52134806 52134806 A G exonic Med25 nonsynonymous SNV NM_029365:c.T2219C:p.I740T exonic Med25 nonsynonymous SNV uc009grq.1:c.T1838C:p.I613T exonic ENSMUSG00000002968 nonsynonymous SNV ENSMUST00000163197:c.T1838C:p.I613T 7qB4 NA NA chr7 52134806 AGGxTGT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 93 0 0 43.70016 0.516129 0.02 -0.271834 15 16 448 454 60 60 0 0 AA 11.726825 39 0 1053 0 KEEP - Med25 NO UVC_2 chr7 52947288 52947288 C T exonic Ntn5 synonymous SNV NM_001033356:c.C864T:p.T288T exonic Ntn5 synonymous SNV uc009gwp.1:c.C864T:p.T288T exonic ENSMUSG00000070564 synonymous SNV ENSMUST00000107742:c.C864T:p.T288T 7qB4 NA NA chr7 52947288 TACxCCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 178 0 0 125.410265 0.973684 0.02 -0.332315 1 37 31 1099 60 60 0 0 CC 33.376314 111 0 3094 0 KEEP - Ntn5 YES UVC_2 chr7 53363544 53363544 C T exonic Abcc8 synonymous SNV NM_011510:c.G4050A:p.K1350K exonic Abcc8 synonymous SNV uc009gyd.1:c.G2025A:p.K675K exonic ENSMUSG00000040136 synonymous SNV ENSMUST00000033123:c.G4050A:p.K1350K 7qB4 NA NA chr7 53363544 AATxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 97 2 0 104.276264 0.911765 0.02 -0.298218 3 31 90 939 60 60 0 0 CC 15.035562 50 0 1416 0 KEEP - Abcc8 YES UVC_2 chr7 53409901 53409901 G A exonic Abcc8 synonymous SNV NM_011510:c.C1218T:p.N406N exonic Abcc8 synonymous SNV uc009gye.1:c.C1218T:p.N406N exonic ENSMUSG00000040136 synonymous SNV ENSMUST00000033123:c.C1218T:p.N406N 7qB4 NA NA chr7 53409901 CAGxTTG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.582928 0.58293 0.999997 64 0 0 40.284257 0.538462 0.02 -0.228028 12 14 348 414 60 60 0 0 GG 8.421335 28 0 767 0 KEEP - Abcc8 YES UVC_2 chr7 7504332 7504332 A G exonic Vmn2r33 synonymous SNV NM_001105065:c.T1932C:p.G644G exonic Vmn2r33 synonymous SNV uc012exu.1:c.T1932C:p.G644G exonic ENSMUSG00000090895 synonymous SNV ENSMUST00000165921:c.T1932C:p.G644G 7qA1 "Score=0.99278;Name=No.96630,chr7:8721343" NA chr7 7504332 ATGxCCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1235 2 481 23.195722 0.087838 0.02 2.486896 135 13 3885 360 32 27 0 0 AA 230.959365 768 0 20849 0 KEEP - Vmn2r33 NO UVC_2 chr7 88934209 88934209 A G intronic 3110040N11Rik NA NA intronic 3110040N11Rik NA NA exonic ENSMUSG00000025102 nonsynonymous SNV ENSMUST00000152620:c.T62C:p.V21A 7qD3 NA NA chr7 88934209 CCCxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 117 0 0 26.295681 0.324324 0.02 -0.324382 25 12 733 307 60 60 0 0 AA 18.013322 60 0 1563 0 KEEP - 3110040N11Rik NO UVC_2 chr8 107860481 107860481 A C intronic Fhod1 NA NA intronic Fhod1 NA NA intronic ENSMUSG00000014778 NA NA 8qD3 NA NA chr8 107860481 TTAxCAG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999907 0.999907 1 176 0 0 49.440937 0.223404 0.02 1.067811 73 21 2130 611 60 60 0 0 AA 18.908775 63 0 1667 0 KEEP - Fhod1 NO UVC_2 chr8 108296060 108296060 A T exonic Ranbp10 nonsynonymous SNV NM_145824:c.T1751A:p.V584E exonic Ranbp10 nonsynonymous SNV uc009nec.1:c.T1751A:p.V584E exonic ENSMUSG00000037415 nonsynonymous SNV ENSMUST00000041400:c.T1751A:p.V584E 8qD3 NA NA chr8 108296060 CCTxCTG A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 125 0 0 96.335663 0.532258 0.02 1.44738 29 33 815 992 60 60 0 0 AA 13.532384 45 0 1205 0 KEEP - Ranbp10 NO UVC_2 chr8 109643227 109643227 A C intergenic "Terf2(dist=22782),Cyb5b(dist=31334)" NA NA intergenic "Terf2(dist=22782),Cyb5b(dist=31334)" NA NA exonic ENSMUSG00000040399 nonsynonymous SNV ENSMUST00000046116:c.A108C:p.Q36H 8qD3 NA NA chr8 109643227 GCAxGCA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 114 0 0 62.585669 0.520833 0.02 -0.42071 23 25 680 651 60 60 0 0 AA 16.842995 56 0 1554 0 KEEP NA Terf2 NO UVC_2 chr8 109786796 109786796 C T intergenic "Cyb5b(dist=75426),Nfat5(dist=30574)" NA NA intergenic "AK015813(dist=50445),Nfat5(dist=30574)" NA NA intergenic "ENSMUSG00000031924(dist=75426),ENSMUSG00000003847(dist=30574)" NA NA 8qD3 NA NA chr8 109786796 GCTxGAA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.996724 0.996724 1 234 7 93 36.689636 0.214286 0.02 1.280094 55 15 1539 453 60 60 0 0 CC 35.772704 119 0 3175 0 KEEP NA Cyb5b YES UVC_2 chr8 110108152 110108152 A G exonic Psmd7 nonsynonymous SNV NM_010817:c.T359C:p.V120A exonic Psmd7 nonsynonymous SNV uc009nhz.2:c.T359C:p.V120A exonic ENSMUSG00000039067 nonsynonymous SNV ENSMUST00000044106:c.T359C:p.V120A 8qD3 NA NA chr8 110108152 AATxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 394 5 0 10.279946 0.045455 0.02 2.626798 126 6 3612 180 60 60 0 0 AA 64.286326 218 1 5758 11 KEEP - Psmd7 NO UVC_2 chr8 113056854 113056854 A G exonic Hydin synonymous SNV NM_172916:c.A7557G:p.V2519V exonic Hydin synonymous SNV uc009nks.1:c.A7557G:p.V2519V exonic ENSMUSG00000059854 synonymous SNV ENSMUST00000043141:c.A7557G:p.V2519V 8qE1 NA NA chr8 113056854 GGTxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.926637 0.92664 0.999997 77 0 0 18.675298 0.177778 0.02 -0.394537 37 8 1041 240 60 60 0 0 AA 8.386272 28 0 736 0 KEEP + Hydin NO UVC_2 chr8 119554517 119554517 G A exonic Pkd1l2 nonsynonymous SNV NM_029686:c.C4678T:p.L1560F exonic Pkd1l2 nonsynonymous SNV uc012glk.1:c.C1363T:p.L455F exonic ENSMUSG00000034416 nonsynonymous SNV ENSMUST00000109093:c.C4681T:p.L1561F 8qE1 NA NA chr8 119554517 GAAxCAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 90 0 0 66.307595 0.547619 0.02 -0.37714 19 23 579 679 60 60 0 0 GG 11.130135 37 0 1050 0 KEEP - Pkd1l2 YES UVC_2 chr8 122157121 122157121 C T exonic Kcng4 nonsynonymous SNV NM_025734:c.G415A:p.A139T exonic Kcng4 nonsynonymous SNV uc009nqb.1:c.G415A:p.A139T exonic ENSMUSG00000045246 nonsynonymous SNV ENSMUST00000061828:c.G415A:p.A139T 8qE1 NA NA chr8 122157121 GGGxGCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.993703 0.993703 1 162 0 0 42.217977 0.261538 0.02 1.32367 48 17 1281 503 60 60 0 0 CC 20.985668 70 0 1738 0 KEEP - Kcng4 YES UVC_2 chr8 125498656 125498656 T G UTR5 Ankrd11 NA NA exonic Ankrd11 nonsynonymous SNV uc009nub.2:c.A98C:p.E33A UTR5 ENSMUSG00000035569 NA NA 8qE1 NA NA chr8 125498656 TGCxCAG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.739671 0.739671 0.999999 88 2 0 28.204468 0.34375 0.02 -0.280668 21 11 646 319 60 60 0 0 TT 10.82872 36 0 1008 0 KEEP - Ankrd11 NO UVC_2 chr8 128015589 128015589 T C exonic Sipa1l2 nonsynonymous SNV NM_001081337:c.A908G:p.H303R exonic Sipa1l2 nonsynonymous SNV uc009nye.1:c.A908G:p.H303R exonic ENSMUSG00000001995 nonsynonymous SNV ENSMUST00000047850:c.A908G:p.H303R 8qE2 NA NA chr8 128015589 TCAxGCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999881 0.999881 1 153 1 0 82.415505 0.391304 0.02 0.98685 56 36 1661 920 60 60 0 0 TT 15.337232 51 0 1375 0 KEEP - Sipa1l2 NO UVC_2 chr8 128015623 128015623 G C exonic Sipa1l2 nonsynonymous SNV NM_001081337:c.C874G:p.L292V exonic Sipa1l2 nonsynonymous SNV uc009nye.1:c.C874G:p.L292V exonic ENSMUSG00000001995 nonsynonymous SNV ENSMUST00000047850:c.C874G:p.L292V 8qE2 NA NA chr8 128015623 AGAxTGA G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999218 0.999218 1 140 1 0 68.698075 0.325 0.02 1.289483 54 26 1568 782 60 60 0 0 GG 16.24165 54 0 1491 0 KEEP - Sipa1l2 NO UVC_2 chr8 12926698 12926698 G A intronic Mcf2l NA NA intronic Mcf2l NA NA exonic ENSMUSG00000031442 nonsynonymous SNV ENSMUST00000098927:c.G56A:p.R19K 8qA1.1 NA NA chr8 12926698 CAAxGAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999987 0.999987 1 234 2 0 182.184101 0.580952 0.02 2.953588 44 61 1314 1841 60 60 0 0 GG 28.27691 94 0 2673 0 KEEP + Mcf2l YES UVC_2 chr8 13369424 13369424 A G intronic Tfdp1 NA NA intronic Tfdp1 NA NA intronic ENSMUSG00000038482 NA NA 8qA1.1 NA NA chr8 13369424 GACxCGT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 91 0 0 28.090377 0.264151 0.02 1.427516 39 14 1156 347 60 60 0 0 AA 9.624048 32 0 871 0 KEEP + Tfdp1 NO UVC_2 chr8 15070752 15070752 T C exonic Myom2 nonsynonymous SNV NM_008664:c.T641C:p.L214P exonic Myom2 nonsynonymous SNV uc009kzm.2:c.T641C:p.L214P exonic ENSMUSG00000031461 nonsynonymous SNV ENSMUST00000033842:c.T641C:p.L214P 8qA1.1 NA NA chr8 15070752 CTCxGGA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954479 0.954491 0.999988 82 0 0 32.682999 0.326531 0.02 -0.429573 33 16 977 385 60 60 0 0 TT 8.098795 27 0 707 0 KEEP + Myom2 NO UVC_2 chr8 19026495 19026495 G A exonic Defb38 nonsynonymous SNV NM_183036:c.C35T:p.S12F exonic Defb38 nonsynonymous SNV uc009laa.1:c.C35T:p.S12F exonic ENSMUSG00000053790 nonsynonymous SNV ENSMUST00000066416:c.C35T:p.S12F 8qA1.3 NA NA chr8 19026495 AGAxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 84 2 0 27.564305 0.4 0.02 -0.219247 15 10 450 301 60 60 0 0 GG 13.236334 44 0 1266 0 KEEP - Defb38 YES UVC_2 chr8 19873686 19873686 C T ncRNA_exonic 6820431F20Rik NA NA exonic 6820431F20Rik synonymous SNV uc009lav.1:c.G105A:p.A35A ncRNA_exonic ENSMUSG00000071796 NA NA 8qA1.3 "Score=0.983722;Name=No.103895,chr8:19678438" NA chr8 19873686 TCCxGCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 621 4 300 13.665026 0.068966 0.02 2.670924 108 8 2551 224 22 20 0 0 CC 104.189996 347 0 8428 0 KEEP - 6820431F20Rik YES UVC_2 chr8 19892709 19892709 C T ncRNA_intronic 6820431F20Rik NA NA exonic 5330429B09Rik nonsynonymous SNV uc009lax.2:c.G298A:p.G100S ncRNA_exonic ENSMUSG00000071796 NA NA 8qA1.3 "Score=0.986544;Name=No.103912,chr8:19775047" NA chr8 19892709 GGCxCGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423418 0.423478 0.99986 49 2 6 12.69593 0.238095 0.02 -0.183177 16 5 446 153 60 37 0 0 CC 6.917235 23 0 630 0 KEEP - 6820431F20Rik YES UVC_2 chr8 19892983 19892983 T A ncRNA_exonic 6820431F20Rik NA NA exonic 5330429B09Rik synonymous SNV uc009lax.2:c.A24T:p.A8A ncRNA_exonic ENSMUSG00000071796 NA NA 8qA1.3 "Score=0.986544;Name=No.103912,chr8:19775047" NA chr8 19892983 CAAxGCC T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 179 0 33 12.502284 0.1 0.02 1.366762 54 6 1541 181 60 23 0 0 CT 14.434143 48 0 1281 0 KEEP - 6820431F20Rik NO UVC_2 chr8 20019797 20019797 G A ncRNA_intronic "2610005L07Rik,6820431F20Rik" NA NA exonic Gm10348 stopgain SNV uc009lbg.1:c.C478T:p.R160X ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20019797 ATCxGAA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 209 4 46 12.155265 0.2 0.02 -0.219168 20 5 536 152 60 23 0 0 GG 42.987507 143 0 3781 0 KEEP - 2610005L07Rik YES UVC_2 chr8 20019919 20019919 G A ncRNA_intronic "2610005L07Rik,6820431F20Rik" NA NA exonic Gm10348 nonsynonymous SNV uc009lbg.1:c.C356T:p.A119V ncRNA_exonic ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20019919 GCGxCAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.229173 0.229173 1 65 2 7 6.68258 0.230769 0.02 -0.131435 10 3 281 83 60 36 0 0 GG 12.273536 41 0 1062 0 KEEP - 2610005L07Rik YES UVC_2 chr8 20020448 20020448 G T upstream "2610005L07Rik,6820431F20Rik" NA NA upstream Gm10348 NA NA upstream ENSMUSG00000071793 NA NA 8qA1.3 "Score=0.987237;Name=No.103910,chr8:19767170" NA chr8 20020448 CGCxCCC G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999997 0.999997 1 292 1 19 33.792145 0.137931 0.02 2.866894 100 16 2831 463 60 60 0 0 GG 42.394179 141 0 3747 0 KEEP NA 2610005L07Rik NO UVC_2 chr8 23770823 23770823 C T UTR3 Ikbkb NA NA ncRNA_exonic IKKbeta NA NA UTR3 ENSMUSG00000031537 NA NA 8qA2 NA NA chr8 23770823 GAAxATC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 147 3 0 75.954703 0.402778 0.02 1.162124 43 29 1247 832 60 60 0 0 CC 16.830755 56 0 1524 0 KEEP - Ikbkb YES UVC_2 chr8 24042978 24042978 T G exonic Kat6a nonsynonymous SNV NM_001081149:c.T2831G:p.V944G exonic Myst3 nonsynonymous SNV uc009led.1:c.T2831G:p.V944G exonic ENSMUSG00000031540 nonsynonymous SNV ENSMUST00000110696:c.T2831G:p.V944G 8qA2 NA NA chr8 24042978 GCGxTGA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973964 0.973965 0.999999 101 0 0 29.016834 0.226415 0.02 1.418633 41 12 1189 356 60 60 0 0 TT 10.811264 36 0 939 0 KEEP + Kat6a NO UVC_2 chr8 24285863 24285863 T C exonic Agpat6 nonsynonymous SNV NM_018743:c.A1211G:p.N404S exonic Agpat6 nonsynonymous SNV uc009leo.2:c.A1211G:p.N404S exonic ENSMUSG00000031545 nonsynonymous SNV ENSMUST00000168028:c.A845G:p.N282S 8qA2 NA NA chr8 24285863 CTGxTAG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998696 0.998696 1 160 0 0 52.366286 0.276316 0.02 1.225627 55 21 1623 618 60 60 0 0 TT 20.149194 67 0 1820 0 KEEP - Agpat6 NO UVC_2 chr8 25039655 25039655 A G exonic Zmat4 nonsynonymous SNV NM_177086:c.A437G:p.Y146C exonic Zmat4 nonsynonymous SNV uc009lew.2:c.A437G:p.Y146C exonic ENSMUSG00000037492 nonsynonymous SNV ENSMUST00000042352:c.A437G:p.Y146C 8qA2 NA NA chr8 25039655 GGTxCTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.835716 0.835716 1 92 0 0 8.408154 0.108108 0.02 -0.324473 33 4 945 120 60 60 0 0 AA 13.209579 44 0 1118 0 KEEP + Zmat4 NO UVC_2 chr8 26666080 26666080 C G exonic Fgfr1 nonsynonymous SNV NM_001079908:c.C192G:p.I64M exonic Fgfr1 nonsynonymous SNV uc009lfy.1:c.C192G:p.I64M exonic ENSMUSG00000031565 nonsynonymous SNV ENSMUST00000084027:c.C192G:p.I64M 8qA2 NA NA chr8 26666080 CATxAAC C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 181 0 0 151.261077 0.520408 0.02 1.113993 47 51 1431 1564 60 60 0 0 CC 20.447413 68 0 1917 0 KEEP + Fgfr1 NO UVC_2 chr8 28147043 28147043 A C exonic Erlin2 nonsynonymous SNV NM_153592:c.A958C:p.S320R exonic Erlin2 nonsynonymous SNV uc009lhr.1:c.A958C:p.S320R exonic ENSMUSG00000031483 nonsynonymous SNV ENSMUST00000033873:c.A958C:p.S320R 8qA2 NA NA chr8 28147043 CTGxGCG A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818455 0.818465 0.999988 73 2 0 30.708116 0.388889 0.02 -0.315391 22 14 654 345 60 60 0 0 AA 8.120968 27 0 748 0 KEEP + Erlin2 NO UVC_2 chr8 3535852 3535852 T C exonic Pnpla6 synonymous SNV NM_015801:c.T2553C:p.R851R exonic Pnpla6 synonymous SNV uc009krt.1:c.T2637C:p.R879R exonic ENSMUSG00000004565 synonymous SNV ENSMUST00000004681:c.T2553C:p.R851R 8qA1.1 NA NA chr8 3535852 CCGxGCC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.970818 0.97082 0.999997 96 0 0 22.107778 0.207547 0.02 1.329156 42 11 1209 286 60 60 0 0 TT 9.322954 31 0 838 0 KEEP + Pnpla6 NO UVC_2 chr8 35914182 35914182 T C exonic Tnks synonymous SNV NM_175091:c.A2592G:p.L864L exonic Tnks synonymous SNV uc009lku.1:c.A1560G:p.L520L exonic ENSMUSG00000031529 synonymous SNV ENSMUST00000033929:c.A2592G:p.L864L 8qA4 NA NA chr8 35914182 GATxAGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997163 0.997163 1 191 2 0 12.538201 0.084507 0.02 1.269498 65 6 1912 186 60 60 0 0 TT 24.960889 83 0 2258 0 KEEP - Tnks NO UVC_2 chr8 4311688 4311688 G A exonic Elavl1 nonsynonymous SNV NM_010485:c.C83T:p.P28L exonic Elavl1 nonsynonymous SNV uc009kts.1:c.C83T:p.P28L exonic ENSMUSG00000040028 nonsynonymous SNV ENSMUST00000098950:c.C83T:p.P28L 8qA1.1 NA NA chr8 4311688 TGAxGGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668494 0.668523 0.999957 65 0 0 58.54786 0.655172 0.02 -0.254356 10 19 302 576 60 60 0 0 GG 7.820611 26 0 728 0 KEEP - Elavl1 YES UVC_2 chr8 46095340 46095340 A C exonic Fat1 nonsynonymous SNV NM_001081286:c.A3839C:p.D1280A exonic Fat1 nonsynonymous SNV uc009lon.2:c.A3839C:p.D1280A exonic ENSMUSG00000070047 nonsynonymous SNV ENSMUST00000093529:c.A3839C:p.D1280A 8qB1.1 NA NA chr8 46095340 CGGxTAA A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.973965 0.973965 1 100 0 0 23.13829 0.185185 0.02 1.418596 44 10 1280 296 60 60 0 0 AA 11.388663 38 0 984 0 KEEP + Fat1 NO UVC_2 chr8 46118778 46118778 T C exonic Fat1 synonymous SNV NM_001081286:c.T9945C:p.P3315P exonic Fat1 synonymous SNV uc009lon.2:c.T9945C:p.P3315P exonic ENSMUSG00000070047 synonymous SNV ENSMUST00000093529:c.T9945C:p.P3315P 8qB1.1 NA NA chr8 46118778 GCCxTCG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 101 1 0 34.781866 0.245614 0.02 1.491158 43 14 1307 419 60 60 0 0 TT 12.03086 40 0 1106 0 KEEP + Fat1 NO UVC_2 chr8 4749380 4749380 A G exonic Shcbp1 nonsynonymous SNV NM_011369:c.T1004C:p.V335A exonic Shcbp1 nonsynonymous SNV uc009kua.1:c.T1004C:p.V335A exonic ENSMUSG00000022322 nonsynonymous SNV ENSMUST00000022945:c.T1004C:p.V335A 8qA1.1 NA NA chr8 4749380 GAAxCCA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.989542 0.989542 1 125 0 0 67.591785 0.409836 0.02 1.456137 36 25 1080 736 60 60 0 0 AA 13.828467 46 0 1235 0 KEEP - Shcbp1 NO UVC_2 chr8 48277589 48277589 G A exonic Stox2 nonsynonymous SNV NM_001114311:c.C2189T:p.S730L exonic Stox2 nonsynonymous SNV uc009lqv.2:c.C2003T:p.S668L exonic ENSMUSG00000038143 nonsynonymous SNV ENSMUST00000079195:c.C2189T:p.S730L 8qB1.1 NA NA chr8 48277589 GGTxACT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.791986 0.800245 0.989678 68 0 0 86.923238 0.828571 0.02 -0.305437 6 29 165 802 60 60 0 0 GG 7.219263 24 0 677 0 KEEP - Stox2 YES UVC_2 chr8 56201588 56201588 T G intergenic "Gpm6a(dist=55357),NONE(dist=NONE)" NA NA intergenic "Gpm6a(dist=55357),NONE(dist=NONE)" NA NA intergenic "ENSMUSG00000031517(dist=55357),ENSMUSG00000092881(dist=1760122)" NA NA 8qB1.3 "Score=0.987647;Name=No.104149,chr8:56203631" NA chr8 56201588 ATGxCTT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 1191 3 289 16.193564 0.035088 0.02 6.738211 275 10 8042 302 54 34 0 0 TT 186.379014 620 0 16798 0 KEEP NA Gpm6a NO UVC_2 chr8 60021508 60021508 A G intronic Galnt7 NA NA UTR3 Galnt7 NA NA intronic ENSMUSG00000031608 NA NA 8qB2 NA NA chr8 60021508 ATGxTGC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.926238 0.941741 0.983538 73 0 0 32.466726 0.276596 0.02 -0.412217 34 13 1009 383 60 60 0 0 AA 6.015306 20 0 549 0 KEEP - Galnt7 NO UVC_2 chr8 72440496 72440496 A G exonic Gatad2a nonsynonymous SNV NM_001113345:c.T716C:p.V239A exonic Gatad2a nonsynonymous SNV uc009lyf.2:c.T716C:p.V239A exonic ENSMUSG00000036180 nonsynonymous SNV ENSMUST00000065169:c.T716C:p.V239A 8qB3.3 NA NA chr8 72440496 ATGxCTA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999559 0.999559 1 163 0 0 58.562043 0.27381 0.02 1.353531 61 23 1799 690 60 60 0 0 AA 17.393102 58 0 1526 0 KEEP - Gatad2a NO UVC_2 chr8 72817059 72817059 A G exonic Homer3 synonymous SNV NM_001146153:c.A1074G:p.A358A exonic Homer3 synonymous SNV uc009lzs.2:c.A1065G:p.A355A exonic ENSMUSG00000003573 synonymous SNV ENSMUST00000003669:c.A1074G:p.A358A 8qB3.3 NA NA chr8 72817059 AGCxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668463 0.668523 0.999909 62 0 0 16.205672 0.25 0.02 -0.245381 21 7 588 197 60 60 0 0 AA 6.911842 23 0 603 0 KEEP + Homer3 NO UVC_2 chr8 72853926 72853926 C T exonic Gdf1 nonsynonymous SNV NM_008107:c.C46T:p.L16F ncRNA_exonic Gdf1 NA NA exonic ENSMUSG00000055694 nonsynonymous SNV ENSMUST00000046516:c.C46T:p.L16F 8qB3.3 NA NA chr8 72853926 CTGxTCT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992094 0.992094 1 169 0 0 65.548637 0.396825 0.02 1.34017 38 25 1097 720 60 60 0 0 CC 20.081944 76 1 2113 26 KEEP + Gdf1 YES UVC_2 chr8 72857221 72857221 G A exonic Upf1 nonsynonymous SNV NM_001122829:c.C2986T:p.P996S exonic Upf1 nonsynonymous SNV uc009mab.2:c.C2986T:p.P996S exonic ENSMUSG00000058301 nonsynonymous SNV ENSMUST00000075666:c.C2986T:p.P996S 8qB3.3 NA NA chr8 72857221 GAGxCAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 240 2 0 64.859577 0.217054 0.02 2.653067 101 28 2990 808 60 60 0 0 GG 24.958087 83 0 2259 0 KEEP - Upf1 YES UVC_2 chr8 72863046 72863046 A G exonic Upf1 nonsynonymous SNV NM_001122829:c.T1376C:p.V459A exonic Upf1 nonsynonymous SNV uc009mab.2:c.T1376C:p.V459A exonic ENSMUSG00000058301 nonsynonymous SNV ENSMUST00000075666:c.T1376C:p.V459A 8qB3.3 NA NA chr8 72863046 ACCxCAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.998993 0.998993 1 164 0 0 15.328739 0.102564 0.02 1.109467 70 8 2048 227 60 60 0 0 AA 18.94485 63 0 1694 0 KEEP - Upf1 NO UVC_2 chr8 73120256 73120256 A G exonic Isyna1 nonsynonymous SNV NM_023627:c.A1085G:p.D362G exonic Isyna1 nonsynonymous SNV uc009maw.1:c.A737G:p.D246G exonic ENSMUSG00000019139 nonsynonymous SNV ENSMUST00000019283:c.A1085G:p.D362G 8qB3.3 NA NA chr8 73120256 ACGxCAT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999407 0.999407 1 149 0 0 30.44191 0.170732 0.02 1.173429 68 14 2012 400 60 60 0 0 AA 15.273217 51 0 1357 0 KEEP + Isyna1 NO UVC_2 chr8 73898652 73898652 A C exonic Nr2f6 nonsynonymous SNV NM_010150:c.T903G:p.D301E exonic Nr2f6 nonsynonymous SNV uc009mcx.1:c.T903G:p.D301E exonic "ENSMUSG00000002393,ENSMUSG00000002396" nonsynonymous SNV ENSMUST00000002466:c.T903G:p.D301E 8qB3.3 NA NA chr8 73898652 GGCxTCT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818408 0.818465 0.999931 64 0 0 56.256478 0.555556 0.02 -0.315315 16 20 468 575 60 60 0 0 AA 7.507518 25 0 645 0 KEEP - Nr2f6 NO UVC_2 chr8 74411151 74411151 T G intronic Zfp709 NA NA intronic Zfp709 NA NA upstream ENSMUSG00000056019 NA NA 8qB3.3 "Score=0.909784;Name=No.104204,chr8:73547750" NA chr8 74411151 TCTxGGC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717238 0.717315 0.999892 60 0 0 17.949772 0.225806 0.02 -0.271903 24 7 722 218 60 60 0 0 TT 6.918033 23 0 640 0 KEEP + Zfp709 NO UVC_2 chr8 83219346 83219346 A T UTR3 Frem3 NA NA UTR3 Frem3 NA NA intronic ENSMUSG00000042353 NA NA 8qC2 NA NA chr8 83219346 TGTxATG A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.865197 0.865745 0.999366 66 0 0 49.895262 0.461538 0.02 -0.342049 21 18 623 530 60 60 0 0 AA 5.111729 17 0 463 0 KEEP + Frem3 NO UVC_2 chr8 86097051 86097051 A G intronic Tecr NA NA UTR5 Tecr NA NA intronic ENSMUSG00000031708 NA NA 8qC2 NA NA chr8 86097051 AGTxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353723 0.353947 0.999366 41 0 0 6.434489 0.157895 0.02 -0.166617 16 3 456 86 60 60 0 0 AA 5.110255 17 0 440 0 KEEP - Tecr NO UVC_2 chr8 86590083 86590083 T G upstream Rfx1 NA NA upstream Rfx1 NA NA exonic ENSMUSG00000056753 nonsynonymous SNV ENSMUST00000071067:c.A415C:p.I139L 8qC3 NA NA chr8 86590083 TTAxCGT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 137 0 0 82.906092 0.438356 0.02 1.25279 41 32 1169 894 60 60 0 0 TT 15.021679 50 0 1344 0 KEEP NA Rfx1 NO UVC_2 chr8 86659647 86659647 T C intronic Cc2d1a NA NA intronic Cc2d1a NA NA intronic ENSMUSG00000036686 NA NA 8qC3 NA NA chr8 86659647 AGAxTGC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999726 0.999726 1 152 0 0 13.180329 0.08046 0.02 1.129179 80 7 2336 204 60 60 0 0 TT 16.239838 54 0 1464 0 KEEP - Cc2d1a NO UVC_2 chr8 86663311 86663311 T G exonic Cc2d1a nonsynonymous SNV NM_145970:c.A1213C:p.M405L exonic Cc2d1a nonsynonymous SNV uc009mma.1:c.A1213C:p.M405L exonic ENSMUSG00000036686 nonsynonymous SNV ENSMUST00000117424:c.A1078C:p.M360L 8qC3 NA NA chr8 86663311 GCAxTGG T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999968 0.999968 1 249 0 0 10.819967 0.06 0.02 2.89892 94 6 2729 178 60 60 0 0 TT 33.381514 111 0 3007 0 KEEP - Cc2d1a NO UVC_2 chr8 87433413 87433413 C T intronic Dnase2a NA NA intronic Dnase2a NA NA intronic ENSMUSG00000003812 NA NA 8qC3 NA NA chr8 87433413 TTCxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999895 0.999895 1 218 2 0 82.783482 0.333333 0.02 1.076562 62 31 1835 937 60 60 0 0 CC 28.255239 94 0 2638 0 KEEP + Dnase2a YES UVC_2 chr8 95798098 95798098 C T exonic Ces1f nonsynonymous SNV NM_144930:c.G316A:p.E106K exonic Ces1f nonsynonymous SNV uc009mup.2:c.G316A:p.E106K exonic ENSMUSG00000031725 nonsynonymous SNV ENSMUST00000034178:c.G316A:p.E106K 8qC5 NA NA chr8 95798098 TCTxCTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.456764 0.457757 0.997832 46 0 0 18.363559 0.318182 0.02 -0.192969 15 7 463 210 60 60 0 0 CC 4.813142 16 0 457 0 KEEP - Ces1f YES UVC_2 chr8 96576053 96576053 G A exonic Ogfod1 synonymous SNV NM_001093757:c.G426A:p.S142S exonic Ogfod1 synonymous SNV uc009mvq.1:c.G426A:p.S142S exonic ENSMUSG00000033009 synonymous SNV ENSMUST00000060632:c.G381A:p.S127S 8qC5 NA NA chr8 96576053 GTCxTGT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.987943 0.987943 1 148 0 0 25.541321 0.183333 0.02 1.465122 49 11 1335 327 60 60 0 0 GG 21.645705 72 0 1888 0 KEEP + Ogfod1 YES UVC_2 chr8 97201287 97201287 G A intronic Pllp NA NA intronic Pllp NA NA intronic ENSMUSG00000031775 NA NA 8qC5 NA NA chr8 97201287 AAAxAAC G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457737 0.457757 0.999957 54 2 0 34.447137 0.545455 0.02 -0.192814 10 12 281 353 60 60 0 0 GG 7.821591 26 0 747 0 KEEP - Pllp YES UVC_2 chr8 97390395 97390395 A G exonic Dok4 synonymous SNV NM_053246:c.T561C:p.Y187Y exonic Dok4 synonymous SNV uc009mxf.2:c.T561C:p.Y187Y exonic ENSMUSG00000040631 synonymous SNV ENSMUST00000046461:c.T561C:p.Y187Y 8qD1 NA NA chr8 97390395 GCCxTAA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 144 1 0 39.256469 0.296875 0.02 1.134126 45 19 1313 471 60 60 0 0 AA 19.244098 64 0 1713 0 KEEP - Dok4 NO UVC_2 chr8 97600237 97600237 G A exonic Ccdc135 nonsynonymous SNV NM_001042715:c.G2290A:p.E764K exonic Ccdc135 nonsynonymous SNV uc009mxs.1:c.G2290A:p.E764K exonic ENSMUSG00000031786 nonsynonymous SNV ENSMUST00000058479:c.G2290A:p.E764K 8qD1 NA NA chr8 97600237 GGCxAGA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959857 0.959859 0.999998 90 0 0 93.309038 0.62 0.02 -0.437977 19 31 485 929 60 60 0 0 GG 9.916588 33 0 837 0 KEEP + Ccdc135 YES UVC_2 chr8 97945066 97945066 T C exonic Gtl3 synonymous SNV NM_008187:c.A546G:p.K182K exonic Gtl3 synonymous SNV uc012gir.1:c.A315G:p.K105K exonic ENSMUSG00000031796 synonymous SNV ENSMUST00000034249:c.A546G:p.K182K 8qD1 NA NA chr8 97945066 GAGxTTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997553 0.997553 1 176 0 0 37.675426 0.222222 0.02 1.260744 56 16 1655 466 60 60 0 0 TT 22.82317 76 0 2059 0 KEEP - Gtl3 NO UVC_2 chr8_random 690820 690820 G A intergenic "Tsnax(dist=89305),NONE(dist=NONE)" NA NA intergenic "Tsnax(dist=89305),AK029792(dist=56894)" NA NA downstream ENSMUSG00000074455 NA NA NA "Score=0.989584;Name=No.105235,chr8_random:819725" NA chr8_random 690820 TTAxACT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 906 1 155 55.488546 0.172662 0.02 2.565341 115 24 3492 718 46 40 0 0 GG 192.514543 640 0 18378 0 KEEP NA Tsnax YES UVC_2 chr9 102097164 102097164 G C exonic Ephb1 nonsynonymous SNV NM_001168296:c.C745G:p.P249A exonic Ephb1 nonsynonymous SNV uc009rfn.2:c.C745G:p.P249A exonic ENSMUSG00000032537 nonsynonymous SNV ENSMUST00000035129:c.C745G:p.P249A 9qF1 NA NA chr9 102097164 TGGxCAC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.291963 0.292001 0.999869 48 0 0 9.681167 0.235294 0.02 -0.1491 13 4 387 118 60 60 0 0 GG 6.292219 21 0 547 0 KEEP - Ephb1 NO UVC_2 chr9 102622972 102622972 C G exonic Amotl2 nonsynonymous SNV NM_019764:c.C500G:p.S167C exonic Amotl2 nonsynonymous SNV uc009rfx.1:c.C500G:p.S167C exonic ENSMUSG00000032531 nonsynonymous SNV ENSMUST00000035121:c.C500G:p.S167C 9qF1 NA NA chr9 102622972 TGTxCCT C G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 165 0 0 33.18218 0.245614 0.02 1.491224 43 14 1303 403 60 60 0 0 CC 24.056634 80 0 2232 0 KEEP + Amotl2 NO UVC_2 chr9 105899415 105899415 G A intronic Col6a4 NA NA intronic Col6a4 NA NA intronic ENSMUSG00000032572 NA NA 9qF1 NA NA chr9 105899415 AGAxGCA G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 93 0 0 33.268261 0.444444 0.02 -0.236818 15 12 460 356 60 60 0 0 GG 15.642904 52 0 1485 0 KEEP - Col6a4 YES UVC_2 chr9 106926082 106926082 C T exonic Dock3 synonymous SNV NM_153413:c.G1014A:p.K338K exonic Dock3 synonymous SNV uc009rkv.1:c.G1014A:p.K338K exonic ENSMUSG00000039716 synonymous SNV ENSMUST00000044532:c.G1014A:p.K338K 9qF1 NA NA chr9 106926082 ATCxTTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.963774 0.963774 1 140 0 0 66.92633 0.45098 0.02 1.444845 28 23 847 712 60 60 0 0 CC 25.256985 84 0 2329 0 KEEP - Dock3 YES UVC_2 chr9 107754895 107754895 T C exonic Rbm6 nonsynonymous SNV NM_011251:c.A884G:p.Y295C exonic Rbm6 nonsynonymous SNV uc009rnc.2:c.A488G:p.Y163C exonic ENSMUSG00000032582 nonsynonymous SNV ENSMUST00000035201:c.A488G:p.Y163C 9qF1 "Score=0.969655;Name=No.4015,chr1:17389506" NA chr9 107754895 ATGxAAT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.918171 0.918171 1 114 0 0 36.528528 0.318182 0.02 -0.38587 30 14 861 418 60 60 0 0 TT 19.246076 64 0 1714 0 KEEP - Rbm6 NO UVC_2 chr9 108111268 108111268 C T exonic Dag1 nonsynonymous SNV NM_001276481:c.G1004A:p.R335Q exonic Dag1 nonsynonymous SNV uc009rpa.1:c.G1004A:p.R335Q exonic ENSMUSG00000039952 nonsynonymous SNV ENSMUST00000166905:c.G1004A:p.R335Q 9qF2 NA NA chr9 108111268 ATCxGCG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 141 0 0 92.389648 0.551724 0.02 1.384519 26 32 666 945 60 60 0 0 CC 19.172636 64 0 1629 0 KEEP - Dag1 YES UVC_2 chr9 108111685 108111685 T C exonic Dag1 nonsynonymous SNV NM_001276481:c.A587G:p.D196G exonic Dag1 nonsynonymous SNV uc009rpa.1:c.A587G:p.D196G exonic ENSMUSG00000039952 nonsynonymous SNV ENSMUST00000166905:c.A587G:p.D196G 9qF2 NA NA chr9 108111685 AGGxCAG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.984161 0.984161 1 167 0 0 58.275487 0.37931 0.02 1.383547 36 22 1055 645 60 60 0 0 TT 25.848016 86 0 2307 0 KEEP - Dag1 NO UVC_2 chr9 108507642 108507642 G A intronic Arih2 NA NA ncRNA_intronic Ari2 NA NA intronic ENSMUSG00000064145 NA NA 9qF2 NA NA chr9 108507642 CCTxAAG G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.99994 0.99994 1 234 3 0 121.866205 0.463918 0.02 1.041475 52 45 1590 1295 60 60 0 0 GG 30.677707 102 0 2919 0 KEEP - Arih2 YES UVC_2 chr9 108971704 108971704 C A intronic Atrip NA NA ncRNA_intronic 6620401K05Rik NA NA intronic ENSMUSG00000025646 NA NA 9qF2 NA NA chr9 108971704 AAAxAAT C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552815 0.552887 0.999869 50 0 0 17.702797 0.28 0.02 -0.219256 18 7 520 208 60 60 0 0 CC 6.315929 21 0 575 0 KEEP - Atrip NO UVC_2 chr9 109242043 109242043 T C intronic Fbxw28 NA NA intronic Fbxw28 NA NA intronic ENSMUSG00000079284 NA NA 9qF2 "Score=0.928854;Name=No.105615,chr9:109159899" NA chr9 109242043 CTTxTAC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 1 1 1 668 3 141 191.749078 0.496241 0.02 2.815727 67 66 1990 2003 60 60 0 0 TT 115.463624 384 0 10656 0 KEEP - Fbxw28 NO UVC_2 chr9 113580894 113580894 T C exonic Pdcd6ip nonsynonymous SNV NM_001164677:c.A1637G:p.K546R exonic Pdcd6ip nonsynonymous SNV uc009rwn.2:c.A1622G:p.K541R exonic ENSMUSG00000032504 nonsynonymous SNV ENSMUST00000035086:c.A1622G:p.K541R 9qF3 NA NA chr9 113580894 GTCxTTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.995084 0.995084 1 157 0 0 28.254538 0.179104 0.02 1.304668 55 12 1652 362 60 60 0 0 TT 21.048006 70 0 1946 0 KEEP - Pdcd6ip NO UVC_2 chr9 113751172 113751172 T C intronic Clasp2 NA NA UTR3 Clasp2 NA NA UTR3 ENSMUSG00000033392 NA NA 9qF3 NA NA chr9 113751172 GGGxGTC T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119541 0.120436 0.99257 20 0 0 11.994898 0.454545 0.02 -0.09636 6 5 165 129 60 60 0 0 TT 2.406164 8 0 220 0 KEEP + Clasp2 NO UVC_2 chr9 118462572 118462572 A G exonic Golga4 nonsynonymous SNV NM_018748:c.A1625G:p.Y542C exonic Golga4 nonsynonymous SNV uc009rzt.1:c.A1541G:p.Y514C exonic ENSMUSG00000038708 nonsynonymous SNV ENSMUST00000172401:c.A1541G:p.Y514C 9qF3 NA NA chr9 118462572 AATxTTT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.292 0.292001 0.999997 58 0 0 9.581279 0.235294 0.02 -0.149093 13 4 376 117 60 60 0 0 AA 9.623295 32 0 859 0 KEEP + Golga4 NO UVC_2 chr9 118971792 118971792 G T exonic Vill nonsynonymous SNV NM_001164567:c.G915T:p.Q305H exonic Vill nonsynonymous SNV uc009sab.2:c.G915T:p.Q305H exonic ENSMUSG00000038775 nonsynonymous SNV ENSMUST00000051386:c.G915T:p.Q305H 9qF3 NA NA chr9 118971792 CCAxGAG G T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490543 0.490544 0.999997 65 0 0 18.101911 0.304348 0.02 -0.201734 16 7 485 209 60 60 0 0 GG 9.011928 30 0 825 0 KEEP + Vill NO UVC_2 chr9 120486542 120486542 A G ncRNA_exonic 5830454E08Rik NA NA intergenic "Rpl14(dist=2772),AK019838(dist=347031)" NA NA exonic ENSMUSG00000052658 nonsynonymous SNV ENSMUST00000064646:c.A62G:p.N21S 9qF4 NA NA chr9 120486542 GCAxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.97082 0.97082 1 125 0 0 26.711727 0.207547 0.02 1.428528 42 11 1184 332 60 60 0 0 AA 13.058046 47 1 1228 9 KEEP NA 5830454E08Rik NO UVC_2 chr9 121301103 121301103 C T exonic Trak1 nonsynonymous SNV NM_175114:c.C217T:p.L73F exonic Trak1 nonsynonymous SNV uc009sde.1:c.C217T:p.L73F exonic ENSMUSG00000032536 nonsynonymous SNV ENSMUST00000045903:c.C217T:p.L73F 9qF4 NA NA chr9 121301103 CCCxTCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.954491 0.954491 1 167 0 0 72.778154 0.510204 0.02 -0.429787 24 25 731 756 60 60 0 0 CC 29.168527 97 0 2723 0 KEEP + Trak1 YES UVC_2 chr9 121577506 121577506 C T intronic Vipr1 NA NA intronic Vipr1 NA NA intronic ENSMUSG00000032528 NA NA 9qF4 NA NA chr9 121577506 CTCxCCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999991 0.999991 1 266 3 0 133.856717 0.439252 0.02 2.936068 60 47 1784 1433 60 60 0 0 CC 38.797891 129 0 3572 0 KEEP + Vipr1 YES UVC_2 chr9 121734155 121734155 C T exonic Ccdc13 synonymous SNV NM_028384:c.G534A:p.K178K exonic Ccdc13 synonymous SNV uc009sea.1:c.G153A:p.K51K exonic ENSMUSG00000079235 synonymous SNV ENSMUST00000135986:c.G534A:p.K178K 9qF4 NA NA chr9 121734155 TGGxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.851984 0.851984 1 101 2 0 53.622076 0.5 0.02 -0.333287 19 19 575 560 60 60 0 0 CC 16.231737 54 0 1519 0 KEEP - Ccdc13 YES UVC_2 chr9 121823951 121823951 G A exonic Cyp8b1 nonsynonymous SNV NM_010012:c.C1432T:p.R478C exonic Cyp8b1 nonsynonymous SNV uc009sef.2:c.C1432T:p.R478C exonic ENSMUSG00000050445 nonsynonymous SNV ENSMUST00000062474:c.C1432T:p.R478C 9qF4 NA NA chr9 121823951 AGCxCCT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 168 2 0 43.82635 0.305085 0.02 1.375307 41 18 1097 510 60 60 0 0 GG 24.883573 83 0 2041 0 KEEP - Cyp8b1 YES UVC_2 chr9 122592004 122592004 G A ncRNA_exonic Mir138-1 NA NA ncRNA_exonic Mir138-1 NA NA ncRNA_exonic ENSMUSG00000065414 NA NA 9qF4 NA NA chr9 122592004 ATGxTGT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139813 0.139832 0.999863 35 0 0 17.349794 0.5 0.02 -0.105247 6 6 176 181 60 60 0 0 GG 6.015771 20 0 558 0 KEEP + Mir138-1 YES UVC_2 chr9 123040071 123040071 A T intronic Exosc7 NA NA intronic Exosc7 NA NA intronic ENSMUSG00000025785 NA NA 9qF4 NA NA chr9 123040071 GGTxTGA A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.997898 0.997898 1 244 0 0 40.609162 0.232877 0.02 1.25199 56 17 1612 497 60 60 0 0 AA 38.469388 128 0 3351 0 KEEP + Exosc7 NO UVC_2 chr9 123428216 123428216 C T intronic Limd1 NA NA intronic Limd1 NA NA intronic ENSMUSG00000025239 NA NA 9qF4 NA NA chr9 123428216 CCTxCTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.888875 0.888875 1 94 0 0 78.70569 0.634146 0.02 -0.359614 15 26 460 780 60 60 0 0 CC 11.368139 38 0 1050 0 KEEP + Limd1 YES UVC_2 chr9 18925624 18925624 A T exonic Olfr836 nonsynonymous SNV NM_146564:c.A224T:p.Y75F exonic Olfr836 nonsynonymous SNV uc009ohd.2:c.A224T:p.Y75F exonic ENSMUSG00000059303 nonsynonymous SNV ENSMUST00000074986:c.A224T:p.Y75F 9qA2 NA NA chr9 18925624 TGTxTTT A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999487 0.999487 1 203 0 1 135.667557 0.554217 0.02 1.263145 37 46 1077 1385 60 60 0 0 AA 27.662006 92 0 2453 0 KEEP + Olfr836 NO UVC_2 chr9 20715970 20715970 A G exonic Dnmt1 nonsynonymous SNV NM_001199431:c.T3800C:p.L1267P exonic Dnmt1 nonsynonymous SNV uc009ojn.2:c.T287C:p.L96P exonic ENSMUSG00000004099 nonsynonymous SNV ENSMUST00000004202:c.T3800C:p.L1267P 9qA3 NA NA chr9 20715970 AGAxGGA A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.490475 0.490544 0.999859 49 0 0 14.530064 0.26087 0.02 -0.201721 17 6 517 174 60 60 0 0 AA 5.412646 18 0 493 0 KEEP - Dnmt1 NO UVC_2 chr9 21223781 21223781 T C exonic Qtrt1 nonsynonymous SNV NM_021888:c.T832C:p.F278L exonic Qtrt1 nonsynonymous SNV uc009oli.2:c.T832C:p.F278L exonic ENSMUSG00000002825 nonsynonymous SNV ENSMUST00000002902:c.T832C:p.F278L 9qA3 NA NA chr9 21223781 ATGxTCG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999962 0.999962 1 288 0 0 74.985295 0.3 0.02 1.114286 70 30 2049 872 60 60 0 0 TT 43.908801 146 0 3968 0 KEEP + Qtrt1 NO UVC_2 chr9 21577210 21577210 A G exonic Kank2 synonymous SNV NM_145611:c.T2166C:p.N722N exonic Kank2 synonymous SNV uc009omm.2:c.T2166C:p.N722N exonic ENSMUSG00000032194 synonymous SNV ENSMUST00000034717:c.T2166C:p.N722N 9qA3 NA NA chr9 21577210 GACxTTC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 79 1 0 17.045869 0.307692 0.02 -0.227979 18 8 530 202 60 60 0 0 AA 12.930001 43 0 1157 0 KEEP - Kank2 NO UVC_2 chr9 24578136 24578136 T C intronic Tbx20 NA NA intronic Tbx20 NA NA intronic ENSMUSG00000031965 NA NA 9qA4 NA NA chr9 24578136 CCAxACT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139181 0.139832 0.995343 31 0 0 16.649237 0.5 0.02 -0.105243 6 6 175 174 60 60 0 0 TT 4.210294 14 0 377 0 KEEP - Tbx20 NO UVC_2 chr9 26820367 26820367 A G exonic Vps26b nonsynonymous SNV NM_178027:c.T664C:p.Y222H exonic Vps26b nonsynonymous SNV uc009oqd.2:c.T664C:p.Y222H exonic ENSMUSG00000031988 nonsynonymous SNV ENSMUST00000034470:c.T664C:p.Y222H 9qA4 NA NA chr9 26820367 GGTxCAC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.981955 0.981955 1 182 0 0 25.312411 0.192982 0.02 1.491402 46 11 1283 322 60 60 0 0 AA 29.162372 97 0 2564 0 KEEP - Vps26b NO UVC_2 chr9 30729537 30729537 G C exonic Adamts15 nonsynonymous SNV NM_001024139:c.C286G:p.L96V exonic Adamts15 nonsynonymous SNV uc009oqz.1:c.C286G:p.L96V exonic ENSMUSG00000033453 nonsynonymous SNV ENSMUST00000065112:c.C286G:p.L96V 9qA4 NA NA chr9 30729537 CTAxAGA G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.760805 0.760887 0.999892 59 0 0 34.592199 0.393939 0.02 -0.289395 20 13 584 380 60 60 0 0 GG 6.918333 23 0 652 0 KEEP - Adamts15 NO UVC_2 chr9 35017616 35017616 G A exonic Foxred1 nonsynonymous SNV NM_172291:c.C220T:p.L74F exonic Foxred1 nonsynonymous SNV uc009ost.1:c.C220T:p.L74F exonic ENSMUSG00000039048 nonsynonymous SNV ENSMUST00000043805:c.C220T:p.L74F 9qA4 NA NA chr9 35017616 CAAxAAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.990964 0.990964 1 208 0 0 72.52087 0.435484 0.02 1.348671 35 27 1052 781 60 60 0 0 GG 31.585445 105 0 2999 0 KEEP - Foxred1 YES UVC_2 chr9 35019985 35019985 A G exonic Srpr nonsynonymous SNV NM_026130:c.A254G:p.D85G exonic Srpr nonsynonymous SNV uc009osy.1:c.A254G:p.D85G exonic ENSMUSG00000032042 nonsynonymous SNV ENSMUST00000034541:c.A254G:p.D85G 9qA4 NA NA chr9 35019985 ATGxTGT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 1 72 2 0 21.096315 0.421053 0.02 -0.166606 11 8 335 229 60 60 0 0 AA 12.631148 42 0 1149 0 KEEP + Srpr NO UVC_2 chr9 35263041 35263041 C T exonic Cdon synonymous SNV NM_021339:c.C627T:p.L209L exonic Cdon synonymous SNV uc009ote.2:c.C627T:p.L209L exonic ENSMUSG00000038119 synonymous SNV ENSMUST00000042842:c.C627T:p.L209L 9qA4 NA NA chr9 35263041 GCTxCTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353897 0.353947 0.999859 41 0 0 29.161409 0.526316 0.02 -0.166652 9 10 275 301 60 60 0 0 CC 5.414818 18 0 513 0 KEEP + Cdon YES UVC_2 chr9 36388952 36388952 T C exonic Gm17689 nonsynonymous SNV NM_001167584:c.A241G:p.T81A exonic Pate-g nonsynonymous SNV uc012gqw.1:c.A241G:p.T81A exonic ENSMUSG00000091248 nonsynonymous SNV ENSMUST00000170030:c.A241G:p.T81A 9qA4 NA NA chr9 36388952 GGGxCCA T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.195623 0.196312 0.99649 30 0 0 7.282035 0.230769 0.02 -0.122791 10 3 303 89 60 60 0 0 TT 4.511907 15 0 419 0 KEEP - Gm17689 NO UVC_2 chr9 37413346 37413346 G A intronic Spa17 NA NA intronic Spa17 NA NA intronic ENSMUSG00000001948 NA NA 9qA4 NA NA chr9 37413346 TAGxAAT G A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.818464 0.818465 0.999999 80 0 0 59.542105 0.555556 0.02 -0.31502 16 20 457 607 60 60 0 0 GG 10.829459 36 0 1022 0 KEEP - Spa17 YES UVC_2 chr9 38854356 38854356 A C exonic Olfr936 nonsynonymous SNV NM_207139:c.T647G:p.L216R exonic Olfr936 nonsynonymous SNV uc012grd.1:c.T647G:p.L216R intergenic "ENSMUSG00000058820(dist=27152),ENSMUSG00000078003(dist=1787)" NA NA 9qA5.1 "Score=0.906331;Name=No.105377,chr9:38826170" NA chr9 38854356 TTCxGAT A C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260947 0.260965 0.999931 42 1 0 9.001571 0.25 0.02 -0.14032 12 4 360 110 60 60 0 0 AA 7.518678 25 0 680 0 KEEP - Olfr936 NO UVC_2 chr9 44315053 44315053 T C exonic Bcl9l nonsynonymous SNV NM_030256:c.T2215C:p.F739L exonic Bcl9l nonsynonymous SNV uc009pdu.1:c.T2104C:p.F702L exonic ENSMUSG00000063382 nonsynonymous SNV ENSMUST00000074989:c.T2215C:p.F739L 9qA5.2 NA NA chr9 44315053 GAGxTTG T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.92664 0.92664 1 108 2 0 8.25102 0.088889 0.02 -0.394616 41 4 1182 122 60 60 0 0 TT 14.13447 47 0 1276 0 KEEP + Bcl9l NO UVC_2 chr9 45518324 45518324 C T exonic Dscaml1 nonsynonymous SNV NM_001081270:c.C2986T:p.R996C exonic Dscaml1 nonsynonymous SNV uc009pga.1:c.C1282T:p.R428C exonic ENSMUSG00000032087 nonsynonymous SNV ENSMUST00000169376:c.C106T:p.R36C 9qA5.2 NA NA chr9 45518324 ACAxGCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353946 0.353947 0.999998 62 4 0 18.610307 0.368421 0.02 -0.166599 12 7 325 207 60 60 0 0 CC 10.220812 34 0 883 0 KEEP + Dscaml1 YES UVC_2 chr9 49086932 49086932 C T UTR3 Gm4894 NA NA UTR3 Gm4894 NA NA downstream ENSMUSG00000054156 NA NA 9qA5.3 NA NA chr9 49086932 TGTxATC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 75 0 0 32.267671 0.444444 0.02 -0.236802 15 12 456 346 60 60 0 0 CC 11.726187 39 0 1106 0 KEEP + Gm4894 YES UVC_2 chr9 49376065 49376065 T G ncRNA_exonic Gm11149 NA NA ncRNA_exonic Gm11149 NA NA intronic ENSMUSG00000039542 NA NA 9qA5.3 NA NA chr9 49376065 ATCxTAC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552887 0.552887 1 71 2 0 6.939993 0.16 0.02 -0.219251 21 4 643 98 60 60 0 0 TT 11.430249 38 0 1063 0 KEEP - Gm11149 NO UVC_2 chr9 50743485 50743485 A G intronic Sik2 NA NA ncRNA_UTR3 Sik2 NA NA intronic ENSMUSG00000037112 NA NA 9qA5.3 NA NA chr9 50743485 TTCxCTG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.119602 0.120436 0.993072 24 0 0 12.291431 0.454545 0.02 -0.096457 6 5 180 132 60 60 0 0 AA 3.308041 11 0 296 0 KEEP - Sik2 NO UVC_2 chr9 54509495 54509495 C A UTR5 Acsbg1 NA NA UTR5 Acsbg1 NA NA UTR5 ENSMUSG00000032281 NA NA 9qA5.3 NA NA chr9 54509495 CACxGAA C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.322806 0.322807 0.999999 59 0 0 63.781393 1 0.02 -0.157884 0 18 0 552 0 60 0 0 CC 10.812048 36 0 859 0 KEEP - Acsbg1 NO UVC_2 chr9 56738320 56738320 G C exonic Cspg4 synonymous SNV NM_139001:c.G4260C:p.G1420G exonic Cspg4 synonymous SNV uc009ptn.1:c.G3447C:p.G1149G exonic ENSMUSG00000032911 synonymous SNV ENSMUST00000035661:c.G4260C:p.G1420G 9qB NA NA chr9 56738320 TGGxAGC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.58293 0.58293 1 76 0 0 17.065053 0.269231 0.02 -0.227919 19 7 570 203 60 60 0 0 GG 12.633428 42 0 1184 0 KEEP + Cspg4 NO UVC_2 chr9 59627763 59627763 T G exonic Myo9a nonsynonymous SNV NM_173018:c.T343G:p.S115A exonic Myo9a nonsynonymous SNV uc009pyq.2:c.T343G:p.S115A exonic ENSMUSG00000039585 nonsynonymous SNV ENSMUST00000128341:c.T343G:p.S115A 9qB NA NA chr9 59627763 GGGxCAA T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 74 0 0 30.100261 0.392857 0.02 -0.245579 17 11 503 330 60 60 0 0 TT 11.717008 39 0 1048 0 KEEP + Myo9a NO UVC_2 chr9 64023460 64023460 A G exonic Rpl4 nonsynonymous SNV NM_024212:c.A352G:p.T118A exonic Rpl4 nonsynonymous SNV uc009qbn.1:c.A352G:p.T118A exonic ENSMUSG00000032399 nonsynonymous SNV ENSMUST00000034966:c.A352G:p.T118A 9qC NA NA chr9 64023460 ACAxCCC A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.552837 0.552887 0.999909 55 0 0 18.00298 0.28 0.02 -0.219251 18 7 516 211 60 60 0 0 AA 7.218247 24 0 657 0 KEEP + Rpl4 NO UVC_2 chr9 64083721 64083721 A G exonic Uchl4 nonsynonymous SNV NM_033607:c.A676G:p.N226D exonic Uchl4 nonsynonymous SNV uc009qbq.1:c.A676G:p.N226D exonic ENSMUSG00000035337 nonsynonymous SNV ENSMUST00000039011:c.A676G:p.N226D 9qC NA NA chr9 64083721 TTTxATG A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.992926 0.992926 1 151 0 0 15.050753 0.109375 0.02 1.429761 57 7 1716 213 60 60 0 0 AA 21.656192 72 0 1995 0 KEEP - Uchl4 NO UVC_2 chr9 65578950 65578950 A T exonic Zfp609 nonsynonymous SNV NM_172536:c.T806A:p.V269D exonic Zfp609 nonsynonymous SNV uc009qdx.1:c.T806A:p.V269D exonic ENSMUSG00000040524 nonsynonymous SNV ENSMUST00000046309:c.T656A:p.V219D 9qC NA NA chr9 65578950 TTGxCCA A T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.55281 0.552887 0.999859 51 0 0 17.303097 0.28 0.02 -0.219228 18 7 519 204 60 60 0 0 AA 5.411299 18 0 487 0 KEEP - Zfp609 NO UVC_2 chr9 71571343 71571343 T C exonic Cgnl1 synonymous SNV NM_026599:c.A1683G:p.E561E exonic Cgnl1 synonymous SNV uc012gwn.1:c.A1683G:p.E561E exonic ENSMUSG00000032232 synonymous SNV ENSMUST00000072899:c.A1683G:p.E561E 9qD NA NA chr9 71571343 CCCxTCT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.909069 0.909069 1 143 3 0 41.638935 0.416667 0.02 -0.377083 21 15 627 451 60 60 0 0 TT 26.160354 87 0 2396 0 KEEP - Cgnl1 NO UVC_2 chr9 75741602 75741602 C T exonic Bmp5 synonymous SNV NM_007555:c.C1206T:p.V402V exonic Bmp5 synonymous SNV uc009qsu.1:c.C1206T:p.V402V exonic ENSMUSG00000032179 synonymous SNV ENSMUST00000012281:c.C1206T:p.V402V 9qD NA NA chr9 75741602 AGTxCAG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 DBSNP COVERED 0.322807 0.322807 1 79 2 0 9.868422 0.222222 0.02 -0.157881 14 4 427 121 60 60 0 0 CC 14.737438 49 0 1373 0 KEEP + Bmp5 YES UVC_2 chr9 77829311 77829311 A G exonic Elovl5 nonsynonymous SNV NM_134255:c.A652G:p.T218A exonic Elovl5 nonsynonymous SNV uc009qtn.2:c.A652G:p.T218A exonic ENSMUSG00000032349 nonsynonymous SNV ENSMUST00000034904:c.A652G:p.T218A 9qE1 NA NA chr9 77829311 ACGxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.717315 0.717315 1 78 1 0 43.431132 0.483871 0.02 -0.271883 16 15 467 456 60 60 0 0 AA 12.320102 41 0 1095 0 KEEP + Elovl5 NO UVC_2 chr9 79667529 79667529 C T exonic Filip1 synonymous SNV NM_001081243:c.G1614A:p.G538G exonic Filip1 synonymous SNV uc009quy.1:c.G1614A:p.G538G exonic ENSMUSG00000034898 synonymous SNV ENSMUST00000093811:c.G1614A:p.G538G 9qE1 NA NA chr9 79667529 CTTxCCC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.999978 0.999978 1 340 0 0 172.97446 0.572816 0.02 2.98019 44 59 1348 1754 60 60 0 0 CC 55.044268 183 0 5157 0 KEEP - Filip1 YES UVC_2 chr9 85738363 85738363 C A exonic Tpbg synonymous SNV NM_001164792:c.C777A:p.S259S exonic Tpbg synonymous SNV uc009qwz.2:c.C777A:p.S259S exonic ENSMUSG00000035274 synonymous SNV ENSMUST00000006559:c.C777A:p.S259S 9qE3.1 NA NA chr9 85738363 ATCxTTC C A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.986153 0.986153 1 206 2 0 83.448298 0.508475 0.02 1.27611 29 30 865 869 60 60 0 0 CC 35.796467 119 0 3369 0 KEEP + Tpbg NO UVC_2 chr9 87619168 87619168 A G exonic Tbx18 nonsynonymous SNV NM_023814:c.T758C:p.L253P exonic Tbx18 nonsynonymous SNV uc009qyh.2:c.T758C:p.L253P exonic ENSMUSG00000032419 nonsynonymous SNV ENSMUST00000034991:c.T758C:p.L253P 9qE3.1 NA NA chr9 87619168 GTAxGTT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.099658 0.099721 0.999366 33 0 0 11.285428 0.4 0.02 -0.087713 6 4 182 123 60 60 0 0 AA 5.113555 17 0 476 0 KEEP - Tbx18 NO UVC_2 chr9 98480668 98480668 C T intronic Copb2 NA NA intronic Copb2 NA NA intronic ENSMUSG00000032458 NA NA 9qE3.3 NA NA chr9 98480668 GTCxTTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 95 2 0 18.230947 0.259259 0.02 -0.236776 20 7 594 216 60 60 0 0 CC 15.040588 50 0 1415 0 KEEP + Copb2 YES UVC_2 chr9 98856331 98856331 C T exonic Foxl2 synonymous SNV NM_012020:c.C252T:p.F84F exonic Foxl2 synonymous SNV uc009rdr.2:c.C252T:p.F84F exonic ENSMUSG00000050397 synonymous SNV ENSMUST00000051312:c.C252T:p.F84F 9qE3.3 NA NA chr9 98856331 GTTxCCG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.457757 0.457757 1 105 0 0 35.694524 0.571429 0.02 -0.192967 9 12 281 362 60 60 0 0 CC 21.053634 70 0 1961 0 KEEP + Foxl2 YES UVC_2 chrX 144182062 144182062 C T intergenic "Lrch2(dist=193438),Gm15080(dist=245474)" NA NA intergenic "Lrch2(dist=193438),NONE(dist=NONE)" NA NA ncRNA_exonic ENSMUSG00000085441 NA NA XqF2 "Score=0.93059;Name=No.114337,chrX:144237688" NA chrX 144182062 CTTxATG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.959859 0.959859 1 268 3 31 163.327682 0.98 0.02 -0.438502 1 49 31 1421 29 49 0 0 CC 58.059632 193 0 5547 0 KEEP NA Lrch2 YES UVC_2 chrX 162818094 162818094 A G intronic Gpm6b NA NA ncRNA_intronic M6B NA NA intronic ENSMUSG00000031342 NA NA XqF5 NA NA chrX 162818094 GGTxCCT A G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 116 0 0 12.184257 0.238095 0.02 -0.183953 16 5 418 148 60 60 0 0 AA 20.835962 73 1 1799 9 KEEP + Gpm6b NO UVC_2 chrX 18024776 18024776 C T exonic 4930578C19Rik synonymous SNV NM_175228:c.G432A:p.E144E exonic 4930578C19Rik synonymous SNV uc009ssp.1:c.G432A:p.E144E exonic ENSMUSG00000037358 synonymous SNV ENSMUST00000044188:c.G432A:p.E144E XqA1.3 NA NA chrX 18024776 GCGxTCA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 91 0 0 31.81969 0.833333 0.02 -0.105245 2 10 60 294 60 60 0 0 CC 21.656419 72 0 2015 0 KEEP - 4930578C19Rik YES UVC_2 chrX 18024778 18024778 C T exonic 4930578C19Rik nonsynonymous SNV NM_175228:c.G430A:p.E144K exonic 4930578C19Rik nonsynonymous SNV uc009ssp.1:c.G430A:p.E144K exonic ENSMUSG00000037358 nonsynonymous SNV ENSMUST00000044188:c.G430A:p.E144K XqA1.3 NA NA chrX 18024778 GCTxAAT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 1 95 0 0 32.320044 0.833333 0.02 -0.105252 2 10 62 299 60 60 0 0 CC 21.960062 73 0 2089 0 KEEP - 4930578C19Rik YES UVC_2 chrX 20247934 20247934 C T exonic Uba1 nonsynonymous SNV NM_001136085:c.C746T:p.S249L exonic Uba1 nonsynonymous SNV uc009stl.1:c.C746T:p.S249L exonic ENSMUSG00000001924 nonsynonymous SNV ENSMUST00000001989:c.C746T:p.S249L XqA1.3 NA NA chrX 20247934 TCTxATT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.423478 0.423478 1 63 0 0 61.289274 0.904762 0.02 -0.184175 2 19 61 551 60 60 0 0 CC 11.431964 38 0 1098 0 KEEP + Uba1 YES UVC_2 chrX 20273478 20273478 G C exonic Cdk16 nonsynonymous SNV NM_011049:c.G922C:p.A308P exonic Cdk16 nonsynonymous SNV uc009stn.1:c.G817C:p.A273P exonic ENSMUSG00000031065 nonsynonymous SNV ENSMUST00000033380:c.G922C:p.A308P XqA1.3 NA NA chrX 20273478 CTGxCTC G C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 207 1 0 86.932901 0.962963 0.02 -0.236771 1 26 31 764 60 60 0 0 GG 44.417804 148 0 3965 0 KEEP + Cdk16 NO UVC_2 chrX 20295859 20295859 C T exonic Usp11 synonymous SNV NM_145628:c.C2218T:p.L740L exonic Usp11 synonymous SNV uc009stq.3:c.C2218T:p.L740L exonic ENSMUSG00000031066 synonymous SNV ENSMUST00000033383:c.C2218T:p.L740L XqA1.3 NA NA chrX 20295859 CAGxTGA C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.139832 0.139832 0.999999 59 0 0 36.550583 0.916667 0.02 -0.105249 1 11 29 328 60 60 0 0 CC 10.828345 36 0 1012 0 KEEP + Usp11 YES UVC_2 chrX 35057300 35057300 T C exonic Rhox2g nonsynonymous SNV NM_001114153:c.A472G:p.T158A exonic Rhox2g nonsynonymous SNV uc012hgi.1:c.A472G:p.T158A exonic ENSMUSG00000079629 nonsynonymous SNV ENSMUST00000115169:c.A472G:p.T158A XqA3.3 "Score=0.967698;Name=No.112611,chrX:34782873" NA chrX 35057300 CTGxAGT T C Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.641347 0.641347 1 155 0 2 67.853124 0.785714 0.02 -0.245424 6 22 174 637 60 60 0 0 TT 31.574566 105 0 2810 0 KEEP - Rhox2g NO UVC_2 chrX 35254386 35254386 C T exonic Rhox9 synonymous SNV NM_023894:c.G285A:p.K95K exonic Rhox9 synonymous SNV uc009szj.1:c.G285A:p.K95K exonic ENSMUSG00000068048 synonymous SNV ENSMUST00000089062:c.G285A:p.K95K XqA3.3 "Score=0.983845;Name=No.112676,chrX:35178109" NA chrX 35254386 TTCxTTG C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.612407 0.612407 1 182 4 13 72.544017 0.846154 0.02 -0.236815 4 22 117 669 60 60 0 0 CC 36.070811 123 1 3471 8 KEEP - Rhox9 YES UVC_2 chrX 43809126 43809126 C T intergenic "Actrt1(dist=125604),Smarca1(dist=1353421)" NA NA exonic Gm4987 nonsynonymous SNV uc009tbk.1:c.G346A:p.A116T exonic ENSMUSG00000063816 nonsynonymous SNV ENSMUST00000078326:c.G346A:p.A116T XqA4 NA NA chrX 43809126 GTGxTGC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.78106 0.78106 1 178 0 0 116.004525 1 0.02 -0.298194 0 34 0 998 0 60 0 0 CC 34.555646 115 0 3177 0 KEEP - Actrt1 YES UVC_2 chrX 43809389 43809389 T G intergenic "Actrt1(dist=125867),Smarca1(dist=1353158)" NA NA exonic Gm4987 nonsynonymous SNV uc009tbk.1:c.A83C:p.Y28S exonic ENSMUSG00000063816 nonsynonymous SNV ENSMUST00000078326:c.A83C:p.Y28S XqA4 NA NA chrX 43809389 ACAxATC T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.668523 0.668523 1 127 3 5 74.950239 0.793103 0.02 -0.254355 6 23 169 704 60 60 0 0 TT 25.791182 86 0 2221 0 KEEP - Actrt1 NO UVC_2 chrX 54529107 54529107 C T exonic Arhgef6 nonsynonymous SNV NM_152801:c.G940A:p.E314K exonic Arhgef6 nonsynonymous SNV uc012hhy.1:c.G151A:p.E51K exonic ENSMUSG00000031133 nonsynonymous SNV ENSMUST00000114735:c.G151A:p.E51K XqA5 NA NA chrX 54529107 CTTxTTC C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.353947 0.353947 0.999999 69 0 0 56.529397 0.894737 0.02 -0.16665 2 17 62 512 60 60 0 0 CC 10.829808 36 0 1034 0 KEEP - Arhgef6 YES UVC_2 chrX 70115122 70115122 C T intergenic "Gabrq(dist=31239),Cetn2(dist=43782)" NA NA intergenic "Gabrq(dist=27181),Cetn2(dist=43782)" NA NA ncRNA_exonic ENSMUSG00000090089 NA NA XqA7.3 NA NA chrX 70115122 GATxTTT C T Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054132 0.054137 0.999909 34 0 0 22.928566 0.875 0.02 -0.070167 1 7 31 209 60 60 0 0 CC 7.219854 24 0 687 0 KEEP NA Gabrq YES UVC_2 chrX 93350987 93350987 T G intronic Msn NA NA intronic Msn NA NA intronic ENSMUSG00000031207 NA NA XqC3 NA NA chrX 93350987 CTCxTTT T G Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL UNCOVERED 0.054137 0.054137 0.999998 48 0 0 26.511623 1 0.02 -0.070155 0 8 0 227 0 60 0 0 TT 10.226728 34 0 946 0 KEEP + Msn NO UVC_2 chrX 99342050 99342050 T A exonic Ercc6l nonsynonymous SNV NM_146235:c.A191T:p.Q64L exonic Ercc6l nonsynonymous SNV uc009tyk.2:c.A191T:p.Q64L exonic ENSMUSG00000051220 nonsynonymous SNV ENSMUST00000056904:c.A191T:p.Q64L XqD NA NA chrX 99342050 TCCxGGA T A Ot9357_Karl-Rudolf.Muehlbauer_301-276_mEx_AV_30X_06262013-reads1-index19_GTGAAA_L003 7-E185-R-P_1 0 NOVEL COVERED 0.260965 0.260965 1 68 1 0 47.259876 0.875 0.02 -0.14034 2 14 57 432 60 60 0 0 TT 12.932766 43 0 1179 0 KEEP - Ercc6l NO